Query 010913
Match_columns 497
No_of_seqs 486 out of 3036
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 3.6E-41 7.7E-46 332.5 12.5 206 258-485 21-229 (346)
2 KOG2482 Predicted C2H2-type Zn 100.0 6E-33 1.3E-37 267.3 4.1 151 4-156 236-391 (423)
3 KOG1500 Protein arginine N-met 99.9 8.5E-28 1.8E-32 233.0 11.7 199 259-477 139-345 (517)
4 COG2226 UbiE Methylase involve 99.8 2.8E-19 6.2E-24 172.0 13.7 126 263-419 27-153 (238)
5 COG2227 UbiG 2-polyprenyl-3-me 99.8 7.4E-19 1.6E-23 166.4 11.0 143 257-426 22-165 (243)
6 PF05185 PRMT5: PRMT5 arginine 99.8 8E-19 1.7E-23 184.6 8.9 176 271-477 152-340 (448)
7 PF01209 Ubie_methyltran: ubiE 99.7 5.8E-18 1.3E-22 164.1 9.3 125 264-419 24-150 (233)
8 PLN02396 hexaprenyldihydroxybe 99.7 4.8E-17 1E-21 164.5 14.8 154 249-425 75-238 (322)
9 PF12847 Methyltransf_18: Meth 99.7 9.4E-17 2E-21 137.4 12.6 109 297-422 1-111 (112)
10 KOG1270 Methyltransferases [Co 99.7 2.3E-16 5.1E-21 150.4 10.2 146 259-425 46-198 (282)
11 KOG2785 C2H2-type Zn-finger pr 99.7 1.2E-16 2.6E-21 158.2 7.2 112 9-129 128-248 (390)
12 KOG1540 Ubiquinone biosynthesi 99.6 2.3E-15 5E-20 142.7 13.8 118 284-419 87-211 (296)
13 PLN02233 ubiquinone biosynthes 99.6 4.4E-15 9.6E-20 146.8 14.6 117 284-420 60-180 (261)
14 TIGR00452 methyltransferase, p 99.6 5.8E-15 1.3E-19 148.8 14.9 183 279-484 103-288 (314)
15 PF08241 Methyltransf_11: Meth 99.6 3.4E-15 7.4E-20 123.0 9.9 95 302-420 1-95 (95)
16 PRK15068 tRNA mo(5)U34 methylt 99.6 1E-14 2.2E-19 148.3 14.8 123 279-422 104-226 (322)
17 PF13847 Methyltransf_31: Meth 99.6 8.7E-15 1.9E-19 132.7 12.3 108 296-423 2-111 (152)
18 PRK11036 putative S-adenosyl-L 99.6 1E-14 2.2E-19 143.8 12.8 106 296-421 43-148 (255)
19 PRK11207 tellurite resistance 99.6 1.5E-14 3.2E-19 137.2 13.4 107 292-419 25-131 (197)
20 PLN02244 tocopherol O-methyltr 99.6 1.6E-14 3.5E-19 148.2 14.3 117 285-422 101-223 (340)
21 TIGR02752 MenG_heptapren 2-hep 99.6 2E-14 4.4E-19 139.3 14.0 116 284-420 32-149 (231)
22 PF03848 TehB: Tellurite resis 99.6 1.9E-14 4.1E-19 134.4 12.8 110 289-420 22-131 (192)
23 TIGR00477 tehB tellurite resis 99.6 1.3E-14 2.9E-19 137.2 11.7 106 292-419 25-130 (195)
24 PF02353 CMAS: Mycolic acid cy 99.6 3.9E-14 8.5E-19 140.5 13.5 120 284-425 49-169 (273)
25 PRK00107 gidB 16S rRNA methylt 99.5 6.3E-14 1.4E-18 131.4 13.2 101 295-421 43-144 (187)
26 COG2230 Cfa Cyclopropane fatty 99.5 5.4E-14 1.2E-18 137.9 13.0 115 284-420 59-174 (283)
27 PRK10258 biotin biosynthesis p 99.5 7.4E-14 1.6E-18 137.2 12.1 111 285-422 30-140 (251)
28 PRK11873 arsM arsenite S-adeno 99.5 8.1E-14 1.8E-18 138.6 12.1 107 294-421 74-182 (272)
29 PTZ00098 phosphoethanolamine N 99.5 1E-13 2.3E-18 137.2 12.7 112 286-421 41-155 (263)
30 PRK14103 trans-aconitate 2-met 99.5 8E-14 1.7E-18 137.4 11.8 105 288-421 20-125 (255)
31 TIGR00138 gidB 16S rRNA methyl 99.5 1.4E-13 3E-18 128.6 12.7 98 297-420 42-140 (181)
32 PF08003 Methyltransf_9: Prote 99.5 1.3E-13 2.9E-18 135.3 12.5 173 276-472 94-270 (315)
33 TIGR02469 CbiT precorrin-6Y C5 99.5 3.3E-13 7.3E-18 117.0 13.4 114 286-422 8-122 (124)
34 PRK01683 trans-aconitate 2-met 99.5 1.8E-13 4E-18 134.9 12.6 111 285-422 19-130 (258)
35 PF05175 MTS: Methyltransferas 99.5 1.7E-13 3.8E-18 126.7 11.1 104 297-419 31-137 (170)
36 PF05401 NodS: Nodulation prot 99.5 1.1E-13 2.3E-18 128.1 9.2 130 285-445 31-160 (201)
37 PF13649 Methyltransf_25: Meth 99.5 1.2E-13 2.6E-18 116.4 8.7 97 301-416 1-101 (101)
38 PRK12335 tellurite resistance 99.5 3E-13 6.5E-18 135.6 12.7 102 296-419 119-220 (287)
39 PLN02490 MPBQ/MSBQ methyltrans 99.5 3.4E-13 7.4E-18 137.1 13.1 115 282-420 97-213 (340)
40 PF06325 PrmA: Ribosomal prote 99.5 1.4E-13 3E-18 137.3 10.1 110 282-420 148-257 (295)
41 COG2264 PrmA Ribosomal protein 99.5 1.4E-13 3E-18 136.2 9.7 102 296-421 161-262 (300)
42 PRK05134 bifunctional 3-demeth 99.5 8E-13 1.7E-17 128.3 14.2 139 256-422 13-151 (233)
43 TIGR01983 UbiG ubiquinone bios 99.5 1.2E-12 2.6E-17 126.1 14.5 142 258-422 8-149 (224)
44 PRK15451 tRNA cmo(5)U34 methyl 99.4 5.6E-13 1.2E-17 130.8 12.3 107 296-422 55-164 (247)
45 PRK15001 SAM-dependent 23S rib 99.4 1.2E-12 2.6E-17 135.0 14.6 122 284-421 215-339 (378)
46 PF13659 Methyltransf_26: Meth 99.4 6.9E-13 1.5E-17 114.3 10.6 109 298-421 1-114 (117)
47 PLN02336 phosphoethanolamine N 99.4 8.5E-13 1.8E-17 141.6 13.6 111 289-422 258-369 (475)
48 PRK08317 hypothetical protein; 99.4 1.8E-12 3.9E-17 125.3 13.5 119 283-423 5-125 (241)
49 TIGR00537 hemK_rel_arch HemK-r 99.4 1.3E-12 2.8E-17 121.9 11.6 104 295-420 17-138 (179)
50 PRK06922 hypothetical protein; 99.4 1.7E-12 3.6E-17 139.8 13.9 111 294-421 415-536 (677)
51 PRK00121 trmB tRNA (guanine-N( 99.4 1.3E-12 2.9E-17 124.3 11.4 110 297-422 40-156 (202)
52 PRK00377 cbiT cobalt-precorrin 99.4 2.7E-12 5.9E-17 121.7 13.2 117 285-423 28-146 (198)
53 TIGR00406 prmA ribosomal prote 99.4 2E-12 4.3E-17 129.8 12.8 100 296-420 158-257 (288)
54 PF08242 Methyltransf_12: Meth 99.4 7E-14 1.5E-18 117.2 1.9 98 302-418 1-99 (99)
55 PF13489 Methyltransf_23: Meth 99.4 7.9E-13 1.7E-17 120.0 8.9 98 295-424 20-117 (161)
56 PRK14967 putative methyltransf 99.4 3E-12 6.5E-17 123.7 13.4 107 293-420 32-157 (223)
57 PRK08287 cobalt-precorrin-6Y C 99.4 4E-12 8.7E-17 119.3 13.8 111 284-420 18-129 (187)
58 PRK05785 hypothetical protein; 99.4 1.3E-12 2.8E-17 126.5 10.7 91 297-416 51-141 (226)
59 KOG4300 Predicted methyltransf 99.4 1.5E-12 3.3E-17 119.9 10.2 102 299-420 78-180 (252)
60 COG4123 Predicted O-methyltran 99.4 1.9E-12 4.2E-17 124.9 11.5 114 293-421 40-169 (248)
61 TIGR00740 methyltransferase, p 99.4 3.3E-12 7.2E-17 124.6 13.0 107 296-422 52-161 (239)
62 PRK13944 protein-L-isoaspartat 99.4 4.8E-12 1E-16 120.7 13.3 111 284-420 59-171 (205)
63 smart00828 PKS_MT Methyltransf 99.4 2.2E-12 4.7E-17 124.5 10.9 103 299-422 1-104 (224)
64 PRK00216 ubiE ubiquinone/menaq 99.4 4.5E-12 9.7E-17 122.9 13.0 117 284-420 38-156 (239)
65 PRK13942 protein-L-isoaspartat 99.4 4.8E-12 1E-16 121.3 12.4 110 284-420 63-174 (212)
66 TIGR00080 pimt protein-L-isoas 99.4 4.8E-12 1E-16 121.6 12.1 109 286-421 66-176 (215)
67 TIGR02072 BioC biotin biosynth 99.4 4.7E-12 1E-16 122.6 11.8 102 296-422 33-135 (240)
68 TIGR00091 tRNA (guanine-N(7)-) 99.3 6E-12 1.3E-16 119.0 11.0 112 297-423 16-133 (194)
69 PRK11705 cyclopropane fatty ac 99.3 2E-11 4.4E-16 127.0 15.9 112 285-422 155-267 (383)
70 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.2E-11 2.5E-16 118.6 13.2 114 284-420 26-141 (223)
71 COG2242 CobL Precorrin-6B meth 99.3 1.6E-11 3.5E-16 112.8 13.0 118 283-425 20-138 (187)
72 TIGR01177 conserved hypothetic 99.3 1.1E-11 2.4E-16 126.8 13.0 117 285-421 170-293 (329)
73 TIGR03533 L3_gln_methyl protei 99.3 1.8E-11 4E-16 122.4 14.3 109 296-422 120-251 (284)
74 PRK00517 prmA ribosomal protei 99.3 8.9E-12 1.9E-16 122.5 11.9 95 296-421 118-212 (250)
75 PRK09489 rsmC 16S ribosomal RN 99.3 1.3E-11 2.8E-16 126.4 13.5 115 285-420 184-301 (342)
76 TIGR02021 BchM-ChlM magnesium 99.3 1.7E-11 3.8E-16 117.9 13.5 115 285-421 41-157 (219)
77 PLN02336 phosphoethanolamine N 99.3 9.6E-12 2.1E-16 133.5 12.7 116 287-422 27-142 (475)
78 COG4106 Tam Trans-aconitate me 99.3 4.3E-12 9.3E-17 117.9 8.5 114 281-422 15-129 (257)
79 PRK07402 precorrin-6B methylas 99.3 2E-11 4.4E-16 115.5 13.4 116 284-423 27-143 (196)
80 PF12756 zf-C2H2_2: C2H2 type 99.3 6.9E-13 1.5E-17 111.0 2.6 95 48-147 1-99 (100)
81 PRK04266 fibrillarin; Provisio 99.3 2.3E-11 4.9E-16 117.5 13.3 108 292-421 67-175 (226)
82 TIGR03840 TMPT_Se_Te thiopurin 99.3 2.1E-11 4.5E-16 116.8 12.2 116 296-419 33-149 (213)
83 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.6E-11 3.5E-16 126.2 12.1 112 294-424 119-237 (390)
84 PRK15128 23S rRNA m(5)C1962 me 99.3 1.5E-11 3.2E-16 128.2 11.9 117 296-425 219-342 (396)
85 COG4076 Predicted RNA methylas 99.3 5.1E-12 1.1E-16 114.6 7.1 138 270-433 9-146 (252)
86 PRK11805 N5-glutamine S-adenos 99.3 3.6E-11 7.8E-16 121.5 14.1 106 298-421 134-262 (307)
87 TIGR00536 hemK_fam HemK family 99.3 3.5E-11 7.5E-16 120.6 13.6 124 282-423 98-245 (284)
88 PRK14968 putative methyltransf 99.3 3.7E-11 8E-16 112.2 12.9 107 296-420 22-146 (188)
89 PRK13255 thiopurine S-methyltr 99.3 3.8E-11 8.2E-16 115.5 12.7 117 295-419 35-152 (218)
90 COG2813 RsmC 16S RNA G1207 met 99.3 3.8E-11 8.3E-16 118.3 12.7 119 281-419 142-263 (300)
91 PLN03075 nicotianamine synthas 99.3 4.7E-11 1E-15 118.6 13.3 106 296-422 122-233 (296)
92 TIGR03534 RF_mod_PrmC protein- 99.3 6.4E-11 1.4E-15 115.9 14.2 118 283-420 74-215 (251)
93 TIGR03587 Pse_Me-ase pseudamin 99.3 3.8E-11 8.2E-16 114.4 12.0 98 295-419 41-139 (204)
94 PRK10909 rsmD 16S rRNA m(2)G96 99.3 6.4E-11 1.4E-15 112.1 13.3 121 282-423 37-160 (199)
95 PRK14966 unknown domain/N5-glu 99.3 3.9E-11 8.4E-16 124.2 12.6 131 269-420 225-379 (423)
96 PRK00312 pcm protein-L-isoaspa 99.3 6E-11 1.3E-15 113.6 13.0 109 285-421 66-174 (212)
97 smart00138 MeTrc Methyltransfe 99.2 2E-11 4.4E-16 120.9 9.2 123 295-422 97-242 (264)
98 KOG1271 Methyltransferases [Ge 99.2 3.2E-11 6.9E-16 109.2 9.3 117 295-428 64-187 (227)
99 PRK11783 rlmL 23S rRNA m(2)G24 99.2 3.7E-11 7.9E-16 134.3 11.4 113 296-423 537-657 (702)
100 TIGR00446 nop2p NOL1/NOP2/sun 99.2 9.7E-11 2.1E-15 116.1 13.2 116 294-427 68-204 (264)
101 PRK11088 rrmA 23S rRNA methylt 99.2 4.5E-11 9.7E-16 119.0 10.7 93 296-421 84-180 (272)
102 PRK14904 16S rRNA methyltransf 99.2 9.6E-11 2.1E-15 124.6 13.8 116 292-426 245-381 (445)
103 PRK14901 16S rRNA methyltransf 99.2 7.9E-11 1.7E-15 124.8 13.1 122 291-426 246-388 (434)
104 PRK14903 16S rRNA methyltransf 99.2 8.4E-11 1.8E-15 124.3 13.1 118 292-426 232-370 (431)
105 PRK09328 N5-glutamine S-adenos 99.2 1.7E-10 3.7E-15 114.7 14.1 124 278-420 89-236 (275)
106 PRK10901 16S rRNA methyltransf 99.2 1.1E-10 2.4E-15 123.4 13.5 120 291-427 238-377 (427)
107 PRK07580 Mg-protoporphyrin IX 99.2 1.4E-10 3E-15 112.1 13.1 103 295-419 61-163 (230)
108 TIGR02716 C20_methyl_CrtF C-20 99.2 1.3E-10 2.8E-15 117.7 13.4 114 285-421 137-253 (306)
109 PLN02585 magnesium protoporphy 99.2 1E-10 2.2E-15 118.2 12.5 105 296-419 143-247 (315)
110 COG1092 Predicted SAM-dependen 99.2 6.4E-11 1.4E-15 122.1 11.1 117 297-425 217-339 (393)
111 PRK01544 bifunctional N5-gluta 99.2 1.3E-10 2.8E-15 125.1 13.5 107 297-421 138-268 (506)
112 PLN02781 Probable caffeoyl-CoA 99.2 8.1E-11 1.7E-15 114.5 10.7 111 294-423 65-179 (234)
113 PRK14902 16S rRNA methyltransf 99.2 1.3E-10 2.9E-15 123.6 12.9 123 288-427 241-384 (444)
114 TIGR03704 PrmC_rel_meth putati 99.2 2.7E-10 5.9E-15 112.0 13.7 121 282-421 70-215 (251)
115 PRK13943 protein-L-isoaspartat 99.2 2.8E-10 6.1E-15 115.3 13.9 108 286-420 69-178 (322)
116 COG2890 HemK Methylase of poly 99.2 2.2E-10 4.8E-15 114.2 12.8 101 300-421 113-237 (280)
117 TIGR03438 probable methyltrans 99.2 2.7E-10 6E-15 115.0 13.3 120 284-422 52-177 (301)
118 PRK13168 rumA 23S rRNA m(5)U19 99.2 2.8E-10 6E-15 121.1 13.6 118 282-421 282-399 (443)
119 cd02440 AdoMet_MTases S-adenos 99.2 3.3E-10 7.2E-15 93.2 11.2 102 300-421 1-103 (107)
120 PRK04457 spermidine synthase; 99.2 2.2E-10 4.7E-15 113.4 11.8 122 284-421 52-176 (262)
121 TIGR00563 rsmB ribosomal RNA s 99.2 2.5E-10 5.4E-15 120.8 12.7 123 289-426 230-372 (426)
122 PRK06202 hypothetical protein; 99.1 2E-10 4.3E-15 111.6 10.8 99 296-419 59-164 (232)
123 PRK00811 spermidine synthase; 99.1 3.3E-10 7.1E-15 113.4 12.5 117 296-424 75-193 (283)
124 PRK11188 rrmJ 23S rRNA methylt 99.1 3.3E-10 7.2E-15 108.3 11.0 101 295-420 49-163 (209)
125 TIGR00095 RNA methyltransferas 99.1 6E-10 1.3E-14 104.8 12.6 111 296-423 48-160 (189)
126 COG2519 GCD14 tRNA(1-methylade 99.1 5E-10 1.1E-14 107.5 11.9 111 288-424 85-197 (256)
127 PHA03412 putative methyltransf 99.1 2.7E-10 5.8E-15 109.3 10.0 103 297-423 49-164 (241)
128 smart00650 rADc Ribosomal RNA 99.1 5.4E-10 1.2E-14 103.2 11.5 109 288-421 4-112 (169)
129 PF03291 Pox_MCEL: mRNA cappin 99.1 5.6E-10 1.2E-14 113.6 12.4 121 297-421 62-185 (331)
130 COG2263 Predicted RNA methylas 99.1 9.4E-10 2E-14 100.9 12.2 90 294-406 42-132 (198)
131 TIGR02081 metW methionine bios 99.1 3.4E-10 7.4E-15 106.9 9.5 97 296-418 12-108 (194)
132 PF01135 PCMT: Protein-L-isoas 99.1 2.9E-10 6.2E-15 108.4 8.6 108 285-419 60-169 (209)
133 PRK03522 rumB 23S rRNA methylu 99.1 7.9E-10 1.7E-14 112.4 12.3 101 296-420 172-272 (315)
134 KOG1501 Arginine N-methyltrans 99.1 3.7E-10 8E-15 114.3 9.6 145 272-432 35-185 (636)
135 PF10672 Methyltrans_SAM: S-ad 99.1 5.8E-10 1.3E-14 110.8 10.4 116 296-424 122-240 (286)
136 COG2518 Pcm Protein-L-isoaspar 99.1 7.2E-10 1.6E-14 104.2 10.4 108 285-420 60-167 (209)
137 PTZ00146 fibrillarin; Provisio 99.1 8.7E-10 1.9E-14 109.2 11.5 115 284-420 116-235 (293)
138 PF07021 MetW: Methionine bios 99.1 4.3E-10 9.4E-15 104.1 8.7 93 295-414 11-104 (193)
139 COG4976 Predicted methyltransf 99.1 3.8E-11 8.2E-16 112.4 1.7 115 286-425 114-228 (287)
140 TIGR00438 rrmJ cell division p 99.1 6.2E-10 1.4E-14 104.6 9.9 104 292-420 27-144 (188)
141 KOG1541 Predicted protein carb 99.1 9E-10 2E-14 102.8 10.5 102 297-421 50-159 (270)
142 TIGR00479 rumA 23S rRNA (uraci 99.1 1.1E-09 2.4E-14 116.2 12.6 117 284-421 279-395 (431)
143 KOG1975 mRNA cap methyltransfe 99.1 4.1E-10 8.8E-15 110.5 8.3 130 284-421 104-236 (389)
144 PHA03411 putative methyltransf 99.1 9.8E-10 2.1E-14 107.8 10.9 99 297-419 64-180 (279)
145 PLN02476 O-methyltransferase 99.0 1.8E-09 3.8E-14 106.9 12.1 110 295-423 116-229 (278)
146 PF05724 TPMT: Thiopurine S-me 99.0 9.2E-10 2E-14 105.8 9.4 119 293-419 33-152 (218)
147 KOG2899 Predicted methyltransf 99.0 1.8E-09 3.8E-14 102.2 10.9 127 293-419 54-206 (288)
148 PF03602 Cons_hypoth95: Conser 99.0 6.1E-10 1.3E-14 104.1 7.6 110 296-422 41-153 (183)
149 PF10294 Methyltransf_16: Puta 99.0 1.2E-09 2.5E-14 101.5 9.1 112 293-419 41-153 (173)
150 KOG2361 Predicted methyltransf 99.0 6.8E-10 1.5E-14 105.1 7.4 151 300-467 74-237 (264)
151 PRK01581 speE spermidine synth 99.0 2.5E-09 5.4E-14 108.7 11.8 118 296-423 149-269 (374)
152 PLN02366 spermidine synthase 99.0 4.2E-09 9E-14 106.3 13.1 117 296-425 90-209 (308)
153 TIGR02085 meth_trns_rumB 23S r 99.0 3.1E-09 6.7E-14 110.5 12.1 102 296-421 232-333 (374)
154 PRK13256 thiopurine S-methyltr 99.0 4.9E-09 1.1E-13 100.8 12.4 120 295-420 41-161 (226)
155 PF01596 Methyltransf_3: O-met 99.0 1.3E-09 2.9E-14 103.6 8.0 111 296-425 44-158 (205)
156 COG0742 N6-adenine-specific me 99.0 1E-08 2.3E-13 94.8 13.5 126 282-425 26-157 (187)
157 PF08704 GCD14: tRNA methyltra 99.0 3.2E-09 7E-14 103.4 10.5 110 287-421 30-145 (247)
158 PLN02672 methionine S-methyltr 99.0 3.6E-09 7.8E-14 121.0 12.3 141 279-423 99-279 (1082)
159 TIGR00417 speE spermidine synt 98.9 7.6E-09 1.6E-13 102.9 12.8 115 297-425 72-189 (270)
160 COG4122 Predicted O-methyltran 98.9 5.3E-09 1.1E-13 99.7 11.1 109 294-423 56-167 (219)
161 KOG2904 Predicted methyltransf 98.9 9.8E-09 2.1E-13 98.8 12.4 127 282-422 130-285 (328)
162 COG1041 Predicted DNA modifica 98.9 5.2E-09 1.1E-13 105.1 10.9 120 284-423 184-311 (347)
163 PRK03612 spermidine synthase; 98.9 1.2E-08 2.7E-13 110.4 12.6 119 296-424 296-417 (521)
164 PLN02589 caffeoyl-CoA O-methyl 98.8 1.4E-08 3E-13 99.2 10.1 113 294-425 76-193 (247)
165 PF02390 Methyltransf_4: Putat 98.8 1.4E-08 2.9E-13 96.1 9.2 109 300-423 20-134 (195)
166 PF02475 Met_10: Met-10+ like- 98.8 3.5E-08 7.7E-13 93.3 11.7 99 295-418 99-198 (200)
167 KOG3010 Methyltransferase [Gen 98.8 4.3E-09 9.3E-14 99.8 4.3 98 300-419 36-134 (261)
168 COG2521 Predicted archaeal met 98.8 8.3E-09 1.8E-13 97.2 5.8 127 279-419 114-242 (287)
169 PRK14896 ksgA 16S ribosomal RN 98.8 4.4E-08 9.5E-13 96.8 10.8 85 284-391 16-100 (258)
170 PRK11933 yebU rRNA (cytosine-C 98.7 9E-08 2E-12 101.7 13.2 115 294-425 110-245 (470)
171 PRK04338 N(2),N(2)-dimethylgua 98.7 4.4E-08 9.5E-13 101.8 10.4 99 298-421 58-157 (382)
172 PTZ00338 dimethyladenosine tra 98.7 6.3E-08 1.4E-12 97.2 11.1 87 284-390 23-109 (294)
173 PLN02232 ubiquinone biosynthes 98.7 3E-08 6.5E-13 90.8 7.6 79 324-420 1-79 (160)
174 PF01170 UPF0020: Putative RNA 98.7 1.3E-07 2.8E-12 88.2 11.6 119 284-419 15-148 (179)
175 COG0220 Predicted S-adenosylme 98.7 1E-07 2.2E-12 91.8 10.8 108 299-424 50-166 (227)
176 PRK00274 ksgA 16S ribosomal RN 98.7 6.6E-08 1.4E-12 96.3 9.6 84 285-390 30-113 (272)
177 PRK05031 tRNA (uracil-5-)-meth 98.7 1.5E-07 3.2E-12 97.6 12.2 101 298-421 207-319 (362)
178 PRK11727 23S rRNA mA1618 methy 98.7 1.2E-07 2.6E-12 96.0 11.0 84 297-393 114-200 (321)
179 PLN02823 spermine synthase 98.7 1.3E-07 2.9E-12 96.4 11.4 113 297-422 103-220 (336)
180 TIGR02143 trmA_only tRNA (urac 98.7 1.6E-07 3.5E-12 96.9 11.8 100 299-421 199-310 (353)
181 PRK04148 hypothetical protein; 98.7 2.5E-07 5.5E-12 81.4 11.1 100 285-415 4-104 (134)
182 TIGR00478 tly hemolysin TlyA f 98.7 1.7E-07 3.6E-12 90.6 10.9 41 295-335 73-113 (228)
183 PF01739 CheR: CheR methyltran 98.6 1.4E-07 3E-12 89.1 9.8 140 279-423 9-176 (196)
184 PF05891 Methyltransf_PK: AdoM 98.6 1.7E-07 3.7E-12 88.6 9.8 105 297-420 55-159 (218)
185 KOG3191 Predicted N6-DNA-methy 98.6 4.1E-07 8.8E-12 82.9 10.7 102 297-419 43-165 (209)
186 PF00891 Methyltransf_2: O-met 98.6 3.4E-07 7.4E-12 89.4 11.1 103 287-420 90-197 (241)
187 TIGR00755 ksgA dimethyladenosi 98.6 5.8E-07 1.2E-11 88.6 12.2 84 284-390 16-102 (253)
188 PF05219 DREV: DREV methyltran 98.5 4.3E-07 9.4E-12 87.9 10.0 98 297-425 94-191 (265)
189 COG2265 TrmA SAM-dependent met 98.5 5.3E-07 1.1E-11 94.9 11.5 118 280-419 276-393 (432)
190 COG0421 SpeE Spermidine syntha 98.5 8.9E-07 1.9E-11 88.1 11.5 116 299-428 78-196 (282)
191 TIGR00308 TRM1 tRNA(guanine-26 98.5 9.4E-07 2E-11 91.5 11.8 100 298-421 45-146 (374)
192 COG2520 Predicted methyltransf 98.5 8.1E-07 1.8E-11 90.1 11.1 100 296-419 187-286 (341)
193 COG3897 Predicted methyltransf 98.5 4.7E-07 1E-11 83.5 8.1 110 284-419 66-175 (218)
194 KOG3420 Predicted RNA methylas 98.5 2.8E-07 6.2E-12 80.8 6.3 79 293-390 44-122 (185)
195 COG3963 Phospholipid N-methylt 98.4 2.3E-06 5E-11 77.0 11.4 114 286-419 37-153 (194)
196 PF02527 GidB: rRNA small subu 98.4 2.5E-06 5.4E-11 79.7 12.3 94 300-419 51-145 (184)
197 COG1352 CheR Methylase of chem 98.4 8.5E-07 1.8E-11 87.4 8.9 120 297-422 96-241 (268)
198 PF09445 Methyltransf_15: RNA 98.4 9.5E-07 2.1E-11 80.6 8.6 77 299-390 1-77 (163)
199 PRK10611 chemotaxis methyltran 98.4 8.8E-07 1.9E-11 88.4 9.0 122 298-423 116-263 (287)
200 KOG2940 Predicted methyltransf 98.4 2.1E-07 4.6E-12 87.4 4.2 100 298-420 73-172 (325)
201 PF12147 Methyltransf_20: Puta 98.4 3.6E-06 7.7E-11 82.6 12.7 145 258-419 99-246 (311)
202 PF05958 tRNA_U5-meth_tr: tRNA 98.4 1.9E-06 4.2E-11 88.9 11.1 94 282-391 182-287 (352)
203 PRK00536 speE spermidine synth 98.4 1.8E-06 3.9E-11 84.9 10.2 106 296-427 71-176 (262)
204 KOG2730 Methylase [General fun 98.4 6.5E-07 1.4E-11 83.8 6.5 106 297-419 94-199 (263)
205 KOG0820 Ribosomal RNA adenine 98.4 2.1E-06 4.5E-11 83.0 9.9 88 283-390 44-131 (315)
206 PRK11783 rlmL 23S rRNA m(2)G24 98.4 3.2E-06 6.8E-11 95.0 12.9 123 283-420 175-345 (702)
207 PF03141 Methyltransf_29: Puta 98.4 3.5E-07 7.6E-12 95.6 4.7 118 282-426 98-223 (506)
208 COG0030 KsgA Dimethyladenosine 98.4 2.2E-06 4.7E-11 83.8 9.9 86 284-390 17-103 (259)
209 PRK01544 bifunctional N5-gluta 98.3 2.1E-06 4.5E-11 92.8 10.6 111 297-423 347-463 (506)
210 KOG1663 O-methyltransferase [S 98.3 3.2E-06 7E-11 80.1 10.3 115 294-427 70-188 (237)
211 PF01564 Spermine_synth: Sperm 98.3 1.2E-06 2.7E-11 85.8 7.7 112 297-421 76-190 (246)
212 KOG0822 Protein kinase inhibit 98.3 8.5E-07 1.8E-11 92.4 6.5 177 271-478 334-522 (649)
213 COG0116 Predicted N6-adenine-s 98.3 9E-06 2E-10 83.1 12.9 126 283-425 177-347 (381)
214 PF05148 Methyltransf_8: Hypot 98.3 1.8E-06 3.9E-11 81.0 7.2 88 294-420 69-156 (219)
215 PF08123 DOT1: Histone methyla 98.2 6.6E-06 1.4E-10 78.2 10.3 114 289-419 34-155 (205)
216 PRK00050 16S rRNA m(4)C1402 me 98.2 4.7E-06 1E-10 83.4 9.2 88 286-389 8-97 (296)
217 PF06080 DUF938: Protein of un 98.2 8.2E-06 1.8E-10 76.8 10.1 107 300-420 28-139 (204)
218 KOG2187 tRNA uracil-5-methyltr 98.2 4.8E-06 1E-10 87.2 9.3 124 282-426 368-493 (534)
219 KOG1661 Protein-L-isoaspartate 98.2 3.7E-06 8.1E-11 78.4 6.9 108 295-419 80-190 (237)
220 KOG2915 tRNA(1-methyladenosine 98.1 1.5E-05 3.2E-10 77.2 10.2 110 287-419 95-207 (314)
221 PF04816 DUF633: Family of unk 98.1 2E-05 4.4E-10 74.9 11.2 96 301-419 1-98 (205)
222 COG0144 Sun tRNA and rRNA cyto 98.1 3E-05 6.5E-10 80.1 13.3 121 292-427 151-293 (355)
223 PF07942 N2227: N2227-like pro 98.1 3.2E-05 7E-10 76.2 12.8 113 297-419 56-199 (270)
224 PF01728 FtsJ: FtsJ-like methy 98.1 3.1E-06 6.6E-11 78.9 5.3 107 288-419 11-136 (181)
225 PF02384 N6_Mtase: N-6 DNA Met 98.1 1.5E-05 3.2E-10 80.9 9.8 119 286-419 35-180 (311)
226 KOG3045 Predicted RNA methylas 98.1 6.6E-06 1.4E-10 79.0 6.3 85 296-421 179-263 (325)
227 COG1189 Predicted rRNA methyla 98.0 1.9E-05 4.1E-10 75.4 8.9 107 286-419 68-175 (245)
228 COG0357 GidB Predicted S-adeno 98.0 3.1E-05 6.7E-10 73.8 10.4 96 298-419 68-165 (215)
229 KOG2482 Predicted C2H2-type Zn 98.0 4.5E-06 9.8E-11 82.1 4.1 83 44-131 142-225 (423)
230 PF01269 Fibrillarin: Fibrilla 98.0 7.9E-05 1.7E-09 70.8 12.3 116 284-421 57-177 (229)
231 KOG1269 SAM-dependent methyltr 98.0 1.2E-05 2.6E-10 82.8 6.6 106 294-419 107-212 (364)
232 KOG3201 Uncharacterized conser 98.0 6.5E-06 1.4E-10 73.6 3.9 121 284-420 16-138 (201)
233 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 4.7E-05 1E-09 76.2 9.4 117 294-426 82-223 (283)
234 PF00398 RrnaAD: Ribosomal RNA 97.9 3.4E-05 7.4E-10 76.4 8.1 90 283-390 16-105 (262)
235 PRK11760 putative 23S rRNA C24 97.9 4E-05 8.7E-10 77.4 8.0 88 295-415 209-296 (357)
236 PRK10742 putative methyltransf 97.9 0.00013 2.8E-09 70.8 11.0 97 288-393 77-175 (250)
237 TIGR01444 fkbM_fam methyltrans 97.8 5.5E-05 1.2E-09 67.3 7.4 58 300-371 1-59 (143)
238 COG0500 SmtA SAM-dependent met 97.8 0.0002 4.3E-09 62.0 10.9 103 301-424 52-157 (257)
239 PTZ00357 methyltransferase; Pr 97.8 7.2E-05 1.6E-09 80.4 9.2 156 271-433 641-853 (1072)
240 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 4.7E-05 1E-09 74.6 7.2 121 294-420 53-197 (256)
241 COG4262 Predicted spermidine s 97.8 0.00016 3.4E-09 72.7 10.9 119 297-425 289-410 (508)
242 KOG1709 Guanidinoacetate methy 97.8 0.0002 4.4E-09 67.2 10.5 104 296-419 100-203 (271)
243 TIGR03439 methyl_EasF probable 97.7 0.00051 1.1E-08 69.8 13.8 121 284-420 65-195 (319)
244 PF13578 Methyltransf_24: Meth 97.7 2.7E-05 5.9E-10 65.8 3.1 100 302-421 1-104 (106)
245 PF13679 Methyltransf_32: Meth 97.7 0.00025 5.4E-09 63.4 9.4 79 294-388 22-105 (141)
246 PF05971 Methyltransf_10: Prot 97.7 0.00043 9.3E-09 69.2 11.8 83 298-394 103-189 (299)
247 PF09243 Rsm22: Mitochondrial 97.7 0.00042 9.1E-09 69.1 11.6 59 285-343 21-81 (274)
248 TIGR02987 met_A_Alw26 type II 97.6 0.00022 4.8E-09 77.7 10.2 81 297-391 31-121 (524)
249 KOG1331 Predicted methyltransf 97.6 3E-05 6.4E-10 75.9 2.9 97 296-419 44-140 (293)
250 COG0293 FtsJ 23S rRNA methylas 97.6 0.00022 4.8E-09 67.3 8.3 107 288-419 35-156 (205)
251 PF03059 NAS: Nicotianamine sy 97.6 0.00058 1.3E-08 67.7 10.9 104 297-419 120-227 (276)
252 KOG1122 tRNA and rRNA cytosine 97.4 0.00077 1.7E-08 69.2 10.2 119 293-427 237-376 (460)
253 KOG2798 Putative trehalase [Ca 97.4 0.00051 1.1E-08 68.0 8.1 116 298-419 151-293 (369)
254 KOG2352 Predicted spermine/spe 97.4 0.0013 2.8E-08 69.0 10.9 102 299-419 50-158 (482)
255 COG1889 NOP1 Fibrillarin-like 97.4 0.0014 3.1E-08 61.1 9.8 116 284-421 60-179 (231)
256 COG2384 Predicted SAM-dependen 97.3 0.0022 4.7E-08 60.9 11.0 105 280-413 5-111 (226)
257 KOG3115 Methyltransferase-like 97.3 0.00048 1E-08 64.1 6.3 110 297-419 60-180 (249)
258 TIGR00006 S-adenosyl-methyltra 97.3 0.0015 3.3E-08 65.7 9.8 89 286-389 9-99 (305)
259 PHA01634 hypothetical protein 97.1 0.0011 2.4E-08 57.3 5.9 50 296-345 27-76 (156)
260 KOG3178 Hydroxyindole-O-methyl 97.0 0.0049 1.1E-07 62.3 10.7 94 299-421 179-274 (342)
261 KOG3987 Uncharacterized conser 96.9 0.00025 5.4E-09 66.1 0.5 108 283-421 96-206 (288)
262 KOG0024 Sorbitol dehydrogenase 96.9 0.0018 3.9E-08 64.6 6.5 101 292-419 164-270 (354)
263 PF04672 Methyltransf_19: S-ad 96.9 0.0043 9.2E-08 61.0 8.8 111 299-424 70-192 (267)
264 PF06962 rRNA_methylase: Putat 96.9 0.0061 1.3E-07 54.2 9.0 82 322-419 1-89 (140)
265 PF03141 Methyltransf_29: Puta 96.8 0.0012 2.7E-08 69.5 4.8 117 281-420 349-465 (506)
266 COG4798 Predicted methyltransf 96.8 0.0026 5.5E-08 59.0 6.3 114 289-421 40-165 (238)
267 COG5459 Predicted rRNA methyla 96.8 0.003 6.5E-08 63.5 6.7 131 271-420 87-223 (484)
268 PF04445 SAM_MT: Putative SAM- 96.8 0.0022 4.7E-08 61.9 5.5 96 289-393 65-162 (234)
269 PF01861 DUF43: Protein of unk 96.7 0.021 4.7E-07 55.1 12.1 106 287-417 34-143 (243)
270 PF02005 TRM: N2,N2-dimethylgu 96.7 0.0068 1.5E-07 63.1 9.3 102 297-420 49-152 (377)
271 KOG4589 Cell division protein 96.7 0.0012 2.5E-08 60.9 3.1 100 295-419 67-181 (232)
272 KOG4058 Uncharacterized conser 96.6 0.012 2.6E-07 52.3 8.7 104 291-419 66-169 (199)
273 COG1064 AdhP Zn-dependent alco 96.5 0.013 2.8E-07 59.8 9.0 93 293-419 162-256 (339)
274 PF11968 DUF3321: Putative met 96.4 0.0097 2.1E-07 56.5 7.2 86 299-417 53-139 (219)
275 COG1063 Tdh Threonine dehydrog 96.2 0.03 6.5E-07 57.9 10.3 96 296-419 167-266 (350)
276 KOG2198 tRNA cytosine-5-methyl 96.1 0.039 8.4E-07 56.3 10.3 120 293-426 151-300 (375)
277 KOG1227 Putative methyltransfe 96.1 0.0027 5.9E-08 62.6 2.0 98 297-419 194-293 (351)
278 KOG1562 Spermidine synthase [A 96.1 0.02 4.2E-07 56.7 7.8 120 294-425 118-239 (337)
279 PF07091 FmrO: Ribosomal RNA m 96.1 0.026 5.7E-07 54.8 8.4 85 283-389 93-178 (251)
280 KOG2671 Putative RNA methylase 96.0 0.011 2.4E-07 59.5 5.3 118 287-421 197-353 (421)
281 KOG2793 Putative N2,N2-dimethy 95.8 0.028 6E-07 54.9 7.5 107 297-419 86-196 (248)
282 COG0275 Predicted S-adenosylme 95.8 0.055 1.2E-06 53.9 9.6 90 285-389 11-103 (314)
283 PF04989 CmcI: Cephalosporin h 95.8 0.035 7.7E-07 52.6 7.9 119 280-421 19-146 (206)
284 PRK09424 pntA NAD(P) transhydr 95.8 0.043 9.4E-07 59.2 9.5 43 295-338 162-206 (509)
285 KOG1596 Fibrillarin and relate 95.7 0.029 6.4E-07 53.8 6.9 117 285-423 141-262 (317)
286 KOG2920 Predicted methyltransf 95.7 0.0038 8.1E-08 61.5 0.9 116 295-421 114-233 (282)
287 cd08283 FDH_like_1 Glutathione 95.7 0.045 9.8E-07 57.2 9.1 108 293-419 180-303 (386)
288 COG1867 TRM1 N2,N2-dimethylgua 95.6 0.044 9.5E-07 56.0 8.0 99 298-420 53-152 (380)
289 cd00315 Cyt_C5_DNA_methylase C 95.6 0.024 5.2E-07 56.6 6.1 68 300-390 2-70 (275)
290 KOG1253 tRNA methyltransferase 95.6 0.0095 2.1E-07 62.6 3.3 106 296-421 108-215 (525)
291 PRK09880 L-idonate 5-dehydroge 95.4 0.074 1.6E-06 54.5 9.1 95 295-419 167-263 (343)
292 PF01795 Methyltransf_5: MraW 95.3 0.023 5.1E-07 57.2 5.1 88 287-389 10-100 (310)
293 COG0286 HsdM Type I restrictio 95.0 0.18 3.9E-06 54.5 11.1 121 284-417 173-321 (489)
294 PLN02668 indole-3-acetate carb 94.6 0.2 4.3E-06 52.2 9.5 22 400-421 215-236 (386)
295 PF05711 TylF: Macrocin-O-meth 94.3 0.29 6.4E-06 47.9 9.7 128 279-425 56-215 (248)
296 cd08281 liver_ADH_like1 Zinc-d 94.0 0.22 4.8E-06 51.6 8.8 47 292-338 186-234 (371)
297 cd00401 AdoHcyase S-adenosyl-L 93.9 0.37 8E-06 50.8 10.0 93 287-419 190-286 (413)
298 cd08237 ribitol-5-phosphate_DH 93.8 0.24 5.2E-06 50.7 8.5 90 295-419 161-253 (341)
299 PRK11524 putative methyltransf 93.7 0.21 4.7E-06 50.0 7.6 46 296-342 207-252 (284)
300 PRK13699 putative methylase; P 93.6 0.28 6.1E-06 47.5 8.0 46 296-342 162-207 (227)
301 PF01555 N6_N4_Mtase: DNA meth 93.5 0.14 3E-06 48.7 5.8 42 296-338 190-231 (231)
302 cd08254 hydroxyacyl_CoA_DH 6-h 93.5 0.42 9.2E-06 48.2 9.6 97 292-419 160-260 (338)
303 TIGR03366 HpnZ_proposed putati 93.5 0.21 4.5E-06 49.6 7.2 93 296-419 119-215 (280)
304 TIGR03451 mycoS_dep_FDH mycoth 93.3 0.32 7E-06 50.1 8.4 46 293-338 172-219 (358)
305 PF00145 DNA_methylase: C-5 cy 93.2 0.14 3.1E-06 51.7 5.6 68 300-390 2-69 (335)
306 PF07757 AdoMet_MTase: Predict 93.0 0.079 1.7E-06 44.7 2.6 32 297-329 58-89 (112)
307 PF13912 zf-C2H2_6: C2H2-type 92.8 0.05 1.1E-06 33.8 0.9 26 46-71 1-26 (27)
308 cd08239 THR_DH_like L-threonin 92.7 0.71 1.5E-05 46.9 9.9 99 293-419 159-259 (339)
309 cd08230 glucose_DH Glucose deh 92.6 0.49 1.1E-05 48.6 8.6 92 295-419 170-266 (355)
310 PF03492 Methyltransf_7: SAM d 92.4 1.1 2.4E-05 45.9 10.8 109 294-420 13-181 (334)
311 TIGR00561 pntA NAD(P) transhyd 92.2 0.36 7.8E-06 52.2 7.1 43 295-338 161-205 (511)
312 PF05605 zf-Di19: Drought indu 92.1 0.2 4.4E-06 36.8 3.7 50 46-123 2-51 (54)
313 TIGR00675 dcm DNA-methyltransf 92.1 0.25 5.4E-06 50.3 5.5 67 301-390 1-67 (315)
314 PLN02740 Alcohol dehydrogenase 91.8 1.1 2.4E-05 46.5 10.2 47 292-338 193-241 (381)
315 PF02737 3HCDH_N: 3-hydroxyacy 91.7 1.8 4E-05 40.2 10.5 156 300-486 1-166 (180)
316 PF13821 DUF4187: Domain of un 91.6 0.14 3E-06 38.0 2.2 32 90-129 18-49 (55)
317 PLN02827 Alcohol dehydrogenase 91.5 1 2.2E-05 46.9 9.5 46 293-338 189-236 (378)
318 KOG1099 SAM-dependent methyltr 91.5 0.33 7.1E-06 46.5 5.1 101 294-419 37-160 (294)
319 COG3129 Predicted SAM-dependen 91.4 0.39 8.5E-06 46.1 5.5 83 297-393 78-164 (292)
320 cd05188 MDR Medium chain reduc 91.4 1.4 2.9E-05 42.6 9.7 96 294-419 131-229 (271)
321 TIGR02818 adh_III_F_hyde S-(hy 91.3 1.2 2.5E-05 46.2 9.7 47 292-338 180-228 (368)
322 KOG2078 tRNA modification enzy 91.3 0.16 3.5E-06 52.7 3.1 65 295-372 247-311 (495)
323 PRK10309 galactitol-1-phosphat 91.2 1.3 2.9E-05 45.1 9.9 44 294-337 157-202 (347)
324 TIGR02822 adh_fam_2 zinc-bindi 91.1 1.6 3.5E-05 44.4 10.3 45 293-338 161-207 (329)
325 TIGR00027 mthyl_TIGR00027 meth 91.1 1.2 2.6E-05 44.0 9.0 133 279-425 64-200 (260)
326 PF13894 zf-C2H2_4: C2H2-type 91.0 0.12 2.7E-06 30.5 1.2 23 48-70 2-24 (24)
327 TIGR01202 bchC 2-desacetyl-2-h 90.9 0.58 1.3E-05 47.2 6.8 83 297-419 144-228 (308)
328 COG0686 Ald Alanine dehydrogen 90.9 0.93 2E-05 45.5 7.8 98 296-419 166-265 (371)
329 PF00107 ADH_zinc_N: Zinc-bind 90.8 0.58 1.3E-05 40.3 5.9 81 307-419 1-86 (130)
330 KOG0022 Alcohol dehydrogenase, 90.4 0.59 1.3E-05 46.9 5.9 49 291-339 186-236 (375)
331 cd08232 idonate-5-DH L-idonate 90.3 1.6 3.4E-05 44.3 9.4 90 297-419 165-259 (339)
332 KOG2651 rRNA adenine N-6-methy 90.2 0.99 2.2E-05 46.4 7.5 43 297-340 153-196 (476)
333 PHA00616 hypothetical protein 90.1 0.14 3E-06 36.0 1.0 29 46-74 1-29 (44)
334 cd08285 NADP_ADH NADP(H)-depen 90.0 1.9 4.2E-05 44.0 9.9 99 293-419 162-263 (351)
335 PRK07066 3-hydroxybutyryl-CoA 90.0 2.6 5.7E-05 43.0 10.6 108 299-427 8-124 (321)
336 COG1568 Predicted methyltransf 89.9 0.45 9.7E-06 46.9 4.6 99 293-415 148-250 (354)
337 TIGR02819 fdhA_non_GSH formald 89.3 2.2 4.7E-05 44.8 9.7 104 293-419 181-296 (393)
338 cd08277 liver_alcohol_DH_like 89.1 2.1 4.5E-05 44.2 9.3 47 292-338 179-227 (365)
339 KOG4173 Alpha-SNAP protein [In 89.1 0.18 3.9E-06 47.0 1.1 70 45-129 105-174 (253)
340 PRK11524 putative methyltransf 89.0 0.54 1.2E-05 47.1 4.6 60 360-421 7-79 (284)
341 cd08234 threonine_DH_like L-th 88.5 2 4.4E-05 43.3 8.6 100 291-419 153-254 (334)
342 PF00096 zf-C2H2: Zinc finger, 88.4 0.32 6.9E-06 28.8 1.6 21 103-123 2-22 (23)
343 PF02254 TrkA_N: TrkA-N domain 88.4 2 4.3E-05 36.3 7.2 87 306-419 4-93 (116)
344 KOG3924 Putative protein methy 88.2 1.3 2.9E-05 45.7 6.9 114 289-419 184-305 (419)
345 PLN03154 putative allyl alcoho 88.2 2.2 4.7E-05 43.9 8.7 99 291-419 152-255 (348)
346 TIGR00936 ahcY adenosylhomocys 88.2 3 6.5E-05 44.0 9.7 37 295-332 192-230 (406)
347 cd08301 alcohol_DH_plants Plan 87.9 2.6 5.6E-05 43.5 9.1 46 293-338 183-230 (369)
348 PLN02494 adenosylhomocysteinas 87.9 1.8 4E-05 46.2 7.9 96 285-419 240-338 (477)
349 PF03269 DUF268: Caenorhabditi 87.8 0.39 8.5E-06 43.6 2.5 97 298-420 2-109 (177)
350 cd08265 Zn_ADH3 Alcohol dehydr 87.6 3.8 8.2E-05 42.6 10.2 99 293-419 199-304 (384)
351 cd08255 2-desacetyl-2-hydroxye 87.4 2.6 5.5E-05 41.3 8.4 93 293-419 93-187 (277)
352 PLN02586 probable cinnamyl alc 87.4 2.8 6.1E-05 43.3 9.0 36 295-331 181-218 (360)
353 COG1062 AdhC Zn-dependent alco 87.2 1.5 3.2E-05 44.7 6.4 51 289-339 177-229 (366)
354 PF00096 zf-C2H2: Zinc finger, 87.2 0.24 5.1E-06 29.3 0.5 22 48-70 2-23 (23)
355 cd05278 FDH_like Formaldehyde 87.1 4.3 9.3E-05 41.1 10.1 98 294-419 164-264 (347)
356 PRK05476 S-adenosyl-L-homocyst 87.0 3.7 8E-05 43.6 9.6 84 296-419 210-296 (425)
357 COG0270 Dcm Site-specific DNA 87.0 1.6 3.4E-05 44.7 6.7 73 298-390 3-75 (328)
358 KOG1201 Hydroxysteroid 17-beta 87.0 2.5 5.3E-05 42.3 7.7 78 296-390 36-122 (300)
359 cd08231 MDR_TM0436_like Hypoth 86.9 4.8 0.0001 41.2 10.4 42 296-337 176-219 (361)
360 cd08238 sorbose_phosphate_red 86.8 3.8 8.3E-05 43.1 9.8 47 293-339 171-222 (410)
361 PRK10083 putative oxidoreducta 86.8 3.4 7.3E-05 41.8 9.1 46 293-338 156-204 (339)
362 TIGR03201 dearomat_had 6-hydro 86.2 4.2 9E-05 41.6 9.5 45 293-338 162-208 (349)
363 PRK05786 fabG 3-ketoacyl-(acyl 86.1 6.3 0.00014 37.4 10.1 77 297-390 4-89 (238)
364 PRK01747 mnmC bifunctional tRN 86.0 2.4 5.1E-05 47.8 8.1 55 361-419 148-203 (662)
365 cd08294 leukotriene_B4_DH_like 86.0 4.5 9.9E-05 40.5 9.5 98 291-419 137-238 (329)
366 PF11599 AviRa: RRNA methyltra 86.0 1.8 3.8E-05 41.3 5.8 47 295-341 49-98 (246)
367 cd08278 benzyl_alcohol_DH Benz 85.9 3.6 7.9E-05 42.4 8.9 95 293-419 182-282 (365)
368 KOG0821 Predicted ribosomal RN 85.9 1.8 3.9E-05 41.3 5.8 73 285-372 38-110 (326)
369 cd08293 PTGR2 Prostaglandin re 85.6 4.8 0.0001 40.8 9.5 96 294-419 149-251 (345)
370 PF13894 zf-C2H2_4: C2H2-type 85.1 0.79 1.7E-05 26.8 2.1 21 103-123 2-22 (24)
371 COG4301 Uncharacterized conser 85.1 15 0.00033 35.9 11.7 109 295-422 76-193 (321)
372 PF06859 Bin3: Bicoid-interact 85.1 0.47 1E-05 40.3 1.4 38 382-419 1-41 (110)
373 cd08245 CAD Cinnamyl alcohol d 85.0 7.2 0.00016 39.2 10.4 44 293-337 158-203 (330)
374 PRK11730 fadB multifunctional 84.9 4.5 9.8E-05 46.0 9.6 115 299-431 314-437 (715)
375 TIGR02825 B4_12hDH leukotriene 84.8 6.6 0.00014 39.5 10.0 98 291-419 132-234 (325)
376 TIGR00518 alaDH alanine dehydr 84.7 2.1 4.6E-05 44.6 6.5 39 297-336 166-206 (370)
377 PF10354 DUF2431: Domain of un 84.6 5.5 0.00012 36.6 8.4 106 303-422 2-125 (166)
378 PRK13699 putative methylase; P 84.5 1.4 3.1E-05 42.6 4.8 55 363-420 3-70 (227)
379 PRK10458 DNA cytosine methylas 84.4 4.8 0.0001 43.2 9.1 42 298-339 88-129 (467)
380 PF02636 Methyltransf_28: Puta 84.3 3.6 7.9E-05 40.3 7.6 45 297-341 18-71 (252)
381 cd05285 sorbitol_DH Sorbitol d 84.3 5.6 0.00012 40.4 9.3 99 292-419 157-262 (343)
382 COG2933 Predicted SAM-dependen 84.3 2.5 5.4E-05 41.5 6.1 89 294-415 208-296 (358)
383 cd08233 butanediol_DH_like (2R 84.2 8.1 0.00018 39.4 10.5 99 293-419 168-269 (351)
384 cd08240 6_hydroxyhexanoate_dh_ 84.0 5 0.00011 40.8 8.8 92 296-419 174-271 (350)
385 cd08236 sugar_DH NAD(P)-depend 83.7 3.3 7E-05 42.0 7.3 99 293-419 155-255 (343)
386 PLN02514 cinnamyl-alcohol dehy 83.6 7.8 0.00017 39.8 10.1 39 295-334 178-218 (357)
387 PRK07417 arogenate dehydrogena 83.6 5.4 0.00012 39.7 8.6 88 300-423 2-91 (279)
388 PLN02178 cinnamyl-alcohol dehy 82.9 7.9 0.00017 40.3 9.9 35 296-331 177-213 (375)
389 cd08295 double_bond_reductase_ 82.9 6.2 0.00013 40.0 9.0 99 291-419 145-248 (338)
390 COG4627 Uncharacterized protei 82.7 0.32 6.9E-06 43.9 -0.6 46 377-425 42-89 (185)
391 PRK06701 short chain dehydroge 82.6 5.8 0.00013 39.5 8.5 79 296-390 44-132 (290)
392 cd08261 Zn_ADH7 Alcohol dehydr 82.5 2.5 5.5E-05 42.7 5.9 98 293-419 155-255 (337)
393 PF13909 zf-H2C2_5: C2H2-type 82.2 0.66 1.4E-05 27.8 0.9 23 48-71 2-24 (24)
394 TIGR02437 FadB fatty oxidation 82.2 6.9 0.00015 44.5 9.7 115 299-431 314-437 (714)
395 COG1255 Uncharacterized protei 82.1 5.4 0.00012 34.2 6.5 87 299-420 15-102 (129)
396 PHA00732 hypothetical protein 81.9 1.5 3.3E-05 35.0 3.1 46 46-123 1-46 (79)
397 COG0604 Qor NADPH:quinone redu 81.8 6.5 0.00014 40.2 8.5 99 292-419 137-238 (326)
398 COG3510 CmcI Cephalosporin hyd 81.8 5 0.00011 37.6 6.8 115 282-422 58-180 (237)
399 cd08242 MDR_like Medium chain 81.6 8.8 0.00019 38.4 9.4 92 292-420 150-243 (319)
400 PF07279 DUF1442: Protein of u 81.4 24 0.00053 33.7 11.4 109 286-419 30-145 (218)
401 PRK05808 3-hydroxybutyryl-CoA 81.0 14 0.0003 36.7 10.5 108 300-425 5-121 (282)
402 cd08279 Zn_ADH_class_III Class 80.8 9.8 0.00021 39.0 9.6 97 292-419 177-279 (363)
403 TIGR02440 FadJ fatty oxidation 80.8 8.9 0.00019 43.5 9.9 114 299-430 305-428 (699)
404 cd08296 CAD_like Cinnamyl alco 80.7 8.2 0.00018 39.0 8.9 43 294-337 160-204 (333)
405 PLN02702 L-idonate 5-dehydroge 80.7 7.8 0.00017 39.8 8.8 46 293-338 177-224 (364)
406 KOG2462 C2H2-type Zn-finger pr 80.6 1.9 4E-05 42.4 3.8 78 44-125 159-239 (279)
407 PRK07530 3-hydroxybutyryl-CoA 80.6 15 0.00033 36.6 10.6 110 299-426 5-123 (292)
408 PRK07502 cyclohexadienyl dehyd 80.2 9.2 0.0002 38.5 9.0 88 299-419 7-97 (307)
409 PRK06035 3-hydroxyacyl-CoA deh 80.1 10 0.00022 37.9 9.2 112 299-424 4-123 (291)
410 PF12756 zf-C2H2_2: C2H2 type 80.1 1.1 2.3E-05 36.6 1.8 31 46-76 50-80 (100)
411 KOG0023 Alcohol dehydrogenase, 80.0 5.2 0.00011 40.5 6.8 43 294-337 178-222 (360)
412 cd08286 FDH_like_ADH2 formalde 79.7 13 0.00028 37.6 10.1 99 293-419 162-263 (345)
413 PRK09291 short chain dehydroge 79.5 6.6 0.00014 37.8 7.5 76 298-389 2-80 (257)
414 cd05279 Zn_ADH1 Liver alcohol 79.3 11 0.00023 38.8 9.4 46 292-337 178-225 (365)
415 cd08263 Zn_ADH10 Alcohol dehyd 79.2 14 0.00031 37.9 10.2 96 293-419 183-284 (367)
416 PF05206 TRM13: Methyltransfer 79.1 5.8 0.00013 39.2 6.8 75 285-373 6-86 (259)
417 PRK07819 3-hydroxybutyryl-CoA 79.0 12 0.00026 37.4 9.3 109 299-425 6-124 (286)
418 PF11899 DUF3419: Protein of u 79.0 6 0.00013 41.4 7.2 47 291-338 29-75 (380)
419 PRK08293 3-hydroxybutyryl-CoA 78.9 15 0.00032 36.7 9.9 110 299-425 4-123 (287)
420 PRK07806 short chain dehydroge 78.8 15 0.00032 35.1 9.6 108 296-419 4-131 (248)
421 PRK09260 3-hydroxybutyryl-CoA 78.4 8.3 0.00018 38.5 7.9 110 299-425 2-120 (288)
422 KOG2231 Predicted E3 ubiquitin 78.4 1.2 2.5E-05 49.3 1.8 108 47-155 116-243 (669)
423 PF12874 zf-met: Zinc-finger o 78.3 0.94 2E-05 27.3 0.6 23 103-125 2-24 (25)
424 KOG2352 Predicted spermine/spe 78.1 1.8 4E-05 46.0 3.1 110 297-420 295-414 (482)
425 PRK05867 short chain dehydroge 77.9 9.8 0.00021 36.7 8.1 79 296-390 7-94 (253)
426 TIGR00692 tdh L-threonine 3-de 77.8 11 0.00023 38.2 8.7 97 295-419 159-258 (340)
427 COG5236 Uncharacterized conser 77.7 2 4.3E-05 43.3 3.1 101 53-154 160-281 (493)
428 PRK05708 2-dehydropantoate 2-r 77.7 15 0.00033 37.0 9.6 97 299-419 3-101 (305)
429 PRK08339 short chain dehydroge 77.7 11 0.00024 36.8 8.4 80 296-390 6-93 (263)
430 KOG1994 Predicted RNA binding 77.7 1.3 2.9E-05 42.0 1.7 23 45-67 238-260 (268)
431 PHA00733 hypothetical protein 77.4 4.5 9.7E-05 35.5 4.9 51 46-125 73-123 (128)
432 PRK06172 short chain dehydroge 77.2 11 0.00025 36.1 8.4 79 296-390 5-92 (253)
433 KOG2785 C2H2-type Zn-finger pr 77.1 1.5 3.2E-05 44.9 2.0 32 45-76 216-250 (390)
434 PF02153 PDH: Prephenate dehyd 77.0 11 0.00024 37.0 8.2 75 311-419 1-76 (258)
435 PRK08306 dipicolinate synthase 76.9 21 0.00046 35.9 10.3 38 296-334 150-189 (296)
436 PF12171 zf-C2H2_jaz: Zinc-fin 76.8 0.53 1.2E-05 29.2 -0.8 22 103-124 3-24 (27)
437 COG1250 FadB 3-hydroxyacyl-CoA 76.7 4.4 9.6E-05 41.0 5.3 121 299-431 4-127 (307)
438 PLN02256 arogenate dehydrogena 76.6 17 0.00037 36.8 9.6 34 296-330 34-69 (304)
439 TIGR02441 fa_ox_alpha_mit fatt 76.5 11 0.00024 43.1 9.0 117 299-430 336-458 (737)
440 cd08282 PFDH_like Pseudomonas 76.3 15 0.00033 37.9 9.5 46 293-338 172-219 (375)
441 PRK07035 short chain dehydroge 76.0 13 0.00027 35.8 8.3 79 296-390 6-93 (252)
442 PRK05876 short chain dehydroge 75.9 12 0.00026 36.8 8.3 79 296-390 4-91 (275)
443 PF05443 ROS_MUCR: ROS/MUCR tr 75.9 1.4 3E-05 38.8 1.3 37 45-84 71-107 (132)
444 KOG3608 Zn finger proteins [Ge 75.5 1.4 3.1E-05 44.5 1.4 80 45-124 206-286 (467)
445 PRK08324 short chain dehydroge 75.5 12 0.00026 42.4 8.9 78 296-390 420-506 (681)
446 PRK07890 short chain dehydroge 75.3 15 0.00032 35.3 8.6 79 296-390 3-90 (258)
447 PRK06124 gluconate 5-dehydroge 75.2 14 0.0003 35.5 8.4 79 296-390 9-96 (256)
448 PRK07063 short chain dehydroge 75.1 14 0.00031 35.6 8.5 81 296-390 5-94 (260)
449 PF00106 adh_short: short chai 74.9 13 0.00027 33.1 7.5 77 299-390 1-88 (167)
450 PRK12548 shikimate 5-dehydroge 74.9 19 0.00041 36.1 9.4 45 285-330 113-160 (289)
451 cd08243 quinone_oxidoreductase 74.8 17 0.00038 35.8 9.2 94 293-419 138-235 (320)
452 cd05284 arabinose_DH_like D-ar 74.8 18 0.0004 36.3 9.5 96 295-419 165-263 (340)
453 cd08260 Zn_ADH6 Alcohol dehydr 74.8 17 0.00036 36.8 9.2 97 292-419 160-261 (345)
454 PLN02545 3-hydroxybutyryl-CoA 74.7 22 0.00047 35.6 9.8 109 299-425 5-122 (295)
455 cd08284 FDH_like_2 Glutathione 74.6 17 0.00036 36.7 9.1 97 294-419 164-263 (344)
456 COG0863 DNA modification methy 74.4 12 0.00027 37.1 7.9 57 284-343 211-267 (302)
457 PRK11154 fadJ multifunctional 74.3 19 0.00042 40.9 10.3 114 299-430 310-433 (708)
458 COG1893 ApbA Ketopantoate redu 74.3 13 0.00028 37.7 8.0 94 299-419 1-98 (307)
459 COG0287 TyrA Prephenate dehydr 73.8 15 0.00032 36.8 8.1 89 299-419 4-95 (279)
460 KOG2912 Predicted DNA methylas 73.7 9.9 0.00021 38.4 6.7 94 286-393 89-189 (419)
461 PRK07677 short chain dehydroge 73.5 15 0.00032 35.3 8.1 77 298-390 1-86 (252)
462 PF13912 zf-C2H2_6: C2H2-type 73.5 2.2 4.8E-05 26.2 1.4 20 103-122 3-22 (27)
463 cd08300 alcohol_DH_class_III c 73.5 8.9 0.00019 39.5 6.9 46 293-338 182-229 (368)
464 cd05281 TDH Threonine dehydrog 73.4 9.9 0.00021 38.5 7.1 93 296-419 162-259 (341)
465 PRK07478 short chain dehydroge 73.3 17 0.00037 34.9 8.4 79 296-390 4-91 (254)
466 PRK08862 short chain dehydroge 73.2 15 0.00032 35.2 7.9 79 296-390 3-91 (227)
467 KOG1205 Predicted dehydrogenas 73.2 9.1 0.0002 38.3 6.4 81 296-390 10-99 (282)
468 cd08287 FDH_like_ADH3 formalde 73.1 15 0.00033 37.1 8.4 99 293-419 164-265 (345)
469 PF10237 N6-adenineMlase: Prob 73.0 26 0.00056 32.1 8.9 110 284-423 14-124 (162)
470 PRK06194 hypothetical protein; 72.6 16 0.00034 35.9 8.2 79 296-390 4-91 (287)
471 PRK05396 tdh L-threonine 3-deh 72.6 19 0.00042 36.4 9.0 95 296-419 162-260 (341)
472 PF03446 NAD_binding_2: NAD bi 72.3 23 0.0005 32.0 8.5 85 300-419 3-91 (163)
473 COG1565 Uncharacterized conser 72.0 12 0.00026 38.6 7.0 51 293-343 73-132 (370)
474 PRK06128 oxidoreductase; Provi 71.9 24 0.00051 35.2 9.3 79 296-390 53-142 (300)
475 KOG2893 Zn finger protein [Gen 71.8 2 4.4E-05 41.0 1.4 26 99-124 8-33 (341)
476 cd08298 CAD2 Cinnamyl alcohol 71.6 30 0.00066 34.6 10.1 91 292-420 162-254 (329)
477 cd08256 Zn_ADH2 Alcohol dehydr 71.5 22 0.00047 36.2 9.1 45 293-337 170-216 (350)
478 PRK05854 short chain dehydroge 71.1 19 0.0004 36.3 8.4 81 296-390 12-101 (313)
479 PRK06125 short chain dehydroge 70.7 21 0.00045 34.5 8.4 80 296-390 5-89 (259)
480 PRK07523 gluconate 5-dehydroge 70.6 20 0.00043 34.5 8.2 79 296-390 8-95 (255)
481 COG1748 LYS9 Saccharopine dehy 70.6 12 0.00025 39.3 6.7 73 299-390 2-76 (389)
482 PRK08217 fabG 3-ketoacyl-(acyl 70.3 21 0.00046 33.9 8.3 79 296-390 3-90 (253)
483 PF02086 MethyltransfD12: D12 70.2 6.6 0.00014 38.2 4.7 45 297-342 20-64 (260)
484 cd05283 CAD1 Cinnamyl alcohol 69.9 25 0.00055 35.5 9.2 43 294-337 166-210 (337)
485 TIGR02356 adenyl_thiF thiazole 69.9 22 0.00048 33.5 8.1 33 297-329 20-54 (202)
486 smart00355 ZnF_C2H2 zinc finge 69.8 3.6 7.8E-05 24.1 1.8 23 48-71 2-24 (26)
487 PRK07062 short chain dehydroge 69.8 21 0.00047 34.5 8.3 81 296-390 6-95 (265)
488 PRK08589 short chain dehydroge 69.6 20 0.00044 35.0 8.1 78 296-390 4-90 (272)
489 PF02558 ApbA: Ketopantoate re 69.6 25 0.00053 31.0 8.0 89 301-419 1-98 (151)
490 cd05286 QOR2 Quinone oxidoredu 69.1 43 0.00093 32.7 10.4 45 292-337 131-178 (320)
491 PRK08945 putative oxoacyl-(acy 69.0 21 0.00046 34.1 8.0 47 295-342 9-58 (247)
492 PRK08213 gluconate 5-dehydroge 68.9 23 0.00051 34.1 8.3 79 296-390 10-97 (259)
493 PRK07097 gluconate 5-dehydroge 68.6 23 0.0005 34.4 8.2 79 296-390 8-95 (265)
494 PRK06914 short chain dehydroge 68.6 24 0.00052 34.4 8.4 79 297-389 2-88 (280)
495 PRK05866 short chain dehydroge 68.6 23 0.00049 35.3 8.3 78 297-390 39-125 (293)
496 cd08235 iditol_2_DH_like L-idi 68.5 36 0.00079 34.2 10.0 44 294-337 162-207 (343)
497 PRK08268 3-hydroxy-acyl-CoA de 68.4 44 0.00095 36.4 11.0 111 299-427 8-127 (507)
498 PF05050 Methyltransf_21: Meth 68.4 13 0.00028 33.0 5.9 41 303-343 1-48 (167)
499 PRK07904 short chain dehydroge 68.3 20 0.00042 34.8 7.6 80 296-389 6-94 (253)
500 PRK11064 wecC UDP-N-acetyl-D-m 68.3 15 0.00032 38.9 7.2 36 299-335 4-41 (415)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-41 Score=332.46 Aligned_cols=206 Identities=50% Similarity=0.905 Sum_probs=192.4
Q ss_pred hccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 010913 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 258 ~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~ 337 (497)
.++.||++|++++||++|++|.+|+.+|+.+|+++..++++++|||||||||++|+++|++|+.+|+|||.|.. ++.|+
T Consensus 21 ~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i-a~~a~ 99 (346)
T KOG1499|consen 21 SDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI-ADFAR 99 (346)
T ss_pred hhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH-HHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999985 58999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 338 ~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
+.+..|++. +.|++++|.++++. +|.+++|+|+|+||||+|++++|++++|.++.++|+|||.
