Query 010914
Match_columns 497
No_of_seqs 153 out of 247
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751 Beclin-like protein [S 100.0 4E-104 9E-109 813.6 35.1 416 30-457 17-442 (447)
2 PF04111 APG6: Autophagy prote 100.0 2.3E-97 5E-102 753.3 24.9 304 149-460 1-313 (314)
3 PF10186 Atg14: UV radiation r 99.4 7.7E-11 1.7E-15 116.5 26.1 244 148-394 11-273 (302)
4 KOG2751 Beclin-like protein [S 99.1 3.8E-10 8.1E-15 118.6 10.7 332 44-467 21-398 (447)
5 KOG2896 UV radiation resistanc 98.6 1.2E-05 2.5E-10 84.0 22.3 150 230-394 135-309 (377)
6 PF04111 APG6: Autophagy prote 97.4 0.044 9.5E-07 56.9 22.9 213 170-399 42-311 (314)
7 COG1579 Zn-ribbon protein, pos 96.9 0.04 8.7E-07 55.4 15.8 126 157-282 10-138 (239)
8 KOG0250 DNA repair protein RAD 96.8 0.064 1.4E-06 63.1 18.8 132 153-284 326-466 (1074)
9 TIGR02169 SMC_prok_A chromosom 96.1 0.19 4.2E-06 58.7 17.0 68 212-279 434-501 (1164)
10 PF04156 IncA: IncA protein; 95.8 0.55 1.2E-05 44.5 16.1 97 158-260 89-185 (191)
11 PRK03918 chromosome segregatio 95.7 0.5 1.1E-05 54.4 18.4 23 244-266 304-326 (880)
12 TIGR02169 SMC_prok_A chromosom 95.7 0.55 1.2E-05 55.0 18.6 13 375-387 534-546 (1164)
13 PF11932 DUF3450: Protein of u 95.6 1.1 2.4E-05 44.7 18.1 30 278-309 163-192 (251)
14 COG1196 Smc Chromosome segrega 95.6 0.4 8.6E-06 57.7 17.3 101 216-324 436-540 (1163)
15 KOG0979 Structural maintenance 95.6 0.68 1.5E-05 54.6 18.3 111 151-262 197-312 (1072)
16 PHA02562 46 endonuclease subun 95.6 0.3 6.4E-06 53.3 15.0 33 148-181 284-316 (562)
17 COG1579 Zn-ribbon protein, pos 95.5 0.85 1.8E-05 46.1 16.6 102 196-309 94-203 (239)
18 PRK11637 AmiB activator; Provi 95.3 0.38 8.1E-06 51.5 14.4 74 160-239 43-116 (428)
19 PF04849 HAP1_N: HAP1 N-termin 95.3 1.3 2.8E-05 46.3 17.6 158 126-284 116-306 (306)
20 PF08317 Spc7: Spc7 kinetochor 95.1 1.3 2.8E-05 46.1 17.2 29 124-152 78-106 (325)
21 TIGR02168 SMC_prok_B chromosom 95.0 1.5 3.3E-05 51.2 19.2 11 376-386 533-543 (1179)
22 PRK11637 AmiB activator; Provi 95.0 1.7 3.7E-05 46.6 18.2 65 203-267 175-239 (428)
23 TIGR02168 SMC_prok_B chromosom 94.9 1.7 3.7E-05 50.8 19.3 20 376-395 1025-1044(1179)
24 KOG0250 DNA repair protein RAD 94.5 1.3 2.7E-05 52.8 16.8 118 215-359 390-508 (1074)
25 COG4942 Membrane-bound metallo 94.5 1 2.3E-05 48.8 14.8 85 148-242 26-110 (420)
26 PF07888 CALCOCO1: Calcium bin 94.4 1.9 4.2E-05 48.2 17.1 34 206-239 200-233 (546)
27 smart00787 Spc7 Spc7 kinetocho 94.4 3.5 7.6E-05 43.1 18.2 159 124-282 73-260 (312)
28 PF10168 Nup88: Nuclear pore c 94.3 1.6 3.4E-05 50.4 16.8 169 146-337 529-708 (717)
29 KOG0996 Structural maintenance 94.2 1.5 3.2E-05 52.6 16.4 95 207-317 537-633 (1293)
30 KOG0994 Extracellular matrix g 94.2 1 2.2E-05 53.8 15.0 80 212-294 1225-1307(1758)
31 PF04156 IncA: IncA protein; 94.2 4.1 8.9E-05 38.6 16.9 66 161-232 85-150 (191)
32 TIGR02894 DNA_bind_RsfA transc 94.1 0.89 1.9E-05 43.4 11.9 17 158-174 55-71 (161)
33 PRK09039 hypothetical protein; 94.1 2.7 5.7E-05 44.4 16.8 22 433-454 282-303 (343)
34 PRK03918 chromosome segregatio 93.9 2.2 4.7E-05 49.3 17.1 8 142-149 133-140 (880)
35 PF00261 Tropomyosin: Tropomyo 93.8 2.9 6.3E-05 41.5 15.7 80 203-282 125-204 (237)
36 PRK02224 chromosome segregatio 93.7 2.4 5.2E-05 49.1 17.1 7 351-357 754-760 (880)
37 PF13851 GAS: Growth-arrest sp 93.7 6.6 0.00014 38.5 17.6 27 158-184 28-54 (201)
38 PHA02562 46 endonuclease subun 93.7 2 4.4E-05 46.8 15.7 24 162-185 186-209 (562)
39 PRK02224 chromosome segregatio 93.7 1.7 3.6E-05 50.4 15.7 28 256-283 594-621 (880)
40 PF07888 CALCOCO1: Calcium bin 93.5 3.3 7.2E-05 46.4 16.8 32 196-227 204-235 (546)
41 COG1196 Smc Chromosome segrega 93.4 3.6 7.8E-05 49.8 18.4 56 126-182 150-218 (1163)
42 PRK10884 SH3 domain-containing 93.4 2 4.3E-05 42.4 13.5 80 158-246 94-173 (206)
43 KOG0995 Centromere-associated 93.4 4.8 0.0001 45.2 17.7 16 244-259 343-358 (581)
44 KOG4360 Uncharacterized coiled 93.4 3.4 7.3E-05 45.9 16.2 124 169-295 193-316 (596)
45 PF10146 zf-C4H2: Zinc finger- 93.3 3.1 6.6E-05 41.8 14.8 43 196-238 37-79 (230)
46 COG2433 Uncharacterized conser 93.2 3.6 7.8E-05 46.5 16.5 89 197-285 421-512 (652)
47 PRK04863 mukB cell division pr 93.2 3.2 6.9E-05 51.6 17.6 22 160-181 317-338 (1486)
48 TIGR01843 type_I_hlyD type I s 93.0 3.8 8.2E-05 42.6 15.7 48 260-308 245-292 (423)
49 PF00261 Tropomyosin: Tropomyo 92.8 10 0.00022 37.7 17.8 83 198-280 127-209 (237)
50 COG4026 Uncharacterized protei 92.8 0.65 1.4E-05 46.7 9.1 73 195-267 139-211 (290)
51 KOG0995 Centromere-associated 92.8 8.5 0.00018 43.3 18.5 30 157-186 259-288 (581)
52 PF10473 CENP-F_leu_zip: Leuci 92.7 8.8 0.00019 36.0 16.1 47 197-243 58-104 (140)
53 PF10211 Ax_dynein_light: Axon 92.6 7 0.00015 37.9 15.8 67 207-279 122-188 (189)
54 PF05266 DUF724: Protein of un 92.5 8 0.00017 37.8 16.2 55 217-271 129-183 (190)
55 TIGR01843 type_I_hlyD type I s 92.5 11 0.00023 39.3 18.2 21 161-181 85-105 (423)
56 PRK04778 septation ring format 92.5 3.3 7.1E-05 46.3 15.3 56 126-183 254-312 (569)
57 PF08317 Spc7: Spc7 kinetochor 92.5 8.8 0.00019 40.0 17.4 29 156-184 148-176 (325)
58 COG4372 Uncharacterized protei 92.4 6.3 0.00014 42.6 16.2 30 209-238 148-177 (499)
59 KOG0243 Kinesin-like protein [ 92.3 5.9 0.00013 47.4 17.3 134 138-271 419-556 (1041)
60 PF15035 Rootletin: Ciliary ro 92.1 9.3 0.0002 37.1 15.9 97 156-252 15-132 (182)
61 PF12718 Tropomyosin_1: Tropom 92.0 10 0.00023 35.3 15.6 65 210-281 78-142 (143)
62 KOG0977 Nuclear envelope prote 92.0 9.1 0.0002 43.0 17.6 21 122-142 64-84 (546)
63 PRK04863 mukB cell division pr 91.8 3.8 8.3E-05 50.9 15.9 34 249-282 444-477 (1486)
64 TIGR01000 bacteriocin_acc bact 91.8 6.4 0.00014 42.6 16.1 28 159-186 174-201 (457)
65 PF09789 DUF2353: Uncharacteri 91.7 5.2 0.00011 42.2 14.6 126 154-279 83-228 (319)
66 PF08614 ATG16: Autophagy prot 91.7 1.3 2.8E-05 42.7 9.6 23 160-182 77-99 (194)
67 KOG0964 Structural maintenance 91.6 3.8 8.2E-05 48.6 14.5 172 194-386 414-618 (1200)
68 PF11559 ADIP: Afadin- and alp 91.6 11 0.00024 34.7 16.2 6 276-281 141-146 (151)
69 PF12325 TMF_TATA_bd: TATA ele 91.6 11 0.00023 34.5 16.0 32 156-187 15-46 (120)
70 PRK10884 SH3 domain-containing 91.6 4.4 9.5E-05 40.1 13.2 18 266-283 151-168 (206)
71 KOG1962 B-cell receptor-associ 91.5 4.3 9.3E-05 40.6 13.1 16 8-23 22-37 (216)
72 TIGR03185 DNA_S_dndD DNA sulfu 91.4 5.9 0.00013 44.9 15.9 64 166-236 184-247 (650)
73 PF06156 DUF972: Protein of un 91.4 0.8 1.7E-05 40.9 7.2 15 285-300 81-95 (107)
74 KOG0999 Microtubule-associated 91.4 7.6 0.00016 43.7 15.9 30 196-225 154-183 (772)
75 PF06120 Phage_HK97_TLTM: Tail 91.3 7.3 0.00016 40.8 15.2 74 161-235 38-111 (301)
76 PF15619 Lebercilin: Ciliary p 91.3 10 0.00022 37.1 15.4 15 161-175 23-37 (194)
77 COG4985 ABC-type phosphate tra 91.3 6 0.00013 40.2 13.8 103 194-323 160-270 (289)
78 PF00038 Filament: Intermediat 91.2 19 0.00041 36.6 19.3 73 203-278 214-286 (312)
79 KOG0996 Structural maintenance 91.0 10 0.00022 46.0 17.4 16 375-390 1134-1149(1293)
80 PF15285 BH3: Beclin-1 BH3 dom 90.8 0.11 2.4E-06 35.0 0.9 19 125-143 7-25 (25)
81 PRK04778 septation ring format 90.7 8.2 0.00018 43.2 16.0 73 198-270 355-427 (569)
82 PF12325 TMF_TATA_bd: TATA ele 90.7 7.5 0.00016 35.5 12.9 43 196-238 21-63 (120)
83 PF10146 zf-C4H2: Zinc finger- 90.6 15 0.00032 37.0 16.0 64 210-273 37-100 (230)
84 TIGR00606 rad50 rad50. This fa 90.2 6 0.00013 48.5 15.5 10 295-306 1155-1164(1311)
85 TIGR00606 rad50 rad50. This fa 90.1 15 0.00033 45.1 18.7 38 194-231 825-862 (1311)
86 KOG2072 Translation initiation 90.0 9.5 0.00021 44.7 15.7 145 134-282 522-698 (988)
87 PF08614 ATG16: Autophagy prot 90.0 7.7 0.00017 37.4 13.2 15 252-266 163-177 (194)
88 PF09755 DUF2046: Uncharacteri 90.0 18 0.0004 38.0 16.6 12 125-136 24-35 (310)
89 KOG4673 Transcription factor T 90.0 25 0.00055 40.7 18.7 49 136-186 390-438 (961)
90 PRK01156 chromosome segregatio 90.0 11 0.00023 44.1 16.7 34 249-282 411-444 (895)
91 KOG0161 Myosin class II heavy 89.9 16 0.00034 46.7 18.8 36 213-248 951-986 (1930)
92 PF10481 CENP-F_N: Cenp-F N-te 89.9 17 0.00037 37.7 16.0 113 159-288 20-136 (307)
93 PF09726 Macoilin: Transmembra 89.8 7 0.00015 45.2 14.7 27 213-239 546-572 (697)
94 PRK01156 chromosome segregatio 89.8 12 0.00026 43.7 17.0 19 151-169 167-185 (895)
95 PF09755 DUF2046: Uncharacteri 89.7 25 0.00054 37.0 17.3 58 158-215 136-202 (310)
96 COG4942 Membrane-bound metallo 89.7 30 0.00065 37.9 18.5 11 291-301 285-295 (420)
97 COG2433 Uncharacterized conser 89.6 6.4 0.00014 44.6 13.7 78 197-274 428-508 (652)
98 PRK09039 hypothetical protein; 89.5 17 0.00036 38.5 16.3 26 156-181 80-105 (343)
99 PF09789 DUF2353: Uncharacteri 89.4 23 0.00051 37.4 17.0 167 161-337 13-223 (319)
100 PF07106 TBPIP: Tat binding pr 89.2 4.6 0.0001 37.9 10.8 70 151-220 66-138 (169)
101 TIGR02680 conserved hypothetic 89.1 11 0.00023 46.7 16.5 34 427-460 608-641 (1353)
102 PF10498 IFT57: Intra-flagella 89.1 14 0.00031 39.4 15.5 45 195-239 249-293 (359)
103 PF10212 TTKRSYEDQ: Predicted 89.0 19 0.00041 40.3 16.7 78 203-283 439-516 (518)
104 TIGR02977 phageshock_pspA phag 89.0 19 0.00041 35.4 15.3 45 132-178 3-52 (219)
105 KOG1853 LIS1-interacting prote 88.9 18 0.0004 37.3 15.2 81 204-287 51-134 (333)
106 KOG0804 Cytoplasmic Zn-finger 88.7 19 0.00041 39.7 16.1 19 260-278 427-445 (493)
107 PF00038 Filament: Intermediat 88.7 30 0.00064 35.2 17.7 34 248-281 104-137 (312)
108 KOG0161 Myosin class II heavy 88.7 25 0.00055 45.0 19.3 22 210-231 962-983 (1930)
109 PF12718 Tropomyosin_1: Tropom 88.7 21 0.00045 33.3 16.8 30 203-232 33-62 (143)
110 PF09730 BicD: Microtubule-ass 88.7 24 0.00051 41.1 17.7 35 197-231 82-116 (717)
111 PF05384 DegS: Sensor protein 88.6 23 0.00051 33.8 16.1 65 196-260 46-118 (159)
112 PF09726 Macoilin: Transmembra 88.2 26 0.00057 40.6 17.8 31 156-186 417-447 (697)
113 KOG0288 WD40 repeat protein Ti 88.0 15 0.00033 40.0 14.7 107 161-267 10-117 (459)
114 PF10168 Nup88: Nuclear pore c 88.0 37 0.00081 39.5 19.0 24 259-282 637-660 (717)
115 COG4372 Uncharacterized protei 87.9 31 0.00067 37.6 16.8 10 446-455 453-462 (499)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.9 21 0.00045 32.5 16.9 33 248-280 99-131 (132)
117 PF04012 PspA_IM30: PspA/IM30 87.8 28 0.0006 33.8 18.2 127 146-277 21-149 (221)
118 COG5185 HEC1 Protein involved 87.7 27 0.00058 38.9 16.5 26 123-153 153-178 (622)
119 KOG2264 Exostosin EXT1L [Signa 87.7 4.8 0.0001 45.4 11.1 84 210-307 91-182 (907)
120 PF10186 Atg14: UV radiation r 87.5 32 0.00069 34.2 17.7 39 201-239 59-97 (302)
121 KOG0999 Microtubule-associated 87.4 20 0.00044 40.5 15.5 63 200-262 109-185 (772)
122 KOG1962 B-cell receptor-associ 87.3 9 0.0002 38.3 11.8 7 154-160 112-118 (216)
123 PF14662 CCDC155: Coiled-coil 87.1 33 0.00072 33.9 16.6 40 199-238 75-114 (193)
124 KOG0933 Structural maintenance 87.0 24 0.00051 42.4 16.5 30 410-443 1053-1082(1174)
125 TIGR03007 pepcterm_ChnLen poly 86.9 35 0.00075 37.1 17.2 36 248-283 349-384 (498)
126 TIGR01010 BexC_CtrB_KpsE polys 86.9 43 0.00093 35.0 19.3 165 155-330 168-345 (362)
127 PF00769 ERM: Ezrin/radixin/mo 86.8 16 0.00035 36.9 13.6 39 203-241 59-97 (246)
128 TIGR03185 DNA_S_dndD DNA sulfu 86.7 44 0.00095 38.0 18.4 43 197-239 427-469 (650)
129 TIGR03752 conj_TIGR03752 integ 86.5 9.2 0.0002 42.3 12.4 32 250-281 112-143 (472)
130 KOG0933 Structural maintenance 86.5 23 0.0005 42.5 16.1 20 163-182 786-805 (1174)
131 KOG0982 Centrosomal protein Nu 86.4 24 0.00051 38.8 15.0 29 256-284 362-390 (502)
132 PRK00409 recombination and DNA 86.1 14 0.00031 43.2 14.4 22 122-143 387-408 (782)
133 PF05266 DUF724: Protein of un 86.0 36 0.00079 33.3 15.6 109 166-274 64-179 (190)
134 PF15070 GOLGA2L5: Putative go 85.9 28 0.00061 39.8 16.3 19 440-458 488-506 (617)
135 PF05700 BCAS2: Breast carcino 85.9 5.6 0.00012 39.3 9.6 46 195-240 172-217 (221)
136 KOG0980 Actin-binding protein 85.9 55 0.0012 38.9 18.5 81 203-283 436-516 (980)
137 KOG2391 Vacuolar sorting prote 85.8 54 0.0012 35.1 20.4 55 170-230 224-278 (365)
138 PF06160 EzrA: Septation ring 85.6 28 0.0006 39.1 15.9 180 151-335 276-486 (560)
139 TIGR01069 mutS2 MutS2 family p 85.4 12 0.00025 43.8 13.3 46 200-245 517-562 (771)
140 KOG0977 Nuclear envelope prote 85.3 33 0.00072 38.7 16.1 21 162-182 111-131 (546)
141 KOG1029 Endocytic adaptor prot 84.8 23 0.00049 41.6 14.7 14 47-60 126-139 (1118)
142 PRK11519 tyrosine kinase; Prov 84.8 43 0.00094 38.6 17.4 31 155-185 265-295 (719)
143 PF11932 DUF3450: Protein of u 84.6 32 0.0007 34.4 14.5 8 410-417 240-247 (251)
144 PRK10698 phage shock protein P 84.4 46 0.00099 33.1 16.5 51 226-276 99-149 (222)
145 PF05701 WEMBL: Weak chloropla 84.3 56 0.0012 36.5 17.5 41 198-238 316-356 (522)
146 TIGR02894 DNA_bind_RsfA transc 84.3 17 0.00037 34.9 11.6 31 208-238 100-130 (161)
147 PF00769 ERM: Ezrin/radixin/mo 84.2 50 0.0011 33.4 16.9 76 203-278 45-120 (246)
148 KOG1899 LAR transmembrane tyro 83.8 20 0.00042 41.2 13.4 21 133-153 84-105 (861)
149 KOG0612 Rho-associated, coiled 83.6 29 0.00063 42.4 15.4 13 169-181 513-525 (1317)
150 KOG0804 Cytoplasmic Zn-finger 83.5 30 0.00066 38.2 14.4 31 238-268 419-449 (493)
151 PRK09841 cryptic autophosphory 83.5 45 0.00098 38.5 16.8 34 153-186 263-296 (726)
152 PRK00409 recombination and DNA 83.4 23 0.00049 41.5 14.5 38 201-238 523-560 (782)
153 PF05667 DUF812: Protein of un 83.3 58 0.0013 37.2 17.2 94 224-329 424-517 (594)
154 KOG0964 Structural maintenance 83.2 24 0.00053 42.3 14.3 29 245-273 326-354 (1200)
155 PF11559 ADIP: Afadin- and alp 83.0 38 0.00083 31.1 13.7 27 202-228 77-103 (151)
156 KOG4438 Centromere-associated 83.0 51 0.0011 36.2 15.8 150 158-337 136-288 (446)
157 PF06005 DUF904: Protein of un 82.9 27 0.00058 29.2 11.7 41 201-241 7-47 (72)
158 PF11414 Suppressor_APC: Adeno 82.8 18 0.00039 31.1 10.1 57 196-252 5-63 (84)
159 TIGR03319 YmdA_YtgF conserved 82.7 33 0.00071 38.3 14.8 18 290-308 208-225 (514)
160 TIGR02680 conserved hypothetic 82.6 47 0.001 41.3 17.4 23 159-181 239-261 (1353)
161 PF10267 Tmemb_cc2: Predicted 82.5 29 0.00064 37.7 13.9 30 157-186 212-241 (395)
162 PF06005 DUF904: Protein of un 82.4 28 0.0006 29.1 11.5 34 206-239 19-52 (72)
163 PRK00106 hypothetical protein; 82.4 46 0.001 37.5 15.8 18 290-308 229-246 (535)
164 PRK10361 DNA recombination pro 82.3 85 0.0019 35.0 17.6 30 203-232 90-119 (475)
165 PRK13169 DNA replication intia 82.3 5.2 0.00011 36.1 6.9 15 285-300 78-92 (110)
166 PRK09841 cryptic autophosphory 82.2 49 0.0011 38.2 16.5 36 248-283 364-399 (726)
167 PF12329 TMF_DNA_bd: TATA elem 82.1 23 0.0005 29.5 10.3 29 210-238 17-45 (74)
168 TIGR03752 conj_TIGR03752 integ 82.0 15 0.00033 40.6 11.7 69 208-282 69-137 (472)
169 PRK12704 phosphodiesterase; Pr 81.7 39 0.00085 37.8 15.0 13 290-302 214-226 (520)
170 TIGR00570 cdk7 CDK-activating 81.6 32 0.00068 36.3 13.3 12 175-186 94-105 (309)
171 KOG4460 Nuclear pore complex, 81.5 1E+02 0.0023 35.1 17.7 42 120-163 525-569 (741)
172 KOG4674 Uncharacterized conser 81.5 67 0.0015 41.1 17.9 77 158-234 130-207 (1822)
173 KOG3647 Predicted coiled-coil 81.3 63 0.0014 33.8 14.9 32 125-156 54-85 (338)
174 TIGR01069 mutS2 MutS2 family p 81.3 32 0.0007 40.2 14.7 20 123-142 383-402 (771)
175 TIGR01000 bacteriocin_acc bact 81.3 86 0.0019 34.0 17.9 27 256-282 238-264 (457)
176 PF04849 HAP1_N: HAP1 N-termin 81.2 67 0.0015 33.9 15.5 83 195-277 164-264 (306)
177 TIGR02231 conserved hypothetic 81.1 27 0.00059 38.5 13.5 34 249-282 140-173 (525)
178 PF09730 BicD: Microtubule-ass 81.0 63 0.0014 37.8 16.6 79 195-273 66-147 (717)
179 TIGR02338 gimC_beta prefoldin, 80.9 26 0.00056 30.9 10.8 36 201-236 70-105 (110)
180 TIGR00634 recN DNA repair prot 80.8 54 0.0012 36.6 15.8 94 196-294 306-402 (563)
181 KOG4360 Uncharacterized coiled 80.8 47 0.001 37.3 14.7 70 197-266 232-301 (596)
182 PF08647 BRE1: BRE1 E3 ubiquit 80.5 37 0.00081 29.4 11.5 65 163-233 2-66 (96)
