BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010913
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 127/202 (62%), Gaps = 21/202 (10%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY +GIH EM+ DKVRT+SYR I +NP + K VV+D+GCGTGILS+FAA+AGA
Sbjct: 10 YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 69
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
+VIAV+ SE + A I + N + +++G +EE+ ++
Sbjct: 70 KVIAVDQSEILYQ-AMDIIRLNKL-------------EDTIVLIKGKIEEVSLPVE---- 111
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM---FVAGFGRGGTSLP 438
VDV++SEWMGY LL+ESML SVL+A+ ++L GG++ PD T+ V+ + +
Sbjct: 112 KVDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIA 171
Query: 439 FWENVYGFTMSCVGREVVQDAA 460
FW++VYGF MSC+ + V+ +A
Sbjct: 172 FWDDVYGFNMSCMKKAVIPEAV 193
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 129/213 (60%), Gaps = 22/213 (10%)
Query: 249 KLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGT 308
K +A+D+ + YF SY+ FGIH EM+ D+VRT +YR ++ N L K VV+D+G GT
Sbjct: 10 KPNAEDMTS-KDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 68
Query: 309 GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368
GIL +FAA+AGA +VI +E S ++ A +I K N + +++G
Sbjct: 69 GILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKL-------------DHVVTIIKGK 114
Query: 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA 428
VEE+ ++ VD+++SEWMGYCL YESML++VL ARD+WL P G I PD AT++V
Sbjct: 115 VEEV----ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVT 170
Query: 429 GF---GRGGTSLPFWENVYGFTMSCVGREVVQD 458
+ +WENVYGF MSC+ +++
Sbjct: 171 AIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKE 203
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 129/213 (60%), Gaps = 22/213 (10%)
Query: 249 KLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGT 308
K +A+D+ + YF SY+ FGIH EM+ D+VRT +YR ++ N L K VV+D+G GT
Sbjct: 13 KPNAEDMTS-KDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 71
Query: 309 GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368
GIL +FAA+AGA +VI +E S ++ A +I K N + +++G
Sbjct: 72 GILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKL-------------DHVVTIIKGK 117
Query: 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA 428
VEE+ ++ VD+++SEWMGYCL YESML++VL ARD+WL P G I PD AT++V
Sbjct: 118 VEEV----ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVT 173
Query: 429 GF---GRGGTSLPFWENVYGFTMSCVGREVVQD 458
+ +WENVYGF MSC+ +++
Sbjct: 174 AIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKE 206
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 129/213 (60%), Gaps = 22/213 (10%)
Query: 249 KLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGT 308
K +A+D+ + YF SY+ FGIH E++ D+VRT +YR ++ N L K VV+D+G GT
Sbjct: 19 KPNAEDMTS-KDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 77
Query: 309 GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368
GIL +FAA+AGA +VI +E S ++ A +I K N + +++G
Sbjct: 78 GILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKL-------------DHVVTIIKGK 123
Query: 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA 428
VEE+ ++ VD+++SEWMGYCL YESML++VL ARD+WL P G I PD AT++V
Sbjct: 124 VEEV----ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVT 179
Query: 429 GF---GRGGTSLPFWENVYGFTMSCVGREVVQD 458
+ +WENVYGF MSC+ +++
Sbjct: 180 AIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKE 212
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 127/202 (62%), Gaps = 21/202 (10%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY +GIH EM+ DK+RT+SYR I +NP + K VV+D+GCGTGILS+FAA+AGA
Sbjct: 29 YFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 88
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
+V+ V+ SE + A I + N E I +++G +EE+ +
Sbjct: 89 KVLGVDQSEILYQ-AMDIIRLNKL-------EDTIT------LIKGKIEEV----HLPVE 130
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM---FVAGFGRGGTSLP 438