T Consensus 100 ~iv~~N~~~-------------~ii~vi~gkvEdi~----LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~ 162 (346)
T KOG1499|consen 100 KIVKDNGLE-------------DVITVIKGKVEDIE----LPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGL 162 (346)
T ss_pred HHHHhcCcc-------------ceEEEeecceEEEe----cCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCce
Confidence 999999983 58999999999984 5689999999999999999999999999999999999999
Q ss_pred EeccCceeEEeeecCCC---CCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHhhh
Q 010913 418 ILPDTATMFVAGFGRGG---TSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSVR 485 (497)
Q Consensus 418 li~~~~~~~~~~~~~~~---~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~~ 485 (497)
++|+.++++++++.+.. ..+.||.++|||+|+++++....+ |.+++++++.++++|+.++.+..
T Consensus 163 i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~~~~~e----~lv~vv~~~~l~t~~~~i~~~Dl 229 (346)
T KOG1499|consen 163 IYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKKIAIKE----PLVDVVDPEQLLTEPCLIKEFDL 229 (346)
T ss_pred EccccceEEEEeccCchhhhhhcCccccccccchhhhhhhhhcc----cceeccChhHhcccceeeEEeee
Confidence 99999999999999874 456699999999999999887554 69999999999999999987653
No 2
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=99.97 E-value=6e-33 Score=267.29 Aligned_cols=151 Identities=30% Similarity=0.638 Sum_probs=134.6
Q ss_pred CCCCCccchhhhccccCC--cccccccccCCcCCCCCCCCCCCCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhh
Q 010913 4 NNKPETEETRKRIEENHE--EEEEEEETEQDWGDWSEDDGGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTEL 81 (497)
Q Consensus 4 ~n~~~~~~~~~~~~~~~~--~~~~~~~~~~~w~dw~~~~~~~~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~ 81 (497)
|||++.||+|...-...+ --++..++|++|+||.+++. +...++||||+....++..+++||+..|.|||.+++..+
T Consensus 236 INY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a-~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~ 314 (423)
T KOG2482|consen 236 INYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDA-EALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDY 314 (423)
T ss_pred EeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCC-CccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhcccc
Confidence 899999999998887763 23344556678999999864 344589999999999999999999999999999999999
Q ss_pred cCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh---ccCcccCCCCCCCCcccccccCccccccccCC
Q 010913 82 RLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA---YNLKETKLRWDKEKYLKPFMQDDKLLYSFGED 156 (497)
Q Consensus 82 ~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~---~~~~~~~~~w~~d~yl~Pv~e~D~lL~~~d~~ 156 (497)
+|+|||+||+|||||+++...+|+.|...|....+++.||.+. +++++ ...||..+|++|++|||.|||.+||.
T Consensus 315 ~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~k~l~i~pd-~~iwD~~e~~fP~~eND~lLC~ldD~ 391 (423)
T KOG2482|consen 315 SLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVEDKHLSILPD-EVIWDPREFFFPYIENDGLLCVLDDS 391 (423)
T ss_pred ccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccccccccccCc-ccccCchhhccceecCCceEEEeccc
Confidence 9999999999999999999999999999999999999999976 45554 67899999999999999999999885
No 3
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.95 E-value=8.5e-28 Score=233.02 Aligned_cols=199 Identities=41% Similarity=0.685 Sum_probs=183.0
Q ss_pred ccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 010913 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 259 ~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~ 338 (497)
...||.-|+.....+.|+.|.+||..|.++|+.|..-+++++|||||||+|++++++|++|+++|+||+.|+ |.+.|++
T Consensus 139 A~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~ 217 (517)
T KOG1500|consen 139 ASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARK 217 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHH
Confidence 457999999888899999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 339 IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 339 ~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
.+..|.+ .++|.+|.|.++++. -++++|+|||++||+.|..+.|+.+.+.+. ++|||.|.+
T Consensus 218 Lv~~N~~-------------~~rItVI~GKiEdie-----LPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkM 278 (517)
T KOG1500|consen 218 LVASNNL-------------ADRITVIPGKIEDIE-----LPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKM 278 (517)
T ss_pred HHhcCCc-------------cceEEEccCcccccc-----CchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcc
Confidence 9999987 479999999999984 368899999999999999999999999887 999999999
Q ss_pred eccCceeEEeeecCCC------CCCCccc--cccCccccccchHHHhhhcCCCeEeeeCCCcccccc
Q 010913 419 LPDTATMFVAGFGRGG------TSLPFWE--NVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDS 477 (497)
Q Consensus 419 i~~~~~~~~~~~~~~~------~~~~fw~--~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~ 477 (497)
+|....+++++|.+.. ..-.||- +.||.++..+.....++.|++|+|+.+++.-++..+
T Consensus 279 fPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~s 345 (517)
T KOG1500|consen 279 FPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKS 345 (517)
T ss_pred cCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccc
Confidence 9999999999998752 4445884 789999999999999999999999999999888654
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.81 E-value=2.8e-19 Score=172.01 Aligned_cols=126 Identities=31% Similarity=0.531 Sum_probs=112.6
Q ss_pred ccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHH
Q 010913 263 FGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAK 341 (497)
Q Consensus 263 f~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~ 341 (497)
+++..+++.|. .|++.+.......+|.+|||||||||.+++.+++. |..+|+|+|+|+.|++.|++++.
T Consensus 27 ~n~~~S~g~~~----------~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~ 96 (238)
T COG2226 27 MNDLMSFGLHR----------LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK 96 (238)
T ss_pred hcccccCcchH----------HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh
Confidence 45566788887 67777877777779999999999999999999998 76799999999999999999998
Q ss_pred hCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 342 DNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 342 ~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+. .++.++++|++++ |+++++||+|. +++.|.+..+.+.+|+++.|+|||||+++
T Consensus 97 ~~~~--------------~~i~fv~~dAe~L----Pf~D~sFD~vt---~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 97 KKGV--------------QNVEFVVGDAENL----PFPDNSFDAVT---ISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred ccCc--------------cceEEEEechhhC----CCCCCccCEEE---eeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 8776 3499999999998 69999999999 67789999999999999999999999876
No 5
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.78 E-value=7.4e-19 Score=166.45 Aligned_cols=143 Identities=29% Similarity=0.369 Sum_probs=120.4
Q ss_pred hhccccccccccch-hHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH
Q 010913 257 KVNESYFGSYSSFG-IHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335 (497)
Q Consensus 257 ~~~~~Yf~~y~~~~-ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~ 335 (497)
.....||+.++.|. .|. -+..|...++..+..+.. .+|.+|||||||-|+++..+|+.|+ .|+|+|+++.+++.
T Consensus 22 ~la~~wwd~~g~f~~LH~---~N~~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~ 96 (243)
T COG2227 22 ALASRWWDPEGEFKPLHK---INPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEV 96 (243)
T ss_pred HHHhhhcCCCCceeeeee---eccchhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHH
Confidence 44578998888876 344 346666666666654444 6899999999999999999999997 99999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 336 ATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 336 A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
|+..+..+|+ .+.+.+..++++. ...++||+|+|.- ++.|.+++..+++++.+++|||
T Consensus 97 Ak~ha~e~gv---------------~i~y~~~~~edl~----~~~~~FDvV~cmE---VlEHv~dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 97 AKLHALESGV---------------NIDYRQATVEDLA----SAGGQFDVVTCME---VLEHVPDPESFLRACAKLVKPG 154 (243)
T ss_pred HHHhhhhccc---------------cccchhhhHHHHH----hcCCCccEEEEhh---HHHccCCHHHHHHHHHHHcCCC
Confidence 9999999987 5889999999985 3458999999865 6788899999999999999999
Q ss_pred cEEeccCceeE
Q 010913 416 GAILPDTATMF 426 (497)
Q Consensus 416 G~li~~~~~~~ 426 (497)
|.+++++.+..
T Consensus 155 G~lf~STinrt 165 (243)
T COG2227 155 GILFLSTINRT 165 (243)
T ss_pred cEEEEeccccC
Confidence 99998887653
No 6
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.76 E-value=8e-19 Score=184.61 Aligned_cols=176 Identities=31% Similarity=0.461 Sum_probs=130.2
Q ss_pred hHHhhhcchhhhHHHHHHHHhCCC----C----CCCCEEEEEcCCCCHhHHHHHHcC-----CCEEEEEeCCHHHHHHHH
Q 010913 271 IHREMISDKVRTDSYRQAILENPS----L----MKGAVVMDIGCGTGILSLFAAQAG-----ASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 271 ih~~ml~d~~r~~~y~~~i~~~~~----~----~~~~~VLDvGCGtG~ls~~la~~G-----~~~V~gvD~S~~~i~~A~ 337 (497)
.++.+-+|.+++..|.++|...+. . .++++|||||||+|.++++++++| +.+|+|||.|+.++..++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 566677999999999999865421 1 136899999999999999998886 579999999998887777
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 338 ~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
+++..+++ .++|+++++|++++. .+.++|+|||++||.++.++ ..+.+|.++.|+|||||+
T Consensus 232 ~~v~~n~w-------------~~~V~vi~~d~r~v~-----lpekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 232 KRVNANGW-------------GDKVTVIHGDMREVE-----LPEKVDIIVSELLGSFGDNE-LSPECLDAADRFLKPDGI 292 (448)
T ss_dssp HHHHHTTT-------------TTTEEEEES-TTTSC-----HSS-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEEEEE
T ss_pred HHHHhcCC-------------CCeEEEEeCcccCCC-----CCCceeEEEEeccCCccccc-cCHHHHHHHHhhcCCCCE
Confidence 77788887 468999999999985 35599999999999888777 556689999999999999
Q ss_pred EeccCceeEEeeecCCCCCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccc
Q 010913 418 ILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDS 477 (497)
Q Consensus 418 li~~~~~~~~~~~~~~~~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~ 477 (497)
++|+.++.+++++..+. .|..+..+ -....+..|.+..+.+...++++
T Consensus 293 ~IP~~~t~ylaPiss~~----l~~~~~~~--------~~~~~~e~pyvv~~~~~~~Ls~~ 340 (448)
T PF05185_consen 293 MIPSSYTSYLAPISSPK----LYQEVRNW--------WNPSSFETPYVVHLSPFELLSDP 340 (448)
T ss_dssp EESSEEEEEEEEEE-HH----HHHHHHHH--------HGHHHHTSSEEE--GGGGBCSCC
T ss_pred EeCcchhhEEEEeeCHH----HHHHHHhh--------cchhhcCCcEEEEccchhhhcCC
Confidence 99999999999987542 23332111 01455677777777777777766
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=5.8e-18 Score=164.11 Aligned_cols=125 Identities=30% Similarity=0.442 Sum_probs=84.7
Q ss_pred cccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHH
Q 010913 264 GSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAK 341 (497)
Q Consensus 264 ~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~ 341 (497)
+...++++|. .|++.+.......+|.+|||+|||||.++..+++. | ..+|+|+|+|+.|++.|++++.
T Consensus 24 n~~ls~g~~~----------~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~ 93 (233)
T PF01209_consen 24 NDLLSFGQDR----------RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK 93 (233)
T ss_dssp -----------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH
T ss_pred ccccCCcHHH----------HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH
Confidence 3344566665 34444444445678899999999999999999886 4 3599999999999999999998
Q ss_pred hCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 342 DNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 342 ~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+. .+|+++++|++++ |+++++||+|+ +++.+.+.+++..+|.++.|+|||||.++
T Consensus 94 ~~~~--------------~~i~~v~~da~~l----p~~d~sfD~v~---~~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 94 REGL--------------QNIEFVQGDAEDL----PFPDNSFDAVT---CSFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp HTT----------------SEEEEE-BTTB------S-TT-EEEEE---EES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred hhCC--------------CCeeEEEcCHHHh----cCCCCceeEEE---HHhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 8876 5899999999998 58999999999 55577777889999999999999999987
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.73 E-value=4.8e-17 Score=164.51 Aligned_cols=154 Identities=22% Similarity=0.282 Sum_probs=119.5
Q ss_pred hhhhHHHhhh---ccccccccccchhHHhhhcchhhhHHHHHHHHhCC-------CCCCCCEEEEEcCCCCHhHHHHHHc
Q 010913 249 KLSAKDIKKV---NESYFGSYSSFGIHREMISDKVRTDSYRQAILENP-------SLMKGAVVMDIGCGTGILSLFAAQA 318 (497)
Q Consensus 249 ~~~~~~~~~~---~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~-------~~~~~~~VLDvGCGtG~ls~~la~~ 318 (497)
++...++.++ .+.||+..++|..+..| +..|...+++.+.... ...++.+|||||||+|.++..+++.
T Consensus 75 s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~--N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~ 152 (322)
T PLN02396 75 SLNEDELAKFSAIADTWWHSEGPFKPLHQM--NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARM 152 (322)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCchHHHHh--ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHc
Confidence 3444555444 35899999998765544 4566666665554322 2346789999999999999999988
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccCh
Q 010913 319 GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE 398 (497)
Q Consensus 319 G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~ 398 (497)
|+ +|+|||+|+.+++.|++++...++ ..++.+++++++++. ++.++||+|++.. ++.|.
T Consensus 153 g~-~V~GID~s~~~i~~Ar~~~~~~~~-------------~~~i~~~~~dae~l~----~~~~~FD~Vi~~~---vLeHv 211 (322)
T PLN02396 153 GA-TVTGVDAVDKNVKIARLHADMDPV-------------TSTIEYLCTTAEKLA----DEGRKFDAVLSLE---VIEHV 211 (322)
T ss_pred CC-EEEEEeCCHHHHHHHHHHHHhcCc-------------ccceeEEecCHHHhh----hccCCCCEEEEhh---HHHhc
Confidence 87 899999999999999988765543 247999999998873 5678999999644 77778
Q ss_pred hhHHHHHHHHhccccCCcEEeccCcee
Q 010913 399 SMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 399 ~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
.++..++.++.++|||||.+++.+.+.
T Consensus 212 ~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 212 ANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 889999999999999999999776543
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.71 E-value=9.4e-17 Score=137.36 Aligned_cols=109 Identities=30% Similarity=0.429 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
|+.+|||||||+|.+++.+++. +..+|+|||+|+.+++.|++++...+. .++|+++++|+ ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~i~~~~~d~-~~~-- 64 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-------------SDRITFVQGDA-EFD-- 64 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-------------TTTEEEEESCC-HGG--
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CCCeEEEECcc-ccC--
Confidence 6789999999999999999993 344899999999999999999966665 37999999999 322
Q ss_pred cCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.-...+||+|++.+ ....+........++..+.+.|+|||++++.+
T Consensus 65 -~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 65 -PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 12356799999876 23334444678899999999999999999654
No 10
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.67 E-value=2.3e-16 Score=150.39 Aligned_cols=146 Identities=24% Similarity=0.256 Sum_probs=113.2
Q ss_pred ccccccccccchhHHhhhcchhhhHHHHHHHHhCCCC-CC------CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHH
Q 010913 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSL-MK------GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEK 331 (497)
Q Consensus 259 ~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~-~~------~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~ 331 (497)
...||+..+.+..-..| +..|....++-++.+... .| |++|||+|||+|.+|..||+.|+ .|+|||+++.
T Consensus 46 a~~wwd~~g~~~~Lh~m--n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~ 122 (282)
T KOG1270|consen 46 AFTWWDEEGVRHPLHSM--NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDD 122 (282)
T ss_pred cccccccccchhhhhhc--cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEeecccHH
Confidence 46788888877644434 566777777887776532 33 47899999999999999999998 9999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhcc
Q 010913 332 MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQW 411 (497)
Q Consensus 332 ~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~ 411 (497)
|++.|++........+ ....-++.+...+++.+. ++||+|+|.. ++.|..++..++..+.+.
T Consensus 123 ~V~vA~~h~~~dP~~~--------~~~~y~l~~~~~~~E~~~-------~~fDaVvcse---vleHV~dp~~~l~~l~~~ 184 (282)
T KOG1270|consen 123 MVEVANEHKKMDPVLE--------GAIAYRLEYEDTDVEGLT-------GKFDAVVCSE---VLEHVKDPQEFLNCLSAL 184 (282)
T ss_pred HHHHHHHhhhcCchhc--------cccceeeehhhcchhhcc-------cccceeeeHH---HHHHHhCHHHHHHHHHHH
Confidence 9999999955443321 000114778888888763 3499999765 788999999999999999
Q ss_pred ccCCcEEeccCcee
Q 010913 412 LKPGGAILPDTATM 425 (497)
Q Consensus 412 LkpgG~li~~~~~~ 425 (497)
|||||.+++.+-+-
T Consensus 185 lkP~G~lfittinr 198 (282)
T KOG1270|consen 185 LKPNGRLFITTINR 198 (282)
T ss_pred hCCCCceEeeehhh
Confidence 99999999776543
No 11
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=99.66 E-value=1.2e-16 Score=158.20 Aligned_cols=112 Identities=23% Similarity=0.358 Sum_probs=85.0
Q ss_pred ccchhhhccccCCcccccccccCCcCCCCCCC--CCCCCCcceecCCCCCCCHHHHHHHhhhhcCcchhh---hhhhhcC
Q 010913 9 TEETRKRIEENHEEEEEEEETEQDWGDWSEDD--GGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHS---VKTELRL 83 (497)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~w~dw~~~~--~~~~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~---~~~~~~l 83 (497)
++-.|.|.....++. .+...+++|+|.+++. +.+..|+.||||++.+++++.++.||...|||-|++ +++..|
T Consensus 128 ~e~~~~E~~~~~d~~-~e~~~dd~~Edi~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~G- 205 (390)
T KOG2785|consen 128 SELKWYEVDSDEDSS-EEEEEDDEEEDIEEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKG- 205 (390)
T ss_pred cccchhhcccccccc-hhhccCcchhhhhhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhH-
Confidence 344566655553222 2222334555544443 234567999999999999999999999999995554 666666
Q ss_pred CccCceehhhhhHhhccccc-ccccC---CccCCHHHHHHHHHHhccCcc
Q 010913 84 DFYGSFKLINYIRSQVAENR-CWICG---LTCQSNQDLQNHLHEAYNLKE 129 (497)
Q Consensus 84 d~Y~~iKliNyiR~~~~~~~-c~~C~---~~~~~~~~~~~Hm~~~~~~~~ 129 (497)
|+-|++.+|..+. |++|+ ..|+|.+++++||.+|+||+.
T Consensus 206 -------Ll~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~HCkl 248 (390)
T KOG2785|consen 206 -------LLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKGHCKL 248 (390)
T ss_pred -------HHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhccCccc
Confidence 8889999998888 99998 689999999999999999996
No 12
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.64 E-value=2.3e-15 Score=142.68 Aligned_cols=118 Identities=24% Similarity=0.343 Sum_probs=103.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC------CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA------SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~------~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
.|.+.....+...++.+|||++||||-+++.+.++ +. ++|+.+|+|+.|++.++++..+.++..
T Consensus 87 lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~--------- 157 (296)
T KOG1540|consen 87 LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA--------- 157 (296)
T ss_pred HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc---------
Confidence 45566667778888999999999999999999887 54 799999999999999999998877632
Q ss_pred CCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..++.++.+|++++ ||++.+||+.+ +++.+.+..+++.+|++++|+|||||++.
T Consensus 158 --~~~~~w~~~dAE~L----pFdd~s~D~yT---iafGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 158 --SSRVEWVEGDAEDL----PFDDDSFDAYT---IAFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred --CCceEEEeCCcccC----CCCCCcceeEE---EecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 24599999999998 69999999999 77788999999999999999999999986
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.63 E-value=4.4e-15 Score=146.78 Aligned_cols=117 Identities=20% Similarity=0.297 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNA 359 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~--~gl~~~~~~~~~~~~~~ 359 (497)
.+++.+.....+.++.+|||+|||||.++..+++. |. .+|+|+|+|+.|++.|+++... .+. .
T Consensus 60 ~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~-------------~ 126 (261)
T PLN02233 60 IWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC-------------Y 126 (261)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc-------------C
Confidence 35555555556678899999999999999999876 43 5899999999999999877531 111 2
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++++++++++++ |+++++||+|++. +++++..++..++.++.|+|||||.+++
T Consensus 127 ~~i~~~~~d~~~l----p~~~~sfD~V~~~---~~l~~~~d~~~~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 127 KNIEWIEGDATDL----PFDDCYFDAITMG---YGLRNVVDRLKAMQEMYRVLKPGSRVSI 180 (261)
T ss_pred CCeEEEEcccccC----CCCCCCEeEEEEe---cccccCCCHHHHHHHHHHHcCcCcEEEE
Confidence 4799999999887 5888999999954 4666777899999999999999999874
No 14
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.62 E-value=5.8e-15 Score=148.81 Aligned_cols=183 Identities=16% Similarity=0.095 Sum_probs=117.8
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+|.+-....++......+|++|||||||+|.++..++..|+..|+|||+|+.|+..++...+..+.
T Consensus 103 e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~------------- 169 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN------------- 169 (314)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------------
Confidence 4444444556666666788999999999999999999988888899999999998765443322111
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEee--ecCCCCC
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAG--FGRGGTS 436 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~--~~~~~~~ 436 (497)
..++.+..++++++. . ..+||+|+|.. ++.|..++..+|.+++++|||||.|++.+..+.... ...+...
T Consensus 170 ~~~v~~~~~~ie~lp----~-~~~FD~V~s~g---vL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~r 241 (314)
T TIGR00452 170 DKRAILEPLGIEQLH----E-LYAFDTVFSMG---VLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDR 241 (314)
T ss_pred CCCeEEEECCHHHCC----C-CCCcCEEEEcc---hhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHH
Confidence 147888999998873 2 35899999865 556667888999999999999999996543221000 0000000
Q ss_pred CCcccccc-CccccccchHHHhhhcCCCeEeeeCCCcccccchhhhHhh
Q 010913 437 LPFWENVY-GFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSV 484 (497)
Q Consensus 437 ~~fw~~v~-g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~ 484 (497)
..-..+++ ......+...+...+|. .+.+++.....++......++
T Consensus 242 y~k~~nv~flpS~~~L~~~L~~aGF~--~V~i~~~~~tt~~eqr~t~w~ 288 (314)
T TIGR00452 242 YAKMKNVYFIPSVSALKNWLEKVGFE--NFRILDVLKTTPEEQRKTDWI 288 (314)
T ss_pred HHhccccccCCCHHHHHHHHHHCCCe--EEEEEeccCCCHHHhhhhhhh
Confidence 00011222 23455667777666665 455555444433333333333
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=3.4e-15 Score=122.98 Aligned_cols=95 Identities=32% Similarity=0.429 Sum_probs=78.6
Q ss_pred EEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCC
Q 010913 302 MDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381 (497)
Q Consensus 302 LDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~ 381 (497)
||+|||+|..+..+++.+..+|+|+|+|+.+++.++++.... ++.++.++++++ |++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----------------~~~~~~~d~~~l----~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----------------GVSFRQGDAEDL----PFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----------------TEEEEESBTTSS----SS-TT
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----------------CchheeehHHhC----ccccc
Confidence 899999999999999995559999999999999999986543 456999999987 58999
Q ss_pred ceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 382 ~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+||+|++.. ++.+..++..++.++.|+|||||.+++
T Consensus 60 sfD~v~~~~---~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 60 SFDVVFSNS---VLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -EEEEEEES---HGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccc---ceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 999999765 444448899999999999999999873
No 16
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=1e-14 Score=148.30 Aligned_cols=123 Identities=24% Similarity=0.281 Sum_probs=96.3
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
..|.....+.+.......+|++|||||||+|.++..+++.|+..|+|+|+|+.++..++...+..+.
T Consensus 104 ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~------------- 170 (322)
T PRK15068 104 EWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN------------- 170 (322)
T ss_pred eehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-------------
Confidence 3444444455565666568899999999999999999999888899999999998765544332221
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
..++.++.++++++. + .++||+|+|.. ++.|..++..+|..+++.|+|||.+++++
T Consensus 171 ~~~i~~~~~d~e~lp----~-~~~FD~V~s~~---vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 171 DQRAHLLPLGIEQLP----A-LKAFDTVFSMG---VLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CCCeEEEeCCHHHCC----C-cCCcCEEEECC---hhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 247999999999873 5 78899999865 45566788899999999999999999753
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=8.7e-15 Score=132.72 Aligned_cols=108 Identities=29% Similarity=0.459 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHH-c-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQ-A-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~-~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||+|||+|.++..+++ . +..+|+|||+|+.|++.|+++++.+++ ++++++++|+.++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~--------------~ni~~~~~d~~~l~ 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL--------------DNIEFIQGDIEDLP 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS--------------TTEEEEESBTTCGC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc--------------cccceEEeehhccc
Confidence 4678999999999999999994 4 345999999999999999999999987 58999999999964
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.. ++ ++||+|++.. .+.+..++..++..+.++|+|||.+++...
T Consensus 68 ~~--~~-~~~D~I~~~~---~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 68 QE--LE-EKFDIIISNG---VLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp GC--SS-TTEEEEEEES---TGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--cC-CCeeEEEEcC---chhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 11 33 8999999765 445667888999999999999999984443
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=1e-14 Score=143.79 Aligned_cols=106 Identities=25% Similarity=0.309 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++++...|+ .++++++++++.++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-------------~~~v~~~~~d~~~l~-- 106 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-------------SDNMQFIHCAAQDIA-- 106 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-------------ccceEEEEcCHHHHh--
Confidence 4578999999999999999999986 999999999999999999988876 357999999998874
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.++||+|++.. ++.+..++..++..+.++|||||.+++.
T Consensus 107 -~~~~~~fD~V~~~~---vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 107 -QHLETPVDLILFHA---VLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred -hhcCCCCCEEEehh---HHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 34578999999654 5556677889999999999999999753
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.59 E-value=1.5e-14 Score=137.17 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=88.8
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.....++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++...++ .+++++.+|+.+
T Consensus 25 ~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~--------------~~v~~~~~d~~~ 89 (197)
T PRK11207 25 AVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL--------------DNLHTAVVDLNN 89 (197)
T ss_pred hcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC--------------CcceEEecChhh
Confidence 33455778999999999999999999987 999999999999999999888876 468889999877
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. + +++||+|++..+.++ .....+..++..+.++|||||.++
T Consensus 90 ~~----~-~~~fD~I~~~~~~~~-~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 90 LT----F-DGEYDFILSTVVLMF-LEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred CC----c-CCCcCEEEEecchhh-CCHHHHHHHHHHHHHHcCCCcEEE
Confidence 63 3 467999998764332 344578899999999999999965
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=99.58 E-value=1.6e-14 Score=148.16 Aligned_cols=117 Identities=21% Similarity=0.195 Sum_probs=97.6
Q ss_pred HHHHHHhCCCC-----CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 285 YRQAILENPSL-----MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 285 y~~~i~~~~~~-----~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
+.+.++....+ .++.+|||||||+|.++..+++. |+ +|+|||+|+.+++.|+++++.+++
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~------------- 166 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGL------------- 166 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCC-------------
Confidence 33445555555 67899999999999999999987 55 999999999999999999888876
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++++++.+|+.++ +++.++||+|++.. .+.|..+...++.++.++|||||.+++..
T Consensus 167 ~~~v~~~~~D~~~~----~~~~~~FD~V~s~~---~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 167 SDKVSFQVADALNQ----PFEDGQFDLVWSME---SGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCceEEEEcCcccC----CCCCCCccEEEECC---chhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 35799999999886 47889999999754 45566778899999999999999998643
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.58 E-value=2e-14 Score=139.28 Aligned_cols=116 Identities=28% Similarity=0.419 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.+++.++....+.++.+|||+|||+|.++..+++. | ..+|+|+|+|+.+++.|++++...++ ++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--------------~~ 97 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL--------------HN 97 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC--------------Cc
Confidence 55666777777788999999999999999999876 3 35999999999999999999877765 57
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++.+|+.++ +++.++||+|++.. .+.+.+++..++.++.++|+|||.+++
T Consensus 98 v~~~~~d~~~~----~~~~~~fD~V~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 98 VELVHGNAMEL----PFDDNSFDYVTIGF---GLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred eEEEEechhcC----CCCCCCccEEEEec---ccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 99999999876 36778999999643 556667788999999999999999974
No 22
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.58 E-value=1.9e-14 Score=134.44 Aligned_cols=110 Identities=25% Similarity=0.383 Sum_probs=88.0
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
++......++.++||+|||.|+.+++||+.|. .|+|+|.|+..++.+++.+...++ .|+....|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l---------------~i~~~~~D 85 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL---------------DIRTRVAD 85 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT----------------TEEEEE-B
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc---------------eeEEEEec
Confidence 33334556788999999999999999999999 899999999999999999988887 59999999
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.+.. + ++.||+|+|..+..+ +.....+.++..+...++|||++++
T Consensus 86 l~~~~----~-~~~yD~I~st~v~~f-L~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 86 LNDFD----F-PEEYDFIVSTVVFMF-LQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp GCCBS------TTTEEEEEEESSGGG-S-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred chhcc----c-cCCcCEEEEEEEecc-CCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 98874 4 478999998755544 4566788999999999999999874
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.57 E-value=1.3e-14 Score=137.19 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=85.4
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.....++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++..+++ ++.+..+++..
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~---------------~v~~~~~d~~~ 88 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL---------------PLRTDAYDINA 88 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC---------------CceeEeccchh
Confidence 33445678999999999999999999987 899999999999999998887776 36777777765
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. + +++||+|++..+.+. .+..+...++..+.++|||||.++
T Consensus 89 ~~----~-~~~fD~I~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 89 AA----L-NEDYDFIFSTVVFMF-LQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred cc----c-cCCCCEEEEeccccc-CCHHHHHHHHHHHHHHhCCCcEEE
Confidence 42 3 357999998764332 234577889999999999999865
No 24
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.55 E-value=3.9e-14 Score=140.45 Aligned_cols=120 Identities=28% Similarity=0.349 Sum_probs=92.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
...+.+...+.+.+|.+|||||||.|.+++.+|+. |+ +|+||.+|+...+.|++.++..|+ .+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl-------------~~~v 114 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGL-------------EDRV 114 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS-------------SSTE
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCC-------------CCce
Confidence 45567788889999999999999999999999999 88 999999999999999999999998 3689
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
++..+|..++. .+||.|+|..|...+ .......++..+.++|||||.+++...+.
T Consensus 115 ~v~~~D~~~~~-------~~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 115 EVRLQDYRDLP-------GKFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp EEEES-GGG----------S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred EEEEeeccccC-------CCCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 99999988763 289999997754433 23678899999999999999998654443
No 25
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.54 E-value=6.3e-14 Score=131.37 Aligned_cols=101 Identities=31% Similarity=0.398 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.++.+|||+|||+|.+++.+++. +..+|+|+|+|+.|++.|+++++.+++ ++++++++++.++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l--------------~~i~~~~~d~~~~~ 108 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL--------------KNVTVVHGRAEEFG 108 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC--------------CCEEEEeccHhhCC
Confidence 345899999999999999998875 456999999999999999999999887 45999999998864
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
. .++||+|++..+ ..+..++..+.++|||||.+++.
T Consensus 109 ----~-~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 109 ----Q-EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ----C-CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 3 678999997641 35678999999999999999843
No 26
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=5.4e-14 Score=137.93 Aligned_cols=115 Identities=29% Similarity=0.349 Sum_probs=100.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
...+.++..+.+.+|.+|||||||.|.+++.+|+. |+ +|+||++|+.+.+.++++++..|+ .++|
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl-------------~~~v 124 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGL-------------EDNV 124 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCC-------------Cccc
Confidence 45677888899999999999999999999999999 67 999999999999999999999998 3589
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+++..|..++. ++||-|||..|...+.. ...+.++..+.++|+|||.++.
T Consensus 125 ~v~l~d~rd~~-------e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 125 EVRLQDYRDFE-------EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred EEEeccccccc-------cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEE
Confidence 99999988863 34999999876555433 4578899999999999999983
No 27
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=7.4e-14 Score=137.20 Aligned_cols=111 Identities=27% Similarity=0.350 Sum_probs=89.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.++..+...++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++. ..+.+
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~-------------------~~~~~ 89 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD-------------------AADHY 89 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC-------------------CCCCE
Confidence 344455555445678999999999999999988876 9999999999999888763 13467
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+|++.+ +++.++||+|+|.. .+.+..++..+|.++.++|+|||.+++.+
T Consensus 90 ~~~d~~~~----~~~~~~fD~V~s~~---~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 90 LAGDIESL----PLATATFDLAWSNL---AVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred EEcCcccC----cCCCCcEEEEEECc---hhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 88999886 47788999999865 45556788999999999999999998553
No 28
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.51 E-value=8.1e-14 Score=138.60 Aligned_cols=107 Identities=30% Similarity=0.453 Sum_probs=90.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+.++.+|||+|||+|..++.+++. |. .+|+|+|+|+.+++.|+++....++ .+++++.+++++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--------------~~v~~~~~d~~~ 139 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--------------TNVEFRLGEIEA 139 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--------------CCEEEEEcchhh
Confidence 4578999999999999988877776 54 4899999999999999999888776 578999999988
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ +++.++||+|+++. ++.+..+...++.++.++|||||.+++.
T Consensus 140 l----~~~~~~fD~Vi~~~---v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 140 L----PVADNSVDVIISNC---VINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred C----CCCCCceeEEEEcC---cccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 6 46778999999875 3444567788999999999999999854
No 29
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.51 E-value=1e-13 Score=137.15 Aligned_cols=112 Identities=26% Similarity=0.360 Sum_probs=91.3
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+.++....+.++.+|||||||+|..+..+++. |+ +|+|+|+|+.+++.|+++.... .++.+
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~----------------~~i~~ 103 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDK----------------NKIEF 103 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcC----------------CceEE
Confidence 344556677889999999999999999999876 55 9999999999999999875431 47999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|+.+. ++++++||+|++.. +++|. .++..++.++.++|||||.+++.
T Consensus 104 ~~~D~~~~----~~~~~~FD~V~s~~---~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 104 EANDILKK----DFPENTFDMIYSRD---AILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EECCcccC----CCCCCCeEEEEEhh---hHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99998865 47788999999754 33333 37889999999999999999854
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=8e-14 Score=137.37 Aligned_cols=105 Identities=25% Similarity=0.348 Sum_probs=86.4
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
.++......++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|++. ++.++.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------------------~~~~~~ 78 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------------------GVDART 78 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------------------CCcEEE
Confidence 4556666678899999999999999999987 234899999999999988652 467889
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+|++++ .+.++||+|+|.. ++++..++..++.++.++|||||.+++.
T Consensus 79 ~d~~~~-----~~~~~fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 79 GDVRDW-----KPKPDTDVVVSNA---ALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred cChhhC-----CCCCCceEEEEeh---hhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 999876 2457899999765 5556667889999999999999999864
No 31
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.51 E-value=1.4e-13 Score=128.62 Aligned_cols=98 Identities=28% Similarity=0.406 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++.+|||+|||+|.+++.++..+ ..+|+|+|.|+.|++.|+++++.+++ ++++++++++.++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~--------------~~i~~i~~d~~~~~-- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL--------------NNVEIVNGRAEDFQ-- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC--------------CCeEEEecchhhcc--
Confidence 48899999999999999988773 45899999999999999999988876 46999999998862
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..++||+|+|.. + ..+..++..+.++|+|||.+++
T Consensus 106 ---~~~~fD~I~s~~----~---~~~~~~~~~~~~~LkpgG~lvi 140 (181)
T TIGR00138 106 ---HEEQFDVITSRA----L---ASLNVLLELTLNLLKVGGYFLA 140 (181)
T ss_pred ---ccCCccEEEehh----h---hCHHHHHHHHHHhcCCCCEEEE
Confidence 357899999764 2 2455678888999999999983
No 32
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.51 E-value=1.3e-13 Score=135.34 Aligned_cols=173 Identities=21% Similarity=0.154 Sum_probs=119.4
Q ss_pred hcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 010913 276 ISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGN 355 (497)
Q Consensus 276 l~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~ 355 (497)
+..++|.+...+.+........|++|||||||.|..+..++++|++.|+|+|.+........-..+-.|.
T Consensus 94 IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~---------- 163 (315)
T PF08003_consen 94 IDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ---------- 163 (315)
T ss_pred ecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC----------
Confidence 3556666666677777776789999999999999999999999999999999999877664443333332
Q ss_pred CCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEe---eecC
Q 010913 356 INNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVA---GFGR 432 (497)
Q Consensus 356 ~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~---~~~~ 432 (497)
...+.++...++++. . .++||+|+|.. +|.|..++-..|..++..|+|||.|++.+..+-.. .+ -
T Consensus 164 ---~~~~~~lplgvE~Lp----~-~~~FDtVF~MG---VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L-~ 231 (315)
T PF08003_consen 164 ---DPPVFELPLGVEDLP----N-LGAFDTVFSMG---VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVL-V 231 (315)
T ss_pred ---CccEEEcCcchhhcc----c-cCCcCEEEEee---ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEE-c
Confidence 124455545677763 3 67899999966 55566788899999999999999999766533111 01 1
Q ss_pred CCCCCCccccccC-ccccccchHHHhhhcCCCeEeeeCCCc
Q 010913 433 GGTSLPFWENVYG-FTMSCVGREVVQDAAGIPIVDVVDDHD 472 (497)
Q Consensus 433 ~~~~~~fw~~v~g-~~~~~~~~~~~~~~~~~p~v~~v~~~~ 472 (497)
+..+.+--+++|= -...++..++...+|. .|.+++...
T Consensus 232 P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~--~v~~v~~~~ 270 (315)
T PF08003_consen 232 PEDRYAKMRNVWFIPSVAALKNWLERAGFK--DVRCVDVSP 270 (315)
T ss_pred cCCcccCCCceEEeCCHHHHHHHHHHcCCc--eEEEecCcc
Confidence 1222222344442 2566777777777765 455555443
No 33
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.50 E-value=3.3e-13 Score=117.03 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=90.0
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
+..++....+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++++.+++ .++++
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~ 73 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV--------------SNIVI 73 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC--------------CceEE
Confidence 344555556667889999999999999999987 446999999999999999999988776 47889
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+++.... +....+||+|++.. .. .....++..+.++|||||.+++..
T Consensus 74 ~~~~~~~~~---~~~~~~~D~v~~~~---~~---~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 74 VEGDAPEAL---EDSLPEPDRVFIGG---SG---GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EeccccccC---hhhcCCCCEEEECC---cc---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 988876531 12346899999753 21 345689999999999999998653
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=1.8e-13 Score=134.92 Aligned_cols=111 Identities=20% Similarity=0.304 Sum_probs=90.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
....++....+.++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++. .++.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------------------~~~~ 79 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------------------PDCQ 79 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------------------CCCe
Confidence 3445566666778899999999999999999987 4459999999999999998763 3678
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++.+|+..+ .+..+||+|++.. ++.+..+...++..+.++|||||.+++..
T Consensus 80 ~~~~d~~~~-----~~~~~fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 80 FVEADIASW-----QPPQALDLIFANA---SLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEECchhcc-----CCCCCccEEEEcc---ChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 999999875 2456899999765 45555678899999999999999998653
No 35
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.49 E-value=1.7e-13 Score=126.75 Aligned_cols=104 Identities=31% Similarity=0.456 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~-~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++.+|||+|||+|.+++.+++.+.. +|+++|+++.+++.|++++..|++ .+++++.+|+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~--------------~~v~~~~~d~~~~--- 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL--------------ENVEVVQSDLFEA--- 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC--------------TTEEEEESSTTTT---
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc--------------ccccccccccccc---
Confidence 6789999999999999999998654 799999999999999999999998 3399999998764
Q ss_pred cCCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~LkpgG~li 419 (497)
++..+||+|+|+++.+.-.. ......++....++|||||.++
T Consensus 94 --~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 94 --LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp --CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 45789999999975322211 1246788999999999999986
No 36
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.48 E-value=1.1e-13 Score=128.11 Aligned_cols=130 Identities=24% Similarity=0.289 Sum_probs=93.1
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
|+..+...++..+-.++||+|||.|.++..||.+ +.+++++|+|+.+++.|+++.... ++|++
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~----------------~~V~~ 93 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL----------------PHVEW 93 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-----------------SSEEE
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC----------------CCeEE
Confidence 3344433333345578999999999999999998 459999999999999999987542 58999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCCCCcccccc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVY 444 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw~~v~ 444 (497)
+++++... .|.++||+||..-++|+|....++..++..+...|+|||.|++.+... .....|.+..
T Consensus 94 ~~~dvp~~-----~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd---------~~c~~wgh~~ 159 (201)
T PF05401_consen 94 IQADVPEF-----WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD---------ANCRRWGHAA 159 (201)
T ss_dssp EES-TTT--------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H---------HHHHHTT-S-
T ss_pred EECcCCCC-----CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC---------CcccccCccc
Confidence 99999876 478999999988889988777889999999999999999999644311 1223577776
Q ss_pred C
Q 010913 445 G 445 (497)
Q Consensus 445 g 445 (497)
|
T Consensus 160 g 160 (201)
T PF05401_consen 160 G 160 (201)
T ss_dssp -
T ss_pred c
Confidence 6
No 37
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.48 E-value=1.2e-13 Score=116.40 Aligned_cols=97 Identities=29% Similarity=0.426 Sum_probs=78.7
Q ss_pred EEEEcCCCCHhHHHHHHcC---C-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 301 VMDIGCGTGILSLFAAQAG---A-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 301 VLDvGCGtG~ls~~la~~G---~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
|||+|||+|..+..+++.. . .+++|+|+|+.|++.|++.....+. +++++++|+.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---------------~~~~~~~D~~~l~--- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---------------KVRFVQADARDLP--- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---------------TSEEEESCTTCHH---
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---------------ceEEEECCHhHCc---
Confidence 7999999999999999873 2 5999999999999999999877654 7899999998874
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG 416 (497)
...++||+|++.......+....+..+++.+.++|||||
T Consensus 63 -~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 -FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 567799999984332233667788999999999999998
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=3e-13 Score=135.64 Aligned_cols=102 Identities=23% Similarity=0.350 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|..+..+++.|. +|+|+|+|+.+++.+++++..+++ ++.+..+|+....
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l---------------~v~~~~~D~~~~~-- 180 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL---------------NIRTGLYDINSAS-- 180 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC---------------ceEEEEechhccc--
Confidence 4556999999999999999999987 999999999999999999988775 6888888887653
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+ +++||+|++..+.+++ .......++..+.++|+|||+++
T Consensus 181 --~-~~~fD~I~~~~vl~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 181 --I-QEEYDFILSTVVLMFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred --c-cCCccEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 3 6789999987643332 34577889999999999999965
No 39
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.47 E-value=3.4e-13 Score=137.12 Aligned_cols=115 Identities=25% Similarity=0.261 Sum_probs=91.2
Q ss_pred hHHHHHHHHhCCCC-CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSL-MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 282 ~~~y~~~i~~~~~~-~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
++..++.++....+ .++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++...
T Consensus 97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----------------- 159 (340)
T PLN02490 97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----------------- 159 (340)
T ss_pred hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----------------
Confidence 34455555554444 36789999999999999988876 446999999999999999887532
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+++++.+|++++ +++.++||+|++.. .+.+..+...+|.++.++|||||.+++
T Consensus 160 ~~i~~i~gD~e~l----p~~~~sFDvVIs~~---~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 160 KECKIIEGDAEDL----PFPTDYADRYVSAG---SIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred cCCeEEeccHHhC----CCCCCceeEEEEcC---hhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 3678899999886 47788999999754 455556778899999999999999874
No 40
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.47 E-value=1.4e-13 Score=137.35 Aligned_cols=110 Identities=27% Similarity=0.438 Sum_probs=83.3
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
|..-.+.|... ..+|++|||+|||||++++.+++.|+++|+|+|+++.+++.|++++..|++. .+
T Consensus 148 T~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-------------~~ 212 (295)
T PF06325_consen 148 TRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-------------DR 212 (295)
T ss_dssp HHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-------------TC
T ss_pred HHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-------------ee
Confidence 33344444443 4678999999999999999999999999999999999999999999999983 45
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.+. ...+ ....+||+|+++.+.. -+..++..+.++|+|||.+++
T Consensus 213 ~~v~--~~~~------~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 213 IEVS--LSED------LVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp EEES--CTSC------TCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEE
T ss_pred EEEE--Eecc------cccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEE
Confidence 5442 1122 3458999999986433 345677888999999999983
No 41
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.4e-13 Score=136.18 Aligned_cols=102 Identities=28% Similarity=0.447 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||+|||+|++++.+++.|+++|+|+|+++.+++.|+++++.|++. ..++.-..+....
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-------------~~~~~~~~~~~~~--- 224 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-------------LLVQAKGFLLLEV--- 224 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-------------hhhhcccccchhh---
Confidence 489999999999999999999999999999999999999999999999872 1222222222222
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
....+||+||++-+.. -+..+...+.+.|||||+++++
T Consensus 225 --~~~~~~DvIVANILA~------vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 225 --PENGPFDVIVANILAE------VLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred --cccCcccEEEehhhHH------HHHHHHHHHHHHcCCCceEEEE
Confidence 2346999999885432 3457788899999999999843
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.46 E-value=8e-13 Score=128.33 Aligned_cols=139 Identities=29% Similarity=0.367 Sum_probs=107.2
Q ss_pred hhhccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH
Q 010913 256 KKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335 (497)
Q Consensus 256 ~~~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~ 335 (497)
......||+.++.++.+..+.. .| .+.+.......++.+|||||||+|.++..+++.|+ +|+++|+++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~--~~----~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~ 85 (233)
T PRK05134 13 SALAARWWDPNGEFKPLHRINP--LR----LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV 85 (233)
T ss_pred HHHHHHHhccCCCcHHHHHhhH--HH----HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHH
Confidence 3456779999988877665443 22 23444444456789999999999999999999876 89999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 336 ATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 336 A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
|++++...++ .+.++.+++..+. ....++||+|++.. .+.+..++..+|..+.++|+||
T Consensus 86 a~~~~~~~~~---------------~~~~~~~~~~~~~---~~~~~~fD~Ii~~~---~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 86 ARLHALESGL---------------KIDYRQTTAEELA---AEHPGQFDVVTCME---MLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred HHHHHHHcCC---------------ceEEEecCHHHhh---hhcCCCccEEEEhh---HhhccCCHHHHHHHHHHHcCCC
Confidence 9988876654 5788888887753 12457899999654 5566677888999999999999
Q ss_pred cEEeccC
Q 010913 416 GAILPDT 422 (497)
Q Consensus 416 G~li~~~ 422 (497)
|.+++..
T Consensus 145 G~l~v~~ 151 (233)
T PRK05134 145 GLVFFST 151 (233)
T ss_pred cEEEEEe
Confidence 9998653
No 43
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.45 E-value=1.2e-12 Score=126.14 Aligned_cols=142 Identities=31% Similarity=0.392 Sum_probs=113.4
Q ss_pred hccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHH
Q 010913 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 258 ~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~ 337 (497)
....||+.+..+..+..| +..|...+++.+..+....++.+|||+|||+|.++..+++.+. +|+|+|+++.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~ 84 (224)
T TIGR01983 8 LAHEWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAK 84 (224)
T ss_pred HHHHhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence 345688888888877765 6677777777776653335688999999999999999998876 7999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 338 ~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
+++..+++ .++.+..+++.++. ...+++||+|++.. .+.+..++..++..+.++|+|||.
T Consensus 85 ~~~~~~~~--------------~~~~~~~~d~~~~~---~~~~~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 85 LHAKKDPL--------------LKIEYRCTSVEDLA---EKGAKSFDVVTCME---VLEHVPDPQAFIRACAQLLKPGGI 144 (224)
T ss_pred HHHHHcCC--------------CceEEEeCCHHHhh---cCCCCCccEEEehh---HHHhCCCHHHHHHHHHHhcCCCcE
Confidence 98877654 26889999988763 11247899999654 556667888999999999999999
Q ss_pred EeccC
Q 010913 418 ILPDT 422 (497)
Q Consensus 418 li~~~ 422 (497)
+++..
T Consensus 145 l~i~~ 149 (224)
T TIGR01983 145 LFFST 149 (224)
T ss_pred EEEEe
Confidence 88654
No 44
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.45 E-value=5.6e-13 Score=130.78 Aligned_cols=107 Identities=22% Similarity=0.354 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|++++...++ ..+++++.+++.++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-------------~~~v~~~~~d~~~~ 121 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-------------PTPVDVIEGDIRDI 121 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-------------CCCeEEEeCChhhC
Confidence 57789999999999999888872 334999999999999999999987765 24799999999875
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
. + ..+|+|++....+++ .......++.++.+.|||||.+++..
T Consensus 122 ~----~--~~~D~vv~~~~l~~l-~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 122 A----I--ENASMVVLNFTLQFL-EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred C----C--CCCCEEehhhHHHhC-CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 3 358999976433332 33456789999999999999998543
No 45
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=1.2e-12 Score=134.99 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=93.0
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.-.++++..++...+.+|||+|||+|.+++.+++. +..+|+++|.|+.+++.|+++++.|+... ..++
T Consensus 215 ~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~-----------~~~v 283 (378)
T PRK15001 215 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA-----------LDRC 283 (378)
T ss_pred hHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc-----------CceE
Confidence 33455666665555679999999999999999987 34599999999999999999998886410 1368
Q ss_pred EEEecchhhcccccCCCCCceeEEEecccccccc--ChhhHHHHHHHHhccccCCcEEecc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL--YESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~--~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.+|+... ++..+||+|+|++..+... .......++..+.++|+|||.+++.
T Consensus 284 ~~~~~D~l~~-----~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 284 EFMINNALSG-----VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEcccccc-----CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9998887553 3456899999997543321 2234567899999999999998843
No 46
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.44 E-value=6.9e-13 Score=114.30 Aligned_cols=109 Identities=28% Similarity=0.386 Sum_probs=87.2
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
|.+|||+|||+|.+++.+++.+..+++|+|+++..++.|+.++..+++ .++++++++|+.++.. .
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-------------~~~~~~~~~D~~~~~~--~ 65 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-------------DDRVEVIVGDARDLPE--P 65 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-------------TTTEEEEESHHHHHHH--T
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-------------CceEEEEECchhhchh--h
Confidence 578999999999999999999856999999999999999999999887 3589999999988742 3
Q ss_pred CCCCceeEEEeccccccccC-----hhhHHHHHHHHhccccCCcEEecc
Q 010913 378 IQPHSVDVLVSEWMGYCLLY-----ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~-----~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++..+||+|++++....... ......++..+.++|||||.+++-
T Consensus 66 ~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 66 LPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp CTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 56789999999864322111 123467899999999999998843
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.44 E-value=8.5e-13 Score=141.62 Aligned_cols=111 Identities=24% Similarity=0.369 Sum_probs=91.4
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
++....+.++.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|+++.... ..++.++.+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~---------------~~~v~~~~~ 321 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGR---------------KCSVEFEVA 321 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcC---------------CCceEEEEc
Confidence 444445667899999999999999999987 55 8999999999999998876432 247999999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
|+... +++.++||+|+|.. .+.|..++..++.++.++|||||.+++..
T Consensus 322 d~~~~----~~~~~~fD~I~s~~---~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 322 DCTKK----TYPDNSFDVIYSRD---TILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CcccC----CCCCCCEEEEEECC---cccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 98876 46778999999865 55666788999999999999999998553
No 48
>PRK08317 hypothetical protein; Provisional
Probab=99.42 E-value=1.8e-12 Score=125.34 Aligned_cols=119 Identities=27% Similarity=0.354 Sum_probs=97.6
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
..|++.++....+.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++.... ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---------------~~ 69 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---------------GP 69 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---------------CC
Confidence 4567777788888899999999999999999998872 459999999999999998873222 24
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
++.++.+++..+ +++.++||+|++.. ++.+..++..++..+.++|||||.+++..+
T Consensus 70 ~~~~~~~d~~~~----~~~~~~~D~v~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 70 NVEFVRGDADGL----PFPDGSFDAVRSDR---VLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ceEEEecccccC----CCCCCCceEEEEec---hhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 789999998876 36678999999654 566667889999999999999999986543
No 49
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.42 E-value=1.3e-12 Score=121.88 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++..+++ +++++.+|+.+.
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---------------~~~~~~~d~~~~-- 78 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV---------------GLDVVMTDLFKG-- 78 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC---------------ceEEEEcccccc--
Confidence 45678999999999999999999887 999999999999999999987765 588899987664
Q ss_pred ccCCCCCceeEEEeccccccccC------------------hhhHHHHHHHHhccccCCcEEec
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLY------------------ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~------------------~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..++||+|++++..+.... ......++.++.++|||||.+++
T Consensus 79 ----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 79 ----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred ----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 2458999999864321111 11246789999999999999874
No 50
>PRK06922 hypothetical protein; Provisional
Probab=99.41 E-value=1.7e-12 Score=139.85 Aligned_cols=111 Identities=22% Similarity=0.375 Sum_probs=87.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
...++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++....+ .++.++++|+.++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---------------~~ie~I~gDa~dL 479 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---------------RSWNVIKGDAINL 479 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---------------CCeEEEEcchHhC
Confidence 3457899999999999999888875 44599999999999999998865544 3688899998876
Q ss_pred ccccCCCCCceeEEEecccccccc----------ChhhHHHHHHHHhccccCCcEEecc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLL----------YESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~----------~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.. .+++++||+|+++++.+.+. ....+..+|.++.++|||||.+++.
T Consensus 480 p~--~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 480 SS--SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred cc--ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 31 25678999999875333221 1346789999999999999999853
No 51
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.41 E-value=1.3e-12 Score=124.25 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-hhccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-EELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-~~l~~ 374 (497)
++.+|||+|||+|.++..+++. +..+|+|||+|+.+++.|++++..+++ .++.++++|+ ..+..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~--------------~~v~~~~~d~~~~l~~ 105 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL--------------TNLRLLCGDAVEVLLD 105 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC--------------CCEEEEecCHHHHHHH
Confidence 5689999999999999999887 445899999999999999999988776 5799999999 66531
Q ss_pred ccCCCCCceeEEEecccccccc--Ch---hhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLL--YE---SMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~--~~---~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.+++++||+|++........ +. .....++.++.++|||||.+++.+
T Consensus 106 --~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 106 --MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred --HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 15678899999753211000 10 024678999999999999998544
No 52
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.40 E-value=2.7e-12 Score=121.71 Aligned_cols=117 Identities=26% Similarity=0.364 Sum_probs=92.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.+..++....+.++.+|||+|||+|.+++.+++. | ..+|+++|+++.+++.|+++++.+++. .++
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-------------~~v 94 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-------------NNI 94 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------CCe
Confidence 3444456667889999999999999999999875 3 359999999999999999999988852 578
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.++.+|+.+.. +....+||+|++.. ....+..++..+.+.|||||.++++..
T Consensus 95 ~~~~~d~~~~l---~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 95 VLIKGEAPEIL---FTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred EEEEechhhhH---hhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 99999987642 22246899999642 224567899999999999999985443
No 53
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.40 E-value=2e-12 Score=129.76 Aligned_cols=100 Identities=26% Similarity=0.444 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|++++.+++.|+.+|+|+|+++.+++.|++++..+++. .++.++.++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-------------~~~~~~~~~~~~---- 220 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-------------DRLQVKLIYLEQ---- 220 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-------------cceEEEeccccc----
Confidence 467999999999999999999998889999999999999999999988872 456777665322
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
...++||+|+++.+. ..+..++..+.++|||||.+++
T Consensus 221 --~~~~~fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 221 --PIEGKADVIVANILA------EVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred --ccCCCceEEEEecCH------HHHHHHHHHHHHHcCCCcEEEE
Confidence 346789999987531 3456788999999999999984
No 54
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.40 E-value=7e-14 Score=117.17 Aligned_cols=98 Identities=29% Similarity=0.318 Sum_probs=63.4
Q ss_pred EEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCC
Q 010913 302 MDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQP 380 (497)
Q Consensus 302 LDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~ 380 (497)
||||||+|.++..++.. +..+++|+|+|+.|++.|++++...+. .+...+.....+... ....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--------------DNFERLRFDVLDLFD--YDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----------------EEEEE--SSS-----CCC-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--------------cceeEEEeecCChhh--cccc
Confidence 79999999999999888 445999999999999889988877653 344444444444321 1223
Q ss_pred CceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 381 HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 381 ~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
++||+|++.. +++|.+++..++..+.++|||||+|
T Consensus 65 ~~fD~V~~~~---vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASN---VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE----TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhh---hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 6999999654 6666688999999999999999986
No 55
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.40 E-value=7.9e-13 Score=119.98 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++.+|||||||+|.++..+++.|. +|+|+|+++.+++. . .+.....+....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~------------------~~~~~~~~~~~~-- 72 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R------------------NVVFDNFDAQDP-- 72 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T------------------TSEEEEEECHTH--
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h------------------hhhhhhhhhhhh--
Confidence 57889999999999999999999998 99999999999876 1 122222222232
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+.+.++||+|+|.. ++.|..++..+|..+.++|||||.+++....
T Consensus 73 --~~~~~~fD~i~~~~---~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 73 --PFPDGSFDLIICND---VLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --HCHSSSEEEEEEES---SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --hccccchhhHhhHH---HHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 24678999999765 6667778999999999999999999965543
No 56
>PRK14967 putative methyltransferase; Provisional
Probab=99.40 E-value=3e-12 Score=123.69 Aligned_cols=107 Identities=30% Similarity=0.347 Sum_probs=86.1
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+.++.+|||+|||+|.++..+++.|+.+|+|+|+|+.+++.|++++..+++ ++.++.+|+.+.