183 PF11180 DUF2968: Protein of u 80.1 58 0.0013 32.2 13.7 74 203-283 110-183 (192)
184 PF12128 DUF3584: Protein of u 80.1 78 0.0017 38.9 17.9 27 420-446 1026-1053(1201)
185 PF10234 Cluap1: Clusterin-ass 80.0 64 0.0014 33.4 14.7 31 201-231 186-216 (267)
186 PRK11281 hypothetical protein; 79.8 49 0.0011 40.5 15.8 26 160-185 83-108 (1113)
187 TIGR02231 conserved hypothetic 79.7 21 0.00045 39.4 12.0 43 196-238 129-171 (525)
188 cd00632 Prefoldin_beta Prefold 79.7 32 0.00069 30.0 10.9 37 201-237 66-102 (105)
189 KOG4673 Transcription factor T 79.3 70 0.0015 37.3 15.8 16 125-140 406-421 (961)
190 KOG1937 Uncharacterized conser 79.3 1.1E+02 0.0024 34.1 17.1 68 211-278 344-427 (521)
191 KOG0980 Actin-binding protein 79.2 99 0.0021 37.0 17.2 9 301-309 563-571 (980)
192 PF14197 Cep57_CLD_2: Centroso 79.1 24 0.00053 29.2 9.3 31 156-186 4-34 (69)
193 PF03961 DUF342: Protein of un 79.1 17 0.00036 39.5 10.9 87 143-229 320-406 (451)
194 cd07674 F-BAR_FCHO1 The F-BAR 79.0 76 0.0017 32.0 16.8 64 162-225 118-181 (261)
195 PF10473 CENP-F_leu_zip: Leuci 78.9 58 0.0013 30.6 17.5 33 199-231 53-85 (140)
196 KOG0979 Structural maintenance 78.9 57 0.0012 39.3 15.4 16 434-449 563-578 (1072)
197 PF07111 HCR: Alpha helical co 78.9 1.4E+02 0.003 34.9 18.8 85 196-280 174-275 (739)
198 KOG0976 Rho/Rac1-interacting s 78.9 79 0.0017 37.6 16.1 52 128-180 226-282 (1265)
199 PF12128 DUF3584: Protein of u 78.8 77 0.0017 38.9 17.3 11 420-430 581-591 (1201)
200 COG1382 GimC Prefoldin, chaper 78.8 38 0.00083 31.1 11.3 76 160-235 16-107 (119)
201 PF13851 GAS: Growth-arrest sp 78.6 70 0.0015 31.4 17.9 75 199-273 49-133 (201)
202 KOG0243 Kinesin-like protein [ 78.5 1.2E+02 0.0026 36.9 18.0 20 156-175 403-422 (1041)
203 KOG4403 Cell surface glycoprot 78.5 56 0.0012 36.2 14.2 67 254-331 347-414 (575)
204 PF05278 PEARLI-4: Arabidopsis 78.4 32 0.0007 35.6 12.0 153 124-283 93-264 (269)
205 COG1730 GIM5 Predicted prefold 78.3 44 0.00095 31.6 11.9 85 156-240 19-136 (145)
206 KOG0239 Kinesin (KAR3 subfamil 78.0 80 0.0017 36.6 16.2 61 203-263 232-292 (670)
207 PF07106 TBPIP: Tat binding pr 77.9 13 0.00028 34.9 8.5 30 202-231 76-105 (169)
208 KOG0982 Centrosomal protein Nu 77.8 79 0.0017 35.0 15.1 33 153-185 257-293 (502)
209 cd07593 BAR_MUG137_fungi The B 77.8 44 0.00095 33.3 12.5 76 171-252 111-186 (215)
210 COG3879 Uncharacterized protei 77.7 25 0.00054 36.0 10.8 51 258-310 136-186 (247)
211 PRK08032 fliD flagellar cappin 77.7 9.2 0.0002 41.8 8.4 50 217-269 411-460 (462)
212 cd07666 BAR_SNX7 The Bin/Amphi 77.6 87 0.0019 31.9 17.7 56 126-181 87-152 (243)
213 PF05701 WEMBL: Weak chloropla 77.6 1.1E+02 0.0024 34.2 16.8 32 249-280 409-440 (522)
214 COG4026 Uncharacterized protei 77.6 63 0.0014 33.0 13.3 10 133-142 75-84 (290)
215 PF15066 CAGE1: Cancer-associa 77.5 1E+02 0.0022 34.4 15.9 39 238-276 487-525 (527)
216 COG5185 HEC1 Protein involved 77.5 1.3E+02 0.0028 33.8 17.7 54 203-256 335-391 (622)
217 PF01920 Prefoldin_2: Prefoldi 77.4 14 0.00031 31.3 7.9 76 161-236 16-100 (106)
218 PRK12704 phosphodiesterase; Pr 77.3 1.3E+02 0.0028 33.8 18.8 10 216-225 104-113 (520)
219 PRK10869 recombination and rep 77.3 1.3E+02 0.0029 33.8 17.7 78 213-295 318-398 (553)
220 PF05667 DUF812: Protein of un 77.0 63 0.0014 36.9 14.9 26 159-184 330-355 (594)
221 PF02403 Seryl_tRNA_N: Seryl-t 76.7 36 0.00078 29.5 10.3 38 196-233 27-64 (108)
222 PF14662 CCDC155: Coiled-coil 76.6 83 0.0018 31.2 17.0 44 196-239 86-129 (193)
223 PRK03947 prefoldin subunit alp 76.4 39 0.00084 30.7 10.9 44 196-239 92-135 (140)
224 PF10174 Cast: RIM-binding pro 76.3 1.5E+02 0.0032 35.2 17.9 22 160-181 290-311 (775)
225 TIGR03007 pepcterm_ChnLen poly 76.0 92 0.002 33.8 15.5 28 157-184 161-188 (498)
226 PF08826 DMPK_coil: DMPK coile 75.7 18 0.00038 29.5 7.4 43 196-238 16-58 (61)
227 PF06160 EzrA: Septation ring 75.6 1.5E+02 0.0032 33.5 17.2 36 246-281 385-420 (560)
228 PRK06798 fliD flagellar cappin 75.5 10 0.00023 41.3 8.1 51 214-267 381-431 (440)
229 KOG4572 Predicted DNA-binding 75.4 93 0.002 37.1 15.5 55 239-293 994-1048(1424)
230 PF03961 DUF342: Protein of un 75.1 16 0.00035 39.6 9.4 75 205-280 334-408 (451)
231 KOG0971 Microtubule-associated 75.0 2E+02 0.0044 34.8 22.9 69 203-274 281-352 (1243)
232 PF03962 Mnd1: Mnd1 family; I 74.9 49 0.0011 32.2 11.7 65 160-231 65-129 (188)
233 PF09787 Golgin_A5: Golgin sub 74.7 1.4E+02 0.003 33.3 16.6 21 158-178 222-242 (511)
234 PF03962 Mnd1: Mnd1 family; I 74.6 36 0.00078 33.1 10.7 29 203-231 67-95 (188)
235 COG1340 Uncharacterized archae 74.2 1.2E+02 0.0026 31.9 16.5 83 196-278 163-245 (294)
236 PF09728 Taxilin: Myosin-like 74.1 1.2E+02 0.0026 31.8 15.8 23 371-393 260-282 (309)
237 KOG0240 Kinesin (SMY1 subfamil 73.8 1.7E+02 0.0037 33.5 18.6 65 204-268 413-484 (607)
238 PRK15422 septal ring assembly 73.8 58 0.0012 28.0 11.0 17 213-229 26-42 (79)
239 PRK09343 prefoldin subunit bet 73.5 53 0.0011 29.7 10.8 33 203-235 76-108 (121)
240 PRK10929 putative mechanosensi 73.2 1.7E+02 0.0038 35.9 18.0 15 314-328 261-275 (1109)
241 COG4477 EzrA Negative regulato 73.2 89 0.0019 35.4 14.3 105 223-336 379-490 (570)
242 KOG0971 Microtubule-associated 73.0 2.2E+02 0.0049 34.5 22.5 26 124-149 227-252 (1243)
243 KOG2391 Vacuolar sorting prote 72.6 33 0.00072 36.7 10.5 28 208-235 228-255 (365)
244 TIGR00998 8a0101 efflux pump m 72.6 52 0.0011 33.4 11.9 6 166-171 82-87 (334)
245 KOG4460 Nuclear pore complex, 72.3 1.1E+02 0.0024 34.9 14.8 118 153-279 566-687 (741)
246 smart00787 Spc7 Spc7 kinetocho 72.3 1.3E+02 0.0029 31.6 17.8 28 252-279 223-250 (312)
247 PF15070 GOLGA2L5: Putative go 72.3 1.1E+02 0.0023 35.3 15.2 13 383-395 421-433 (617)
248 KOG4643 Uncharacterized coiled 72.1 1.8E+02 0.0039 35.5 17.0 16 161-176 412-427 (1195)
249 PF10037 MRP-S27: Mitochondria 72.1 1.2E+02 0.0027 33.3 15.1 31 224-254 370-400 (429)
250 KOG4674 Uncharacterized conser 72.0 1.5E+02 0.0032 38.2 17.3 13 126-138 634-646 (1822)
251 KOG3800 Predicted E3 ubiquitin 71.9 20 0.00043 37.5 8.6 15 145-159 22-36 (300)
252 COG0419 SbcC ATPase involved i 71.8 2.1E+02 0.0045 34.1 18.0 29 153-181 167-195 (908)
253 KOG4809 Rab6 GTPase-interactin 71.5 1.3E+02 0.0027 34.4 15.0 30 444-473 602-631 (654)
254 PF14197 Cep57_CLD_2: Centroso 71.5 58 0.0012 27.0 10.4 34 248-281 34-67 (69)
255 PF05010 TACC: Transforming ac 71.4 1.1E+02 0.0025 30.4 17.6 53 200-252 71-123 (207)
256 KOG2077 JNK/SAPK-associated pr 71.4 61 0.0013 37.1 12.6 122 135-263 274-422 (832)
257 KOG0612 Rho-associated, coiled 71.3 47 0.001 40.8 12.4 16 377-392 671-686 (1317)
258 PF05529 Bap31: B-cell recepto 71.1 25 0.00055 33.6 8.8 35 205-239 154-188 (192)
259 PF11180 DUF2968: Protein of u 71.1 1.1E+02 0.0025 30.2 14.6 57 204-260 125-181 (192)
260 PF09738 DUF2051: Double stran 71.0 1E+02 0.0022 32.4 13.6 22 376-397 222-243 (302)
261 TIGR01005 eps_transp_fam exopo 70.9 2E+02 0.0044 33.1 22.8 30 252-281 374-403 (754)
262 PF15294 Leu_zip: Leucine zipp 70.7 1.1E+02 0.0023 32.0 13.5 43 196-238 130-172 (278)
263 KOG1029 Endocytic adaptor prot 70.4 1.3E+02 0.0029 35.7 15.2 10 383-392 602-611 (1118)
264 PF15619 Lebercilin: Ciliary p 70.2 1.1E+02 0.0025 29.9 17.8 64 208-274 121-184 (194)
265 PF13514 AAA_27: AAA domain 69.9 1.1E+02 0.0024 37.1 15.6 24 311-334 1018-1041(1111)
266 PF08172 CASP_C: CASP C termin 69.8 24 0.00052 35.9 8.6 38 248-285 87-124 (248)
267 KOG4302 Microtubule-associated 69.8 1.3E+02 0.0028 35.0 15.1 68 202-269 100-182 (660)
268 PF07200 Mod_r: Modifier of ru 69.7 90 0.0019 28.5 14.2 68 165-239 8-75 (150)
269 PF12777 MT: Microtubule-bindi 69.7 17 0.00038 38.1 7.9 17 322-339 310-326 (344)
270 PF15254 CCDC14: Coiled-coil d 69.5 2E+02 0.0044 34.1 16.5 78 202-282 466-543 (861)
271 PF05911 DUF869: Plant protein 69.5 93 0.002 36.7 14.2 17 318-334 734-750 (769)
272 KOG0993 Rab5 GTPase effector R 69.4 62 0.0013 35.6 11.8 90 143-239 91-182 (542)
273 PF06248 Zw10: Centromere/kine 69.4 1.1E+02 0.0023 34.6 14.4 32 153-184 10-46 (593)
274 TIGR02449 conserved hypothetic 69.2 42 0.00092 27.7 8.3 32 203-234 5-36 (65)
275 TIGR01005 eps_transp_fam exopo 69.1 1.4E+02 0.0029 34.6 15.5 19 308-326 420-439 (754)
276 COG1345 FliD Flagellar capping 69.0 17 0.00037 40.4 7.9 54 218-281 428-481 (483)
277 PF05911 DUF869: Plant protein 68.9 77 0.0017 37.4 13.4 38 197-234 595-632 (769)
278 cd00890 Prefoldin Prefoldin is 68.5 61 0.0013 28.4 10.0 35 201-235 90-124 (129)
279 KOG0972 Huntingtin interacting 68.5 1.3E+02 0.0028 32.0 13.4 43 196-238 257-299 (384)
280 PF04012 PspA_IM30: PspA/IM30 68.4 1.2E+02 0.0026 29.4 14.6 43 232-274 97-139 (221)
281 PF05557 MAD: Mitotic checkpoi 68.3 7.7 0.00017 44.5 5.3 125 156-280 398-536 (722)
282 PRK03947 prefoldin subunit alp 68.1 94 0.002 28.2 13.0 22 163-184 5-26 (140)
283 TIGR02473 flagell_FliJ flagell 68.0 88 0.0019 27.8 14.5 88 161-251 31-121 (141)
284 PF15290 Syntaphilin: Golgi-lo 68.0 1.5E+02 0.0033 31.1 13.9 65 213-286 118-182 (305)
285 cd00584 Prefoldin_alpha Prefol 67.7 76 0.0017 28.2 10.6 28 157-184 13-40 (129)
286 PF10481 CENP-F_N: Cenp-F N-te 67.7 91 0.002 32.6 12.1 20 262-281 96-115 (307)
287 PRK06800 fliH flagellar assemb 67.5 76 0.0016 31.5 11.0 11 329-339 137-147 (228)
288 PF10779 XhlA: Haemolysin XhlA 67.5 54 0.0012 26.8 8.8 53 195-247 3-55 (71)
289 PF05529 Bap31: B-cell recepto 67.4 40 0.00086 32.3 9.2 14 259-272 173-186 (192)
290 PF05276 SH3BP5: SH3 domain-bi 67.4 1.5E+02 0.0033 30.2 14.2 38 244-281 181-218 (239)
291 KOG3119 Basic region leucine z 67.3 32 0.00069 35.2 9.0 55 196-250 206-260 (269)
292 PRK11578 macrolide transporter 67.1 1.1E+02 0.0023 32.1 13.1 43 260-303 157-199 (370)
293 PLN02678 seryl-tRNA synthetase 66.9 52 0.0011 36.3 11.0 91 196-295 31-121 (448)
294 PF02841 GBP_C: Guanylate-bind 66.6 1.2E+02 0.0026 31.1 13.1 31 152-182 150-184 (297)
295 PF10174 Cast: RIM-binding pro 66.4 2.8E+02 0.006 33.0 17.6 37 244-280 469-505 (775)
296 COG0419 SbcC ATPase involved i 66.2 2.8E+02 0.0061 32.9 18.0 11 47-57 39-49 (908)
297 PRK07737 fliD flagellar cappin 65.9 25 0.00053 39.1 8.4 48 216-266 445-492 (501)
298 COG3206 GumC Uncharacterized p 65.7 1.7E+02 0.0036 31.8 14.6 113 158-276 286-402 (458)
299 KOG0946 ER-Golgi vesicle-tethe 65.6 2.6E+02 0.0056 33.5 16.3 57 201-257 660-716 (970)
300 PRK13729 conjugal transfer pil 65.5 20 0.00044 39.7 7.5 14 345-358 211-224 (475)
301 PF02388 FemAB: FemAB family; 65.5 20 0.00042 38.6 7.4 42 255-296 274-315 (406)
302 PRK13182 racA polar chromosome 65.2 59 0.0013 31.5 9.8 69 210-287 83-151 (175)
303 PRK06664 fliD flagellar hook-a 64.9 21 0.00045 41.2 7.8 52 214-268 602-653 (661)
304 KOG1103 Predicted coiled-coil 64.9 1.2E+02 0.0027 32.8 12.8 48 194-241 227-274 (561)
305 COG4717 Uncharacterized conser 64.6 2.2E+02 0.0048 34.2 15.7 98 205-302 774-879 (984)
306 PF13514 AAA_27: AAA domain 64.6 3.2E+02 0.0069 33.3 18.0 27 159-185 745-771 (1111)
307 PF14817 HAUS5: HAUS augmin-li 64.5 1.5E+02 0.0033 34.2 14.4 49 207-255 81-129 (632)
308 TIGR03319 YmdA_YtgF conserved 64.4 2.5E+02 0.0053 31.6 17.0 39 209-247 91-129 (514)
309 PF09304 Cortex-I_coil: Cortex 64.2 1.1E+02 0.0024 27.6 13.4 22 211-232 43-64 (107)
310 TIGR00634 recN DNA repair prot 64.0 1.8E+02 0.0039 32.6 14.8 10 415-424 513-522 (563)
311 KOG0018 Structural maintenance 63.8 3.1E+02 0.0068 33.7 16.9 13 434-446 590-602 (1141)
312 PF10805 DUF2730: Protein of u 63.8 52 0.0011 29.1 8.5 32 249-280 67-98 (106)
313 PF09763 Sec3_C: Exocyst compl 63.5 1.1E+02 0.0024 35.1 13.4 111 155-285 3-113 (701)
314 PF12999 PRKCSH-like: Glucosid 63.4 26 0.00057 34.1 7.1 14 144-157 97-110 (176)
315 TIGR02977 phageshock_pspA phag 63.2 1.6E+02 0.0034 29.0 14.6 51 226-276 99-149 (219)
316 COG3074 Uncharacterized protei 63.0 94 0.002 26.3 11.1 27 213-239 26-52 (79)
317 PF07061 Swi5: Swi5; InterPro 63.0 28 0.0006 29.9 6.4 10 244-253 43-52 (83)
318 PF15397 DUF4618: Domain of un 62.9 1.9E+02 0.0042 29.9 16.9 43 196-238 65-107 (258)
319 PF05130 FlgN: FlgN protein; 62.8 1E+02 0.0022 26.7 10.3 60 168-229 9-68 (143)
320 KOG4677 Golgi integral membran 62.7 1.2E+02 0.0025 33.9 12.4 103 197-309 308-422 (554)
321 PF12761 End3: Actin cytoskele 62.3 1.4E+02 0.003 29.7 11.9 22 256-277 162-183 (195)
322 KOG0994 Extracellular matrix g 62.1 3.4E+02 0.0075 33.9 16.8 16 126-141 1520-1535(1758)
323 KOG4571 Activating transcripti 62.0 30 0.00064 36.2 7.6 40 204-243 247-286 (294)
324 PF14257 DUF4349: Domain of un 62.0 51 0.0011 33.0 9.2 49 132-181 106-156 (262)
325 TIGR03017 EpsF chain length de 62.0 2.2E+02 0.0048 30.3 15.2 125 155-279 169-307 (444)
326 KOG1899 LAR transmembrane tyro 61.7 1.5E+02 0.0032 34.5 13.3 24 216-239 171-194 (861)
327 KOG1760 Molecular chaperone Pr 61.7 1.1E+02 0.0023 28.6 10.2 75 160-234 33-117 (131)
328 PF06637 PV-1: PV-1 protein (P 61.4 2.5E+02 0.0055 30.8 15.4 35 245-279 354-388 (442)
329 KOG0163 Myosin class VI heavy 61.2 2.3E+02 0.005 33.8 14.9 11 174-184 903-913 (1259)
330 KOG4005 Transcription factor X 61.0 88 0.0019 32.2 10.4 22 375-396 210-231 (292)
331 PF14257 DUF4349: Domain of un 60.9 1.7E+02 0.0037 29.3 12.7 61 258-327 166-226 (262)
332 KOG1853 LIS1-interacting prote 60.8 2.2E+02 0.0047 29.8 17.2 24 210-233 96-119 (333)
333 PF15188 CCDC-167: Coiled-coil 60.6 31 0.00068 29.9 6.3 24 261-284 43-66 (85)
334 KOG3564 GTPase-activating prot 60.5 64 0.0014 36.2 10.1 32 153-184 17-48 (604)
335 PF02996 Prefoldin: Prefoldin 60.4 47 0.001 28.9 7.7 80 159-238 5-117 (120)
336 PRK15422 septal ring assembly 60.4 1.1E+02 0.0024 26.3 10.8 9 261-269 67-75 (79)
337 TIGR03794 NHPM_micro_HlyD NHPM 60.3 2.4E+02 0.0052 30.1 17.9 48 261-309 227-274 (421)
338 PRK00888 ftsB cell division pr 60.3 29 0.00062 30.8 6.3 31 202-232 31-61 (105)
339 PRK05431 seryl-tRNA synthetase 60.0 79 0.0017 34.4 10.8 36 197-232 27-62 (425)
340 KOG4001 Axonemal dynein light 60.0 1E+02 0.0023 31.0 10.6 32 203-234 183-214 (259)
341 KOG4302 Microtubule-associated 59.9 95 0.0021 36.0 11.8 58 205-262 61-132 (660)
342 PRK10929 putative mechanosensi 59.8 4.1E+02 0.0089 32.9 17.5 42 250-291 282-323 (1109)
343 PRK05771 V-type ATP synthase s 59.7 37 0.00079 38.6 8.6 36 203-238 91-126 (646)
344 KOG0288 WD40 repeat protein Ti 59.7 2.1E+02 0.0046 31.6 13.6 15 324-338 206-220 (459)
345 PF14932 HAUS-augmin3: HAUS au 59.6 1.2E+02 0.0026 30.7 11.4 73 206-278 44-120 (256)
346 PRK08724 fliD flagellar cappin 59.5 44 0.00096 38.7 9.1 49 216-267 621-669 (673)
347 PRK10869 recombination and rep 59.5 2.3E+02 0.0051 31.9 14.7 11 414-424 502-512 (553)
348 TIGR00414 serS seryl-tRNA synt 59.4 87 0.0019 34.0 11.0 35 197-231 29-63 (418)
349 PF09731 Mitofilin: Mitochondr 59.3 2.9E+02 0.0064 30.8 17.1 10 131-140 226-235 (582)
350 KOG0946 ER-Golgi vesicle-tethe 59.3 74 0.0016 37.7 10.7 72 210-281 648-719 (970)
351 PRK13729 conjugal transfer pil 59.2 25 0.00053 39.1 6.8 14 219-232 97-110 (475)
352 PF03148 Tektin: Tektin family 59.1 2.6E+02 0.0056 30.1 16.9 29 255-283 325-353 (384)
353 PF02403 Seryl_tRNA_N: Seryl-t 59.0 92 0.002 26.9 9.2 14 162-175 34-47 (108)
354 PF03980 Nnf1: Nnf1 ; InterPr 59.0 1.2E+02 0.0027 26.4 10.6 76 158-233 15-108 (109)
355 COG4477 EzrA Negative regulato 59.0 3.2E+02 0.007 31.2 16.5 57 126-182 253-310 (570)
356 KOG0796 Spliceosome subunit [R 58.9 1.7E+02 0.0037 31.1 12.5 32 153-184 56-89 (319)
357 PF07058 Myosin_HC-like: Myosi 58.8 87 0.0019 33.2 10.3 20 159-178 2-21 (351)
358 PF13166 AAA_13: AAA domain 58.7 3.2E+02 0.0069 31.0 18.2 25 307-336 494-518 (712)
359 PF11365 DUF3166: Protein of u 58.2 75 0.0016 28.2 8.4 89 193-284 3-92 (96)
360 PF14712 Snapin_Pallidin: Snap 58.1 1.1E+02 0.0024 25.6 12.3 75 206-281 15-91 (92)
361 KOG0962 DNA repair protein RAD 58.1 4.1E+02 0.0089 33.4 17.0 27 194-220 822-848 (1294)
362 PF14817 HAUS5: HAUS augmin-li 58.0 3.2E+02 0.0068 31.8 15.5 22 434-455 576-597 (632)
363 PF10211 Ax_dynein_light: Axon 58.0 1.9E+02 0.0041 28.2 15.4 55 201-255 123-178 (189)
