Query 010912
Match_columns 497
No_of_seqs 261 out of 2137
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 16:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 2.6E-49 8.8E-54 396.6 34.7 430 40-472 7-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 2.4E-19 8.3E-24 178.9 19.9 205 41-246 234-445 (460)
3 1pw4_A Glycerol-3-phosphate tr 82.8 33 0.0011 32.4 38.9 21 444-464 410-430 (451)
4 4aps_A DI-OR tripeptide H+ sym 82.7 35 0.0012 32.8 29.5 28 437-464 441-468 (491)
5 3o7q_A L-fucose-proton symport 53.3 1.4E+02 0.0049 27.7 34.5 44 47-90 28-73 (438)
6 2k1k_A Ephrin type-A receptor 25.0 63 0.0022 18.6 2.6 16 224-239 15-30 (38)
7 1pw4_A Glycerol-3-phosphate tr 22.8 4.5E+02 0.015 24.2 20.3 38 46-83 253-293 (451)
8 2jwa_A Receptor tyrosine-prote 19.3 1.2E+02 0.0043 18.1 3.1 6 241-246 32-37 (44)
9 2ww9_B Protein transport prote 15.6 42 0.0014 23.2 0.5 71 1-71 1-71 (80)
10 2knc_B Integrin beta-3; transm 14.7 2.7E+02 0.0091 19.1 4.5 46 445-490 9-61 (79)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=2.6e-49 Score=396.56 Aligned_cols=430 Identities=24% Similarity=0.401 Sum_probs=395.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccc
Q 010912 40 VIEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYR 119 (497)
Q Consensus 40 ~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 119 (497)
.++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++++.|++|++
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~ 85 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQH 85 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467899999999999999999999999999999999999999999999998877 7788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 010912 120 MLGIHTQRAMLTLLAVSIPLAIIWFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMIC 199 (497)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (497)
+.++.+++++.+.++.+++..+++.+.++++.+++.+++..+.+..|++++.++.++..+...+.+++++.|+++.+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (460)
T 3mkt_A 86 KIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI 165 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999987776778888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-c---CCccchhHHHHHHHHHHHHHHHHHHHhhcccccc-c-cCCCCHHHHHhHHHHHHHHh
Q 010912 200 SAITALLHILVCWVLVFK-S---GLESKGAALSITISNWVNVFFLAMYIKFSQACIK-T-WTGFSAEALHDIISFIKLAL 273 (497)
Q Consensus 200 ~~~~~~~~i~~~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~~~~~ 273 (497)
++++.++|+++++++++. + ++|+.|+++++++++++..++..++.+++++.+. + +.++...+++.+|+++++++
T Consensus 166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (460)
T 3mkt_A 166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245 (460)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence 999999999999999985 3 6899999999999999999998888866543321 1 12222336788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 010912 274 PSAIMICLEYWSFEMVVLLSGLLPNPKLETSVLSISLNTCWMVYMISVGLGGAISTRVSNELGAGNSKGARLALRVMIMI 353 (497)
Q Consensus 274 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 353 (497)
|.++++....+...+++.++++++ ++++++|++++++.++..++..+++++..|.+++++|++|.++.++..+++.++
T Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~ 323 (460)
T 3mkt_A 246 PVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMT 323 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999985 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchhhhhhhcCChHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHh
Q 010912 354 AITEGATVGITTILVRNVWGKLYSNEEEVIKYVAKMMPLLALSDFLDGFQCMLSGAARGCGWQNLCAYINLGAYYAVGIP 433 (497)
Q Consensus 354 ~~~~~~~~~i~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 433 (497)
...+++++++++.++++++..+|.+|+++++.+..++++++++.++.+++....+.+++.||++.+++.+++..+++++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 403 (460)
T 3mkt_A 324 GLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLP 403 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999987899999
Q ss_pred HHHHHHHh----hc-CCchhHHHHHHHHHHHHHHHHHHHHHhCC
Q 010912 434 SAVLFAFF----LH-IGGMGLWMGIICGLSMQIIALVTVIATTN 472 (497)
Q Consensus 434 ~~~~l~~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 472 (497)
+++++... ++ +|..|+|+++.+++++..++..++++|..