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---------------~~~~~~~d~~~~ 96 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---------------DVDVRRGDWARA 96 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---------------eeEEEECchhhh
Confidence 34567889999999999999999998777999999999999999999988765 578899988764
Q ss_pred ccccCCCCCceeEEEeccccccccC-------------------hhhHHHHHHHHhccccCCcEEec
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLY-------------------ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~-------------------~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++..+||+|++++. |.... ...+..++..+.++|||||++++
T Consensus 97 -----~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 97 -----VEFRPFDVVVSNPP-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred -----ccCCCeeEEEECCC-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 45678999999852 22111 11246688889999999999984
No 57
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.40 E-value=4e-12 Score=119.34 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=88.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
..+..++..+.+.++.+|||+|||+|.+++.+++.+ ..+|+|+|+|+.+++.|++++..+++ .++
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~--------------~~i 83 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC--------------GNI 83 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--------------CCe
Confidence 344455566666788999999999999999999873 45999999999999999999988876 468
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+++.+++... + ..+||+|++.. .. ..+..++..+.++|+|||.+++
T Consensus 84 ~~~~~d~~~~-----~-~~~~D~v~~~~---~~---~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 84 DIIPGEAPIE-----L-PGKADAIFIGG---SG---GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred EEEecCchhh-----c-CcCCCEEEECC---Cc---cCHHHHHHHHHHhcCCCeEEEE
Confidence 9999887432 2 35799999653 22 2356788889999999999985
No 58
>PRK05785 hypothetical protein; Provisional
Probab=99.40 E-value=1.3e-12 Score=126.48 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.+|||||||||.++..+++.+..+|+|+|+|+.|++.|++. ..+++++++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----------------------~~~~~~d~~~l---- 104 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----------------------DDKVVGSFEAL---- 104 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----------------------cceEEechhhC----
Confidence 4789999999999999999988323999999999999988753 13467888876
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG 416 (497)
|+++++||+|++.. .+.+..++..++.++.|+|||.+
T Consensus 105 p~~d~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 58899999999654 66677889999999999999954
No 59
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.39 E-value=1.5e-12 Score=119.91 Aligned_cols=102 Identities=27% Similarity=0.334 Sum_probs=86.6
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE-EEecchhhcccccC
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME-VVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~-~i~gd~~~l~~~l~ 377 (497)
..||+||||||..-.+.--.+..+|+++|+++.|-++|.+.++++.. .++. |+.++.+++. .
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~--------------~~~~~fvva~ge~l~---~ 140 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP--------------LQVERFVVADGENLP---Q 140 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC--------------cceEEEEeechhcCc---c
Confidence 46899999999987777644445999999999999999999988753 4566 9999999985 4
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++++|+||+.. +|-...++...|.++.|+|||||++++
T Consensus 141 l~d~s~DtVV~Tl---vLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 141 LADGSYDTVVCTL---VLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred cccCCeeeEEEEE---EEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 7899999999765 666678899999999999999999984
No 60
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.39 E-value=1.9e-12 Score=124.87 Aligned_cols=114 Identities=23% Similarity=0.335 Sum_probs=93.6
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
......++|||+|||+|.+++++|++ ...+|+|||+.+.+++.|+++++.|++ ..+|+++++|+.+
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-------------~~ri~v~~~Di~~ 106 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-------------EERIQVIEADIKE 106 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-------------hhceeEehhhHHH
Confidence 34445899999999999999999998 646999999999999999999999988 4799999999999
Q ss_pred cccccCCCCCceeEEEeccccccccC---------------hhhHHHHHHHHhccccCCcEEecc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLY---------------ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~---------------~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+... ....+||+|+|++..|-... ..++..++....++|||||.+.+-
T Consensus 107 ~~~~--~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 107 FLKA--LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred hhhc--ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 8642 33457999999985443211 124688999999999999998843
No 61
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.39 E-value=3.3e-12 Score=124.62 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|++++...+. ..+++++++|+.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-------------~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-------------EIPVEILCNDIRHV 118 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-------------CCCeEEEECChhhC
Confidence 47789999999999999999885 235899999999999999999876543 24789999999886
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
. + ..+|+|++....+. ....+...++.++.++|||||.+++..
T Consensus 119 ~----~--~~~d~v~~~~~l~~-~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 119 E----I--KNASMVILNFTLQF-LPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred C----C--CCCCEEeeecchhh-CCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 3 3 35899886542222 233457889999999999999998553
No 62
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=4.8e-12 Score=120.68 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=86.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.....+++.+.+.++.+|||||||+|..+..+++. + ..+|+|+|+++.+++.|++++..+++. .+
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-------------~~ 125 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-------------GV 125 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------Cc
Confidence 34455566666778899999999999999998876 3 358999999999999999999888762 46
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++.+|+.+.. ....+||+|++... +. .+..++.+.|+|||+|++
T Consensus 126 v~~~~~d~~~~~----~~~~~fD~Ii~~~~---~~------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 126 VEVYHGDGKRGL----EKHAPFDAIIVTAA---AS------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred EEEEECCcccCC----ccCCCccEEEEccC---cc------hhhHHHHHhcCcCcEEEE
Confidence 899999987642 23568999997642 21 122456789999999974
No 63
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.38 E-value=2.2e-12 Score=124.46 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 299 AVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
++|||||||+|.++..+++. +..+|+|+|+|+.++..|++++...|+ .++++++.+|+... +
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-------------~~~i~~~~~d~~~~----~ 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-------------QGRIRIFYRDSAKD----P 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-------------CcceEEEecccccC----C
Confidence 47999999999999999887 345899999999999999999988887 36899999998654 2
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+ +++||+|++.. ++.+..+...++..+.++|||||.+++..
T Consensus 64 ~-~~~fD~I~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 F-PDTYDLVFGFE---VIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred C-CCCCCEeehHH---HHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 45899999755 34445677899999999999999998543
No 64
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=4.5e-12 Score=122.85 Aligned_cols=117 Identities=29% Similarity=0.430 Sum_probs=94.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.++..++......++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.|++++..+++ ..+
T Consensus 38 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-------------~~~ 104 (239)
T PRK00216 38 VWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-------------SGN 104 (239)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-------------ccC
Confidence 344445555555678999999999999999999885 36999999999999999998866544 257
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++.+++.++. ++.++||+|++. +++.+..++..++..+.++|+|||.+++
T Consensus 105 ~~~~~~d~~~~~----~~~~~~D~I~~~---~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 105 VEFVQGDAEALP----FPDNSFDAVTIA---FGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred eEEEecccccCC----CCCCCccEEEEe---cccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 899999998763 556789999954 4666677889999999999999999874
No 65
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=4.8e-12 Score=121.34 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=86.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.....++....+.++.+|||||||+|.++..+++. |. .+|+++|+++.+++.|+++++..++ .+
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--------------~~ 128 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--------------DN 128 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CC
Confidence 34455666667789999999999999999998887 43 5999999999999999999988876 57
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++.+|+.... .+..+||+|++.. ... .+...+.+.|||||+++.
T Consensus 129 v~~~~gd~~~~~----~~~~~fD~I~~~~---~~~------~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 129 VEVIVGDGTLGY----EENAPYDRIYVTA---AGP------DIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred eEEEECCcccCC----CcCCCcCEEEECC---Ccc------cchHHHHHhhCCCcEEEE
Confidence 999999987642 3457899999653 221 123455678999999884
No 66
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.36 E-value=4.8e-12 Score=121.56 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=85.6
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...++..+.+.++.+|||||||+|.++..+++... .+|+|+|+++.+++.|++++..+++ ++++
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~--------------~~v~ 131 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL--------------DNVI 131 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC--------------CCeE
Confidence 34455556678899999999999999999998732 4699999999999999999999887 5799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+|+.+.. ....+||+|++.. .. ..+...+.+.|+|||+++..
T Consensus 132 ~~~~d~~~~~----~~~~~fD~Ii~~~---~~------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 132 VIVGDGTQGW----EPLAPYDRIYVTA---AG------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EEECCcccCC----cccCCCCEEEEcC---Cc------ccccHHHHHhcCcCcEEEEE
Confidence 9999987642 2346899999653 21 12334567889999998843
No 67
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=4.7e-12 Score=122.55 Aligned_cols=102 Identities=32% Similarity=0.420 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.++..+++... +++.++.+|+.+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------------------~~~~~~~~d~~~~-- 92 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------------------ENVQFICGDAEKL-- 92 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------------------CCCeEEecchhhC--
Confidence 456899999999999999999885 3579999999999988887642 3678999999886
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+++.++||+|++.. ++.+..++..++..+.++|+|||.+++..
T Consensus 93 --~~~~~~fD~vi~~~---~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 93 --PLEDSSFDLIVSNL---ALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --CCCCCceeEEEEhh---hhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 36778999999765 55666788899999999999999998543
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.34 E-value=6e-12 Score=118.98 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=85.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+.+|||||||+|.++..+|+. +...|+|||+++.+++.|++++...++ +++.++++|+.++...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l--------------~ni~~i~~d~~~~~~~ 81 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL--------------KNLHVLCGDANELLDK 81 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC--------------CCEEEEccCHHHHHHh
Confidence 4569999999999999999987 445999999999999999999988877 5899999999875311
Q ss_pred cCCCCCceeEEEeccccccc--cCh---hhHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCL--LYE---SMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l--~~~---~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.++.+++|.|+++...... .|. -....++..+.++|||||.|++.+.
T Consensus 82 -~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 82 -FFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred -hCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 1345689999965321100 000 0125789999999999999985543
No 69
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.34 E-value=2e-11 Score=126.96 Aligned_cols=112 Identities=27% Similarity=0.300 Sum_probs=88.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
..+.+.....+.+|.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|++++. ++ .++
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l---------------~v~ 216 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL---------------PVE 216 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC---------------eEE
Confidence 3445566677789999999999999999999987 66 99999999999999998863 32 478
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+..+|..++ .++||+|+|..+...+ ....+..++..+.++|||||.+++..
T Consensus 217 ~~~~D~~~l-------~~~fD~Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 217 IRLQDYRDL-------NGQFDRIVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEECchhhc-------CCCCCEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 888887653 3689999987643322 23456789999999999999998643
No 70
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.34 E-value=1.2e-11 Score=118.64 Aligned_cols=114 Identities=26% Similarity=0.404 Sum_probs=92.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.++..++......++.+|||+|||+|.++..+++.+. .+++|+|+++.++..++++.. . ..+
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-------------~~~ 89 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-------------PLN 89 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-------------CCC
Confidence 4455555555556889999999999999999998854 489999999999999888764 1 247
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++.+++.+.. ++.++||+|++.. .+.+..++..++..+.++|+|||.+++
T Consensus 90 i~~~~~d~~~~~----~~~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 90 IEFIQADAEALP----FEDNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred ceEEecchhcCC----CCCCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 899999998763 5667899999643 566677889999999999999999984
No 71
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.33 E-value=1.6e-11 Score=112.85 Aligned_cols=118 Identities=29% Similarity=0.366 Sum_probs=97.8
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
+..|...+..+.+.+|.+++|||||||.+++.++.. +..+|+|+|.++.+++..++++++.|+ ++
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--------------~n 85 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV--------------DN 85 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC--------------Cc
Confidence 345666777888899999999999999999999976 446999999999999999999999997 79
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+.++.|++.+.. + ...++|.|+ ++-. ..++.+|..+...|||||+|+.+..++
T Consensus 86 ~~vv~g~Ap~~L---~-~~~~~daiF---IGGg----~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 86 LEVVEGDAPEAL---P-DLPSPDAIF---IGGG----GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred EEEEeccchHhh---c-CCCCCCEEE---ECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 999999998863 2 122799999 4323 467889999999999999999655443
No 72
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.33 E-value=1.1e-11 Score=126.77 Aligned_cols=117 Identities=26% Similarity=0.290 Sum_probs=94.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....+.......+|.+|||+|||||.+++.++..|+ +|+|+|+++.|+..|+.+++..|+ .++.+
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~--------------~~i~~ 234 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGI--------------EDFFV 234 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCC--------------CCCeE
Confidence 444555555677899999999999999999888877 899999999999999999998887 34889
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccc----c---ChhhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCL----L---YESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l----~---~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|+.++ +++.++||+|+++++ |.. . .......++..+.++|||||.+++.
T Consensus 235 ~~~D~~~l----~~~~~~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 235 KRGDATKL----PLSSESVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred EecchhcC----CcccCCCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 99999886 356789999999853 221 1 1133578999999999999998743
No 73
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.33 E-value=1.8e-11 Score=122.41 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++++..+++ .+++.++.+|+.+.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-------------~~~i~~~~~D~~~~-- 184 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-------------EDRVTLIQSDLFAA-- 184 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEECchhhc--
Confidence 34579999999999999999987 334999999999999999999999887 25799999998653
Q ss_pred ccCCCCCceeEEEecccccc----------ccCh------------hhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYC----------LLYE------------SMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~----------l~~~------------~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++..+||+|++++.-.- +.++ .....++..+.++|+|||.+++..
T Consensus 185 ---~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 185 ---LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred ---cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 44568999999853110 1111 123567888999999999998544
No 74
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.33 E-value=8.9e-12 Score=122.51 Aligned_cols=95 Identities=32% Similarity=0.505 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|++++.+++.|+.+|+|+|+|+.+++.|++++..+++. .++.+..+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-------------~~~~~~~~-------- 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-------------LNVYLPQG-------- 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-------------ceEEEccC--------
Confidence 578999999999999999999888878999999999999999999888761 23433322
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
..+||+|+++... ..+..++..+.++|||||.++++
T Consensus 177 ----~~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 177 ----DLKADVIVANILA------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred ----CCCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 1269999986421 23567888999999999999853
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=126.35 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=87.9
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
-.+.++.........+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.|+++++.+++ ...
T Consensus 184 gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l---------------~~~ 248 (342)
T PRK09489 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL---------------EGE 248 (342)
T ss_pred HHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCE
Confidence 33445554444445689999999999999999883 35899999999999999999999886 346
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCCcEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.+|+... ..++||+|+|+++.+.... ......++..+.++|||||.+++
T Consensus 249 ~~~~D~~~~------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 249 VFASNVFSD------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred EEEcccccc------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 677776542 2578999999875432211 24567899999999999999974
No 76
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.32 E-value=1.7e-11 Score=117.91 Aligned_cols=115 Identities=30% Similarity=0.311 Sum_probs=88.2
Q ss_pred HHHHHHhCCC--CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPS--LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~--~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
+++.++..+. ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.|+..|++++...+. ..++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-------------~~~i 106 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-------------AGNV 106 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-------------CCce
Confidence 3344443333 46789999999999999999998876 999999999999999999877664 2479
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++++++..+ + ++||+|++....+++ ....+..++.++.+++++++++.+.
T Consensus 107 ~~~~~d~~~~------~-~~fD~ii~~~~l~~~-~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 107 EFEVNDLLSL------C-GEFDIVVCMDVLIHY-PASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EEEECChhhC------C-CCcCEEEEhhHHHhC-CHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999998775 2 789999975432222 2356788899999999987776643
No 77
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.32 E-value=9.6e-12 Score=133.49 Aligned_cols=116 Identities=23% Similarity=0.338 Sum_probs=89.3
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
..++......++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.+++.. +. .+++.+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~---~~-------------~~~i~~~~ 89 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESIN---GH-------------YKNVKFMC 89 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHh---cc-------------CCceEEEE
Confidence 3455555556778999999999999999999854 9999999999998776532 21 14789999
Q ss_pred cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+|+.... ++++.++||+|++.++.+.+ ....+..++.++.++|||||++++..
T Consensus 90 ~d~~~~~--~~~~~~~fD~I~~~~~l~~l-~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 90 ADVTSPD--LNISDGSVDLIFSNWLLMYL-SDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ecccccc--cCCCCCCEEEEehhhhHHhC-CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9986432 25677899999988744433 23457889999999999999998643
No 78
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.32 E-value=4.3e-12 Score=117.87 Aligned_cols=114 Identities=22% Similarity=0.285 Sum_probs=92.6
Q ss_pred hhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 281 r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
|+.-.++ ++....+.+..+|.|+|||+|..+..++++ +...|+|+|-|+.|++.|+++.
T Consensus 15 RtRPa~d-Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------------------- 74 (257)
T COG4106 15 RTRPARD-LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------------------- 74 (257)
T ss_pred ccCcHHH-HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------------------
Confidence 3444444 444556678899999999999999999998 6569999999999999997764
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.+++|..+|+.++. +...+|+|+++. ++...++-..+|..+...|.|||.|....
T Consensus 75 p~~~f~~aDl~~w~-----p~~~~dllfaNA---vlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 75 PDATFEEADLRTWK-----PEQPTDLLFANA---VLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred CCCceecccHhhcC-----CCCccchhhhhh---hhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 57899999999984 678999999987 44444566778888999999999998543
No 79
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.32 E-value=2e-11 Score=115.49 Aligned_cols=116 Identities=26% Similarity=0.346 Sum_probs=88.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
..+..++..+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++..+++ .++
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~--------------~~v 92 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV--------------KNV 92 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CCe
Confidence 34445666667778899999999999999999876 345999999999999999999988876 479
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+++.+|+.+.- +.....+|.|+... ...+..++..+.++|+|||.++....
T Consensus 93 ~~~~~d~~~~~---~~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 93 EVIEGSAPECL---AQLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEECchHHHH---hhCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 99999986531 11123456665321 13457889999999999999985544
No 80
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=99.31 E-value=6.9e-13 Score=111.03 Aligned_cols=95 Identities=34% Similarity=0.636 Sum_probs=25.1
Q ss_pred ceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhccc-ccccccCCccCCHHHHHHHHHHhcc
Q 010913 48 LCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE-NRCWICGLTCQSNQDLQNHLHEAYN 126 (497)
Q Consensus 48 ~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~-~~c~~C~~~~~~~~~~~~Hm~~~~~ 126 (497)
.|+||+..|+++..++.||+..|+|++.... .+....++++|++.++.. ..|..|+..|.+..+|+.||..+.|
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H 75 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQK-----YLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHH 75 (100)
T ss_dssp -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTT
T ss_pred Ccccccccccccccccccccccccccccccc-----ccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCccC
Confidence 5999999999999999999999999988422 223677899999999987 6699999999999999999999987
Q ss_pred Cccc---CCCCCCCCcccccccCc
Q 010913 127 LKET---KLRWDKEKYLKPFMQDD 147 (497)
Q Consensus 127 ~~~~---~~~w~~d~yl~Pv~e~D 147 (497)
.... ...|++-+++.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~y~~~~~~ 99 (100)
T PF12756_consen 76 KKRNSESEESWEEFEKFYDFWSND 99 (100)
T ss_dssp TC-S--------------------
T ss_pred CCcccccccccccccccccccccC
Confidence 7742 34588999999998876
No 81
>PRK04266 fibrillarin; Provisional
Probab=99.31 E-value=2.3e-11 Score=117.55 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=81.1
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
...+.+|.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.++++.. .++.++.+|+.
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----------------~nv~~i~~D~~ 130 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----------------KNIIPILADAR 130 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----------------CCcEEEECCCC
Confidence 467789999999999999999999987 4458999999999999887776432 36888999986
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
......++ ..+||+|++.. ........++..+.++|||||.+++.
T Consensus 131 ~~~~~~~l-~~~~D~i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 131 KPERYAHV-VEKVDVIYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred Ccchhhhc-cccCCEEEECC-----CChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 53111122 35699999653 11122345689999999999999854
No 82
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.30 E-value=2.1e-11 Score=116.82 Aligned_cols=116 Identities=25% Similarity=0.176 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC-CCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE-GNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~-~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++.+|||+|||.|..+..+|++|. .|+|||+|+.+++.|.+ ++++.....+.. .......+|+++++|+.++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~- 107 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT- 107 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC-
Confidence 4678999999999999999999999 89999999999987533 333321110000 00011357999999998874
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+...++||.|+-.... +.+.......++..+.++|||||.++
T Consensus 108 --~~~~~~fD~i~D~~~~-~~l~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 108 --AADLGPVDAVYDRAAL-IALPEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred --cccCCCcCEEEechhh-ccCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 1123579999865422 23356677889999999999999866
No 83
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.30 E-value=1.6e-11 Score=126.21 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
....+.++||||||+|.++..+|+. +...++|+|+++.++..|.+++..+++ .++.++++|+..+
T Consensus 119 ~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL--------------~NV~~i~~DA~~l 184 (390)
T PRK14121 119 SKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL--------------KNLLIINYDARLL 184 (390)
T ss_pred cCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEECCHHHh
Confidence 3345679999999999999999988 446999999999999999999998887 5899999999875
Q ss_pred ccccCCCCCceeEEEeccccccccChhh------HHHHHHHHhccccCCcEEeccCce
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESM------LSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~------l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.. .++++++|.|++.. ...+... ...++.++.|+|+|||.+.+.+..
T Consensus 185 l~--~~~~~s~D~I~lnF---PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 185 LE--LLPSNSVEKIFVHF---PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hh--hCCCCceeEEEEeC---CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 32 36789999999653 2222111 267899999999999999865543
No 84
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.29 E-value=1.5e-11 Score=128.19 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||+|||||.+++.++..|+.+|++||+|+.+++.|++++..|++. .++++++++|+.++...
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~------------~~~v~~i~~D~~~~l~~ 286 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD------------LSKAEFVRDDVFKLLRT 286 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CCcEEEEEccHHHHHHH
Confidence 468999999999999999888778889999999999999999999999872 13799999999876311
Q ss_pred cCCCCCceeEEEeccccccccCh-------hhHHHHHHHHhccccCCcEEeccCcee
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYE-------SMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~-------~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+.....+||+|+++++.+. ... .....++....++|+|||.|+..+|+-
T Consensus 287 ~~~~~~~fDlVilDPP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 287 YRDRGEKFDVIVMDPPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred HHhcCCCCCEEEECCCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 1112468999999975432 121 123455567789999999999766654
No 85
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.29 E-value=5.1e-12 Score=114.65 Aligned_cols=138 Identities=29% Similarity=0.376 Sum_probs=115.2
Q ss_pred hhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCC
Q 010913 270 GIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDR 349 (497)
Q Consensus 270 ~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~ 349 (497)
.+|-.++.|..|...|+.+|..... .++.|+|+|+|++|+.+|.+ +.+|+||+.+|.....|.+++.-+|+
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~---- 79 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD---- 79 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC----
Confidence 4788899999999999999987653 78999999999999999998 78999999999999999999888887
Q ss_pred CCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEee
Q 010913 350 PQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAG 429 (497)
Q Consensus 350 ~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~ 429 (497)
.++.++.||+.+.+ + ...|+|+|+.+.-.|..+.. -.++.++...||..|.++|.....-..+
T Consensus 80 ----------~n~evv~gDA~~y~----f--e~ADvvicEmlDTaLi~E~q-VpV~n~vleFLr~d~tiiPq~v~~~a~p 142 (252)
T COG4076 80 ----------VNWEVVVGDARDYD----F--ENADVVICEMLDTALIEEKQ-VPVINAVLEFLRYDPTIIPQEVRIGANP 142 (252)
T ss_pred ----------cceEEEeccccccc----c--cccceeHHHHhhHHhhcccc-cHHHHHHHHHhhcCCccccHHHhhccCc
Confidence 68999999999874 4 67899999976656655544 4488888889999999998766554444
Q ss_pred ecCC
Q 010913 430 FGRG 433 (497)
Q Consensus 430 ~~~~ 433 (497)
+..+
T Consensus 143 v~~~ 146 (252)
T COG4076 143 VRRP 146 (252)
T ss_pred cccC
Confidence 4443
No 86
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=3.6e-11 Score=121.50 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=83.8
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.+++ .++++++++|+.+.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-------------~~~i~~~~~D~~~~---- 196 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-------------EDRVTLIESDLFAA---- 196 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------------CCcEEEEECchhhh----
Confidence 368999999999999999987 345999999999999999999998887 24799999998653
Q ss_pred CCCCCceeEEEecccccc----------ccCh------------hhHHHHHHHHhccccCCcEEecc
Q 010913 377 QIQPHSVDVLVSEWMGYC----------LLYE------------SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~----------l~~~------------~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.++||+|++++.-.. ..++ .....++..+.++|+|||.+++.
T Consensus 197 -l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 197 -LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred -CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34568999999852110 0111 12357788899999999999854
No 87
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.29 E-value=3.5e-11 Score=120.57 Aligned_cols=124 Identities=25% Similarity=0.345 Sum_probs=90.5
Q ss_pred hHHHHHHHHhCC-CCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENP-SLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 282 ~~~y~~~i~~~~-~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
++.+...++... ...++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|+++++.+++ .
T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-------------~ 164 (284)
T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-------------E 164 (284)
T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------C
Confidence 444444444322 11233799999999999999999873 35999999999999999999998887 2
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccc----------cccCh------------hhHHHHHHHHhccccCCcE
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGY----------CLLYE------------SMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~----------~l~~~------------~~l~~vL~~~~r~LkpgG~ 417 (497)
.++.++++|+.+. ++..+||+|+|++.-. ...++ .....++..+.++|+|||.
T Consensus 165 ~~v~~~~~d~~~~-----~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 165 HRVEFIQSNLFEP-----LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGF 239 (284)
T ss_pred CcEEEEECchhcc-----CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 4699999998653 4445899999985211 11121 1356788889999999999
Q ss_pred EeccCc
Q 010913 418 ILPDTA 423 (497)
Q Consensus 418 li~~~~ 423 (497)
+++...
T Consensus 240 l~~e~g 245 (284)
T TIGR00536 240 LVCEIG 245 (284)
T ss_pred EEEEEC
Confidence 985444
No 88
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=3.7e-11 Score=112.22 Aligned_cols=107 Identities=28% Similarity=0.378 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..+++.+ .++.++.+|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~------------~~~~~~~~d~~~~--- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRN------------NGVEVIRSDLFEP--- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCC------------cceEEEecccccc---
Confidence 5788999999999999999999865 99999999999999999998877621 1288888887653
Q ss_pred cCCCCCceeEEEecccccc--------------cc----ChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYC--------------LL----YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~--------------l~----~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+...+||+|+++..... +. ....+..++.++.++|||||.+++
T Consensus 86 --~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 86 --FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred --ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 44558999998753211 00 122356789999999999999874
No 89
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.28 E-value=3.8e-11 Score=115.46 Aligned_cols=117 Identities=25% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQS-EGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~-~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..++.+|||+|||.|..+..||+.|. +|+|||+|+.+++.|. .++++.....+. ........+|+++++|+.++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~---~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFF---AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHH---HHcCCCccccccccccccccCceEEEECcccCCC
Confidence 35678999999999999999999999 8999999999998764 234442111000 001112357999999998874
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+...+.||.|+...+.. .+..+....++..+.++|+|||+++
T Consensus 111 ---~~~~~~fd~v~D~~~~~-~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 ---AADLADVDAVYDRAALI-ALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ---cccCCCeeEEEehHhHh-hCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 12235899999754332 3456778899999999999999754
No 90
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.8e-11 Score=118.26 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=94.6
Q ss_pred hhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 281 r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
+.+.-.+.++.++....+.+|||+|||.|.+++.+++. +..+|+.+|+|..+++.|++++..|++
T Consensus 142 ~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~-------------- 207 (300)
T COG2813 142 KLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV-------------- 207 (300)
T ss_pred CcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC--------------
Confidence 34556777888888777779999999999999999998 567999999999999999999999987
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEe
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li 419 (497)
.+..++..++.+- ... +||+|+|++..+.-... .-..+++.+..++|++||.|.
T Consensus 208 ~~~~v~~s~~~~~-----v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 208 ENTEVWASNLYEP-----VEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred CccEEEEeccccc-----ccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 3336777776553 333 99999999865432111 112488999999999999987
No 91
>PLN03075 nicotianamine synthase; Provisional
Probab=99.27 E-value=4.7e-11 Score=118.60 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCCHh-HHHHH-Hc-CCCEEEEEeCCHHHHHHHHHHHHh-CCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGIL-SLFAA-QA-GASRVIAVEASEKMAAVATQIAKD-NDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~l-s~~la-~~-G~~~V~gvD~S~~~i~~A~~~~~~-~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.++++|+|||||.|.+ ++.++ ++ +.++++|+|+++.+++.|++.+.. .++ .++|+|..+|+.+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-------------~~rV~F~~~Da~~ 188 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-------------SKRMFFHTADVMD 188 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-------------cCCcEEEECchhh
Confidence 3789999999998855 33333 34 446899999999999999999964 676 3689999999987
Q ss_pred cccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEeccC
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.. ...+.||+|++. ++.+. ++...++..+.+.|+|||.++...
T Consensus 189 ~~----~~l~~FDlVF~~----ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VT----ESLKEYDVVFLA----ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cc----cccCCcCEEEEe----cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 52 234689999975 33333 678999999999999999999554
No 92
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.27 E-value=6.4e-11 Score=115.94 Aligned_cols=118 Identities=25% Similarity=0.260 Sum_probs=88.8
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
..+...++.... ..+.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++..+++ ++
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~ 138 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL--------------DN 138 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------Ce
Confidence 334444444332 34569999999999999999987 445999999999999999999988886 47
Q ss_pred eEEEecchhhcccccCCCCCceeEEEecccccccc-----------C------------hhhHHHHHHHHhccccCCcEE
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-----------Y------------ESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~-----------~------------~~~l~~vL~~~~r~LkpgG~l 418 (497)
+.++.+|+.+. ++.++||+|+++++..... + ......++..+.++|+|||.+
T Consensus 139 ~~~~~~d~~~~-----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~ 213 (251)
T TIGR03534 139 VTFLQSDWFEP-----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWL 213 (251)
T ss_pred EEEEECchhcc-----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEE
Confidence 99999998763 4568999999975321100 0 011246788999999999999
Q ss_pred ec
Q 010913 419 LP 420 (497)
Q Consensus 419 i~ 420 (497)
++
T Consensus 214 ~~ 215 (251)
T TIGR03534 214 LL 215 (251)
T ss_pred EE
Confidence 84
No 93
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=3.8e-11 Score=114.37 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.++.+|||||||+|.++..+++. +..+|+|||+|+.|++.|+++. .++.++++++.+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------------------~~~~~~~~d~~~-- 99 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------------------PNINIIQGSLFD-- 99 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------------------CCCcEEEeeccC--
Confidence 356789999999999999999887 4459999999999999998753 246778888766
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+++.++||+|++..+.+++ ....+..++.++.|++ ++.++
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl-~p~~~~~~l~el~r~~--~~~v~ 139 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHI-NPDNLPTAYRELYRCS--NRYIL 139 (204)
T ss_pred ---CCCCCCEEEEEECChhhhC-CHHHHHHHHHHHHhhc--CcEEE
Confidence 3678899999987644333 3456788999999988 34555
No 94
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.26 E-value=6.4e-11 Score=112.08 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred hHHHHHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 282 ~~~y~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
++..++.++.... ..++.+|||+|||+|.+++.++..++.+|++||.++.+++.|+++++.+++ .
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~--------------~ 102 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA--------------G 102 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC--------------C
Confidence 3444444444332 246789999999999999987666777999999999999999999998886 4
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHh--ccccCCcEEeccCc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD--QWLKPGGAILPDTA 423 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~--r~LkpgG~li~~~~ 423 (497)
++.++++|+.+.. +....+||+|+++++ |. ......++..+. .+|+|+|++++...
T Consensus 103 ~v~~~~~D~~~~l---~~~~~~fDlV~~DPP-y~---~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 103 NARVVNTNALSFL---AQPGTPHNVVFVDPP-FR---KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred cEEEEEchHHHHH---hhcCCCceEEEECCC-CC---CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 7999999997752 122456999999975 21 122344455443 45899999986544
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.26 E-value=3.9e-11 Score=124.15 Aligned_cols=131 Identities=22% Similarity=0.279 Sum_probs=96.4
Q ss_pred chhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCC
Q 010913 269 FGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWW 347 (497)
Q Consensus 269 ~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~ 347 (497)
|.+....+-.+..|+.+.+.++... .++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.++.
T Consensus 225 f~V~p~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-- 300 (423)
T PRK14966 225 FAVNPNVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-- 300 (423)
T ss_pred EEeCCCccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--
Confidence 3344444555666778888777654 35679999999999999998875 456999999999999999999987764
Q ss_pred CCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEecccccccc-----------Ch------------hhHHHH
Q 010913 348 DRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-----------YE------------SMLSSV 404 (497)
Q Consensus 348 ~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~-----------~~------------~~l~~v 404 (497)
++.++++|+.+.. .+ ..++||+|+|+++ |.-. ++ .....+
T Consensus 301 -------------rV~fi~gDl~e~~--l~-~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~I 363 (423)
T PRK14966 301 -------------RVEFAHGSWFDTD--MP-SEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTL 363 (423)
T ss_pred -------------cEEEEEcchhccc--cc-cCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHH
Confidence 7999999986542 11 2457999999874 2110 00 123467
Q ss_pred HHHHhccccCCcEEec
Q 010913 405 LFARDQWLKPGGAILP 420 (497)
Q Consensus 405 L~~~~r~LkpgG~li~ 420 (497)
+..+.++|+|||.+++
T Consensus 364 i~~a~~~LkpgG~lil 379 (423)
T PRK14966 364 AQGAPDRLAEGGFLLL 379 (423)
T ss_pred HHHHHHhcCCCcEEEE
Confidence 7777899999999874
No 96
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.26 E-value=6e-11 Score=113.64 Aligned_cols=109 Identities=21% Similarity=0.166 Sum_probs=84.7
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....++..+.+.++.+|||+|||+|.++..+++.+. +|+++|+++.+++.|++++...++ .++.+
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~--------------~~v~~ 130 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGL--------------HNVSV 130 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCC--------------CceEE
Confidence 344555566678899999999999999998888854 899999999999999999988877 46999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+.+|..+.. .+.++||+|++.. .. ..+...+.+.|+|||.+++.
T Consensus 131 ~~~d~~~~~----~~~~~fD~I~~~~---~~------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 131 RHGDGWKGW----PAYAPFDRILVTA---AA------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred EECCcccCC----CcCCCcCEEEEcc---Cc------hhhhHHHHHhcCCCcEEEEE
Confidence 999975531 1347899999653 22 12234567899999998843
No 97
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.24 E-value=2e-11 Score=120.87 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCCCCH----hHHHHHHcC------CCEEEEEeCCHHHHHHHHHHHHh----CCCCC---------CCCC
Q 010913 295 LMKGAVVMDIGCGTGI----LSLFAAQAG------ASRVIAVEASEKMAAVATQIAKD----NDFWW---------DRPQ 351 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~----ls~~la~~G------~~~V~gvD~S~~~i~~A~~~~~~----~gl~~---------~~~~ 351 (497)
..++.+|||+|||||. +++.+++.+ ..+|+|+|+|+.|++.|++.+.. .++.. ....
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456899999999996 566666652 24899999999999999875311 11100 0000
Q ss_pred CCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 352 SEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 352 ~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+......+|.|.++|+.+.. .+.++||+|+|..+...+ ..+....++..+.++|+|||.|++..
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~----~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAES----PPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCC----CccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0011112347899999998863 457899999986532222 23566789999999999999998543
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.24 E-value=3.2e-11 Score=109.17 Aligned_cols=117 Identities=23% Similarity=0.310 Sum_probs=90.3
Q ss_pred CCCCC-EEEEEcCCCCHhHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGA-VVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~-~VLDvGCGtG~ls~~la~~G~~-~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
+.+.. +|||+|||.|.+...|++.|.. ..+|||.|+.+++.|+.++++.++. +.|+|.+.|+.+.
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-------------n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-------------NEIRFQQLDITDP 130 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-------------cceeEEEeeccCC
Confidence 33444 9999999999999999999874 5999999999999999999999983 4699999999886
Q ss_pred ccccCCCCCceeEEEeccc--ccccc---ChhhHHHHHHHHhccccCCcEEeccCceeEEe
Q 010913 373 GESMQIQPHSVDVLVSEWM--GYCLL---YESMLSSVLFARDQWLKPGGAILPDTATMFVA 428 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~--~~~l~---~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~ 428 (497)
+ +..++||+|+--.. ...|. ....+...+..+.+.|+|||++++.+|+....
T Consensus 131 ~----~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~d 187 (227)
T KOG1271|consen 131 D----FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKD 187 (227)
T ss_pred c----ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHH
Confidence 4 66788888874321 11121 12233456677899999999999888876433
No 99
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.23 E-value=3.7e-11 Score=134.32 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||+|||||.+++.+++.|+.+|++||+|+.+++.|++++..||+. ..+++++++|+.++..
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~------------~~~v~~i~~D~~~~l~- 603 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS------------GRQHRLIQADCLAWLK- 603 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------------ccceEEEEccHHHHHH-
Confidence 358899999999999999999999988999999999999999999999872 1479999999987531
Q ss_pred cCCCCCceeEEEeccccccc--------cChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCL--------LYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l--------~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
-...+||+||+++..+.- ........++..+.++|+|||.++++++
T Consensus 604 --~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 604 --EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred --HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 125689999998743221 1123456778888999999999986554
No 100
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.23 E-value=9.7e-11 Score=116.08 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=90.5
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+.+|.+|||+|||+|..+..+++. + ...|+|+|+++.+++.++++++.+|+ .+|.++.+|+..
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~--------------~~v~~~~~D~~~ 133 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV--------------LNVAVTNFDGRV 133 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CcEEEecCCHHH
Confidence 4568899999999999999998876 2 35899999999999999999999987 479999999887
Q ss_pred cccccCCCCCceeEEEeccc----ccccc--------Chh-------hHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 372 LGESMQIQPHSVDVLVSEWM----GYCLL--------YES-------MLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~----~~~l~--------~~~-------~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
+. ...++||+|++... +..-. ... ....+|..+.++|||||+|+.++|++..
T Consensus 134 ~~----~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 134 FG----AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred hh----hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 63 33456999997542 11111 111 1245889999999999999988887643
No 101
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.23 E-value=4.5e-11 Score=119.03 Aligned_cols=93 Identities=19% Similarity=0.329 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C---CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G---ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G---~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.++.+|||+|||+|.++..+++. + ...|+|+|+|+.+++.|+++. .++.++.+++.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------------------~~~~~~~~d~~~ 144 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------------------PQVTFCVASSHR 144 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------------------CCCeEEEeeccc
Confidence 35578999999999999988875 2 137999999999999887652 367899999887
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ |++.++||+|++.. . ...+.++.|+|||||.++..
T Consensus 145 l----p~~~~sfD~I~~~~---~-------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 145 L----PFADQSLDAIIRIY---A-------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred C----CCcCCceeEEEEec---C-------CCCHHHHHhhccCCCEEEEE
Confidence 6 57888999999742 1 12457789999999999853
No 102
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=9.6e-11 Score=124.60 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=91.2
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
.+...+|.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.++++++..|+ .+|+++.+|+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--------------~~v~~~~~Da 310 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--------------TIIETIEGDA 310 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--------------CeEEEEeCcc
Confidence 445578899999999999999888875 235999999999999999999999887 4799999999
Q ss_pred hhcccccCCCCCceeEEEecc----cccccc--------Chh-------hHHHHHHHHhccccCCcEEeccCceeE
Q 010913 370 EELGESMQIQPHSVDVLVSEW----MGYCLL--------YES-------MLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~----~~~~l~--------~~~-------~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
..+. +..+||+|++.. .+.... ... ....+|..+.++|||||+++.++|++.
T Consensus 311 ~~~~-----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 311 RSFS-----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred cccc-----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 8762 456899999643 121110 111 123689999999999999999998874
No 103
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=7.9e-11 Score=124.82 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=93.8
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
..+...+|.+|||+|||+|..+..+++. + .++|+|+|+++.+++.++++++.+|+ .+|.++.+|
T Consensus 246 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~--------------~~v~~~~~D 311 (434)
T PRK14901 246 PLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL--------------KSIKILAAD 311 (434)
T ss_pred HHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC--------------CeEEEEeCC
Confidence 3345678899999999999999999886 3 35899999999999999999999987 479999999
Q ss_pred hhhcccccCCCCCceeEEEeccc----cccccCh--------h-------hHHHHHHHHhccccCCcEEeccCceeE
Q 010913 369 VEELGESMQIQPHSVDVLVSEWM----GYCLLYE--------S-------MLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~----~~~l~~~--------~-------~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
+..+....+...++||.|++... +..-.++ . ....+|.++.++|||||+|+.++|+++
T Consensus 312 ~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 312 SRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred hhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 98763211133578999997542 2111111 1 135789999999999999998888774
No 104
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=8.4e-11 Score=124.26 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=92.7
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
...+.+|.+|||+|||+|..+..++.. +..+|+|+|+++.+++.++++++..|+ .++.++.+|+
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~--------------~~v~~~~~Da 297 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL--------------SSIEIKIADA 297 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CeEEEEECch
Confidence 345678999999999999999998886 345999999999999999999999887 4689999998
Q ss_pred hhcccccCCCCCceeEEEeccc----cccccCh---------------hhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 370 EELGESMQIQPHSVDVLVSEWM----GYCLLYE---------------SMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~----~~~l~~~---------------~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
..+. .+..++||.|++... +..-.+. .....+|..+.++|||||.++.++|++.
T Consensus 298 ~~l~---~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 298 ERLT---EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhhh---hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 8763 134568999997542 2211111 1235678899999999999999999864
No 105
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=1.7e-10 Score=114.70 Aligned_cols=124 Identities=27% Similarity=0.303 Sum_probs=92.7
Q ss_pred chhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 278 DKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 278 d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
....++.+.+.++......++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++. ++.
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~----------- 156 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL----------- 156 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC-----------
Confidence 344566777777655555678899999999999999999883 4699999999999999999987 222
Q ss_pred CCCCceEEEecchhhcccccCCCCCceeEEEecccccccc-----------C------------hhhHHHHHHHHhcccc
Q 010913 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-----------Y------------ESMLSSVLFARDQWLK 413 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~-----------~------------~~~l~~vL~~~~r~Lk 413 (497)
..++.++.+|+... ++.++||+|++++...... + ......++..+.++|+
T Consensus 157 --~~~i~~~~~d~~~~-----~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk 229 (275)
T PRK09328 157 --GARVEFLQGDWFEP-----LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK 229 (275)
T ss_pred --CCcEEEEEccccCc-----CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc
Confidence 25799999998543 3457899999975311000 0 1223567788889999
Q ss_pred CCcEEec
Q 010913 414 PGGAILP 420 (497)
Q Consensus 414 pgG~li~ 420 (497)
|||.+++
T Consensus 230 ~gG~l~~ 236 (275)
T PRK09328 230 PGGWLLL 236 (275)
T ss_pred cCCEEEE
Confidence 9999985
No 106
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=1.1e-10 Score=123.41 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=91.9
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
..+...+|.+|||+|||+|..+..+++.+. .+|+|+|+++.+++.++++++.+|+ +++++.+|+
T Consensus 238 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~---------------~~~~~~~D~ 302 (427)
T PRK10901 238 TLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL---------------KATVIVGDA 302 (427)
T ss_pred HHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CeEEEEcCc
Confidence 344567899999999999999999998743 5999999999999999999998886 468999998
Q ss_pred hhcccccCCCCCceeEEEecccccc---c---------cChhh-------HHHHHHHHhccccCCcEEeccCceeEE
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYC---L---------LYESM-------LSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~---l---------~~~~~-------l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
.++.. .++.++||.|+++..-.. + ....+ ...+|..+.++|||||.++.++|++..
T Consensus 303 ~~~~~--~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 303 RDPAQ--WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred ccchh--hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 76531 123568999997653111 0 11111 246889999999999999988887643
No 107
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.21 E-value=1.4e-10 Score=112.10 Aligned_cols=103 Identities=23% Similarity=0.272 Sum_probs=79.4
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..++.+|||||||+|.++..+++.+. .|+|+|+|+.+++.|++++...++ ..++.+..+++..
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-------------~~~i~~~~~d~~~--- 123 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-------------AGNITFEVGDLES--- 123 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-------------ccCcEEEEcCchh---
Confidence 45778999999999999999999887 799999999999999999877665 2478999988432
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..++||+|++....+. .....+..++..+.+.+++++++.
T Consensus 124 ----~~~~fD~v~~~~~l~~-~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 124 ----LLGRFDTVVCLDVLIH-YPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred ----ccCCcCEEEEcchhhc-CCHHHHHHHHHHHHhhcCCeEEEE
Confidence 3578999997542211 123466788888888776655544
No 108
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.21 E-value=1.3e-10 Score=117.71 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=89.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
..+.+.......++.+|||||||+|.++..++++ +..+++++|. +.+++.|++++...|+ .++|+
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-------------~~rv~ 202 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-------------ADRMR 202 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-------------cceEE
Confidence 3455666666778899999999999999999988 4458999998 6899999999988887 36899
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+|+.+.. ++ .+|+|+.. .++++. .....+|.++.+.|+|||++++.
T Consensus 203 ~~~~d~~~~~----~~--~~D~v~~~---~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 203 GIAVDIYKES----YP--EADAVLFC---RILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEecCccCCC----CC--CCCEEEeE---hhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999987642 33 36998843 344433 34567999999999999999844
No 109
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.21 E-value=1e-10 Score=118.20 Aligned_cols=105 Identities=24% Similarity=0.202 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++++..+.. .....++.+..+|+..+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~---------~~~~~~~~f~~~Dl~~l--- 209 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAA---------LPPEVLPKFEANDLESL--- 209 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccc---------cccccceEEEEcchhhc---
Confidence 3678999999999999999999987 8999999999999999998654210 00013678888887653
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.++||+|+|..+..++ .......++..+.+ +.+||+++
T Consensus 210 ----~~~fD~Vv~~~vL~H~-p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 210 ----SGKYDTVTCLDVLIHY-PQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred ----CCCcCEEEEcCEEEec-CHHHHHHHHHHHHh-hcCCEEEE
Confidence 4689999976532221 12234456666664 56777766
No 110
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.21 E-value=6.4e-11 Score=122.09 Aligned_cols=117 Identities=20% Similarity=0.207 Sum_probs=96.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+|++||++-|-||.+|+.+|..||++|++||+|...++.|+++++.||+. ..++.++++|+.++-...
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~------------~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD------------GDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC------------ccceeeehhhHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999984 367899999998874332
Q ss_pred CCCCCceeEEEeccccccccC------hhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 377 QIQPHSVDVLVSEWMGYCLLY------ESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~------~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
.-...+||+||..++.+.-.. ..+...++..+.++|+|||+++.++|+.
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 233559999999886554211 2345678888999999999999777654
No 111
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.20 E-value=1.3e-10 Score=125.15 Aligned_cols=107 Identities=22% Similarity=0.296 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++++..+++ .+++.++.+|+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-------------~~~v~~~~~D~~~~--- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-------------TDRIQIIHSNWFEN--- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-------------ccceeeeecchhhh---
Confidence 4578999999999999988876 555999999999999999999988887 25799999998653
Q ss_pred cCCCCCceeEEEecccccc-----------ccCh------------hhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYC-----------LLYE------------SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~-----------l~~~------------~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.++||+|+|++.... ..++ .....++..+.++|+|||.+++.
T Consensus 202 --~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 202 --IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred --CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 34568999999762111 0111 12345677888999999999854
No 112
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.20 E-value=8.1e-11 Score=114.51 Aligned_cols=111 Identities=18% Similarity=0.163 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...++++|||+|||+|..++.+++. +..+|+++|+++.+++.|+++++.+|+ .++|+++.|++.+
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-------------~~~i~~~~gda~~ 131 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-------------DHKINFIQSDALS 131 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEEccHHH
Confidence 3456889999999999988888775 456999999999999999999999998 3589999999977
Q ss_pred cccccC--CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 372 LGESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 372 l~~~l~--~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.-..+. .+.++||+|+... .......++..+.++|+|||+++++..
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 521110 1246899999643 224455678888999999999997654
No 113
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=1.3e-10 Score=123.56 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=93.7
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.+...+.+.++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++++.+|+ .++.++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~--------------~~v~~~ 306 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL--------------TNIETK 306 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CeEEEE
Confidence 3444445678899999999999999999986 346999999999999999999999987 469999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccc--cc-c---------Chhh-------HHHHHHHHhccccCCcEEeccCceeE
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGY--CL-L---------YESM-------LSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~--~l-~---------~~~~-------l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
.+|+..+.. ++ .++||+|++...-. .. . ...+ ...+|..+.++|||||.|+.++|++.
T Consensus 307 ~~D~~~~~~--~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 307 ALDARKVHE--KF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred eCCcccccc--hh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 999987531 12 26899999865311 11 0 1111 24578999999999999998888764
Q ss_pred E
Q 010913 427 V 427 (497)
Q Consensus 427 ~ 427 (497)
.
T Consensus 384 ~ 384 (444)
T PRK14902 384 K 384 (444)
T ss_pred h
Confidence 3
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.18 E-value=2.7e-10 Score=111.97 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=84.6
Q ss_pred hHHHHHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 282 ~~~y~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
++.+.+.++.... ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++++..++
T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--------------- 134 (251)
T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--------------- 134 (251)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------------
Confidence 4555555544332 123468999999999999999876 34589999999999999999987764
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccc------c-----Ch------------hhHHHHHHHHhccccCCc
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL------L-----YE------------SMLSSVLFARDQWLKPGG 416 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l------~-----~~------------~~l~~vL~~~~r~LkpgG 416 (497)
++++++|+.+... ....++||+|++++...-. . ++ ..+..++..+.++|+|||
T Consensus 135 --~~~~~~D~~~~l~--~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG 210 (251)
T TIGR03704 135 --GTVHEGDLYDALP--TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGG 210 (251)
T ss_pred --CEEEEeechhhcc--hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 3678888865310 0113579999998642110 0 10 113577888889999999
Q ss_pred EEecc
Q 010913 417 AILPD 421 (497)
Q Consensus 417 ~li~~ 421 (497)
.+++.
T Consensus 211 ~l~l~ 215 (251)
T TIGR03704 211 HLLVE 215 (251)
T ss_pred EEEEE
Confidence 99844
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=2.8e-10 Score=115.34 Aligned_cols=108 Identities=24% Similarity=0.221 Sum_probs=83.1
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+++...+.++.+|||||||+|.++..+++. +. ..|+|+|+++.+++.|+++++.+|+ +++.
T Consensus 69 ~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~--------------~nV~ 134 (322)
T PRK13943 69 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI--------------ENVI 134 (322)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CcEE
Confidence 334555556778899999999999999999987 32 4799999999999999999988886 5799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++.+|+.... ....+||+|++.. .+ ..+...+.+.|+|||.++.
T Consensus 135 ~i~gD~~~~~----~~~~~fD~Ii~~~---g~------~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 135 FVCGDGYYGV----PEFAPYDVIFVTV---GV------DEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred EEeCChhhcc----cccCCccEEEECC---ch------HHhHHHHHHhcCCCCEEEE
Confidence 9999987652 2346799999642 22 1123345678999999874
No 116
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.2e-10 Score=114.22 Aligned_cols=101 Identities=30% Similarity=0.442 Sum_probs=79.4
Q ss_pred EEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
+|||+|||+|.+++.+++.+. ..|+|+|+|+.+++.|++++..+|+ .++.++++|...- +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--------------~~~~~~~~dlf~~-----~ 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--------------VRVLVVQSDLFEP-----L 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--------------ccEEEEeeecccc-----c
Confidence 899999999999999999843 5999999999999999999999987 3677777765542 3
Q ss_pred CCCceeEEEecccccccc-----------C------------hhhHHHHHHHHhccccCCcEEecc
Q 010913 379 QPHSVDVLVSEWMGYCLL-----------Y------------ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l~-----------~------------~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++||+|||++. |.-. + ..-...++..+.++|+|||.+++.
T Consensus 174 -~~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 174 -RGKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred -CCceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 349999999973 2111 1 112357788889999999998843
No 117
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.17 E-value=2.7e-10 Score=114.99 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=83.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.+...|.... .++.+|||+|||||..+..++++. ..+|+|+|+|+.|++.|++++..... .-+
T Consensus 52 ~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-------------~~~ 116 (301)
T TIGR03438 52 RHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-------------QLE 116 (301)
T ss_pred HHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-------------Cce
Confidence 3444444433 467899999999999999998884 24899999999999999988765321 126
Q ss_pred eEEEecchhhcccccCCCCC----ceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 362 MEVVQGMVEELGESMQIQPH----SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~----~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
|.++++|+.+.. +++.. ...++++.. ....+.......+|..+.++|+|||.+++..
T Consensus 117 v~~i~gD~~~~~---~~~~~~~~~~~~~~~~gs-~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 117 VHGICADFTQPL---ALPPEPAAGRRLGFFPGS-TIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEEEEcccchh---hhhcccccCCeEEEEecc-cccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 788999987631 12222 222333221 1222345667889999999999999998543
No 118
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=2.8e-10 Score=121.07 Aligned_cols=118 Identities=22% Similarity=0.210 Sum_probs=89.8
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
++.+.+.++......++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|++++..+++ .+
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~--------------~~ 346 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGL--------------DN 346 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCC--------------Cc
Confidence 445566666666667889999999999999999998874 999999999999999999998887 47
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++.+|+.+.....++...+||+|++++.-.. ...++..+.+ ++|+++++++
T Consensus 347 v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g------~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 347 VTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG------AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred eEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC------hHHHHHHHHh-cCCCeEEEEE
Confidence 999999997642112234568999998763221 2345555555 6898887744
No 119
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.16 E-value=3.3e-10 Score=93.17 Aligned_cols=102 Identities=34% Similarity=0.438 Sum_probs=81.8
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
+|+|+|||+|.++..+++.+..+++++|+++.++..+++.....+ ..++.++.+++.+.. ...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---~~~ 63 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL--------------ADNVEVLKGDAEELP---PEA 63 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc--------------ccceEEEEcChhhhc---ccc
Confidence 489999999999999988656699999999999988886443333 257899999998864 124
Q ss_pred CCceeEEEeccccccccC-hhhHHHHHHHHhccccCCcEEecc
Q 010913 380 PHSVDVLVSEWMGYCLLY-ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 380 ~~~fDvIvs~~~~~~l~~-~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.+++|+|++..+ +.+ ......++..+.+.|+|||.+++.
T Consensus 64 ~~~~d~i~~~~~---~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPP---LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccc---eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 678999997663 333 667889999999999999999854
No 120
>PRK04457 spermidine synthase; Provisional
Probab=99.16 E-value=2.2e-10 Score=113.38 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=87.7
Q ss_pred HHHHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.|.+.++.... ..++++|||||||+|.++..+++. +..+|++||+++.+++.|++.+...+. .++
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-------------~~r 118 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-------------GER 118 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-------------CCc
Confidence 45555533222 245789999999999999999877 556999999999999999998754432 268
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccc-cccChhhHHHHHHHHhccccCCcEEecc
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGY-CLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~-~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++++.+|+.++- .-.+++||+|++..... .....-....++..+.+.|+|||+++++
T Consensus 119 v~v~~~Da~~~l---~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 119 FEVIEADGAEYI---AVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eEEEECCHHHHH---HhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 999999987752 22346899999764211 1110012368999999999999999854
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.15 E-value=2.5e-10 Score=120.81 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=90.6
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
+...+...+|.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++++..|+ ...+.++.+
T Consensus 230 ~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-------------~~~v~~~~~ 296 (426)
T TIGR00563 230 VATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-------------TIKAETKDG 296 (426)
T ss_pred HHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEecc
Confidence 334445678999999999999999999986 545999999999999999999999887 123445667
Q ss_pred chhhcccccCCCCCceeEEEeccc--cccc-cChh----------------hHHHHHHHHhccccCCcEEeccCceeE
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWM--GYCL-LYES----------------MLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~--~~~l-~~~~----------------~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
+...... ..+.++||+|++..+ +... ...+ ....+|.++.++|||||.|+.++|++.
T Consensus 297 d~~~~~~--~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 297 DGRGPSQ--WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccc--cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 7654320 014568999997532 1111 1111 135789999999999999999998874
No 122
>PRK06202 hypothetical protein; Provisional
Probab=99.15 E-value=2e-10 Score=111.62 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc----CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA----GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~----G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
.++.+|||||||+|.++..+++. |. .+|+|+|+|+.|++.|+++...+ ++.+..++..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----------------~~~~~~~~~~ 121 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----------------GVTFRQAVSD 121 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----------------CCeEEEEecc
Confidence 56789999999999998888753 32 38999999999999998775433 3556666665
Q ss_pred hcccccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li 419 (497)
.+. .++++||+|+++. +++|.. .+..++.++.++++ |++++
T Consensus 122 ~l~----~~~~~fD~V~~~~---~lhh~~d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 122 ELV----AEGERFDVVTSNH---FLHHLDDAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccc----ccCCCccEEEECC---eeecCChHHHHHHHHHHHHhcC-eeEEE
Confidence 553 4578999999875 344433 35689999999998 45544
No 123
>PRK00811 spermidine synthase; Provisional
Probab=99.15 E-value=3.3e-10 Score=113.37 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++++||+||||+|.++..++++ +..+|++||+++.+++.|++.+...+. .....++++++.+|+..+-
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~---------~~~~d~rv~v~~~Da~~~l- 144 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAG---------GAYDDPRVELVIGDGIKFV- 144 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcc---------ccccCCceEEEECchHHHH-
Confidence 35689999999999999999988 677999999999999999998754221 0011368999999998863
Q ss_pred ccCCCCCceeEEEeccccccccChh-hHHHHHHHHhccccCCcEEeccCce
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~-~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
....++||+|++........... ....++..+.+.|+|||+++....+
T Consensus 145 --~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 145 --AETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred --hhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 23467899999864211111111 1257788999999999999965443
No 124
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.13 E-value=3.3e-10 Score=108.35 Aligned_cols=101 Identities=23% Similarity=0.308 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
+.++.+|||||||||.++..+++. |. .+|+|||+++ | +.+ .+++++++|+.+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--------------~~v~~i~~D~~~~ 103 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--------------VGVDFLQGDFRDE 103 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--------------CCcEEEecCCCCh
Confidence 467889999999999999999887 33 5899999998 2 112 3589999998874
Q ss_pred cc--c--cCCCCCceeEEEeccccccccCh--h------hHHHHHHHHhccccCCcEEec
Q 010913 373 GE--S--MQIQPHSVDVLVSEWMGYCLLYE--S------MLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 373 ~~--~--l~~~~~~fDvIvs~~~~~~l~~~--~------~l~~vL~~~~r~LkpgG~li~ 420 (497)
.. . -++..++||+|+|+...+..... . ....+|..+.++|||||.+++
T Consensus 104 ~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 104 LVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred HHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 20 0 02456889999997532222111 0 124688999999999999984
No 125
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.13 E-value=6e-10 Score=104.85 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||++||+|.+++.++.+|+.+|++||.++.+++.+++++..+++ .++++++++|+...-..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-------------~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-------------GEQAEVVRNSALRALKF 114 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------------cccEEEEehhHHHHHHH
Confidence 46889999999999999999999999999999999999999999999987 24789999999664211
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHH--hccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR--DQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~--~r~LkpgG~li~~~~ 423 (497)
+.-....+|+|+..+. |.-. ....++..+ ..+|+++|+++..+.
T Consensus 115 ~~~~~~~~dvv~~DPP-y~~~---~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPP-FFNG---ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred hhccCCCceEEEECcC-CCCC---cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1111234888887753 2221 223333333 458999999986544
No 126
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=5e-10 Score=107.48 Aligned_cols=111 Identities=25% Similarity=0.329 Sum_probs=95.1
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.|.....+.+|.+|||.|.|+|.++..+|++ | .++|+.+|+-+..++.|+++++..++. ++|++.
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-------------d~v~~~ 151 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-------------DRVTLK 151 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-------------cceEEE
Confidence 4677788999999999999999999999987 4 479999999999999999999998883 469999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.+|+.+.. ....||+|+... +++..++..+.+.|||||.+++-.++
T Consensus 152 ~~Dv~~~~-----~~~~vDav~LDm--------p~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 152 LGDVREGI-----DEEDVDAVFLDL--------PDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred eccccccc-----cccccCEEEEcC--------CChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 99998863 345999999543 67889999999999999999844443
No 127
>PHA03412 putative methyltransferase; Provisional
Probab=99.12 E-value=2.7e-10 Score=109.31 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~----G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+.+|||+|||+|.+++.+++. +..+|+|||+++.+++.|+++. .++.++.+|+...
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------------------~~~~~~~~D~~~~ 109 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------------------PEATWINADALTT 109 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------------------cCCEEEEcchhcc
Confidence 3679999999999999998875 2348999999999999999764 3578899998765
Q ss_pred ccccCCCCCceeEEEeccccccccCh---------hhHHHHHHHHhccccCCcEEeccCc
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYE---------SMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~---------~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
. + ..+||+|||++...-+... .....++..+.++++||+.|+|...
T Consensus 110 ~----~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 110 E----F-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred c----c-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 2 2 4689999999754322111 1245678888889999998887654
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.11 E-value=5.4e-10 Score=103.23 Aligned_cols=109 Identities=18% Similarity=0.247 Sum_probs=80.4
Q ss_pred HHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 288 ~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.+.....+.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++... ++++++++
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~----------------~~v~ii~~ 66 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA----------------DNLTVIHG 66 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC----------------CCEEEEEC
Confidence 45555666788899999999999999999985 49999999999999998886431 47999999
Q ss_pred chhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
|+.++. ++..+||+|+++.. |.+ ....+..++.. ..+.++|.+++.
T Consensus 67 D~~~~~----~~~~~~d~vi~n~P-y~~-~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 67 DALKFD----LPKLQPYKVVGNLP-YNI-STPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred chhcCC----ccccCCCEEEECCC-ccc-HHHHHHHHHhc--CCCcceEEEEEE
Confidence 999874 45557999998853 322 12333444432 224578887744
No 129
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.11 E-value=5.6e-10 Score=113.57 Aligned_cols=121 Identities=19% Similarity=0.189 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc--cc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL--GE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l--~~ 374 (497)
++.+|||+|||-|.-...+.+++...++|+|++...++.|+++.+...-.. ... .....-...++.+|.... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~--~~~--~~~~~f~a~f~~~D~f~~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRN--NSK--QYRFDFIAEFIAADCFSESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTST--T-H--TSEECCEEEEEESTTCCSHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccc--ccc--cccccchhheeccccccchhhh
Confidence 789999999999999999999999999999999999999999983211000 000 000011456788876432 21
Q ss_pred ccCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 375 SMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++....+||+|-|-. |+|++..+.....+|..+.+.|+|||+++..
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1222235999999865 7888888999999999999999999999933
No 130
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=9.4e-10 Score=100.93 Aligned_cols=90 Identities=30% Similarity=0.349 Sum_probs=73.2
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
....|++|+|+|||||++++.++-.|+.+|+|||+++.+++.|++++.+.+ .+|.++.+|+.++
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---------------g~v~f~~~dv~~~- 105 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---------------GDVEFVVADVSDF- 105 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---------------CceEEEEcchhhc-
Confidence 446789999999999999999999999999999999999999999998843 5899999999886
Q ss_pred cccCCCCCceeEEEeccc-cccccChhhHHHHHH
Q 010913 374 ESMQIQPHSVDVLVSEWM-GYCLLYESMLSSVLF 406 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~-~~~l~~~~~l~~vL~ 406 (497)
...+|.++.++. |....| ++..-+..
T Consensus 106 ------~~~~dtvimNPPFG~~~rh-aDr~Fl~~ 132 (198)
T COG2263 106 ------RGKFDTVIMNPPFGSQRRH-ADRPFLLK 132 (198)
T ss_pred ------CCccceEEECCCCcccccc-CCHHHHHH
Confidence 357889998874 333333 55554433
No 131
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.09 E-value=3.4e-10 Score=106.92 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||||||+|.++..+++.+...++|+|+|+.+++.|++. +++++.+++.+..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~---------------------~~~~~~~d~~~~l-- 68 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR---------------------GVNVIQGDLDEGL-- 68 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc---------------------CCeEEEEEhhhcc--
Confidence 46789999999999999999876444899999999999877532 3578888886521
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
.++++++||+|++.. ++.+..++..++.++.|.++++.+.