VDV++SEWMGY LL+ESML SVL+A++++L GG++ PD T+ V+ + +
Sbjct: 131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIA 190
Query: 439 FWENVYGFTMSCVGREVVQDAA 460
FW++VYGF MSC+ + V+ +A
Sbjct: 191 FWDDVYGFKMSCMKKAVIPEAV 212
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 129/213 (60%), Gaps = 22/213 (10%)
Query: 249 KLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGT 308
K +A+D+ + YF SY+ FGIH EM+ D+VRT +YR ++ N L K VV+D+G GT
Sbjct: 23 KPNAEDMTS-KDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 81
Query: 309 GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368
GIL +FAA+AGA +VI +E S ++ A +I K N + +++G
Sbjct: 82 GILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKL-------------DHVVTIIKGK 127
Query: 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA 428
VEE+ ++ VD+++SEWMGYCL Y+SML++VL ARD+WL P G I PD AT++V
Sbjct: 128 VEEV----ELPVEKVDIIISEWMGYCLFYQSMLNTVLHARDKWLAPDGLIFPDRATLYVT 183
Query: 429 GF---GRGGTSLPFWENVYGFTMSCVGREVVQD 458
+ +WENVYGF MSC+ +++
Sbjct: 184 AIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKE 216
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 21/191 (10%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF SY +GIH EM+ D VRT SYR AI++N L K +V+D+GCGTGILS+FAA+ GA
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
VI V+ S + +A ++ + N F + K+ +++G +E++ +
Sbjct: 63 HVIGVDMS-SIIEMAKELVELNGF-------------SDKITLLRGKLEDV----HLPFP 104
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRG---GTSLP 438
VD+++SEWMGY LLYESM+ +VL+ARD +L GG I PD ++ +AG L
Sbjct: 105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLN 164
Query: 439 FWENVYGFTMS 449
+W++VYGF S
Sbjct: 165 YWQDVYGFDYS 175
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 125/213 (58%), Gaps = 24/213 (11%)
Query: 244 RVSLLKLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMD 303
R + L+ + ++ ++ Y+ YS +H EMI+D+VRTD+YR IL N + ++G V+D
Sbjct: 30 REAALERPRRTKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLD 89
Query: 304 IGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363
+G GTGILS+F AQAGA RV AVEAS + A ++ + N ++
Sbjct: 90 VGAGTGILSIFCAQAGARRVYAVEAS-AIWQQAREVVRFNGL-------------EDRVH 135
Query: 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423
V+ G V E++++ P VD +VSEWMGY LL+ESMLSSVL AR +WLK GG +LP +A
Sbjct: 136 VLPGPV----ETVEL-PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASA 190
Query: 424 TMFVAGFGRGGTS--LPFWENV---YGFTMSCV 451
+F+ L FW V YG MSC+
Sbjct: 191 ELFIVPISDQMLEWRLGFWSQVKQHYGVDMSCL 223
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 106/167 (63%), Gaps = 19/167 (11%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF +YS ++M+SD+VR D+Y A+ +N +G V+D+G G+GIL++++AQAGA
Sbjct: 28 YFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGAR 87
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
+V AVEA+ KMA A + K N N+++ +EV++G VE++ P
Sbjct: 88 KVYAVEAT-KMADHARALVKAN-----------NLDHI--VEVIEGSVEDIS-----LPE 128
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA 428
VDV++SEWMGY LL ESM SV+ ARD+WLKP G + P A M++A
Sbjct: 129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLA 175
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 20/169 (11%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF Y + M+ D VRT +Y++AIL+N + K +V+D+GCG+GILS FAAQAGA
Sbjct: 15 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 74
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
++ AVEAS MA A + K N N ++ V+ G VEE+ P
Sbjct: 75 KIYAVEAS-TMAQHAEVLVKSN-------------NLTDRIVVIPGKVEEVS-----LPE 115
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF 430
VD+++SE MGY L E ML S L A+ ++LKP G + P + +A F
Sbjct: 116 QVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPF 163
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 20/169 (11%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF Y + M+ D VRT +Y++AIL+N + K +V+D+GCG+GILS FAAQAGA