364 KOG1003 Actin filament-coating 58.0 2.1E+02 0.0045 28.7 16.5 70 213-282 103-172 (205)
365 COG1340 Uncharacterized archae 57.8 2.5E+02 0.0055 29.6 19.5 18 206-223 132-149 (294)
366 PF09744 Jnk-SapK_ap_N: JNK_SA 57.7 1.8E+02 0.0039 27.8 14.4 55 201-255 85-139 (158)
367 PF09798 LCD1: DNA damage chec 57.7 56 0.0012 37.8 9.5 59 210-274 2-60 (654)
368 PF10224 DUF2205: Predicted co 57.6 82 0.0018 27.0 8.3 42 207-249 18-59 (80)
369 PF09731 Mitofilin: Mitochondr 57.6 3.1E+02 0.0068 30.6 18.7 16 156-171 250-265 (582)
370 PF15290 Syntaphilin: Golgi-lo 57.2 2E+02 0.0044 30.2 12.5 36 204-239 67-102 (305)
371 KOG3758 Uncharacterized conser 57.0 3.4E+02 0.0073 31.5 15.1 135 134-282 16-151 (655)
372 KOG2196 Nuclear porin [Nuclear 56.8 2.4E+02 0.0052 29.1 14.4 42 196-237 118-159 (254)
373 PF01496 V_ATPase_I: V-type AT 56.8 7.7 0.00017 44.8 2.7 24 269-292 154-177 (759)
374 PF12777 MT: Microtubule-bindi 56.6 1.7E+02 0.0038 30.7 12.4 18 434-451 293-310 (344)
375 PRK10636 putative ABC transpor 56.4 66 0.0014 36.6 9.9 22 218-239 562-583 (638)
376 KOG0962 DNA repair protein RAD 56.4 3.2E+02 0.0069 34.3 15.7 84 212-299 885-969 (1294)
377 PF09304 Cortex-I_coil: Cortex 56.2 1.6E+02 0.0034 26.7 15.3 20 205-224 51-70 (107)
378 KOG3091 Nuclear pore complex, 55.9 1.7E+02 0.0036 33.0 12.3 27 241-267 453-479 (508)
379 KOG0978 E3 ubiquitin ligase in 55.8 4E+02 0.0087 31.3 18.1 74 210-283 543-616 (698)
380 PF07716 bZIP_2: Basic region 55.7 43 0.00093 25.9 5.9 33 202-234 22-54 (54)
381 PF06632 XRCC4: DNA double-str 55.4 1.9E+02 0.0042 30.9 12.5 59 209-267 148-207 (342)
382 KOG0249 LAR-interacting protei 55.3 2.7E+02 0.0058 33.0 14.1 38 202-239 220-257 (916)
383 KOG4196 bZIP transcription fac 55.3 46 0.001 31.1 6.8 30 203-232 79-108 (135)
384 KOG3091 Nuclear pore complex, 55.1 1.4E+02 0.003 33.6 11.6 16 79-94 181-196 (508)
385 PF02050 FliJ: Flagellar FliJ 54.8 1.3E+02 0.0027 25.2 14.5 50 198-247 52-101 (123)
386 KOG0963 Transcription factor/C 54.7 4E+02 0.0086 30.9 15.4 22 163-184 248-269 (629)
387 KOG0742 AAA+-type ATPase [Post 54.6 3.6E+02 0.0078 30.4 21.4 37 149-185 92-128 (630)
388 PF07889 DUF1664: Protein of u 54.5 1.8E+02 0.0039 26.9 11.8 58 224-281 66-123 (126)
389 PRK10698 phage shock protein P 54.2 2.3E+02 0.0051 28.1 14.6 20 154-173 28-47 (222)
390 PF07851 TMPIT: TMPIT-like pro 54.2 1.7E+02 0.0036 31.3 11.7 26 160-185 7-32 (330)
391 PF06120 Phage_HK97_TLTM: Tail 54.1 2.5E+02 0.0054 29.7 12.8 28 155-182 86-113 (301)
392 TIGR03545 conserved hypothetic 54.0 1.9E+02 0.0041 32.9 12.8 14 172-185 192-205 (555)
393 PF09403 FadA: Adhesion protei 53.8 1.2E+02 0.0026 28.1 9.3 13 196-208 32-44 (126)
394 PF05615 THOC7: Tho complex su 53.4 1.8E+02 0.0038 26.5 11.0 68 160-233 42-109 (139)
395 PF11684 DUF3280: Protein of u 53.4 11 0.00023 35.3 2.5 28 420-447 110-137 (140)
396 COG4717 Uncharacterized conser 53.4 4.2E+02 0.009 32.1 15.4 64 292-358 804-880 (984)
397 TIGR01010 BexC_CtrB_KpsE polys 53.2 2.3E+02 0.005 29.6 12.6 121 154-274 174-305 (362)
398 KOG1103 Predicted coiled-coil 52.9 1.7E+02 0.0036 31.9 11.3 28 126-153 57-85 (561)
399 PF07926 TPR_MLP1_2: TPR/MLP1/ 52.9 1.8E+02 0.0039 26.4 17.0 70 200-272 61-130 (132)
400 KOG2129 Uncharacterized conser 52.8 3.7E+02 0.008 30.0 17.5 13 312-324 286-298 (552)
401 PLN02372 violaxanthin de-epoxi 52.8 1.9E+02 0.0042 31.9 12.0 24 230-253 407-430 (455)
402 PF07303 Occludin_ELL: Occludi 52.8 85 0.0018 27.7 7.9 47 206-253 23-69 (101)
403 PF12761 End3: Actin cytoskele 52.8 1E+02 0.0023 30.5 9.3 33 249-281 162-194 (195)
404 TIGR02971 heterocyst_DevB ABC 52.6 2.7E+02 0.0058 28.3 14.7 40 260-308 185-224 (327)
405 PRK05689 fliJ flagellar biosyn 52.6 1.8E+02 0.0039 26.4 15.4 55 200-254 73-127 (147)
406 KOG2991 Splicing regulator [RN 52.5 3E+02 0.0065 28.8 17.3 23 256-278 179-201 (330)
407 KOG2264 Exostosin EXT1L [Signa 52.4 1.3E+02 0.0028 34.6 10.9 42 198-239 93-134 (907)
408 PF05377 FlaC_arch: Flagella a 52.3 64 0.0014 25.9 6.3 37 202-238 4-40 (55)
409 PF06785 UPF0242: Uncharacteri 52.1 3.4E+02 0.0074 29.4 15.5 27 212-238 141-167 (401)
410 KOG0249 LAR-interacting protei 52.0 4.8E+02 0.01 31.1 15.4 17 162-178 117-133 (916)
411 PLN02320 seryl-tRNA synthetase 51.9 1.1E+02 0.0024 34.4 10.4 30 377-418 353-382 (502)
412 KOG4603 TBP-1 interacting prot 51.6 2.5E+02 0.0054 27.7 11.7 90 198-289 79-178 (201)
413 PF04977 DivIC: Septum formati 51.3 48 0.001 26.6 5.8 29 203-231 22-50 (80)
414 PF14723 SSFA2_C: Sperm-specif 51.1 1.3E+02 0.0028 29.5 9.4 20 165-184 106-125 (179)
415 TIGR01730 RND_mfp RND family e 51.0 98 0.0021 30.8 9.2 17 265-281 113-129 (322)
416 KOG3850 Predicted membrane pro 50.9 3.8E+02 0.0082 29.6 13.9 20 319-338 393-412 (455)
417 KOG4593 Mitotic checkpoint pro 50.8 4.8E+02 0.01 30.7 15.8 117 159-275 421-538 (716)
418 PF10267 Tmemb_cc2: Predicted 50.4 3.2E+02 0.0069 29.9 13.3 19 319-337 344-362 (395)
419 PF12126 DUF3583: Protein of u 50.3 3.4E+02 0.0073 28.9 12.8 36 203-238 51-87 (324)
420 PF08286 Spc24: Spc24 subunit 49.8 5.8 0.00013 35.5 0.2 41 202-242 3-43 (118)
421 COG3883 Uncharacterized protei 49.6 3.2E+02 0.007 28.4 19.8 28 159-186 33-60 (265)
422 KOG2196 Nuclear porin [Nuclear 49.5 3.2E+02 0.0069 28.3 15.5 29 256-284 221-249 (254)
423 PF00170 bZIP_1: bZIP transcri 49.4 94 0.002 24.6 7.1 31 208-238 29-59 (64)
424 PF13166 AAA_13: AAA domain 49.4 4.4E+02 0.0096 29.9 18.2 10 160-169 332-341 (712)
425 PRK09343 prefoldin subunit bet 49.2 2E+02 0.0044 25.9 10.8 15 264-278 95-109 (121)
426 PF14992 TMCO5: TMCO5 family 49.2 3.1E+02 0.0067 28.8 12.4 63 212-274 116-180 (280)
427 KOG0978 E3 ubiquitin ligase in 49.1 5.1E+02 0.011 30.5 17.6 82 204-285 544-625 (698)
428 smart00338 BRLZ basic region l 49.0 71 0.0015 25.3 6.3 30 209-238 30-59 (65)
429 PRK10636 putative ABC transpor 49.0 1E+02 0.0022 35.2 9.8 25 198-222 563-587 (638)
430 PF01519 DUF16: Protein of unk 48.9 1.8E+02 0.004 26.1 9.3 28 209-236 50-77 (102)
431 KOG0018 Structural maintenance 48.9 4.5E+02 0.0097 32.5 15.0 30 154-183 729-763 (1141)
432 KOG4787 Uncharacterized conser 48.6 1.5E+02 0.0033 34.2 10.7 72 160-232 462-542 (852)
433 KOG3859 Septins (P-loop GTPase 48.5 1.7E+02 0.0038 31.1 10.5 18 45-62 53-71 (406)
434 PF15372 DUF4600: Domain of un 48.4 2.3E+02 0.0051 26.4 12.4 39 208-249 54-92 (129)
435 PF13747 DUF4164: Domain of un 48.1 1.8E+02 0.004 25.1 11.7 27 196-222 37-63 (89)
436 KOG3595 Dyneins, heavy chain [ 47.4 5.6E+02 0.012 32.4 16.4 29 156-184 699-727 (1395)
437 COG4985 ABC-type phosphate tra 47.3 1.5E+02 0.0032 30.6 9.5 25 210-234 219-243 (289)
438 PF02388 FemAB: FemAB family; 47.2 1.2E+02 0.0027 32.5 9.8 16 169-184 213-228 (406)
439 KOG4438 Centromere-associated 47.2 3.7E+02 0.0081 29.8 13.1 63 221-283 175-238 (446)
440 KOG0239 Kinesin (KAR3 subfamil 47.0 1.7E+02 0.0038 34.0 11.3 33 199-231 176-208 (670)
441 cd07611 BAR_Amphiphysin_I_II T 47.0 3.1E+02 0.0068 27.5 14.4 107 153-259 75-205 (211)
442 PRK10246 exonuclease subunit S 46.9 6.2E+02 0.013 30.9 17.4 122 155-281 182-331 (1047)
443 PRK11578 macrolide transporter 46.5 2.8E+02 0.0061 28.9 12.1 26 256-281 160-185 (370)
444 PF14362 DUF4407: Domain of un 46.4 2.2E+02 0.0048 29.0 11.0 6 321-326 261-266 (301)
445 PF04977 DivIC: Septum formati 46.4 42 0.0009 26.9 4.7 31 208-238 20-50 (80)
446 PRK14160 heat shock protein Gr 46.0 3.2E+02 0.007 27.4 12.1 44 211-254 53-96 (211)
447 PF15294 Leu_zip: Leucine zipp 45.6 3.8E+02 0.0083 28.1 13.2 28 160-187 128-155 (278)
448 PRK11281 hypothetical protein; 45.3 2.3E+02 0.005 35.0 12.4 78 210-287 126-211 (1113)
449 PF03245 Phage_lysis: Bacterio 45.0 1.7E+02 0.0037 26.6 8.9 40 220-259 15-54 (125)
450 TIGR01554 major_cap_HK97 phage 44.9 2.3E+02 0.0049 29.9 11.1 81 159-252 1-92 (378)
451 KOG0240 Kinesin (SMY1 subfamil 44.8 5.5E+02 0.012 29.7 14.7 34 197-230 420-453 (607)
452 PF04799 Fzo_mitofusin: fzo-li 44.7 2.1E+02 0.0045 28.0 9.8 19 223-241 124-142 (171)
453 KOG0163 Myosin class VI heavy 44.5 5.8E+02 0.013 30.8 14.6 9 410-418 1151-1159(1259)
454 KOG4796 RNA polymerase II elon 44.4 2.1E+02 0.0045 32.7 10.9 46 210-255 520-566 (604)
455 KOG2891 Surface glycoprotein [ 44.4 4.1E+02 0.009 28.1 12.9 18 135-152 180-197 (445)
456 PRK10361 DNA recombination pro 44.0 5.1E+02 0.011 29.1 14.0 30 230-259 96-125 (475)
457 PF10458 Val_tRNA-synt_C: Valy 43.9 1.4E+02 0.0029 24.1 7.2 22 163-184 3-24 (66)
458 PF07407 Seadorna_VP6: Seadorn 43.9 1.1E+02 0.0025 32.7 8.5 14 376-389 242-255 (420)
459 PF05622 HOOK: HOOK protein; 43.6 7.8 0.00017 44.5 0.0 26 256-281 393-418 (713)
460 TIGR03545 conserved hypothetic 43.4 4.4E+02 0.0095 30.1 13.6 25 420-444 497-521 (555)
461 KOG3501 Molecular chaperone Pr 43.4 2.6E+02 0.0056 25.5 11.6 75 156-238 33-107 (114)
462 PF07352 Phage_Mu_Gam: Bacteri 43.3 1.6E+02 0.0036 27.2 8.7 14 294-308 72-85 (149)
463 PLN02678 seryl-tRNA synthetase 43.2 1.9E+02 0.0041 32.1 10.4 25 381-417 301-325 (448)
464 COG0172 SerS Seryl-tRNA synthe 42.9 3.2E+02 0.0068 30.3 12.0 92 197-296 28-119 (429)
465 PF06810 Phage_GP20: Phage min 42.4 1.9E+02 0.004 27.4 9.0 68 159-236 15-86 (155)
466 COG1842 PspA Phage shock prote 42.4 3.7E+02 0.0081 27.1 17.5 130 130-276 1-149 (225)
467 KOG2129 Uncharacterized conser 42.3 5.3E+02 0.012 28.8 16.8 25 46-71 18-42 (552)
468 PF04518 Effector_1: Effector 42.1 1.9E+02 0.0042 31.4 10.1 91 197-294 199-294 (379)
469 PRK05431 seryl-tRNA synthetase 42.0 2E+02 0.0043 31.3 10.4 28 379-418 292-319 (425)
470 PF07195 FliD_C: Flagellar hoo 42.0 87 0.0019 31.0 7.1 45 210-257 191-235 (239)
471 PF05557 MAD: Mitotic checkpoi 41.9 8.5 0.00018 44.2 0.0 21 162-182 310-330 (722)
472 PF10205 KLRAQ: Predicted coil 41.8 2.6E+02 0.0057 25.1 11.5 30 201-230 8-37 (102)
473 TIGR00293 prefoldin, archaeal 41.7 2.5E+02 0.0054 24.8 11.4 26 159-184 15-40 (126)
474 PF07462 MSP1_C: Merozoite sur 41.6 1.7E+02 0.0036 33.4 9.7 86 237-332 65-156 (574)
475 PF01486 K-box: K-box region; 41.5 2.3E+02 0.005 24.4 11.0 29 159-187 14-42 (100)
476 PF12018 DUF3508: Domain of un 41.4 4.1E+02 0.009 27.3 12.5 30 156-185 8-37 (281)
477 PF13815 Dzip-like_N: Iguana/D 41.0 87 0.0019 28.0 6.3 22 210-231 92-113 (118)
478 PF04899 MbeD_MobD: MbeD/MobD 40.9 2.2E+02 0.0047 23.9 9.5 36 247-282 28-63 (70)
479 PF15188 CCDC-167: Coiled-coil 40.9 1.5E+02 0.0032 25.8 7.4 24 163-186 4-27 (85)
480 cd07673 F-BAR_FCHO2 The F-BAR 40.6 4.2E+02 0.009 27.1 16.9 17 301-317 251-267 (269)
481 PF15254 CCDC14: Coiled-coil d 40.5 7.2E+02 0.016 29.8 18.6 83 203-285 439-525 (861)
482 COG4467 Regulator of replicati 40.5 55 0.0012 29.7 4.8 15 285-300 82-96 (114)
483 PF11068 YlqD: YlqD protein; 40.5 3.1E+02 0.0066 25.5 11.1 26 210-235 25-50 (131)
484 PF03148 Tektin: Tektin family 40.4 4.2E+02 0.009 28.5 12.4 30 155-184 256-285 (384)
485 PF05008 V-SNARE: Vesicle tran 40.2 1.9E+02 0.0041 23.5 7.8 58 208-271 21-78 (79)
486 PRK12765 flagellar capping pro 40.1 1.4E+02 0.0029 34.2 9.1 64 203-276 530-593 (595)
487 KOG3647 Predicted coiled-coil 40.1 4.7E+02 0.01 27.6 13.1 90 193-282 107-196 (338)
488 PF14282 FlxA: FlxA-like prote 40.0 2.6E+02 0.0057 24.6 9.7 63 163-227 18-80 (106)
489 PF07851 TMPIT: TMPIT-like pro 40.0 3.3E+02 0.0072 29.1 11.3 73 209-281 1-81 (330)
490 PF05010 TACC: Transforming ac 39.6 4E+02 0.0087 26.6 17.9 118 160-283 65-183 (207)
491 PRK07720 fliJ flagellar biosyn 39.5 3E+02 0.0064 25.1 15.4 108 155-262 28-135 (146)
492 PRK10476 multidrug resistance 39.4 4.5E+02 0.0098 27.2 14.2 92 191-282 79-180 (346)
493 KOG2412 Nuclear-export-signal 39.2 4.5E+02 0.0099 30.1 12.5 88 152-244 185-273 (591)
494 TIGR00414 serS seryl-tRNA synt 39.1 1.5E+02 0.0033 32.2 8.9 62 195-256 41-106 (418)
495 PF12072 DUF3552: Domain of un 39.1 3.7E+02 0.0081 26.1 14.1 88 194-284 60-147 (201)
496 PF07407 Seadorna_VP6: Seadorn 39.1 1.8E+02 0.0038 31.4 8.9 79 197-275 31-114 (420)
497 PF12329 TMF_DNA_bd: TATA elem 39.0 2.3E+02 0.005 23.6 10.7 71 195-265 2-72 (74)
498 PF08581 Tup_N: Tup N-terminal 39.0 2.5E+02 0.0053 24.0 11.7 68 158-241 5-72 (79)
499 KOG4593 Mitotic checkpoint pro 38.5 7.3E+02 0.016 29.3 17.1 136 152-287 139-277 (716)
500 PHA03161 hypothetical protein; 38.5 1.1E+02 0.0024 29.2 6.8 87 211-313 53-146 (150)
No 1
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-104 Score=813.62 Aligned_cols=416 Identities=52% Similarity=0.866 Sum_probs=377.0
Q ss_pred ccccccccccccccccccccccCcccccCCCCC-CCCCCCCCCCCCCCCcccccCCCCCCCceEEEecCCCCCCCCCCCC
Q 010914 30 QLAMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHI 108 (497)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~d~s~~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~eS~v~l~~~~~~~~~~~~~~ 108 (497)
.+.-...++|+..++.++.+||.+++|+|.+.+ |..+.|+++++++. ++.. ++.++.++||+.+......+....+-
T Consensus 17 ~~~r~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~~~~~~~p~r~~~~~~~ 94 (447)
T KOG2751|consen 17 PCQRCLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSVVVYFSPPVRDSDTEHN 94 (447)
T ss_pred hhhhccchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccceecccCcccccccccc
Confidence 344456789999999999999999999998865 88888999988876 4443 68888999999988766544333333
Q ss_pred CCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010914 109 PPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR 188 (497)
Q Consensus 109 ~~~~~~~~~~~~~~~~~ls~~i~~l~~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~ 188 (497)
.....+..+....+.+++++++++++++|+|+|+|++||||+|.||++.|++.|+++++.+++|+++|++|+++|+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~ 174 (447)
T KOG2751|consen 95 LSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQ 174 (447)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 33333333445667789999999999999999999999999999999999999999999999999999999999998764
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010914 189 DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 268 (497)
Q Consensus 189 ~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~ 268 (497)
+ .+++++.+|+++++.||++|.++|++++++.++++.++.+++.+..++.++|.+||++||.+++++.+++++++||++
T Consensus 175 ~-~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~ 253 (447)
T KOG2751|consen 175 D-VSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEA 253 (447)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 3 478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeee
Q 010914 269 KIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKII 348 (497)
Q Consensus 269 q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~kf~y~YkLv 348 (497)
|+++++.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||+||||++|++++|++|. +|+||
T Consensus 254 q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~-~y~lv 332 (447)
T KOG2751|consen 254 QIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFV-RYRLV 332 (447)
T ss_pred HHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccc-eeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ecCCCceeeecCC---ceeecc--cCCCCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCccc
Q 010914 349 PMGSYPRIMDSNN---NTYELF--GPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVE 423 (497)
Q Consensus 349 PmGS~SkI~~~~~---~~~eLy--g~~~lf~~~kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~kdkIg 423 (497)
||||+|+|+.... ..+++| |+.+|||++|||+||+|||+||+||++++++++ +.+.+||.|++|+|+
T Consensus 333 p~GshSyI~~~~~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~--------~~~~lPy~ie~d~i~ 404 (447)
T KOG2751|consen 333 PMGSHSYIKKRMVNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKD--------TSFNLPYDIEKDKLN 404 (447)
T ss_pred cccchhHHHHhccCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcC--------cccCCcchhhccccc
Confidence 9999999987543 456777 445899999999999999999999999999876 469999999999999
Q ss_pred ee----eEEecCCCCchhhHHHHHHHhhHHHHHHHHhh
Q 010914 424 NY----SITQSFNKQENWTKALKYTLCNLKWALFWFVG 457 (497)
Q Consensus 424 g~----SIkl~~n~~e~WTkAlK~lLtNlKWlLaw~~~ 457 (497)
|. +|++.||++++||+||||||||+||++|||+.