T Consensus 69 ~~~~~~sfD~Vi~~~---~l~~~~d~~~~l~e~~r~~~~~ii~ 108 (194)
T TIGR02081 69 EAFPDKSFDYVILSQ---TLQATRNPEEILDEMLRVGRHAIVS 108 (194)
T ss_pred cccCCCCcCEEEEhh---HhHcCcCHHHHHHHHHHhCCeEEEE
Confidence 025678999999765 5666678888999988887765333
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.09 E-value=2.9e-10 Score=108.42 Aligned_cols=108 Identities=27% Similarity=0.342 Sum_probs=80.6
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
....+++.+.+.+|.+|||||||+|..+..++.. |. .+|++||..+..++.|++++...++ .+|
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--------------~nv 125 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--------------DNV 125 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--------------HSE
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--------------Cce
Confidence 4445666677899999999999999999999988 54 3799999999999999999998887 589
Q ss_pred EEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.++.+|..... ....+||.|++.. ... ..+. .+.+.||+||+|+
T Consensus 126 ~~~~gdg~~g~----~~~apfD~I~v~~---a~~--~ip~----~l~~qL~~gGrLV 169 (209)
T PF01135_consen 126 EVVVGDGSEGW----PEEAPFDRIIVTA---AVP--EIPE----ALLEQLKPGGRLV 169 (209)
T ss_dssp EEEES-GGGTT----GGG-SEEEEEESS---BBS--S--H----HHHHTEEEEEEEE
T ss_pred eEEEcchhhcc----ccCCCcCEEEEee---ccc--hHHH----HHHHhcCCCcEEE
Confidence 99999987642 2356899999654 332 2222 2456799999998
No 133
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.08 E-value=7.9e-10 Score=112.39 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.+++.+++.|. +|+|+|+|+.+++.|+++++.+++ .+++++++|+.++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l--------------~~v~~~~~D~~~~~-- 234 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGL--------------TNVQFQALDSTQFA-- 234 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCC--------------CceEEEEcCHHHHH--
Confidence 3578999999999999999999875 999999999999999999999987 47999999998863
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
....++||+|++++.-.. ....++..+ .-++|+++++.
T Consensus 235 -~~~~~~~D~Vv~dPPr~G-----~~~~~~~~l-~~~~~~~ivyv 272 (315)
T PRK03522 235 -TAQGEVPDLVLVNPPRRG-----IGKELCDYL-SQMAPRFILYS 272 (315)
T ss_pred -HhcCCCCeEEEECCCCCC-----ccHHHHHHH-HHcCCCeEEEE
Confidence 112357999998864221 122333333 33678877763
No 134
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.08 E-value=3.7e-10 Score=114.27 Aligned_cols=145 Identities=30% Similarity=0.367 Sum_probs=121.5
Q ss_pred HHhhhcchhhhHHHHHHHHhCCCCCC-----C-CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCC
Q 010913 272 HREMISDKVRTDSYRQAILENPSLMK-----G-AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345 (497)
Q Consensus 272 h~~ml~d~~r~~~y~~~i~~~~~~~~-----~-~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl 345 (497)
...|+.|..|...|+..|.....-.+ | .-|||||.|||.+|+.++++|+..|+|++.-..|.+.|+++..+||+
T Consensus 35 y~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 35 YLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred HHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence 45799999999999999877543222 2 35899999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 346 WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 346 ~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+ ++|++|.....++. ..+....|+++.+.+.--|..+..++++=.+..++++||...+|.+++.
T Consensus 115 S-------------dkI~vInkrStev~---vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratv 178 (636)
T KOG1501|consen 115 S-------------DKINVINKRSTEVK---VGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATV 178 (636)
T ss_pred c-------------cceeeeccccceee---ecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceE
Confidence 4 79999998877775 1234568999887665566677778888888899999999999999999
Q ss_pred EEeeecC
Q 010913 426 FVAGFGR 432 (497)
Q Consensus 426 ~~~~~~~ 432 (497)
|...+..
T Consensus 179 Y~qlVES 185 (636)
T KOG1501|consen 179 YCQLVES 185 (636)
T ss_pred EEEEehh
Confidence 9988754
No 135
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.07 E-value=5.8e-10 Score=110.80 Aligned_cols=116 Identities=24% Similarity=0.287 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|++|||+-|-||.+|+.+++.||.+|++||.|..+++.|++++..||+. .++++++.+|+.+.-..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~------------~~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD------------LDRHRFIQGDVFKFLKR 189 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C------------CTCEEEEES-HHHHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------ccceEEEecCHHHHHHH
Confidence 468999999999999999999999999999999999999999999999973 25899999999875321
Q ss_pred cCCCCCceeEEEeccccccccC---hhhHHHHHHHHhccccCCcEEeccCce
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLY---ESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~---~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
+. ..++||+||+.++.+.-.. ..+...++..+.++|+|||.|+..+|+
T Consensus 190 ~~-~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 190 LK-KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp HH-HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred Hh-cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 11 2468999999886543211 235567888899999999999866663
No 136
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=7.2e-10 Score=104.16 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=86.0
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
....+++.+.+.++.+||+||||+|..+..+|+... +|++||..+...+.|++++...|+ .+|.+
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~--------------~nV~v 124 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGY--------------ENVTV 124 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCC--------------CceEE
Confidence 344466677889999999999999999999999944 999999999999999999999998 57999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++||...-. -+..+||.|+... .. ...+..+ ...|||||+++.
T Consensus 125 ~~gDG~~G~----~~~aPyD~I~Vta---aa--~~vP~~L----l~QL~~gGrlv~ 167 (209)
T COG2518 125 RHGDGSKGW----PEEAPYDRIIVTA---AA--PEVPEAL----LDQLKPGGRLVI 167 (209)
T ss_pred EECCcccCC----CCCCCcCEEEEee---cc--CCCCHHH----HHhcccCCEEEE
Confidence 999987652 2347899999653 21 1122333 467999999983
No 137
>PTZ00146 fibrillarin; Provisional
Probab=99.07 E-value=8.7e-10 Score=109.23 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=81.5
Q ss_pred HHHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 284 ~y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+..+|+. ++.+.++.+|||+|||+|.++..+++. | ...|+|||+++.+.+...+.++..
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------------- 180 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------------- 180 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---------------
Confidence 34445533 345788999999999999999999988 4 358999999998665554443321
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+|.++.+|+.... ....+..+||+|++... .......++.++.++|||||.+++
T Consensus 181 -~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 181 -PNIVPIIEDARYPQ-KYRMLVPMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred -CCCEEEECCccChh-hhhcccCCCCEEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 36888888886421 01223458999997641 223445666789999999999985
No 138
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.07 E-value=4.3e-10 Score=104.10 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
+.+|.+|||+|||.|.+...|.+. ++ .++|||+++..+..+.++ .+.++++|+++--
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~~v~~cv~r---------------------Gv~Viq~Dld~gL 68 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPDNVAACVAR---------------------GVSVIQGDLDEGL 68 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCC-eEEEEecCHHHHHHHHHc---------------------CCCEEECCHHHhH
Confidence 478999999999999999988886 55 999999999887665543 4678999997642
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccC
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKP 414 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkp 414 (497)
..+++++||.|| ++..|.....+..+|.++.|+-|.
T Consensus 69 --~~f~d~sFD~VI---lsqtLQ~~~~P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 69 --ADFPDQSFDYVI---LSQTLQAVRRPDEVLEEMLRVGRR 104 (193)
T ss_pred --hhCCCCCccEEe---hHhHHHhHhHHHHHHHHHHHhcCe
Confidence 148899999999 666888888899999988766443
No 139
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.07 E-value=3.8e-11 Score=112.43 Aligned_cols=115 Identities=23% Similarity=0.323 Sum_probs=86.9
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
...++......+-.++||+|||||..+..+..+ +.+.+|||+|.+|+++|.++ |+. -++.
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~Y---------------D~L~ 173 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLY---------------DTLY 173 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cch---------------HHHH
Confidence 333444444444689999999999999988777 45999999999999988765 321 2455
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
++++..+.. ...+..||+|++. .++.+...+..++..+...|+|||.+.++.-+.
T Consensus 174 ~Aea~~Fl~--~~~~er~DLi~Aa---DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 174 VAEAVLFLE--DLTQERFDLIVAA---DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHHHHHHhh--hccCCcccchhhh---hHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 666654431 1457899999954 478888999999999999999999999776544
No 140
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.07 E-value=6.2e-10 Score=104.58 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=73.2
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
...+.+|.+|||+|||+|.++..+++. +..+|+|+|+|+.+ .. .++.++++|+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~--------------~~i~~~~~d~ 81 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI--------------ENVDFIRGDF 81 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC--------------CCceEEEeeC
Confidence 445578999999999999999988876 34589999999853 11 3577888887
Q ss_pred hhccc--c--cCCCCCceeEEEeccccc-----cccCh---hhHHHHHHHHhccccCCcEEec
Q 010913 370 EELGE--S--MQIQPHSVDVLVSEWMGY-----CLLYE---SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 370 ~~l~~--~--l~~~~~~fDvIvs~~~~~-----~l~~~---~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.+... . ..++.++||+|++....+ .+.+. .+...++..+.++|+|||.+++
T Consensus 82 ~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 82 TDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 65310 0 013466899999854211 11111 2346889999999999999984
No 141
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.06 E-value=9e-10 Score=102.77 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++.-|||||||+|..+..+...|. ..+|||+|+.|++.|.+.--. -.++.+|+-+- +
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e-------------------gdlil~DMG~G---l 106 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE-------------------GDLILCDMGEG---L 106 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-------------------cCeeeeecCCC---C
Confidence 578999999999999999988896 999999999999999874211 24566666543 5
Q ss_pred CCCCCceeEEEeccccccccC--------hhhHHHHHHHHhccccCCcEEecc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLY--------ESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~--------~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
||++++||.+||......|.+ ...+..++..++.+|++|+..++.
T Consensus 107 pfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 899999999998532222211 233567788899999999998744
No 142
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.06 E-value=1.1e-09 Score=116.17 Aligned_cols=117 Identities=23% Similarity=0.239 Sum_probs=86.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.+.....+.++.+|||+|||+|.+++.+|+.+ .+|+|+|+++.+++.|++++..+++ .+++
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~--------------~nv~ 343 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI--------------ANVE 343 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC--------------CceE
Confidence 344445555556677899999999999999999875 4999999999999999999999987 5899
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++.+|+.+....++....+||+|+..+.-.. ....++..+.+ |+|+|+++.+
T Consensus 344 ~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 344 FLAGTLETVLPKQPWAGQIPDVLLLDPPRKG-----CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred EEeCCHHHHHHHHHhcCCCCCEEEECcCCCC-----CCHHHHHHHHh-cCCCEEEEEc
Confidence 9999998742112233467999997763221 12445555443 8899887643
No 143
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.06 E-value=4.1e-10 Score=110.46 Aligned_cols=130 Identities=20% Similarity=0.258 Sum_probs=97.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.|.+.++-+.-..++..++++|||-|+-.+.+-++|++.++|+|+++..|+.|+++.+...-. .+ .+.=.+.
T Consensus 104 NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r----~~----~~~f~a~ 175 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNR----FK----KFIFTAV 175 (389)
T ss_pred HHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhh----hh----cccceeE
Confidence 344444444445788999999999999999999999999999999999999999987642110 00 0011467
Q ss_pred EEecchh--hcccccCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 364 VVQGMVE--ELGESMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 364 ~i~gd~~--~l~~~l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
|+.+|.. .+...++++..+||+|-|.. |+|++..++....+|..+.++|+|||++|-.
T Consensus 176 f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 176 FIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred EEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 8888753 33333444555699999864 7888888899999999999999999999933
No 144
>PHA03411 putative methyltransferase; Provisional
Probab=99.05 E-value=9.8e-10 Score=107.77 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+.+|||+|||+|.+++.++++ +..+|+|+|+++.+++.|+++. .++.++++|+.++.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------------------~~v~~v~~D~~e~~-- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------------------PEAEWITSDVFEFE-- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------------------cCCEEEECchhhhc--
Confidence 4579999999999999988876 3459999999999999988753 36789999998762
Q ss_pred cCCCCCceeEEEeccccccccChh--h---------------HHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYES--M---------------LSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~--~---------------l~~vL~~~~r~LkpgG~li 419 (497)
...+||+|++++..+.+.... . +..++.....+|+|+|.++
T Consensus 123 ---~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 123 ---SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred ---ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 356899999987543322210 0 3456677788889998765
No 145
>PLN02476 O-methyltransferase
Probab=99.04 E-value=1.8e-09 Score=106.86 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..++++|||||+|+|..++.+|+. + .++|+++|.++..++.|+++++..|+ .++|+++.|++.+.
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-------------~~~I~li~GdA~e~ 182 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-------------SHKVNVKHGLAAES 182 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEEcCHHHH
Confidence 456799999999999999999986 3 35899999999999999999999998 35899999998775
Q ss_pred ccccC--CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 373 GESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 373 ~~~l~--~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
-..+. ...++||+|+... ........+..+.++|+|||+|+.+..
T Consensus 183 L~~l~~~~~~~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHhcccCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 21110 1136899999543 235567788888999999999997654
No 146
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.03 E-value=9.2e-10 Score=105.75 Aligned_cols=119 Identities=25% Similarity=0.264 Sum_probs=85.6
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCC-CCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWD-RPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~-~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
....++.+||..|||.|.-...||+.|. +|+|||+|+.+++.|.+. +++... ...........++|++++||+.+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e---~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~ 108 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEE---NNLEPTVTSVGGFKRYQAGRITIYCGDFFE 108 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHH---CTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHH---hccCCCcccccceeeecCCceEEEEccccc
Confidence 3456788999999999999999999998 999999999998877432 222100 00111111234679999999999
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. +-..++||+|+=.. ..|-+++.+.......+.++|+|||.++
T Consensus 109 l~---~~~~g~fD~iyDr~-~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 109 LP---PEDVGKFDLIYDRT-FLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp GG---GSCHHSEEEEEECS-STTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred CC---hhhcCCceEEEEec-ccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 85 22335799999654 3355678899999999999999999955
No 147
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=1.8e-09 Score=102.21 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCC-CCCCCC--------------------
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDND-FWWDRP-------------------- 350 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~g-l~~~~~-------------------- 350 (497)
...+.++.+|||||..|.+++.+|+. |+..|+|+|+++..|+.|++.++..- ....+.
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 34577899999999999999999998 88999999999999999999876321 000001
Q ss_pred CCCCCCCCCCceEEEecchhhc-ccccCCCCCceeEEEeccc--cccc-cChhhHHHHHHHHhccccCCcEEe
Q 010913 351 QSEGNINNAGKMEVVQGMVEEL-GESMQIQPHSVDVLVSEWM--GYCL-LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 351 ~~~~~~~~~~~i~~i~gd~~~l-~~~l~~~~~~fDvIvs~~~--~~~l-~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.......++++.+...+..-. ++-+.+....||+|+|..+ -.+| .+...+..++..+.++|.|||+|+
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 0011122223333332221110 0011245678999998431 1122 234568899999999999999998
No 148
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.02 E-value=6.1e-10 Score=104.13 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+|||+-||||.+++.++.+||++|+.||.++..+...+++++..++. +++.++.+|+...-..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-------------~~~~v~~~d~~~~l~~ 107 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-------------DKIRVIKGDAFKFLLK 107 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-------------GGEEEEESSHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-------------cceeeeccCHHHHHHh
Confidence 578999999999999999999999999999999999999999999988873 4689999997554211
Q ss_pred cCCCCCceeEEEeccccccccChhh-HHHHHHHHh--ccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESM-LSSVLFARD--QWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~-l~~vL~~~~--r~LkpgG~li~~~ 422 (497)
......+||+|+..++ |.. .. ...++..+. .+|+++|+++..+
T Consensus 108 ~~~~~~~fDiIflDPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 108 LAKKGEKFDIIFLDPP-YAK---GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHCTS-EEEEEE--S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hcccCCCceEEEECCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 1124689999998863 221 12 355666665 8999999998554
No 149
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.01 E-value=1.2e-09 Score=101.49 Aligned_cols=112 Identities=28% Similarity=0.426 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
....++++||++|||+|..++.+++. |..+|+..|.++ .+..++.+++.|+. ....++.+...+..+
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-----------~~~~~v~v~~L~Wg~ 108 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-----------LLDGRVSVRPLDWGD 108 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-------------------EEEE--TTS
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-----------cccccccCcEEEecC
Confidence 34578999999999999999999999 777999999999 99999999998861 013567777765432
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-.....+...+||+|++.- ++........++..+.++|+|+|.++
T Consensus 109 ~~~~~~~~~~~~D~IlasD---v~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 109 ELDSDLLEPHSFDVILASD---VLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp -HHHHHHS-SSBSEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred cccccccccccCCEEEEec---ccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 1000013456899999544 66677888999999999999999865
No 150
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=6.8e-10 Score=105.13 Aligned_cols=151 Identities=17% Similarity=0.260 Sum_probs=97.9
Q ss_pred EEEEEcCCCCHhHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 300 VVMDIGCGTGILSLFAAQAGA---SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~---~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+||+||||.|.....+.+-.. -+|++.|.|+.+++..+++...+ ..++.....|+..-....
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~---------------e~~~~afv~Dlt~~~~~~ 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD---------------ESRVEAFVWDLTSPSLKE 138 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc---------------hhhhcccceeccchhccC
Confidence 899999999999998888622 38999999999988777664332 134544444544333234
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEee---ecCCCCCC--Ccc-----ccccCc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAG---FGRGGTSL--PFW-----ENVYGF 446 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~---~~~~~~~~--~fw-----~~v~g~ 446 (497)
+...+++|+|++......+ +......++..+.++|||||.|++.....+-.. |.++ ..+ .|+ ..+|-|
T Consensus 139 ~~~~~svD~it~IFvLSAi-~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~-~~i~~nfYVRgDGT~~YfF 216 (264)
T KOG2361|consen 139 PPEEGSVDIITLIFVLSAI-HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKG-QCISENFYVRGDGTRAYFF 216 (264)
T ss_pred CCCcCccceEEEEEEEecc-ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCC-ceeecceEEccCCceeeec
Confidence 5678999999954322222 345667899999999999999996543222111 1111 001 111 134667
Q ss_pred cccccchHHHhhhcCCCeEee
Q 010913 447 TMSCVGREVVQDAAGIPIVDV 467 (497)
Q Consensus 447 ~~~~~~~~~~~~~~~~p~v~~ 467 (497)
++..+...+..++|.....++
T Consensus 217 ~~eeL~~~f~~agf~~~~~~~ 237 (264)
T KOG2361|consen 217 TEEELDELFTKAGFEEVQLEV 237 (264)
T ss_pred cHHHHHHHHHhcccchhcccc
Confidence 888888888888876544443
No 151
>PRK01581 speE spermidine synthase; Validated
Probab=99.00 E-value=2.5e-09 Score=108.74 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
..+++||+||||+|..+..+++. +..+|++||+++.+++.|++...-..+ .......++++++.+|+.++-
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~-------~~~~~~DpRV~vvi~Da~~fL- 220 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSL-------NKSAFFDNRVNVHVCDAKEFL- 220 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchh-------ccccCCCCceEEEECcHHHHH-
Confidence 45689999999999999999988 457999999999999999962110000 000112478999999998863
Q ss_pred ccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEeccCc
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
....++||+|++........... .-..++..+.+.|+|||+++....
T Consensus 221 --~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 221 --SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred --HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 23457899999874211110011 125688899999999999985543
No 152
>PLN02366 spermidine synthase
Probab=99.00 E-value=4.2e-09 Score=106.26 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++++||+||||.|.++..++++ +..+|+.||+++.+++.|++.+...+. ....++++++.+|+..+-.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~----------~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV----------GFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc----------ccCCCceEEEEChHHHHHh
Confidence 45789999999999999999998 457999999999999999998754210 0123689999999876521
Q ss_pred ccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEeccCcee
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
..+.++||+|++....... ... .-..++..+.+.|+|||+++....+.
T Consensus 160 --~~~~~~yDvIi~D~~dp~~-~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~ 209 (308)
T PLN02366 160 --NAPEGTYDAIIVDSSDPVG-PAQELFEKPFFESVARALRPGGVVCTQAESM 209 (308)
T ss_pred --hccCCCCCEEEEcCCCCCC-chhhhhHHHHHHHHHHhcCCCcEEEECcCCc
Confidence 1235689999986422111 111 12468889999999999998655443
No 153
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.98 E-value=3.1e-09 Score=110.54 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.++.+|||+|||+|.+++.++..|. +|+|||+++.+++.|+++++.+++ ++++++.+|+.++.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~--------------~~~~~~~~d~~~~~-- 294 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGL--------------DNLSFAALDSAKFA-- 294 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEECCHHHHH--
Confidence 4568999999999999999998774 999999999999999999999987 47999999998763
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+....+||+|+.+++-. .....++..+. .++|+++++.+
T Consensus 295 -~~~~~~~D~vi~DPPr~-----G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 295 -TAQMSAPELVLVNPPRR-----GIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred -HhcCCCCCEEEECCCCC-----CCcHHHHHHHH-hcCCCeEEEEE
Confidence 11124699999887522 22234555554 37999888744
No 154
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.98 E-value=4.9e-09 Score=100.78 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCC-CCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQ-SEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~-~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..++.+||..|||.|.-+..||..|. +|+|||+|+.+++.+.+ .+++...... .........+|+++++|+.++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS---QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH---HcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 34678999999999999999999999 79999999999887654 2333210000 0011112357999999999874
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.. +-..++||+|+-.. ..+-++..+.......+.++|+|||.++.
T Consensus 117 ~~-~~~~~~fD~VyDra-~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 117 KI-ANNLPVFDIWYDRG-AYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cc-ccccCCcCeeeeeh-hHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 10 01236899988653 33455778889999999999999999873
No 155
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.97 E-value=1.3e-09 Score=103.57 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++++||+||||+|..++.+|++ + .++|+.+|+++..++.|++.++..|+ .++|+++.|++.+.-
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-------------~~~I~~~~gda~~~l 110 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-------------DDRIEVIEGDALEVL 110 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-------------GGGEEEEES-HHHHH
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-------------CCcEEEEEeccHhhH
Confidence 46789999999999999999987 3 35999999999999999999999998 369999999997753
Q ss_pred cccC--CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 374 ESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 374 ~~l~--~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
..+. .+.++||+|+... ........+..+.++|+|||+++.+..-.
T Consensus 111 ~~l~~~~~~~~fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 111 PELANDGEEGQFDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp HHHHHTTTTTSEEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred HHHHhccCCCceeEEEEcc------cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 2111 1245899999543 23455667777889999999999665533
No 156
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=1e-08 Score=94.85 Aligned_cols=126 Identities=25% Similarity=0.279 Sum_probs=93.8
Q ss_pred hHHHHHHHHhCCCC--CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSL--MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 282 ~~~y~~~i~~~~~~--~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
++..+..+...+.. ..|.++||+-+|+|.+++.++.+|+.+|+.||.+...+...+++++..++ .
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-------------~ 92 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-------------E 92 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-------------c
Confidence 34555666665543 78999999999999999999999999999999999999999999998886 3
Q ss_pred CceEEEecchhhcccccCCCCC--ceeEEEeccccccccChhhHHHHHHH--HhccccCCcEEeccCcee
Q 010913 360 GKMEVVQGMVEELGESMQIQPH--SVDVLVSEWMGYCLLYESMLSSVLFA--RDQWLKPGGAILPDTATM 425 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~--~fDvIvs~~~~~~l~~~~~l~~vL~~--~~r~LkpgG~li~~~~~~ 425 (497)
.+..++..|+...- +.... +||+|+..+.... ........+.. -..+|+|+|.+++....-
T Consensus 93 ~~~~~~~~da~~~L---~~~~~~~~FDlVflDPPy~~--~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 93 GEARVLRNDALRAL---KQLGTREPFDLVFLDPPYAK--GLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred cceEEEeecHHHHH---HhcCCCCcccEEEeCCCCcc--chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 68899999988552 12223 4999998874321 11111222333 568999999999665543
No 157
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.96 E-value=3.2e-09 Score=103.39 Aligned_cols=110 Identities=24% Similarity=0.240 Sum_probs=85.9
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..|+..+.+.||.+||+.|.|+|.++..++++ +.++|+..|..+..++.|+++++..|+ .++|++
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-------------~~~v~~ 96 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-------------DDNVTV 96 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-------------CTTEEE
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-------------CCCcee
Confidence 34677788999999999999999999999997 447999999999999999999999998 368999
Q ss_pred EecchhhcccccCCC---CCceeEEEeccccccccChhhHHHHHHHHhccc-cCCcEEecc
Q 010913 365 VQGMVEELGESMQIQ---PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL-KPGGAILPD 421 (497)
Q Consensus 365 i~gd~~~l~~~l~~~---~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~L-kpgG~li~~ 421 (497)
.++|+..-. +. ...+|.|+... +.+..++..+.+.| ||||.+..-
T Consensus 97 ~~~Dv~~~g----~~~~~~~~~DavfLDl--------p~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 97 HHRDVCEEG----FDEELESDFDAVFLDL--------PDPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp EES-GGCG------STT-TTSEEEEEEES--------SSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred Eecceeccc----ccccccCcccEEEEeC--------CCHHHHHHHHHHHHhcCCceEEEE
Confidence 999997532 32 36799999543 45566888889999 999998843
No 158
>PLN02672 methionine S-methyltransferase
Probab=98.96 E-value=3.6e-09 Score=121.03 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=92.2
Q ss_pred hhhhHHHHHHHHhCCC-CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCC-CCC-CC
Q 010913 279 KVRTDSYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDR-PQS-EG 354 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~-~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~-~~~-~~ 354 (497)
+..++.+.+.+...+. .+++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.|++.... ... ..
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 3445555555322221 235679999999999999999987 4469999999999999999999988652000 000 00
Q ss_pred CCCCCCceEEEecchhhcccccCCCCCceeEEEecccccccc------------Ch------------------------
Q 010913 355 NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL------------YE------------------------ 398 (497)
Q Consensus 355 ~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~------------~~------------------------ 398 (497)
+....++|+++++|+.+.. .....+||+|||++. |... ++
T Consensus 179 ~~~l~~rV~f~~sDl~~~~---~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL 254 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYC---RDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGL 254 (1082)
T ss_pred cccccccEEEEECchhhhc---cccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHH
Confidence 0011247999999987642 111236999999863 2110 11
Q ss_pred hhHHHHHHHHhccccCCcEEeccCc
Q 010913 399 SMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 399 ~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.....++....++|+|||.+++...
T Consensus 255 ~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 255 GLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEC
Confidence 0124667778899999999985543
No 159
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.95 E-value=7.6e-09 Score=102.91 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+++||+||||+|.++..+++.+ ..+|+++|+++.+++.|++.+...+. .....+++++.+|+..+-
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~----------~~~~~~v~i~~~D~~~~l-- 139 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG----------SYDDPRVDLQIDDGFKFL-- 139 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc----------cccCCceEEEECchHHHH--
Confidence 45699999999999999988884 67999999999999999988754321 011257889999887652
Q ss_pred cCCCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccCcee
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
....++||+|++..... ...... ...++..+.+.|+|||+++....+.
T Consensus 140 -~~~~~~yDvIi~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 140 -ADTENTFDVIIVDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred -HhCCCCccEEEEeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 22357899999864211 111111 3578889999999999999765543
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.95 E-value=5.3e-09 Score=99.68 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=88.8
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe-cchh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ-GMVE 370 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~-gd~~ 370 (497)
...++++||+||.+.|..++.+|.. + ..+++.+|.++.+++.|++++++.|+. ++|.++. ||..
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-------------~~i~~~~~gdal 122 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-------------DRIELLLGGDAL 122 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-------------ceEEEEecCcHH
Confidence 3457899999999999999999987 4 469999999999999999999999984 5688888 5876
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.-.. ...++||+|+... .....+.++..+.++|+|||+++.+..
T Consensus 123 ~~l~~--~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 123 DVLSR--LLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHHh--ccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 65321 3468999999532 334557788889999999999996654
No 161
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=9.8e-09 Score=98.85 Aligned_cols=127 Identities=24% Similarity=0.389 Sum_probs=89.3
Q ss_pred hHHHHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNIN 357 (497)
Q Consensus 282 ~~~y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~ 357 (497)
|+.+.+.+.. +....++..+||+|||+|.+++.++.. +..+|+|||.|+.++..|.+++..+++.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~----------- 198 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS----------- 198 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-----------
Confidence 4444444432 333456679999999999999998876 7779999999999999999999999983
Q ss_pred CCCceEEEecchhhc-ccccCCCCCceeEEEecccccccc------------Ch------------hhHHHHHHHHhccc
Q 010913 358 NAGKMEVVQGMVEEL-GESMQIQPHSVDVLVSEWMGYCLL------------YE------------SMLSSVLFARDQWL 412 (497)
Q Consensus 358 ~~~~i~~i~gd~~~l-~~~l~~~~~~fDvIvs~~~~~~l~------------~~------------~~l~~vL~~~~r~L 412 (497)
+++.+++-+++.- ....+...+++|+++|++. |... |+ ..+-.++.-+.|.|
T Consensus 199 --g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 199 --GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred --CceEEEecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 6888886544321 1112355789999999963 2211 11 11234455578999
Q ss_pred cCCcEEeccC
Q 010913 413 KPGGAILPDT 422 (497)
Q Consensus 413 kpgG~li~~~ 422 (497)
+|||.+.+..
T Consensus 276 q~gg~~~le~ 285 (328)
T KOG2904|consen 276 QPGGFEQLEL 285 (328)
T ss_pred ccCCeEEEEe
Confidence 9999988543
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.93 E-value=5.2e-09 Score=105.14 Aligned_cols=120 Identities=25% Similarity=0.344 Sum_probs=98.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+++.+.....+|..|||--||||.+.+.+.-.|+ +|+|.|++..|+.-|+.|++..++ ....
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i--------------~~~~ 248 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI--------------EDYP 248 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc--------------Ccee
Confidence 4667788888889999999999999999999999999 999999999999999999998886 3455
Q ss_pred EEec-chhhcccccCCCCCceeEEEeccccccccC-------hhhHHHHHHHHhccccCCcEEeccCc
Q 010913 364 VVQG-MVEELGESMQIQPHSVDVLVSEWMGYCLLY-------ESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 364 ~i~g-d~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-------~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+..+ |+..+ |++..+||.|++.+ .|.... ......+|..+.++|++||++++..+
T Consensus 249 ~~~~~Da~~l----pl~~~~vdaIatDP-PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 249 VLKVLDATNL----PLRDNSVDAIATDP-PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEEecccccC----CCCCCccceEEecC-CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5555 89887 57777899999985 232211 34467888999999999999884443
No 163
>PRK03612 spermidine synthase; Provisional
Probab=98.88 E-value=1.2e-08 Score=110.41 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.++++||+||||+|..+..+++.+. .+|++||+++.+++.|+++..-..+. ......++++++.+|+.+.-
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~-------~~~~~dprv~vi~~Da~~~l- 367 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALN-------GGALDDPRVTVVNDDAFNWL- 367 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhh-------ccccCCCceEEEEChHHHHH-
Confidence 4578999999999999999998854 79999999999999999842111110 00112368999999998753
Q ss_pred ccCCCCCceeEEEeccccccccChh--hHHHHHHHHhccccCCcEEeccCce
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYES--MLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~--~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
....++||+|+++.......... .-..+++.+.+.|||||+++....+
T Consensus 368 --~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 368 --RKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred --HhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 22357899999875221100000 1245788899999999999976543
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.84 E-value=1.4e-08 Score=99.17 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=87.5
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+.++||+||+++|..++.+|+. + ..+|+++|.++..++.|+++++..|+. ++|+++.|++.+
T Consensus 76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-------------~~I~~~~G~a~e 142 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-------------HKIDFREGPALP 142 (247)
T ss_pred HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-------------CceEEEeccHHH
Confidence 3456789999999999999999886 2 359999999999999999999999983 699999999877
Q ss_pred cccccCC---CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 372 LGESMQI---QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 372 l~~~l~~---~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
.-..+.- ..++||+|+... ........+..+.+.|+|||+|+.+..-+
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred HHHHHHhccccCCcccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 5311110 136899999543 23344567777789999999999765533
No 165
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.83 E-value=1.4e-08 Score=96.10 Aligned_cols=109 Identities=24% Similarity=0.329 Sum_probs=80.6
Q ss_pred EEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 300 VVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
.+||||||.|.+.+.+|+. +...++|||++...+..|.+++...++ .|+.++++|+..+-..+ +
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--------------~Nv~~~~~da~~~l~~~-~ 84 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL--------------KNVRFLRGDARELLRRL-F 84 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT--------------SSEEEEES-CTTHHHHH-S
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc--------------cceEEEEccHHHHHhhc-c
Confidence 8999999999999999988 557999999999999999999988887 69999999987742211 4
Q ss_pred CCCceeEEEeccccccc--cCh-h--hHHHHHHHHhccccCCcEEeccCc
Q 010913 379 QPHSVDVLVSEWMGYCL--LYE-S--MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l--~~~-~--~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+++++|.|+.....-.. .|. . .-..++..+.++|+|||.|.+.|.
T Consensus 85 ~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 85 PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 57899999854311100 000 0 125789999999999999975443
No 166
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.82 E-value=3.5e-08 Score=93.27 Aligned_cols=99 Identities=27% Similarity=0.304 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..+|.+|||+.||.|.+++.+|+. +++.|+|+|++|.+++.++++++.|++ .++|.++++|..++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-------------~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-------------ENRIEVINGDAREFL 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--------------TTTEEEEES-GGG--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-------------CCeEEEEcCCHHHhc
Confidence 468999999999999999999994 445899999999999999999999998 368999999999873
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
+...+|-|++..+... ..+|.++.+++++||++
T Consensus 166 -----~~~~~drvim~lp~~~-------~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 166 -----PEGKFDRVIMNLPESS-------LEFLDAALSLLKEGGII 198 (200)
T ss_dssp ------TT-EEEEEE--TSSG-------GGGHHHHHHHEEEEEEE
T ss_pred -----CccccCEEEECChHHH-------HHHHHHHHHHhcCCcEE
Confidence 3789999995543222 24677778899999986
No 167
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.79 E-value=4.3e-09 Score=99.80 Aligned_cols=98 Identities=21% Similarity=0.184 Sum_probs=70.1
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
.++|+|||+|..++.+|.. .++|+|+|+|+.|+++|++....... ....++...++.++. -.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~-------------~t~~~ms~~~~v~L~----g~ 97 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYC-------------HTPSTMSSDEMVDLL----GG 97 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccc-------------cCCcccccccccccc----CC
Confidence 8999999999888888888 56999999999999988876422111 012233333333332 24
Q ss_pred CCceeEEEeccccccccChhhHHHHHHHHhccccCCc-EEe
Q 010913 380 PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG-AIL 419 (497)
Q Consensus 380 ~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG-~li 419 (497)
++++|+|++.- |+++ =++..++..+.|+||+.| +++
T Consensus 98 e~SVDlI~~Aq---a~HW-Fdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 98 EESVDLITAAQ---AVHW-FDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred Ccceeeehhhh---hHHh-hchHHHHHHHHHHcCCCCCEEE
Confidence 88999999643 4433 378889999999998776 555
No 168
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.77 E-value=8.3e-09 Score=97.18 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=99.2
Q ss_pred hhhhHHHHHHHHhCC--CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENP--SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~--~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
..+++.+.+.+.+.. ...+|.+|||...|-|..++.++++||.+|+.|+.++..++.|.-+--..++.
T Consensus 114 t~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~---------- 183 (287)
T COG2521 114 TKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF---------- 183 (287)
T ss_pred ccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc----------
Confidence 344566666665543 34579999999999999999999999999999999999998877554333332
Q ss_pred CCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...|.++.||+.++-. .+++.+||+|+-.+.-+.+..+-.-..+..+++|+|||||.++
T Consensus 184 --~~~i~iilGD~~e~V~--~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 184 --EIAIKIILGDAYEVVK--DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred --ccccEEecccHHHHHh--cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 3468999999988753 4678899999988765555444445678899999999999997
No 169
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.76 E-value=4.4e-08 Score=96.82 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=70.7
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.|.....+.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++.. . ++++
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~--------------~~v~ 78 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--A--------------GNVE 78 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--C--------------CCEE
Confidence 5666677777778899999999999999999999965 899999999999999987643 1 4799
Q ss_pred EEecchhhcccccCCCCCceeEEEeccc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWM 391 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~ 391 (497)
++.+|+..+. + ..||+|+++..
T Consensus 79 ii~~D~~~~~----~--~~~d~Vv~NlP 100 (258)
T PRK14896 79 IIEGDALKVD----L--PEFNKVVSNLP 100 (258)
T ss_pred EEEeccccCC----c--hhceEEEEcCC
Confidence 9999998763 3 34899999854
No 170
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.74 E-value=9e-08 Score=101.73 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=90.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||++||.|.-|..+|.. +.+.|+|+|+++.-+..+++++.+.|+ .++.+...|...
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--------------~nv~v~~~D~~~ 175 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV--------------SNVALTHFDGRV 175 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CeEEEEeCchhh
Confidence 4578999999999999999888886 346899999999999999999999998 578888888877
Q ss_pred cccccCCCCCceeEEEec----cccccccChh---------------hHHHHHHHHhccccCCcEEeccCcee
Q 010913 372 LGESMQIQPHSVDVLVSE----WMGYCLLYES---------------MLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~----~~~~~l~~~~---------------~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+.. ..+..||.|+.. ..|.+-.++. ....+|..+.++|||||+|+-+||++
T Consensus 176 ~~~---~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 176 FGA---ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hhh---hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 642 234679999953 3332221211 12578888999999999999999985
No 171
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.74 E-value=4.4e-08 Score=101.84 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=80.9
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+.+|||++||+|.+++.+++. |+.+|+++|+++.+++.++++++.|++ .++.++++|+..+-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~--------------~~~~v~~~Da~~~l--- 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL--------------ENEKVFNKDANALL--- 120 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CceEEEhhhHHHHH---
Confidence 468999999999999999875 767999999999999999999999987 46789999998762
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.. ..+||+|+.++. .....++....+.++|||+++++
T Consensus 121 ~~-~~~fD~V~lDP~-------Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 121 HE-ERKFDVVDIDPF-------GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred hh-cCCCCEEEECCC-------CCcHHHHHHHHHHhcCCCEEEEE
Confidence 11 467999998763 22345777766778999999965
No 172
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.73 E-value=6.3e-08 Score=97.25 Aligned_cols=87 Identities=28% Similarity=0.345 Sum_probs=72.8
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.|.....+.++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++...++ .++++
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-------------~~~v~ 88 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-------------ASKLE 88 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-------------CCcEE
Confidence 4556677777778899999999999999999998865 899999999999999999877653 25899
Q ss_pred EEecchhhcccccCCCCCceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
++.+|+.... + ..||+|+++.
T Consensus 89 ii~~Dal~~~----~--~~~d~VvaNl 109 (294)
T PTZ00338 89 VIEGDALKTE----F--PYFDVCVANV 109 (294)
T ss_pred EEECCHhhhc----c--cccCEEEecC
Confidence 9999998763 2 3689999874
No 173
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.72 E-value=3e-08 Score=90.78 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=63.6
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHH
Q 010913 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSS 403 (497)
Q Consensus 324 ~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~ 403 (497)
+|+|+|+.|++.|+++.+..+.. ...+++++++|++++ |+++++||+|++ .+++.+..++..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-----------~~~~i~~~~~d~~~l----p~~~~~fD~v~~---~~~l~~~~d~~~ 62 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-----------CYKCIEWIEGDAIDL----PFDDCEFDAVTM---GYGLRNVVDRLR 62 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-----------CCCceEEEEechhhC----CCCCCCeeEEEe---cchhhcCCCHHH
Confidence 58999999999998776432210 014799999999987 578889999995 446777788999
Q ss_pred HHHHHhccccCCcEEec
Q 010913 404 VLFARDQWLKPGGAILP 420 (497)
Q Consensus 404 vL~~~~r~LkpgG~li~ 420 (497)
++.++.|+|||||.+++
T Consensus 63 ~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 63 AMKEMYRVLKPGSRVSI 79 (160)
T ss_pred HHHHHHHHcCcCeEEEE
Confidence 99999999999999973
No 174
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.71 E-value=1.3e-07 Score=88.24 Aligned_cols=119 Identities=26% Similarity=0.295 Sum_probs=85.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC-CE---------EEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA-SR---------VIAVEASEKMAAVATQIAKDNDFWWDRPQSE 353 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~-~~---------V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~ 353 (497)
.....|+......++.+|||--||+|.+.+.++..+. .. ++|+|+++.++..|++++...|+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-------- 86 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-------- 86 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--------
Confidence 5666777777778899999999999999999887733 23 88999999999999999999887
Q ss_pred CCCCCCCceEEEecchhhcccccCCCCCceeEEEeccc-cccccCh----hhHHHHHHHHhccccCCcEEe
Q 010913 354 GNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLYE----SMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 354 ~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~-~~~l~~~----~~l~~vL~~~~r~LkpgG~li 419 (497)
...|.+.++|+.++. +..+++|+||+++. |.-+... .....++..+.++|++...++
T Consensus 87 -----~~~i~~~~~D~~~l~----~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 87 -----EDYIDFIQWDARELP----LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp -----CGGEEEEE--GGGGG----GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred -----CCceEEEecchhhcc----cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 357999999999984 56789999999863 2112211 223466788899999954444
No 175
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.70 E-value=1e-07 Score=91.82 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=86.6
Q ss_pred CEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 299 AVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
.++||||||.|.+...+|+. +...++|||+....+..|.+.+.+.++ +|+.++++|+..+...+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--------------~Nlri~~~DA~~~l~~~- 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL--------------KNLRLLCGDAVEVLDYL- 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC--------------CcEEEEcCCHHHHHHhc-
Confidence 68999999999999999988 667999999999999999999999987 58999999998876433
Q ss_pred CCCCceeEEEeccccccccChhh--------HHHHHHHHhccccCCcEEeccCce
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESM--------LSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~--------l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
++++++|-|+... --.+... -..++..+.+.|+|||.|.+.|..
T Consensus 115 ~~~~sl~~I~i~F---PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 115 IPDGSLDKIYINF---PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCeeEEEEEC---CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 2455999998543 2111111 257889999999999999866543
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.69 E-value=6.6e-08 Score=96.30 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=67.3
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.++....+.++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++.. +++.+
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-----------------~~v~~ 91 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-----------------DNLTI 91 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-----------------CceEE
Confidence 345566666677889999999999999999999976 999999999999999876521 37999
Q ss_pred EecchhhcccccCCCCCceeEEEecc
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
+++|+.++. ++.-.++.||++.
T Consensus 92 i~~D~~~~~----~~~~~~~~vv~Nl 113 (272)
T PRK00274 92 IEGDALKVD----LSELQPLKVVANL 113 (272)
T ss_pred EEChhhcCC----HHHcCcceEEEeC
Confidence 999998864 3222258899885
No 177
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.68 E-value=1.5e-07 Score=97.58 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+.+|||++||+|.+++.+++. +.+|+|||.++.+++.|++++..+++ .+++++.+|+.++...+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~--------------~~v~~~~~d~~~~l~~~~ 271 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI--------------DNVQIIRMSAEEFTQAMN 271 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC--------------CcEEEEECCHHHHHHHHh
Confidence 357999999999999988876 55999999999999999999999987 589999999987531110
Q ss_pred C------------CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 378 I------------QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 378 ~------------~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
. ...+||+|+..+.- ......++..+.+ |+++++.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~D~v~lDPPR-----~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 272 GVREFNRLKGIDLKSYNFSTIFVDPPR-----AGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred hcccccccccccccCCCCCEEEECCCC-----CCCcHHHHHHHHc---cCCEEEEE
Confidence 0 01258999988742 1223445555544 67776643
No 178
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.68 E-value=1.2e-07 Score=95.97 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCceEEEe-cchhhcc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEVVQ-GMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~i~~i~-gd~~~l~ 373 (497)
++.+|||||||+|.+...++.. ...+++|+|+++.+++.|++++..| ++ .++|.++. .+...+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-------------~~~I~~~~~~~~~~i~ 180 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-------------NGAIRLRLQKDSKAIF 180 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-------------cCcEEEEEccchhhhh
Confidence 5689999999999776655544 3348999999999999999999999 77 35788764 3433332
Q ss_pred cccCCCCCceeEEEeccccc
Q 010913 374 ESMQIQPHSVDVLVSEWMGY 393 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~ 393 (497)
..+..+.++||+|+|++..+
T Consensus 181 ~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 181 KGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred hcccccCCceEEEEeCCCCc
Confidence 11112456899999998644
No 179
>PLN02823 spermine synthase
Probab=98.67 E-value=1.3e-07 Score=96.39 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+++||.||+|.|.++..+++. +..+|++||+++.+++.|++.+..++- ....++++++.+|+..+-
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~----------~~~dprv~v~~~Da~~~L-- 170 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE----------AFCDKRLELIINDARAEL-- 170 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc----------cccCCceEEEEChhHHHH--
Confidence 5679999999999999999887 567999999999999999988754320 012478999999998863
Q ss_pred cCCCCCceeEEEeccccccccChh---hHHHHHH-HHhccccCCcEEeccC
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYES---MLSSVLF-ARDQWLKPGGAILPDT 422 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~---~l~~vL~-~~~r~LkpgG~li~~~ 422 (497)
....++||+|+.......-.... .-..++. .+.+.|+|||+++...
T Consensus 171 -~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 171 -EKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred -hhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 23467899999763110000000 1235666 7899999999998543
No 180
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.66 E-value=1.6e-07 Score=96.93 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc-C
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM-Q 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l-~ 377 (497)
.+|||+|||+|.+++.+++.. .+|+|||+++.+++.|++++..+++ .++.++.+|+.++.... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~--------------~~v~~~~~d~~~~~~~~~~ 263 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI--------------DNVQIIRMSAEEFTQAMNG 263 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEEcCHHHHHHHHhh
Confidence 479999999999999888774 5999999999999999999999987 57999999998853210 0
Q ss_pred ---C---C-----CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 378 ---I---Q-----PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 378 ---~---~-----~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+ . ...||+|+..+.-. .....++..+.+ |+++++++
T Consensus 264 ~~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 264 VREFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred ccccccccccccccCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEEEE
Confidence 0 0 12489999877422 223445555544 77777743
No 181
>PRK04148 hypothetical protein; Provisional
Probab=98.66 E-value=2.5e-07 Score=81.38 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=71.6
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
+.++|..+....++.+|||||||+|. ++..|++.|. .|+|+|+++..++.|+++ .+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~---------------------~~~ 61 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL---------------------GLN 61 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---------------------CCe
Confidence 44556666655677899999999997 8999999898 999999999988777654 358
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
++.+|+.+.+. -.-..+|+|.|. .....+...+.++.+-+.-.
T Consensus 62 ~v~dDlf~p~~---~~y~~a~liysi------rpp~el~~~~~~la~~~~~~ 104 (134)
T PRK04148 62 AFVDDLFNPNL---EIYKNAKLIYSI------RPPRDLQPFILELAKKINVP 104 (134)
T ss_pred EEECcCCCCCH---HHHhcCCEEEEe------CCCHHHHHHHHHHHHHcCCC
Confidence 89999877641 114679999963 23344454555555555443
No 182
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.66 E-value=1.7e-07 Score=90.56 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~ 335 (497)
..++++|||+|||||.++..+++.|+.+|+|||+++.|+..
T Consensus 73 ~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 73 DVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 36889999999999999999999999999999999988764
No 183
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.64 E-value=1.4e-07 Score=89.08 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=79.6
Q ss_pred hhhhHHHHHHHHh-CC---CCCCCCEEEEEcCCCCH----hHHHHHHc---CC---CEEEEEeCCHHHHHHHHHHHHh--
Q 010913 279 KVRTDSYRQAILE-NP---SLMKGAVVMDIGCGTGI----LSLFAAQA---GA---SRVIAVEASEKMAAVATQIAKD-- 342 (497)
Q Consensus 279 ~~r~~~y~~~i~~-~~---~~~~~~~VLDvGCGtG~----ls~~la~~---G~---~~V~gvD~S~~~i~~A~~~~~~-- 342 (497)
+...+.+.+.++. .. ...+.-+|+..||+||- +++.+... .. -+|+|+|+|+.+++.|++-...
T Consensus 9 ~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~ 88 (196)
T PF01739_consen 9 PEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPER 88 (196)
T ss_dssp TTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGG
T ss_pred HHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHH
Confidence 3334455666652 22 22356799999999995 56666662 12 2899999999999999863311
Q ss_pred --CCC----------CCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhc
Q 010913 343 --NDF----------WWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQ 410 (497)
Q Consensus 343 --~gl----------~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r 410 (497)
.++ ......+.+......+|+|.+.++.+. +.+.+.||+|+|-.+... +.......++..+.+
T Consensus 89 ~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~----~~~~~~fD~I~CRNVlIY-F~~~~~~~vl~~l~~ 163 (196)
T PF01739_consen 89 SLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP----DPPFGRFDLIFCRNVLIY-FDPETQQRVLRRLHR 163 (196)
T ss_dssp GGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S----------EEEEEE-SSGGG-S-HHHHHHHHHHHGG
T ss_pred HHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC----CcccCCccEEEecCEEEE-eCHHHHHHHHHHHHH
Confidence 011 000012223344456789999998882 245789999999653222 345667899999999
Q ss_pred cccCCcEEeccCc
Q 010913 411 WLKPGGAILPDTA 423 (497)
Q Consensus 411 ~LkpgG~li~~~~ 423 (497)
.|+|||.|++...
T Consensus 164 ~L~pgG~L~lG~s 176 (196)
T PF01739_consen 164 SLKPGGYLFLGHS 176 (196)
T ss_dssp GEEEEEEEEE-TT
T ss_pred HcCCCCEEEEecC
Confidence 9999999995443
No 184
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.63 E-value=1.7e-07 Score=88.62 Aligned_cols=105 Identities=22% Similarity=0.174 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+..++||.|||-|+.|..+...-+.+|..||+.+..++.|++.+...+ ....++++..++++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~--------------~~v~~~~~~gLQ~f~--- 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN--------------PRVGEFYCVGLQDFT--- 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG--------------CCEEEEEES-GGG-----
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC--------------CCcceEEecCHhhcc---
Confidence 457999999999999987655557899999999999999997754311 135688888888884
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.++.+||+|++.|..-. +...++-.+|..+...|+|+|+|++
T Consensus 118 -P~~~~YDlIW~QW~lgh-LTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 118 -PEEGKYDLIWIQWCLGH-LTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp ---TT-EEEEEEES-GGG-S-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCCcEeEEEehHhhcc-CCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 23579999999884222 3456788999999999999999984
No 185
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=4.1e-07 Score=82.86 Aligned_cols=102 Identities=24% Similarity=0.365 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
....+|+||||+|..+-++++. |.....++|+++.+++..++-++.|+. ++..++.|+..-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---------------~~~~V~tdl~~~-- 105 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---------------HIDVVRTDLLSG-- 105 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---------------ccceeehhHHhh--
Confidence 3689999999999999999988 456899999999999988888888875 688999998775
Q ss_pred ccCCCCCceeEEEeccccccccC-----------------h--hhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLY-----------------E--SMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~-----------------~--~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+++|+++-++ .|+.-. . .-.+.++..+...|.|.|.++
T Consensus 106 ---l~~~~VDvLvfNP-PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 106 ---LRNESVDVLVFNP-PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred ---hccCCccEEEECC-CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 4569999999774 333211 1 124677888888999999987
No 186
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.58 E-value=3.4e-07 Score=89.39 Aligned_cols=103 Identities=23% Similarity=0.292 Sum_probs=78.5
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
..+.......+..+|||||+|+|.++..++++ +.-+++.+|. |.+++.+++ . ++|+++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~--------------~rv~~~ 148 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------A--------------DRVEFV 148 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------T--------------TTEEEE
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------c--------------cccccc
Confidence 44555556667789999999999999999988 5559999999 667877777 1 699999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCC--cEEec
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPG--GAILP 420 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~Lkpg--G~li~ 420 (497)
.||+.+ ++|. +|+++. .++|+. ......+|+.+.+.|+|| |+|++
T Consensus 149 ~gd~f~-----~~P~--~D~~~l---~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 149 PGDFFD-----PLPV--ADVYLL---RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp ES-TTT-----CCSS--ESEEEE---ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred cccHHh-----hhcc--ccceee---ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 999983 3554 999994 445544 345678999999999999 99883
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.57 E-value=5.8e-07 Score=88.57 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+.++......++.+|||||||+|.++..+++.+. .|+|+|+++.+++.+++++... ++++
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~----------------~~v~ 78 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLY----------------ERLE 78 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcC----------------CcEE
Confidence 3455666666777889999999999999999999976 7999999999999988776321 5799
Q ss_pred EEecchhhcccccCCCCCcee---EEEecc
Q 010913 364 VVQGMVEELGESMQIQPHSVD---VLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fD---vIvs~~ 390 (497)
++.+|+..+. ++ ++| +|+++.
T Consensus 79 v~~~D~~~~~----~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 79 VIEGDALKVD----LP--DFPKQLKVVSNL 102 (253)
T ss_pred EEECchhcCC----hh--HcCCcceEEEcC
Confidence 9999998863 32 566 888774
No 188
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.54 E-value=4.3e-07 Score=87.86 Aligned_cols=98 Identities=22% Similarity=0.223 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
...++||||+|.|..+..++.. ..+|+++|+|+.|....+ +.|+ +++ +..++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~----~kg~-----------------~vl--~~~~w~--- 146 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLS----KKGF-----------------TVL--DIDDWQ--- 146 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHH----hCCC-----------------eEE--ehhhhh---
Confidence 5678999999999999999887 558999999998865433 3343 333 223332
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
-.+.+||+|.|.. .|-....+..+|..+++.|+|+|++++...-+
T Consensus 147 -~~~~~fDvIscLN---vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 147 -QTDFKFDVISCLN---VLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred -ccCCceEEEeehh---hhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 1346899999754 55566788999999999999999998654433
No 189
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=5.3e-07 Score=94.94 Aligned_cols=118 Identities=25% Similarity=0.269 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 280 ~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
...+.+...++..+...++.+|||+-||.|.+++.+|+... +|+|||+++.+++.|+++++.|++
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i-------------- 340 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGI-------------- 340 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCC--------------
Confidence 34556666667777777889999999999999999997744 999999999999999999999998
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.|++|+.++++++..... ....+|+|+..+.--.+ -..+++.+.+ ++|..+++
T Consensus 341 ~N~~f~~~~ae~~~~~~~-~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvY 393 (432)
T COG2265 341 DNVEFIAGDAEEFTPAWW-EGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVY 393 (432)
T ss_pred CcEEEEeCCHHHHhhhcc-ccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEE
Confidence 579999999999852211 23588999977643222 2345555544 55666665
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.50 E-value=8.9e-07 Score=88.05 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=87.7
Q ss_pred CEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 299 AVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
++||-||.|.|..+..+.+. +..+++.||+++.+++.|++.+..... ....+|++++.+|..++- .
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~----------~~~dpRv~i~i~Dg~~~v---~ 144 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSG----------GADDPRVEIIIDDGVEFL---R 144 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccc----------ccCCCceEEEeccHHHHH---H
Confidence 69999999999999999999 467999999999999999998754321 011479999999998873 3
Q ss_pred CCCCceeEEEeccccccccChhh--HHHHHHHHhccccCCcEEeccCceeEEe
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESM--LSSVLFARDQWLKPGGAILPDTATMFVA 428 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~--l~~vL~~~~r~LkpgG~li~~~~~~~~~ 428 (497)
-...+||+|+....... ..-.. -..+++.+++.|+|+|+++..+.+.+..
T Consensus 145 ~~~~~fDvIi~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 145 DCEEKFDVIIVDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred hCCCcCCEEEEcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 33458999997642221 11111 1578899999999999999775554443
No 191
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.49 E-value=9.4e-07 Score=91.51 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=82.9
Q ss_pred CCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
+.+|||+.||+|..++.+++. |+.+|+++|+++.+++.++++++.|++ .++.++++|+..+.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~--------------~~~~v~~~Da~~~l-- 108 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV--------------ENIEVPNEDAANVL-- 108 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CcEEEEchhHHHHH--
Confidence 468999999999999999987 788999999999999999999999986 46899999998873
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.....+||+|...+. ..+..++..+.+.+++||+|.+.
T Consensus 109 -~~~~~~fDvIdlDPf-------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 109 -RYRNRKFHVIDIDPF-------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -HHhCCCCCEEEeCCC-------CCcHHHHHHHHHhcccCCEEEEE
Confidence 122367999997652 12345788888899999998854
No 192
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=8.1e-07 Score=90.08 Aligned_cols=100 Identities=24% Similarity=0.311 Sum_probs=84.6
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..|.+|||+-||.|.+|+.+|+.|...|+|+|++|.++..++++++.|++. +.|..++||+..+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-------------~~v~~i~gD~rev~-- 251 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-------------GRVEPILGDAREVA-- 251 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-------------ceeeEEeccHHHhh--
Confidence 569999999999999999999999877999999999999999999999983 56999999999984
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...+.+|-|+ |++.. .-..++..+.+.+++||++-
T Consensus 252 --~~~~~aDrIi---m~~p~----~a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 252 --PELGVADRII---MGLPK----SAHEFLPLALELLKDGGIIH 286 (341)
T ss_pred --hccccCCEEE---eCCCC----cchhhHHHHHHHhhcCcEEE
Confidence 2338899999 54332 33457777788899999986
No 193
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.47 E-value=4.7e-07 Score=83.49 Aligned_cols=110 Identities=22% Similarity=0.367 Sum_probs=86.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+.|..++..-+|++|||+|+|+|..++.++++|+..|++.|+.+...+..+-+++.||. .|.
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv---------------~i~ 130 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV---------------SIL 130 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc---------------eeE
Confidence 45667888999999999999999999999999999999999999999888888888888886 678
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++..|..- .+..||+|+. +..+.....-..++. ..+.|+..|..+
T Consensus 131 ~~~~d~~g-------~~~~~Dl~La---gDlfy~~~~a~~l~~-~~~~l~~~g~~v 175 (218)
T COG3897 131 FTHADLIG-------SPPAFDLLLA---GDLFYNHTEADRLIP-WKDRLAEAGAAV 175 (218)
T ss_pred EeeccccC-------CCcceeEEEe---eceecCchHHHHHHH-HHHHHHhCCCEE
Confidence 88776532 4678999994 445444455566666 555555555543
No 194
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.8e-07 Score=80.75 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=68.1
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..-..|++++|+|||.|-++..++-.+...|+|+|+.+.+++++++++....+ ++.++++++.++
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv---------------qidlLqcdildl 108 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV---------------QIDLLQCDILDL 108 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh---------------hhheeeeeccch
Confidence 34568999999999999999777766888999999999999999999988765 679999999887
Q ss_pred ccccCCCCCceeEEEecc
Q 010913 373 GESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~ 390 (497)
. +..+.||.++.++
T Consensus 109 e----~~~g~fDtaviNp 122 (185)
T KOG3420|consen 109 E----LKGGIFDTAVINP 122 (185)
T ss_pred h----ccCCeEeeEEecC
Confidence 4 5568999999776
No 195
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.44 E-value=2.3e-06 Score=76.99 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=87.3
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+........|.-||++|.|||.++..+.++|. ..+++++.|+..+....+.. +.+.
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------------------p~~~ 97 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------------------PGVN 97 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------------------CCcc
Confidence 34455556667889999999999999999999975 58999999999998777764 4567
Q ss_pred EEecchhhccccc-CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 364 VVQGMVEELGESM-QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 364 ~i~gd~~~l~~~l-~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.||+.++...+ ......||.|+|.... ..+......++|..+...|.+||.++
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPl-l~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPL-LNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEecccc-ccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 8999998875222 2456789999986421 22233445678899999999999998
No 196
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.44 E-value=2.5e-06 Score=79.74 Aligned_cols=94 Identities=31% Similarity=0.421 Sum_probs=78.8
Q ss_pred EEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 300 VVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
+|+|||+|.|.=++.+|-. +..+|+.+|.+.+-+...+..+...|+ ++++++++++++. .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L--------------~nv~v~~~R~E~~-----~ 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL--------------SNVEVINGRAEEP-----E 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---------------SSEEEEES-HHHT-----T
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC--------------CCEEEEEeeeccc-----c
Confidence 8999999999988888776 556999999999999999999999998 5899999999992 3
Q ss_pred CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 379 QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...+||+|+|-.+ ..+..++.-+..+|+|||.++
T Consensus 112 ~~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l 145 (184)
T PF02527_consen 112 YRESFDVVTARAV-------APLDKLLELARPLLKPGGRLL 145 (184)
T ss_dssp TTT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEE
T ss_pred cCCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEE
Confidence 5789999998653 345678888899999999987
No 197
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.42 E-value=8.5e-07 Score=87.44 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCCH----hHHHHHHcC------CCEEEEEeCCHHHHHHHHHHHHh-----CCCCCCC---------C-C
Q 010913 297 KGAVVMDIGCGTGI----LSLFAAQAG------ASRVIAVEASEKMAAVATQIAKD-----NDFWWDR---------P-Q 351 (497)
Q Consensus 297 ~~~~VLDvGCGtG~----ls~~la~~G------~~~V~gvD~S~~~i~~A~~~~~~-----~gl~~~~---------~-~ 351 (497)
..-+|+-+||+||- +++.+.+.+ .-+|+|+|+|..+++.|+.-+.. .++.... . .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999995 566666663 24899999999999999864422 2221100 1 1
Q ss_pred CCCCCCCCCceEEEecchhhcccccCCCCCceeEEEecc-ccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 352 SEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 352 ~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~-~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+.......|.|-+.++..-. ...+.||+|+|-. |.| +..+....++...+..|+|||.|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~----~~~~~fD~IfCRNVLIY--Fd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS----PFLGKFDLIFCRNVLIY--FDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc----cccCCCCEEEEcceEEe--eCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2244445567888888876642 2567899999955 444 345667889999999999999998543
No 198
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.42 E-value=9.5e-07 Score=80.56 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=57.3
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
.+|+|+.||.|+.++.+|+.+. +|+|||+++..++.|+.+++-.|+ .++|.++++|..++...+..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv-------------~~~I~~i~gD~~~~~~~~~~ 66 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGV-------------ADNIDFICGDFFELLKRLKS 66 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT--------------GGGEEEEES-HHHHGGGB--
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCC-------------CCcEEEEeCCHHHHHhhccc
Confidence 3799999999999999999955 999999999999999999999997 36999999999887532221
Q ss_pred CCCceeEEEecc
Q 010913 379 QPHSVDVLVSEW 390 (497)
Q Consensus 379 ~~~~fDvIvs~~ 390 (497)
...+|+|+.++
T Consensus 67 -~~~~D~vFlSP 77 (163)
T PF09445_consen 67 -NKIFDVVFLSP 77 (163)
T ss_dssp -----SEEEE--
T ss_pred -cccccEEEECC
Confidence 11289999875
No 199
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.41 E-value=8.8e-07 Score=88.39 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCCH----hHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHHHh----CCCCC--------C-----CCC
Q 010913 298 GAVVMDIGCGTGI----LSLFAAQA-G----ASRVIAVEASEKMAAVATQIAKD----NDFWW--------D-----RPQ 351 (497)
Q Consensus 298 ~~~VLDvGCGtG~----ls~~la~~-G----~~~V~gvD~S~~~i~~A~~~~~~----~gl~~--------~-----~~~ 351 (497)
.-+|+..||+||- +++.+... + .-+|+|+|+|+.+++.|++-... .++.. . ...