Sbjct: 11 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 70
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
++ AVEAS MA A + K N N ++ V+ G VEE+ P
Sbjct: 71 KIYAVEAS-TMAQHAEVLVKSN-------------NLTDRIVVIPGKVEEVS-----LPE 111
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF 430
VD+++SE MGY L E ML S L A+ ++LKP G + P + +A F
Sbjct: 112 QVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPF 159
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 20/169 (11%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF Y + M+ D VRT +Y++AIL+N + K +V+D+GCG+GILS FAAQAGA
Sbjct: 10 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 69
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
++ AVEAS MA A + K N N ++ V+ G VEE+ P
Sbjct: 70 KIYAVEAS-TMAQHAEVLVKSN-------------NLTDRIVVIPGKVEEVS-----LPE 110
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF 430
VD+++SE MGY L E ML S L A+ ++LKP G + P + +A F
Sbjct: 111 QVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPF 158
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 20/169 (11%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF Y + M+ D VRT +Y++AIL+N + K +V+D+GCG+GILS FAAQAGA
Sbjct: 123 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 182
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
++ AVEAS MA A + K N N ++ V+ G VEE+ P
Sbjct: 183 KIYAVEAS-TMAQHAEVLVKSN-------------NLTDRIVVIPGKVEEVS-----LPE 223
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF 430
VD+++SE MGY L E ML S L A+ ++LKP G + P + +A F
Sbjct: 224 QVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPF 271
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 20/169 (11%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
YF Y + M+ D VRT +Y++AIL+N + K +V+D+GCG+GILS FAAQAGA
Sbjct: 6 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 65
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381
++ AVEAS MA A + K N N ++ V+ G VEE+ P
Sbjct: 66 KIYAVEAS-TMAQHAEVLVKSN-------------NLTDRIVVIPGKVEEVS-----LPE 106
Query: 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF 430
VD+++SE MGY L E ML S L A+ ++LKP G + P + +A F
Sbjct: 107 QVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPF 154
>pdb|1WIR|A Chain A, Solution Structure Of The C2h2 Zinc Finger Domain Of The
Protein Arginine N-methyltransferase 3 From Mus Musculus
Length = 121
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 20/102 (19%)
Query: 49 CLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICG 108
CLFCD ++S + F HC+L H F+ S+ + L+FYG KLIN+IR
Sbjct: 18 CLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIR------------ 65
Query: 109 LTCQSNQDLQNHLHEAYNLKETKLRWDKEKYLKPFMQDDKLL 150
L+N E N + W+K++YLKP ++DD LL
Sbjct: 66 --------LKNPTVEYMNSIYNPVPWEKDEYLKPVLEDDLLL 99
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360
V+D+ CGTGI +L A+ G V+ ++ E+M VA + AK+ +
Sbjct: 45 VLDLACGTGIPTLELAERGYE-VVGLDLHEEMLRVARRKAKERNL--------------- 88
Query: 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420
K+E +QG V E+ + + + +V + S M + E L + + LKPGG +
Sbjct: 89 KIEFLQGDVLEI--AFKNEFDAVTMFFSTIMYFD---EEDLRKLFSKVAEALKPGGVFIT 143
Query: 421 DTATMFVAG 429
D F G
Sbjct: 144 DFPCWFYGG 152
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS 321
+F YS G E + + R + E + G ++D+GCG G +A + GAS
Sbjct: 12 FFAGYSQLGRSIEGLDGAAEWPALRAXLPE----VGGLRIVDLGCGFGWFCRWAHEHGAS 67
Query: 322 RVIAVEASEKMAAVATQIAKDNDFWWDR 349
V+ ++ SEK A A D ++R
Sbjct: 68 YVLGLDLSEKXLARARAAGPDTGITYER 95
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
V+D+GCG G ++AA+ GA +V+ ++ SE+M A +
Sbjct: 47 TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKR 85
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
++G VV D+G GTG+LS A GA VI VE ++ V +
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE 90
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFW 346
+++K V D+G G+GIL++ A + GA V+A + S++ A + A N +