T Consensus 405 d~~~~y~i~~~fN~De~WTrALkFmLTnlK~~~A~vss 442 (447)
T KOG2751|consen 405 DPSSSYSIKVQFNSDENWTRALKFMLTNLKWLLAWVSS 442 (447)
T ss_pred CCccceeEEeeecchHHHHHHHHHHHhccHHHHHHHhh
Confidence 86 59999999999999999999999999999984
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=100.00 E-value=2.3e-97 Score=753.29 Aligned_cols=304 Identities=46% Similarity=0.854 Sum_probs=223.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 149 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 228 (497)
Q Consensus 149 PLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El 228 (497)
|||+||++.|+++|+++++++++|+++|..||++++.+.....+.+++.+++.++++||+++.++|++||++++++++|+
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853321123466788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 010914 229 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 308 (497)
Q Consensus 229 ~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGr 308 (497)
.+++.+.++++++|.+||+++|.+++++.+++++++++++||++++++|++|+||||||++|||||||+|||||||||||
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceeeecC----CceeecccCC-----CCccccchh
Q 010914 309 LPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSN----NNTYELFGPV-----NLFWSTRYD 379 (497)
Q Consensus 309 lp~~~V~W~EINAAwGQ~~LLL~tla~~l~~kf~y~YkLvPmGS~SkI~~~~----~~~~eLyg~~-----~lf~~~kFD 379 (497)
+|++||+|+||||||||+||||++||++++++|+ +|+|+||||+|+|++.. +.+|+|||++ ++|++++||
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~-~y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd 239 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQ-RYRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFD 239 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHHHCT---S-SEEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-cceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchH
Confidence 9999999999999999999999999999999999 99999999999999875 5789999876 469999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCccceeeEEecCCCCchhhHHHHHHHhhHHHHHHHHhhCC
Q 010914 380 KAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT 459 (497)
Q Consensus 380 ~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~kdkIgg~SIkl~~n~~e~WTkAlK~lLtNlKWlLaw~~~~t 459 (497)
.||+|||+||+||++|+.+.|+. .++|||+|++|||||.||+++||++++||+||||||||+||+++|++.++
T Consensus 240 ~am~~~L~~~~q~~~~~~~~~~~-------~~~lPy~i~~~~I~~~si~~~~~~~~~WT~AlK~lLtnlKw~l~~~s~~~ 312 (314)
T PF04111_consen 240 KAMVAFLDCLQQLAEFVEKRDPQ-------SFELPYKIDKDKIGGVSIKLQFNSEEEWTKALKYLLTNLKWLLAWVSSQL 312 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------SS-ECTTEECTCES-STTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-------ccccceeccCCccCCeeeeecCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987742 69999999999999999999999999999999999999999999999875
Q ss_pred c
Q 010914 460 N 460 (497)
Q Consensus 460 ~ 460 (497)
.
T Consensus 313 ~ 313 (314)
T PF04111_consen 313 S 313 (314)
T ss_dssp -
T ss_pred c
Confidence 4
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=99.43 E-value=7.7e-11 Score=116.54 Aligned_cols=244 Identities=18% Similarity=0.216 Sum_probs=138.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 148 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR--DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 225 (497)
Q Consensus 148 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~--~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 225 (497)
..+|..|+..=+-.++.++.++..+.+....-++.+-.... .......+..+...++..-..+..+++.+.++.++..
T Consensus 11 ~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 11 RFYCANCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKR 90 (302)
T ss_pred CeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44899999998888999999999999888876654322100 0001122223333334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCceeeee---------
Q 010914 226 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL--LKRTNVLNDAFPIWH--------- 294 (497)
Q Consensus 226 ~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk--L~ktNV~Nd~F~I~h--------- 294 (497)
+++.++..+.......-..+.........++....++....+.++.....++.. -....-++..|+|..
T Consensus 91 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~~ 170 (302)
T PF10186_consen 91 ERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRRPSD 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecccccCCC
Confidence 444444333332221111222222222333333333333333333332222221 112223456899932
Q ss_pred --cCCeeeeccccCCCCCC-CCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceeeec---CCceeeccc
Q 010914 295 --DGEFGTINNFRLGRLPK-IPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS---NNNTYELFG 368 (497)
Q Consensus 295 --dG~fGTINGlRLGrlp~-~~V~W~EINAAwGQ~~LLL~tla~~l~~kf~y~YkLvPmGS~SkI~~~---~~~~~eLyg 368 (497)
.+.|. |.|+.|=...+ ...+=.+|+||+|+++.|+..+|.+|++.. .|.+.|+||+|.|.+. ...+++.+.
T Consensus 171 ~~~~~~~-I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~yL~v~L--py~i~~~gs~s~i~d~~~~~~~~~~~~~ 247 (302)
T PF10186_consen 171 SSSSEYT-ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSRYLGVPL--PYPITPSGSRSTIIDFSPSIDRPLPSLS 247 (302)
T ss_pred CCCCCee-ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCcccCccccchhhcccccCCcchhhh
Confidence 35665 99988765432 345668999999999999999999998877 5999999999999771 111222111
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHH
Q 010914 369 PVNLFWSTRYDKAMTLFLSCLKDFAE 394 (497)
Q Consensus 369 ~~~lf~~~kFD~AM~afL~cl~q~~e 394 (497)
..+--...+|..|+..+-.-+.|++.
T Consensus 248 ~~~~~~~~~f~~~v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 248 YESGVDRQRFEYAVFLLNKNIAQLCF 273 (302)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 11111246899999999998888875
No 4
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=99.10 E-value=3.8e-10 Score=118.62 Aligned_cols=332 Identities=14% Similarity=0.078 Sum_probs=191.1
Q ss_pred ccccccccCcccccCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010914 44 VLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNN 123 (497)
Q Consensus 44 ~~~~~~~d~s~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eS~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (497)
-+|..+.|+|+...+.+.....-+|+-.+..+.+..+..++.. .++. + ++.+ ..
T Consensus 21 ~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~-------------~~~~------~------~~~~-~~ 74 (447)
T KOG2751|consen 21 CLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGAS-------------SGDA------T------SGKT-PQ 74 (447)
T ss_pred ccchhhhhhhhccccccchhhccCCCCCCccccCCCccCcccc-------------Cccc------c------CCcc-hh
Confidence 3456677777777777766666666655544332222211100 0110 0 1111 12
Q ss_pred CcchhhHHHHHHHHHhhcCCCccCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHH----------HHHHHH----hcccc
Q 010914 124 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIE-AYE----------ACLQRL----EGEAR 188 (497)
Q Consensus 124 ~~ls~~i~~l~~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d-~Y~----------~fL~~L----~~~~~ 188 (497)
...+....+-...|+-.++++.+|||.|..|...+...+-+ +.-+.+.-+ .|. .|.+.| .++..
T Consensus 75 ~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~ 153 (447)
T KOG2751|consen 75 ESSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSAT-INVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVE 153 (447)
T ss_pred hccceecccCcccccccccccccccccccchhhhhHHHHHH-HHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHH
Confidence 33555556666778899999999999999999987764433 333222221 111 122111 11110
Q ss_pred cCCCHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010914 189 DVLSEAD-FLKEKLKIEE-----EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE 262 (497)
Q Consensus 189 ~~~~ee~-l~~e~~~Le~-----EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee 262 (497)
....+-+ .++-++.||+ ++..+..|++++..|.+++-+++++++++...++.++.+.- .
T Consensus 154 ~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~-------~-------- 218 (447)
T KOG2751|consen 154 DAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELE-------F-------- 218 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--------
Confidence 0000000 0111122221 44556666666666666666666666665555554432111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCcee------eeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 010914 263 RDAISSKIEVSQAHLELLKRTNVLNDAFP------IWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 336 (497)
Q Consensus 263 ~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~------I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~ 336 (497)
.-.+...+.++|.+-|. |-|+|...+|++.|.|+++...+-|.+++++||-.+.+.-.++.+
T Consensus 219 ------------~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtI 286 (447)
T KOG2751|consen 219 ------------KAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTI 286 (447)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeeccccccc
Confidence 11222222333333332 567899999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeeeecCCCceeeecC----------------Cceeec--ccCCCCccccchhHHHHHHHHHHHHHHHHHhc
Q 010914 337 FRPKFPYRIKIIPMGSYPRIMDSN----------------NNTYEL--FGPVNLFWSTRYDKAMTLFLSCLKDFAEFANS 398 (497)
Q Consensus 337 l~~kf~y~YkLvPmGS~SkI~~~~----------------~~~~eL--yg~~~lf~~~kFD~AM~afL~cl~q~~e~~~~ 398 (497)
.|+... +|..+|.|..+-+.... -..|.| ||+.. |++.
T Consensus 287 N~FRLG-~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshS-----------------------yI~~ 342 (447)
T KOG2751|consen 287 NNFRLG-RLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHS-----------------------YIKK 342 (447)
T ss_pred ccceec-cccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchh-----------------------HHHH
Confidence 977777 88899988766554321 112222 23222 3333
Q ss_pred cCCCCCCCCCCCCCCceeeeCCccceeeEEecCCCCchhhHHHHHHHhhHHHHHHHHh-hCCccCCcccc
Q 010914 399 KDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFV-GNTNFQPVSAM 467 (497)
Q Consensus 399 ~d~~~~~~~~~~~~LPY~I~kdkIgg~SIkl~~n~~e~WTkAlK~lLtNlKWlLaw~~-~~t~~~~~~~~ 467 (497)
++ ..+||.-..=--||..+... -..-+||.-.|-.|+.+.-++. +.++|.++-.+
T Consensus 343 ~~----------~~~~~el~l~~sgg~~~f~~----tkfD~amvafLd~L~qf~~e~~~k~~~~~lPy~i 398 (447)
T KOG2751|consen 343 RM----------VNLPYELPLFQSGGLKFFWS----TKFDKAMVAFLDCLKQFADELEKKDTSFNLPYDI 398 (447)
T ss_pred hc----------cCCCccchhhcCCCceeeec----cccCHHHHHHHHHHHHHHHHHHhcCcccCCcchh
Confidence 22 13666555444456666542 2566899999999999998887 77888876666
No 5
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=98.57 E-value=1.2e-05 Score=84.02 Aligned_cols=150 Identities=19% Similarity=0.252 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CceeeeecC-Ce-------
Q 010914 230 ELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN---DAFPIWHDG-EF------- 298 (497)
Q Consensus 230 ~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~N---d~F~I~hdG-~f------- 298 (497)
.++.-...|+..+.++-...-.++.+..++.+.+-++ ...++++.-- ++|.|..+| +.
T Consensus 135 ~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l-----------~a~re~fL~~~~~~~~~irq~~~~~s~i~~l~ 203 (377)
T KOG2896|consen 135 HLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNEL-----------VAKRELFLEQRIQDTFKIRQDGSPLSKILPLQ 203 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHhhHhHHHhhhhhhhccCcchheeecCC
Confidence 3333444445555555555555555554444444444 3344444332 678887776 22
Q ss_pred -------eeeccccCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceeeecCCc------ee
Q 010914 299 -------GTINNFRLGRLPKIPV-EWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNN------TY 364 (497)
Q Consensus 299 -------GTINGlRLGrlp~~~V-~W~EINAAwGQ~~LLL~tla~~l~~kf~y~YkLvPmGS~SkI~~~~~~------~~ 364 (497)
-||-|++|--.++..- +=.|+-||+|.++.|+++||.+|.+.. +|.|++.||.|+|.|.-+. .+
T Consensus 204 ~~~~~~v~tIrGl~lp~~~d~~~~s~~~~aaALGylaHLv~~Is~~L~~pL--RYPIl~~~Sks~I~D~i~~~~~ttr~f 281 (377)
T KOG2896|consen 204 FSYCHLVFTIRGLKLPFIEDKQNKSEQETAAALGYLAHLVSMISKYLEVPL--RYPILLAGSKSYIRDYIPDIETTTREF 281 (377)
T ss_pred cccchhhhhhhcccCCchhhhhccchHHHHHHHHHHHHHHHHHHHHhcccc--ccccccccccceecccCCccccccccc
Confidence 3677777665544222 356899999999999999999996655 7999999999999875321 15
Q ss_pred ecccCCCCccccchhHHHHHHHHHHHHHHH
Q 010914 365 ELFGPVNLFWSTRYDKAMTLFLSCLKDFAE 394 (497)
Q Consensus 365 eLyg~~~lf~~~kFD~AM~afL~cl~q~~e 394 (497)
++|.-.. -..+|+.||-.+-.=+.|+..
T Consensus 282 ply~k~~--~~e~f~~glylL~qNiaqlr~ 309 (377)
T KOG2896|consen 282 PLYTKSQ--EIEQFEYGLYLLNQNIAQLRY 309 (377)
T ss_pred cCccccc--hHHHHHHHHHHHhccHHHHHH
Confidence 5552111 034688887766666666654
No 6
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.42 E-value=0.044 Score=56.89 Aligned_cols=213 Identities=21% Similarity=0.274 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 170 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 249 (497)
Q Consensus 170 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~ 249 (497)
..+.+.+..-++.++.+ ++++.+|+.+||.|..++.++|.+++.+.++++++......+...++.+-.++-.+.
T Consensus 42 ~~~~~~~~~el~~le~E------e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQE------EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp HH--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666543 356778888899999999999999999888888777776666666665555555556
Q ss_pred hHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHH----HHHH-hhcccCCCc
Q 010914 250 NNFQFQLIAHQEERDAIS-----------------------------------SKIEVSQAH----LELL-KRTNVLNDA 289 (497)
Q Consensus 250 n~~q~ql~~~~ee~~sl~-----------------------------------~q~~~~~~q----LdkL-~ktNV~Nd~ 289 (497)
..++.++....++++.|. +.+..|--| |..| ++.|+=-..
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 666666555555555442 112222222 2222 344443345
Q ss_pred eeeeecCCeeeeccccCCC-------CCC------CCCChHHHHHHHHHHHHHHHHHHhhcC---C-CCCCceeeeecCC
Q 010914 290 FPIWHDGEFGTINNFRLGR-------LPK------IPVEWDEINAAWGQACLLLHTMCQYFR---P-KFPYRIKIIPMGS 352 (497)
Q Consensus 290 F~I~hdG~fGTINGlRLGr-------lp~------~~V~W~EINAAwGQ~~LLL~tla~~l~---~-kf~y~YkLvPmGS 352 (497)
|.|---|.|.+|--+.-+. ..+ ..-.+...|.|+--.+-+|.-++..+. . .|.+-|++.
T Consensus 196 y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~---- 271 (314)
T PF04111_consen 196 YRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFVEKRDPQSFELPYKID---- 271 (314)
T ss_dssp EEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHHHHHHH-----SS-EC----
T ss_pred ceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHHHhcCCcccccceecc----
Confidence 6666667666665554211 011 124688999999888888887777653 1 233335442
Q ss_pred CceeeecCCceeecccCCCCccccchhHHHHHHHHHHHHHHHHHhcc
Q 010914 353 YPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSK 399 (497)
Q Consensus 353 ~SkI~~~~~~~~eLyg~~~lf~~~kFD~AM~afL~cl~q~~e~~~~~ 399 (497)
--+|-+ .++-+. +-...++-+||.-+|..++-+-.|+.++
T Consensus 272 ~~~I~~---~si~~~----~~~~~~WT~AlK~lLtnlKw~l~~~s~~ 311 (314)
T PF04111_consen 272 KDKIGG---VSIKLQ----FNSEEEWTKALKYLLTNLKWLLAWVSSQ 311 (314)
T ss_dssp TTEECT---CES-ST----TS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCC---eeeeec----CCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334422 222111 1124588999999999999999988754
No 7
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.90 E-value=0.04 Score=55.43 Aligned_cols=126 Identities=20% Similarity=0.240 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 010914 157 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL--EL 233 (497)
Q Consensus 157 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~-~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l--e~ 233 (497)
..++.+|.+.+.....++.|..+|++++.+.... -.-+++..+++.++.+-..+..+|.++....+..+..+... +.
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~ 89 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 3577899999999999999999999887543210 00123333444444444444444444444444443333222 23
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 234 KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 234 e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
+..+|+.+....-+..+++..++..+.+++..+..++...+..+.++++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555666666666666666666665555555555443
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.83 E-value=0.064 Score=63.08 Aligned_cols=132 Identities=19% Similarity=0.250 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC--------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 010914 153 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS--------EADFLKEKLKIEEEE-RKLEAAIEETEKQNAE 223 (497)
Q Consensus 153 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~--------ee~l~~e~~~Le~EE-~~L~~eL~~LE~e~~~ 223 (497)
+|...=.+..|.+++.+.+..+.|.+-...++.+..+..+ .+.+.+.+..++++. ..+..++.+.|.+.+.