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999995 56666654 1 13799999999999999875311 01100 0 000
Q ss_pred CCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 352 SEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 352 ~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
+.+.......|+|.+.|+.+.. ..+.+.||+|+|..+... +.......++..+.+.|+|||+|++...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~---~~~~~~fD~I~cRNvliy-F~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ---WAVPGPFDAIFCRNVMIY-FDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC---CccCCCcceeeHhhHHhc-CCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 1222334467899998887642 112578999999653222 2446788999999999999999985443
No 200
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=2.1e-07 Score=87.44 Aligned_cols=100 Identities=23% Similarity=0.370 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
...++|||||.|.++..+...|..+++-+|.|..|++.++.. +.+++ .+....+|-+.+ +
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i---------------~~~~~v~DEE~L----d 132 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI---------------ETSYFVGDEEFL----D 132 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce---------------EEEEEecchhcc----c
Confidence 357999999999999999999999999999999999877643 33443 456677777776 4
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+..+++|+|+++. .+++..+++..+..+...|||+|.++-
T Consensus 133 f~ens~DLiisSl---slHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 133 FKENSVDLIISSL---SLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred ccccchhhhhhhh---hhhhhccCchHHHHHHHhcCCCccchh
Confidence 8999999999875 667778889999999999999999983
No 201
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.40 E-value=3.6e-06 Score=82.58 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=100.4
Q ss_pred hccccccccccchhHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C--CCEEEEEeCCHHHHH
Q 010913 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G--ASRVIAVEASEKMAA 334 (497)
Q Consensus 258 ~~~~Yf~~y~~~~ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G--~~~V~gvD~S~~~i~ 334 (497)
.+..|.++-+--+|...-.. -.+..+++|........+-+||||.||.|...+-+... + ...|.-.|.|+..++
T Consensus 99 iDr~yLnaiGWrGIR~Rk~~---l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~ 175 (311)
T PF12147_consen 99 IDRNYLNAIGWRGIRQRKVH---LEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE 175 (311)
T ss_pred HHHhhhcccchHHHHHHHHH---HHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH
Confidence 45667666655555442111 11233444443334456789999999999987766655 3 369999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccC
Q 010913 335 VATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKP 414 (497)
Q Consensus 335 ~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkp 414 (497)
..++.++..|+. +.++|.++|+.+...... -...+++++.+.+.-.+..-.++...|..+.+.+.|
T Consensus 176 ~g~~li~~~gL~-------------~i~~f~~~dAfd~~~l~~-l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~p 241 (311)
T PF12147_consen 176 KGRALIAERGLE-------------DIARFEQGDAFDRDSLAA-LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEP 241 (311)
T ss_pred HHHHHHHHcCCc-------------cceEEEecCCCCHhHhhc-cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCC
Confidence 999999999993 456999999877642212 244578877665433333335577789999999999
Q ss_pred CcEEe
Q 010913 415 GGAIL 419 (497)
Q Consensus 415 gG~li 419 (497)
||+++
T Consensus 242 gG~lI 246 (311)
T PF12147_consen 242 GGYLI 246 (311)
T ss_pred CcEEE
Confidence 99998
No 202
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.39 E-value=1.9e-06 Score=88.92 Aligned_cols=94 Identities=28% Similarity=0.413 Sum_probs=65.5
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
++.+.+.++..+...++ .|||+.||+|.+|+.+|+.+. +|+|||.++.+++.|+++++.|++ ++
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i--------------~n 245 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGI--------------DN 245 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT----------------S
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCC--------------Cc
Confidence 34455556666665555 899999999999999998854 999999999999999999999998 68
Q ss_pred eEEEecchhhccccc------------CCCCCceeEEEeccc
Q 010913 362 MEVVQGMVEELGESM------------QIQPHSVDVLVSEWM 391 (497)
Q Consensus 362 i~~i~gd~~~l~~~l------------~~~~~~fDvIvs~~~ 391 (497)
++|+.++++++...+ ......+|+|+..++
T Consensus 246 ~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 246 VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 999999887753211 012336899997764
No 203
>PRK00536 speE spermidine synthase; Provisional
Probab=98.38 E-value=1.8e-06 Score=84.89 Aligned_cols=106 Identities=11% Similarity=0.023 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..+++||-||.|.|..+..+.|+.. +|+.||+++.+++.+++.+.... .+...+|++++.. +.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~----------~~~~DpRv~l~~~-~~~---- 134 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFH----------EVKNNKNFTHAKQ-LLD---- 134 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHH----------HhhcCCCEEEeeh-hhh----
Confidence 4579999999999999999999965 99999999999999999654321 0122478888762 211
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
...++||+||.... ....+.+.+.+.|+|||+++....+++.
T Consensus 135 --~~~~~fDVIIvDs~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 135 --LDIKKYDLIICLQE--------PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred --ccCCcCCEEEEcCC--------CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 22468999997631 1256778899999999999977766553
No 204
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.38 E-value=6.5e-07 Score=83.84 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
...+|+|.-||.|+.+...|..|+ .|++||+++.-+..|+.+++-.|+ +++|+|++||+.++-.++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI-------------~~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGV-------------PDRITFICGDFLDLASKL 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecC-------------CceeEEEechHHHHHHHH
Confidence 557899999999999999988888 899999999999999999999998 469999999999987666
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+....+|+|+..+ -..+++-+..-+..+..++.|.|.-+
T Consensus 160 q~~K~~~~~vf~sp---pwggp~y~~~~~~DL~~~~~p~~~~~ 199 (263)
T KOG2730|consen 160 KADKIKYDCVFLSP---PWGGPSYLRADVYDLETHLKPMGTKI 199 (263)
T ss_pred hhhhheeeeeecCC---CCCCcchhhhhhhhhhhhcchhHHHH
Confidence 66667788888543 33444555555666677777776544
No 205
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.37 E-value=2.1e-06 Score=82.99 Aligned_cols=88 Identities=28% Similarity=0.365 Sum_probs=74.2
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
....+.|.....+.++..||++|.|||.++..+..+|+ +|+|+++++.|+....++.+.... ....
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~-------------~~kL 109 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPK-------------SGKL 109 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCc-------------ccee
Confidence 35677788888999999999999999999999999987 999999999999988888754433 3689
Q ss_pred EEEecchhhcccccCCCCCceeEEEecc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
+++.||+...+ ...||++|++.
T Consensus 110 qV~~gD~lK~d------~P~fd~cVsNl 131 (315)
T KOG0820|consen 110 QVLHGDFLKTD------LPRFDGCVSNL 131 (315)
T ss_pred eEEecccccCC------CcccceeeccC
Confidence 99999997753 34699999864
No 206
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.36 E-value=3.2e-06 Score=94.97 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCCC-CCCCEEEEEcCCCCHhHHHHHHcC------------------------------------------
Q 010913 283 DSYRQAILENPSL-MKGAVVMDIGCGTGILSLFAAQAG------------------------------------------ 319 (497)
Q Consensus 283 ~~y~~~i~~~~~~-~~~~~VLDvGCGtG~ls~~la~~G------------------------------------------ 319 (497)
+.+...|+..... .++..++|.+||+|.+.+.+|..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4667777777666 568899999999999998887631
Q ss_pred -CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccc-cccccC
Q 010913 320 -ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLY 397 (497)
Q Consensus 320 -~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~-~~~l~~ 397 (497)
..+++|+|+++.++..|++++..+|+. +.|.+.++|+.++.. +...++||+|++++. +.-+..
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~-------------~~i~~~~~D~~~~~~--~~~~~~~d~IvtNPPYg~r~~~ 319 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVA-------------ELITFEVKDVADLKN--PLPKGPTGLVISNPPYGERLGE 319 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCC-------------cceEEEeCChhhccc--ccccCCCCEEEECCCCcCccCc
Confidence 126999999999999999999999983 579999999988741 222357999999964 222222
Q ss_pred hhhHHHHHHHHhccc---cCCcEEec
Q 010913 398 ESMLSSVLFARDQWL---KPGGAILP 420 (497)
Q Consensus 398 ~~~l~~vL~~~~r~L---kpgG~li~ 420 (497)
..++..+...+...| .||+.+++
T Consensus 320 ~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 320 EPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 334444444444444 38877653
No 207
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.36 E-value=3.5e-07 Score=95.60 Aligned_cols=118 Identities=19% Similarity=0.401 Sum_probs=75.7
Q ss_pred hHHHHHHHHhCCCC--CCC--CEEEEEcCCCCHhHHHHHHcCCCEEEEE---eCCHHHHHHHHHHHHhCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSL--MKG--AVVMDIGCGTGILSLFAAQAGASRVIAV---EASEKMAAVATQIAKDNDFWWDRPQSEG 354 (497)
Q Consensus 282 ~~~y~~~i~~~~~~--~~~--~~VLDvGCGtG~ls~~la~~G~~~V~gv---D~S~~~i~~A~~~~~~~gl~~~~~~~~~ 354 (497)
...|.+.|.+.... ..| .++||+|||+|.++..+..++. .+..+ |..+..++.|.++ |+
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gv--------- 163 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GV--------- 163 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----Cc---------
Confidence 34677677666554 222 5799999999999999999866 33332 3334455555443 33
Q ss_pred CCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccC-hhhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 355 NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY-ESMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 355 ~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-~~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
-.+.+-+ ....+|++.+.||+|.|.- |+.. ...-..+|.++.|+|+|||+++.+.+..+
T Consensus 164 --------pa~~~~~--~s~rLPfp~~~fDmvHcsr---c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 164 --------PAMIGVL--GSQRLPFPSNAFDMVHCSR---CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --------chhhhhh--ccccccCCccchhhhhccc---ccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 1121211 0223589999999999753 3332 22234588999999999999997766554
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.2e-06 Score=83.80 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=72.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
...+.|.....+.++.+||+||+|.|.++..+++.+. +|+|||+++.++...++.... .++++
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~----------------~~n~~ 79 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP----------------YDNLT 79 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc----------------ccceE
Confidence 4567788888888899999999999999999999977 899999999999988887642 26899
Q ss_pred EEecchhhcccccCCCCC-ceeEEEecc
Q 010913 364 VVQGMVEELGESMQIQPH-SVDVLVSEW 390 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~-~fDvIvs~~ 390 (497)
++.+|+...+ ++.- .++.||++.
T Consensus 80 vi~~DaLk~d----~~~l~~~~~vVaNl 103 (259)
T COG0030 80 VINGDALKFD----FPSLAQPYKVVANL 103 (259)
T ss_pred EEeCchhcCc----chhhcCCCEEEEcC
Confidence 9999999875 4332 688999884
No 209
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.34 E-value=2.1e-06 Score=92.77 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+..+||||||.|.+...+|+. +-..++|||++...+..|.+.+...++ .|+.++.+++..+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--------------~N~~~~~~~~~~~~~- 411 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI--------------TNFLLFPNNLDLILN- 411 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC--------------CeEEEEcCCHHHHHH-
Confidence 4689999999999999999988 556999999999999999888888887 588899998876543
Q ss_pred cCCCCCceeEEEecccccc--ccChh---hHHHHHHHHhccccCCcEEeccCc
Q 010913 376 MQIQPHSVDVLVSEWMGYC--LLYES---MLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~--l~~~~---~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
-++++++|.|+.....-. -.|.. .-..++..+.++|||||.+.+.|.
T Consensus 412 -~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 412 -DLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred -hcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 267889999995432111 01111 125788999999999999985444
No 210
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=3.2e-06 Score=80.13 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=88.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.+..++++||||.=||..++..|.+ .-++|+++|+++...+++.+..+..|+. .+|++++|++.+
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-------------~KI~~i~g~a~e 136 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-------------HKITFIEGPALE 136 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-------------ceeeeeecchhh
Confidence 3467899999999999998888877 2359999999999999999999988883 689999999755
Q ss_pred ccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 372 LGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 372 l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
.-..+ ..+.++||.++... ...+-...+.++.++||+||+|+.+....+.
T Consensus 137 sLd~l~~~~~~~tfDfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred hHHHHHhcCCCCceeEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 32111 13478999999432 2233346677788999999999977654444
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.33 E-value=1.2e-06 Score=85.83 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
++++||-||.|.|..+..+.+.. ..+|++||+++.+++.|++.+...... ...++++++.+|+..+-.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~----------~~d~r~~i~~~Dg~~~l~- 144 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG----------LDDPRVRIIIGDGRKFLK- 144 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT----------GGSTTEEEEESTHHHHHH-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc----------cCCCceEEEEhhhHHHHH-
Confidence 67999999999999999999984 679999999999999999977543210 123699999999987632
Q ss_pred cCCCCC-ceeEEEeccccccccCh-hhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPH-SVDVLVSEWMGYCLLYE-SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~-~fDvIvs~~~~~~l~~~-~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
-... +||+|+........... -.-..++..+.+.|+|||+++..
T Consensus 145 --~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 145 --ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp --TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred --hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 2334 89999976422110000 11257889999999999999844
No 212
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=8.5e-07 Score=92.40 Aligned_cols=177 Identities=20% Similarity=0.269 Sum_probs=126.3
Q ss_pred hHHhhhcchhhhHHHHHHHHhCCCC-----CC--CCEEEEEcCCCCHhHHHHHHc---C--CCEEEEEeCCHHHHHHHHH
Q 010913 271 IHREMISDKVRTDSYRQAILENPSL-----MK--GAVVMDIGCGTGILSLFAAQA---G--ASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 271 ih~~ml~d~~r~~~y~~~i~~~~~~-----~~--~~~VLDvGCGtG~ls~~la~~---G--~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+-+|.+.+..|.++|+..+.- .+ ..+|+-+|+|.|-+.....++ - --++++|+-+|.++-..+.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~ 413 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN 413 (649)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh
Confidence 4566678999999999998765321 11 357899999999875544433 1 1389999999998865444
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEE
Q 010913 339 IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 339 ~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~l 418 (497)
..... +.++|+++.+|+..+. .|..+.|++||+.+|.+--.+ --+..|..+.++|||+|+.
T Consensus 414 -~n~~~-------------W~~~Vtii~~DMR~w~----ap~eq~DI~VSELLGSFGDNE-LSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 414 -RNFEC-------------WDNRVTIISSDMRKWN----APREQADIIVSELLGSFGDNE-LSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred -hchhh-------------hcCeeEEEeccccccC----CchhhccchHHHhhccccCcc-CCHHHHHHHHhhcCCCceE
Confidence 22222 2479999999999985 234899999999877654333 3456889999999999999
Q ss_pred eccCceeEEeeecCCCCCCCccccccCccccccchHHHhhhcCCCeEeeeCCCcccccch
Q 010913 419 LPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSV 478 (497)
Q Consensus 419 i~~~~~~~~~~~~~~~~~~~fw~~v~g~~~~~~~~~~~~~~~~~p~v~~v~~~~l~t~~~ 478 (497)
||...+-++.++..+ .+|.++..... ...|..|+|....+-..++++.
T Consensus 475 IP~sYtSyi~PImS~----~l~q~v~a~~~--------~~~fe~~YVV~l~~~~~La~~q 522 (649)
T KOG0822|consen 475 IPSSYTSYIAPIMSP----KLYQEVKATND--------PNAFEAPYVVLLHNYCILAEPQ 522 (649)
T ss_pred ccchhhhhhcccccH----HHHHHHHhcCC--------ccccccceEEEecceeecCCCC
Confidence 999999988887543 24554432211 1566777888888888877773
No 213
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.28 E-value=9e-06 Score=83.15 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCC----------------------------------------E
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS----------------------------------------R 322 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~----------------------------------------~ 322 (497)
+....+|+......++..++|-=||+|.+.+.+|-.+.. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 467778888888888899999999999999999887531 3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccc-cccccChhhH
Q 010913 323 VIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLYESML 401 (497)
Q Consensus 323 V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~-~~~l~~~~~l 401 (497)
++|+|+++.+++.|+.+++..|+ .+.|+|.++|+..+. -+...+|+|||++. |.-+..+...
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv-------------~d~I~f~~~d~~~l~----~~~~~~gvvI~NPPYGeRlg~~~~v 319 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGV-------------GDLIEFKQADATDLK----EPLEEYGVVISNPPYGERLGSEALV 319 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCC-------------CceEEEEEcchhhCC----CCCCcCCEEEeCCCcchhcCChhhH
Confidence 77999999999999999999998 468999999999985 22278999999963 2223333333
Q ss_pred H----HHHHHHhccccCCcEEeccCcee
Q 010913 402 S----SVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 402 ~----~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
. .+...+.+.++-.+..++.+...
T Consensus 320 ~~LY~~fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 320 AKLYREFGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence 3 33445567777777777665544
No 214
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.28 E-value=1.8e-06 Score=80.98 Aligned_cols=88 Identities=24% Similarity=0.321 Sum_probs=54.1
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
...++.+|-|+|||.+.++..+. .+. +|...|+-+. | + .++.+|+..+
T Consensus 69 ~~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva~-----------n----------------~--~Vtacdia~v- 116 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP-----------N----------------P--RVTACDIANV- 116 (219)
T ss_dssp TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-S-----------S----------------T--TEEES-TTS--
T ss_pred hcCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccCC-----------C----------------C--CEEEecCccC-
Confidence 34556899999999999985543 233 7999998541 1 2 3567888776
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
|++++++|++|.+. .|.. .+...+|.++.|+|||||.|.+
T Consensus 117 ---PL~~~svDv~VfcL---SLMG-Tn~~~fi~EA~RvLK~~G~L~I 156 (219)
T PF05148_consen 117 ---PLEDESVDVAVFCL---SLMG-TNWPDFIREANRVLKPGGILKI 156 (219)
T ss_dssp ---S--TT-EEEEEEES------S-S-HHHHHHHHHHHEEEEEEEEE
T ss_pred ---cCCCCceeEEEEEh---hhhC-CCcHHHHHHHHheeccCcEEEE
Confidence 68999999999653 2222 3678899999999999999984
No 215
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.24 E-value=6.6e-06 Score=78.24 Aligned_cols=114 Identities=23% Similarity=0.307 Sum_probs=68.7
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHH-------hCCCCCCCCCCCCCCCCCC
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAK-------DNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~-------~~gl~~~~~~~~~~~~~~~ 360 (497)
|+....+.++.+.+|||||.|...+.+|-. ++.+++|||+.+.....|+...+ ..|.. ..
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~------------~~ 101 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR------------PG 101 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---------------
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc------------cc
Confidence 445567788999999999999988877755 88889999999998887765332 23331 35
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.+.+||+.+.+.. ...-...|+|+++. .. +.+++...|..+..-||||.+++
T Consensus 102 ~v~l~~gdfl~~~~~-~~~~s~AdvVf~Nn---~~-F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 102 KVELIHGDFLDPDFV-KDIWSDADVVFVNN---TC-FDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp EEEEECS-TTTHHHH-HHHGHC-SEEEE-----TT-T-HHHHHHHHHHHTTS-TT-EEE
T ss_pred cceeeccCccccHhH-hhhhcCCCEEEEec---cc-cCHHHHHHHHHHHhcCCCCCEEE
Confidence 789999998654210 00113579999765 33 34456666677788899998887
No 216
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.22 E-value=4.7e-06 Score=83.43 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=69.0
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.++..+.+.+|.++||.+||.|..|..+++.. ..+|+|+|.++.+++.|++++.. . +++.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~--------------~ri~ 71 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F--------------GRFT 71 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C--------------CcEE
Confidence 3445556666788999999999999999999883 36999999999999999988643 2 5899
Q ss_pred EEecchhhcccccCCCCCceeEEEec
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSE 389 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~ 389 (497)
+++++..++...++-...++|+|+..
T Consensus 72 ~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 72 LVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred EEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 99999998753222111279999975
No 217
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.22 E-value=8.2e-06 Score=76.83 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=75.3
Q ss_pred EEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc--
Q 010913 300 VVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM-- 376 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l-- 376 (497)
+||+||||||..+.++|++ +.-.-.-.|..+....-.+..+...++.+ ...-+..|+.......
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N-------------v~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN-------------VRPPLALDVSAPPWPWEL 94 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc-------------cCCCeEeecCCCCCcccc
Confidence 6999999999999999988 54477788888887655666666666521 1122334443332111
Q ss_pred --CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 377 --QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 377 --~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++...+||+|+|..|.+.. ..+....++..+.++|+|||.|++
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHIS-PWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ccccCCCCcceeeehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1235689999998776543 445678899999999999999983
No 218
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=4.8e-06 Score=87.15 Aligned_cols=124 Identities=23% Similarity=0.239 Sum_probs=87.8
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
.+.+...|-.++.+..++.+||+.||||.+++.+|+. +++|+||++++..+..|+.++..||+ .+
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi--------------sN 432 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI--------------SN 432 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc--------------cc
Confidence 4456667777888889999999999999999999875 77999999999999999999999998 68
Q ss_pred eEEEecchhhcccccCCC-CCcee-EEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 362 MEVVQGMVEELGESMQIQ-PHSVD-VLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~-~~~fD-vIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
.+|++|.++++-.++--+ -.+-+ +++..+.--.+ -..++.++.++-+|--+++ -+|+++
T Consensus 433 a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl-----h~~~ik~l~~~~~~~rlvy-vSCn~~ 493 (534)
T KOG2187|consen 433 ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL-----HMKVIKALRAYKNPRRLVY-VSCNPH 493 (534)
T ss_pred eeeeecchhhccchhcccCCCCCceEEEECCCcccc-----cHHHHHHHHhccCccceEE-EEcCHH
Confidence 999999888764322111 12344 44444422111 2346666666655654443 444443
No 219
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.7e-06 Score=78.43 Aligned_cols=108 Identities=22% Similarity=0.281 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc-CCC--EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA-GAS--RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~-G~~--~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
+.||.+.||+|.|||.++-.+++. |+. .++|||.=+..++.+++++...-- +.+........++.++.||...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~----~~e~~~~~~~~~l~ivvGDgr~ 155 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDIT----TSESSSKLKRGELSIVVGDGRK 155 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhcc----CchhhhhhccCceEEEeCCccc
Confidence 579999999999999999988876 442 349999999999999999865321 1111222334678999999988
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. -+..+||.|.+-. ....+..++...|+|||.++
T Consensus 156 g~----~e~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 156 GY----AEQAPYDAIHVGA---------AASELPQELLDQLKPGGRLL 190 (237)
T ss_pred cC----CccCCcceEEEcc---------CccccHHHHHHhhccCCeEE
Confidence 74 4577999999532 11234445556788888877
No 220
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.5e-05 Score=77.25 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=88.3
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..|+..+.+.||.+||+-|.|+|.+|.+++++ +.++++..|+-+.-.+.|++-++..|+ ++++++
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-------------~~~vt~ 161 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-------------GDNVTV 161 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-------------CcceEE
Confidence 44667778899999999999999999999998 447999999999999999999999998 579999
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCc-EEe
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG-AIL 419 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG-~li 419 (497)
++.|+.... .......+|+|+... +.+...+..+...||.+| ++.
T Consensus 162 ~hrDVc~~G--F~~ks~~aDaVFLDl--------PaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 162 THRDVCGSG--FLIKSLKADAVFLDL--------PAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred EEeecccCC--ccccccccceEEEcC--------CChhhhhhhhHHHhhhcCceEE
Confidence 999998765 223367899998543 344455666667888877 444
No 221
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.14 E-value=2e-05 Score=74.94 Aligned_cols=96 Identities=25% Similarity=0.335 Sum_probs=70.3
Q ss_pred EEEEcCCCCHhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 301 VMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 301 VLDvGCGtG~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
|.||||-.|.+++.|.+.|. .+|+++|+++..++.|++++...|+. ++|.++.||..+. ++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-------------~~i~~rlgdGL~~-----l~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-------------DRIEVRLGDGLEV-----LK 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-------------TTEEEEE-SGGGG-------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-------------ccEEEEECCcccc-----cC
Confidence 68999999999999999975 58999999999999999999999983 6899999998664 44
Q ss_pred CCc-eeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 380 PHS-VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 380 ~~~-fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++. +|+|+...||-- ....+|.+....++....++
T Consensus 63 ~~e~~d~ivIAGMGG~-----lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 63 PGEDVDTIVIAGMGGE-----LIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp GGG---EEEEEEE-HH-----HHHHHHHHTGGGGTT--EEE
T ss_pred CCCCCCEEEEecCCHH-----HHHHHHHhhHHHhccCCeEE
Confidence 554 899998877653 34567776666665554555
No 222
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=3e-05 Score=80.11 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=89.8
Q ss_pred CCCCCCCCEEEEEcCCCCHhHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGA---SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGtG~ls~~la~~G~---~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
.+...+|.+|||+.++.|.=+..+|.... ..|+|+|.++.-+...++++++.|+ .++.++..|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~--------------~nv~~~~~d 216 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV--------------RNVIVVNKD 216 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC--------------CceEEEecc
Confidence 45668899999999999998888887722 3579999999999999999999998 467788877
Q ss_pred hhhcccccCCCCCceeEEEeccc--ccccc--C---------------hhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 369 VEELGESMQIQPHSVDVLVSEWM--GYCLL--Y---------------ESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~--~~~l~--~---------------~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
...+.... ....+||.|+.... +.... + ..-..++|....++|||||.|+.+||++..
T Consensus 217 ~~~~~~~~-~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 217 ARRLAELL-PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cccccccc-cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 76543211 12236999997431 11111 0 112357899999999999999999998843
No 223
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.13 E-value=3.2e-05 Score=76.21 Aligned_cols=113 Identities=21% Similarity=0.182 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC-----------------------
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE----------------------- 353 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~----------------------- 353 (497)
.+.+||--|||.|+++..+|++|. .|.|.|.|--|+-...-.+. +.. ..++..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn--~~~-~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILN--HCS-QPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHc--ccC-CCCcEEEecceecccCCCCHHHhCCceEe
Confidence 457999999999999999999999 99999999999854333322 100 000000
Q ss_pred C------CCCCCCceEEEecchhhcccccCCC--CCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 354 G------NINNAGKMEVVQGMVEELGESMQIQ--PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 354 ~------~~~~~~~i~~i~gd~~~l~~~l~~~--~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
. ......++....||+.++- +-+ .+++|+|++.. ++-...++-..|..+.++|||||+.|
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y---~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVY---GPDENKGSFDVVVTCF---FIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEec---CCcccCCcccEEEEEE---EeechHHHHHHHHHHHHHhccCCEEE
Confidence 1 1233567889999988873 111 36999999763 66666788899999999999999766
No 224
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.13 E-value=3.1e-06 Score=78.92 Aligned_cols=107 Identities=25% Similarity=0.334 Sum_probs=63.9
Q ss_pred HHHhCCC-CC--CCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 288 AILENPS-LM--KGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 288 ~i~~~~~-~~--~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
.|..... +. ++.+|||+||++|.++..+++++ ..+|+|||+.+. ..+ ..+
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~--------------~~~ 65 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL--------------QNV 65 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---------------TTE
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc--------------cce
Confidence 3444444 33 45899999999999999999997 569999999875 010 245
Q ss_pred EEEecchhhcc------cccCCCCCceeEEEeccccccccC--------hhhHHHHHHHHhccccCCcEEe
Q 010913 363 EVVQGMVEELG------ESMQIQPHSVDVLVSEWMGYCLLY--------ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 363 ~~i~gd~~~l~------~~l~~~~~~fDvIvs~~~~~~l~~--------~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+++|+.+.. ..++-...++|+|+|.....+-.. .......+.-+.++|+|||.++
T Consensus 66 ~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 66 SFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp EBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred eeeecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 55666654321 111112368999999752221111 1222344555668899999877
No 225
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.09 E-value=1.5e-05 Score=80.85 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=75.7
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--------CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--------GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNIN 357 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--------G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~ 357 (497)
.+.+.......++.+|+|.+||+|.+...+.+. ....++|+|+++.++..|+-++.-.+..
T Consensus 35 ~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----------- 103 (311)
T PF02384_consen 35 VDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----------- 103 (311)
T ss_dssp HHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-----------
T ss_pred HHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-----------
Confidence 334444445677889999999999998887762 3459999999999999998877666542
Q ss_pred CCCceEEEecchhhcccccCCC-CCceeEEEeccccccc--cC---------------hh-hHHHHHHHHhccccCCcEE
Q 010913 358 NAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCL--LY---------------ES-MLSSVLFARDQWLKPGGAI 418 (497)
Q Consensus 358 ~~~~i~~i~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l--~~---------------~~-~l~~vL~~~~r~LkpgG~l 418 (497)
.....+..+|..... ... ..+||+|+++++.... .. .. .-..++..+.+.|++||++
T Consensus 104 -~~~~~i~~~d~l~~~---~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 104 -NSNINIIQGDSLEND---KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp -CBGCEEEES-TTTSH---SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred -ccccccccccccccc---ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 123468888875543 122 5789999998742222 00 00 1124778888999999986
Q ss_pred e
Q 010913 419 L 419 (497)
Q Consensus 419 i 419 (497)
.
T Consensus 180 ~ 180 (311)
T PF02384_consen 180 A 180 (311)
T ss_dssp E
T ss_pred e
Confidence 5
No 226
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.07 E-value=6.6e-06 Score=78.96 Aligned_cols=85 Identities=24% Similarity=0.362 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
....+|-|+|||.+.++. +.. ..|+..|+-+ -+-.++.+|+.++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a-----------------------------~~~~V~~cDm~~v--- 222 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SER-HKVHSFDLVA-----------------------------VNERVIACDMRNV--- 222 (325)
T ss_pred cCceEEEecccchhhhhh---ccc-cceeeeeeec-----------------------------CCCceeeccccCC---
Confidence 556899999999998765 222 3799999743 1335677888886
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
|++++++||+|.+. .|.. .++..++.++.|+|+|||.+++.
T Consensus 223 -Pl~d~svDvaV~CL---SLMg-tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 223 -PLEDESVDVAVFCL---SLMG-TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred -cCccCcccEEEeeH---hhhc-ccHHHHHHHHHHHhccCceEEEE
Confidence 68999999998643 1211 46788999999999999999843
No 227
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.9e-05 Score=75.45 Aligned_cols=107 Identities=26% Similarity=0.263 Sum_probs=77.1
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~ 364 (497)
..++....-..+|+++||+|+.||.++..+.+.||++|+|||..-..+..--+. . .+| .+
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d----------------~rV~~~ 128 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---D----------------PRVIVL 128 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---C----------------CcEEEE
Confidence 334444444468999999999999999999999999999999998766532222 1 344 45
Q ss_pred EecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...++..+.... + .+..|+|++... + -.+..+|..+..+|+|+|.++
T Consensus 129 E~tN~r~l~~~~-~-~~~~d~~v~DvS-F-----ISL~~iLp~l~~l~~~~~~~v 175 (245)
T COG1189 129 ERTNVRYLTPED-F-TEKPDLIVIDVS-F-----ISLKLILPALLLLLKDGGDLV 175 (245)
T ss_pred ecCChhhCCHHH-c-ccCCCeEEEEee-h-----hhHHHHHHHHHHhcCCCceEE
Confidence 556777664211 2 237899997641 1 246789999999999999987
No 228
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=3.1e-05 Score=73.83 Aligned_cols=96 Identities=31% Similarity=0.404 Sum_probs=79.0
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+.+|+|||+|.|.=++.+|=. +..+|+-+|...+-+...+......++ ++++++++.++++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L--------------~nv~i~~~RaE~~~--- 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL--------------ENVEIVHGRAEEFG--- 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC--------------CCeEEehhhHhhcc---
Confidence 689999999999988887743 445799999999999999999999998 68999999999985
Q ss_pred CCCCCc-eeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 377 QIQPHS-VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 377 ~~~~~~-fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+... ||+|+|-.+ +.+..++.-+..+||+||.++
T Consensus 131 --~~~~~~D~vtsRAv-------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 131 --QEKKQYDVVTSRAV-------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred --cccccCcEEEeehc-------cchHHHHHHHHHhcccCCcch
Confidence 2223 999998653 345667777889999988865
No 229
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=98.01 E-value=4.5e-06 Score=82.15 Aligned_cols=83 Identities=16% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCCcceecCCCCCC-CHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHH
Q 010913 44 ESGFLCLFCDAGYS-SCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 44 ~~~~~CLFC~~~~~-s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~ 122 (497)
.-..+||||...+- +-.+.|.||...|+|++...-+..- .=.|+.-|..+....+|++|.+.|+++..|+.||+
T Consensus 142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVy-----vnelLehLkekL~r~~CLyCekifrdkntLkeHMr 216 (423)
T KOG2482|consen 142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVY-----VNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMR 216 (423)
T ss_pred eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceee-----HHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHH
Confidence 56789999987765 8899999999999998876322111 22355667777777889999999999999999999
Q ss_pred HhccCcccC
Q 010913 123 EAYNLKETK 131 (497)
Q Consensus 123 ~~~~~~~~~ 131 (497)
+|.|-+..+
T Consensus 217 kK~HrrinP 225 (423)
T KOG2482|consen 217 KKRHRRINP 225 (423)
T ss_pred hccCcccCC
Confidence 999988643
No 230
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.01 E-value=7.9e-05 Score=70.78 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=79.6
Q ss_pred HHHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 284 ~y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+..+|+. +..+.+|.+||-+|+++|...-.++.- | .+.|+||+.|+.........+++.
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--------------- 121 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--------------- 121 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---------------
Confidence 34555543 356789999999999999988888776 5 568999999997766555554443
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.||-.+.+|+........+ .+.+|+|++.. ....+..-++..+..+||+||.+++.
T Consensus 122 -~NIiPIl~DAr~P~~Y~~l-v~~VDvI~~DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 122 -PNIIPILEDARHPEKYRML-VEMVDVIFQDV-----AQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -TTEEEEES-TTSGGGGTTT-S--EEEEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CceeeeeccCCChHHhhcc-cccccEEEecC-----CChHHHHHHHHHHHhhccCCcEEEEE
Confidence 5888888998776544333 45999999764 23445666778888999999998843
No 231
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.97 E-value=1.2e-05 Score=82.75 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=87.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..+++..++|+|||.|..+...+..+...++|++.++..+..+.......++. ..-.++.+++..-
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-------------~k~~~~~~~~~~~- 172 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-------------NKCNFVVADFGKM- 172 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-------------hhcceehhhhhcC-
Confidence 45677899999999999999999886669999999999988888877766663 2334466777665
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
|+++..||.+.+. ...-|.+.+..++.+++|+++|||.++
T Consensus 173 ---~fedn~fd~v~~l---d~~~~~~~~~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 173 ---PFEDNTFDGVRFL---EVVCHAPDLEKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred ---CCCccccCcEEEE---eecccCCcHHHHHHHHhcccCCCceEE
Confidence 5889999999953 366777899999999999999999998
No 232
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=6.5e-06 Score=73.63 Aligned_cols=121 Identities=21% Similarity=0.337 Sum_probs=85.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
...-.++..+....|.+||++|.| ||..++.+|.. ..+.|.-.|-++..+.-.++....|.... -.+
T Consensus 16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~-----------~ts 84 (201)
T KOG3201|consen 16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS-----------LTS 84 (201)
T ss_pred HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc-----------cce
Confidence 445557777777889999999999 57777777766 66799999999999988888776663311 122
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+.++.-....-. ......+||+|++.- |+++.+--.++.+.+.++|+|.|..++
T Consensus 85 c~vlrw~~~~aq--sq~eq~tFDiIlaAD---ClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 85 CCVLRWLIWGAQ--SQQEQHTFDIILAAD---CLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ehhhHHHHhhhH--HHHhhCcccEEEecc---chhHHHHHHHHHHHHHHHhCcccceeE
Confidence 222222221111 123456899999654 887777888899999999999999663
No 233
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.91 E-value=4.7e-05 Score=76.25 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=88.7
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...+|.+|||+.+|.|.=+..++.. + .+.|+|+|+++.-+...++++++.|+ .++.++..|...
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--------------~~v~~~~~D~~~ 147 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--------------FNVIVINADARK 147 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---------------SSEEEEESHHHH
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--------------ceEEEEeecccc
Confidence 4578899999999999998888877 3 56999999999999999999999997 578888888877
Q ss_pred cccccCCCCCceeEEEecc----ccccccC---------------hhhHHHHHHHHhccc----cCCcEEeccCceeE
Q 010913 372 LGESMQIQPHSVDVLVSEW----MGYCLLY---------------ESMLSSVLFARDQWL----KPGGAILPDTATMF 426 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~----~~~~l~~---------------~~~l~~vL~~~~r~L----kpgG~li~~~~~~~ 426 (497)
... ......||.|+... .|..-.+ ......+|..+.++| ||||+++.++|++.
T Consensus 148 ~~~--~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 148 LDP--KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHH--HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccc--cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 631 12244699999743 2211111 111257888899999 99999999999873
No 234
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.90 E-value=3.4e-05 Score=76.43 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
....+.|.....+.++..|||||+|+|.+|..+++.+ .+|++||+++.+++..++.+.. .+++
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~----------------~~~~ 78 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS----------------NPNV 78 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT----------------CSSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh----------------cccc
Confidence 3556666666677789999999999999999999998 5999999999999888876542 2689
Q ss_pred EEEecchhhcccccCCCCCceeEEEecc
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEW 390 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~ 390 (497)
+++.+|+..++....+ ......|+++.
T Consensus 79 ~vi~~D~l~~~~~~~~-~~~~~~vv~Nl 105 (262)
T PF00398_consen 79 EVINGDFLKWDLYDLL-KNQPLLVVGNL 105 (262)
T ss_dssp EEEES-TTTSCGGGHC-SSSEEEEEEEE
T ss_pred eeeecchhccccHHhh-cCCceEEEEEe
Confidence 9999999988621101 24566777763
No 235
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.86 E-value=4e-05 Score=77.40 Aligned_cols=88 Identities=26% Similarity=0.334 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+.+|.++|||||++|.++..+++.|+ +|+|||..+ | +.. +.. .++|+.+.++...+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l---~~~-L~~----------------~~~V~h~~~d~fr~~- 265 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-M---AQS-LMD----------------TGQVEHLRADGFKFR- 265 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-c---CHh-hhC----------------CCCEEEEeccCcccC-
Confidence 46899999999999999999999999 999999665 2 222 222 257899998877663
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
| +.+.+|+++|... ..+..+..-+.++|..|
T Consensus 266 --p-~~~~vDwvVcDmv-------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 266 --P-PRKNVDWLVCDMV-------EKPARVAELMAQWLVNG 296 (357)
T ss_pred --C-CCCCCCEEEEecc-------cCHHHHHHHHHHHHhcC
Confidence 2 2678999998752 24556777778888776
No 236
>PRK10742 putative methyltransferase; Provisional
Probab=97.85 E-value=0.00013 Score=70.78 Aligned_cols=97 Identities=15% Similarity=0.000 Sum_probs=70.7
Q ss_pred HHHhCCCCCCCC--EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 288 AILENPSLMKGA--VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 288 ~i~~~~~~~~~~--~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
.|.+..++.+|. +|||+-+|+|..++.++.+|+ +|++||.++.+....++.++...... .....-..+++++
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~-----~~~~~~~~ri~l~ 150 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADA-----EIGGWLQERLQLI 150 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhcc-----ccchhhhceEEEE
Confidence 344445666776 999999999999999999999 59999999999998888887631100 0000001479999
Q ss_pred ecchhhcccccCCCCCceeEEEeccccc
Q 010913 366 QGMVEELGESMQIQPHSVDVLVSEWMGY 393 (497)
Q Consensus 366 ~gd~~~l~~~l~~~~~~fDvIvs~~~~~ 393 (497)
++|..++-. -...+||+|+..+|.-
T Consensus 151 ~~da~~~L~---~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 151 HASSLTALT---DITPRPQVVYLDPMFP 175 (250)
T ss_pred eCcHHHHHh---hCCCCCcEEEECCCCC
Confidence 999988742 2234799999988643
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.82 E-value=5.5e-05 Score=67.34 Aligned_cols=58 Identities=31% Similarity=0.444 Sum_probs=49.8
Q ss_pred EEEEEcCCCCHhHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 300 VVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~-~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
+|||+|||+|.+++.+++.+.. +|+++|+++.+.+.++++++.|++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~--------------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL--------------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC--------------CcEEEEEeeeeC
Confidence 4899999999999999998653 899999999999999999998886 357777766544
No 238
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.82 E-value=0.0002 Score=62.02 Aligned_cols=103 Identities=29% Similarity=0.395 Sum_probs=68.2
Q ss_pred EEEEcCCCCHhHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 301 VMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 301 VLDvGCGtG~ls~~la~~G~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
++|+|||+|..+ .++.... ..++|+|+++.++..++......+. ..+.++.++..... +++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~ 114 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL--------------GLVDFVVADALGGV--LPF 114 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC--------------CceEEEEeccccCC--CCC
Confidence 999999999977 4444422 3899999999999875544322111 11677777776510 245
Q ss_pred CC-CceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 379 QP-HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 379 ~~-~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.. ..||++.+.. .+.+.. +..++..+.+.|+|+|.++.....
T Consensus 115 ~~~~~~d~~~~~~---~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 115 EDSASFDLVISLL---VLHLLP-PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CCCCceeEEeeee---ehhcCC-HHHHHHHHHHhcCCCcEEEEEecc
Confidence 55 4899994322 211222 778999999999999998855443
No 239
>PTZ00357 methyltransferase; Provisional
Probab=97.82 E-value=7.2e-05 Score=80.45 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=99.5
Q ss_pred hHHhhhcchhhhHHHHHHHHhCCC-----------------C-------------C---CCCEEEEEcCCCCHhHHHHHH
Q 010913 271 IHREMISDKVRTDSYRQAILENPS-----------------L-------------M---KGAVVMDIGCGTGILSLFAAQ 317 (497)
Q Consensus 271 ih~~ml~d~~r~~~y~~~i~~~~~-----------------~-------------~---~~~~VLDvGCGtG~ls~~la~ 317 (497)
..+.+-+|.+.++.|.++|...+. . . ...+|+-+|+|-|-+.-.+.+
T Consensus 641 TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLr 720 (1072)
T PTZ00357 641 VYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLH 720 (1072)
T ss_pred hHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHH
Confidence 466677899999999998865431 0 0 113689999999987444333
Q ss_pred c----CC-CEEEEEeCCHHHHHHHHHHHHh-CCCCCCCCCCCCCCCCCCceEEEecchhhcccc-------cCCCCCcee
Q 010913 318 A----GA-SRVIAVEASEKMAAVATQIAKD-NDFWWDRPQSEGNINNAGKMEVVQGMVEELGES-------MQIQPHSVD 384 (497)
Q Consensus 318 ~----G~-~~V~gvD~S~~~i~~A~~~~~~-~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~-------l~~~~~~fD 384 (497)
+ |. -+|++||-++..+.....+... ....+ .+...+++|++|.+|+..+... +|..-+++|
T Consensus 721 Aak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n------~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaD 794 (1072)
T PTZ00357 721 AVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQ------LAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCD 794 (1072)
T ss_pred HHHHcCCcEEEEEEecCcchHHHHHHHHhccccccc------ccccCCCeEEEEeCcccccccccccccccccccccccc
Confidence 3 43 3899999996654444444322 12100 0111245799999999998521 011124899
Q ss_pred EEEeccccccccChhhHHHHHHHHhccccC----Cc-------EEeccCceeEEeeecCC
Q 010913 385 VLVSEWMGYCLLYESMLSSVLFARDQWLKP----GG-------AILPDTATMFVAGFGRG 433 (497)
Q Consensus 385 vIvs~~~~~~l~~~~~l~~vL~~~~r~Lkp----gG-------~li~~~~~~~~~~~~~~ 433 (497)
+|||+.+|.+--.+ --+..|..+.+.||+ +| +.||...+-++.++..+
T Consensus 795 IVVSELLGSFGDNE-LSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSp 853 (1072)
T PTZ00357 795 LIVSELLGSLGDNE-LSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSA 853 (1072)
T ss_pred eehHhhhccccccc-CCHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccH
Confidence 99999877654333 334577777788775 55 47888888888877644
No 240
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.81 E-value=4.7e-05 Score=74.63 Aligned_cols=121 Identities=21% Similarity=0.284 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCC-------CCCCCCCC-------C
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRP-------QSEGNINN-------A 359 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~-------~~~~~~~~-------~ 359 (497)
...+|.++||||||+-+.....|..-+..|+..|.++.-.+..++-++..+-.+-.+ .++....+ .
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 345788999999999888766665557799999999999887777664432100000 00100000 1
Q ss_pred Cce-EEEecchhhcccccCCCC-----CceeEEEecccccccc----ChhhHHHHHHHHhccccCCcEEec
Q 010913 360 GKM-EVVQGMVEELGESMQIQP-----HSVDVLVSEWMGYCLL----YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 360 ~~i-~~i~gd~~~l~~~l~~~~-----~~fDvIvs~~~~~~l~----~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..| .++.+|+.... |+.+ .+||+|+|.. ||. .......+++.+.++|||||.|+.
T Consensus 133 ~~Vk~Vv~cDV~~~~---pl~~~~~~p~~~D~v~s~f---cLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPN---PLDPPVVLPPKFDCVISSF---CLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHEEEEEE--TTSSS---TTTTS-SS-SSEEEEEEES---SHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HhhceEEEeeccCCC---CCCccccCccchhhhhhhH---HHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 224 47888987765 3333 3599999654 443 345667888999999999999983
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.80 E-value=0.00016 Score=72.75 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.-.+||-+|.|.|.....+.|.+ ..+|+-||.+|+|++.++.+.--..+ +.++....+++++..|+.++-
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~-------N~~sf~dpRv~Vv~dDAf~wl-- 359 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL-------NQGSFSDPRVTVVNDDAFQWL-- 359 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh-------ccCCccCCeeEEEeccHHHHH--
Confidence 34789999999999999999994 78999999999999999843211111 123334579999999998884
Q ss_pred cCCCCCceeEEEeccccccccChhhH--HHHHHHHhccccCCcEEeccCcee
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESML--SSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l--~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
.-....||+||.......-.....+ ..+..-+.+.|+++|+++.+..+.
T Consensus 360 -r~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 360 -RTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred -HhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 3456699999964321111111111 345566789999999999665544
No 242
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.78 E-value=0.0002 Score=67.20 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.+||.||-|-|+..-++.++...+-+.|+..+..++..+.. |... ..+|.++.|.-++....
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~----gw~e-----------k~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDW----GWRE-----------KENVIILEGRWEDVLNT 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhc----cccc-----------ccceEEEecchHhhhcc
Confidence 68999999999999999999998776888899999988755543 4321 36889999988887543
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++++.||.|+-.. .-.+-+++..+...+.|+|||+|.+-
T Consensus 165 --L~d~~FDGI~yDT---y~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 165 --LPDKHFDGIYYDT---YSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred --ccccCcceeEeec---hhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 5678899999543 32344677778889999999999975
No 243
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.75 E-value=0.00051 Score=69.76 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc----C-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~----G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+...|.... .++.+|+|+|||+|.-+..+.++ + ....++||+|..+++.+.+.+....+.
T Consensus 65 ~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p------------ 130 (319)
T TIGR03439 65 KHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS------------ 130 (319)
T ss_pred HHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC------------
Confidence 3444554433 56779999999999854443332 2 247999999999999999888633321
Q ss_pred CCceEEEecchhhcccccCC--CCCceeEEEecccccccc--ChhhHHHHHHHHhc-cccCCcEEec
Q 010913 359 AGKMEVVQGMVEELGESMQI--QPHSVDVLVSEWMGYCLL--YESMLSSVLFARDQ-WLKPGGAILP 420 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~--~~~~fDvIvs~~~~~~l~--~~~~l~~vL~~~~r-~LkpgG~li~ 420 (497)
.=.+.-+.|+..+.-.-++- ......+|+. +|..+. .......+|..+.+ .|+|||.|++
T Consensus 131 ~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 131 HVRCAGLLGTYDDGLAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CeEEEEEEecHHHHHhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 01344488888664211111 1234566664 333333 34556789999999 9999999985
No 244
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.69 E-value=2.7e-05 Score=65.82 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=44.5
Q ss_pred EEEcCCCCHhHHHHHHc----CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 302 MDIGCGTGILSLFAAQA----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 302 LDvGCGtG~ls~~la~~----G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
|+||+..|..+..+++. +..+++++|..+. .+.+++.++..++ .++++++.++..+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-------------~~~~~~~~g~s~~~l~~-- 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-------------SDRVEFIQGDSPDFLPS-- 64 (106)
T ss_dssp --------------------------EEEESS-------------GGG--------------BTEEEEES-THHHHHH--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-------------CCeEEEEEcCcHHHHHH--
Confidence 68999999988887765 2237999999995 3334444444444 35799999998766322
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++..++|+|+.... +..+.....+..+.+.|+|||+++++
T Consensus 65 ~~~~~~dli~iDg~----H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 65 LPDGPIDLIFIDGD----HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HHH--EEEEEEES-------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCCCEEEEEECCC----CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22578999996531 12245566788889999999999854
No 245
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.69 E-value=0.00025 Score=63.44 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=59.8
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHH-----cCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQ-----AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~-----~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
...+..+|+|+|||.|.+++.++. ....+|+|||.++..++.|.++.+..+.. ...++.++.++
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ 90 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD-----------LEKRLSFIQGD 90 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch-----------hhccchhhccc
Confidence 346778999999999999999999 53349999999999999999988776521 12467777777
Q ss_pred hhhcccccCCCCCceeEEEe
Q 010913 369 VEELGESMQIQPHSVDVLVS 388 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs 388 (497)
+.... .....+++++
T Consensus 91 ~~~~~-----~~~~~~~~vg 105 (141)
T PF13679_consen 91 IADES-----SSDPPDILVG 105 (141)
T ss_pred hhhhc-----ccCCCeEEEE
Confidence 66542 2556777774
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.68 E-value=0.00043 Score=69.23 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCC-HhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCceEEEecchh-hcc
Q 010913 298 GAVVMDIGCGTG-ILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEVVQGMVE-ELG 373 (497)
Q Consensus 298 ~~~VLDvGCGtG-~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~i~~i~gd~~-~l~ 373 (497)
..++||||+|.. +..+..++. |. +++|+|+++..++.|++++..| +| .++|+++...-. .+-
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L-------------~~~I~l~~~~~~~~i~ 168 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNL-------------ESRIELRKQKNPDNIF 168 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T--------------TTTEEEEE--ST-SST
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhcccc-------------ccceEEEEcCCccccc
Confidence 578999999986 556666665 77 9999999999999999999999 88 468988765322 111
Q ss_pred cccCCCCCceeEEEecccccc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYC 394 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~ 394 (497)
..+..+.+.||+.+|++.+|.
T Consensus 169 ~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 169 DGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp TTSTT--S-EEEEEE-----S
T ss_pred hhhhcccceeeEEecCCcccc
Confidence 112233568999999986654
No 247
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.66 E-value=0.00042 Score=69.11 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=44.8
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDN 343 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~ 343 (497)
....|......+.+.+|||+|||+|..+..+... ....+++||.|+.|++.++..+...
T Consensus 21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 3344444445578899999999999876665554 3568999999999999999887543
No 248
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.64 E-value=0.00022 Score=77.70 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcC---------CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAG---------ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G---------~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
.+.+|||.|||+|.+...+++.. ...++|+|+++.++..|+.++...+. ..+.+..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--------------~~~~i~~~ 96 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--------------LEINVINF 96 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--------------CCceeeec
Confidence 45699999999999988877642 14789999999999999988765541 12344444
Q ss_pred chhhccccc-CCCCCceeEEEeccc
Q 010913 368 MVEELGESM-QIQPHSVDVLVSEWM 391 (497)
Q Consensus 368 d~~~l~~~l-~~~~~~fDvIvs~~~ 391 (497)
+........ .-..++||+||++++
T Consensus 97 d~l~~~~~~~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 97 NSLSYVLLNIESYLDLFDIVITNPP 121 (524)
T ss_pred ccccccccccccccCcccEEEeCCC
Confidence 433211000 012357999999974
No 249
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=3e-05 Score=75.89 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
..|..++|+|||.|-.... .+...++|.|.+...+..|++. +......+|+..+
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~--------------------~~~~~~~ad~l~~--- 97 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS--------------------GGDNVCRADALKL--- 97 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC--------------------CCceeehhhhhcC---
Confidence 3489999999999965421 1233799999999888766643 1226777888886
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
|+...+||.+++..+.+.|........+++++.|.|+|||..+
T Consensus 98 -p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 98 -PFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred -CCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 5889999999987766667667777899999999999999966
No 250
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00022 Score=67.27 Aligned_cols=107 Identities=25% Similarity=0.279 Sum_probs=70.2
Q ss_pred HHHhCCCC-CCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 288 AILENPSL-MKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 288 ~i~~~~~~-~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.|.....+ .++.+|+|+|+.+|..+..+++. |. .+|+|||+.|.-. -.+|.+
T Consensus 35 el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-------------------------~~~V~~ 89 (205)
T COG0293 35 ELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-------------------------IPGVIF 89 (205)
T ss_pred HHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-------------------------CCCceE
Confidence 34333343 46799999999999999999988 44 3599999987311 135899
Q ss_pred Eecchhhcccc----cCCCCCceeEEEeccccccc-----cC---hhhHHHHHHHHhccccCCcEEe
Q 010913 365 VQGMVEELGES----MQIQPHSVDVLVSEWMGYCL-----LY---ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 365 i~gd~~~l~~~----l~~~~~~fDvIvs~~~~~~l-----~~---~~~l~~vL~~~~r~LkpgG~li 419 (497)
+++|+..-+.. ..+....+|+|+|......- .| ..-...++.-+..+|+|||.++
T Consensus 90 iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 90 LQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred EeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 99998654310 11335568999987532110 11 1112344555678999999987
No 251
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.57 E-value=0.00058 Score=67.67 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCCCHh-HHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHH-hCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 297 KGAVVMDIGCGTGIL-SLFAAQA-GA-SRVIAVEASEKMAAVATQIAK-DNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 297 ~~~~VLDvGCGtG~l-s~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~-~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+.+|+=||||.=-+ ++.+++. |. ..|+++|+++.+++.|++.+. ..|+ ..++.|+.+|+.+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-------------~~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-------------SKRMSFITADVLDV 186 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--------------SSEEEEES-GGGG
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-------------cCCeEEEecchhcc
Confidence 457999999998554 5556654 43 379999999999999999887 5566 36899999999876
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
. ..-..||+|+...+ +-........+|..+.+.++||+.++
T Consensus 187 ~----~dl~~~DvV~lAal--Vg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 187 T----YDLKEYDVVFLAAL--VGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp -----GG----SEEEE-TT---S----SHHHHHHHHHHHS-TTSEEE
T ss_pred c----cccccCCEEEEhhh--cccccchHHHHHHHHHhhCCCCcEEE
Confidence 4 33468999985331 11223467889999999999999987
No 252
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.45 E-value=0.00077 Score=69.24 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=88.6
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
+...+|.+|||+.+..|.=+.++|.. +.+-|+|.|.+..-+...+.++.+.|+ .+..++..|..
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--------------~ntiv~n~D~~ 302 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV--------------TNTIVSNYDGR 302 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC--------------CceEEEccCcc
Confidence 45678999999999999877777765 556899999999999999999999997 46667777776
Q ss_pred hcccccCCCCCceeEEEeccc--c--c---------------cccChhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 371 ELGESMQIQPHSVDVLVSEWM--G--Y---------------CLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~--~--~---------------~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
++.... +++ +||-|+.... + . ...+......+|..+..+++|||+|+-++|++..
T Consensus 303 ef~~~~-~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 303 EFPEKE-FPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred cccccc-cCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 653221 444 8999985421 1 0 0112233467788889999999999999998743
No 253
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.00051 Score=67.96 Aligned_cols=116 Identities=21% Similarity=0.172 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCC-CCCC--------------------C----CCC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDND-FWWD--------------------R----PQS 352 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~g-l~~~--------------------~----~~~ 352 (497)
..+||--|||.|+++..+|..|. .+-|-+.|--|+- +...+-.+. ..+. + ++.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli-~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLI-CSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHH-HHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 46899999999999999999999 7899999998874 333222111 0000 0 011
Q ss_pred CC--CCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 353 EG--NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 353 ~~--~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. .+...+...+..||+.+.-.. +-..+.+|+|+.++ ++-...+.-..|..+.+.|||||+.+
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~-s~~~~~~d~VvTcf---FIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGT-SSGAGSYDVVVTCF---FIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred cccccCCCCCCccccccceeEEecC-cCCCCccceEEEEE---EeechHHHHHHHHHHHHhccCCcEEE
Confidence 11 122233445566777665310 11234699999765 55555677889999999999999987
No 254
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.0013 Score=69.04 Aligned_cols=102 Identities=21% Similarity=0.326 Sum_probs=79.4
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
-++|-+|||.-.++..+-+.|...|+.+|.|+..++.+....... ..-+.+...++..+. +
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~---------------~~~~~~~~~d~~~l~----f 110 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE---------------RPEMQMVEMDMDQLV----F 110 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC---------------CcceEEEEecchhcc----C
Confidence 389999999999999999999999999999998887665543211 245788899988874 8
Q ss_pred CCCceeEEEeccccccccC-hh------hHHHHHHHHhccccCCcEEe
Q 010913 379 QPHSVDVLVSEWMGYCLLY-ES------MLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l~~-~~------~l~~vL~~~~r~LkpgG~li 419 (497)
+.++||+|+-..-...++. +. -....+.++.|+|+|||+.+
T Consensus 111 edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 111 EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 9999999998654333332 21 23456788999999999976
No 255
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0014 Score=61.12 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=83.4
Q ss_pred HHHHHHHh---CCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 284 ~y~~~i~~---~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
....+|+. +.++.+|.+||=+|+.+|...-..+.- |.+.|+||+.|+.+.......+.+.
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---------------- 123 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---------------- 123 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----------------
Confidence 34555554 456788999999999999987777776 7678999999999877666655443
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.||-.+.+|+....... .-.+.+|+|+... ....+..-+...+...||+||.+++.
T Consensus 124 ~Ni~PIL~DA~~P~~Y~-~~Ve~VDviy~DV-----AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 124 PNIIPILEDARKPEKYR-HLVEKVDVIYQDV-----AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred CCceeeecccCCcHHhh-hhcccccEEEEec-----CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 47888888886643222 2356799999753 22334455667889999999987743
No 256
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.33 E-value=0.0022 Score=60.85 Aligned_cols=105 Identities=24% Similarity=0.304 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 280 ~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.|.....+++ ..+.++.||||-.|.+..+|.+. .++.+++.|+++..++.|.+++.++++.
T Consensus 5 ~RL~~va~~V------~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~------------ 66 (226)
T COG2384 5 KRLTTVANLV------KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS------------ 66 (226)
T ss_pred HHHHHHHHHH------HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc------------
Confidence 4555565665 34556999999999999999998 5689999999999999999999999984
Q ss_pred CCceEEEecchhhcccccCCC-CCceeEEEeccccccccChhhHHHHHHHHhcccc
Q 010913 359 AGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLK 413 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lk 413 (497)
.++++..+|.... +. ...+|+|+...||-.+ ...+|.+....|+
T Consensus 67 -~~i~vr~~dgl~~-----l~~~d~~d~ivIAGMGG~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 67 -ERIDVRLGDGLAV-----LELEDEIDVIVIAGMGGTL-----IREILEEGKEKLK 111 (226)
T ss_pred -ceEEEeccCCccc-----cCccCCcCEEEEeCCcHHH-----HHHHHHHhhhhhc
Confidence 6899999998553 34 4489999988776532 3456666655555
No 257
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.32 E-value=0.00048 Score=64.14 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
+...+.|||||-|.+.+.++.. +..-++|+++-....+..+++++..+-.. ....-.++.+.+.+...+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~-------a~~~~~ni~vlr~namk~l-- 130 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTS-------AEGQYPNISVLRTNAMKFL-- 130 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccc-------cccccccceeeeccchhhc--
Confidence 4457899999999999999988 56789999999999999988887654210 0011246777777665542
Q ss_pred cCCCCCceeEEEeccccccccChhh----------HHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESM----------LSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~----------l~~vL~~~~r~LkpgG~li 419 (497)
++-|---...-|.+++....- -..++.+..-+|++||.++
T Consensus 131 ----pn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~y 180 (249)
T KOG3115|consen 131 ----PNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILY 180 (249)
T ss_pred ----cchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEE
Confidence 222222222223223221110 1346667778899999987
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.27 E-value=0.0015 Score=65.68 Aligned_cols=89 Identities=16% Similarity=0.280 Sum_probs=69.9
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
.+.++..+.+.+|.+++|.=+|.|..|..+++. +..+|+|+|.++.+++.|++.+...+ +++.+
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~---------------~R~~~ 73 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE---------------GRVVL 73 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC---------------CcEEE
Confidence 345555666678899999999999999999987 44799999999999999998875432 58999
Q ss_pred EecchhhcccccC-CCCCceeEEEec
Q 010913 365 VQGMVEELGESMQ-IQPHSVDVLVSE 389 (497)
Q Consensus 365 i~gd~~~l~~~l~-~~~~~fDvIvs~ 389 (497)
++++..++...+. ....++|.|+..
T Consensus 74 i~~nF~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 74 IHDNFANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred EeCCHHHHHHHHHhcCCCcccEEEEe
Confidence 9999988754321 133579999865
No 259
>PHA01634 hypothetical protein
Probab=97.11 E-value=0.0011 Score=57.27 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCC
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl 345 (497)
.++++|+|||++-|-.++.++-+||+.|+++++++...+..+++++.+.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 57899999999999999999999999999999999999999998877654
No 260
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.02 E-value=0.0049 Score=62.35 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=71.3
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCC
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~ 378 (497)
...+|+|.|.|..+..+... ..+|-+|++....+-.+...+. . .|..+-||..+- .
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~-----------------gV~~v~gdmfq~-----~ 234 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P-----------------GVEHVAGDMFQD-----T 234 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C-----------------Ccceeccccccc-----C
Confidence 78999999999999888885 5579999999877765555542 2 367777877553 2
Q ss_pred CCCceeEEEeccccccccCh--hhHHHHHHHHhccccCCcEEecc
Q 010913 379 QPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 379 ~~~~fDvIvs~~~~~~l~~~--~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
| +-|+|+.-| +|++. .+..++|.++...|+|||.|++-
T Consensus 235 P--~~daI~mkW---iLhdwtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 235 P--KGDAIWMKW---ILHDWTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred C--CcCeEEEEe---ecccCChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 2 356999666 55554 45779999999999999998843
No 261
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.93 E-value=0.00025 Score=66.14 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=72.7
Q ss_pred HHHHHHHHhCC-CC-CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 283 DSYRQAILENP-SL-MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 283 ~~y~~~i~~~~-~~-~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
+.+++.+.... .. ..+.++||+|+|.|-++..++.. ...|+|.+.|..|....++. +. .
T Consensus 96 ~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y--------------n 156 (288)
T KOG3987|consen 96 EQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY--------------N 156 (288)
T ss_pred HHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC--------------c
Confidence 45666665542 22 34689999999999999988765 45899999999988755543 22 1
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccC-CcEEecc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKP-GGAILPD 421 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkp-gG~li~~ 421 (497)
.+..+ ++. -.+-++|+|.|-. .|-..-++-.+|..+..+|+| +|.++..
T Consensus 157 Vl~~~-----ew~----~t~~k~dli~clN---lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 VLTEI-----EWL----QTDVKLDLILCLN---LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred eeeeh-----hhh----hcCceeehHHHHH---HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 12211 111 1234799999744 333334677899999999999 8887744
No 262
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.92 E-value=0.0018 Score=64.64 Aligned_cols=101 Identities=22% Similarity=0.273 Sum_probs=68.6
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc-
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM- 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd- 368 (497)
.....+|.+||-+|+|+ |.+++..|++ |+++|+.+|+++.-++.|++ + |. ..+......