Sbjct: 57 AMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY 109
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVE 327
P L+ G V ++G G G++S+ A AGA +V+A +
Sbjct: 74 QPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATD 109
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
V+D+ CGTG+ S+ + G S V++V+AS+KM A +
Sbjct: 60 VLDVACGTGVDSIMLVEEGFS-VMSVDASDKMLKYALK 96
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 23/162 (14%)
Query: 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
++ R+A+ L A + DIGCGTG +LF A ++ ++ + +
Sbjct: 32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE---- 87
Query: 343 NDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS 402
N A + V+G+ + +++ Q +D++ SE Y + +E ++
Sbjct: 88 ------------NAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEGAIYNIGFERGMN 134
Query: 403 SVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVY 444
++LK GG I A+ F + R FW + Y
Sbjct: 135 E----WSKYLKKGGFIAVSEASWFTS--ERPAEIEDFWMDAY 170
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 23/162 (14%)
Query: 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342
++ R+A+ L A + DIGCGTG +LF A ++ ++ + +
Sbjct: 38 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE---- 93
Query: 343 NDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS 402
N A + V+G+ + +++ Q +D++ SE Y + +E ++
Sbjct: 94 ------------NAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEGAIYNIGFERGMN 140
Query: 403 SVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVY 444
++LK GG I A+ F + R FW + Y
Sbjct: 141 E----WSKYLKKGGFIAVSEASWFTS--ERPAEIEDFWMDAY 176
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 265 SYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVI 324
+Y F + + V + +LE + G + DIGCGTG +L A V
Sbjct: 3 AYEQFAYVYDELXQDVPYPEWVAWVLEQ--VEPGKRIADIGCGTGTATLLLAD--HYEVT 58
Query: 325 AVEASEKMAAVATQIAKDN----DFW 346
V+ SE+ +A + A + DFW
Sbjct: 59 GVDLSEEXLEIAQEKAXETNRHVDFW 84
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
V+D+ CGTG+ S+ + G S V +V+AS+KM A +
Sbjct: 60 VLDVACGTGVDSIMLVEEGFS-VTSVDASDKMLKYALK 96
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
V+D+ CGTG+ S+ + G S V +V+AS+KM A +
Sbjct: 61 VLDVACGTGVDSIMLVEEGFS-VTSVDASDKMLKYALK 97
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
V+D+ CGTG+ S+ + G S V +V+AS+KM A +
Sbjct: 60 VLDVACGTGVDSIMLVEEGFS-VTSVDASDKMLKYALK 96
>pdb|1R74|A Chain A, Crystal Structure Of Human Glycine N-Methyltransferase
pdb|1R74|B Chain B, Crystal Structure Of Human Glycine N-Methyltransferase
Length = 294
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
V+D+ CGTG+ S+ + G S V +V+AS+KM A +
Sbjct: 60 VLDVACGTGVDSIMLVEEGFS-VTSVDASDKMLKYALK 96
>pdb|2AZT|A Chain A, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
pdb|2AZT|B Chain B, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
Length = 295
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338
V+D+ CGTG+ S+ + G S V +V+AS+KM A +
Sbjct: 61 VLDVACGTGVDSIMLVEEGFS-VTSVDASDKMLKYALK 97
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 292 NPSLMKGAVVMDIGCGTGILSL-FAAQAGASRVIAVEASEKMAAVATQ 338
P +G V+D+GC G L+L A + G SR + ++ ++ A Q
Sbjct: 41 KPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRXVGLDIDSRLIHSARQ 88
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 262 YFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILS-LFAAQAGA 320
Y + G + + R ++R AI E + G +++IGCG G LS + A Q G+
Sbjct: 8 YITDLXALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGS 67
Query: 321 S 321
S
Sbjct: 68 S 68
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 296 MKGAVVMDIGCGTG----ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQ 351
++GA V+D+GCGTG + S + G +VI V+ + VA + + + +
Sbjct: 82 LEGATVLDLGCGTGRDVYLASKLVGEHG--KVIGVDMLDNQLEVARKYVEYHAEKFFGSP 139
Query: 352 SEGNINNAGKMEVVQGMVEEL--GESMQIQPHSVDVLVS 388
S N+ ++G +E L E + SVD+++S
Sbjct: 140 SRSNVR------FLKGFIENLATAEPEGVPDSSVDIVIS 172