T Consensus 326 ~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~ 405 (1074)
T KOG0250|consen 326 GELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQ 405 (1074)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444444455555555555555555544444322211100 011233444455555 5566677777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010914 224 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 284 (497)
Q Consensus 224 l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktN 284 (497)
|..|.++++.....|.++++.+-.++..-+-++...+.+...+..++++.+.+|..|++++
T Consensus 406 L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 406 LKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888877777887777777777777777777777888888899999999999999875
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.05 E-value=0.19 Score=58.73 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 212 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 279 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 279 (497)
.++.+++.+...+..++..++.+...+...-..++...+.++.++..+.+++..+..++.......+.
T Consensus 434 ~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~ 501 (1164)
T TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444445444544445566666666666666555555555555444444333
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.82 E-value=0.55 Score=44.50 Aligned_cols=97 Identities=21% Similarity=0.326 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
.+..+++++++.++...+...++..++... ....+.++..+++...+....+.+.++..++.+++.+.+.+...
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~ 162 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDL------QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQE 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555443321 11122333344444445555555555555555444455555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 010914 238 FKELEERYWQEFNNFQFQLIAHQ 260 (497)
Q Consensus 238 L~~eE~~~w~e~n~~q~ql~~~~ 260 (497)
+...-++.+.+++.++..+.+.+
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444455555555554444433
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=95.75 E-value=0.5 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=11.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 010914 244 RYWQEFNNFQFQLIAHQEERDAI 266 (497)
Q Consensus 244 ~~w~e~n~~q~ql~~~~ee~~sl 266 (497)
.++..++.++.++..++.+...+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l 326 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGI 326 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444433
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.67 E-value=0.55 Score=55.03 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=9.7
Q ss_pred ccchhHHHHHHHH
Q 010914 375 STRYDKAMTLFLS 387 (497)
Q Consensus 375 ~~kFD~AM~afL~ 387 (497)
..+|..|+.+.|.
T Consensus 534 ~~~y~~Aie~~lg 546 (1164)
T TIGR02169 534 GERYATAIEVAAG 546 (1164)
T ss_pred CHHHHHHHHHHhh
Confidence 4678888887775
No 13
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.63 E-value=1.1 Score=44.67 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=21.5
Q ss_pred HHHhhcccCCCceeeeecCCeeeeccccCCCC
Q 010914 278 ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 309 (497)
Q Consensus 278 dkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrl 309 (497)
+-=+...+|..+..| ||.=-+.+=|||||+
T Consensus 163 ~yg~~i~~~~~~i~~--dG~~~~V~~LrlGr~ 192 (251)
T PF11932_consen 163 EYGRTIEVYQGTITL--DGEERQVDFLRLGRV 192 (251)
T ss_pred HhCCceeEEEEEEeE--CCeEEEEEEEeecch
Confidence 333445566666555 898889999999996
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.60 E-value=0.4 Score=57.72 Aligned_cols=101 Identities=21% Similarity=0.327 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCceee
Q 010914 216 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL---NDAFPI 292 (497)
Q Consensus 216 ~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~---Nd~F~I 292 (497)
+++.+.++++.++..++.....+.+.-...|+++...+..+....++..++..++......... .+.. -.....
T Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~ 512 (1163)
T COG1196 436 ELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALES 512 (1163)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhc
Confidence 3334444444444445555555554445566666666666666666555555554444443332 0000 011112
Q ss_pred eecCCeeeeccccCCCCCCCCCChHH-HHHHHH
Q 010914 293 WHDGEFGTINNFRLGRLPKIPVEWDE-INAAWG 324 (497)
Q Consensus 293 ~hdG~fGTINGlRLGrlp~~~V~W~E-INAAwG 324 (497)
...|.||+ +|-+-.++..|.- |=+|+|
T Consensus 513 ~~~Gv~G~-----v~~li~v~~~y~~Aie~alG 540 (1163)
T COG1196 513 GLPGVYGP-----VAELIKVKEKYETALEAALG 540 (1163)
T ss_pred cCCCccch-----HHHhcCcChHHHHHHHHHcc
Confidence 23456664 3444445557766 666666
No 15
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.59 E-value=0.68 Score=54.55 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 151 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA-----RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 225 (497)
Q Consensus 151 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~-----~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 225 (497)
|..|+..| ..|+.+.+...++...|..+...+..-. ..-+.-.+...+...+.+.-.++.++++.++++...+.
T Consensus 197 ~~~~~~~l-~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~ 275 (1072)
T KOG0979|consen 197 LTTKTEKL-NRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIE 275 (1072)
T ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44455443 4466666666666666666544332110 00111122222333333444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010914 226 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE 262 (497)
Q Consensus 226 ~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee 262 (497)
.-.+.|+.+..++...=.+-|.++|.......+..++
T Consensus 276 ~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek 312 (1072)
T KOG0979|consen 276 DKKEELESEKKETRSKISQKQRELNEALAKVQEKFEK 312 (1072)
T ss_pred hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333344455555544444443333
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.59 E-value=0.3 Score=53.26 Aligned_cols=33 Identities=12% Similarity=0.442 Sum_probs=14.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 148 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 148 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 181 (497)
+..|.-|...+-+. ..++..++.+++.+..-++
T Consensus 284 ~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~ 316 (562)
T PHA02562 284 GGVCPTCTQQISEG-PDRITKIKDKLKELQHSLE 316 (562)
T ss_pred CCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHH
Confidence 55666665554333 3333333333333333333
No 17
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.50 E-value=0.85 Score=46.10 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ- 274 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~- 274 (497)
+..|+..++.....|..+|.++..+.+.+..++..+..+. ..+|..+-.....+........++..++..+.....
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~---~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL---ERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555554332 344444555555555555554444444444444333
Q ss_pred -------HHHHHHhhcccCCCceeeeecCCeeeeccccCCCC
Q 010914 275 -------AHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 309 (497)
Q Consensus 275 -------~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrl 309 (497)
...+++++.+ -+-..+.|+|=|=|..
T Consensus 171 ~l~~ell~~yeri~~~~---------kg~gvvpl~g~~C~GC 203 (239)
T COG1579 171 KLDPELLSEYERIRKNK---------KGVGVVPLEGRVCGGC 203 (239)
T ss_pred hcCHHHHHHHHHHHhcC---------CCceEEeecCCcccCC
Confidence 3345555532 1225677887776654
No 18
>PRK11637 AmiB activator; Provisional
Probab=95.31 E-value=0.38 Score=51.54 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
+.+++++++++++++....-++.++.+. .++.+++..++.+...+..+|.+++.+...++++|..++.++..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQR------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777666554432 2233444444444455555555555555555555555554444443
No 19
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.30 E-value=1.3 Score=46.28 Aligned_cols=158 Identities=11% Similarity=0.176 Sum_probs=79.4
Q ss_pred chhhHHHHHHHHHhhcCCCccCCcchH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 010914 126 FHSTITVLKRAFEIATSQTQVEQPLCL--------------ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL 191 (497)
Q Consensus 126 ls~~i~~l~~lFdIlSs~s~IDhPLC~--------------eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~ 191 (497)
|.|.+..-..+.-|.|+-.+-.- -+. .|...-++.|++++..++.|....+.-..+|..++....
T Consensus 116 LrHeL~~kdeLL~~ys~~~ee~~-~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E 194 (306)
T PF04849_consen 116 LRHELSMKDELLQIYSNDDEESE-PESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE 194 (306)
T ss_pred HHHHHHHHHHHHHhcCcHhhhcc-cccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 55555666667677764332111 122 223345788999999999999888887777765432110
Q ss_pred CH-----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHH
Q 010914 192 SE-----ADFLKEK-------LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW-------QEFNNF 252 (497)
Q Consensus 192 ~e-----e~l~~e~-------~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w-------~e~n~~ 252 (497)
.. .++.+++ ..|.+|..+...+...-+.|...|-.++.+++.+.+.+-.+-++.- ..-+.+
T Consensus 195 ekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 195 EKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL 274 (306)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 00 0111111 1222333333333333333333344444444433333322212222 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010914 253 QFQLIAHQEERDAISSKIEVSQAHLELLKRTN 284 (497)
Q Consensus 253 q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktN 284 (497)
+.++.++++.-....+-+.-++.+|..||+.|
T Consensus 275 ~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 275 QAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 44555555555555566667889999999876
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.10 E-value=1.3 Score=46.09 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.2
Q ss_pred CcchhhHHHHHHHHHhhcCCCccCCcchH
Q 010914 124 SGFHSTITVLKRAFEIATSQTQVEQPLCL 152 (497)
Q Consensus 124 ~~ls~~i~~l~~lFdIlSs~s~IDhPLC~ 152 (497)
+.|...|.--.++|.=+..++..+.|-+.
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf 106 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLF 106 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 45778888888899888888888888765
No 21
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.00 E-value=1.5 Score=51.21 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.3
Q ss_pred cchhHHHHHHH
Q 010914 376 TRYDKAMTLFL 386 (497)
Q Consensus 376 ~kFD~AM~afL 386 (497)
.+|+.|..+.+
T Consensus 533 ~~~~~a~~~~~ 543 (1179)
T TIGR02168 533 EGYEAAIEAAL 543 (1179)
T ss_pred hhHHHHHHHHH
Confidence 56666666543
No 22
>PRK11637 AmiB activator; Provisional
Probab=94.99 E-value=1.7 Score=46.61 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 267 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~ 267 (497)
+....++|..+..+++.+.++++..+.+++.+..+|+.+..+.=..+..++.++...+.++..+.
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~ 239 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR 239 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555544444433344444444333333333333
No 23
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.92 E-value=1.7 Score=50.81 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=12.2
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 010914 376 TRYDKAMTLFLSCLKDFAEF 395 (497)
Q Consensus 376 ~kFD~AM~afL~cl~q~~e~ 395 (497)
..|+..+.+|..+...|...
T Consensus 1025 ~~f~~~~~~F~~v~~~f~~~ 1044 (1179)
T TIGR02168 1025 EIDREARERFKDTFDQVNEN 1044 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666553
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.54 E-value=1.3 Score=52.76 Aligned_cols=118 Identities=19% Similarity=0.305 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 010914 215 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 294 (497)
Q Consensus 215 ~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~h 294 (497)
..+..+..+.+.+++.|+.+.+.++++..+.=.++|.++..+..-++++..++..+......++.-+
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~------------- 456 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS------------- 456 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3444555566666666666666666666677777777777777777777666666555554443322
Q ss_pred cCCeeeeccccCCCCCCCCCChHHHHHHHH-HHHHHHHHHHhhcCCCCCCceeeeecCCCceeeec
Q 010914 295 DGEFGTINNFRLGRLPKIPVEWDEINAAWG-QACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS 359 (497)
Q Consensus 295 dG~fGTINGlRLGrlp~~~V~W~EINAAwG-Q~~LLL~tla~~l~~kf~y~YkLvPmGS~SkI~~~ 359 (497)
-+|+.++=+.-.. +.|+| ++.-||.+|-+... .|+ +--.=|+|+|-++.+.
T Consensus 457 ----~~l~~lk~~k~dk--------vs~FG~~m~~lL~~I~r~~~-~f~-~~P~GPlG~~Vtl~~~ 508 (1074)
T KOG0250|consen 457 ----EELKDLKKTKTDK--------VSAFGPNMPQLLRAIERRKR-RFQ-TPPKGPLGKYVTLKEP 508 (1074)
T ss_pred ----HHHHHHHhcccch--------hhhcchhhHHHHHHHHHHHh-cCC-CCCCCCccceeEecCc
Confidence 1244444443211 22333 56778888876542 444 2224488898888664
No 25
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.46 E-value=1 Score=48.76 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=55.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 148 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 227 (497)
Q Consensus 148 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~E 227 (497)
+|.|..| ....+++++++.+|+..-..-+....++. ..+++++.++|++...+..+|.+.+.+..++++.
T Consensus 26 ~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~~~------~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 26 VLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQDQR------AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred ccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5667777 33455677777777666655555433221 3456677777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 010914 228 LKELELKSKRFKELE 242 (497)
Q Consensus 228 l~~le~e~~~L~~eE 242 (497)
|.+++..+..|+.+|
T Consensus 96 I~~~~~~l~~l~~q~ 110 (420)
T COG4942 96 IADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666665544
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.42 E-value=1.9 Score=48.22 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 206 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
....+..+.+.|..+.++..+.|.+|+.++..+.
T Consensus 200 ~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~ 233 (546)
T PF07888_consen 200 SSEELKEERESLKEQLAEARQRIRELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555444443
No 27
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.37 E-value=3.5 Score=43.09 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=93.5
Q ss_pred CcchhhHHHHHHHHHhhcCCCccCCc-chHHHHHH---HHHHHHHHHHH------HHHHHHHHHHHHHHHhccccc----
Q 010914 124 SGFHSTITVLKRAFEIATSQTQVEQP-LCLECMRV---LSDKLDKEVDD------VTRDIEAYEACLQRLEGEARD---- 189 (497)
Q Consensus 124 ~~ls~~i~~l~~lFdIlSs~s~IDhP-LC~eC~d~---Lle~Ld~qle~------~~~E~d~Y~~fL~~L~~~~~~---- 189 (497)
.-|..+|.-=.++|.=+...+.++.| |=.|=+.. .-..|+.|+.- ++....=|.-=.+-+++-...
T Consensus 73 ~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~ 152 (312)
T smart00787 73 KELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDEN 152 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888899999999998888 44444321 22334444443 344444465544444321100
Q ss_pred --CC-CH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010914 190 --VL-SE-ADFL-------KEKLKIEEEERKLEAAIEETEKQNAEVNA----ELKELELKSKRFKELEERYWQEFNNFQF 254 (497)
Q Consensus 190 --~~-~e-e~l~-------~e~~~Le~EE~~L~~eL~~LE~e~~~l~~----El~~le~e~~~L~~eE~~~w~e~n~~q~ 254 (497)
.+ .+ +.+. .-+-++.+....|..++..|.+-..+++. ++..+++++..++.+-...-+....++.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0011 11122344455555666666555555533 6666776776666666667777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 255 QLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 255 ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
++...........++..-.+.++..+++
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777777777777777777776
No 28
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.30 E-value=1.6 Score=50.40 Aligned_cols=169 Identities=15% Similarity=0.206 Sum_probs=98.0
Q ss_pred cCCcchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 146 VEQPLCLECMRVLSDKLDKEV-------DDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 218 (497)
Q Consensus 146 IDhPLC~eC~d~Lle~Ld~ql-------e~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE 218 (497)
-..|.=.||...|.+..+.=. +.+..|.+.....|+...++..+ .-.++.++++.|.+..++|.+.++++.
T Consensus 529 ~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~--~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 529 SSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLK--ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899988776533222 22223333333333332221110 113345555666666666677777776
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 010914 219 KQNAEVNAELKELELKSK----RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 294 (497)
Q Consensus 219 ~e~~~l~~El~~le~e~~----~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~h 294 (497)
...+.+.+.++.+-.... .+-.-|++|-+++..++.++..++...+.+++++++.+.+++ ++.+.-.
T Consensus 607 d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~~------- 677 (717)
T PF10168_consen 607 DKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPKK------- 677 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccC-------
Confidence 666666665555433222 245677888888888888887777777777777777666666 2222221
Q ss_pred cCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 010914 295 DGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 337 (497)
Q Consensus 295 dG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 337 (497)
.+|+ +| .--+..|-.++.|-.--+..+.+.+
T Consensus 678 ----~s~~------L~--~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 678 ----KSIV------LS--ESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred ----CCcc------CC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22 2568889999998888887777654
No 29
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=1.5 Score=52.64 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 010914 207 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL 286 (497)
Q Consensus 207 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~ 286 (497)
..+...+|..++.+...+..|+.+.+++...+..++..+-...+.+...+.+......+...+- .+..-|-+|+..
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~-kVl~al~r~kes--- 612 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRN-KVLDALMRLKES--- 612 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHc---
Confidence 3334445566666666667777777777777777777777777666665555443333332221 122234555543
Q ss_pred CCceeeeecCCeeeeccc--cCCCCCCCCCChH
Q 010914 287 NDAFPIWHDGEFGTINNF--RLGRLPKIPVEWD 317 (497)
Q Consensus 287 Nd~F~I~hdG~fGTINGl--RLGrlp~~~V~W~ 317 (497)
|-|||| |||-|..++-.++
T Consensus 613 ------------G~i~Gf~GRLGDLg~Id~kYD 633 (1293)
T KOG0996|consen 613 ------------GRIPGFYGRLGDLGAIDEKYD 633 (1293)
T ss_pred ------------CCCCccccccccccccchHHH
Confidence 345665 6776655444443
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.22 E-value=1 Score=53.83 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 010914 212 AAIEETEKQNAEVNAELKELELKSKRFKELEERYW---QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 288 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w---~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd 288 (497)
+.|++|-+..++++++|.++.+.+ -++|...= ...+.-..+|..+|.+.+.|..-+.....|+++|+..||...
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L---~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA 1301 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDL---PQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGA 1301 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhH
Confidence 345555555555555555554332 23333222 333444578888999999999999999999999999998765
Q ss_pred ceeeee
Q 010914 289 AFPIWH 294 (497)
Q Consensus 289 ~F~I~h 294 (497)
.=-|.|
T Consensus 1302 ~~~~r~ 1307 (1758)
T KOG0994|consen 1302 FNSTRH 1307 (1758)
T ss_pred HHHHHH
Confidence 444444
No 31
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.18 E-value=4.1 Score=38.58 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
..++++....+|.+.....+..+..+- .++......+.++.+...+++..++...+++.+++.++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESEL------EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444333211 112222222333444444455555555555555554444
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.09 E-value=0.89 Score=43.42 Aligned_cols=17 Identities=0% Similarity=0.235 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIE 174 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d 174 (497)
+-.+++..++.+.++++
T Consensus 55 VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 55 VRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55577777777777765
No 33
>PRK09039 hypothetical protein; Validated
Probab=94.09 E-value=2.7 Score=44.36 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=17.0
Q ss_pred CCchhhHHHHHHHhhHHHHHHH
Q 010914 433 KQENWTKALKYTLCNLKWALFW 454 (497)
Q Consensus 433 ~~e~WTkAlK~lLtNlKWlLaw 454 (497)
...+|.-+-+--..-.++++..
T Consensus 282 ~~~N~~LS~~RA~aV~~~Li~~ 303 (343)
T PRK09039 282 FRDNWELSSARAISVVKFLIAL 303 (343)
T ss_pred cccHHHHHHHHHHHHHHHHHHC
Confidence 3568999988888888887643
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=93.90 E-value=2.2 Score=49.29 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=4.2
Q ss_pred CCCccCCc
Q 010914 142 SQTQVEQP 149 (497)
Q Consensus 142 s~s~IDhP 149 (497)
.|.+++.+
T Consensus 133 ~Qg~~~~~ 140 (880)
T PRK03918 133 RQGEIDAI 140 (880)
T ss_pred eccchHHH
Confidence 45555554
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.81 E-value=2.9 Score=41.55 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
++.+..+....++.+|....+++.+|..+...+..++..+.++-.-...+.-++..+...+..+..+++.+.....+|.+
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666666666666666666666666666666666666666666666666666655554
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=93.74 E-value=2.4 Score=49.11 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=3.7
Q ss_pred CCCceee
Q 010914 351 GSYPRIM 357 (497)
Q Consensus 351 GS~SkI~ 357 (497)
|.|+.|.
T Consensus 754 ~~~~~i~ 760 (880)
T PRK02224 754 DAYSHIE 760 (880)
T ss_pred CCeeEEE
Confidence 4555554
No 37
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.70 E-value=6.6 Score=38.49 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
||..|+.++.+..+.......-+..+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~ 54 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEIS 54 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555555554443
No 38
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.70 E-value=2 Score=46.80 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 162 LDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 162 Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
++.+++..+.+.+.|...+..++.
T Consensus 186 l~~~i~~l~~~i~~~~~~i~~~~~ 209 (562)
T PHA02562 186 LDMKIDHIQQQIKTYNKNIEEQRK 209 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444444444444544443
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=93.69 E-value=1.7 Score=50.41 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010914 256 LIAHQEERDAISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 256 l~~~~ee~~sl~~q~~~~~~qLdkL~kt 283 (497)
+.+.+++...+...+......++.|...
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~ 621 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAEL 621 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.51 E-value=3.3 Score=46.39 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 227 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~E 227 (497)
+.+|...|..+..++.+.|.+||.+...+.+.
T Consensus 204 l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 204 LKEERESLKEQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445444454555555555444444333
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.44 E-value=3.6 Score=49.75 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=34.1
Q ss_pred chhhHHHHHHHHHhhcCCCccCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 126 FHSTITVLKRAFEIATSQTQVEQ-------------PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQR 182 (497)
Q Consensus 126 ls~~i~~l~~lFdIlSs~s~IDh-------------PLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~ 182 (497)
++.+......||+-++|-+..+- --|..| +.+++.++.+++.+.++++.-..|.+.
T Consensus 150 ~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~-~~~~~el~~~l~~L~~q~~~a~~y~~l 218 (1163)
T COG1196 150 INAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERL-EDLLEELEKQLEKLERQAEKAERYQEL 218 (1163)
T ss_pred HcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555567777766443321 125554 345666888888888888876666643
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.41 E-value=2 Score=42.43 Aligned_cols=80 Identities=10% Similarity=0.140 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
.+..+++|+++++.+.+.-..-.+.. ..++...+...+.+..+|.++.++|.++.+.+.+++..++.+..+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQR---------TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677776665444422222110 122333334444445555555556666666666666666666555
Q ss_pred HHHHHHHHH
Q 010914 238 FKELEERYW 246 (497)
Q Consensus 238 L~~eE~~~w 246 (497)
+++.+..-|
T Consensus 165 ~~~~~~~~w 173 (206)
T PRK10884 165 KQRTIIMQW 173 (206)
T ss_pred HHHHHHHHH
Confidence 555554444
No 43
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.40 E-value=4.8 Score=45.22 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=6.7
Q ss_pred HHHHHHhHHHHHHHHH
Q 010914 244 RYWQEFNNFQFQLIAH 259 (497)
Q Consensus 244 ~~w~e~n~~q~ql~~~ 259 (497)
+.-+++|..+-++..+
T Consensus 343 ~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 343 KLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 44
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.36 E-value=3.4 Score=45.92 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 169 VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 248 (497)
Q Consensus 169 ~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e 248 (497)
.++|-..|-.|+++|..-... ...+.+++...-+|...+.+|+-.|+.+...++.+++.+..|.+.+++.=..|-..