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga--------------~~~~~~~~~~ 225 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA--------------TVTDPSSHKS 225 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC--------------eEEeeccccc
Confidence 34568899999999997 8899999998 99999999999999999987 3 32 111111111
Q ss_pred -hhhccccc--CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 -VEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 -~~~l~~~l--~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+.+.+ .+....+|+.+... -....+++....|++||.++
T Consensus 226 ~~~~~~~~v~~~~g~~~~d~~~dCs---------G~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 226 SPQELAELVEKALGKKQPDVTFDCS---------GAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred cHHHHHHHHHhhccccCCCeEEEcc---------CchHHHHHHHHHhccCCEEE
Confidence 11111000 12234589888643 23456667778899999976
No 263
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.90 E-value=0.0043 Score=61.02 Aligned_cols=111 Identities=21% Similarity=0.204 Sum_probs=69.2
Q ss_pred CEEEEEcCCC--CHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 299 AVVMDIGCGT--GILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.-.||||||- -...-.+|+. +..+|+-||..+..+..++..+..+. ..+..++++|+.+...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--------------~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--------------RGRTAYVQADLRDPEA 135 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--------------TSEEEEEE--TT-HHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--------------CccEEEEeCCCCCHHH
Confidence 5699999993 3355566665 55699999999999999999886653 1348999999977653
Q ss_pred ccC-------C-CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 375 SMQ-------I-QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 375 ~l~-------~-~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
.+. + ....+-+++.. +.+++....++..++..+...|.||..|+++..+
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~-vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVA-VLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred HhcCHHHHhcCCCCCCeeeeeee-eeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 221 1 13445455543 3445566678999999999999999999966554
No 264
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.90 E-value=0.0061 Score=54.16 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccC----
Q 010913 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY---- 397 (497)
Q Consensus 322 ~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~---- 397 (497)
+|+|+|+-+.+++.+++++...++. ++++++...-+.+...+ +.+++|+++-+ +||.-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-------------~~v~li~~sHe~l~~~i--~~~~v~~~iFN-LGYLPggDk~i 64 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-------------DRVTLILDSHENLDEYI--PEGPVDAAIFN-LGYLPGGDKSI 64 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-------------SGEEEEES-GGGGGGT----S--EEEEEEE-ESB-CTS-TTS
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-------------CcEEEEECCHHHHHhhC--ccCCcCEEEEE-CCcCCCCCCCC
Confidence 6999999999999999999999873 58999999998887432 23589999866 4553211
Q ss_pred ---hhhHHHHHHHHhccccCCcEEe
Q 010913 398 ---ESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 398 ---~~~l~~vL~~~~r~LkpgG~li 419 (497)
...--..+..+.++|+|||++.
T Consensus 65 ~T~~~TTl~Al~~al~lL~~gG~i~ 89 (140)
T PF06962_consen 65 TTKPETTLKALEAALELLKPGGIIT 89 (140)
T ss_dssp B--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred CcCcHHHHHHHHHHHHhhccCCEEE
Confidence 2223456777889999999987
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.85 E-value=0.0012 Score=69.54 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 281 RTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 281 r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
|...|...+-.......-..|+|..+|.|.++..|...+. ..+-.-+..-.-....+...||
T Consensus 349 ~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~V---WVMNVVP~~~~ntL~vIydRGL--------------- 410 (506)
T PF03141_consen 349 RVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPV---WVMNVVPVSGPNTLPVIYDRGL--------------- 410 (506)
T ss_pred HHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCc---eEEEecccCCCCcchhhhhccc---------------
Confidence 3444544442122222336899999999999999987754 2222222111111223333343
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
|- -..++.+..+.-+.+||+|.+..+......--.+..+|-+++|.|+|||.+++
T Consensus 411 -IG----~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 411 -IG----VYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred -ch----hccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 22 22333333456789999999876443434445678899999999999999985
No 266
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.84 E-value=0.0026 Score=59.05 Aligned_cols=114 Identities=25% Similarity=0.287 Sum_probs=73.5
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHH------HHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAA------VATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~------~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
++....+.+|.+|+|+-.|.|.++..++.. |. +.|+++-..+...- ..+...+.... .
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~--------------a 105 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY--------------A 105 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh--------------h
Confidence 344567889999999999999999999987 44 47888766553211 11111111221 2
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEecc----ccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEW----MGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~----~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
+++.+-.....+ .+++..|+++... |..-..+......+..++++.|||||+++..
T Consensus 106 N~e~~~~~~~A~-----~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 106 NVEVIGKPLVAL-----GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred hhhhhCCccccc-----CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 445555544444 2566777776532 2223345566788999999999999998743
No 267
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.003 Score=63.45 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=73.9
Q ss_pred hHHhhhcchhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCC
Q 010913 271 IHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWD 348 (497)
Q Consensus 271 ih~~ml~d~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~ 348 (497)
||..|.....-..+-.+.+.....-+.+++|||+|.|.|.....+-.. -...++.++.|+..-++.......-+.
T Consensus 87 ias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--- 163 (484)
T COG5459 87 IASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--- 163 (484)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc---
Confidence 344444333322233334444445677889999999999876655544 225788999998665554444332222
Q ss_pred CCCCCCCCCCCCceEEEecchhhcccccCCC-CCceeEEEeccccccccCh---hhHHHHHHHHhccccCCcEEec
Q 010913 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLYE---SMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 349 ~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~-~~~fDvIvs~~~~~~l~~~---~~l~~vL~~~~r~LkpgG~li~ 420 (497)
.......+++..-. ++++ ...|++|+ +..-|++. ..+...+..+..+++|||.|++
T Consensus 164 -----------~~td~r~s~vt~dR--l~lp~ad~ytl~i---~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 164 -----------EKTDWRASDVTEDR--LSLPAADLYTLAI---VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred -----------ccCCCCCCccchhc--cCCCccceeehhh---hhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 11222223332211 1232 45677777 33344432 2344577888899999999884
No 268
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.76 E-value=0.0022 Score=61.93 Aligned_cols=96 Identities=22% Similarity=0.167 Sum_probs=55.6
Q ss_pred HHhCCCCCCCC--EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe
Q 010913 289 ILENPSLMKGA--VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (497)
Q Consensus 289 i~~~~~~~~~~--~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~ 366 (497)
|.+..++.+|. +|||.-+|-|.-++.+|..|+ +|+++|.|+.+....+.-++...-.. ........+|++++
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~-----~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDP-----ELLAEAMRRIQLIH 138 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHST-----TTHHHHHHHEEEEE
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCc-----HhHHHHHhCCEEEc
Confidence 44445556654 999999999999999998898 89999999988766654433211000 00000124899999
Q ss_pred cchhhcccccCCCCCceeEEEeccccc
Q 010913 367 GMVEELGESMQIQPHSVDVLVSEWMGY 393 (497)
Q Consensus 367 gd~~~l~~~l~~~~~~fDvIvs~~~~~ 393 (497)
+|..++- ..+..+||||+..+|+-
T Consensus 139 ~d~~~~L---~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 139 GDALEYL---RQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp S-CCCHC---CCHSS--SEEEE--S--
T ss_pred CCHHHHH---hhcCCCCCEEEECCCCC
Confidence 9998873 34578999999988754
No 269
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.75 E-value=0.021 Score=55.12 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=64.1
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
..++....-..|++||-+|=+. ..|+.+|-. ..++|+.+|+++++++.-++.+++.|+ +|+.+
T Consensus 34 a~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl---------------~i~~~ 97 (243)
T PF01861_consen 34 AALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL---------------PIEAV 97 (243)
T ss_dssp HHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----------------EEEE
T ss_pred HHHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC---------------ceEEE
Confidence 3344444456899999999555 344444443 346999999999999999999999987 59999
Q ss_pred ecchhhcccccCCC---CCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 366 QGMVEELGESMQIQ---PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 366 ~gd~~~l~~~l~~~---~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
+.|+.+. +| .++||++++.+. |. ...+.-++.+....||..|.
T Consensus 98 ~~DlR~~-----LP~~~~~~fD~f~TDPP-yT---~~G~~LFlsRgi~~Lk~~g~ 143 (243)
T PF01861_consen 98 HYDLRDP-----LPEELRGKFDVFFTDPP-YT---PEGLKLFLSRGIEALKGEGC 143 (243)
T ss_dssp ---TTS--------TTTSS-BSEEEE----SS---HHHHHHHHHHHHHTB-STT-
T ss_pred Eeccccc-----CCHHHhcCCCEEEeCCC-CC---HHHHHHHHHHHHHHhCCCCc
Confidence 9998774 44 479999999862 22 35667788888888887663
No 270
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.73 E-value=0.0068 Score=63.12 Aligned_cols=102 Identities=20% Similarity=0.143 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
.+.+|||.=+|+|+=++..++. |..+|++-|+|+.+++..+++++.|++.. +++++.+.|+..+-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~------------~~~~v~~~DAn~ll- 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED------------ERIEVSNMDANVLL- 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG------------CCEEEEES-HHHHH-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC------------ceEEEehhhHHHHh-
Confidence 3568999999999988888876 66899999999999999999999999842 26899999998872
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
......||+|=..+.| .+..+|..+.+.++.||+|.+
T Consensus 116 --~~~~~~fD~IDlDPfG-------Sp~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 116 --YSRQERFDVIDLDPFG-------SPAPFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp --CHSTT-EEEEEE--SS---------HHHHHHHHHHEEEEEEEEE
T ss_pred --hhccccCCEEEeCCCC-------CccHhHHHHHHHhhcCCEEEE
Confidence 1257889999876643 345688888889999999884
No 271
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.0012 Score=60.90 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-chhh
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-MVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-d~~~ 371 (497)
+.|+.+|||+||.+|..+..+.+. +.+.|+|||+-... . ...++++.+ |+.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p-----------------~~Ga~~i~~~dvtd 121 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------P-----------------PEGATIIQGNDVTD 121 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------C-----------------CCCcccccccccCC
Confidence 467999999999999999998887 45789999985411 1 123455555 4433
Q ss_pred ccc----ccCCCCCceeEEEecccc----ccccChhh----HHHHHHHHhccccCCcEEe
Q 010913 372 LGE----SMQIQPHSVDVLVSEWMG----YCLLYESM----LSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~----~l~~~~~~fDvIvs~~~~----~~l~~~~~----l~~vL~~~~r~LkpgG~li 419 (497)
... ...+|...+|+|+|.+.. .-+..... -.+++.-....++|+|.++
T Consensus 122 p~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 122 PETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred HHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 210 012567899999997421 11111111 1344555567788999987
No 272
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.012 Score=52.25 Aligned_cols=104 Identities=16% Similarity=0.106 Sum_probs=74.6
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+...+..+.+|+|.|.|.+-+.+++.|....+|+++++-.+.+++-..-+.|. .+...|.+.|+-
T Consensus 66 Sll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-------------~k~trf~Rkdlw 132 (199)
T KOG4058|consen 66 SLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-------------AKSTRFRRKDLW 132 (199)
T ss_pred HHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-------------ccchhhhhhhhh
Confidence 3334455578999999999999999999987999999999999998887777776 357888888887
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+ +.+-.+=+|+ .-++++..+-..+..-+..+..++
T Consensus 133 K~d----l~dy~~vviF--------gaes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 133 KVD----LRDYRNVVIF--------GAESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred hcc----ccccceEEEe--------ehHHHHhhhHHHHHhhCcCCCeEE
Confidence 764 4343444444 223444445555555666666666
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.47 E-value=0.013 Score=59.79 Aligned_cols=93 Identities=23% Similarity=0.324 Sum_probs=62.9
Q ss_pred CCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
....||.+|+-+|+| .|.++..+|++ |+ +|+++|.|+.-.+.|++. | .-.++...-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~l----G----------------Ad~~i~~~~~ 220 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKL----G----------------ADHVINSSDS 220 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHh----C----------------CcEEEEcCCc
Confidence 456889999999999 24578888885 96 999999999988888776 2 2234443211
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.. ..-.+.||+|+... . ...+....+.|++||.++
T Consensus 221 ~~~---~~~~~~~d~ii~tv--------~--~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 221 DAL---EAVKEIADAIIDTV--------G--PATLEPSLKALRRGGTLV 256 (339)
T ss_pred hhh---HHhHhhCcEEEECC--------C--hhhHHHHHHHHhcCCEEE
Confidence 111 01122499999543 1 334555668899999998
No 274
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.41 E-value=0.0097 Score=56.53 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=61.4
Q ss_pred CEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC-
Q 010913 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ- 377 (497)
Q Consensus 299 ~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~- 377 (497)
.++|||||=+..... ...+.-.|++||+++. .-.+.+.|+.+.+ +|
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns~-----------------------------~~~I~qqDFm~rp--lp~ 99 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ-----------------------------HPGILQQDFMERP--LPK 99 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCCC-----------------------------CCCceeeccccCC--CCC
Confidence 699999987543322 2334447999999861 1234566776653 11
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~ 417 (497)
.+.++||+|+++.+..++........++..+.++|+|+|.
T Consensus 100 ~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 100 NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 2367999999887666666677778999999999999999
No 275
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.20 E-value=0.03 Score=57.85 Aligned_cols=96 Identities=26% Similarity=0.355 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-c-hhh
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-M-VEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-d-~~~ 371 (497)
.++.+|+-+|||+ |.++..+++. |+++|+++|.++.-++.|++.... +.+..... + ...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----------------~~~~~~~~~~~~~~ 229 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-----------------DVVVNPSEDDAGAE 229 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-----------------eEeecCccccHHHH
Confidence 4455999999998 8888888887 999999999999999988875311 11111111 1 111
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
... ......+|+++=. .+ ....+..+.++++|||.++
T Consensus 230 ~~~--~t~g~g~D~vie~-~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 230 ILE--LTGGRGADVVIEA-VG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred HHH--HhCCCCCCEEEEC-CC--------CHHHHHHHHHHhcCCCEEE
Confidence 100 0123479999843 22 2447778889999999987
No 276
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.039 Score=56.33 Aligned_cols=120 Identities=16% Similarity=0.112 Sum_probs=78.0
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcCC-----CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAGA-----SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G~-----~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
+.+.+|.+|||+.+..|.=+..+.++.. ..|++-|.++.-+......+.... ..++.+...
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~--------------~~~~~v~~~ 216 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP--------------SPNLLVTNH 216 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC--------------Ccceeeecc
Confidence 4568999999999999998877777622 279999999887776666553321 234444444
Q ss_pred chhhccccc-----CCCCCceeEEEeccc--ccccc-C-----------------hhhHHHHHHHHhccccCCcEEeccC
Q 010913 368 MVEELGESM-----QIQPHSVDVLVSEWM--GYCLL-Y-----------------ESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 368 d~~~l~~~l-----~~~~~~fDvIvs~~~--~~~l~-~-----------------~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
++...+... +.....||-|++... +...+ . ..-...+|.+-.++|||||+++-+|
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 444332211 124457999887531 11110 0 1112357788889999999999999
Q ss_pred ceeE
Q 010913 423 ATMF 426 (497)
Q Consensus 423 ~~~~ 426 (497)
|++.
T Consensus 297 CSLn 300 (375)
T KOG2198|consen 297 CSLN 300 (375)
T ss_pred cCCC
Confidence 9873
No 277
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.13 E-value=0.0027 Score=62.56 Aligned_cols=98 Identities=26% Similarity=0.306 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCCHhHH-HHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 297 KGAVVMDIGCGTGILSL-FAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~-~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+.+|+|+-+|-|.+++ ++.++||+.|+|+|.+|-.++..++.+..|+.. .+..++.||-...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-------------~r~~i~~gd~R~~--- 257 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-------------DRCRITEGDNRNP--- 257 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-------------HHHHhhhcccccc---
Confidence 45899999999999999 999999999999999999999999999888763 4666667766554
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcE-Ee
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA-IL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~-li 419 (497)
-+....|-|.. |..-..+..... +.++|||.|- ++
T Consensus 258 --~~~~~AdrVnL---GLlPSse~~W~~----A~k~Lk~eggsil 293 (351)
T KOG1227|consen 258 --KPRLRADRVNL---GLLPSSEQGWPT----AIKALKPEGGSIL 293 (351)
T ss_pred --Cccccchheee---ccccccccchHH----HHHHhhhcCCcEE
Confidence 45677888873 221112222232 3456777554 54
No 278
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.12 E-value=0.02 Score=56.66 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=85.4
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+..+++||-||.|.|......+++ -...+.-+|+....++..++.+...... ....+|.+.-||...+
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g----------y~~~~v~l~iGDG~~f 187 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG----------YEGKKVKLLIGDGFLF 187 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc----------cCCCceEEEeccHHHH
Confidence 3456799999999999999998888 3468999999999999988877653211 1247899999998776
Q ss_pred ccccCCCCCceeEEEeccccccccChhh-HHHHHHHHhccccCCcEEeccCcee
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESM-LSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~-l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
-+ ..+.++||||+.+.-........- ....+..+.+.|||||+++.....+
T Consensus 188 l~--~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 188 LE--DLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred HH--HhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 43 234789999996531111111121 2456677889999999998554333
No 279
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.08 E-value=0.026 Score=54.83 Aligned_cols=85 Identities=15% Similarity=0.161 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 283 ~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
+.+.+++... +.++.+|+|||||.=-+++.+... +...++|+|++..+++.....+...+. +
T Consensus 93 d~fY~~if~~--~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~---------------~ 155 (251)
T PF07091_consen 93 DEFYDEIFGR--IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV---------------P 155 (251)
T ss_dssp HHHHHHHCCC--S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----------------C
T ss_pred HHHHHHHHhc--CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC---------------C
Confidence 3445555443 355899999999999998877655 224999999999999999998888775 5
Q ss_pred eEEEecchhhcccccCCCCCceeEEEec
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSE 389 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~ 389 (497)
..+...|+..- .+....|+.+..
T Consensus 156 ~~~~v~Dl~~~-----~~~~~~DlaLll 178 (251)
T PF07091_consen 156 HDARVRDLLSD-----PPKEPADLALLL 178 (251)
T ss_dssp EEEEEE-TTTS-----HTTSEESEEEEE
T ss_pred cceeEeeeecc-----CCCCCcchhhHH
Confidence 67777776553 367789999843
No 280
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.95 E-value=0.011 Score=59.45 Aligned_cols=118 Identities=21% Similarity=0.203 Sum_probs=80.3
Q ss_pred HHHHhC-CCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHH-------HHHHHHhCCCCCCCCCCCCCCCC
Q 010913 287 QAILEN-PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV-------ATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 287 ~~i~~~-~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~-------A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+|..+ ....+|..|+|--.|||.+...+|.-|+ .|+|.|++-.++.. .+.+++..|..
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~------------ 263 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS------------ 263 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCc------------
Confidence 344444 4567899999999999999999999999 99999999988862 23455555532
Q ss_pred CCceEEEecchhhcccccCCCCCceeEEEeccccccccC-------------------------------hhhHHHHHHH
Q 010913 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY-------------------------------ESMLSSVLFA 407 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-------------------------------~~~l~~vL~~ 407 (497)
+.-+.++.+|..+.. + -....||.|||.+. |.+.- ...+..+|.-
T Consensus 264 ~~fldvl~~D~sn~~--~-rsn~~fDaIvcDPP-YGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~f 339 (421)
T KOG2671|consen 264 SQFLDVLTADFSNPP--L-RSNLKFDAIVCDPP-YGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCF 339 (421)
T ss_pred chhhheeeecccCcc--h-hhcceeeEEEeCCC-cchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHh
Confidence 134567777776643 1 12558999999862 22100 1223445555
Q ss_pred HhccccCCcEEecc
Q 010913 408 RDQWLKPGGAILPD 421 (497)
Q Consensus 408 ~~r~LkpgG~li~~ 421 (497)
..+.|..||++++-
T Consensus 340 ss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 340 SSRRLVDGGRLVFW 353 (421)
T ss_pred hHhhhhcCceEEEe
Confidence 67889999998843
No 281
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.85 E-value=0.028 Score=54.88 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEe---cchhhcc
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ---GMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~---gd~~~l~ 373 (497)
.+.+||++|+|||..++.+|..+...|.-.|....+.. .+.+...++.. .+..+..+.+.. +...+..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~--------l~~~g~~v~v~~L~Wg~~~~~~ 156 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIA--------LNQLGGSVIVAILVWGNALDVS 156 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhh--------hhhcCCceeEEEEecCCcccHh
Confidence 46789999999999999999874448999998775443 44443333321 001111332222 2222222
Q ss_pred cccCCCCCc-eeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHS-VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~-fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+. +|+|++.- ++..++....++..+..+|..+|+++
T Consensus 157 ----~~~~~~~DlilasD---vvy~~~~~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 157 ----FRLPNPFDLILASD---VVYEEESFEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred ----hccCCcccEEEEee---eeecCCcchhHHHHHHHHHhcCCeEE
Confidence 22233 99999544 55566666777777888888888544
No 282
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.85 E-value=0.055 Score=53.91 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=71.2
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G--~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
+.+.++..+.+.++...+|.--|.|+.|..+.+.. .++++|+|.++.+++.|++++...+ +++
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---------------~r~ 75 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---------------GRV 75 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---------------CcE
Confidence 34556677778889999999999999999988873 3689999999999999999987764 599
Q ss_pred EEEecchhhcccccC-CCCCceeEEEec
Q 010913 363 EVVQGMVEELGESMQ-IQPHSVDVLVSE 389 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~-~~~~~fDvIvs~ 389 (497)
+++++++.++...++ ...+++|.|+..
T Consensus 76 ~~v~~~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 76 TLVHGNFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred EEEeCcHHHHHHHHHhcCCCceeEEEEe
Confidence 999999887753322 224578887743
No 283
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.81 E-value=0.035 Score=52.58 Aligned_cols=119 Identities=16% Similarity=0.254 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-----CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCC
Q 010913 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEG 354 (497)
Q Consensus 280 ~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-----G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~ 354 (497)
.-.-.|...|.+ .++.+|+++|.-.|+.++++|.. +..+|+|||+.-... .++.+....+
T Consensus 19 ~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~--------- 83 (206)
T PF04989_consen 19 QDMVAYQELIWE----LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPM--------- 83 (206)
T ss_dssp HHHHHHHHHHHH----H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG------------
T ss_pred HHHHHHHHHHHH----hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccc---------
Confidence 334456666655 35789999999999988887753 346999999964332 1222222233
Q ss_pred CCCCCCceEEEecchhhcccccCC----CCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 355 NINNAGKMEVVQGMVEELGESMQI----QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 355 ~~~~~~~i~~i~gd~~~l~~~l~~----~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
.++|++++|+..+.....+. ......+|+-.. . +........|.....+++||++++..
T Consensus 84 ----~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs---~-H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 84 ----SPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDS---S-HTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp -----TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred ----cCceEEEECCCCCHHHHHHHHHhhccCCceEEEECC---C-ccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 26899999998654311111 123445666432 1 22234556777799999999998743
No 284
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.80 E-value=0.043 Score=59.24 Aligned_cols=43 Identities=30% Similarity=0.369 Sum_probs=36.6
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..++.+|+-+|||. |..++..|+. |+ .|+++|.++.-++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 46799999999997 7788888877 98 89999999987776665
No 285
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.71 E-value=0.029 Score=53.79 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=72.0
Q ss_pred HHHHHH---hCCCCCCCCEEEEEcCCCCHhHHHHHHc-CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 010913 285 YRQAIL---ENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (497)
Q Consensus 285 y~~~i~---~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~ 359 (497)
+...|+ .+..+.+|.+||=+|+++|..--..+.. |. .-|+||+.|+..=......+++ .
T Consensus 141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------------R 204 (317)
T KOG1596|consen 141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------------R 204 (317)
T ss_pred HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------------c
Confidence 344443 4677899999999999999876666655 33 5799999997643322222211 1
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
.||..|.-|+....+. .....-+|+|++.. ..+....-+.-.....||+||.++++..
T Consensus 205 tNiiPIiEDArhP~KY-RmlVgmVDvIFaDv-----aqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 205 TNIIPIIEDARHPAKY-RMLVGMVDVIFADV-----AQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred CCceeeeccCCCchhe-eeeeeeEEEEeccC-----CCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 4566666666543211 12234688888753 1222233344456889999999985543
No 286
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.71 E-value=0.0038 Score=61.49 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=66.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT-QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~-~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
...|++|||+|||+|..++++...|+..|...|.|...+..-. .++..+-. .....+....-..+....+.++.
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~-----~~~~~~e~~~~~~i~~s~l~dg~ 188 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSH-----AGVEEKENHKVDEILNSLLSDGV 188 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchh-----hhhhhhhcccceeccccccccch
Confidence 4689999999999999999999999789999999987763111 00000000 00000011112222333111110
Q ss_pred cccCCCC--CceeEEEeccccccccChhhHHHH-HHHHhccccCCcEEecc
Q 010913 374 ESMQIQP--HSVDVLVSEWMGYCLLYESMLSSV-LFARDQWLKPGGAILPD 421 (497)
Q Consensus 374 ~~l~~~~--~~fDvIvs~~~~~~l~~~~~l~~v-L~~~~r~LkpgG~li~~ 421 (497)
-... ..||+|.+.-+.|.. .....+ +..+...++++|+++..
T Consensus 189 ---~~~t~~~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 189 ---FNHTERTHYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ---hhhccccchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhhhh
Confidence 0112 379999976655543 333333 55677888999988743
No 287
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.70 E-value=0.045 Score=57.15 Aligned_cols=108 Identities=24% Similarity=0.272 Sum_probs=66.9
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc-h
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM-V 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd-~ 369 (497)
..+.++.+||.+|||. |.++..+|++ |+.+|++++.++...+.+++.. +. ..+.....+ .
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~--------------~vi~~~~~~~~ 242 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA--------------ETINFEEVDDV 242 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc--------------EEEcCCcchHH
Confidence 4457889999999988 8888888887 7767999999998888777642 11 112211111 1
Q ss_pred -hhcccccCCCCCceeEEEeccccc------------cccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 -EELGESMQIQPHSVDVLVSEWMGY------------CLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 -~~l~~~l~~~~~~fDvIvs~~~~~------------~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. + .....+|+|+...-+. .+....+....+..+.+.|+|+|.++
T Consensus 243 ~~~l~~-~-~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 303 (386)
T cd08283 243 VEALRE-L-TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVS 303 (386)
T ss_pred HHHHHH-H-cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEE
Confidence 11110 0 1234699998642110 01111223557788889999999987
No 288
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.044 Score=55.95 Aligned_cols=99 Identities=21% Similarity=0.173 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
+.+|||.=+|||+=++..|.. |..+|+.-|+|+.+++.++++++.|.. ....++..|+..+-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~--------------~~~~v~n~DAN~lm~-- 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG--------------EDAEVINKDANALLH-- 116 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc--------------ccceeecchHHHHHH--
Confidence 789999999999988888877 666999999999999999999999843 355666688877631
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
-....||+|=..++|. +..++.++.+.++.||+|.+
T Consensus 117 -~~~~~fd~IDiDPFGS-------PaPFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 117 -ELHRAFDVIDIDPFGS-------PAPFLDAALRSVRRGGLLCV 152 (380)
T ss_pred -hcCCCccEEecCCCCC-------CchHHHHHHHHhhcCCEEEE
Confidence 1237899998666443 23466677777888999873
No 289
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.56 E-value=0.024 Score=56.56 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=52.1
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
+|+|+.||.|.++..+.++|+..|.++|+++.+++..+.+.. . .++.+|+.++.. ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-------------------~-~~~~~Di~~~~~---~~ 58 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-------------------N-KLIEGDITKIDE---KD 58 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-------------------C-CCccCccccCch---hh
Confidence 689999999999999999999889999999988776655531 1 256678777642 11
Q ss_pred -CCceeEEEecc
Q 010913 380 -PHSVDVLVSEW 390 (497)
Q Consensus 380 -~~~fDvIvs~~ 390 (497)
...+|+|+..+
T Consensus 59 ~~~~~D~l~~gp 70 (275)
T cd00315 59 FIPDIDLLTGGF 70 (275)
T ss_pred cCCCCCEEEeCC
Confidence 35699999754
No 290
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.0095 Score=62.63 Aligned_cols=106 Identities=21% Similarity=0.145 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.++.+|||.=|+||+-++..|+. |..+|++.|.++..+..-+++++.|+.. +.+...++|+..+-
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-------------~ive~~~~DA~~lM 174 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-------------DIVEPHHSDANVLM 174 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-------------hhcccccchHHHHH
Confidence 46678999999999999999887 7789999999999999999999998763 57778888876654
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEecc
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
-.-+-....||+|=..+.|. ...+|..+.+.++.||+|...
T Consensus 175 ~~~~~~~~~FDvIDLDPyGs-------~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 175 YEHPMVAKFFDVIDLDPYGS-------PSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred HhccccccccceEecCCCCC-------ccHHHHHHHHHhhcCCEEEEE
Confidence 22223357899998766432 345788888899999999843
No 291
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.36 E-value=0.074 Score=54.48 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=59.0
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+|.+||-+|||. |.++..+|++ |+.+|+++|.++.-++.|++ .|.. ..+..-..++.++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~-------------~vi~~~~~~~~~~ 229 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD-------------KLVNPQNDDLDHY 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc-------------EEecCCcccHHHH
Confidence 34688999999874 6677777777 88789999999987776654 2320 0011111122222
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
. ...+.+|+|+... + . ...+....++|+|||.++
T Consensus 230 ~----~~~g~~D~vid~~-G----~----~~~~~~~~~~l~~~G~iv 263 (343)
T PRK09880 230 K----AEKGYFDVSFEVS-G----H----PSSINTCLEVTRAKGVMV 263 (343)
T ss_pred h----ccCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 1 1123589998532 1 1 234556678899999988
No 292
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.32 E-value=0.023 Score=57.23 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=61.0
Q ss_pred HHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE
Q 010913 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (497)
Q Consensus 287 ~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i 365 (497)
+.++..+...++.+++|.--|.|+.|..+.+. +..+|+|+|.++.+++.|++++... .+++.++
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---------------~~r~~~~ 74 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---------------DDRFIFI 74 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---------------CTTEEEE
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---------------cceEEEE
Confidence 33444455678899999999999999999987 4479999999999999888776433 3689999
Q ss_pred ecchhhcccccC-C-CCCceeEEEec
Q 010913 366 QGMVEELGESMQ-I-QPHSVDVLVSE 389 (497)
Q Consensus 366 ~gd~~~l~~~l~-~-~~~~fDvIvs~ 389 (497)
+++..++...+. . ...++|.|+..
T Consensus 75 ~~~F~~l~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 75 HGNFSNLDEYLKELNGINKVDGILFD 100 (310)
T ss_dssp ES-GGGHHHHHHHTTTTS-EEEEEEE
T ss_pred eccHHHHHHHHHHccCCCccCEEEEc
Confidence 999888764322 1 34589999854
No 293
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.03 E-value=0.18 Score=54.54 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=79.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-C----CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G----ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G----~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
...+.|...+...+..+|+|..||+|.+...+++. + ...++|.|+++.....|+-++--+|+.
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~------------ 240 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE------------ 240 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC------------
Confidence 34455555555567779999999999987766665 3 246999999999999999998877762
Q ss_pred CCceEEEecchhhccccc-CCCCCceeEEEecccccc---------------------ccCh-hhHHHHHHHHhccccCC
Q 010913 359 AGKMEVVQGMVEELGESM-QIQPHSVDVLVSEWMGYC---------------------LLYE-SMLSSVLFARDQWLKPG 415 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~~~l-~~~~~~fDvIvs~~~~~~---------------------l~~~-~~l~~vL~~~~r~Lkpg 415 (497)
..+....++...-+... +....+||.|++++.... +... ..-..++..+...|+||
T Consensus 241 -~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~ 319 (489)
T COG0286 241 -GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPG 319 (489)
T ss_pred -ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCC
Confidence 13445555443321100 123467999999864320 0011 11257788899999998
Q ss_pred cE
Q 010913 416 GA 417 (497)
Q Consensus 416 G~ 417 (497)
|+
T Consensus 320 g~ 321 (489)
T COG0286 320 GR 321 (489)
T ss_pred ce
Confidence 74
No 294
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.55 E-value=0.2 Score=52.21 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=18.2
Q ss_pred hHHHHHHHHhccccCCcEEecc
Q 010913 400 MLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 400 ~l~~vL~~~~r~LkpgG~li~~ 421 (497)
++..+|..+.+-|.|||.+++.
T Consensus 215 D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 215 DLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred HHHHHHHHHHHHhccCcEEEEE
Confidence 4567888899999999999943
No 295
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.34 E-value=0.29 Score=47.92 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=71.5
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHH---c-C--CCEEEEEeCCHH---------------------
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQ---A-G--ASRVIAVEASEK--------------------- 331 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~---~-G--~~~V~gvD~S~~--------------------- 331 (497)
..|...+...+.......-+..|++.||-.|..+++++. . + ..+|++.|-=+.
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 455667777777666555568999999999987766543 1 3 257888885321
Q ss_pred -----HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHH
Q 010913 332 -----MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLF 406 (497)
Q Consensus 332 -----~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~ 406 (497)
..+..++++...|+ ..+++.++.|.+.+.-.. .+..++-++... +-.+++. ..+|.
T Consensus 136 ~~~~~s~e~V~~n~~~~gl------------~~~~v~~vkG~F~dTLp~--~p~~~IAll~lD----~DlYesT-~~aLe 196 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGL------------LDDNVRFVKGWFPDTLPD--APIERIALLHLD----CDLYEST-KDALE 196 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTT------------SSTTEEEEES-HHHHCCC---TT--EEEEEE-------SHHHH-HHHHH
T ss_pred cccccCHHHHHHHHHHcCC------------CcccEEEECCcchhhhcc--CCCccEEEEEEe----ccchHHH-HHHHH
Confidence 12222233323332 236899999999875211 223444444422 3344443 45888
Q ss_pred HHhccccCCcEEeccCcee
Q 010913 407 ARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 407 ~~~r~LkpgG~li~~~~~~ 425 (497)
.++..|.|||+|+++....
T Consensus 197 ~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 197 FLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHGGGEEEEEEEEESSTTT
T ss_pred HHHhhcCCCeEEEEeCCCC
Confidence 8999999999999665433
No 296
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.01 E-value=0.22 Score=51.58 Aligned_cols=47 Identities=36% Similarity=0.531 Sum_probs=36.0
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
...+.+|.+||-.|+|. |.++..+|++ |+.+|+++|.++.-.+.|++
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 34567889999999874 5666777776 88779999999987776654
No 297
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.88 E-value=0.37 Score=50.81 Aligned_cols=93 Identities=25% Similarity=0.365 Sum_probs=58.6
Q ss_pred HHHHhCCC-CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 287 QAILENPS-LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 287 ~~i~~~~~-~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
+.|++... ..+|++|+-+|||. |.....+++. |+ +|+++|.++.-...|+. .|. .
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~-----------------~ 247 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY-----------------E 247 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC-----------------E
Confidence 44444433 36899999999997 6666656655 88 89999999876555543 332 1
Q ss_pred EEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHH-HHhccccCCcEEe
Q 010913 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLF-ARDQWLKPGGAIL 419 (497)
Q Consensus 364 ~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~-~~~r~LkpgG~li 419 (497)
.+ +..+. + ..+|+|+... + . ..++. +..+.+|+||+++
T Consensus 248 ~~--~~~e~-----v--~~aDVVI~at-G-------~-~~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 248 VM--TMEEA-----V--KEGDIFVTTT-G-------N-KDIITGEHFEQMKDGAIVC 286 (413)
T ss_pred Ec--cHHHH-----H--cCCCEEEECC-C-------C-HHHHHHHHHhcCCCCcEEE
Confidence 11 12222 1 3479998542 1 1 22444 3478999999987
No 298
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.81 E-value=0.24 Score=50.74 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=56.2
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~--G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..+|.+||-+|||. |.++..++++ |+.+|+++|.++.-++.|++ .+ ....+ .+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~----------------~~~~~----~~ 216 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD----------------ETYLI----DD 216 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC----------------ceeeh----hh
Confidence 46789999999875 5566665653 66689999999877766653 22 11111 11
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ....+|+|+-.. +. ......+....++|++||.++
T Consensus 217 ~~-----~~~g~d~viD~~-G~-----~~~~~~~~~~~~~l~~~G~iv 253 (341)
T cd08237 217 IP-----EDLAVDHAFECV-GG-----RGSQSAINQIIDYIRPQGTIG 253 (341)
T ss_pred hh-----hccCCcEEEECC-CC-----CccHHHHHHHHHhCcCCcEEE
Confidence 11 112489998432 21 012345667778999999987
No 299
>PRK11524 putative methyltransferase; Provisional
Probab=93.65 E-value=0.21 Score=49.96 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=42.5
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~ 342 (497)
.+|.+|||.-||+|..++.+.+.|- +.+|+|+++..++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 6899999999999999999999877 999999999999999999753
No 300
>PRK13699 putative methylase; Provisional
Probab=93.60 E-value=0.28 Score=47.50 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=42.0
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~ 342 (497)
.+|..|||.-||+|..+..+.+.|- +.+|+|+++...+.|.+++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 5889999999999999999988887 899999999999999988765
No 301
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.54 E-value=0.14 Score=48.66 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=35.3
Q ss_pred CCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 010913 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~ 338 (497)
.+|..|||.-||+|..+..+.+.|- +.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 6799999999999999999999887 89999999999998874
No 302
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.52 E-value=0.42 Score=48.16 Aligned_cols=97 Identities=25% Similarity=0.292 Sum_probs=60.3
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec-c
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-M 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-d 368 (497)
...+.++.+||..|+|. |..+..+|+. |+ +|++++.++...+.+++ .|. +.+-.... .
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~--------------~~~~~~~~~~ 220 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGA--------------DEVLNSLDDS 220 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCC--------------CEEEcCCCcC
Confidence 34467788999988763 7777777876 77 79999999987776643 232 11110010 1
Q ss_pred hhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
... +. ......+|+|+... + . ...+....+.|+++|.++
T Consensus 221 ~~~~~~---~~~~~~~D~vid~~-g----~----~~~~~~~~~~l~~~G~~v 260 (338)
T cd08254 221 PKDKKA---AGLGGGFDVIFDFV-G----T----QPTFEDAQKAVKPGGRIV 260 (338)
T ss_pred HHHHHH---HhcCCCceEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 100 10 12356799998532 1 1 235667789999999987
No 303
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.50 E-value=0.21 Score=49.63 Aligned_cols=93 Identities=28% Similarity=0.289 Sum_probs=56.7
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEE--ecchhh
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV--QGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i--~gd~~~ 371 (497)
.++.+||-+|+|+ |.++..+|++ |+.+|+++|.++.-.+.|++ .|.. ..+... ...+..
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-------------~~i~~~~~~~~~~~ 181 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-------------ALAEPEVLAERQGG 181 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-------------EecCchhhHHHHHH
Confidence 4788999999875 5666677776 88679999999876666554 2320 001100 001111
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+ .....+|+|+-.. + . ...+....+.|+|+|.++
T Consensus 182 ~-----~~~~g~d~vid~~-G----~----~~~~~~~~~~l~~~G~iv 215 (280)
T TIGR03366 182 L-----QNGRGVDVALEFS-G----A----TAAVRACLESLDVGGTAV 215 (280)
T ss_pred H-----hCCCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEE
Confidence 1 1234689998431 1 1 235566678899999987
No 304
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.28 E-value=0.32 Score=50.06 Aligned_cols=46 Identities=33% Similarity=0.527 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|||. |.++..+|++ |+.+|++++.++.-.+.+++
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3567899999999864 6667777777 88679999999887776643
No 305
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.21 E-value=0.14 Score=51.65 Aligned_cols=68 Identities=31% Similarity=0.311 Sum_probs=52.5
Q ss_pred EEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCC
Q 010913 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (497)
Q Consensus 300 ~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~ 379 (497)
+|+|+-||.|.+++.+.++|...|.|+|+++.+++.-+.+. + ....+|+.++... .++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~-------------------~--~~~~~Di~~~~~~-~l~ 59 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF-------------------P--EVICGDITEIDPS-DLP 59 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH-------------------T--EEEESHGGGCHHH-HHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc-------------------c--ccccccccccccc-ccc
Confidence 69999999999999999999889999999998777666664 2 7788999887532 233
Q ss_pred CCceeEEEecc
Q 010913 380 PHSVDVLVSEW 390 (497)
Q Consensus 380 ~~~fDvIvs~~ 390 (497)
. .+|+++..+
T Consensus 60 ~-~~D~l~ggp 69 (335)
T PF00145_consen 60 K-DVDLLIGGP 69 (335)
T ss_dssp H-T-SEEEEE-
T ss_pred c-cceEEEecc
Confidence 3 599999754
No 306
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.99 E-value=0.079 Score=44.71 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCC
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEAS 329 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S 329 (497)
+....+|||||+|.+...|.+.|. .-.|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 456789999999999999999998 78899964
No 307
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=92.79 E-value=0.05 Score=33.79 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=22.9
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcC
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHC 71 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~ 71 (497)
+..|..|+..|++...+..|++..|+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 35799999999999999999987664
No 308
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.73 E-value=0.71 Score=46.90 Aligned_cols=99 Identities=23% Similarity=0.272 Sum_probs=57.6
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-.+.+++. |.. ..+.....+..
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~-------------~~i~~~~~~~~ 221 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD-------------FVINSGQDDVQ 221 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC-------------EEEcCCcchHH
Confidence 3456789999998864 5566667776 885699999998776666442 320 01111111111
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+.. + .....+|+|+-.. + . ...+....+.|+++|.++
T Consensus 222 ~~~~-~-~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 222 EIRE-L-TSGAGADVAIECS-G----N----TAARRLALEAVRPWGRLV 259 (339)
T ss_pred HHHH-H-hCCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 1110 0 1234699998432 1 1 223445567899999987
No 309
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.58 E-value=0.49 Score=48.60 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeC---CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEA---SEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~---S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
..+|.+||-+|+|. |.++..+|++ |+ +|++++. ++.-.+.|+ ..|. +.+.....+.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~----~~Ga--------------~~v~~~~~~~ 230 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE----ELGA--------------TYVNSSKTPV 230 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH----HcCC--------------EEecCCccch
Confidence 45788999999875 6677777777 88 8999987 555444443 3342 1111101111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+. .....+|+|+-.. + . ...+....+.|++||.++
T Consensus 231 ~~~-----~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 231 AEV-----KLVGEFDLIIEAT-G----V----PPLAFEALPALAPNGVVI 266 (355)
T ss_pred hhh-----hhcCCCCEEEECc-C----C----HHHHHHHHHHccCCcEEE
Confidence 111 0124689998532 1 1 225566778899999987
No 310
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.38 E-value=1.1 Score=45.95 Aligned_cols=109 Identities=23% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHc------------C-----CCEEEEEeCCHHHH-HHHHH------HHHhCCCCCCC
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQA------------G-----ASRVIAVEASEKMA-AVATQ------IAKDNDFWWDR 349 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~------------G-----~~~V~gvD~S~~~i-~~A~~------~~~~~gl~~~~ 349 (497)
.....-+|+|+||.+|..++.+... + .-+|+--|.-.+=- ...+. .....+-
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~---- 88 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRN---- 88 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTS----
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCce----
Confidence 3455679999999999987765542 1 01666666542211 11111 1111000
Q ss_pred CCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEeccccccccC--------------------------------
Q 010913 350 PQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY-------------------------------- 397 (497)
Q Consensus 350 ~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~-------------------------------- 397 (497)
=-+.-+.|....- -+|.+++|+++|....+.|..
T Consensus 89 ----------~f~~gvpgSFy~r----LfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay 154 (334)
T PF03492_consen 89 ----------YFVSGVPGSFYGR----LFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAY 154 (334)
T ss_dssp ----------EEEEEEES-TTS------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHH
T ss_pred ----------EEEEecCchhhhc----cCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHH
Confidence 0123344555443 278999999998541111110
Q ss_pred ----hhhHHHHHHHHhccccCCcEEec
Q 010913 398 ----ESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 398 ----~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
..++..+|..+.+=|+|||++++
T Consensus 155 ~~Qf~~D~~~FL~~Ra~ELv~GG~mvl 181 (334)
T PF03492_consen 155 AKQFQKDFSSFLKARAEELVPGGRMVL 181 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhheeccCcEEEE
Confidence 24567888999999999999984
No 311
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.17 E-value=0.36 Score=52.19 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..++.+|+-+|||. |..+..+++. |+ .|+++|.++..++.++.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 34678999999997 6777777776 88 79999999986665554
No 312
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=92.14 E-value=0.2 Score=36.85 Aligned_cols=50 Identities=30% Similarity=0.554 Sum_probs=37.9
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
...|.||.+ .-+...++.|+.+.|..+-.. ..|+.|...+. ..+..||.-
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~-------------------------v~CPiC~~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKN-------------------------VVCPICSSRVT--DNLIRHLNS 51 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCC-------------------------ccCCCchhhhh--hHHHHHHHH
Confidence 478999999 667899999999999874321 24888876544 368888863
No 313
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.07 E-value=0.25 Score=50.29 Aligned_cols=67 Identities=22% Similarity=0.251 Sum_probs=48.9
Q ss_pred EEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCC
Q 010913 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQP 380 (497)
Q Consensus 301 VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~ 380 (497)
|+|+.||.|.+++-+.++|..-|.++|+++.+++.-+.+. +. .++.+|+.++.. -..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-------------------~~-~~~~~Di~~~~~---~~~ 57 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-------------------GN-KVPFGDITKISP---SDI 57 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-------------------CC-CCCccChhhhhh---hhC
Confidence 6899999999999999999977889999998776555543 12 445678877641 112
Q ss_pred CceeEEEecc
Q 010913 381 HSVDVLVSEW 390 (497)
Q Consensus 381 ~~fDvIvs~~ 390 (497)
..+|+++..+
T Consensus 58 ~~~dvl~gg~ 67 (315)
T TIGR00675 58 PDFDILLGGF 67 (315)
T ss_pred CCcCEEEecC
Confidence 3589998654
No 314
>PLN02740 Alcohol dehydrogenase-like
Probab=91.79 E-value=1.1 Score=46.55 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=36.4
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
...+.+|.+||-+|||. |.++..+|++ |+.+|+++|.++.-++.|++
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 34567899999999875 6666777776 87679999999887776654
No 315
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.68 E-value=1.8 Score=40.17 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=82.7
Q ss_pred EEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CC-CCCCCCCCCCCCCCCCceEEEecch
Q 010913 300 VVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------ND-FWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 300 ~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~g-l~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
+|.-||+|+ | .++..++.+|. +|+.+|.++..++.+++.++. .| +.. ......-.++. +..++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~i~-~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQ-----EEADAALARIS-FTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHTEE-EESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchh-----hhhhhhhhhcc-cccCH
Confidence 466789987 3 35666777788 999999999999888876654 11 100 00000012344 23344
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeecCCCCCCCccccccCcccc
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPFWENVYGFTMS 449 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~~~~~~~~fw~~v~g~~~~ 449 (497)
+.+ . ..|+|+=. .....+--..++.++.+++.|+.+|.-++.++....+.....+. ..+.| ++
T Consensus 74 ~~~-------~-~adlViEa----i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p---~R~ig--~H 136 (180)
T PF02737_consen 74 EEA-------V-DADLVIEA----IPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRP---ERFIG--MH 136 (180)
T ss_dssp GGG-------C-TESEEEE-----S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTG---GGEEE--EE
T ss_pred HHH-------h-hhheehhh----ccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcC---ceEEE--Ee
Confidence 443 2 68988832 22344556789999999999999999887777655544331110 11222 11
Q ss_pred ccchHHHhhhcCCCeEeeeCCCcccccchhhhHhhhh
Q 010913 450 CVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQVSVRF 486 (497)
Q Consensus 450 ~~~~~~~~~~~~~p~v~~v~~~~l~t~~~~i~~~~~~ 486 (497)
-+ ......|.++++.... |++..+.....|
T Consensus 137 f~-----~P~~~~~lVEvv~~~~--T~~~~~~~~~~~ 166 (180)
T PF02737_consen 137 FF-----NPPHLMPLVEVVPGPK--TSPETVDRVRAL 166 (180)
T ss_dssp E------SSTTT--EEEEEE-TT--S-HHHHHHHHHH
T ss_pred cc-----cccccCceEEEeCCCC--CCHHHHHHHHHH
Confidence 11 1112346888877665 556666555544
No 316
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=91.63 E-value=0.14 Score=38.02 Aligned_cols=32 Identities=34% Similarity=0.765 Sum_probs=26.5
Q ss_pred ehhhhhHhhcccccccccCCccCCHHHHHHHHHHhccCcc
Q 010913 90 KLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAYNLKE 129 (497)
Q Consensus 90 KliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~~~~~~ 129 (497)
+||.|+|++- .-|+|||.++.+.+.|.. +||+
T Consensus 18 ~l~~YLR~~~--~YC~~Cg~~Y~d~~dL~~------~CPG 49 (55)
T PF13821_consen 18 KLLSYLREEH--NYCFWCGTKYDDEEDLER------NCPG 49 (55)
T ss_pred HHHHHHHhhC--ceeeeeCCccCCHHHHHh------CCCC
Confidence 6899999985 349999999999877753 7887
No 317
>PLN02827 Alcohol dehydrogenase-like
Probab=91.51 E-value=1 Score=46.91 Aligned_cols=46 Identities=33% Similarity=0.452 Sum_probs=34.8
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|+|+ |.++..+|++ |+..|++++.++.-.+.|++
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 4567899999999865 5566667776 88779999998876666643
No 318
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.51 E-value=0.33 Score=46.52 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=65.9
Q ss_pred CCCCC-CEEEEEcCCCCHhHHHHHHc--C------C--CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce
Q 010913 294 SLMKG-AVVMDIGCGTGILSLFAAQA--G------A--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (497)
Q Consensus 294 ~~~~~-~~VLDvGCGtG~ls~~la~~--G------~--~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i 362 (497)
+++.| ++|+|+.+..|.+|..|++. . . .+|++||+-+ |.- + ..|
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-MaP----------I--------------~GV 91 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MAP----------I--------------EGV 91 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CCc----------c--------------Cce
Confidence 34555 68999999999999988875 1 1 1399999865 221 1 356
Q ss_pred EEEecchhhcccc----cCCCCCceeEEEecccccc--ccC--h----hhHHHHHHHHhccccCCcEEe
Q 010913 363 EVVQGMVEELGES----MQIQPHSVDVLVSEWMGYC--LLY--E----SMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 363 ~~i~gd~~~l~~~----l~~~~~~fDvIvs~~~~~~--l~~--~----~~l~~vL~~~~r~LkpgG~li 419 (497)
.-+++|+...... ..|...+.|+|+|.....+ ++. + .-+.+.|.-...+|||||.++
T Consensus 92 ~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 92 IQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred EEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 7788888664310 0245679999999752211 211 1 123455556679999999998
No 319
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.41 E-value=0.39 Score=46.09 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCCHhHHHHH--HcCCCEEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCceEEEecch-hhc
Q 010913 297 KGAVVMDIGCGTGILSLFAA--QAGASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEVVQGMV-EEL 372 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la--~~G~~~V~gvD~S~~~i~~A~~~~~~~-gl~~~~~~~~~~~~~~~~i~~i~gd~-~~l 372 (497)
++.++||||.|.-.+=-.+. ..|. +.+|.|+++..++.|+.++..| ++. ..|++....= ..+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~-------------~~I~lr~qk~~~~i 143 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLE-------------RAIRLRRQKDSDAI 143 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchh-------------hheeEEeccCcccc
Confidence 56789999988754322222 2366 8999999999999999999888 662 4566554332 111
Q ss_pred ccccCCCCCceeEEEeccccc
Q 010913 373 GESMQIQPHSVDVLVSEWMGY 393 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~ 393 (497)
-..+.-..+.||+++|++.+|
T Consensus 144 f~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 144 FNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred ccccccccceeeeEecCCCcc
Confidence 100112257899999998544
No 320
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.37 E-value=1.4 Score=42.56 Aligned_cols=96 Identities=29% Similarity=0.411 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-h
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-E 370 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-~ 370 (497)
.+.++.+||..|+|+ |.....+++. |. +|++++.++...+.+++. +.. ..+.....+. .
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~----g~~-------------~~~~~~~~~~~~ 192 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKEL----GAD-------------HVIDYKEEDLEE 192 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh----CCc-------------eeccCCcCCHHH
Confidence 346789999999996 6666667776 75 999999998766655432 210 0011100011 0
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+. ......+|+|+... + . ...+....+.|+++|.++
T Consensus 193 ~~~---~~~~~~~d~vi~~~-~----~----~~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 193 ELR---LTGGGGADVVIDAV-G----G----PETLAQALRLLRPGGRIV 229 (271)
T ss_pred HHH---HhcCCCCCEEEECC-C----C----HHHHHHHHHhcccCCEEE
Confidence 000 02345799999542 1 1 134556678899999987
No 321
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.33 E-value=1.2 Score=46.24 Aligned_cols=47 Identities=26% Similarity=0.388 Sum_probs=36.6
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
...+.+|.+||-.|||. |.++..+|++ |+.+|+++|.++.-.+.|++
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34567899999999875 6667777777 87789999999987776654
No 322
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.27 E-value=0.16 Score=52.66 Aligned_cols=65 Identities=25% Similarity=0.265 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+|..|-|+-||.|-+++.+++.|+ +|++-|.++.+++..+.+++.|.+. +.+|.+...|+..+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~------------~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD------------PSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc------------hhheeeecccHHHH
Confidence 36789999999999999999999996 9999999999999999999888763 23477777666554
No 323
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.18 E-value=1.3 Score=45.10 Aligned_cols=44 Identities=36% Similarity=0.504 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
...++.+||-.|||+ |.++..+|++ |+..|++++.++.-.+.++
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 456789999999865 5566667776 8866899999987776654
No 324
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.08 E-value=1.6 Score=44.41 Aligned_cols=45 Identities=27% Similarity=0.214 Sum_probs=33.8
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|+|. |.++..+|++ |+ +|++++.++.-.+.|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA 207 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence 4567899999999864 5556667776 87 79999999876665554
No 325
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=91.06 E-value=1.2 Score=44.00 Aligned_cols=133 Identities=15% Similarity=0.131 Sum_probs=83.4
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 279 ~~r~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
.+|+..+-+.+....... ...|+.+|||-=.-...+......+++=||..+ +++.-++.+...+.. .
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~-----------~ 130 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAE-----------P 130 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCC-----------C
Confidence 467776766666554322 346999999976555555322113777777755 565566666654421 1
Q ss_pred CCceEEEecchhh-ccccc---CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 359 AGKMEVVQGMVEE-LGESM---QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 359 ~~~i~~i~gd~~~-l~~~l---~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
..+.+++..|+.. +...+ .+.+...=+++++.+.+. +.+.....+|..+.+...||+.|+++..+.
T Consensus 131 ~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~Y-L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 131 PAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMY-LTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhc-CCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 3578888888752 11111 133445567887775443 355678889999998888999999765443
No 326
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=90.96 E-value=0.12 Score=30.48 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=19.7
Q ss_pred ceecCCCCCCCHHHHHHHhhhhc
Q 010913 48 LCLFCDAGYSSCDTLFEHCRLSH 70 (497)
Q Consensus 48 ~CLFC~~~~~s~~~~l~Hm~~~H 70 (497)
.|-+|+..|++...+..||+..|
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCcCCCCcCCcHHHHHHHHHhhC
Confidence 58999999999999999999877
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.92 E-value=0.58 Score=47.18 Aligned_cols=83 Identities=23% Similarity=0.189 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 297 KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 297 ~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
++.+||-+|||. |.++..+|++ |+..|+++|.++..++.|... .. + +..+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~----------------i-----~~~~~-- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV----------------L-----DPEKD-- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc----------------c-----Chhhc--
Confidence 577899899875 7777777776 887788899887665544321 11 1 00000
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
....+|+|+-.. + . ...+....+.|+|||.++
T Consensus 197 ----~~~g~Dvvid~~-G----~----~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 197 ----PRRDYRAIYDAS-G----D----PSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred ----cCCCCCEEEECC-C----C----HHHHHHHHHhhhcCcEEE
Confidence 123589998432 1 1 234566678899999988
No 328
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.90 E-value=0.93 Score=45.51 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
-++.+|.-||.|. |..+..+|-- |+ .|+-+|+|..-+......+ ..++..+.....++.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f------------------~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF------------------GGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh------------------CceeEEEEcCHHHHH
Confidence 3446677788776 5554444443 66 9999999987665544443 357888888887775
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-.-.+.|++|... .+.....+.-+.+++.+.+|||+.|+
T Consensus 227 ----e~v~~aDlvIgaV---LIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 227 ----EAVKKADLVIGAV---LIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ----HHhhhccEEEEEE---EecCCCCceehhHHHHHhcCCCcEEE
Confidence 2356899999653 34455667778888999999999987
No 329
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.81 E-value=0.58 Score=40.33 Aligned_cols=81 Identities=28% Similarity=0.447 Sum_probs=51.9
Q ss_pred CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh----hcccccCCCCC
Q 010913 307 GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE----ELGESMQIQPH 381 (497)
Q Consensus 307 GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~----~l~~~l~~~~~ 381 (497)
|.|.++..+|++ | .+|+++|.++.-.+.+++. |. -.++..+-. .+.. ..+..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----Ga----------------~~~~~~~~~~~~~~i~~--~~~~~ 57 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----GA----------------DHVIDYSDDDFVEQIRE--LTGGR 57 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----TE----------------SEEEETTTSSHHHHHHH--HTTTS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----cc----------------ccccccccccccccccc--ccccc
Confidence 458888888888 8 5999999999877766543 32 112222111 1110 02335
Q ss_pred ceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 382 ~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+|+|+-.. + . ...+.....+|+|+|.++
T Consensus 58 ~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 86 (130)
T PF00107_consen 58 GVDVVIDCV-G----S----GDTLQEAIKLLRPGGRIV 86 (130)
T ss_dssp SEEEEEESS-S----S----HHHHHHHHHHEEEEEEEE
T ss_pred cceEEEEec-C----c----HHHHHHHHHHhccCCEEE
Confidence 899999432 1 1 346777788999999988
No 330
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.37 E-value=0.59 Score=46.95 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=39.1
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
....+.+|.+|.-+|+|. |.....-|++ ||++++|||+++.-.+.|++.
T Consensus 186 ~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 186 NTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 445678999999999997 5555555565 999999999999888777754
No 331
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.33 E-value=1.6 Score=44.29 Aligned_cols=90 Identities=26% Similarity=0.396 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc---hhh
Q 010913 297 KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM---VEE 371 (497)
Q Consensus 297 ~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd---~~~ 371 (497)
++.+||-.|||. |..+..+|++ |+.+|++++.++...+.+++. +. + .++... +..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~--------------~--~vi~~~~~~~~~ 224 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GA--------------D--ETVNLARDPLAA 224 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC--------------C--EEEcCCchhhhh
Confidence 788999998875 6666667776 776799999998777654432 22 0 111111 112
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+ ....+.+|+|+... + . ...+....+.|+++|.++
T Consensus 225 ~----~~~~~~vd~vld~~-g----~----~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 225 Y----AADKGDFDVVFEAS-G----A----PAALASALRVVRPGGTVV 259 (339)
T ss_pred h----hccCCCccEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 1 11234599999532 1 0 224566678999999988
No 332
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.24 E-value=0.99 Score=46.38 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHH
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIA 340 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~ 340 (497)
+-..|+|+|.|.|.++.+++-. |. .|.|||-|....+.|++.-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHHH
Confidence 3468999999999999999876 66 8999999988877776543
No 333
>PHA00616 hypothetical protein
Probab=90.10 E-value=0.14 Score=36.00 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=26.1
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcch
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDF 74 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~ 74 (497)
|-.|+.|...|.....+..|+++.||=+-
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~ 29 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK 29 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence 35899999999999999999999999743
No 334
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.05 E-value=1.9 Score=43.98 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=59.2
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV- 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~- 369 (497)
..+.++.+||-.|+|. |..+..+|++ |+..|++++.++.....+++ .|.. ..+.....+.
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~-------------~~v~~~~~~~~ 224 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT-------------DIVDYKNGDVV 224 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-------------eEecCCCCCHH
Confidence 4567789999998763 5666677777 88789999999876665553 3320 0111111111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. + .....+|+|+... .. ...+....+.|+++|+++
T Consensus 225 ~~i~~-~-~~~~~~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 225 EQILK-L-TGGKGVDAVIIAG-----GG----QDTFEQALKVLKPGGTIS 263 (351)
T ss_pred HHHHH-H-hCCCCCcEEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 11110 0 1235699998432 11 235566778899999987
No 335
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.05 E-value=2.6 Score=42.99 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=65.8
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|--||+|+ | .++..++.+|. .|+.+|.++..++.++..+.. .++. ......++++.. ++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~i~~~~-~l 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLA--------PGASPARLRFVA-TI 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--------hhhHHhhceecC-CH
Confidence 6788999996 2 35566677788 999999999887766554431 2210 000012344332 23
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
.+. -...|+|+-.. .....--..++.++.+.++|+.+|.-++..+..
T Consensus 78 ~~a-------v~~aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~ 124 (321)
T PRK07066 78 EAC-------VADADFIQESA----PEREALKLELHERISRAAKPDAIIASSTSGLLP 124 (321)
T ss_pred HHH-------hcCCCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEEECCCccCH
Confidence 221 24578888432 233344567788899999999877666665533
No 336
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.95 E-value=0.45 Score=46.85 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
-+-..|+.|+-+| -.-..++.++-.| +++|..||++++.+..-.+.++..|+ +++..+.-|+.+
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~--------------~~ie~~~~Dlr~ 212 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY--------------NNIEAFVFDLRN 212 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc--------------cchhheeehhcc
Confidence 3446789999999 5555666666554 46999999999999999999999987 568888888776
Q ss_pred cccccCCC---CCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 372 LGESMQIQ---PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 372 l~~~l~~~---~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
. +| ..+||+++..+. .....+..++..=...||--
T Consensus 213 p-----lpe~~~~kFDvfiTDPp----eTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 213 P-----LPEDLKRKFDVFITDPP----ETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred c-----ChHHHHhhCCeeecCch----hhHHHHHHHHhccHHHhcCC
Confidence 3 44 468999997652 12234455555544556544
No 337
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.26 E-value=2.2 Score=44.79 Aligned_cols=104 Identities=23% Similarity=0.241 Sum_probs=60.5
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec---
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG--- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g--- 367 (497)
..+.++.+||-.|+|. |.++..+|++ |+..|+++|.++.-++.|++. |. . .+...
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga---------------~-~v~~~~~~ 240 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC---------------E-TVDLSKDA 240 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC---------------e-EEecCCcc
Confidence 3456788888888875 6666777776 887778889888766666543 32 1 11111
Q ss_pred chh-hcccccCCCCCceeEEEeccccccc------cChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MVE-ELGESMQIQPHSVDVLVSEWMGYCL------LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~~-~l~~~l~~~~~~fDvIvs~~~~~~l------~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.. .+.. + .....+|+|+-.. +.-- .........+....+++++||.++
T Consensus 241 ~~~~~v~~-~-~~~~g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~ 296 (393)
T TIGR02819 241 TLPEQIEQ-I-LGEPEVDCAVDCV-GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIG 296 (393)
T ss_pred cHHHHHHH-H-cCCCCCcEEEECC-CCccccccccccccchHHHHHHHHHHhhCCCEEE
Confidence 111 1110 0 1234689998532 2100 001122346777788999999998
No 338
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=89.06 E-value=2.1 Score=44.18 Aligned_cols=47 Identities=30% Similarity=0.497 Sum_probs=34.9
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
...+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-.+.+++
T Consensus 179 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 179 TAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 34567899999998764 5556666776 87789999999877766643
No 339
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=0.18 Score=47.01 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=57.4
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
....|-||.+.|++..-+=.|..+.|.--|...+.+ |-|.|++ ||. -|+++|.+..+-..||..+
T Consensus 105 h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veR-G~dMy~C--lvE------------gCt~KFkT~r~RkdH~I~~ 169 (253)
T KOG4173|consen 105 HGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALVER-GQDMYQC--LVE------------GCTEKFKTSRDRKDHMIRM 169 (253)
T ss_pred ccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHc-CccHHHH--HHH------------hhhhhhhhhhhhhhHHHHh
Confidence 456999999999999999999999999988887755 5788886 332 3888998888888999988
Q ss_pred ccCcc
Q 010913 125 YNLKE 129 (497)
Q Consensus 125 ~~~~~ 129 (497)
...+.