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEAS---EKMAAVATQI 339
AI+ +L KG+V+ DIG GTG S+ A G V AVE S + A V Q+
Sbjct: 25 AIINLLNLPKGSVIADIGAGTGGYSVALANQGLF-VYAVEPSIVXRQQAVVHPQV 78
>pdb|2XVA|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|C Chain C, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVA|D Chain D, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sinefungin
pdb|2XVM|A Chain A, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
pdb|2XVM|B Chain B, Crystal Structure Of The Tellurite Detoxification Protein
Tehb From E. Coli In Complex With Sah
Length = 199
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 277 SDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG------------ASRVI 324
+DK +LE ++K +D+GCG G SL+ A G + V
Sbjct: 12 TDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVE 71
Query: 325 AVEASEKMAAVATQIAKDNDFWWDR 349
+++ E + + T++ N+ +DR
Sbjct: 72 RIKSIENLDNLHTRVVDLNNLTFDR 96
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE 353
+L +++ D+GCGTG ++ AQ ++ + DF+ P
Sbjct: 44 NLTNKSLIADLGCGTGGQTMILAQHVPGKITGI-----------------DFF---PGFI 83
Query: 354 GNIN-NAGKMEV---VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD 409
N NA K+ + V+G+V + + + + S+D++ SE Y + +E L
Sbjct: 84 ERFNKNAEKLNLQNRVKGIVGSM-DDLSFEKDSLDLIWSEGAIYNIGFERGLKE----WR 138
Query: 410 QWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREV--VQDAAGIPI 464
+LKPGG + + F R FW + Y + V +V +Q A IP+
Sbjct: 139 NYLKPGGYLAVSESVWFTD--QRPAEIHDFWMSAYT-EIDTVPNKVAQIQKAGYIPV 192
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 262 YFGSYSSFGIHREMISDKVRTD------SYRQAILENPSLMKGAVVMDIGCGTGILSLFA 315
YF ++ G + + D Y + +L+ + G ++D+GCGTG L+
Sbjct: 16 YFQGXTNLGTAKNFWDATLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKI 75
Query: 316 AQAGA 320
AQ+GA
Sbjct: 76 AQSGA 80
>pdb|4IBO|A Chain A, Crystal Structure Of A Putative Gluconate Dehydrogenase
From Agrobacterium Tumefaciens (Target Efi-506446)
pdb|4IBO|B Chain B, Crystal Structure Of A Putative Gluconate Dehydrogenase
From Agrobacterium Tumefaciens (Target Efi-506446)
pdb|4IBO|C Chain C, Crystal Structure Of A Putative Gluconate Dehydrogenase
From Agrobacterium Tumefaciens (Target Efi-506446)
pdb|4IBO|D Chain D, Crystal Structure Of A Putative Gluconate Dehydrogenase
From Agrobacterium Tumefaciens (Target Efi-506446)
Length = 271
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 216 SSEKMIVNGFDSREHIGAFDSKLEDKDSRVSLLKLSAKDIKKVNESYFGSYSSFGIHREM 275
++++MI G+ +IG+ S+L + V+ ++ IK + + ++ +GI
Sbjct: 145 AAKRMIPRGYGKIVNIGSLTSEL--ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANA 202
Query: 276 ISDKVRTDSYRQAILENP 293
I QA+++NP
Sbjct: 203 IGPGYMLTDMNQALIDNP 220
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335
+ G V+D+ G+G L L A GA+ V+ VE+ ++ AAV
Sbjct: 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAV 82
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE 353
+L +++ D+GCGTG ++ AQ ++ + DF+ P
Sbjct: 49 NLTNKSLIADLGCGTGGQTMILAQHVPGKITGI-----------------DFF---PGFI 88
Query: 354 GNIN-NAGKMEV---VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD 409
N NA K+ + V+G+V + + + + S+D++ SE Y + +E L
Sbjct: 89 ERFNKNAEKLNLQNRVKGIVGSM-DDLSFEKDSLDLIWSEGAIYNIGFERGLKE----WR 143
Query: 410 QWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREV--VQDAAGIPI 464
+LKPGG + + F R FW + Y + V +V +Q A IP+
Sbjct: 144 NYLKPGGYLAVSESVWFTD--QRPAEIHDFWMSAYT-EIDTVPNKVAQIQKAGYIPV 197
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIA-VEASEKMAAVATQIAKDN 343
ENP ++D+G GTG+LS F + V+ SEKM +A + N
Sbjct: 44 ENPD------ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN 91
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339
+E+ +L K VV++IG G GIL+ A+ A +V +E + + A ++
Sbjct: 16 VESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYANKL 64
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 260 ESYFGSYSSFGIHREMISDKVRTDSY---RQAILENPSLMKGAVVMDIGCGTGILSL-FA 315