T Consensus 193 ~~keq~~y~~~~KelrdtN~q---~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da 269 (596)
T KOG4360|consen 193 EEKEQQLYGDCVKELRDTNTQ---ARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA 269 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666677777766532110 12234455555555566666666666666666666666665555565554445555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeec
Q 010914 249 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHD 295 (497)
Q Consensus 249 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hd 295 (497)
-..++.++.+.+|+-......++-++..|..|+.+...+....=.|+
T Consensus 270 ~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~ 316 (596)
T KOG4360|consen 270 QRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALS 316 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHH
Confidence 55556666666666666777788888899999998888876654443
No 45
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.27 E-value=3.1 Score=41.84 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+.+|...|..|.....++|.++......++..|+.++.+..+.
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555444433
No 46
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=3.6 Score=46.54 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQ--EFNNFQFQLIAHQEERDAISSKIEVS 273 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~-~~w~--e~n~~q~ql~~~~ee~~sl~~q~~~~ 273 (497)
.+++.+++..-++|..+...|+.+.+++++++..|+.+...+..+++ ..|. ++...+.....++.++..-...++..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666666666666666666643332 3333 22333333333333333333344444
Q ss_pred HHHHHHHhhccc
Q 010914 274 QAHLELLKRTNV 285 (497)
Q Consensus 274 ~~qLdkL~ktNV 285 (497)
...|.+|++.+-
T Consensus 501 ~~~l~~l~k~~~ 512 (652)
T COG2433 501 ERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHh
Confidence 455555555443
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.19 E-value=3.2 Score=51.59 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~ 181 (497)
+.++.++..+++++..+..+++
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 48
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.98 E-value=3.8 Score=42.62 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 010914 260 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 308 (497)
Q Consensus 260 ~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGr 308 (497)
.+++..+..++..++.+++.++.. .-+.+-.=-.||.+.+++-...|.
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~~-l~~~~i~AP~dG~V~~~~~~~~G~ 292 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARDR-LQRLIIRSPVDGTVQSLKVHTVGG 292 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhcEEECCCCcEEEEEEEEccCc
Confidence 344455566666666666654431 111112223477776666555665
No 49
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.85 E-value=10 Score=37.67 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 277 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qL 277 (497)
..+...+.--..+...+.+|+.+...+...++.++.......+.|..|=..+..+..++.+.....+....+.......+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666677777777766666666666666665666666666666665555555555555444444444
Q ss_pred HHH
Q 010914 278 ELL 280 (497)
Q Consensus 278 dkL 280 (497)
+.|
T Consensus 207 d~l 209 (237)
T PF00261_consen 207 DRL 209 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 50
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.83 E-value=0.65 Score=46.68 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 267 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~ 267 (497)
++...++.+.+|...|.++++++|.+.++++..|+.++.|...|++.=+..-.++..++..+.++.+.....+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchH
Confidence 3334455667788889999999999999999999999999999988777777788888888777766654443
No 51
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.80 E-value=8.5 Score=43.34 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 157 VLSDKLDKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 157 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
.-++-|.+....++.+..-|+.++..++..
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345667778888888888888888877643
No 52
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.70 E-value=8.8 Score=35.97 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 243 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~ 243 (497)
..++..+-.+...|..+|..+-+++..+.+++...+.++..|+....
T Consensus 58 ~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 58 EEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455555556666666666666666666666666555554443
No 53
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=92.55 E-value=7 Score=37.94 Aligned_cols=67 Identities=31% Similarity=0.399 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 207 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 279 (497)
Q Consensus 207 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 279 (497)
..++..++..|+.+..++..++.+++.+.+.++..+++. .+.....+++|.+-++.+..+..++|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~------~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL------RQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666665555554333221 1122233455555555555555555543
No 54
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.55 E-value=8 Score=37.77 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010914 217 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 271 (497)
Q Consensus 217 LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 271 (497)
+|.+..+++..|.+++.+...+...-+..+.+.+.++-......++...++.+++
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443334333444556666666655555555555554444
No 55
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.53 E-value=11 Score=39.33 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~ 181 (497)
.++.++..+..+...+..+++
T Consensus 85 ~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 85 ELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 355555555555555555444
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.52 E-value=3.3 Score=46.30 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHh-hc--CCCccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 126 FHSTITVLKRAFEI-AT--SQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 183 (497)
Q Consensus 126 ls~~i~~l~~lFdI-lS--s~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L 183 (497)
+..+|..+.+-..= +. +..+++. ..+=.+.+-+.+|.=++..++|..++....+..
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~--~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDE--AEEKNEEIQERIDQLYDILEREVKARKYVEKNS 312 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666655543322 11 2233443 666677777888888888888888877655444
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.46 E-value=8.8 Score=39.99 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
+.|.+.|+..++.+..|.......++.+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666777666666666554
No 58
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.39 E-value=6.3 Score=42.62 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 209 KLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+|..+|..|-.++.+++++...|..+.++|
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 59
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.28 E-value=5.9 Score=47.39 Aligned_cols=134 Identities=15% Similarity=0.200 Sum_probs=79.4
Q ss_pred HhhcCCCccCCcchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCHHHHHHHHHHHHHHHHHHHHH
Q 010914 138 EIATSQTQVEQPLCLECMRV---LSDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAA 213 (497)
Q Consensus 138 dIlSs~s~IDhPLC~eC~d~---Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~~ee~l~~e~~~Le~EE~~L~~e 213 (497)
|+..++...--.+-+|=... ..+.+..++++.+.|.+++..-++.+...-.. ......+.+++.+++.....-..+
T Consensus 419 dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~e 498 (1041)
T KOG0243|consen 419 DLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKE 498 (1041)
T ss_pred HHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455554422 24455566666666666666666655432110 011233455566666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010914 214 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 271 (497)
Q Consensus 214 L~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 271 (497)
++.++.+..++..+|+.-+.-..+++..|...-+.-..++..+...+++..++-.+++
T Consensus 499 l~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 499 LESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777766666666677777776666677777777777777766654443
No 60
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=92.07 E-value=9.3 Score=37.10 Aligned_cols=97 Identities=22% Similarity=0.357 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccc----ccCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRL---EGEA----RDVLSEADFLKEKLKIEEEERK----------LEAAIEETE 218 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L---~~~~----~~~~~ee~l~~e~~~Le~EE~~----------L~~eL~~LE 218 (497)
..|+..|+.++.+-.+-|..+..-+..- .... .+.....++..-+.+|++|..+ |..+|++..
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888777777777766221 1000 0001123455455556555544 666778878
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHH
Q 010914 219 KQNAEVNAELKELELKSKR----FKELEERYWQEFNNF 252 (497)
Q Consensus 219 ~e~~~l~~El~~le~e~~~----L~~eE~~~w~e~n~~ 252 (497)
...+.|..+|..+..+... |...|..||.+-..|
T Consensus 95 ~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887665554 344444444443333
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.02 E-value=10 Score=35.27 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
|...|..||.+.++.+..+.....++...+..= ..|.++...++.+++..+.+|+-...++..++
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a-------e~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKA-------EHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444443333333221 22334444455555556666665555555443
No 62
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.98 E-value=9.1 Score=43.05 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=11.8
Q ss_pred CCCcchhhHHHHHHHHHhhcC
Q 010914 122 NNSGFHSTITVLKRAFEIATS 142 (497)
Q Consensus 122 ~~~~ls~~i~~l~~lFdIlSs 142 (497)
.|..|...|+.+...|..=++
T Consensus 64 qN~~L~~di~~lr~~~~~~ts 84 (546)
T KOG0977|consen 64 QNRKLEHDINLLRGVVGRETS 84 (546)
T ss_pred HHHHHHHHHHHHHhhccCCCc
Confidence 355566666666655544433
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.83 E-value=3.8 Score=50.92 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 249 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 249 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
.++|.-++.+.+.++..++.++..+...++.+++
T Consensus 444 LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555554444
No 64
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.78 E-value=6.4 Score=42.55 Aligned_cols=28 Identities=14% Similarity=0.412 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
++.++.++..++.+...|...++.++++
T Consensus 174 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 201 (457)
T TIGR01000 174 KAQLDQQISKTDQKLQDYQALKNAISNG 201 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345555666666666666666655543
No 65
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.68 E-value=5.2 Score=42.16 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 154 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 227 (497)
Q Consensus 154 C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-----~~~~-ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~E 227 (497)
+...-++.|.+++.+++.|++.++.-+.+.+.... ..++ .+++..+++++.+.-..|+.++..+-.|.+++..|
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~E 162 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTE 162 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678999999999999999998877653321 1122 25566777777777777888888888888888777
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 228 LKELELKSKRFKELEE--------------RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 279 (497)
Q Consensus 228 l~~le~e~~~L~~eE~--------------~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 279 (497)
....+.+..+|+.+=. ...-+-.-++-++...++|...+...+.-=..-|++
T Consensus 163 RD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 163 RDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777753311 011111223344667777777776555555555664
No 66
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.67 E-value=1.3 Score=42.72 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQR 182 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~ 182 (497)
-.+..++.++.+.+.....-|..
T Consensus 77 ~~l~~ELael~r~~~el~~~L~~ 99 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLVE 99 (194)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 34666666666666555544443
No 67
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.58 E-value=3.8 Score=48.57 Aligned_cols=172 Identities=21% Similarity=0.339 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEKQNA-------EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 266 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~-------~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl 266 (497)
+-+..|+..++.+..+...++++++.... +.+++...+..+..++...-+..|++-+.++..+.. +
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~-------~ 486 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIAN-------L 486 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 34555666666666666666665555444 455555556666677777777889998888766644 4
Q ss_pred HHHHHHHHHHHHHHhhcccCCCceeee-------ecCCeeeeccccCCCCC----------------CCCCChHHHHHHH
Q 010914 267 SSKIEVSQAHLELLKRTNVLNDAFPIW-------HDGEFGTINNFRLGRLP----------------KIPVEWDEINAAW 323 (497)
Q Consensus 267 ~~q~~~~~~qLdkL~ktNV~Nd~F~I~-------hdG~fGTINGlRLGrlp----------------~~~V~W~EINAAw 323 (497)
+.-+..++.+|...-..+|+|-.=.|. .+|.|||.-.| =.+| ++-|+=+||
T Consensus 487 ~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL--~~v~~~f~tavEvtaGNsLF~iVVdndev---- 560 (1200)
T KOG0964|consen 487 EEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYEL--IKVPNKFKTAVEVTAGNSLFNIVVDNDEV---- 560 (1200)
T ss_pred HHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhh--hcCCHHHHhHHhhhcccceEEEEecccHH----
Confidence 444566666676666666666432211 46777775432 1222 367788887
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeeeecC--CCceeeec-CCceeecccCCCCccccchhHHHHHHH
Q 010914 324 GQACLLLHTMCQYFRPKFPYRIKIIPMG--SYPRIMDS-NNNTYELFGPVNLFWSTRYDKAMTLFL 386 (497)
Q Consensus 324 GQ~~LLL~tla~~l~~kf~y~YkLvPmG--S~SkI~~~-~~~~~eLyg~~~lf~~~kFD~AM~afL 386 (497)
+...|..+- ++ ++. +..+.|+- +++.+.-. +.++.||-. .+=.+.+||+|+.+..
T Consensus 561 --ATkIl~~~n-~m--~~G-rVTF~PLNrl~~r~v~yp~~sdaiPli~--kl~y~p~fdka~k~Vf 618 (1200)
T KOG0964|consen 561 --ATKILRKLN-KM--KGG-RVTFMPLNRLKARDVEYPKDSDAIPLIS--KLRYEPQFDKALKHVF 618 (1200)
T ss_pred --HHHHHHHHH-hc--cCC-eeEEeecccCchhhccCCCCCCccchHH--HhCcchhhHHHHHHHh
Confidence 444444332 33 445 78889987 44333211 223344432 1223668999887654
No 68
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.57 E-value=11 Score=34.67 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.4
Q ss_pred HHHHHh
Q 010914 276 HLELLK 281 (497)
Q Consensus 276 qLdkL~ 281 (497)
++++|+
T Consensus 141 E~~kLk 146 (151)
T PF11559_consen 141 EIEKLK 146 (151)
T ss_pred HHHHHH
Confidence 344443
No 69
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.56 E-value=11 Score=34.48 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 187 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~ 187 (497)
-.+++.|..++...+-|+..++.-+.+|..+.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999998887643
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.55 E-value=4.4 Score=40.06 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 010914 266 ISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 266 l~~q~~~~~~qLdkL~kt 283 (497)
+.++.+.+..+++.+++.
T Consensus 151 ~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 151 AQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444445555543
No 71
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.47 E-value=4.3 Score=40.59 Aligned_cols=16 Identities=31% Similarity=0.864 Sum_probs=10.5
Q ss_pred CCchhHHHHHHHHHHH
Q 010914 8 PLPLHRRRRLLRRQVL 23 (497)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (497)
|+|+.|||.+...+..
T Consensus 22 pip~r~~~~~~~~~~~ 37 (216)
T KOG1962|consen 22 PIPPRRRRKIFKDRLK 37 (216)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6777777776655443
No 72
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.45 E-value=5.9 Score=44.88 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 166 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 236 (497)
Q Consensus 166 le~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 236 (497)
++.+..+.+.|..-.++ +. ...++.+++.+++.+..++..+++.++.+.+.+++++..++.+..
T Consensus 184 ~~~L~~dl~~~~~~~~~---~~----~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKK---SE----LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHh---cc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666665443221 11 113344555556666666556666555555555555555554443
No 73
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.41 E-value=0.8 Score=40.88 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=12.3
Q ss_pred cCCCceeeeecCCeee
Q 010914 285 VLNDAFPIWHDGEFGT 300 (497)
Q Consensus 285 V~Nd~F~I~hdG~fGT 300 (497)
+|++=|||.| -.||.
T Consensus 81 LY~EGFHICn-~~yG~ 95 (107)
T PF06156_consen 81 LYQEGFHICN-VHYGS 95 (107)
T ss_pred HHhcCeeeCc-HHhCC
Confidence 6999999988 66665
No 74
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=7.6 Score=43.73 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVN 225 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 225 (497)
+..|++..+.-|.+|..+..+||.|.--+.
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 445666666777777777777666554433
No 75
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=91.34 E-value=7.3 Score=40.75 Aligned_cols=74 Identities=15% Similarity=0.242 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
.|-++-+++.++--.|..-|+.+..... .++..++...+.+++.........|++++++.+.+..++...+...
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~-~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~ 111 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLK-EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQL 111 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888899999988875432 3666777777777777777777777777777777777776555443
No 76
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.29 E-value=10 Score=37.11 Aligned_cols=15 Identities=7% Similarity=0.477 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEA 175 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~ 175 (497)
.++.+++++..|...
T Consensus 23 elq~~l~~l~~ENk~ 37 (194)
T PF15619_consen 23 ELQRKLQELRKENKT 37 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 77
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=91.28 E-value=6 Score=40.20 Aligned_cols=103 Identities=26% Similarity=0.383 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHhHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEK-QNAEVNAELKELELKSKRFK---EL----EERYWQEFNNFQFQLIAHQEERDA 265 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~-e~~~l~~El~~le~e~~~L~---~e----E~~~w~e~n~~q~ql~~~~ee~~s 265 (497)
+.+..|+++--.+-+.|..++.++++ +..-++.+++.|..+..+++ ++ ...|=.+.+.+|..+..+++
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~---- 235 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQT---- 235 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 45666776655666667777776654 44457777777766666553 22 22333344444444444444
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHH
Q 010914 266 ISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAW 323 (497)
Q Consensus 266 l~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAw 323 (497)
+|+-|+. -+|.-|-.+.|-. |+ .++|+-.|||-||
T Consensus 236 ----------~L~~L~~--e~~r~~l~~~Dm~---------G~--~~~vpLsei~~aw 270 (289)
T COG4985 236 ----------ELDALRA--ELERQFLYLVDMQ---------GE--TVSVPLSEILDAW 270 (289)
T ss_pred ----------HHHHHhh--hhhhceEEEEccC---------CC--EeeccHHHHHHhh
Confidence 4444432 2455677777743 22 2678999999998
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.20 E-value=19 Score=36.61 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 278 (497)
+..|...+...+..|+.+...+......|+..+ .+.|.+|=.+...++..+..++.++..+..++........
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l---~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQL---RELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhH---HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444332 2223333344444444455555555555554444443333
No 79
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.02 E-value=10 Score=45.98 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=12.3
Q ss_pred ccchhHHHHHHHHHHH
Q 010914 375 STRYDKAMTLFLSCLK 390 (497)
Q Consensus 375 ~~kFD~AM~afL~cl~ 390 (497)
.+|||.-|.+|--+-.
T Consensus 1134 k~RldEFm~gf~~Is~ 1149 (1293)
T KOG0996|consen 1134 KRRLDEFMAGFNIISM 1149 (1293)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4789999999877633
No 80
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=90.79 E-value=0.11 Score=35.04 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.2
Q ss_pred cchhhHHHHHHHHHhhcCC
Q 010914 125 GFHSTITVLKRAFEIATSQ 143 (497)
Q Consensus 125 ~ls~~i~~l~~lFdIlSs~ 143 (497)
.+|+|+++...+|||+|++
T Consensus 7 ~ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 7 NLSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHHCCTT--
T ss_pred ccchhheecccccccccCC
Confidence 3999999999999999986
No 81
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.73 E-value=8.2 Score=43.22 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 270 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 270 (497)
+++..++.+-..+...+.........+..++.++..+...++.+...++...+.+...-.+..+....+..++
T Consensus 355 keL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 355 KQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444555555555555555655555666666655555544444444443333
No 82
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.67 E-value=7.5 Score=35.46 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+...+..++-|...+..++..++.++..+.+||-.+-.+.+++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666666665554444
No 83
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.55 E-value=15 Score=37.04 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 273 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 273 (497)
+.+|.+.|..|+....++|+.+...+..|+..=++-|.+.+..+.....+.+|..-++.+++..
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777666777766666666666666667777777666666555554444444333
No 84
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.19 E-value=6 Score=48.48 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=7.0
Q ss_pred cCCeeeeccccC
Q 010914 295 DGEFGTINNFRL 306 (497)
Q Consensus 295 dG~fGTINGlRL 306 (497)
.|.. |+++|+
T Consensus 1155 ~~~~--~~~i~~ 1164 (1311)
T TIGR00606 1155 RGQD--IEYIEI 1164 (1311)
T ss_pred CccH--HHHhhc
Confidence 3444 788888
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.11 E-value=15 Score=45.11 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
+++..++..++.+.+.+..+++.+..+.+.+..+|..|
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555555555555555555555
No 86
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=90.02 E-value=9.5 Score=44.71 Aligned_cols=145 Identities=16% Similarity=0.181 Sum_probs=73.2
Q ss_pred HHHHHhhcCCCccCCc--chHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhcccccCCCHHHHHH---
Q 010914 134 KRAFEIATSQTQVEQP--LCLECMRVLSDKLDKEVDDVTRDIEA----------YEACLQRLEGEARDVLSEADFLK--- 198 (497)
Q Consensus 134 ~~lFdIlSs~s~IDhP--LC~eC~d~Lle~Ld~qle~~~~E~d~----------Y~~fL~~L~~~~~~~~~ee~l~~--- 198 (497)
+.+...||+--.+-+| .|.+-.......+..=...+.+|.+. |...++++..+. +.++..+
T Consensus 522 ~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~r----e~Eea~~q~~ 597 (988)
T KOG2072|consen 522 TAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVER----EAEEAQEQAK 597 (988)
T ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHH
Confidence 3444667776667778 48877776665555555555555544 333333332211 1111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------------HHHHHHhHHHHHHHHHHH
Q 010914 199 -EKLKIEEEERKLEAAIEETEKQNAEVNAE---LKELELKSKRFKELEE-------------RYWQEFNNFQFQLIAHQE 261 (497)
Q Consensus 199 -e~~~Le~EE~~L~~eL~~LE~e~~~l~~E---l~~le~e~~~L~~eE~-------------~~w~e~n~~q~ql~~~~e 261 (497)
+.+.=+.|+++|.+++.+=|+++-..+.+ .+.+++....+.+-|. +-..--.-.+.+..+++.
T Consensus 598 e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~K 677 (988)
T KOG2072|consen 598 EQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEK 677 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHH
Confidence 11112456666666666555544433333 2222222222221110 111111223466778888
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 010914 262 ERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 262 e~~sl~~q~~~~~~qLdkL~k 282 (497)
++..++.++++.-..+|.+.+
T Consensus 678 e~kElq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 678 ERKELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 888888888888877776655
No 87
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.01 E-value=7.7 Score=37.42 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010914 252 FQFQLIAHQEERDAI 266 (497)
Q Consensus 252 ~q~ql~~~~ee~~sl 266 (497)
++-++..++.|.+.|
T Consensus 163 ~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 163 LEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444433
No 88
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.00 E-value=18 Score=38.02 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=5.8
Q ss_pred cchhhHHHHHHH
Q 010914 125 GFHSTITVLKRA 136 (497)
Q Consensus 125 ~ls~~i~~l~~l 136 (497)
.+..++..|..=
T Consensus 24 ~l~~~~~sL~qe 35 (310)
T PF09755_consen 24 QLRKRIESLQQE 35 (310)
T ss_pred HHHHHHHHHHHH
Confidence 355555544443
No 89
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.00 E-value=25 Score=40.70 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=36.4
Q ss_pred HHHhhcCCCccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 136 AFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 136 lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
.|-.-+..+.| .|+-.|-+..+.. +++.+..+.+|||+.+.-.+.|+++
T Consensus 390 ~~~~k~~~s~~-ssl~~e~~QRva~-lEkKvqa~~kERDalr~e~kslk~e 438 (961)
T KOG4673|consen 390 DLKRKSNESEV-SSLREEYHQRVAT-LEKKVQALTKERDALRREQKSLKKE 438 (961)
T ss_pred HHHHHhhcccc-cchHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444455544 4677787777665 8999999999999999988877754
No 90
>PRK01156 chromosome segregation protein; Provisional
Probab=89.96 E-value=11 Score=44.10 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 249 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 249 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
++.....+..+..+...++.++......++.|++
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777788888877777777777775
No 91
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.94 E-value=16 Score=46.73 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 248 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e 248 (497)
.+.+++.+...++.+++.|+.+...+++.....-++
T Consensus 951 ~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke 986 (1930)
T KOG0161|consen 951 TLQKLELEKNAAENKLKNLEEEINSLDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555444444333333333
No 92
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.92 E-value=17 Score=37.72 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEG----EARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~----~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
|++|+.+++.+.+|++.-+=-|+.|+. +...+ ++-..+...|+.|-..|....+.+|+.++.+..++..-+.