T Consensus 170 Hk~Pa 174 (253)
T KOG4173|consen 170 HKYPA 174 (253)
T ss_pred ccCCc
Confidence 66664
No 340
>PRK11524 putative methyltransferase; Provisional
Probab=88.95 E-value=0.54 Score=47.11 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=42.5
Q ss_pred CceEEEecchhhcccccCCCCCceeEEEeccccccc-----c--------ChhhHHHHHHHHhccccCCcEEecc
Q 010913 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCL-----L--------YESMLSSVLFARDQWLKPGGAILPD 421 (497)
Q Consensus 360 ~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l-----~--------~~~~l~~vL~~~~r~LkpgG~li~~ 421 (497)
...+++++|..++.. .++.++||+|++++..... . +...+..++.++.++|||||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELK--KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHH--hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 455789999988632 3567899999998642210 0 1123467889999999999999853
No 341
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.55 E-value=2 Score=43.27 Aligned_cols=100 Identities=25% Similarity=0.356 Sum_probs=59.1
Q ss_pred hCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 291 ENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
....+.++.+||-+|+|. |..+..+|++ |+..|++++.++.....+++. |. . .++..+
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~--------------~--~~~~~~ 212 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GA--------------T--ETVDPS 212 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CC--------------e--EEecCC
Confidence 344567889999998753 5566667776 775599999998877665432 32 1 122111
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
-.............+|+|+... + . ...+....+.|+++|.++
T Consensus 213 ~~~~~~~~~~~~~~vd~v~~~~-~----~----~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 213 REDPEAQKEDNPYGFDVVIEAT-G----V----PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred CCCHHHHHHhcCCCCcEEEECC-C----C----hHHHHHHHHHHhcCCEEE
Confidence 1110000012345799999532 1 1 235566678899999987
No 342
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=88.39 E-value=0.32 Score=28.76 Aligned_cols=21 Identities=33% Similarity=0.811 Sum_probs=19.0
Q ss_pred cccccCCccCCHHHHHHHHHH
Q 010913 103 RCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.|..|++.|.+...|..||..
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHhH
Confidence 489999999999999999974
No 343
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.36 E-value=2 Score=36.28 Aligned_cols=87 Identities=15% Similarity=0.118 Sum_probs=51.5
Q ss_pred CCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCc
Q 010913 306 CGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHS 382 (497)
Q Consensus 306 CGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~ 382 (497)
||.|.++..+++. +...|+.+|.++..++.+++. .+.++.||..+...-....-.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------------------~~~~i~gd~~~~~~l~~a~i~~ 62 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------------------GVEVIYGDATDPEVLERAGIEK 62 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------------------TSEEEES-TTSHHHHHHTTGGC
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------------------ccccccccchhhhHHhhcCccc
Confidence 4556666665554 334899999999877655543 3578999987654211234467
Q ss_pred eeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 383 VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 383 fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++.|++.. ........+....|-+.|...++
T Consensus 63 a~~vv~~~------~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 63 ADAVVILT------DDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp ESEEEEES------SSHHHHHHHHHHHHHHTTTSEEE
T ss_pred cCEEEEcc------CCHHHHHHHHHHHHHHCCCCeEE
Confidence 88888532 12223333444456677777766
No 344
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.25 E-value=1.3 Score=45.73 Aligned_cols=114 Identities=21% Similarity=0.217 Sum_probs=75.8
Q ss_pred HHhCCCCCCCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHH-------hCCCCCCCCCCCCCCCCCC
Q 010913 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAK-------DNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~-------~~gl~~~~~~~~~~~~~~~ 360 (497)
+...+.+.++....|+|.|.|.+..++|.. |++.-+|+++.......|..+.. ..|- ...
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk------------~~~ 251 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK------------KPN 251 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC------------CcC
Confidence 444557788999999999999998888776 67788899888666555543322 2221 135
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+..++|+..+..- +..-....++|+++. +.+. +++.-=+.++..-+++|-+++
T Consensus 252 ~~~~i~gsf~~~~~-v~eI~~eatvi~vNN---~~Fd-p~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 252 KIETIHGSFLDPKR-VTEIQTEATVIFVNN---VAFD-PELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred ceeecccccCCHHH-HHHHhhcceEEEEec---ccCC-HHHHHhhHHHHhhCCCcceEe
Confidence 67888888755421 111245688999765 3333 344434447888899999988
No 345
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.22 E-value=2.2 Score=43.87 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=60.0
Q ss_pred hCCCCCCCCEEEEEcC-C-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC-G-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|+ | .|.++..+|++ |+ +|++++.++.-.+.+++. .|.. ..+.....
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~---lGa~-------------~vi~~~~~ 214 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNK---LGFD-------------EAFNYKEE 214 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh---cCCC-------------EEEECCCc
Confidence 3445678999999998 3 57778888887 87 799999988766555422 3320 01111111
Q ss_pred -chhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 -MVEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 -d~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+... +. ....+.+|+|+-.. + ...+....+.|++||.++
T Consensus 215 ~~~~~~i~---~~~~~gvD~v~d~v-G---------~~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 215 PDLDAALK---RYFPEGIDIYFDNV-G---------GDMLDAALLNMKIHGRIA 255 (348)
T ss_pred ccHHHHHH---HHCCCCcEEEEECC-C---------HHHHHHHHHHhccCCEEE
Confidence 2211 11 01134699998432 1 124566678899999987
No 346
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.20 E-value=3 Score=43.96 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=28.5
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKM 332 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~ 332 (497)
..+|++|+-+|+|. |......++. |+ +|+++|.++.-
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r 230 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIR 230 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhh
Confidence 36899999999997 5555555555 77 89999998853
No 347
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=87.91 E-value=2.6 Score=43.51 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=34.6
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|+|. |.++..+|++ |+.+|++++.++.-.+.|++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4567899999998764 5566667776 87789999999877766643
No 348
>PLN02494 adenosylhomocysteinase
Probab=87.87 E-value=1.8 Score=46.23 Aligned_cols=96 Identities=22% Similarity=0.337 Sum_probs=55.9
Q ss_pred HHHHHHhCCCC-CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 285 YRQAILENPSL-MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 285 y~~~i~~~~~~-~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
..+.|++...+ ..|++|+-+|+|. |......++. |+ +|+++|.++.-...|. ..|+
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~----~~G~---------------- 298 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQAL----MEGY---------------- 298 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHH----hcCC----------------
Confidence 34445544333 6799999999996 5444444444 88 8999999985332222 1232
Q ss_pred eEEEecchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 362 i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.++ ++.+. + ...|+|+... + ....+.......+||||+|+
T Consensus 299 -~vv--~leEa-----l--~~ADVVI~tT-G-------t~~vI~~e~L~~MK~GAiLi 338 (477)
T PLN02494 299 -QVL--TLEDV-----V--SEADIFVTTT-G-------NKDIIMVDHMRKMKNNAIVC 338 (477)
T ss_pred -eec--cHHHH-----H--hhCCEEEECC-C-------CccchHHHHHhcCCCCCEEE
Confidence 111 23332 1 2479988532 1 11112355667899999988
No 349
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.82 E-value=0.39 Score=43.57 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE-EEecchh-hcccc
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME-VVQGMVE-ELGES 375 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~-~i~gd~~-~l~~~ 375 (497)
|++++-+|...=..-..+.+.|+++|+.|+.++--++ .+. .+++. +...+.. ++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~--~~~-------------------~dr~ssi~p~df~~~~~-- 58 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQ--EEF-------------------RDRLSSILPVDFAKNWQ-- 58 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccC--ccc-------------------ccccccccHHHHHHHHH--
Confidence 6788999999888877777889999999998763221 110 12222 2222221 221
Q ss_pred cCCCCCceeEEEeccc--cccc-------cChhhHHHHHHHHhccccCCcEEec
Q 010913 376 MQIQPHSVDVLVSEWM--GYCL-------LYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~--~~~l-------~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
...++||.+.|... ...| -...+ ...+..+.++|||||.|++
T Consensus 59 --~y~~~fD~~as~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 59 --KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred --HhhccchhhheechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEE
Confidence 23567999876321 0111 11222 3466778899999999983
No 350
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=87.64 E-value=3.8 Score=42.63 Aligned_cols=99 Identities=25% Similarity=0.318 Sum_probs=56.5
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEec--
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQG-- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~g-- 367 (497)
..+.+|.+||-.|+|. |..++.+|++ |+.+|++++.++.-...+++ .|. +.+ .....
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~--------------~~~v~~~~~~~ 260 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGA--------------DYVFNPTKMRD 260 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC--------------CEEEccccccc
Confidence 4567888888888754 4455556666 87689999998864444433 343 111 11100
Q ss_pred -c-hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 -M-VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 -d-~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+ ...+.. + .....+|+|+... + .....+....+.|+++|+++
T Consensus 261 ~~~~~~v~~-~-~~g~gvDvvld~~-g-------~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 261 CLSGEKVME-V-TKGWGADIQVEAA-G-------APPATIPQMEKSIAINGKIV 304 (384)
T ss_pred ccHHHHHHH-h-cCCCCCCEEEECC-C-------CcHHHHHHHHHHHHcCCEEE
Confidence 1 111110 0 2345699998531 1 11234566678899999988
No 351
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=87.43 E-value=2.6 Score=41.29 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+.++.+||-.|||. |..+..+|++ |+.+|++++.++.....+++. |.. +.+ +... .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~-------------~~~--~~~~-~ 152 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA-------------DPV--AADT-A 152 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC-------------ccc--cccc-h
Confidence 4567889999998875 6666777776 874599999998876655543 210 111 1000 0
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.. .....+|+|+... .. ...+....+.|+++|.++
T Consensus 153 ~~-----~~~~~~d~vl~~~-----~~----~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 153 DE-----IGGRGADVVIEAS-----GS----PSALETALRLLRDRGRVV 187 (277)
T ss_pred hh-----hcCCCCCEEEEcc-----CC----hHHHHHHHHHhcCCcEEE
Confidence 11 1244689998531 11 224566678899999987
No 352
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=87.38 E-value=2.8 Score=43.25 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.6
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEK 331 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~ 331 (497)
..+|.+||-.|+|. |.++..+|++ |+ +|++++.++.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~ 218 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSN 218 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence 35788898899875 6677777777 87 7888888764
No 353
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=87.22 E-value=1.5 Score=44.74 Aligned_cols=51 Identities=27% Similarity=0.488 Sum_probs=41.3
Q ss_pred HHhCCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHH
Q 010913 289 ILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 289 i~~~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~ 339 (497)
++......+|.+|.-+|||. |..++.-|+. |+.+++|||+++.-++.|++.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 34455678999999999996 7777776666 999999999999888877764
No 354
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=87.19 E-value=0.24 Score=29.34 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.4
Q ss_pred ceecCCCCCCCHHHHHHHhhhhc
Q 010913 48 LCLFCDAGYSSCDTLFEHCRLSH 70 (497)
Q Consensus 48 ~CLFC~~~~~s~~~~l~Hm~~~H 70 (497)
.|--|++.|++...+..||+. |
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHH-H
T ss_pred CCCCCCCccCCHHHHHHHHhH-C
Confidence 688999999999999999987 5
No 355
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.13 E-value=4.3 Score=41.09 Aligned_cols=98 Identities=24% Similarity=0.401 Sum_probs=56.6
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
...++.+||-.|+|. |..+..+|++ |...|++++.++.....+++. |.. ..+.....+..+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~-------------~vi~~~~~~~~~ 226 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT-------------DIINPKNGDIVE 226 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc-------------EEEcCCcchHHH
Confidence 456788998887753 6666777776 755899998887666555432 210 011111111111
Q ss_pred -cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 -LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 -l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.. ..+...+|+|+... + . ...+....+.|+++|.++
T Consensus 227 ~i~~--~~~~~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 227 QILE--LTGGRGVDCVIEAV-G----F----EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred HHHH--HcCCCCCcEEEEcc-C----C----HHHHHHHHHHhhcCCEEE
Confidence 110 02335799998532 1 1 135666678999999987
No 356
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.05 E-value=3.7 Score=43.57 Aligned_cols=84 Identities=29% Similarity=0.354 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
..|++|+-+|+|. |......++. |+ +|+.+|.++.....|. ..|. .+. ++.+.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~----~~G~-----------------~v~--~l~ea- 264 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAA----MDGF-----------------RVM--TMEEA- 264 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHH----hcCC-----------------Eec--CHHHH-
Confidence 5899999999986 4444444444 88 8999999985432221 1232 211 23332
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHH-HHhccccCCcEEe
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLF-ARDQWLKPGGAIL 419 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~-~~~r~LkpgG~li 419 (497)
+ ..+|+|+... + . ..++. .....+|+|++++
T Consensus 265 ----l--~~aDVVI~aT-G-------~-~~vI~~~~~~~mK~Gaili 296 (425)
T PRK05476 265 ----A--ELGDIFVTAT-G-------N-KDVITAEHMEAMKDGAILA 296 (425)
T ss_pred ----H--hCCCEEEECC-C-------C-HHHHHHHHHhcCCCCCEEE
Confidence 1 2589998642 1 1 22443 5678899999987
No 357
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.99 E-value=1.6 Score=44.72 Aligned_cols=73 Identities=27% Similarity=0.267 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
..+++|+-||-|.+++-+..+|..-+.++|+++..++.-+.+. ....++.+|+..+... .
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~-------------------~~~~~~~~di~~~~~~-~ 62 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANF-------------------PHGDIILGDIKELDGE-A 62 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhC-------------------CCCceeechHhhcChh-h
Confidence 3579999999999999999999989999999997665444442 1145666777765410 1
Q ss_pred CCCCceeEEEecc
Q 010913 378 IQPHSVDVLVSEW 390 (497)
Q Consensus 378 ~~~~~fDvIvs~~ 390 (497)
++...+|+|+..+
T Consensus 63 ~~~~~~DvligGp 75 (328)
T COG0270 63 LRKSDVDVLIGGP 75 (328)
T ss_pred ccccCCCEEEeCC
Confidence 1112789999754
No 358
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.98 E-value=2.5 Score=42.33 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..|++||--|.|.|. +++.+|++|+ +++-.|++........+.+++.| ++..+..|+.+.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g----------------~~~~y~cdis~~ 98 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG----------------EAKAYTCDISDR 98 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC----------------ceeEEEecCCCH
Confidence 468999999999996 6888999999 89999999988877666666554 567777777654
Q ss_pred cc------ccCCCCCceeEEEecc
Q 010913 373 GE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~------~l~~~~~~fDvIvs~~ 390 (497)
.+ .+.-..+.+|++|.+.
T Consensus 99 eei~~~a~~Vk~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 99 EEIYRLAKKVKKEVGDVDILVNNA 122 (300)
T ss_pred HHHHHHHHHHHHhcCCceEEEecc
Confidence 32 1223457899999874
No 359
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=86.89 E-value=4.8 Score=41.19 Aligned_cols=42 Identities=33% Similarity=0.499 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
.++.+||-.|+|. |..+..+|++ |+++|++++.++.-...++
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 219 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR 219 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 4788898888753 4556666766 7778999998887655443
No 360
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=86.82 E-value=3.8 Score=43.06 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=36.1
Q ss_pred CCCCCCCEEEEEc-CC-CCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIG-CG-TGILSLFAAQA---GASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 293 ~~~~~~~~VLDvG-CG-tG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~ 339 (497)
..+.+|.+||-+| +| .|.++..+|++ |+.+|+++|.++.-++.|++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 3456788999997 45 47777777876 446899999999888887764
No 361
>PRK10083 putative oxidoreductase; Provisional
Probab=86.77 E-value=3.4 Score=41.82 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=33.7
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHH-c-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQ-A-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~-~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|+|. |..+..+|+ . |+..|++++.++.-.+.+++
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 4567889999999764 445566676 3 88789999998877665554
No 362
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.23 E-value=4.2 Score=41.61 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|||. |.++..+|++ |+ +|++++.++.-++.|++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4567899999999965 6677777777 87 79999999987776654
No 363
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.12 E-value=6.3 Score=37.45 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 297 KGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
++++||-.|++.|+ +...+++.|+ +|++++.++.-...+.+..... .++.++.+|+.+..
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~Dl~~~~ 66 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY----------------GNIHYVVGDVSSTE 66 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc----------------CCeEEEECCCCCHH
Confidence 57899999987654 3444555688 8999999886555443333221 25778888876532
Q ss_pred ccc------CCCCCceeEEEecc
Q 010913 374 ESM------QIQPHSVDVLVSEW 390 (497)
Q Consensus 374 ~~l------~~~~~~fDvIvs~~ 390 (497)
.-. ...-+.+|.|+...
T Consensus 67 ~~~~~~~~~~~~~~~id~ii~~a 89 (238)
T PRK05786 67 SARNVIEKAAKVLNAIDGLVVTV 89 (238)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcC
Confidence 100 00123578887654
No 364
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.03 E-value=2.4 Score=47.76 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=38.1
Q ss_pred ceEEEecchhhcccccCCCCCceeEEEeccccccccChhhH-HHHHHHHhccccCCcEEe
Q 010913 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESML-SSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 361 ~i~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l-~~vL~~~~r~LkpgG~li 419 (497)
+++++.||+.+.- +-....||+++...++-. ..+.+. ..++..+.++++|||+++
T Consensus 148 ~l~l~~gd~~~~~---~~~~~~~d~~~lD~FsP~-~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 148 TLDLWFGDANELL---PQLDARADAWFLDGFAPA-KNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred EEEEEecCHHHHH---HhccccccEEEeCCCCCc-cChhhccHHHHHHHHHHhCCCCEEE
Confidence 4568889998753 212356999997653221 123332 578999999999999998
No 365
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.03 E-value=4.5 Score=40.51 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=58.9
Q ss_pred hCCCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|+ |.|.++..+|++ |+ +|+++..++.-.+.+++ .|.. ..+.....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~-------------~vi~~~~~ 198 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD-------------AVFNYKTV 198 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC-------------EEEeCCCc
Confidence 3445678999999985 346677777877 87 79999998876665543 3430 01111111
Q ss_pred ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ..+. ......+|+|+... + ...+....+.|+++|.++
T Consensus 199 ~~~~~v~---~~~~~gvd~vld~~-g---------~~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 199 SLEEALK---EAAPDGIDCYFDNV-G---------GEFSSTVLSHMNDFGRVA 238 (329)
T ss_pred cHHHHHH---HHCCCCcEEEEECC-C---------HHHHHHHHHhhccCCEEE
Confidence 11 1111 11235699998432 1 124566678899999987
No 366
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=86.01 E-value=1.8 Score=41.33 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc---CCCEEEEEeCCHHHHHHHHHHHH
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAK 341 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~---G~~~V~gvD~S~~~i~~A~~~~~ 341 (497)
...+-++.|-.||.|.+.-.+.-. ....|+|-|+++.+++.|++|+.
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 345679999999999875444332 23689999999999999998875
No 367
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=85.86 E-value=3.6 Score=42.38 Aligned_cols=95 Identities=22% Similarity=0.327 Sum_probs=58.3
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec---
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG--- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g--- 367 (497)
..+.++.+||-.|+|. |.++..+|++ |+..|++++.++.-...+++ .|. + .++..
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~--------------~--~~i~~~~~ 241 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA--------------T--HVINPKEE 241 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC--------------c--EEecCCCc
Confidence 3456788999998764 6667777777 88789999999876665543 222 1 11111
Q ss_pred ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. +.+.. .....+|+|+... + . ...+....+.|+++|.++
T Consensus 242 ~~~~~v~~---~~~~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 242 DLVAAIRE---ITGGGVDYALDTT-G----V----PAVIEQAVDALAPRGTLA 282 (365)
T ss_pred CHHHHHHH---HhCCCCcEEEECC-C----C----cHHHHHHHHHhccCCEEE
Confidence 11 11110 1135699998531 1 1 124566678899999988
No 368
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.86 E-value=1.8 Score=41.34 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=54.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEE
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~ 364 (497)
..+.|.+........-|.+||.|.|+++..+..+|+++...|+.+...+.-.+-..... +.++.+
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa---------------~~~~~I 102 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA---------------PGKLRI 102 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC---------------CcceEE
Confidence 44556666666677889999999999999999999999999999988876544443322 236677
Q ss_pred Eecchhhc
Q 010913 365 VQGMVEEL 372 (497)
Q Consensus 365 i~gd~~~l 372 (497)
.++|+..+
T Consensus 103 Hh~D~LR~ 110 (326)
T KOG0821|consen 103 HHGDVLRF 110 (326)
T ss_pred ecccccee
Confidence 77776543
No 369
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=85.59 E-value=4.8 Score=40.81 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=56.7
Q ss_pred CCCCC--CEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEec
Q 010913 294 SLMKG--AVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQG 367 (497)
Q Consensus 294 ~~~~~--~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~g 367 (497)
.+.++ .+||-.|+ |.|.++..+|++ |+.+|++++.++.-.+.+++. .|. +.+ ..-..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa--------------~~vi~~~~~ 211 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGF--------------DAAINYKTD 211 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCC--------------cEEEECCCC
Confidence 34444 89999986 356777778887 876799999988766555442 332 111 11111
Q ss_pred chh-hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MVE-ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~~-~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
++. .+. ......+|+|+... + . . .+....++|+++|.++
T Consensus 212 ~~~~~i~---~~~~~gvd~vid~~-g----~----~-~~~~~~~~l~~~G~iv 251 (345)
T cd08293 212 NVAERLR---ELCPEGVDVYFDNV-G----G----E-ISDTVISQMNENSHII 251 (345)
T ss_pred CHHHHHH---HHCCCCceEEEECC-C----c----H-HHHHHHHHhccCCEEE
Confidence 111 111 11235699998532 1 1 1 2355678899999988
No 370
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=85.14 E-value=0.79 Score=26.84 Aligned_cols=21 Identities=33% Similarity=0.819 Sum_probs=17.2
Q ss_pred cccccCCccCCHHHHHHHHHH
Q 010913 103 RCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
.|..|+.+|.+..++..||..
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHH
T ss_pred CCcCCCCcCCcHHHHHHHHHh
Confidence 488999999999999999975
No 371
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=85.12 E-value=15 Score=35.90 Aligned_cols=109 Identities=17% Similarity=0.269 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcCCCCHhHHHHHHc----CC-CEEEEEeCCHHHHHHH-HHHHHh-CCCCCCCCCCCCCCCCCCceEEEec
Q 010913 295 LMKGAVVMDIGCGTGILSLFAAQA----GA-SRVIAVEASEKMAAVA-TQIAKD-NDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~ls~~la~~----G~-~~V~gvD~S~~~i~~A-~~~~~~-~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
+..+...+|+|.|+..-+..+..+ |. .+.+.||+|+.++... +..... .++ .|.-+.+
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l---------------~v~~l~~ 140 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL---------------EVNALCG 140 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC---------------eEeehhh
Confidence 345789999999998655554443 32 4899999999888643 333333 233 5667777
Q ss_pred chhhcccccCCCCCceeEEEeccccccc--cChhhHHHHHHHHhccccCCcEEeccC
Q 010913 368 MVEELGESMQIQPHSVDVLVSEWMGYCL--LYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 368 d~~~l~~~l~~~~~~fDvIvs~~~~~~l--~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
+.+..-.. ++...--+++- +|..+ +.+..-..+|.++...|+||-.+++.+
T Consensus 141 ~~~~~La~--~~~~~~Rl~~f--lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 141 DYELALAE--LPRGGRRLFVF--LGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred hHHHHHhc--ccCCCeEEEEE--ecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 77543211 22233233321 22222 345566789999999999999988543
No 372
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.08 E-value=0.47 Score=40.27 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=27.1
Q ss_pred ceeEEEeccc--cccc-cChhhHHHHHHHHhccccCCcEEe
Q 010913 382 SVDVLVSEWM--GYCL-LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 382 ~fDvIvs~~~--~~~l-~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+||+|+|-.+ -.+| .....+..++..+.+.|+|||.++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li 41 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI 41 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE
Confidence 4899998432 1112 124557889999999999999998
No 373
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=84.99 E-value=7.2 Score=39.15 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 293 ~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
..+.++.+||-+||| .|..+..+|++ |. +|++++.++...+.++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELAR 203 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 356778899999987 57677777777 77 8999999988776653
No 374
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.89 E-value=4.5 Score=46.00 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=72.9
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|.-||+|+ +.++..+|.+|. .|+.+|.++..++.+.+.+.. .|... .. .......+|++. .+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~---~~-~~~~~~~~i~~~-~~~ 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKID---GA-KMAGVLSSIRPT-LDY 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---hh-hHHHHHhCeEEe-CCH
Confidence 5799999998 346667788898 999999999999877765532 11100 00 000001234332 222
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG 431 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~ 431 (497)
.. -...|+|+=. ......--..++.++.++++|+.+|.-++.++....+.
T Consensus 388 ~~--------~~~aDlViEa----v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la 437 (715)
T PRK11730 388 AG--------FERVDVVVEA----VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLA 437 (715)
T ss_pred HH--------hcCCCEEEec----ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH
Confidence 22 2457888832 23444556789999999999999998887776554443
No 375
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=84.80 E-value=6.6 Score=39.54 Aligned_cols=98 Identities=19% Similarity=0.150 Sum_probs=59.1
Q ss_pred hCCCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEe
Q 010913 291 ENPSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQ 366 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~ 366 (497)
....+.+|.+||-.|+ |.|.++..+|+. |+ +|++++.++.-.+.+++ .|. +.+ ....
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa--------------~~vi~~~~ 192 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGF--------------DVAFNYKT 192 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCC--------------CEEEeccc
Confidence 3445678999999985 357777778887 87 89999999876665543 343 111 1111
Q ss_pred -cchhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 367 -GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 367 -gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+...... ....+.+|+|+-.. + . ..+....++|+++|+++
T Consensus 193 ~~~~~~~~~--~~~~~gvdvv~d~~-G----~-----~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 193 VKSLEETLK--KASPDGYDCYFDNV-G----G-----EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred cccHHHHHH--HhCCCCeEEEEECC-C----H-----HHHHHHHHHhCcCcEEE
Confidence 01111100 11234699998432 1 1 13456678899999998
No 376
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.73 E-value=2.1 Score=44.58 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHH
Q 010913 297 KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVA 336 (497)
Q Consensus 297 ~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A 336 (497)
++.+|+-+|+|. |..+...++. |+ +|+++|.++.-++.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQL 206 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH
Confidence 567799999984 5555555554 88 799999998654433
No 377
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.61 E-value=5.5 Score=36.60 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=61.5
Q ss_pred EEcCCCCHhHHHHHHc-C-CCEEEEEeCCHH--HHHHH---HHHHHhCCCCCCCCCCCCCCCCCCceE-EEecchhhccc
Q 010913 303 DIGCGTGILSLFAAQA-G-ASRVIAVEASEK--MAAVA---TQIAKDNDFWWDRPQSEGNINNAGKME-VVQGMVEELGE 374 (497)
Q Consensus 303 DvGCGtG~ls~~la~~-G-~~~V~gvD~S~~--~i~~A---~~~~~~~gl~~~~~~~~~~~~~~~~i~-~i~gd~~~l~~ 374 (497)
=||=|.=.+|+.|+++ + ...++|.-.... ..+.. ..++.... ...+. +..-|+..+..
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~--------------~~g~~V~~~VDat~l~~ 67 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR--------------ELGVTVLHGVDATKLHK 67 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh--------------hcCCccccCCCCCcccc
Confidence 3566666677778877 5 557777655533 22221 12222211 11222 33456666654
Q ss_pred ccCCCCCceeEEEeccccccc----------cChhhHHHHHHHHhccccCCcEEeccC
Q 010913 375 SMQIQPHSVDVLVSEWMGYCL----------LYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l----------~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
........||.|+-+.+...- .+...+..++..+.++|+++|.+.+..
T Consensus 68 ~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 68 HFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred cccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 444467899999966533220 122356788899999999999987443
No 378
>PRK13699 putative methylase; Provisional
Probab=84.55 E-value=1.4 Score=42.59 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=39.2
Q ss_pred EEEecchhhcccccCCCCCceeEEEecccccccc-------------ChhhHHHHHHHHhccccCCcEEec
Q 010913 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-------------YESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 363 ~~i~gd~~~l~~~l~~~~~~fDvIvs~~~~~~l~-------------~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
++++||..++-. .++++++|+|+..+. |.+. +..-...++.++.|+|||||.++.
T Consensus 3 ~l~~gD~le~l~--~lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMA--RFPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHH--hCCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 678888876532 367899999999863 3211 112245788999999999999873
No 379
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.42 E-value=4.8 Score=43.24 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Q 010913 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339 (497)
Q Consensus 298 ~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~ 339 (497)
.-+++|+-||.|.+++.+-.+|...|.++|+++.+.+.-+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHH
Confidence 459999999999999999999988889999998665544433
No 380
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=84.33 E-value=3.6 Score=40.28 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-C--------CCEEEEEeCCHHHHHHHHHHHH
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-G--------ASRVIAVEASEKMAAVATQIAK 341 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G--------~~~V~gvD~S~~~i~~A~~~~~ 341 (497)
.+-+|+++|+|+|.++.-+.+. . ..+++-||+|+.+.+..++.+.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3479999999999998877764 1 1389999999998877666653
No 381
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.32 E-value=5.6 Score=40.40 Aligned_cols=99 Identities=22% Similarity=0.358 Sum_probs=58.9
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEecc
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQGM 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~gd 368 (497)
...+.++.+||-.|+|. |.++..+|++ |+..|+++..++.....+++. |. +.+ .....+
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~--------------~~vi~~~~~~ 218 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GA--------------THTVNVRTED 218 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC--------------cEEecccccc
Confidence 44567888998888765 5666677776 875599999888776655442 22 111 111111
Q ss_pred ----hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 ----VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ----~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...+.. ......+|+|+... + . ...+....+.|+++|.++
T Consensus 219 ~~~~~~~~~~--~~~~~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 219 TPESAEKIAE--LLGGKGPDVVIECT-G----A----ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred chhHHHHHHH--HhCCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 111110 12345699999532 1 1 125566678999999987
No 382
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.30 E-value=2.5 Score=41.46 Aligned_cols=89 Identities=21% Similarity=0.314 Sum_probs=65.5
Q ss_pred CCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 294 ~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.+.+|...+|+|+-.|..+..+.+++- .|++||..+ |. .... . .+.|+....|...+.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~-ma---~sL~-d----------------tg~v~h~r~DGfk~~ 265 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGP-MA---QSLM-D----------------TGQVTHLREDGFKFR 265 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccch-hh---hhhh-c----------------ccceeeeeccCcccc
Confidence 457899999999999999999999988 999999876 32 2221 1 257888888888874
Q ss_pred cccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCC
Q 010913 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (497)
Q Consensus 374 ~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~Lkpg 415 (497)
| ....+|-.||..+ +.+..+-..+..+|..|
T Consensus 266 ---P-~r~~idWmVCDmV-------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 266 ---P-TRSNIDWMVCDMV-------EKPARVAALIAKWLVNG 296 (358)
T ss_pred ---c-CCCCCceEEeehh-------cCcHHHHHHHHHHHHcc
Confidence 3 3678999998742 34455555566777665
No 383
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=84.21 E-value=8.1 Score=39.36 Aligned_cols=99 Identities=25% Similarity=0.316 Sum_probs=57.3
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV- 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~- 369 (497)
..+.+|.+||-.|+|. |.++..+|+. |+.+|++++.++...+.+++ .|.. ..+.....+.
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~-------------~~i~~~~~~~~ 230 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT-------------IVLDPTEVDVV 230 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-------------EEECCCccCHH
Confidence 4556788999998653 4555666666 87789999999887766643 2320 0111111111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. ......+|+|+-.. + . ...+....+.|+++|.++
T Consensus 231 ~~l~~--~~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 231 AEVRK--LTGGGGVDVSFDCA-G----V----QATLDTAIDALRPRGTAV 269 (351)
T ss_pred HHHHH--HhCCCCCCEEEECC-C----C----HHHHHHHHHhccCCCEEE
Confidence 11110 01234599998532 1 1 124566678899999987
No 384
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=83.95 E-value=5 Score=40.83 Aligned_cols=92 Identities=23% Similarity=0.302 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc----h
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM----V 369 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd----~ 369 (497)
.++.+||-.|+|. |.++..+|++ |+++|++++.++.....+.+ .|. + .++... .
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~--------------~--~~~~~~~~~~~ 233 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGA--------------D--VVVNGSDPDAA 233 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC--------------c--EEecCCCccHH
Confidence 4688888888763 5666667777 88789999998877665543 232 0 111111 1
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+. ....+.+|+++... + . ...+....+.|+++|.++
T Consensus 234 ~~~~---~~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 234 KRII---KAAGGGVDAVIDFV-N----N----SATASLAFDILAKGGKLV 271 (350)
T ss_pred HHHH---HHhCCCCcEEEECC-C----C----HHHHHHHHHHhhcCCeEE
Confidence 1111 01122689998532 1 1 224666678899999987
No 385
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=83.71 E-value=3.3 Score=42.01 Aligned_cols=99 Identities=25% Similarity=0.348 Sum_probs=57.1
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
....++.+||-.|+|. |..+..+|++ |+..|+++..++...+.+++ .|.. ..+........
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~-------------~~~~~~~~~~~ 217 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD-------------DTINPKEEDVE 217 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-------------EEecCccccHH
Confidence 3456788999998765 6666667776 87559999988876655432 2320 01111100111
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+.. ..+...+|+|+... .. ...+..+.+.|+++|.++
T Consensus 218 ~~~~--~~~~~~~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v 255 (343)
T cd08236 218 KVRE--LTEGRGADLVIEAA-----GS----PATIEQALALARPGGKVV 255 (343)
T ss_pred HHHH--HhCCCCCCEEEECC-----CC----HHHHHHHHHHhhcCCEEE
Confidence 1110 02234599998531 11 234566678899999987
No 386
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=83.62 E-value=7.8 Score=39.85 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=28.1
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHH
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAA 334 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~ 334 (497)
..+|.+||-.|+|. |.++..+|++ |+ +|++++.++....
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~ 218 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKRE 218 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHH
Confidence 35788888888764 6666777777 77 7888888775443
No 387
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.57 E-value=5.4 Score=39.68 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=52.3
Q ss_pred EEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 300 VVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 300 ~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+|.-||+|. |.++..++++|. +|+++|.++..++.+.+. |. +.....+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~----------------~~~~~~~~~~------ 54 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL----------------VDEASTDLSL------ 54 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC----------------cccccCCHhH------
Confidence 467788886 446666777777 899999998776655432 22 1111111111
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
....|+|+... .......++..+...++|+.+ +.+..
T Consensus 55 --~~~aDlVilav------p~~~~~~~~~~l~~~l~~~~i-i~d~~ 91 (279)
T PRK07417 55 --LKDCDLVILAL------PIGLLLPPSEQLIPALPPEAI-VTDVG 91 (279)
T ss_pred --hcCCCEEEEcC------CHHHHHHHHHHHHHhCCCCcE-EEeCc
Confidence 23579888432 234445677778788877654 44443
No 388
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=82.92 E-value=7.9 Score=40.26 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHH
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEK 331 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~ 331 (497)
.+|.+||-.|+|. |.++..+|++ |+ +|++++.++.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~ 213 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSE 213 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChH
Confidence 4788999999874 6667777777 88 7999998754
No 389
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=82.90 E-value=6.2 Score=40.01 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=59.6
Q ss_pred hCCCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec
Q 010913 291 ENPSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g 367 (497)
....+.+|.+||-.|+ |.|.++..+|++ |+ +|+++..++.-.+.+++. .|.. ..+..-..
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~-------------~vi~~~~~ 207 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFD-------------DAFNYKEE 207 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCc-------------eeEEcCCc
Confidence 3445678999999997 346677777777 88 799999888766655542 2320 01111111
Q ss_pred -chhh-cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 -MVEE-LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 -d~~~-l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+..+ +. ......+|+|+-.. + ...+....++|+++|.++
T Consensus 208 ~~~~~~i~---~~~~~gvd~v~d~~-g---------~~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 208 PDLDAALK---RYFPNGIDIYFDNV-G---------GKMLDAVLLNMNLHGRIA 248 (338)
T ss_pred ccHHHHHH---HhCCCCcEEEEECC-C---------HHHHHHHHHHhccCcEEE
Confidence 2111 11 01125799998432 1 134556678999999987
No 390
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.75 E-value=0.32 Score=43.85 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=35.3
Q ss_pred CCCCCceeEEEeccccccccC--hhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 377 QIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~--~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+|.++++|+|+++- ++.| .....++++.++|.|||||.|-+..+..
T Consensus 42 ~F~dns~d~iyaeH---vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 42 MFEDNSVDAIYAEH---VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cCCCcchHHHHHHH---HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 58899999999654 4443 3456788999999999999998655543
No 391
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.63 E-value=5.8 Score=39.52 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=46.9
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHH-HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEK-MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~-~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+.. ........+...+ .++.++.+|+.+
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~~ 107 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG---------------VKCLLIPGDVSD 107 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC---------------CeEEEEEccCCC
Confidence 467899999987775 4555666788 8888887642 2222233333332 367788888755
Q ss_pred cccccC-C-----CCCceeEEEecc
Q 010913 372 LGESMQ-I-----QPHSVDVLVSEW 390 (497)
Q Consensus 372 l~~~l~-~-----~~~~fDvIvs~~ 390 (497)
...... + ..+.+|+||.+.
T Consensus 108 ~~~~~~~~~~i~~~~~~iD~lI~~A 132 (290)
T PRK06701 108 EAFCKDAVEETVRELGRLDILVNNA 132 (290)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 321000 0 114689888653
No 392
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=82.51 E-value=2.5 Score=42.73 Aligned_cols=98 Identities=23% Similarity=0.359 Sum_probs=58.3
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV- 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~- 369 (497)
..+.++.+||-.|+|. |..+..+|+. |. +|+++..++...+.+++. +.. ..+.....+.
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~----g~~-------------~v~~~~~~~~~ 216 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFAREL----GAD-------------DTINVGDEDVA 216 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHh----CCC-------------EEecCcccCHH
Confidence 3557888999998764 6677777777 77 899998888777655432 210 1111111111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. ..+...+|+|+... + . ...+..+.+.|+++|.++
T Consensus 217 ~~l~~--~~~~~~vd~vld~~-g----~----~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 217 ARLRE--LTDGEGADVVIDAT-G----N----PASMEEAVELVAHGGRVV 255 (337)
T ss_pred HHHHH--HhCCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 11110 02345699999532 1 1 224566678899999987
No 393
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=82.23 E-value=0.66 Score=27.81 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.7
Q ss_pred ceecCCCCCCCHHHHHHHhhhhcC
Q 010913 48 LCLFCDAGYSSCDTLFEHCRLSHC 71 (497)
Q Consensus 48 ~CLFC~~~~~s~~~~l~Hm~~~H~ 71 (497)
.|-+|+...+ ...+..||+..|+
T Consensus 2 ~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 2 KCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp E-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCcCC-HHHHHHHHHhhCc
Confidence 6899999887 8899999999885
No 394
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=82.20 E-value=6.9 Score=44.48 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=72.6
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC-------CCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------DFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~-------gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|--||+|+ +.++..+|.+|. .|+.+|.++..++.+++.+... |... ... ....-.+|++. .+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~---~~~-~~~~~~~i~~~-~~~ 387 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRIT---PAK-MAGVLNGITPT-LSY 387 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---hhh-HHHHHhCeEEe-CCH
Confidence 5799999997 345667777888 9999999999998877665421 1000 000 00000123322 112
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG 431 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~ 431 (497)
.. -...|+|+=. +.....--..++.++.++++|+.+|.-++.++....+.
T Consensus 388 ~~--------~~~aDlViEa----v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia 437 (714)
T TIGR02437 388 AG--------FDNVDIVVEA----VVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLA 437 (714)
T ss_pred HH--------hcCCCEEEEc----CcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 11 2468888832 33444556789999999999999999888777554443
No 395
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=82.13 E-value=5.4 Score=34.20 Aligned_cols=87 Identities=21% Similarity=0.224 Sum_probs=59.2
Q ss_pred CEEEEEcCCCCH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 299 AVVMDIGCGTGI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 299 ~~VLDvGCGtG~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
++|++||-|-=. .+..++++|+ .|+++|+.+. .|. ..+.++..|+.+..- .
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a~----------------------~g~~~v~DDitnP~~--~ 66 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TAP----------------------EGLRFVVDDITNPNI--S 66 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cCc----------------------ccceEEEccCCCccH--H
Confidence 489999988643 5777888898 8999999986 111 256888888877541 1
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
+ -...|+|.| +...+.+.+.+-.+.+.++-.-++.|
T Consensus 67 i-Y~~A~lIYS------iRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 67 I-YEGADLIYS------IRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred H-hhCccceee------cCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 1 245788885 44556666666677777766555543
No 396
>PHA00732 hypothetical protein
Probab=81.89 E-value=1.5 Score=35.03 Aligned_cols=46 Identities=24% Similarity=0.454 Sum_probs=36.0
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
|..|-.|++.|.+...+-.||+..|. + | .|..||+.|.+ +..|+..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----------~-----------~--------~C~~CgKsF~~---l~~H~~~ 46 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT----------L-----------T--------KCPVCNKSYRR---LNQHFYS 46 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC----------C-----------C--------ccCCCCCEeCC---hhhhhcc
Confidence 35799999999999999999986653 1 1 49999999986 5677643
No 397
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=81.82 E-value=6.5 Score=40.20 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=59.3
Q ss_pred CCCCCCCCEEEEEcCCC--CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 292 NPSLMKGAVVMDIGCGT--GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt--G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
...+.+|.+||-.|+.. |.+++.+|++ |+ .++++--++.-.+.++ ..|-. ..+.+...+
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~----~lGAd-------------~vi~y~~~~ 198 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLK----ELGAD-------------HVINYREED 198 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHH----hcCCC-------------EEEcCCccc
Confidence 45567799999999654 5678888888 87 6777777765443333 33420 123333333
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.+--.. ......+|+|+... + ...+....+.|+++|.++
T Consensus 199 ~~~~v~~-~t~g~gvDvv~D~v-G---------~~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 199 FVEQVRE-LTGGKGVDVVLDTV-G---------GDTFAASLAALAPGGRLV 238 (326)
T ss_pred HHHHHHH-HcCCCCceEEEECC-C---------HHHHHHHHHHhccCCEEE
Confidence 3221100 12345799999542 1 234555678899999988
No 398
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.76 E-value=5 Score=37.64 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=70.0
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHc----CC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 010913 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (497)
Q Consensus 282 ~~~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~----G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~ 356 (497)
.-.|...|.+ .++..|+++|.-.|..+++.|.. |. .+|+++|++-..+..+...
T Consensus 58 ~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------------- 116 (237)
T COG3510 58 MWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------------- 116 (237)
T ss_pred HHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------------
Confidence 3355555544 45689999999999988877764 51 3899999986554322221
Q ss_pred CCCCceEEEecchhhcccccC---CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccC
Q 010913 357 NNAGKMEVVQGMVEELGESMQ---IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (497)
Q Consensus 357 ~~~~~i~~i~gd~~~l~~~l~---~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~ 422 (497)
.++|.++.|+..+..-..+ ...+.--+.++.- .-++....-+.|+...++|.-|-+++...
T Consensus 117 --~p~i~f~egss~dpai~eqi~~~~~~y~kIfvilD---sdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 117 --VPDILFIEGSSTDPAIAEQIRRLKNEYPKIFVILD---SDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred --CCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEec---CCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 1589999998766431000 1112222223211 22334455667788889999999887433
No 399
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=81.58 E-value=8.8 Score=38.35 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
...+.++.+||-.|+|. |.....+++. |+ +|+++..++...+.+++ .|. ..+...
T Consensus 150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~--------------~~~~~~---- 206 (319)
T cd08242 150 QVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGV--------------ETVLPD---- 206 (319)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCC--------------cEEeCc----
Confidence 34567889999998653 4445555655 87 69999999877766654 333 111111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
... .....+|+|+... + . ...+....+.|+++|.++.
T Consensus 207 ~~~-----~~~~~~d~vid~~-g----~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 207 EAE-----SEGGGFDVVVEAT-G----S----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ccc-----ccCCCCCEEEECC-C----C----hHHHHHHHHHhhcCCEEEE
Confidence 111 2345699998531 1 1 2244556678999999873
No 400
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=81.35 E-value=24 Score=33.74 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=64.4
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCCCH--hHHH--HHH-cCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 010913 286 RQAILENPSLMKGAVVMDIGCGTGI--LSLF--AAQ-AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~VLDvGCGtG~--ls~~--la~-~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~ 360 (497)
..+|-....-..-+.++++.|+.|. .++. +|. +..++++.|-+.+......++.+...++. +
T Consensus 30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-------------~ 96 (218)
T PF07279_consen 30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-------------D 96 (218)
T ss_pred HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-------------c
Confidence 3444444444455788999666442 2333 332 22348999999988777777887777762 4
Q ss_pred ceEEEecc-hhhcccccCCCCCceeEEEeccccccccChhhHH-HHHHHHhccccCCcEEe
Q 010913 361 KMEVVQGM-VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLS-SVLFARDQWLKPGGAIL 419 (497)
Q Consensus 361 ~i~~i~gd-~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~-~vL~~~~r~LkpgG~li 419 (497)
.++|+.|+ .+++- + .-..+|.++... - ..+.. .+|+.+. +.|.|.++
T Consensus 97 ~vEfvvg~~~e~~~---~-~~~~iDF~vVDc---~---~~d~~~~vl~~~~--~~~~GaVV 145 (218)
T PF07279_consen 97 VVEFVVGEAPEEVM---P-GLKGIDFVVVDC---K---REDFAARVLRAAK--LSPRGAVV 145 (218)
T ss_pred cceEEecCCHHHHH---h-hccCCCEEEEeC---C---chhHHHHHHHHhc--cCCCceEE
Confidence 67998887 44442 1 234688888432 1 12333 5555433 55667665
No 401
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.03 E-value=14 Score=36.67 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=61.8
Q ss_pred EEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHH-------HhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 300 VVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIA-------KDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 300 ~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~-------~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
+|--||+|. +.++..++++|. .|+++|.++..++.+++.+ ...|..... ... ....++.+. .+..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~---~~~-~~~~~l~~~-~~~~ 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA---DKE-AALARITGT-TDLD 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH---HHH-HHHhCeEEe-CCHH
Confidence 577889986 446667777787 8999999999887665432 222210000 000 000123221 2222
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
. ....|+|+-.. -........++.++.++++|+.+++.++..+
T Consensus 79 ~--------~~~aDlVi~av----~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~ 121 (282)
T PRK05808 79 D--------LKDADLVIEAA----TENMDLKKKIFAQLDEIAKPEAILATNTSSL 121 (282)
T ss_pred H--------hccCCeeeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 2 24578888421 1122233588899999999998887665554
No 402
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=80.82 E-value=9.8 Score=39.05 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=57.5
Q ss_pred CCCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec--
Q 010913 292 NPSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-- 367 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g-- 367 (497)
...+.++.+||-.|+| .|..+..++++ |+..|++++.++...+.+++ .|. ..++..
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~----------------~~vv~~~~ 236 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGA----------------THTVNASE 236 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCC----------------eEEeCCCC
Confidence 3456778899988875 35566667776 87569999998876655532 232 111111
Q ss_pred -ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 -MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 -d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ..+.. ..+...+|+++... + . ...+....+.|+++|+++
T Consensus 237 ~~~~~~l~~--~~~~~~vd~vld~~-~----~----~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 237 DDAVEAVRD--LTDGRGADYAFEAV-G----R----AATIRQALAMTRKGGTAV 279 (363)
T ss_pred ccHHHHHHH--HcCCCCCCEEEEcC-C----C----hHHHHHHHHHhhcCCeEE
Confidence 11 11110 02245699998532 1 0 234566778899999987
No 403
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=80.79 E-value=8.9 Score=43.49 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=69.7
Q ss_pred CEEEEEcCCCCH--hHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecc
Q 010913 299 AVVMDIGCGTGI--LSLFAA-QAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 299 ~~VLDvGCGtG~--ls~~la-~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
++|.-||+|+=. ++..+| ++|. .|+.+|.++..++.+..++.. .+... .. .......+|++. .+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~i~~~-~~ 378 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMT---PA-ERDNQMALITGT-TD 378 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---HH-HHHHHHcCeEEe-CC
Confidence 579999999822 344455 5688 899999999998887765532 11100 00 000001234333 22
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeee
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF 430 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~ 430 (497)
... -...|+|+=. ......--..++.++.++++|+.+|.-++.++....+
T Consensus 379 ~~~--------~~~adlViEa----v~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~l 428 (699)
T TIGR02440 379 YRG--------FKDVDIVIEA----VFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQI 428 (699)
T ss_pred hHH--------hccCCEEEEe----ccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHH
Confidence 222 2457888732 2344455678999999999999999887777655444
No 404
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=80.71 E-value=8.2 Score=39.01 Aligned_cols=43 Identities=28% Similarity=0.354 Sum_probs=32.2
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
.+.++.+||-.|+|. |..+..+|++ |+ +|++++.++.-.+.++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLAR 204 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Confidence 567788999999654 5556666776 87 7999999887666654
No 405
>PLN02702 L-idonate 5-dehydrogenase
Probab=80.70 E-value=7.8 Score=39.79 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=33.0
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.++.+||-+|+|. |..+..+|++ |+..|++++.++...+.+++
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 224 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ 224 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4456788999998753 5566667776 88779999998766655443
No 406
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=80.63 E-value=1.9 Score=42.41 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=50.9
Q ss_pred CCCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceeh-hhhhHhhccccc--ccccCCccCCHHHHHHH
Q 010913 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKL-INYIRSQVAENR--CWICGLTCQSNQDLQNH 120 (497)
Q Consensus 44 ~~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKl-iNyiR~~~~~~~--c~~C~~~~~~~~~~~~H 120 (497)
.....|-.|++++.++-++-.|.+ .|+.-..= ..-|-. +.+-.| =--||....+.= |..|+++|.+...|+.|
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHir-TH~l~c~C--~iCGKa-FSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH 234 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIR-THTLPCEC--GICGKA-FSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH 234 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhh-ccCCCccc--cccccc-ccchHHhhcccccccCCCCccCCcccchhcchHHHHHH
Confidence 345789999999999999999988 45531110 000111 112222 225676654433 99999999999999999
Q ss_pred HHHhc
Q 010913 121 LHEAY 125 (497)
Q Consensus 121 m~~~~ 125 (497)
|+-..
T Consensus 235 mQTHS 239 (279)
T KOG2462|consen 235 MQTHS 239 (279)
T ss_pred HHhhc
Confidence 99653
No 407
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.59 E-value=15 Score=36.64 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=62.3
Q ss_pred CEEEEEcCCCC--HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC-------CCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGTG--ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------DFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGtG--~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~-------gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|.=||+|+- .++..++++|. .|+.+|.++..++.+.+.+..+ |.... ... .....++++. .+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~---~~~-~~~~~~i~~~-~~~ 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISE---EAR-AAALARISTA-TDL 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH---HHH-HHHHhCeEee-CCH
Confidence 56888999963 35566677787 8999999998887765543321 21000 000 0000123322 222
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeE
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMF 426 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~ 426 (497)
.. -...|+|+... .........++..+...++|+.+++.++.++.
T Consensus 79 ~~--------~~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 123 (292)
T PRK07530 79 ED--------LADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNTSSIS 123 (292)
T ss_pred HH--------hcCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 22 13578888432 11223345677888899999988875555543
No 408
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=80.20 E-value=9.2 Score=38.54 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=51.2
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~-~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|.-||+|. | .++..+++.|. .+|+++|.++..++.+++ .|+ ... +..+..+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~---------------~~~-~~~~~~~~--- 63 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGL---------------GDR-VTTSAAEA--- 63 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCC---------------Cce-ecCCHHHH---
Confidence 5788999886 3 34455555564 489999999876654432 332 111 11122221
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
....|+|+... .......++..+..+++||++++
T Consensus 64 ----~~~aDvViiav------p~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 64 ----VKGADLVILCV------PVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ----hcCCCEEEECC------CHHHHHHHHHHHHhhCCCCCEEE
Confidence 13578888543 12234556677777788887654
No 409
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.11 E-value=10 Score=37.90 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=61.2
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC--CCCCCCCCCCCCC----CCCCceEEEecchh
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN--DFWWDRPQSEGNI----NNAGKMEVVQGMVE 370 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~--gl~~~~~~~~~~~----~~~~~i~~i~gd~~ 370 (497)
++|.-||+|+ | .++..++++|. .|+.+|.++..++.+++.+... ++........... ....++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899996 3 35666777787 8999999999988776654432 1100000000000 000112211 1111
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCce
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~ 424 (497)
. -...|+|+-.. .........++.++.++++|+.+++-.+..
T Consensus 82 ~--------~~~aDlVieav----~e~~~~k~~~~~~l~~~~~~~~il~S~tsg 123 (291)
T PRK06035 82 S--------LSDADFIVEAV----PEKLDLKRKVFAELERNVSPETIIASNTSG 123 (291)
T ss_pred H--------hCCCCEEEEcC----cCcHHHHHHHHHHHHhhCCCCeEEEEcCCC
Confidence 1 13478888432 112223567788888899998877644443
No 410
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=80.07 E-value=1.1 Score=36.64 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=25.5
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhh
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHS 76 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~ 76 (497)
...|.+|...|.+...+..||+..|...+..
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 5899999999999999999999988776543
No 411
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.04 E-value=5.2 Score=40.49 Aligned_cols=43 Identities=33% Similarity=0.360 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 294 ~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
.+.||++|--+|.| -|.++..+|++ |. +|+++|-+..--+.|-
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~ 222 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAI 222 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHH
Confidence 34589988888866 58899999999 88 9999999975444333
No 412
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=79.74 E-value=13 Score=37.61 Aligned_cols=99 Identities=24% Similarity=0.379 Sum_probs=55.6
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV- 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~- 369 (497)
..+.++.+||-.|+|. |..+..+|+. |+.+|++++.++.....+++ .|.. .-+.....+.
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-------------~~v~~~~~~~~ 224 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGAT-------------HTVNSAKGDAI 224 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC-------------ceeccccccHH
Confidence 3456788888887753 4455556666 85589999998866555543 2320 1112111111
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. ......+|+|+... + . ...+..+.+.|+++|.++
T Consensus 225 ~~i~~--~~~~~~~d~vld~~-g-------~-~~~~~~~~~~l~~~g~~v 263 (345)
T cd08286 225 EQVLE--LTDGRGVDVVIEAV-G-------I-PATFELCQELVAPGGHIA 263 (345)
T ss_pred HHHHH--HhCCCCCCEEEECC-C-------C-HHHHHHHHHhccCCcEEE
Confidence 11110 02334699998532 1 1 224566678999999987
No 413
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.54 E-value=6.6 Score=37.78 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 298 GAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 298 ~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
+++||-.|++.|+ ++..+++.|+ +|+++..++.............+ .++.++.+|+.+...
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~~~ 65 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRG---------------LALRVEKLDLTDAID 65 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcceEEEeeCCCHHH
Confidence 4578989987665 2344555687 89999988765544444433333 257788888765431
Q ss_pred ccCCCCCceeEEEec
Q 010913 375 SMQIQPHSVDVLVSE 389 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~ 389 (497)
-.......+|+||.+
T Consensus 66 ~~~~~~~~id~vi~~ 80 (257)
T PRK09291 66 RAQAAEWDVDVLLNN 80 (257)
T ss_pred HHHHhcCCCCEEEEC
Confidence 111123478999875
No 414
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=79.28 E-value=11 Score=38.84 Aligned_cols=46 Identities=28% Similarity=0.459 Sum_probs=33.3
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
...+.+|.+||-.|+|. |.++..+|++ |+..|++++.++...+.++
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~ 225 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK 225 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 44567888999888754 4555666666 8867999998887766664
No 415
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=79.17 E-value=14 Score=37.91 Aligned_cols=96 Identities=25% Similarity=0.282 Sum_probs=55.5
Q ss_pred CCCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec---
Q 010913 293 PSLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG--- 367 (497)
Q Consensus 293 ~~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g--- 367 (497)
..+.++.+||-.|+| .|.++..+|+. |+..|++++.++...+.+++ .|. ..++..
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~----------------~~v~~~~~~ 242 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGA----------------THTVNAAKE 242 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC----------------ceEecCCcc
Confidence 344677888877765 35556666666 87559999998876665543 232 111111
Q ss_pred ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ..+.. ......+|+|+... ... ..+....+.|+++|.++
T Consensus 243 ~~~~~l~~--~~~~~~~d~vld~v-----g~~----~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 243 DAVAAIRE--ITGGRGVDVVVEAL-----GKP----ETFKLALDVVRDGGRAV 284 (367)
T ss_pred cHHHHHHH--HhCCCCCCEEEEeC-----CCH----HHHHHHHHHHhcCCEEE
Confidence 11 11110 02345699999532 111 24566678999999987
No 416
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=79.15 E-value=5.8 Score=39.20 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=48.2
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcC------CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG------ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G------~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~ 358 (497)
....+...--+.++..++|+|||.|.+|..++..- ...++.||....-. .+-..++....
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~------------- 71 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDES------------- 71 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCC-------------
Confidence 33444444445677899999999999999999872 24889999865322 23333332210
Q ss_pred CCceEEEecchhhcc
Q 010913 359 AGKMEVVQGMVEELG 373 (497)
Q Consensus 359 ~~~i~~i~gd~~~l~ 373 (497)
...+.=++.|+.+++
T Consensus 72 ~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 72 EPKFERLRIDIKDLD 86 (259)
T ss_pred CCceEEEEEEeeccc
Confidence 025677777887775
No 417
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.99 E-value=12 Score=37.45 Aligned_cols=109 Identities=13% Similarity=0.234 Sum_probs=64.2
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
.+|--||+|+ +.++..++++|. .|+.+|.++..++.+++.+.. .|.... . .......++++ ..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~---~-~~~~~~~~l~~-~~~~ 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTE---R-ERDAALARLRF-TTDL 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCCh---h-hHHHHHhCeEe-eCCH
Confidence 4788899996 345666777788 999999999999887766432 111000 0 00000012322 2333
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccc-cCCcEEeccCcee
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL-KPGGAILPDTATM 425 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~L-kpgG~li~~~~~~ 425 (497)
..+ ...|+|+-. ......-...++..+.+++ +|+.++.-++.++
T Consensus 80 ~~~--------~~~d~ViEa----v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~ 124 (286)
T PRK07819 80 GDF--------ADRQLVIEA----VVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI 124 (286)
T ss_pred HHh--------CCCCEEEEe----cccCHHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 222 357888843 2233344556777888888 7888887666554
No 418
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=78.97 E-value=6 Score=41.36 Aligned_cols=47 Identities=21% Similarity=0.150 Sum_probs=33.9
Q ss_pred hCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHH
Q 010913 291 ENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 291 ~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~ 338 (497)
+.+.+.++.+||-|..|. ..++.++..+.++|+|||+|+..+...+=
T Consensus 29 ~aL~i~~~d~vl~ItSaG-~N~L~yL~~~P~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAG-CNALDYLLAGPKRIHAVDLNPAQNALLEL 75 (380)
T ss_pred HHhCCCCCCeEEEEccCC-chHHHHHhcCCceEEEEeCCHHHHHHHHH
Confidence 345678999999996554 44444455566799999999988876553
No 419
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.89 E-value=15 Score=36.70 Aligned_cols=110 Identities=10% Similarity=0.025 Sum_probs=61.4
Q ss_pred CEEEEEcCCCC--HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC--------CCCCCCCCCCCCCCCCCceEEEecc
Q 010913 299 AVVMDIGCGTG--ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN--------DFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 299 ~~VLDvGCGtG--~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~--------gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
.+|.-||+|+- .++..++++|. .|+.+|.++..++.+++.++.. .+.. .........++++. .+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~-~d 77 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATK----EAPAEAALNRITLT-TD 77 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh----hhhHHHHHcCeEEe-CC
Confidence 46888899863 34555666677 8999999999888777654211 1100 00000000233322 23
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
..+. -...|+|+.... ....-...++.++...++++.+|..++.++
T Consensus 78 ~~~a-------~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~sntSt~ 123 (287)
T PRK08293 78 LAEA-------VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFATNSSTL 123 (287)
T ss_pred HHHH-------hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEEECcccC
Confidence 3321 245788885321 122345677888888888887775444443
No 420
>PRK07806 short chain dehydrogenase; Provisional
Probab=78.76 E-value=15 Score=35.13 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHH-HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEK-MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~-~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
.++++||-.|++.|+ +...+++.|. +|+++..+.. ..+.....++..+ .++.++.+|+.+
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~---------------~~~~~~~~D~~~ 67 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG---------------GRASAVGADLTD 67 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC---------------CceEEEEcCCCC
Confidence 457899999976654 3344455687 7888876532 2222222232222 357788888766
Q ss_pred cccccCC------CCCceeEEEeccccccc----------cChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQI------QPHSVDVLVSEWMGYCL----------LYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~------~~~~fDvIvs~~~~~~l----------~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
...-..+ .-+.+|++|.+.-.... ........++..+.+.++.+|.++
T Consensus 68 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv 131 (248)
T PRK07806 68 EESVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVV 131 (248)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEE
Confidence 4310000 11358887754311000 001113356666666666666655
No 421
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.43 E-value=8.3 Score=38.49 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=60.6
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|.-||+|. +.++..++++|. .|+.+|.++..++.+.+.+.. .+... .... .....++++. .+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~-~~~~~~i~~~-~~~ 75 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLT---EAAR-QAALARLSYS-LDL 75 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---HHHH-HHHHhCeEEe-CcH
Confidence 3678899985 235566677787 899999999998887654321 11000 0000 0000122222 222
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
.+. -...|+|+.... ........++..+.+.++|+.++..++.++
T Consensus 76 ~~~-------~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~tSt~ 120 (288)
T PRK09260 76 KAA-------VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNTSTM 120 (288)
T ss_pred HHh-------hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 221 245799885321 112224566777888899988776555554
No 422
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.38 E-value=1.2 Score=49.30 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=70.5
Q ss_pred cceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcC------CccCceehhhhhHhh-----ccc--ccccccCCccCC
Q 010913 47 FLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRL------DFYGSFKLINYIRSQ-----VAE--NRCWICGLTCQS 113 (497)
Q Consensus 47 ~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~l------d~Y~~iKliNyiR~~-----~~~--~~c~~C~~~~~~ 113 (497)
-.|++| ..|.++..+-.||...|++..-.+.-..-- ..|.+.-|-+-++.- ... ..|.+|.+.|-.
T Consensus 116 ~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld 194 (669)
T KOG2231|consen 116 KECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLD 194 (669)
T ss_pred CCCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhcc
Confidence 368888 778899999999999999977543311111 123333333333321 122 349999999999
Q ss_pred HHHHHHHHHHh----ccCc---ccCCCCCCCCcccccccCccccccccC
Q 010913 114 NQDLQNHLHEA----YNLK---ETKLRWDKEKYLKPFMQDDKLLYSFGE 155 (497)
Q Consensus 114 ~~~~~~Hm~~~----~~~~---~~~~~w~~d~yl~Pv~e~D~lL~~~d~ 155 (497)
...++.||... ..|. +....+.+-.+|.=-+-.+.+||.++.