T Consensus 404 l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 404 TGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999776 66 89999999999999999888776666543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.82 E-value=2.4e-19 Score=178.90 Aligned_cols=205 Identities=16% Similarity=0.218 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCcccch
Q 010912 41 IEEATKQIWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASIASSFASVSGFSVLLGMGSALETLCGQAFGAKQYRM 120 (497)
Q Consensus 41 ~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 120 (497)
++..|++++.++|.+++++...+...+|+.+++++|++++|+|+++.++.++. ..+..+++++..|.+++.+|++|+++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45578899999999999999999999999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 010912 121 LGIHTQRAMLTLLAVSIPLAII-WFYTSNILIALGQDHEISTGAGTYNRWMIPSLFAYGILQCLNRFLQTQNNVFPMMIC 199 (497)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (497)
.++..+.+..+...++++.+++ +++++++..++..+++..+.+..+++++.++.++.++..+..+.+++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999998877 668999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhh----cC-CccchhHHHHHHHHHHHHHHHHHHHhh
Q 010912 200 SAITA-LLHILVCWVLVFK----SG-LESKGAALSITISNWVNVFFLAMYIKF 246 (497)
Q Consensus 200 ~~~~~-~~~i~~~~~li~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~ 246 (497)
++++. ++++++++++.+. .+ +|..|+++++.+++++..++..+.++|
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 8999999999985 45 899999999999999998887766543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=82.75 E-value=33 Score=32.44 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=11.6
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 010912 444 IGGMGLWMGIICGLSMQIIAL 464 (497)
Q Consensus 444 ~g~~g~~~a~~i~~~~~~~~~ 464 (497)
.|....++...+..++..++.
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHH
Confidence 566666665555555554444
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=82.74 E-value=35 Score=32.80 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=12.1
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 010912 437 LFAFFLHIGGMGLWMGIICGLSMQIIAL 464 (497)
Q Consensus 437 ~l~~~~~~g~~g~~~a~~i~~~~~~~~~ 464 (497)
+.....+.+....++......++..++.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 441 LVTLYNAKSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HGGGGGGSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3333333454555544444444444333
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=53.29 E-value=1.4e+02 Score=27.67 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--hhHHHHHHHHHHHH
Q 010912 47 QIWLAGPLIAVSLLQYCLQVISIMFVGHLG--ELALSSASIASSFA 90 (497)
Q Consensus 47 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg--~~~~~~~~~~~~i~ 90 (497)
+.....-.++..+...........+..++| +.+.+.......+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~ 73 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFG 73 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 333333344444444444444444455554 55555544444333
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.04 E-value=63 Score=18.60 Aligned_cols=16 Identities=0% Similarity=-0.010 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 010912 224 GAALSITISNWVNVFF 239 (497)
Q Consensus 224 g~~~a~~i~~~~~~~~ 239 (497)
|+.++.+.+-.+...+
T Consensus 15 GiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 15 AVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHH
Confidence 3444444433333333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=22.77 E-value=4.5e+02 Score=24.16 Aligned_cols=38 Identities=21% Similarity=0.041 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC--hhHHHHH
Q 010912 46 KQIWLAGPLIAVSLLQYCLQVISIMFVGH-LG--ELALSSA 83 (497)
Q Consensus 46 ~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg--~~~~~~~ 83 (497)
.++...+..++..............++.. +| +.+.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 293 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWA 293 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 44444444444444444333333344443 43 4444443
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=19.28 E-value=1.2e+02 Score=18.06 Aligned_cols=6 Identities=33% Similarity=0.390 Sum_probs=2.4
Q ss_pred HHHHhh
Q 010912 241 AMYIKF 246 (497)
Q Consensus 241 ~~~~~~ 246 (497)
..+++|
T Consensus 32 ~~~~RR 37 (44)
T 2jwa_A 32 GILIKR 37 (44)
T ss_dssp HHHHHH
T ss_pred Hhheeh
Confidence 344443
No 9
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=15.57 E-value=42 Score=23.16 Aligned_cols=71 Identities=8% Similarity=-0.107 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCcccCcCCCCCCCcchhhhhhcchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010912 1 MERGDQKSSLQSPLILSNERGHEFDGETSQRQSICSRANVIEEATKQIWLAGPLIAVSLLQYCLQVISIMF 71 (497)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~i~~~~ 71 (497)
|.|.+++.++.++--.+-++..+..++..+......+...++..+++.+.+--..++-++.-+.+++-.++
T Consensus 1 ~~~~~~k~~~~~~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI 71 (80)
T 2ww9_B 1 MARASEKGEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLI 71 (80)
T ss_dssp --------------------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.69 E-value=2.7e+02 Score=19.06 Aligned_cols=46 Identities=4% Similarity=0.021 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH-------hCCcHHHHHHHHhhhcccccc
Q 010912 445 GGMGLWMGIICGLSMQIIALVTVIA-------TTNWDHEATNALHRAQRTDSL 490 (497)
Q Consensus 445 g~~g~~~a~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 490 (497)
.+.++..+.+.+.++..++.+..++ |+.+++.-++..+..-+++.+
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~~N 61 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANN 61 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Done!