E ++G YS G+ + + D Q +L + V+D+GCG G+LS+ FA
Sbjct: 156 EKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFA 215
Query: 316 AQAGASRVI-------AVEASEKMAA 334
+ R+ AVEAS A
Sbjct: 216 RHSPKIRLTLCDVSAPAVEASRATLA 241
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339
+E+ +L K VV++IG G GIL+ A+ A +V +E + + A ++
Sbjct: 14 VESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYANKL 62
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339
+E+ +L K VV++IG G GIL+ A+ A +V +E + + A ++
Sbjct: 43 VESANLTKDDVVLEIGLGKGILTEELAK-NAKKVYVIEIDKSLEPYANKL 91
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
V+D+GC G SL A GA+ ++ ++ ++ V +A++N
Sbjct: 70 VLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEEN 111
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 290 LENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339
L+ L KG V++IG G G + A+ +V++VE +EK A+++
Sbjct: 63 LDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKXYNYASKL 111
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343
+ G V+D+ TG ++ AA AGA VI ++ S + A + AK N
Sbjct: 215 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN 263
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 277 SDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG 319
+DK +LE ++K +D+GCG G SL+ A G
Sbjct: 13 TDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG 55
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
Clostridium Aminobutyricum And Coa
Length = 448
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 246 SLLKLSAKDIKKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILE--NPSLMKGAVVMD 303
S L+L I S GIH EMISD V D Y +++ S+ KG + +
Sbjct: 210 STLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGV-VDLYEAGVIDCSQKSIDKGKMAIT 268
Query: 304 IGCGTGILSLFAA 316
GT L FAA
Sbjct: 269 FLMGTKRLYDFAA 281
>pdb|1URT|A Chain A, Murine Carbonic Anhydrase V
Length = 248
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 70 HCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGL 109
H D H+ EL L + S K NY ++ V EN + G+
Sbjct: 86 HAVDGHTYPAELHLVHWNSTKYENYKKASVGENGLAVIGV 125
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-DF 345
V+D+GC G SL A GA+ ++ ++ ++ V +A++N DF
Sbjct: 70 VLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENPDF 114
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-DF 345
V+D+GC G SL A GA+ ++ ++ ++ V +A++N DF
Sbjct: 70 VLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENPDF 114
>pdb|1DMX|A Chain A, Murine Mitochondrial Carbonic Anyhdrase V At 2.45
Angstroms Resolution
pdb|1DMX|B Chain B, Murine Mitochondrial Carbonic Anyhdrase V At 2.45
Angstroms Resolution
pdb|1DMY|A Chain A, Complex Between Murine Mitochondrial Carbonic Anyhdrase V
And The Transition State Analogue Acetazolamide
pdb|1DMY|B Chain B, Complex Between Murine Mitochondrial Carbonic Anyhdrase V
And The Transition State Analogue Acetazolamide
Length = 248
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 70 HCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGL 109
H D H+ EL L + S K NY ++ V EN + G+
Sbjct: 86 HAVDGHTYPAELHLVHWNSTKYENYKKASVGENGLAVIGV 125
>pdb|1KCS|H Chain H, Crystal Structure Of Antibody Pc282 In Complex With Ps1
Peptide
pdb|1KCV|H Chain H, Crystal Structure Of Antibody Pc282
Length = 217
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 389 EWMGYCLLY-------ESMLSSVLFARDQ-----WLKPGGAILPDTATMFVAGFGRGGTS 436
EWMGY + Y S+ S + RD +L+ DTAT + A RGGT
Sbjct: 47 EWMGY-ISYSGSTSYNPSLKSRISITRDTSKNQFFLQLNSVTTDDTATYYCA---RGGTG 102
Query: 437 LPFWENVYGFTMS 449
P+W T+S
Sbjct: 103 FPYWGTGTNVTVS 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,556,253
Number of Sequences: 62578
Number of extensions: 518008
Number of successful extensions: 1352
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 60
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)