T Consensus 195 ~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE~~~ 243 (669)
T KOG2231|consen 195 DDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCEEEF 243 (669)
T ss_pred HHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcCccccccc
Confidence 99999999943 3442 224456677777777778888885443
No 423
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=78.28 E-value=0.94 Score=27.30 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.7
Q ss_pred cccccCCccCCHHHHHHHHHHhc
Q 010913 103 RCWICGLTCQSNQDLQNHLHEAY 125 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~~~ 125 (497)
.|-.|+..|.+...++.||+.+.
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~s~~ 24 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLRSKK 24 (25)
T ss_dssp EETTTTEEESSHHHHHHHHTTHH
T ss_pred CCCCCCCCcCCHHHHHHHHCcCC
Confidence 38889999999999999998553
No 424
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=78.13 E-value=1.8 Score=45.98 Aligned_cols=110 Identities=20% Similarity=0.157 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc-c
Q 010913 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG-E 374 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~-~ 374 (497)
.+..+|-+|-|.|.+..++... +...++||++.+.|+..|++.+.... ..+..+.-.|..+.- .
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q--------------~~r~~V~i~dGl~~~~~ 360 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ--------------SDRNKVHIADGLDFLQR 360 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh--------------hhhhhhhHhhchHHHHH
Confidence 4578899999999998888766 65699999999999999998763211 112222222222211 0
Q ss_pred ccC--CCCCceeEEEeccc---ccccc--Chh-hHHHHHHHHhccccCCcEEec
Q 010913 375 SMQ--IQPHSVDVLVSEWM---GYCLL--YES-MLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 375 ~l~--~~~~~fDvIvs~~~---~~~l~--~~~-~l~~vL~~~~r~LkpgG~li~ 420 (497)
... -....||+++-..- .+.+. ... --..+|..+...|.|.|.+++
T Consensus 361 ~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 361 TAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred HhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence 001 13557999885321 11111 111 124677889999999999873
No 425
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.95 E-value=9.8 Score=36.67 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++..++...+.+...+ .++.++.+|+.+.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~D~~~~ 70 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG---------------GKVVPVCCDVSQH 70 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---------------CeEEEEEccCCCH
Confidence 468899999998875 4556677788 89999998876655544444332 3577778877554
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+++|++|.+.
T Consensus 71 ~~~~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 71 QQVTSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 210 000124689998764
No 426
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=77.79 E-value=11 Score=38.23 Aligned_cols=97 Identities=25% Similarity=0.314 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-hh
Q 010913 295 LMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-EE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-~~ 371 (497)
..+|.+||-.|+| .|..+..+|++ |+..|++++.++.-.+.+++ .|.. ..+.....++ ..
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~-------------~~v~~~~~~~~~~ 221 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGAT-------------YVVNPFKEDVVKE 221 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc-------------EEEcccccCHHHH
Confidence 3567888887765 25556666666 77559999888765554443 2320 0111111111 11
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.. ......+|+|+... + . ...+....+.|+++|.++
T Consensus 222 l~~--~~~~~~~d~vld~~-g----~----~~~~~~~~~~l~~~g~~v 258 (340)
T TIGR00692 222 VAD--LTDGEGVDVFLEMS-G----A----PKALEQGLQAVTPGGRVS 258 (340)
T ss_pred HHH--hcCCCCCCEEEECC-C----C----HHHHHHHHHhhcCCCEEE
Confidence 110 02345699998531 1 1 234566678899999987
No 427
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.72 E-value=2 Score=43.28 Aligned_cols=101 Identities=17% Similarity=0.329 Sum_probs=69.0
Q ss_pred CCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehh--hhhHhhc----------ccccccccCCccCCHHHHHHH
Q 010913 53 DAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLI--NYIRSQV----------AENRCWICGLTCQSNQDLQNH 120 (497)
Q Consensus 53 ~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKli--NyiR~~~----------~~~~c~~C~~~~~~~~~~~~H 120 (497)
+.+..++-++-.|.|.+|+|-|-.+.-...-+|.--+.|. |-+|... ....|.+|+..|++-+.|..|
T Consensus 160 ~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~H 239 (493)
T COG5236 160 HRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRH 239 (493)
T ss_pred hhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccceecChHHHHHH
Confidence 4566678999999999999988887766777777777664 3344321 223499999999999999999
Q ss_pred HHHh---ccCcccCCCCCCCCccccc------ccCcccccccc
Q 010913 121 LHEA---YNLKETKLRWDKEKYLKPF------MQDDKLLYSFG 154 (497)
Q Consensus 121 m~~~---~~~~~~~~~w~~d~yl~Pv------~e~D~lL~~~d 154 (497)
|+.+ .|.=+ ...--..+|++-. +++|...|.+.
T Consensus 240 cR~~HE~ChICD-~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~q 281 (493)
T COG5236 240 CRLRHEACHICD-MVGPIRYQYFKSYEDLEAHFRNAHYCCTFQ 281 (493)
T ss_pred HHhhhhhhhhhh-ccCccchhhhhCHHHHHHHhhcCceEEEEE
Confidence 9976 23222 1223355665543 56666665554
No 428
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=77.71 E-value=15 Score=37.04 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=55.7
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
.+|+-+|+|. |.++..|+++|. .|+.++.+...++..+ +.+|+.-. . .+....+......
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~---~~~Gl~i~-------~--~g~~~~~~~~~~~----- 64 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQ---QAGGLTLV-------E--QGQASLYAIPAET----- 64 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHh---hcCCeEEe-------e--CCcceeeccCCCC-----
Confidence 4689999996 457888888887 8999999864333222 22343100 0 0011111110100
Q ss_pred CCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 377 ~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+-+.+.+|+|+... .......++..+..++.|+..++
T Consensus 65 ~~~~~~~D~viv~v------K~~~~~~al~~l~~~l~~~t~vv 101 (305)
T PRK05708 65 ADAAEPIHRLLLAC------KAYDAEPAVASLAHRLAPGAELL 101 (305)
T ss_pred cccccccCEEEEEC------CHHhHHHHHHHHHhhCCCCCEEE
Confidence 11234789988432 22345678888889999998876
No 429
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.68 E-value=11 Score=36.83 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++.-++.+.+.+.... ..++.++.+|+.+.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES--------------NVDVSYIVADLTKR 70 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc--------------CCceEEEEecCCCH
Confidence 467899999998886 4566777788 89999998776655554443221 13677888887654
Q ss_pred ccccC-----CCCCceeEEEecc
Q 010913 373 GESMQ-----IQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~-----~~~~~fDvIvs~~ 390 (497)
..... ..-+.+|++|.+.
T Consensus 71 ~~i~~~~~~~~~~g~iD~lv~na 93 (263)
T PRK08339 71 EDLERTVKELKNIGEPDIFFFST 93 (263)
T ss_pred HHHHHHHHHHHhhCCCcEEEECC
Confidence 31000 0124689888653
No 430
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=77.66 E-value=1.3 Score=41.97 Aligned_cols=23 Identities=35% Similarity=1.035 Sum_probs=21.0
Q ss_pred CCcceecCCCCCCCHHHHHHHhh
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCR 67 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~ 67 (497)
...-|+||...|++.++++.||-
T Consensus 238 eh~YC~fCG~~y~~~edl~ehCP 260 (268)
T KOG1994|consen 238 EHYYCFFCGIKYKDEEDLYEHCP 260 (268)
T ss_pred cceEEEEeccccCCHHHHHHhCC
Confidence 46789999999999999999994
No 431
>PHA00733 hypothetical protein
Probab=77.39 E-value=4.5 Score=35.49 Aligned_cols=51 Identities=22% Similarity=0.467 Sum_probs=35.7
Q ss_pred CcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehhhhhHhhcccccccccCCccCCHHHHHHHHHHhc
Q 010913 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEAY 125 (497)
Q Consensus 46 ~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKliNyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~~~ 125 (497)
+..|--|++.|++...+..|+.. | .....|..|++.|.....|..|+.++.
T Consensus 73 Py~C~~Cgk~Fss~s~L~~H~r~-h----------------------------~~~~~C~~CgK~F~~~~sL~~H~~~~h 123 (128)
T PHA00733 73 PYVCPLCLMPFSSSVSLKQHIRY-T----------------------------EHSKVCPVCGKEFRNTDSTLDHVCKKH 123 (128)
T ss_pred CccCCCCCCcCCCHHHHHHHHhc-C----------------------------CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence 45666666666666666666552 1 112369999999999999999998873
No 432
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.19 E-value=11 Score=36.10 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|++++.++.-+..+.+.+...+ .++.++.+|+.+.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 68 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG---------------GEALFVACDVTRD 68 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CceEEEEcCCCCH
Confidence 457899999987765 3445666687 89999999876655555444332 3678888888654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+++|+||.+.
T Consensus 69 ~~i~~~~~~~~~~~g~id~li~~a 92 (253)
T PRK06172 69 AEVKALVEQTIAAYGRLDYAFNNA 92 (253)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 210 000124679999764
No 433
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=77.12 E-value=1.5 Score=44.89 Aligned_cols=32 Identities=31% Similarity=0.629 Sum_probs=28.4
Q ss_pred CCcceecCC---CCCCCHHHHHHHhhhhcCcchhh
Q 010913 45 SGFLCLFCD---AGYSSCDTLFEHCRLSHCFDFHS 76 (497)
Q Consensus 45 ~~~~CLFC~---~~~~s~~~~l~Hm~~~H~Fd~~~ 76 (497)
....||||+ +.|+|++.+-+||..+-+.-+..
T Consensus 216 ~~~~CL~CN~~~~~f~sleavr~HM~~K~HCkl~y 250 (390)
T KOG2785|consen 216 IGFICLFCNELGRPFSSLEAVRAHMRDKGHCKLPY 250 (390)
T ss_pred cCceEEEeccccCcccccHHHHHHHhhccCcccCC
Confidence 457899999 99999999999999998887766
No 434
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=77.02 E-value=11 Score=37.03 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=46.7
Q ss_pred hHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccCCCCCceeEEEec
Q 010913 311 LSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSE 389 (497)
Q Consensus 311 ls~~la~~G-~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~~~~~~fDvIvs~ 389 (497)
+++.+.++| ..+|+|+|.++..+..|.+. |+ +.-...+.+.+ ..+|+||..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~----------------~~~~~~~~~~~--------~~~Dlvvla 52 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL----GI----------------IDEASTDIEAV--------EDADLVVLA 52 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TS----------------SSEEESHHHHG--------GCCSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CC----------------eeeccCCHhHh--------cCCCEEEEc
Confidence 356677777 35999999999887666533 43 22222222222 246998843
Q ss_pred cccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 390 WMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 390 ~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+......++.++...+++|+++.
T Consensus 53 ------vP~~~~~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 53 ------VPVSAIEDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp ------S-HHHHHHHHHHHHCGS-TTSEEE
T ss_pred ------CCHHHHHHHHHHhhhhcCCCcEEE
Confidence 244567889999999999987776
No 435
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=76.93 E-value=21 Score=35.94 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCC-CHhHHH-HHHcCCCEEEEEeCCHHHHH
Q 010913 296 MKGAVVMDIGCGT-GILSLF-AAQAGASRVIAVEASEKMAA 334 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~-la~~G~~~V~gvD~S~~~i~ 334 (497)
..+++|+-+|+|. |..... +...|+ +|+++|.++....
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~ 189 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLA 189 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 4689999999986 333333 333487 9999999976443
No 436
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=76.83 E-value=0.53 Score=29.21 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.2
Q ss_pred cccccCCccCCHHHHHHHHHHh
Q 010913 103 RCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
.|..|+..|.+..++..||+.+
T Consensus 3 ~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 3 YCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp BBTTTTBBBSSHHHHHCCTTSH
T ss_pred CcccCCCCcCCHHHHHHHHccC
Confidence 4999999999999999988754
No 437
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=76.72 E-value=4.4 Score=41.00 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=70.0
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC-CCCceEEEecchhhcccc
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNIN-NAGKMEVVQGMVEELGES 375 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~-~~~~i~~i~gd~~~l~~~ 375 (497)
++|--||+|+ | .++..+|..|. .|+..|+++.+++.++..+..+ +.....+-..... ....+..+.... ++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~-l~k~~~~g~l~~~~~~~~l~~i~~~~-~~--- 77 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKN-LEKLVEKGKLTEEEADAALARITPTT-DL--- 77 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHH-HHHHHhcCCCChhhHHHHHhhccccC-ch---
Confidence 5788899997 2 34555555667 8999999999998887766543 1000000000000 000011111000 00
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeeec
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG 431 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~~ 431 (497)
..-...|+|+=. +.....--..++..+..+++|+.+|.-++.++....+.
T Consensus 78 --~~l~~~DlVIEA----v~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia 127 (307)
T COG1250 78 --AALKDADLVIEA----VVEDLELKKQVFAELEALAKPDAILASNTSSLSITELA 127 (307)
T ss_pred --hHhccCCEEEEe----ccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHH
Confidence 012457888732 33445556789999999999999999888877555443
No 438
>PLN02256 arogenate dehydrogenase
Probab=76.60 E-value=17 Score=36.76 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCH
Q 010913 296 MKGAVVMDIGCGT--GILSLFAAQAGASRVIAVEASE 330 (497)
Q Consensus 296 ~~~~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~ 330 (497)
.++.+|.=||+|. |.++..+.+.|. +|+++|.++
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~ 69 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD 69 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc
Confidence 4567899999875 335555555575 899999986
No 439
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=76.47 E-value=11 Score=43.09 Aligned_cols=117 Identities=9% Similarity=0.044 Sum_probs=72.3
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCC----CCCCCCceEEEecchhhc
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEG----NINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~----~~~~~~~i~~i~gd~~~l 372 (497)
++|--||+|+ +.++..++.+|. .|+.+|.++..++.+.+++..+-- ........ ......+|++. .+...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~-~~~~~g~~~~~~~~~~~~~i~~~-~~~~~- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLN-KKVKRKKITSLERDSILSNLTPT-LDYSG- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHhCeEEe-CCHHH-
Confidence 5799999997 345666777788 899999999999888776643210 00000000 00000233322 12222
Q ss_pred ccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeee
Q 010913 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF 430 (497)
Q Consensus 373 ~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~ 430 (497)
-...|+|+=. +.....--..++.++.++++|+.+|.-++.++....+
T Consensus 412 -------~~~aDlViEA----v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~l 458 (737)
T TIGR02441 412 -------FKNADMVIEA----VFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDI 458 (737)
T ss_pred -------hccCCeehhh----ccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 2457888722 3344455678999999999999999988877655444
No 440
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=76.33 E-value=15 Score=37.89 Aligned_cols=46 Identities=28% Similarity=0.466 Sum_probs=33.1
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-.|+|. |.++..+|++ |+.+|++++.++.-.+.+++
T Consensus 172 ~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~ 219 (375)
T cd08282 172 AGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAES 219 (375)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4556788888888863 5566667766 87689999998866655543
No 441
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.03 E-value=13 Score=35.77 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|++++.+...++...+.+...+ .++.++..|+.+.
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 69 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG---------------GKAEALACHIGEM 69 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CeEEEEEcCCCCH
Confidence 457899999999886 4556667788 89999998766655444443332 2566777777544
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+++|+++...
T Consensus 70 ~~~~~~~~~~~~~~~~id~li~~a 93 (252)
T PRK07035 70 EQIDALFAHIRERHGRLDILVNNA 93 (252)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 210 000124589988654
No 442
>PRK05876 short chain dehydrogenase; Provisional
Probab=75.91 E-value=12 Score=36.83 Aligned_cols=79 Identities=22% Similarity=0.128 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
+.+++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+ .++.++..|+.+.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~---------------~~~~~~~~Dv~d~ 67 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG---------------FDVHGVMCDVRHR 67 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CeEEEEeCCCCCH
Confidence 467899999988775 4555666788 89999988766654444444333 2577888887654
Q ss_pred ccccC------CCCCceeEEEecc
Q 010913 373 GESMQ------IQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~------~~~~~fDvIvs~~ 390 (497)
..-.. -..+.+|++|.+.
T Consensus 68 ~~v~~~~~~~~~~~g~id~li~nA 91 (275)
T PRK05876 68 EEVTHLADEAFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 31000 0124689988764
No 443
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=75.88 E-value=1.4 Score=38.82 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=27.5
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCC
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLD 84 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld 84 (497)
..++||-|.+.|.+. -.|.++.||.+-..-+.++||-
T Consensus 71 d~i~clecGk~~k~L---krHL~~~~gltp~eYR~kwGlp 107 (132)
T PF05443_consen 71 DYIICLECGKKFKTL---KRHLRTHHGLTPEEYRAKWGLP 107 (132)
T ss_dssp S-EE-TBT--EESBH---HHHHHHTT-S-HHHHHHHTT-G
T ss_pred CeeEEccCCcccchH---HHHHHHccCCCHHHHHHHhCcC
Confidence 469999999999997 7899999999999999999974
No 444
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=75.53 E-value=1.4 Score=44.52 Aligned_cols=80 Identities=21% Similarity=0.425 Sum_probs=56.5
Q ss_pred CCcceecCCCCCCCHHHHHHHhhhhcCcchhhhhhhhcCCccCceehh-hhhHhhcccccccccCCccCCHHHHHHHHHH
Q 010913 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLI-NYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (497)
Q Consensus 45 ~~~~CLFC~~~~~s~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~iKli-NyiR~~~~~~~c~~C~~~~~~~~~~~~Hm~~ 123 (497)
-.+-|.||...|.+-+.++.|++.+-..|-....=.+-.-+++.-||+ --+++.+.-.+|..|..+.++...|..||.-
T Consensus 206 KvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~ 285 (467)
T KOG3608|consen 206 KVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRY 285 (467)
T ss_pred eEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChHHHHHHHHh
Confidence 457899999999999999999998766544332111111233344544 3466667667799999999999999999985
Q ss_pred h
Q 010913 124 A 124 (497)
Q Consensus 124 ~ 124 (497)
+
T Consensus 286 r 286 (467)
T KOG3608|consen 286 R 286 (467)
T ss_pred h
Confidence 4
No 445
>PRK08324 short chain dehydrogenase; Validated
Probab=75.48 E-value=12 Score=42.35 Aligned_cols=78 Identities=23% Similarity=0.222 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+|++||-.|++.|+ ++..+++.|+ +|+++|.++..+..+.+.+... .++.++.+|+.+.
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~----------------~~v~~v~~Dvtd~ 482 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP----------------DRALGVACDVTDE 482 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc----------------CcEEEEEecCCCH
Confidence 467899999976654 3444555688 8999999987655444333211 2577788877553
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... ..-..+.+|+||.+.
T Consensus 483 ~~v~~~~~~~~~~~g~iDvvI~~A 506 (681)
T PRK08324 483 AAVQAAFEEAALAFGGVDIVVSNA 506 (681)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 210 000124689998753
No 446
>PRK07890 short chain dehydrogenase; Provisional
Probab=75.31 E-value=15 Score=35.30 Aligned_cols=79 Identities=25% Similarity=0.291 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|++++.++.-.+.+...+...+ .++.++..|+.+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 66 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG---------------RRALAVPTDITDE 66 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC---------------CceEEEecCCCCH
Confidence 457899999987775 4555666788 89999998876655544443333 3577888887543
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-.-+.+|+|+.+.
T Consensus 67 ~~~~~~~~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 67 DQCANLVALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHHHHHHHHcCCccEEEECC
Confidence 210 000124689988754
No 447
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=75.24 E-value=14 Score=35.54 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|+.++.++..+....+.++..+ .++.++.+|+.+.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~~~ 72 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG---------------GAAEALAFDIADE 72 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC---------------CceEEEEccCCCH
Confidence 468899999977665 3444556688 89999999766554444444433 3577888887653
Q ss_pred cc------ccCCCCCceeEEEecc
Q 010913 373 GE------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~------~l~~~~~~fDvIvs~~ 390 (497)
.. .+.-.-+++|+|+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~id~vi~~a 96 (256)
T PRK06124 73 EAVAAAFARIDAEHGRLDILVNNV 96 (256)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 21 0000124678888653
No 448
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.11 E-value=14 Score=35.59 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|+.++.++..++...+.+...+. ..++.++.+|+.+.
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~ 70 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVA-------------GARVLAVPADVTDA 70 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccC-------------CceEEEEEccCCCH
Confidence 357899999988775 4555666788 899999988766655555443111 13678888887654
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
.....+ ..+.+|++|.+.
T Consensus 71 ~~~~~~~~~~~~~~g~id~li~~a 94 (260)
T PRK07063 71 ASVAAAVAAAEEAFGPLDVLVNNA 94 (260)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECC
Confidence 210000 124689988753
No 449
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=74.92 E-value=13 Score=33.11 Aligned_cols=77 Identities=22% Similarity=0.231 Sum_probs=51.4
Q ss_pred CEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCC--HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 299 AVVMDIGCGTGI---LSLFAAQAGASRVIAVEAS--EKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 299 ~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S--~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
++||-+|+++|+ ++..+++.|+.+|+.+..+ ....+.....++..+ .++.++..|+.+..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---------------~~~~~~~~D~~~~~ 65 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---------------AKITFIECDLSDPE 65 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---------------SEEEEEESETTSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---------------cccccccccccccc
Confidence 478889988875 4666777778799999998 444544444455444 48899998876543
Q ss_pred c------ccCCCCCceeEEEecc
Q 010913 374 E------SMQIQPHSVDVLVSEW 390 (497)
Q Consensus 374 ~------~l~~~~~~fDvIvs~~ 390 (497)
. .+....+.+|++|.+.
T Consensus 66 ~~~~~~~~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 66 SIRALIEEVIKRFGPLDILINNA 88 (167)
T ss_dssp HHHHHHHHHHHHHSSESEEEEEC
T ss_pred ccccccccccccccccccccccc
Confidence 1 1111246799999764
No 450
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.88 E-value=19 Score=36.08 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=29.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCCCHh---HHHHHHcCCCEEEEEeCCH
Q 010913 285 YRQAILENPSLMKGAVVMDIGCGTGIL---SLFAAQAGASRVIAVEASE 330 (497)
Q Consensus 285 y~~~i~~~~~~~~~~~VLDvGCGtG~l---s~~la~~G~~~V~gvD~S~ 330 (497)
+...+.......++++||-+|+| |.- ...+++.|+++|+.++.+.
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 33344332223567899999997 542 3335566987899999985
No 451
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.84 E-value=17 Score=35.81 Aligned_cols=94 Identities=27% Similarity=0.364 Sum_probs=57.1
Q ss_pred CCCCCCCEEEEEcCC--CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 293 PSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCG--tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
....+|.+||-.|++ .|..+..+|++ |+ +|+++..++...+.++ ..|. +.+-....+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~----~~g~--------------~~~~~~~~~~ 198 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLK----ELGA--------------DEVVIDDGAI 198 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----hcCC--------------cEEEecCccH
Confidence 345678999999873 46677777777 77 7999998886655443 2332 1111111111
Q ss_pred -hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 -EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 -~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+. .. ...+|+|+... + ...+....+.|+++|.++
T Consensus 199 ~~~i~---~~-~~~~d~vl~~~-~---------~~~~~~~~~~l~~~g~~v 235 (320)
T cd08243 199 AEQLR---AA-PGGFDKVLELV-G---------TATLKDSLRHLRPGGIVC 235 (320)
T ss_pred HHHHH---Hh-CCCceEEEECC-C---------hHHHHHHHHHhccCCEEE
Confidence 1121 12 45799998532 1 124556678899999987
No 452
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=74.83 E-value=18 Score=36.34 Aligned_cols=96 Identities=26% Similarity=0.302 Sum_probs=54.1
Q ss_pred CCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc-hhh
Q 010913 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM-VEE 371 (497)
Q Consensus 295 ~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd-~~~ 371 (497)
+.++.+||-.|+|. |.+...+|+. |..+|+++..++...+.++ ..|. +.+--.... ...
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~--------------~~~~~~~~~~~~~ 226 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE----RLGA--------------DHVLNASDDVVEE 226 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH----HhCC--------------cEEEcCCccHHHH
Confidence 46788999999664 4445556665 7348999998887655443 2332 111100111 111
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.. ..+...+|+|+... + . ...+....+.|+++|.++
T Consensus 227 i~~--~~~~~~~dvvld~~-g----~----~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 227 VRE--LTGGRGADAVIDFV-G----S----DETLALAAKLLAKGGRYV 263 (340)
T ss_pred HHH--HhCCCCCCEEEEcC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 110 01234699998532 1 1 234566678899999987
No 453
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=74.78 E-value=17 Score=36.81 Aligned_cols=97 Identities=23% Similarity=0.282 Sum_probs=56.5
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEe-c
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQ-G 367 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~-g 367 (497)
...+.++.+||-.|+|. |.++..+|++ |. +|+++..++...+.+++ .|. +.+ .... .
T Consensus 160 ~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~----~g~--------------~~~i~~~~~~ 220 (345)
T cd08260 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARE----LGA--------------VATVNASEVE 220 (345)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHH----hCC--------------CEEEccccch
Confidence 34456788999999753 4556666666 77 89999999877665532 232 111 1111 1
Q ss_pred ch-hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 368 MV-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 368 d~-~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+. ..+. .+..+.+|+|+... + . ...+....+.|+++|.++
T Consensus 221 ~~~~~~~---~~~~~~~d~vi~~~-g----~----~~~~~~~~~~l~~~g~~i 261 (345)
T cd08260 221 DVAAAVR---DLTGGGAHVSVDAL-G----I----PETCRNSVASLRKRGRHV 261 (345)
T ss_pred hHHHHHH---HHhCCCCCEEEEcC-C----C----HHHHHHHHHHhhcCCEEE
Confidence 11 1111 11122799998542 1 1 224556678899999987
No 454
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.73 E-value=22 Score=35.58 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=61.4
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-------hCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAK-------DNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~-------~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|-=||+|+ | .++..++++|. .|+++|.++..++.+++.+. ..|.... .... ..-.++.+ ..+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~-~~~~~~~~-~~~~ 78 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQ---EEAD-ATLGRIRC-TTNL 78 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH---HHHH-HHHhceEe-eCCH
Confidence 5688899986 3 35566667787 99999999988876655432 1221000 0000 00001211 1222
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCcee
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~ 425 (497)
+. -...|+|+... .........++.++...++|+.+|+.++.++
T Consensus 79 ~~--------~~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 79 EE--------LRDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred HH--------hCCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 22 23478888432 2223445677888888899988877555554
No 455
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=74.56 E-value=17 Score=36.71 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=53.3
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch-h
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-E 370 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~-~ 370 (497)
...++.+||-.|+|. |..+..+|+. |+.+|++++.++.-...+.+ .|. ..+.....+. .
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~--------------~~~~~~~~~~~~ 225 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA--------------EPINFEDAEPVE 225 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC--------------eEEecCCcCHHH
Confidence 456788888887652 3445556665 76589999887755544443 231 0011101111 1
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+.. ..+...+|+|+... + . ...+....+.|+++|.++
T Consensus 226 ~l~~--~~~~~~~dvvid~~-~----~----~~~~~~~~~~l~~~g~~v 263 (344)
T cd08284 226 RVRE--ATEGRGADVVLEAV-G----G----AAALDLAFDLVRPGGVIS 263 (344)
T ss_pred HHHH--HhCCCCCCEEEECC-C----C----HHHHHHHHHhcccCCEEE
Confidence 1110 02345699998532 1 1 234566678899999987
No 456
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=74.37 E-value=12 Score=37.10 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhC
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN 343 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~ 343 (497)
.+.+.|.. ...++.+|||.-+|+|.....+.+.|- +.+|+|+++..+..+.+++...
T Consensus 211 l~~r~i~~--~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 211 LIERLIRD--YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHh--cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 34444444 457899999999999999998888877 8999999999999999988654
No 457
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=74.32 E-value=19 Score=40.87 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=70.8
Q ss_pred CEEEEEcCCC-C-HhHHHHH-HcCCCEEEEEeCCHHHHHHHHHHHHhC-------CCCCCCCCCCCCCCCCCceEEEecc
Q 010913 299 AVVMDIGCGT-G-ILSLFAA-QAGASRVIAVEASEKMAAVATQIAKDN-------DFWWDRPQSEGNINNAGKMEVVQGM 368 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la-~~G~~~V~gvD~S~~~i~~A~~~~~~~-------gl~~~~~~~~~~~~~~~~i~~i~gd 368 (497)
++|.-||+|+ | .++..++ .+|. .|+.+|.++..++.++.++... |... .. .......+|++. .+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~i~~~-~~ 383 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLK---PS-ERDKQMALISGT-TD 383 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---HH-HHHHHHhcEEEe-CC
Confidence 6799999998 3 3555566 6688 9999999999988877655431 1100 00 000001234333 12
Q ss_pred hhhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEEeee
Q 010913 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGF 430 (497)
Q Consensus 369 ~~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~~~~ 430 (497)
... -...|+|+=. +.....--..++.++.++++|+.+|.-++.++....+
T Consensus 384 ~~~--------~~~aDlViEa----v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~l 433 (708)
T PRK11154 384 YRG--------FKHADVVIEA----VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQI 433 (708)
T ss_pred hHH--------hccCCEEeec----ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 221 2458888832 3344455678999999999999999877776654443
No 458
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=74.25 E-value=13 Score=37.71 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=56.9
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEec--chhhccc
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG--MVEELGE 374 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~g--d~~~l~~ 374 (497)
.+|+-+|+|. |.++..|+++| ..|+.+--++. ++ .++..|+ .+.-..+ .......
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~----~l~~~GL---------------~i~~~~~~~~~~~~~~ 59 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LE----ALKKKGL---------------RIEDEGGNFTTPVVAA 59 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HH----HHHhCCe---------------EEecCCCccccccccc
Confidence 3688999996 56788899999 57887777664 33 2334465 1211111 0000000
Q ss_pred ccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 375 ~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.....+|+|+... ...++..++..+...++|...++
T Consensus 60 ~~~~~~~~~Dlviv~v------Ka~q~~~al~~l~~~~~~~t~vl 98 (307)
T COG1893 60 TDAEALGPADLVIVTV------KAYQLEEALPSLAPLLGPNTVVL 98 (307)
T ss_pred cChhhcCCCCEEEEEe------ccccHHHHHHHhhhcCCCCcEEE
Confidence 0012234799998532 22366889999999999998776
No 459
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=73.81 E-value=15 Score=36.79 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=54.4
Q ss_pred CEEEEEcCCC--CHhHHHHHHcCCC-EEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccc
Q 010913 299 AVVMDIGCGT--GILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (497)
Q Consensus 299 ~~VLDvGCGt--G~ls~~la~~G~~-~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~ 375 (497)
.+|+-+|.|- |.++..+.+.|.. .|+|.|.+....+.|.+. |+ +.-...+...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv----------------~d~~~~~~~~---- 59 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GV----------------IDELTVAGLA---- 59 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cc----------------ccccccchhh----
Confidence 5788888885 4566677777763 589999998766554432 22 1101111101
Q ss_pred cCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 376 l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
......|+||-.. +......++.++...|+||.++.
T Consensus 60 --~~~~~aD~Vivav------Pi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 60 --EAAAEADLVIVAV------PIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred --hhcccCCEEEEec------cHHHHHHHHHHhcccCCCCCEEE
Confidence 1234579887432 33456778888888999987765
No 460
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=73.71 E-value=9.9 Score=38.44 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=56.2
Q ss_pred HHHHHhCCCCCCCCE--EEEEcCCCCHhHHHH-HHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 010913 286 RQAILENPSLMKGAV--VMDIGCGTGILSLFA-AQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (497)
Q Consensus 286 ~~~i~~~~~~~~~~~--VLDvGCGtG~ls~~l-a~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~ 361 (497)
...++..-+..++.. =+|||.|+-.+--.+ ++. +. ..+|+|+.+.....|..++..|++. ..
T Consensus 89 I~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~ls-------------s~ 154 (419)
T KOG2912|consen 89 IEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLS-------------SL 154 (419)
T ss_pred HHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccc-------------cc
Confidence 333444333334433 379988775442222 222 43 7899999999999999999999884 56
Q ss_pred eEEEecchhhcc--cccC-CCCCceeEEEeccccc
Q 010913 362 MEVVQGMVEELG--ESMQ-IQPHSVDVLVSEWMGY 393 (497)
Q Consensus 362 i~~i~gd~~~l~--~~l~-~~~~~fDvIvs~~~~~ 393 (497)
+.+++....... +.+. .+...||.+.|++.++
T Consensus 155 ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 155 IKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred eeeEEecchhhcchhhhccCccceeeEEecCCchh
Confidence 776665331110 0001 1244699999987543
No 461
>PRK07677 short chain dehydrogenase; Provisional
Probab=73.54 E-value=15 Score=35.35 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccc
Q 010913 298 GAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (497)
Q Consensus 298 ~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~ 374 (497)
++++|-.|++.|+ ++..+++.|+ +|++++.++..++.+.+.+...+ .++.++.+|+.+...
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~~~ 64 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP---------------GQVLTVQMDVRNPED 64 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcEEEEEecCCCHHH
Confidence 4689999988775 4555666788 89999998766555544443322 367888888754321
Q ss_pred c------cCCCCCceeEEEecc
Q 010913 375 S------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 375 ~------l~~~~~~fDvIvs~~ 390 (497)
- +.-.-+.+|+||.+.
T Consensus 65 ~~~~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 65 VQKMVEQIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHHHHHHHhCCccEEEECC
Confidence 0 000124689988754
No 462
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=73.51 E-value=2.2 Score=26.16 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=18.3
Q ss_pred cccccCCccCCHHHHHHHHH
Q 010913 103 RCWICGLTCQSNQDLQNHLH 122 (497)
Q Consensus 103 ~c~~C~~~~~~~~~~~~Hm~ 122 (497)
.|-.|++.|.+..++..||+
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKR 22 (27)
T ss_dssp EETTTTEEESSHHHHHHHHC
T ss_pred CCCccCCccCChhHHHHHhH
Confidence 48999999999999999985
No 463
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=73.51 E-value=8.9 Score=39.52 Aligned_cols=46 Identities=28% Similarity=0.480 Sum_probs=35.0
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~ 338 (497)
..+.+|.+||-+|+|. |.++..+|++ |+.+|++++.++.-.+.+++
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 4567889999999764 5566667776 88689999999987766643
No 464
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=73.41 E-value=9.9 Score=38.53 Aligned_cols=93 Identities=26% Similarity=0.348 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc---hh
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM---VE 370 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd---~~ 370 (497)
.+|.+||-.|+|. |.++..++++ |..+|++++-++.-...+++ .|.. ..+.....+ +.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~-------------~~~~~~~~~~~~~~ 224 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGAD-------------VVINPREEDVVEVK 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcc-------------eeeCcccccHHHHH
Confidence 5678888888754 5566667776 76578898777755544443 2320 011111111 12
Q ss_pred hcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 371 ~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
.+ .+.+.+|+|+... + . ...+..+.+.|+++|.++
T Consensus 225 ~~-----~~~~~vd~vld~~-g----~----~~~~~~~~~~l~~~G~~v 259 (341)
T cd05281 225 SV-----TDGTGVDVVLEMS-G----N----PKAIEQGLKALTPGGRVS 259 (341)
T ss_pred HH-----cCCCCCCEEEECC-C----C----HHHHHHHHHHhccCCEEE
Confidence 22 2345799999532 1 1 224455667899999987
No 465
>PRK07478 short chain dehydrogenase; Provisional
Probab=73.26 E-value=17 Score=34.95 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++.-++.+.+.++..+ .++.++.+|+.+.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 67 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG---------------GEAVALAGDVRDE 67 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcEEEEEcCCCCH
Confidence 357899999988775 4556667788 89999998876665555544433 3577788887654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+.+|++|.+.
T Consensus 68 ~~~~~~~~~~~~~~~~id~li~~a 91 (254)
T PRK07478 68 AYAKALVALAVERFGGLDIAFNNA 91 (254)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 210 000124689988764
No 466
>PRK08862 short chain dehydrogenase; Provisional
Probab=73.24 E-value=15 Score=35.17 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+...+ ..+..+..|+.+.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~---------------~~~~~~~~D~~~~ 66 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT---------------DNVYSFQLKDFSQ 66 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---------------CCeEEEEccCCCH
Confidence 357899999999987 5667777898 89999998887766655554443 2455555555443
Q ss_pred ccc------cCCCCC-ceeEEEecc
Q 010913 373 GES------MQIQPH-SVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~-~fDvIvs~~ 390 (497)
... +.-.-+ .+|+++.+.
T Consensus 67 ~~~~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 67 ESIRHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECC
Confidence 210 000113 789998875
No 467
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.16 E-value=9.1 Score=38.29 Aligned_cols=81 Identities=25% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..|++||--||.+|+ ++..++++|+ +++-+-...+-++...+.+++.+- ..++.++++|+.+.
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~-------------~~~v~~~~~Dvs~~ 75 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGS-------------LEKVLVLQLDVSDE 75 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCC-------------cCccEEEeCccCCH
Confidence 468999999999997 6788888999 566666666666666444444442 12589999999877
Q ss_pred cccc------CCCCCceeEEEecc
Q 010913 373 GESM------QIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l------~~~~~~fDvIvs~~ 390 (497)
.+-. ...-+.+|+.|.+.
T Consensus 76 ~~~~~~~~~~~~~fg~vDvLVNNA 99 (282)
T KOG1205|consen 76 ESVKKFVEWAIRHFGRVDVLVNNA 99 (282)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecC
Confidence 5311 12357899999874
No 468
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=73.14 E-value=15 Score=37.08 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=56.1
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc-h
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM-V 369 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd-~ 369 (497)
..+.+|.+||-.|||. |.+...+|++ |+..|++++.++.-.+.+++ .|.. ..+.....+ .
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~-------------~v~~~~~~~~~ 226 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT-------------DIVAERGEEAV 226 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-------------eEecCCcccHH
Confidence 3456777887788764 5566667777 88679999988754444432 3320 011111101 1
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
..+.. + .+...+|+|+... + . ...+....+.|+++|.++
T Consensus 227 ~~i~~-~-~~~~~~d~il~~~-g----~----~~~~~~~~~~l~~~g~~v 265 (345)
T cd08287 227 ARVRE-L-TGGVGADAVLECV-G----T----QESMEQAIAIARPGGRVG 265 (345)
T ss_pred HHHHH-h-cCCCCCCEEEECC-C----C----HHHHHHHHHhhccCCEEE
Confidence 11110 0 1334689998431 1 1 235667788899999987
No 469
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=73.05 E-value=26 Score=32.06 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=66.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceE
Q 010913 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (497)
Q Consensus 284 ~y~~~i~~~~~~~~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~ 363 (497)
.+.+.+.... ..+.+|+-|||=+-...+.-......+++-.|.+.+..... +. .
T Consensus 14 ~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-----------------------~~-~ 67 (162)
T PF10237_consen 14 FLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-----------------------GD-E 67 (162)
T ss_pred HHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-----------------------Cc-c
Confidence 4455555533 35689999999885555444122345899999987543211 12 2
Q ss_pred EEecchhhcccccC-CCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCc
Q 010913 364 VVQGMVEELGESMQ-IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (497)
Q Consensus 364 ~i~gd~~~l~~~l~-~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~ 423 (497)
|+.-|...... ++ .-.++||+||..+.. +.++-+..+...+.-++|+++.++..+.
T Consensus 68 F~fyD~~~p~~-~~~~l~~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 68 FVFYDYNEPEE-LPEELKGKFDVVVIDPPF---LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred eEECCCCChhh-hhhhcCCCceEEEECCCC---CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 33333322210 11 115799999988743 4555666677777788899999885554
No 470
>PRK06194 hypothetical protein; Provisional
Probab=72.65 E-value=16 Score=35.90 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=48.3
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|+.+|.+...+....+.+...+ .++.++.+|+.+.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~d~ 67 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG---------------AEVLGVRTDVSDA 67 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC---------------CeEEEEECCCCCH
Confidence 356789988876654 3445566687 89999998765554444333322 3678888888654
Q ss_pred ccccCC------CCCceeEEEecc
Q 010913 373 GESMQI------QPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~~------~~~~fDvIvs~~ 390 (497)
..-..+ ..+.+|+|+.+.
T Consensus 68 ~~~~~~~~~~~~~~g~id~vi~~A 91 (287)
T PRK06194 68 AQVEALADAALERFGAVHLLFNNA 91 (287)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 210000 123579998764
No 471
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=72.59 E-value=19 Score=36.36 Aligned_cols=95 Identities=22% Similarity=0.265 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCce-EEEecch-hh
Q 010913 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM-EVVQGMV-EE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i-~~i~gd~-~~ 371 (497)
.+|.+||-.|+|. |..+..+|++ |+.+|++++.++...+.+++ .|. +.+ .....+. ..
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~--------------~~~~~~~~~~~~~~ 223 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGA--------------TRAVNVAKEDLRDV 223 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCC--------------cEEecCccccHHHH
Confidence 4678888888764 5566667776 87678999888866655443 232 111 1111111 11
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
+.. ......+|+|+... + . ...+....+.|+++|.++
T Consensus 224 ~~~--~~~~~~~d~v~d~~-g----~----~~~~~~~~~~l~~~G~~v 260 (341)
T PRK05396 224 MAE--LGMTEGFDVGLEMS-G----A----PSAFRQMLDNMNHGGRIA 260 (341)
T ss_pred HHH--hcCCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 110 02345689998532 1 1 234555677899999987
No 472
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=72.33 E-value=23 Score=32.05 Aligned_cols=85 Identities=27% Similarity=0.365 Sum_probs=51.3
Q ss_pred EEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcccccC
Q 010913 300 VVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (497)
Q Consensus 300 ~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l~ 377 (497)
+|-=||+|. | .++..|+++|. .|++.|.++..++.+.+. .++.. .+..++-
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~---------------------g~~~~-~s~~e~~---- 55 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA---------------------GAEVA-DSPAEAA---- 55 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT---------------------TEEEE-SSHHHHH----
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh---------------------hhhhh-hhhhhHh----
Confidence 456677765 2 24555666688 899999998655433322 22333 3444442
Q ss_pred CCCCceeEEEeccccccccChhhHHHHHHH--HhccccCCcEEe
Q 010913 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFA--RDQWLKPGGAIL 419 (497)
Q Consensus 378 ~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~--~~r~LkpgG~li 419 (497)
...|+|++ ++........++.. +...|++|.+++
T Consensus 56 ---~~~dvvi~-----~v~~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 56 ---EQADVVIL-----CVPDDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp ---HHBSEEEE------SSSHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred ---hcccceEe-----ecccchhhhhhhhhhHHhhccccceEEE
Confidence 34599986 44555677888888 888888887776
No 473
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=71.99 E-value=12 Score=38.61 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=38.1
Q ss_pred CCCCCCCEEEEEcCCCCHhHHHHHHc---------CCCEEEEEeCCHHHHHHHHHHHHhC
Q 010913 293 PSLMKGAVVMDIGCGTGILSLFAAQA---------GASRVIAVEASEKMAAVATQIAKDN 343 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGtG~ls~~la~~---------G~~~V~gvD~S~~~i~~A~~~~~~~ 343 (497)
...+.+-.++++|.|+|.++.-+++. .+.++.-|++|+...+.-+++++..
T Consensus 73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34455678999999999987665543 1458999999999887777666543
No 474
>PRK06128 oxidoreductase; Provisional
Probab=71.93 E-value=24 Score=35.19 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=45.5
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHH--HHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchh
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEK--MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~--~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~ 370 (497)
..+++||-.|++.|+ ++..+++.|+ +|+.+..+.. ..+...+.+...+ .++.++.+|+.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~ 116 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG---------------RKAVALPGDLK 116 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC---------------CeEEEEecCCC
Confidence 457899999987765 4555666688 7877765432 2222223333333 35777888876
Q ss_pred hcccc------cCCCCCceeEEEecc
Q 010913 371 ELGES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 371 ~l~~~------l~~~~~~fDvIvs~~ 390 (497)
+...- +.-.-+.+|++|.+.
T Consensus 117 ~~~~v~~~~~~~~~~~g~iD~lV~nA 142 (300)
T PRK06128 117 DEAFCRQLVERAVKELGGLDILVNIA 142 (300)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 54210 000124689998764
No 475
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=71.82 E-value=2 Score=41.04 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=21.3
Q ss_pred cccccccccCCccCCHHHHHHHHHHh
Q 010913 99 VAENRCWICGLTCQSNQDLQNHLHEA 124 (497)
Q Consensus 99 ~~~~~c~~C~~~~~~~~~~~~Hm~~~ 124 (497)
+....||+|+..|.+..-|.+|.+.|
T Consensus 8 ~~kpwcwycnrefddekiliqhqkak 33 (341)
T KOG2893|consen 8 VDKPWCWYCNREFDDEKILIQHQKAK 33 (341)
T ss_pred cCCceeeecccccchhhhhhhhhhhc
Confidence 33445999999999988888998876
No 476
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=71.56 E-value=30 Score=34.56 Aligned_cols=91 Identities=21% Similarity=0.198 Sum_probs=54.0
Q ss_pred CCCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 292 ~~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
...+.++.+||-.|||. |..+..++++ |+ +|++++.++...+.+++ .|. + .++...
T Consensus 162 ~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~----~g~--------------~--~~~~~~- 219 (329)
T cd08298 162 LAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARE----LGA--------------D--WAGDSD- 219 (329)
T ss_pred hhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHH----hCC--------------c--EEeccC-
Confidence 34556788888888763 3445556666 76 89999988865555532 232 0 111110
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEec
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~ 420 (497)
. .+...+|+++... . ....+....+.|+++|.++.
T Consensus 220 -~------~~~~~vD~vi~~~-----~----~~~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 220 -D------LPPEPLDAAIIFA-----P----VGALVPAALRAVKKGGRVVL 254 (329)
T ss_pred -c------cCCCcccEEEEcC-----C----cHHHHHHHHHHhhcCCEEEE
Confidence 1 1234588877321 0 02356777899999999883
No 477
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=71.50 E-value=22 Score=36.15 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=30.8
Q ss_pred CCCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 293 ~~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
..+.++.+||-.|+|. |..+..+|++ |+..|++++.++.-...+.
T Consensus 170 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 216 (350)
T cd08256 170 ANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR 216 (350)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHH
Confidence 3456788887766643 4456666766 8877999999886555443
No 478
>PRK05854 short chain dehydrogenase; Provisional
Probab=71.09 E-value=19 Score=36.35 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..++++|-.|++.|+ ++..+++.|+ +|+.+..+..-.+.+.+.+....- ..++.++..|+.+.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~-------------~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVP-------------DAKLSLRALDLSSL 77 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCC-------------CCceEEEEecCCCH
Confidence 467899999998876 4555667788 899999887665555444432210 13678888888665
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-..+.+|++|.+.
T Consensus 78 ~sv~~~~~~~~~~~~~iD~li~nA 101 (313)
T PRK05854 78 ASVAALGEQLRAEGRPIHLLINNA 101 (313)
T ss_pred HHHHHHHHHHHHhCCCccEEEECC
Confidence 321 001135689998763
No 479
>PRK06125 short chain dehydrogenase; Provisional
Probab=70.68 E-value=21 Score=34.51 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|++++.++...+.+.+.+.... ..++.++..|+.+.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~~D~~~~ 69 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH--------------GVDVAVHALDLSSP 69 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc--------------CCceEEEEecCCCH
Confidence 357899999987664 3445666788 99999998876655554443321 13577788877553
Q ss_pred ccccC--CCCCceeEEEecc
Q 010913 373 GESMQ--IQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~l~--~~~~~fDvIvs~~ 390 (497)
..-.. -..+++|++|.+.
T Consensus 70 ~~~~~~~~~~g~id~lv~~a 89 (259)
T PRK06125 70 EAREQLAAEAGDIDILVNNA 89 (259)
T ss_pred HHHHHHHHHhCCCCEEEECC
Confidence 21000 0125689988764
No 480
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=70.64 E-value=20 Score=34.49 Aligned_cols=79 Identities=24% Similarity=0.229 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..+++||-.|++.|+ ++..+++.|+ +|++++.++..++...+.++..+ .++.++.+|+.+.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~---------------~~~~~~~~D~~~~ 71 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG---------------LSAHALAFDVTDH 71 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC---------------ceEEEEEccCCCH
Confidence 467899999965543 3344555688 89999999876655555554433 2577788887653
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+.+|+||.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~d~li~~a 95 (255)
T PRK07523 72 DAVRAAIDAFEAEIGPIDILVNNA 95 (255)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 210 000124589988753
No 481
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=70.57 E-value=12 Score=39.30 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=46.8
Q ss_pred CEEEEEcCCC-CH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhccccc
Q 010913 299 AVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (497)
Q Consensus 299 ~~VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~~~l 376 (497)
++||-||||. |. .+..+|+.|..+|+..|.|....+.+.... + .+++.++.|+.+.+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---~---------------~~v~~~~vD~~d~~al~ 63 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---G---------------GKVEALQVDAADVDALV 63 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---c---------------ccceeEEecccChHHHH
Confidence 4789999975 43 344567778679999999987665444332 1 36778887776653211
Q ss_pred CCCCCceeEEEecc
Q 010913 377 QIQPHSVDVLVSEW 390 (497)
Q Consensus 377 ~~~~~~fDvIvs~~ 390 (497)
.+ -..+|+|++..
T Consensus 64 ~l-i~~~d~VIn~~ 76 (389)
T COG1748 64 AL-IKDFDLVINAA 76 (389)
T ss_pred HH-HhcCCEEEEeC
Confidence 11 23459998754
No 482
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.27 E-value=21 Score=33.95 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.+++++|-+|++.|+ +...+++.|+ +|+.++.++.-+..+.+.+...+ .++.++..|+.+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 66 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG---------------TEVRGYAANVTDE 66 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CceEEEEcCCCCH
Confidence 357899999986655 2334555687 89999999866655555444333 3677788876543
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-..+.+|+||.+.
T Consensus 67 ~~~~~~~~~~~~~~~~id~vi~~a 90 (253)
T PRK08217 67 EDVEATFAQIAEDFGQLNGLINNA 90 (253)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 210 000114689998753
No 483
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=70.22 E-value=6.6 Score=38.21 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCHhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh
Q 010913 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (497)
Q Consensus 297 ~~~~VLDvGCGtG~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~ 342 (497)
+..+++|+-||+|.+++.+.+.+. .|+.-|+++..+...+..++.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPGK-RVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---SS-EEEEEES-HHHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccccc-ceeeeechHHHHHHHHHHHhc
Confidence 689999999999999998876544 899999999988877756554
No 484
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=69.95 E-value=25 Score=35.48 Aligned_cols=43 Identities=33% Similarity=0.295 Sum_probs=30.5
Q ss_pred CCCCCCEEEEEcCCC-CHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 294 ~~~~~~~VLDvGCGt-G~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
.+.++.+||-.|||. |..+..+++. |+ +|++++.++...+.++
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~ 210 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDAL 210 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHH
Confidence 356778888788753 5555556665 77 8999999887666554
No 485
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=69.89 E-value=22 Score=33.54 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCC-CH-hHHHHHHcCCCEEEEEeCC
Q 010913 297 KGAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEAS 329 (497)
Q Consensus 297 ~~~~VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S 329 (497)
...+||-+|||. |. .+..|++.|.++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 567899999995 43 5777888899999999987
No 486
>smart00355 ZnF_C2H2 zinc finger.
Probab=69.80 E-value=3.6 Score=24.15 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.3
Q ss_pred ceecCCCCCCCHHHHHHHhhhhcC
Q 010913 48 LCLFCDAGYSSCDTLFEHCRLSHC 71 (497)
Q Consensus 48 ~CLFC~~~~~s~~~~l~Hm~~~H~ 71 (497)
.|-.|+..|.+...+..|++ .|.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCCcchhCCHHHHHHHHH-Hhc
Confidence 58899999999999999998 554
No 487
>PRK07062 short chain dehydrogenase; Provisional
Probab=69.79 E-value=21 Score=34.48 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..++++|-.|++.|+ ++..+++.|+ +|++++.++.-++.+.+.+....- ..++.++..|+.+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~ 71 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFP-------------GARLLAARCDVLDE 71 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCC-------------CceEEEEEecCCCH
Confidence 467899999988875 4555666788 899999988766555444433211 13577788877654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+.+|++|.+.
T Consensus 72 ~~v~~~~~~~~~~~g~id~li~~A 95 (265)
T PRK07062 72 ADVAAFAAAVEARFGGVDMLVNNA 95 (265)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 310 000124689988753
No 488
>PRK08589 short chain dehydrogenase; Validated
Probab=69.62 E-value=20 Score=35.05 Aligned_cols=78 Identities=28% Similarity=0.339 Sum_probs=48.5
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|++.|+ ++..+++.|+ +|++++.++. +....+.+...+ .++.++.+|+.+.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~-~~~~~~~~~~~~---------------~~~~~~~~Dl~~~ 66 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEA-VSETVDKIKSNG---------------GKAKAYHVDISDE 66 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHH-HHHHHHHHHhcC---------------CeEEEEEeecCCH
Confidence 467899999988876 4556667788 8999999844 333333333332 3577788887654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+.+|++|.+.
T Consensus 67 ~~~~~~~~~~~~~~g~id~li~~A 90 (272)
T PRK08589 67 QQVKDFASEIKEQFGRVDVLFNNA 90 (272)
T ss_pred HHHHHHHHHHHHHcCCcCEEEECC
Confidence 210 000124689998764
No 489
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=69.56 E-value=25 Score=31.02 Aligned_cols=89 Identities=20% Similarity=0.246 Sum_probs=51.4
Q ss_pred EEEEcCCC-CH-hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecc-------hhh
Q 010913 301 VMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM-------VEE 371 (497)
Q Consensus 301 VLDvGCGt-G~-ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd-------~~~ 371 (497)
|+-+|+|. |. ++..|++.|. .|+.+.-++ -++. ++..|+ ++...+ ...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~----~~~~g~-----------------~~~~~~~~~~~~~~~~ 57 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEA----IKEQGL-----------------TITGPDGDETVQPPIV 57 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHH----HHHHCE-----------------EEEETTEEEEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHh----hhheeE-----------------EEEecccceecccccc
Confidence 45678775 33 4555666677 899999987 4432 223332 111111 000
Q ss_pred cccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEe
Q 010913 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (497)
Q Consensus 372 l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li 419 (497)
... .......+|+|+... .......++..+.+++.|+..++
T Consensus 58 ~~~-~~~~~~~~D~viv~v------Ka~~~~~~l~~l~~~~~~~t~iv 98 (151)
T PF02558_consen 58 ISA-PSADAGPYDLVIVAV------KAYQLEQALQSLKPYLDPNTTIV 98 (151)
T ss_dssp ESS-HGHHHSTESEEEE-S------SGGGHHHHHHHHCTGEETTEEEE
T ss_pred cCc-chhccCCCcEEEEEe------cccchHHHHHHHhhccCCCcEEE
Confidence 000 001356799998532 22356779999999999997776
No 490
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=69.09 E-value=43 Score=32.66 Aligned_cols=45 Identities=33% Similarity=0.376 Sum_probs=32.9
Q ss_pred CCCCCCCCEEEEEcC--CCCHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 292 NPSLMKGAVVMDIGC--GTGILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 292 ~~~~~~~~~VLDvGC--GtG~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
...+.++.+||-.|+ +.|..+..++++ |+ .|++++.++...+.++
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 178 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELAR 178 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence 345678899999995 346667777777 77 7999998887665553
No 491
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=68.95 E-value=21 Score=34.12 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh
Q 010913 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (497)
Q Consensus 295 ~~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~ 342 (497)
..++++||-.|++.|+ ++..+++.|+ +|++++.+...+....+.+..
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 4578999999976554 3344555687 999999998665544444433
No 492
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=68.86 E-value=23 Score=34.07 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
.++++||-.|+..|+ ++..+++.|+ +|+.++.+...++...+.+...+ .++.++.+|+.+.
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~---------------~~~~~~~~Dl~d~ 73 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG---------------IDALWIAADVADE 73 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CeEEEEEccCCCH
Confidence 467899999965544 2334455588 89999998876665555544333 3677888888764
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
..- +.-..+.+|+|+...
T Consensus 74 ~~i~~~~~~~~~~~~~id~vi~~a 97 (259)
T PRK08213 74 ADIERLAEETLERFGHVDILVNNA 97 (259)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 310 000124689988763
No 493
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=68.63 E-value=23 Score=34.36 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=52.0
Q ss_pred CCCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhc
Q 010913 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l 372 (497)
..++++|-.|++.|+ ++..+++.|+ +|+.++.++..+..+.+.++..+ .++.++.+|+.+.
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~~~ 71 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG---------------IEAHGYVCDVTDE 71 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC---------------CceEEEEcCCCCH
Confidence 467899999998875 4555677788 79999988876665555554433 3677888887654
Q ss_pred ccc------cCCCCCceeEEEecc
Q 010913 373 GES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 373 ~~~------l~~~~~~fDvIvs~~ 390 (497)
... +.-.-+++|++|.+.
T Consensus 72 ~~~~~~~~~~~~~~~~id~li~~a 95 (265)
T PRK07097 72 DGVQAMVSQIEKEVGVIDILVNNA 95 (265)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECC
Confidence 310 000124689998764
No 494
>PRK06914 short chain dehydrogenase; Provisional
Probab=68.61 E-value=24 Score=34.45 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 297 KGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.+++||-.|++.|+ +...+++.|+ +|++++.++...+...+.....+. ..++.++.+|+.+..
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~d~~ 67 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNL-------------QQNIKVQQLDVTDQN 67 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCC-------------CCceeEEecCCCCHH
Confidence 35688999976654 3444566687 899999887655444433333222 146888888886643
Q ss_pred cccC-----CCCCceeEEEec
Q 010913 374 ESMQ-----IQPHSVDVLVSE 389 (497)
Q Consensus 374 ~~l~-----~~~~~fDvIvs~ 389 (497)
.-.. -.-+++|+|+.+
T Consensus 68 ~~~~~~~~~~~~~~id~vv~~ 88 (280)
T PRK06914 68 SIHNFQLVLKEIGRIDLLVNN 88 (280)
T ss_pred HHHHHHHHHHhcCCeeEEEEC
Confidence 1000 012467988865
No 495
>PRK05866 short chain dehydrogenase; Provisional
Probab=68.55 E-value=23 Score=35.31 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCCH---hHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhhcc
Q 010913 297 KGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (497)
Q Consensus 297 ~~~~VLDvGCGtG~---ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~l~ 373 (497)
.+++||-.|++.|+ ++..+++.|+ +|++++.+...++...+.+...+ ..+.++.+|+.+..
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~---------------~~~~~~~~Dl~d~~ 102 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG---------------GDAMAVPCDLSDLD 102 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEccCCCHH
Confidence 56789999987765 3444556687 89999999766654444443322 35677888876532
Q ss_pred cc------cCCCCCceeEEEecc
Q 010913 374 ES------MQIQPHSVDVLVSEW 390 (497)
Q Consensus 374 ~~------l~~~~~~fDvIvs~~ 390 (497)
.. +.-.-+.+|++|.+.
T Consensus 103 ~v~~~~~~~~~~~g~id~li~~A 125 (293)
T PRK05866 103 AVDALVADVEKRIGGVDILINNA 125 (293)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 10 000124689998753
No 496
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=68.52 E-value=36 Score=34.20 Aligned_cols=44 Identities=34% Similarity=0.508 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcCC-CCHhHHHHHHc-CCCEEEEEeCCHHHHHHHH
Q 010913 294 SLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (497)
Q Consensus 294 ~~~~~~~VLDvGCG-tG~ls~~la~~-G~~~V~gvD~S~~~i~~A~ 337 (497)
.+.+|.+||-.|+| .|.....+|++ |+..|+++..++...+.++
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~ 207 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK 207 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 46788899888875 35556666666 7744999998887766553
No 497
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=68.40 E-value=44 Score=36.42 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=65.7
Q ss_pred CEEEEEcCCC-C-HhHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCceEEEecch
Q 010913 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (497)
Q Consensus 299 ~~VLDvGCGt-G-~ls~~la~~G~~~V~gvD~S~~~i~~A~~~~~~-------~gl~~~~~~~~~~~~~~~~i~~i~gd~ 369 (497)
++|-=||+|+ | .++..++++|. .|+..|.++..++.+.+.++. .|.... . .....-.+++... +.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~---~-~~~~~~~~i~~~~-~~ 81 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTA---E-QADAALARLRPVE-AL 81 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH---H-HHHHHHhCeEEeC-CH
Confidence 5788899996 3 46667788888 899999999999887655432 120000 0 0000001234332 23
Q ss_pred hhcccccCCCCCceeEEEeccccccccChhhHHHHHHHHhccccCCcEEeccCceeEE
Q 010913 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (497)
Q Consensus 370 ~~l~~~l~~~~~~fDvIvs~~~~~~l~~~~~l~~vL~~~~r~LkpgG~li~~~~~~~~ 427 (497)
..+ ...|+|+-.. .....-...++.++.++++|+.++..++.++..
T Consensus 82 ~~~--------~~aDlViEav----~E~~~vK~~vf~~l~~~~~~~ailasntStl~i 127 (507)
T PRK08268 82 ADL--------ADCDLVVEAI----VERLDVKQALFAQLEAIVSPDCILATNTSSLSI 127 (507)
T ss_pred HHh--------CCCCEEEEcC----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 222 2579998532 223334456677788888888888766666543
No 498
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=68.35 E-value=13 Score=33.04 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=25.7
Q ss_pred EEcCCCC--HhHHHHH--Hc-CCCEEEEEeCCHHHHHHHHHH--HHhC
Q 010913 303 DIGCGTG--ILSLFAA--QA-GASRVIAVEASEKMAAVATQI--AKDN 343 (497)
Q Consensus 303 DvGCGtG--~ls~~la--~~-G~~~V~gvD~S~~~i~~A~~~--~~~~ 343 (497)
|||++.| ..+..++ .. +..+|+++|+++..++..+++ +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 4444443 23 335899999999999888888 5444
No 499
>PRK07904 short chain dehydrogenase; Provisional
Probab=68.33 E-value=20 Score=34.83 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCCCHh---HHHHHHcCCCEEEEEeCCHHH-HHHHHHHHHhCCCCCCCCCCCCCCCCCCceEEEecchhh
Q 010913 296 MKGAVVMDIGCGTGIL---SLFAAQAGASRVIAVEASEKM-AAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (497)
Q Consensus 296 ~~~~~VLDvGCGtG~l---s~~la~~G~~~V~gvD~S~~~-i~~A~~~~~~~gl~~~~~~~~~~~~~~~~i~~i~gd~~~ 371 (497)
..+++||-.|++.|+- +..+++.|..+|+.++.++.- ++.+.+.+...+- .++.++.+|+.+
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~--------------~~v~~~~~D~~~ 71 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA--------------SSVEVIDFDALD 71 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC--------------CceEEEEecCCC
Confidence 4678999999977653 344455553389999887653 4444343433321 368888888765
Q ss_pred cccc---cC--CCCCceeEEEec
Q 010913 372 LGES---MQ--IQPHSVDVLVSE 389 (497)
Q Consensus 372 l~~~---l~--~~~~~fDvIvs~ 389 (497)
...- +. ...+..|+++.+
T Consensus 72 ~~~~~~~~~~~~~~g~id~li~~ 94 (253)
T PRK07904 72 TDSHPKVIDAAFAGGDVDVAIVA 94 (253)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEe
Confidence 4310 00 112579988864
No 500
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=68.32 E-value=15 Score=38.94 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCHh--HHHHHHcCCCEEEEEeCCHHHHHH
Q 010913 299 AVVMDIGCGTGIL--SLFAAQAGASRVIAVEASEKMAAV 335 (497)
Q Consensus 299 ~~VLDvGCGtG~l--s~~la~~G~~~V~gvD~S~~~i~~ 335 (497)
.+|-=||.|.-.+ +..++++|. +|+++|.++..++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHH
Confidence 4688889997544 445667787 89999999987663
Done!