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~---e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~- 95 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKV---EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES- 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH-
Confidence 567888888888888765555555542 11100 1111222334444555555555555555555543332222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 010914 235 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 288 (497)
Q Consensus 235 ~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd 288 (497)
.+|-+.-++.......+.|+..+.....+|++.+..+.-.+
T Consensus 96 -------------qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 96 -------------QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 22333344444444445566666666777777777766333
No 93
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.77 E-value=7 Score=45.18 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
...+||.|...|..|++..|++...++
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e 572 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELE 572 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444444443
No 94
>PRK01156 chromosome segregation protein; Provisional
Probab=89.77 E-value=12 Score=43.68 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 010914 151 CLECMRVLSDKLDKEVDDV 169 (497)
Q Consensus 151 C~eC~d~Lle~Ld~qle~~ 169 (497)
|.++....+..++.+++..
T Consensus 167 ~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 167 NYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544443
No 95
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.73 E-value=25 Score=37.03 Aligned_cols=58 Identities=33% Similarity=0.521 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---CC-HH-----HHHHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV---LS-EA-----DFLKEKLKIEEEERKLEAAIE 215 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~---~~-ee-----~l~~e~~~Le~EE~~L~~eL~ 215 (497)
++..|.++++.+++|...|...|.+|..++.+- +. +. -+.+...+|+.|.+.|...|+
T Consensus 136 ~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 136 LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566788888888888888888888887654221 10 11 134566667777777777665
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.68 E-value=30 Score=37.91 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=5.9
Q ss_pred eeeecCCeeee
Q 010914 291 PIWHDGEFGTI 301 (497)
Q Consensus 291 ~I~hdG~fGTI 301 (497)
.|+.-|.||.-
T Consensus 285 ~i~~t~~~~~~ 295 (420)
T COG4942 285 LISSTGGFGAL 295 (420)
T ss_pred ccccccccccc
Confidence 35555666553
No 97
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.61 E-value=6.4 Score=44.65 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF--KELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVS 273 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L--~~eE~-~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 273 (497)
.+..++|+.|-..|..++++++++.+.|++++..+..+...- ...|- ..=+..+.++.+|.+-....+.|+.++...
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666666666664433311 11111 122456677888888777777777776655
Q ss_pred H
Q 010914 274 Q 274 (497)
Q Consensus 274 ~ 274 (497)
.
T Consensus 508 ~ 508 (652)
T COG2433 508 R 508 (652)
T ss_pred H
Confidence 4
No 98
>PRK09039 hypothetical protein; Validated
Probab=89.54 E-value=17 Score=38.49 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~ 181 (497)
+.-+..+..+++.+++++..-+..++
T Consensus 80 ~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 80 QDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566666666666654444333
No 99
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.42 E-value=23 Score=37.40 Aligned_cols=167 Identities=13% Similarity=0.240 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------cc---------c--CC----CHHHH-------HHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGE-------AR---------D--VL----SEADF-------LKEKLKIEEEERKLE 211 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~-------~~---------~--~~----~ee~l-------~~e~~~Le~EE~~L~ 211 (497)
.|-++++....|+|.|..-.+.|... .. . .. ....+ .++...|..|-..|.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777766555411 00 0 00 01112 233445666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 212 AAIEETEKQNAEVNAELKELEL------------KSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~------------e~~~L-~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 278 (497)
+.|.+++.+..-+...+...+. +.++| .++ +..+.....+++++....||...+....++-+...+
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL-Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL-EKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666666555554431 11111 222 234444555555555555555555444444444455
Q ss_pred HHhhcccCCCceee--eecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 010914 279 LLKRTNVLNDAFPI--WHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 337 (497)
Q Consensus 279 kL~ktNV~Nd~F~I--~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 337 (497)
||..- ..+| +++..+-.|.+|-+=- ..==..|+.+-.-.-|+..+|.+|-
T Consensus 172 RLN~E-----Ln~~L~g~~~rivDIDaLi~EN----RyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 172 RLNHE-----LNYILNGDENRIVDIDALIMEN----RYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHH-----HHHHhCCCCCCcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54221 1111 0111222333332210 1112358888888999999998763
No 100
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.21 E-value=4.6 Score=37.91 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 151 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA---RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQ 220 (497)
Q Consensus 151 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~---~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e 220 (497)
+..|..-=+..|+.++.++..+........+.|+.+- ...++.+++..++..|++|...+...|+.|...
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555555566666666666666555555554332 124667777777777777777777777776653
No 101
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.15 E-value=11 Score=46.69 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=25.8
Q ss_pred EEecCCCCchhhHHHHHHHhhHHHHHHHHhhCCc
Q 010914 427 ITQSFNKQENWTKALKYTLCNLKWALFWFVGNTN 460 (497)
Q Consensus 427 Ikl~~n~~e~WTkAlK~lLtNlKWlLaw~~~~t~ 460 (497)
+.+.-+-++.|--++-=-|+-.--|=|||+-.-.
T Consensus 608 ~df~e~v~~~~ra~IEaAL~~~GLLDA~v~p~~~ 641 (1353)
T TIGR02680 608 VDFADDVPADVRAGLEAALEAAGLLDAWVTADGT 641 (1353)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCCcceeeCCCcc
Confidence 3344445789999999999999999999985433
No 102
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.14 E-value=14 Score=39.44 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
++.+-+++++.-|+-+-.+++.+-.+...+.+++.+++.+..+..
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777777777777777777777777777766665554
No 103
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.05 E-value=19 Score=40.31 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
...|-+.|...|+..|++++.+..|++.+......|++ +.=....+++-|+....|-+.+++.++.....+++.|+.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD---EL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD---ELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777887788888787777777666555543 344666778888888999999999999999999999984
Q ss_pred c
Q 010914 283 T 283 (497)
Q Consensus 283 t 283 (497)
.
T Consensus 516 ~ 516 (518)
T PF10212_consen 516 A 516 (518)
T ss_pred c
Confidence 3
No 104
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.97 E-value=19 Score=35.42 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=23.1
Q ss_pred HHHHHHHhhcCC-----CccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 132 VLKRAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEA 178 (497)
Q Consensus 132 ~l~~lFdIlSs~-----s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~ 178 (497)
.+++|++|+.++ ..+..|. .=.+.++..|+..+..+.........
T Consensus 3 if~Rl~~iv~a~~n~~~dk~EDP~--~~l~q~irem~~~l~~ar~~lA~~~a 52 (219)
T TIGR02977 3 IFSRFADIVNSNLNALLDKAEDPE--KMIRLIIQEMEDTLVEVRTTSARTIA 52 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555542 1222343 24566666777766666555444433
No 105
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.89 E-value=18 Score=37.26 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 010914 204 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS---SKIEVSQAHLELL 280 (497)
Q Consensus 204 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~---~q~~~~~~qLdkL 280 (497)
+.+...++.....|+.+..++.-|++.++. .++..--+|++....+..++.......+++. ..++++..-|++-
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 334444444455555555555444444332 2344444666766666666655544444443 4567777778888
Q ss_pred hhcccCC
Q 010914 281 KRTNVLN 287 (497)
Q Consensus 281 ~ktNV~N 287 (497)
++--||.
T Consensus 128 kRati~s 134 (333)
T KOG1853|consen 128 KRATIYS 134 (333)
T ss_pred hhhhhhh
Confidence 8766654
No 106
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.74 E-value=19 Score=39.69 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010914 260 QEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 260 ~ee~~sl~~q~~~~~~qLd 278 (497)
.+.+.+...++.-.+.||.
T Consensus 427 ~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555543
No 107
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.70 E-value=30 Score=35.17 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=14.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 248 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 248 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
+.+.+..++....-.+..+++++...+.+|+.|+
T Consensus 104 el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 104 ELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 3344444443333334444444444444444443
No 108
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=88.70 E-value=25 Score=45.01 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~l 231 (497)
+..+|+.|+.+...++..+.+|
T Consensus 962 ~e~~~~~l~~e~~~~~e~~~kL 983 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSLDENISKL 983 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.68 E-value=21 Score=33.31 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
++.|...|...+..||.+.+.+..++..++
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555554444444443
No 110
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.65 E-value=24 Score=41.14 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
.+|++.++.-|.+|.++..+||.|.-.+.+++..|
T Consensus 82 r~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 82 REEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34444455555555555556665555555444443
No 111
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=88.57 E-value=23 Score=33.81 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAE--------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 260 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~--------l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ 260 (497)
..++.++|+..+......|-++.+.... .=.+-..++.++.-+.+.|.+.-.-.+.++..+..+.
T Consensus 46 ~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 46 VIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665544322 1122233344444445555555555666655544433
No 112
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.18 E-value=26 Score=40.60 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
...+..|+.+++.+..|...=+..-+.|+.+
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444567777777777777666655555543
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.99 E-value=15 Score=40.00 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGEAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
+.|+++.+++.++....+--.++..+.. .....+.+.+.+.+.|.|.++|.+|..++-.++-+.+.+-+-+.......+
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677776666554444444433220 001112233444445555566666655555555554444444444444445
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010914 240 ELEERYWQEFNNFQFQLIAHQEERDAIS 267 (497)
Q Consensus 240 ~eE~~~w~e~n~~q~ql~~~~ee~~sl~ 267 (497)
.++-++..+...++.|..+|.+.-..+.
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~ 117 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALR 117 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHH
Confidence 5555666666666666555555544444
No 114
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.99 E-value=37 Score=39.50 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 259 HQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 259 ~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
+.+|++.+..+++..+..++.+++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 115
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.93 E-value=31 Score=37.61 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.2
Q ss_pred hhHHHHHHHH
Q 010914 446 CNLKWALFWF 455 (497)
Q Consensus 446 tNlKWlLaw~ 455 (497)
..+-|||---
T Consensus 453 ~~f~~~lR~q 462 (499)
T COG4372 453 STFGWCLRSQ 462 (499)
T ss_pred hhHHHHHHHh
Confidence 3456666433
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.90 E-value=21 Score=32.48 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 248 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 248 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 280 (497)
....++.++.+.+..++.|..|-...-+||+.|
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666666677777666666667654
No 117
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.84 E-value=28 Score=33.84 Aligned_cols=127 Identities=13% Similarity=0.246 Sum_probs=58.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 146 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLK-EKLKIEEEERKLEAAIEETEKQNAE 223 (497)
Q Consensus 146 IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~l~~-e~~~Le~EE~~L~~eL~~LE~e~~~ 223 (497)
+..|- .=.+..|..|+..+..+.+.......--++++.+...... .++... ....|...+++|..+ +-.+...
T Consensus 21 ~EDP~--~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~---al~~k~~ 95 (221)
T PF04012_consen 21 AEDPE--KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE---ALQRKAD 95 (221)
T ss_pred hcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHH
Confidence 44465 4555566666666666666555555544444432110000 000000 001122222222211 1112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 224 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 277 (497)
Q Consensus 224 l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qL 277 (497)
++.++..++.....+.....++-..+..++.++.++..++..+.++...++.+.
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444555666666777777777777777766665443
No 118
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.75 E-value=27 Score=38.91 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=15.7
Q ss_pred CCcchhhHHHHHHHHHhhcCCCccCCcchHH
Q 010914 123 NSGFHSTITVLKRAFEIATSQTQVEQPLCLE 153 (497)
Q Consensus 123 ~~~ls~~i~~l~~lFdIlSs~s~IDhPLC~e 153 (497)
+.+|+.|+. ..+..|| .+..||.|.+
T Consensus 153 ~f~F~~r~E--~eV~~~l---KnL~YPfl~s 178 (622)
T COG5185 153 GFGFTKRIE--NEVYQIL---KNLRYPFLES 178 (622)
T ss_pred CCCcchhhH--HHHHHHH---HhcCCchhhh
Confidence 455666664 3455555 3567888874
No 119
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=87.70 E-value=4.8 Score=45.38 Aligned_cols=84 Identities=27% Similarity=0.310 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 289 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~ 289 (497)
...||.++|..+++++.||+++..++++++++ +...|-|+.+|+..+++++.+++.|+.+|--.-.
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~--------------i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~ 156 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRL--------------IPQKQLELSALKGEIEQAQRQLEELRETNNPKLF 156 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Confidence 34577778888888888888777666666533 3344556678889999999999999999988888
Q ss_pred eeeee--------cCCeeeeccccCC
Q 010914 290 FPIWH--------DGEFGTINNFRLG 307 (497)
Q Consensus 290 F~I~h--------dG~fGTINGlRLG 307 (497)
..|+- -.+-..|-+.||-
T Consensus 157 LP~sllP~~~pr~l~pp~~~~~c~lh 182 (907)
T KOG2264|consen 157 LPFSLLPLQIPRELEPPSQISPCQLH 182 (907)
T ss_pred eccccCcccCcccCCCccccCcccch
Confidence 77772 1344566676664
No 120
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.51 E-value=32 Score=34.16 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
..++.+...+...+..++.+.+++.+++++.+++..++.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666777777766666666665555543
No 121
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.37 E-value=20 Score=40.49 Aligned_cols=63 Identities=22% Similarity=0.369 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010914 200 KLKIEEEERKLEAAIEETEKQNAE--------------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE 262 (497)
Q Consensus 200 ~~~Le~EE~~L~~eL~~LE~e~~~--------------l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee 262 (497)
+.+|+.|.+.++++|.....|++. ++.+...|..++++++..|.+...+|+.++-+-+.+|..
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 344566666666666655554443 445566677788888888899999998887654444443
No 122
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.27 E-value=9 Score=38.35 Aligned_cols=7 Identities=29% Similarity=0.430 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 010914 154 CMRVLSD 160 (497)
Q Consensus 154 C~d~Lle 160 (497)
|-+.+.-
T Consensus 112 vI~R~~~ 118 (216)
T KOG1962|consen 112 VIRRLHT 118 (216)
T ss_pred HHHHHHH
Confidence 3333333
No 123
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.08 E-value=33 Score=33.89 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
....||++-+.|.++-..+|+|...+.+++..|+.+-..+
T Consensus 75 ~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 75 LAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344455555555555555555555555555544443333
No 124
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.03 E-value=24 Score=42.44 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCCCceeeeCCccceeeEEecCCCCchhhHHHHH
Q 010914 410 CFKLPYKIENDKVENYSITQSFNKQENWTKALKY 443 (497)
Q Consensus 410 ~~~LPY~I~kdkIgg~SIkl~~n~~e~WTkAlK~ 443 (497)
.+.+|- .++-.+|+-|++.|+. -|...|-=
T Consensus 1053 kL~Ppe--g~~~~dGLEvkV~~G~--iWKeSL~E 1082 (1174)
T KOG0933|consen 1053 KLEPPE--GKTVLDGLEVKVKFGG--IWKESLSE 1082 (1174)
T ss_pred cccCCC--CCccccceEEEEEeCc--cHHHHHHH
Confidence 355552 3566789999998886 78877643
No 125
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.94 E-value=35 Score=37.06 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=25.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010914 248 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 248 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 283 (497)
.+...+.++..++.+.+.....|+.....++..+-.
T Consensus 349 ~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 349 TIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777888877777766543
No 126
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=86.91 E-value=43 Score=35.00 Aligned_cols=165 Identities=13% Similarity=0.118 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-HHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EAD---FLKEKLKIEEEERKLEAAIEETEKQ-------NAE 223 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~---l~~e~~~Le~EE~~L~~eL~~LE~e-------~~~ 223 (497)
...-++.+++|++.++++.+.-+.-|...+.+.. ..+ +.. ....+..|+.+..+++.++.++... ...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~-~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNK-VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 3455666777777777766666666655554321 122 111 2233444555555555555544321 112
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeec
Q 010914 224 VNAELKELELKSKRFKEL-EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTIN 302 (497)
Q Consensus 224 l~~El~~le~e~~~L~~e-E~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTIN 302 (497)
+++++..++.++.+.... ....=...+....++.+++.+.+..+..|+.+...++.++-.--. ...++. .|-
T Consensus 247 l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~-~~~~~~------vi~ 319 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADR-QQLYLE------VIS 319 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hheeee------eee
Confidence 333444444333222110 000012456667777788888888888888888888877732221 122221 111
Q ss_pred cccCCCCCCCCC-ChHHHHHHHHHHHHHH
Q 010914 303 NFRLGRLPKIPV-EWDEINAAWGQACLLL 330 (497)
Q Consensus 303 GlRLGrlp~~~V-~W~EINAAwGQ~~LLL 330 (497)
--.+|..|+ |+.=.|.+.|-++.|+
T Consensus 320 ---~p~~P~~p~~P~~~~~l~~~~~~gl~ 345 (362)
T TIGR01010 320 ---QPSLPDDALEPYRLYNILATFVILLI 345 (362)
T ss_pred ---CCCCCCCcCCChHHHHHHHHHHHHHH
Confidence 122444444 3566677776655443
No 127
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.82 E-value=16 Score=36.85 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 241 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~e 241 (497)
++.+..+|..+-...+.++..|.+++.+++.++..|.+.
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEE 97 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555555555555555433
No 128
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.68 E-value=44 Score=38.03 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.+++..++.+..++..++..++.+..++..++..++.+...+.
T Consensus 427 ~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 427 LEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666666655554443
No 129
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.52 E-value=9.2 Score=42.26 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 250 NNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 250 n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
.+++.+..++++++..+..++...+.+|+-+.
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444555555666666666666666665433
No 130
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.50 E-value=23 Score=42.49 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 163 DKEVDDVTRDIEAYEACLQR 182 (497)
Q Consensus 163 d~qle~~~~E~d~Y~~fL~~ 182 (497)
..++.++++|++.|..-++.
T Consensus 786 e~rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 45566677777776665543
No 131
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.38 E-value=24 Score=38.82 Aligned_cols=29 Identities=38% Similarity=0.450 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010914 256 LIAHQEERDAISSKIEVSQAHLELLKRTN 284 (497)
Q Consensus 256 l~~~~ee~~sl~~q~~~~~~qLdkL~ktN 284 (497)
|..|++++.+...=++-...+|++|+..-
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~k 390 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRRK 390 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55577777777777777777888887653
No 132
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.07 E-value=14 Score=43.17 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=15.8
Q ss_pred CCCcchhhHHHHHHHHHhhcCC
Q 010914 122 NNSGFHSTITVLKRAFEIATSQ 143 (497)
Q Consensus 122 ~~~~ls~~i~~l~~lFdIlSs~ 143 (497)
.-++||..+..+..+...++..
T Consensus 387 ~lStfS~~m~~~~~Il~~~~~~ 408 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKADKN 408 (782)
T ss_pred chhHHHHHHHHHHHHHHhCCcC
Confidence 4467888888888877766443
No 133
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.98 E-value=36 Score=33.28 Aligned_cols=109 Identities=28% Similarity=0.342 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 166 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKL-------KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 166 le~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~-------~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+++-...-..|...|..|++...++..--.-..++. ++..+.+.+++++.+-+.+..+++.+|.+++.++.+|
T Consensus 64 idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 64 IDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL 143 (190)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344444555566666666654332211111111222 2333444455555555555556677777777776666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 239 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 239 ~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
++.....=........++..++.....++..+..+.
T Consensus 144 ~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 144 QRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655554554555555555555555555555555444
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.92 E-value=28 Score=39.82 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=13.7
Q ss_pred HHHHHHhhHHHHHHHHhhC
Q 010914 440 ALKYTLCNLKWALFWFVGN 458 (497)
Q Consensus 440 AlK~lLtNlKWlLaw~~~~ 458 (497)
-||-=|-=|+-++.|+++.
T Consensus 488 ~mk~kl~elq~lv~~l~~~ 506 (617)
T PF15070_consen 488 EMKVKLLELQELVLRLVGD 506 (617)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5676677777788888853
No 135
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=85.90 E-value=5.6 Score=39.34 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 240 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 240 (497)
+...++..|+..=.++....-++|..+.++++|+.+++.+...+++
T Consensus 172 ~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 172 EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667788888888888888888888888888888777666554
No 136
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=85.85 E-value=55 Score=38.94 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
|.++..+|.....+..++.+.-...+.+++++..+|++.=++.-++.........+..+..++++..+...+.++++|++
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544555555555555554444444444444445555666667777788888888899988
Q ss_pred c
Q 010914 283 T 283 (497)
Q Consensus 283 t 283 (497)
+
T Consensus 516 ~ 516 (980)
T KOG0980|consen 516 T 516 (980)
T ss_pred H
Confidence 8
No 137
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.76 E-value=54 Score=35.11 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 170 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 230 (497)
Q Consensus 170 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 230 (497)
++|.+.+..-...|+. .++++..-.++|+.+++.|++++..|.++.+-|..-.++
T Consensus 224 eeeme~~~aeq~slkR------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKR------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHh------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555555554442 235555566677777777777777777776666554444
No 138
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=85.59 E-value=28 Score=39.13 Aligned_cols=180 Identities=20% Similarity=0.267 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------cc------------CCCHHH------HHHHHHH
Q 010914 151 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA----------RD------------VLSEAD------FLKEKLK 202 (497)
Q Consensus 151 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~----------~~------------~~~ee~------l~~e~~~ 202 (497)
+.+=.+.+-+.+|.=++.+++|.+++...-+.+..-. .. .+++.+ +.+++..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 6666677777777778888888888766554443110 00 111111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
|+..-..+...+.+-..-...+..+++++..+...++++-..++..+..+..+-....+....+...+......+++.+=
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222223333333233334566677777777777777777888888888887777777777777777777665554432
Q ss_pred ccc---CCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q 010914 283 TNV---LNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQ 335 (497)
Q Consensus 283 tNV---~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~ 335 (497)
-.+ |-+.|.-..+ .+.++. ..|..+|++-++||.-+=.+.--+.++..
T Consensus 436 PGlp~~y~~~~~~~~~-~i~~l~----~~L~~~pinm~~v~~~l~~a~~~v~~L~~ 486 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSD-EIEELS----DELNQVPINMDEVNKQLEEAEDDVETLEE 486 (560)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHH----HHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 111 1112221111 111111 01234789999999988877666555444
No 139
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=85.45 E-value=12 Score=43.81 Aligned_cols=46 Identities=33% Similarity=0.258 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 200 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 245 (497)
Q Consensus 200 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~ 245 (497)
+.+|++++.+++++.+++++.++++++..++++.+.+++++..++.
T Consensus 517 i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555554444433
No 140
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.26 E-value=33 Score=38.72 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010914 162 LDKEVDDVTRDIEAYEACLQR 182 (497)
Q Consensus 162 Ld~qle~~~~E~d~Y~~fL~~ 182 (497)
++.++..+..|.+.|..-+.+
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 444555555555555554433
No 141
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.85 E-value=23 Score=41.59 Aligned_cols=14 Identities=43% Similarity=0.404 Sum_probs=8.0
Q ss_pred cccccCcccccCCC
Q 010914 47 STRMDNSFVVLPKQ 60 (497)
Q Consensus 47 ~~~~d~s~~vl~~~ 60 (497)
-.+|-.|+||=|+-
T Consensus 126 p~~m~~s~v~~~Pv 139 (1118)
T KOG1029|consen 126 PRRMSSSPVVGPPV 139 (1118)
T ss_pred ccccCCCccCCCCc
Confidence 34566666665554
No 142
>PRK11519 tyrosine kinase; Provisional
Probab=84.84 E-value=43 Score=38.60 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
+...++.|++|+..+.++.+.-+.-|+..+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666665555555543
No 143
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.64 E-value=32 Score=34.35 Aligned_cols=8 Identities=50% Similarity=0.762 Sum_probs=4.8
Q ss_pred CCCCceee
Q 010914 410 CFKLPYKI 417 (497)
Q Consensus 410 ~~~LPY~I 417 (497)
-++||-.+
T Consensus 240 l~~LPv~~ 247 (251)
T PF11932_consen 240 LLKLPVSI 247 (251)
T ss_pred HhccCCCC
Confidence 46777544
No 144
>PRK10698 phage shock protein PspA; Provisional
Probab=84.42 E-value=46 Score=33.12 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 226 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 276 (497)
Q Consensus 226 ~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 276 (497)
..+..++.+.......-.++-..+..++..+.+....+..|.+++..+..+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555566666777777777777777777655
No 145
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=84.32 E-value=56 Score=36.45 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
.++.+.+.+...+.+...........|..++..+..++...
T Consensus 316 ~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 316 SELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444444333
No 146
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.29 E-value=17 Score=34.91 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
..+..|.+.++.+.+++.++++.|+.|...|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555444444
No 147
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.24 E-value=50 Score=33.38 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 278 (497)
++.+-..|.....+++.+..+|..+....+.+...|...=..+-.....+.-+...-..+...+..++..++..+.
T Consensus 45 aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555444444444444444444444444444554455555555566666666655443
No 148
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.85 E-value=20 Score=41.16 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=11.8
Q ss_pred HHHHHHhhc-CCCccCCcchHH
Q 010914 133 LKRAFEIAT-SQTQVEQPLCLE 153 (497)
Q Consensus 133 l~~lFdIlS-s~s~IDhPLC~e 153 (497)
.++|-+-++ .-+.++++-|-+
T Consensus 84 aa~i~eWles~~p~~~~~s~~~ 105 (861)
T KOG1899|consen 84 AARIAEWLESPSPSMSTVSCPE 105 (861)
T ss_pred HHHHHHHHhccCCCCCCccCCc
Confidence 345555554 345667776654
No 149
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.62 E-value=29 Score=42.40 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 010914 169 VTRDIEAYEACLQ 181 (497)
Q Consensus 169 ~~~E~d~Y~~fL~ 181 (497)
++++...|..-|+
T Consensus 513 l~~~~~~~~eele 525 (1317)
T KOG0612|consen 513 LEALVRQLEEELE 525 (1317)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333444333
No 150
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.52 E-value=30 Score=38.17 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010914 238 FKELEERYWQEFNNFQFQLIAHQEERDAISS 268 (497)
Q Consensus 238 L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~ 268 (497)
++++|+++=+..-..+.+..++++++.-|..
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3444444444455555555555555544433
No 151
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=83.46 E-value=45 Score=38.51 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 153 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 153 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
+=+...++.|++|+..+.++.+.-+.-|+..+.+
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777766666665543
No 152
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.37 E-value=23 Score=41.52 Aligned_cols=38 Identities=37% Similarity=0.404 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
.+|++++.+++++.+++++..+++++..++++.+.+++
T Consensus 523 ~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333
No 153
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.26 E-value=58 Score=37.18 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeecc
Q 010914 224 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINN 303 (497)
Q Consensus 224 l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTING 303 (497)
+.++++.|+......+.+=.+-|.+.-.+..+..+...+...-+..+.....+++++.+. .|-.-++. .-+=.|.+
T Consensus 424 L~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~--RIlEIv~N 499 (594)
T PF05667_consen 424 LIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTR--RILEIVKN 499 (594)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHH--HHHHHHHh
Confidence 334444444433333333446677777888888888888877777788888888888887 34333322 12334555
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHH
Q 010914 304 FRLGRLPKIPVEWDEINAAWGQACLL 329 (497)
Q Consensus 304 lRLGrlp~~~V~W~EINAAwGQ~~LL 329 (497)
+|==+ .||+-=+.-|--|
T Consensus 500 I~KQk--------~eI~KIl~DTr~l 517 (594)
T PF05667_consen 500 IRKQK--------EEIEKILSDTREL 517 (594)
T ss_pred HHHHH--------HHHHHHHHHHHHH
Confidence 55433 3555544444443
No 154
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.15 E-value=24 Score=42.26 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=15.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 245 YWQEFNNFQFQLIAHQEERDAISSKIEVS 273 (497)
Q Consensus 245 ~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 273 (497)
-.+..+.+.-...+.++|+..++-+|...
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l 354 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSL 354 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444555555555555665555444443
No 155
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.03 E-value=38 Score=31.13 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAEL 228 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El 228 (497)
+|+.+...++.++..++.....+..++
T Consensus 77 rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 77 RLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 156
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.01 E-value=51 Score=36.19 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEA-YEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 236 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~-Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 236 (497)
.+++++.-+ +.-+++|+ |+..+++++.-..++.. + .++.+++|++-.+|.+.|.++-.....+.. +..
T Consensus 136 ~~~q~esll-e~~~q~da~~qq~~~ele~~d~~~~~--d-~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~-------e~n 204 (446)
T KOG4438|consen 136 FIQQLESLL-ELRKQLDAKYQQALKELERFDEDVEE--D-EEEVKQLEENIEELNQSLLKDFNQQMSLLA-------EYN 204 (446)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccc--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 444444444 44445554 44455555432211111 1 223344454444444444444444443333 333
Q ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCC
Q 010914 237 RFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL-ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPV 314 (497)
Q Consensus 237 ~L~~eE~-~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qL-dkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V 314 (497)
.....+. .+.+..|.+.+....+++.+.+|..++-+.=..| +.|..++ ++||...+..|
T Consensus 205 ~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk-------------------~~l~k~k~~~~ 265 (446)
T KOG4438|consen 205 KMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMK-------------------DLLQKEKSAMV 265 (446)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HHHHHHHHHHH
Confidence 3333333 3788889999999899998888888776553333 1222221 23444555667
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhc
Q 010914 315 EWDEINAAWGQACLLLHTMCQYF 337 (497)
Q Consensus 315 ~W~EINAAwGQ~~LLL~tla~~l 337 (497)
+..|=-+.+|-.+=-+.++-.-+
T Consensus 266 ~l~~K~~iL~ekv~~~qti~~e~ 288 (446)
T KOG4438|consen 266 ELQEKAKILEEKVTNLQTIEKEL 288 (446)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHH
Confidence 77777777777666666665543
No 157
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.86 E-value=27 Score=29.21 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 241 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~e 241 (497)
.+||.--..+...|..|+.+.+++..+-..+..+...|.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444445555555555554444444444444444333
No 158
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=82.80 E-value=18 Score=31.13 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE--RYWQEFNNF 252 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~--~~w~e~n~~ 252 (497)
..+-++.||+|..-|.+.|+.+|++++=..++|..++.....|-..+. .||.+...-
T Consensus 5 ~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~~ 63 (84)
T PF11414_consen 5 MLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLHRE 63 (84)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCcccccccc
Confidence 356677899999999999999999999999999999998888876665 666665433
No 159
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=82.69 E-value=33 Score=38.33 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=8.0
Q ss_pred eeeeecCCeeeeccccCCC
Q 010914 290 FPIWHDGEFGTINNFRLGR 308 (497)
Q Consensus 290 F~I~hdG~fGTINGlRLGr 308 (497)
.++-.|.--|-|=| |=||
T Consensus 208 v~lp~d~~kgriig-reGr 225 (514)
T TIGR03319 208 VNLPNDEMKGRIIG-REGR 225 (514)
T ss_pred EEcCChhhhccccC-CCcc
Confidence 34444444444444 3443
No 160
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.60 E-value=47 Score=41.30 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~ 181 (497)
++.+++.++.+.+=+..|..|.+
T Consensus 239 le~l~~~~~~l~~i~~~y~~y~~ 261 (1353)
T TIGR02680 239 LERLEALERALRNFLQRYRRYAR 261 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444665555
No 161
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=82.54 E-value=29 Score=37.66 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 157 VLSDKLDKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 157 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
..+..+..++.+..++...+..-+++|+.+
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999988888898888888753
No 162
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.41 E-value=28 Score=29.11 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 206 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.-..|..++++|+.+...+..+...|+.+-..|.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555554444443
No 163
>PRK00106 hypothetical protein; Provisional
Probab=82.40 E-value=46 Score=37.55 Aligned_cols=18 Identities=33% Similarity=0.339 Sum_probs=7.8
Q ss_pred eeeeecCCeeeeccccCCC
Q 010914 290 FPIWHDGEFGTINNFRLGR 308 (497)
Q Consensus 290 F~I~hdG~fGTINGlRLGr 308 (497)
+++-.|.--|-|=| |=||
T Consensus 229 v~lp~demkGriIG-reGr 246 (535)
T PRK00106 229 VHLPDDNMKGRIIG-REGR 246 (535)
T ss_pred EEcCChHhhcceeC-CCcc
Confidence 34444444444444 4443
No 164
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=82.32 E-value=85 Score=35.01 Aligned_cols=30 Identities=10% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
++.+.....+++..+++-.+++..+.+.|-
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666665555553
No 165
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.27 E-value=5.2 Score=36.07 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.4
Q ss_pred cCCCceeeeecCCeee
Q 010914 285 VLNDAFPIWHDGEFGT 300 (497)
Q Consensus 285 V~Nd~F~I~hdG~fGT 300 (497)
+|++=|||.+ -+||.
T Consensus 78 LY~EGFHICn-~~yG~ 92 (110)
T PRK13169 78 LYQEGFHICN-LHYGS 92 (110)
T ss_pred HHHcCceecH-HHhCC
Confidence 6999999988 57765
No 166
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.20 E-value=49 Score=38.23 Aligned_cols=36 Identities=8% Similarity=-0.030 Sum_probs=21.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010914 248 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 248 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 283 (497)
.....+.++.+++.+.+..+..|+...+..+.++=.
T Consensus 364 ~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666676666555555433
No 167
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.09 E-value=23 Score=29.55 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
|..|-+.|.+........|+.|..+...+
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~ 45 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKEL 45 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333
No 168
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.04 E-value=15 Score=40.61 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
++++.++..|+++.+.+.+|-+.|+++...+++. --+.++-...++++++++++.+...++..|+.|.+
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~------i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQ------IQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444444433333322 22334444555666777777777777777766654
No 169
>PRK12704 phosphodiesterase; Provisional
Probab=81.71 E-value=39 Score=37.81 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=5.5
Q ss_pred eeeeecCCeeeec
Q 010914 290 FPIWHDGEFGTIN 302 (497)
Q Consensus 290 F~I~hdG~fGTIN 302 (497)
+++-.|.--|-|=
T Consensus 214 v~lp~d~mkgrii 226 (520)
T PRK12704 214 VNLPNDEMKGRII 226 (520)
T ss_pred eecCCchhhccee
Confidence 3444444444443
No 170
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.56 E-value=32 Score=36.30 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=7.0
Q ss_pred HHHHHHHHHhcc
Q 010914 175 AYEACLQRLEGE 186 (497)
Q Consensus 175 ~Y~~fL~~L~~~ 186 (497)
.|-.||+.++..
T Consensus 94 ~yNdYLE~vEdi 105 (309)
T TIGR00570 94 EYNDYLEEVEDI 105 (309)
T ss_pred HHHHHHHHHHHH
Confidence 466666666543
No 171
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.50 E-value=1e+02 Score=35.13 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCCCcchhhHHHHHHHH---HhhcCCCccCCcchHHHHHHHHHHHH
Q 010914 120 QPNNSGFHSTITVLKRAF---EIATSQTQVEQPLCLECMRVLSDKLD 163 (497)
Q Consensus 120 ~~~~~~ls~~i~~l~~lF---dIlSs~s~IDhPLC~eC~d~Lle~Ld 163 (497)
+.+...|+..|+.+-.+- -+|- .+..-|--+||..+|.+..+
T Consensus 525 QE~~~~f~k~i~s~lqrsva~paL~--~~~SsP~~~E~~~lL~~a~~ 569 (741)
T KOG4460|consen 525 QETPDSFEKHIRSILQRSVANPALL--KASSAPPPEECLQLLSRATQ 569 (741)
T ss_pred hhcCCcHHHHHHHhhhhhcCChhcc--ccccCCCcHHHHHHHHHHHH
Confidence 344555666666544331 1111 12234558899999877554
No 172
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.49 E-value=67 Score=41.10 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
++++.+.+++....+.+.|..-|+.+.....+... -.....+.-..+..+.++.++...|+.+..-|..++...-.+
T Consensus 130 ~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ek 207 (1822)
T KOG4674|consen 130 LLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEK 207 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45556666777777777777777766532210000 000111111234455555555555555555555544444333
No 173
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=81.31 E-value=63 Score=33.76 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=23.1
Q ss_pred cchhhHHHHHHHHHhhcCCCccCCcchHHHHH
Q 010914 125 GFHSTITVLKRAFEIATSQTQVEQPLCLECMR 156 (497)
Q Consensus 125 ~ls~~i~~l~~lFdIlSs~s~IDhPLC~eC~d 156 (497)
-+++.|.-+...=++.|.-++--..+|.=-..
T Consensus 54 ~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~ 85 (338)
T KOG3647|consen 54 LIGDKIEELRKARELATDLTQRGTTICEMLSK 85 (338)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 48888888877777777777777777764433
No 174
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.26 E-value=32 Score=40.24 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=14.0
Q ss_pred CCcchhhHHHHHHHHHhhcC
Q 010914 123 NSGFHSTITVLKRAFEIATS 142 (497)
Q Consensus 123 ~~~ls~~i~~l~~lFdIlSs 142 (497)
-++||..+..+..++.-++.
T Consensus 383 LStfS~~m~~~~~il~~~~~ 402 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKTTE 402 (771)
T ss_pred hhHHHHHHHHHHHHHHhcCC
Confidence 35688888888877765543
No 175
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.25 E-value=86 Score=34.00 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 256 LIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 256 l~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
+.+...+...+..++..++.++..++.
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~ 264 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTK 264 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 334444555666666666666665543
No 176
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.20 E-value=67 Score=33.88 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETE------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 256 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE------------------~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql 256 (497)
.+.+.+..||+|-..|+.|...|. ++......++..|..++....++-.+.-.+...+..++
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666655543 22233344555555555554444445556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010914 257 IAHQEERDAISSKIEVSQAHL 277 (497)
Q Consensus 257 ~~~~ee~~sl~~q~~~~~~qL 277 (497)
...+....++-..-+-.+.+|
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 666655555544444444444
No 177
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.13 E-value=27 Score=38.49 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 249 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 249 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
...+..++.++..++..++.++..++++|+.|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444455555555666666666667776654
No 178
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.02 E-value=63 Score=37.79 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE---ERYWQEFNNFQFQLIAHQEERDAISSKIE 271 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE---~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 271 (497)
++.++...+|.+...|..+|+++.--..++-++..+||+|--.|+.+= ++---+|-.++.++..+++|...++.|++
T Consensus 66 ~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 66 ELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777777777765555554444444444333332111 12335677888888889999888888776
Q ss_pred HH
Q 010914 272 VS 273 (497)
Q Consensus 272 ~~ 273 (497)
-+
T Consensus 146 e~ 147 (717)
T PF09730_consen 146 EA 147 (717)
T ss_pred HH
Confidence 55
No 179
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.87 E-value=26 Score=30.90 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 236 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 236 (497)
..|+...+.++..++.++++.+.+..++.+++.++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666665555555555555443
No 180
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.81 E-value=54 Score=36.64 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 272 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le---~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~ 272 (497)
+...+..+..-.++--..++++-...+++.+++..++ .+.+.++++.++++..+...-.++... |...-.+ .
T Consensus 306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~---R~~~a~~--l 380 (563)
T TIGR00634 306 IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI---RRKAAER--L 380 (563)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--H
Confidence 3334444444444433455566666666666666654 345556666666677666665555432 2222222 2
Q ss_pred HHHHHHHHhhcccCCCceeeee
Q 010914 273 SQAHLELLKRTNVLNDAFPIWH 294 (497)
Q Consensus 273 ~~~qLdkL~ktNV~Nd~F~I~h 294 (497)
...--..|+..+.-+..|+|..
T Consensus 381 ~~~v~~~l~~L~m~~~~f~v~~ 402 (563)
T TIGR00634 381 AKRVEQELKALAMEKAEFTVEI 402 (563)
T ss_pred HHHHHHHHHhCCCCCcEEEEEE
Confidence 2233466777888888998865
No 181
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.79 E-value=47 Score=37.34 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 266 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl 266 (497)
.+|..+|..+..++.+++..+-.|++++.+-|......-..+..++++.-..|-+..-.+.+.++|+..+
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777777777766665555443333333333333333333344445556666555
No 182
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=80.52 E-value=37 Score=29.43 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 163 DKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 163 d~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
..++..++.+++....-+.....+ -..+...+.+|+.|..+..++.-.+++....+..|++.|..
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~------~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKE------LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345555555555554444433221 12234445566666666666666666666666666666643
No 183
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=80.10 E-value=58 Score=32.22 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
|+.+..-++..|.+-+....+|.+++.....+..+....- ...+.+...+..++....+|+...+.++..|.+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q-------~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQ-------QQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555444443333332221 223344455556666666677777777777665
Q ss_pred c
Q 010914 283 T 283 (497)
Q Consensus 283 t 283 (497)
.
T Consensus 183 q 183 (192)
T PF11180_consen 183 Q 183 (192)
T ss_pred H
Confidence 4
No 184
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.10 E-value=78 Score=38.86 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=12.3
Q ss_pred CccceeeEEecCCC-CchhhHHHHHHHh
Q 010914 420 DKVENYSITQSFNK-QENWTKALKYTLC 446 (497)
Q Consensus 420 dkIgg~SIkl~~n~-~e~WTkAlK~lLt 446 (497)
+.|.+..|++...- +-++=+.+|-+-.
T Consensus 1026 ~~i~~i~v~i~s~i~~l~~w~~Lk~F~~ 1053 (1201)
T PF12128_consen 1026 EAISDIEVRIRSSIDELEFWKPLKQFSD 1053 (1201)
T ss_pred cccceeEEEEEechhhhccHHHHHHHHH
Confidence 45556666663222 2233344444433
No 185
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.04 E-value=64 Score=33.41 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
..++.+|..|+..|+.-..|.++..+.|..|
T Consensus 186 ~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 186 NNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333
No 186
>PRK11281 hypothetical protein; Provisional
Probab=79.80 E-value=49 Score=40.51 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
+.|+++++++.++.....+-|+++++
T Consensus 83 ~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 83 EQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 34566666666666666666666654
No 187
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.68 E-value=21 Score=39.38 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+.+-...+.++..++..++.+++.+.++++++|.+++.++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333445555555555555555555555555555444433
No 188
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=79.67 E-value=32 Score=29.97 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
..|+...+.+..+++.++++.+.+..++.+++.++.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666666666666666555443
No 189
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=79.35 E-value=70 Score=37.35 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=10.9
Q ss_pred cchhhHHHHHHHHHhh
Q 010914 125 GFHSTITVLKRAFEIA 140 (497)
Q Consensus 125 ~ls~~i~~l~~lFdIl 140 (497)
-+..||.++.+=|-.+
T Consensus 406 e~~QRva~lEkKvqa~ 421 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQAL 421 (961)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3667777777777554
No 190
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.34 E-value=1.1e+02 Score=34.07 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 211 EAAIEETEKQNAEVNAELKELELKSKRF----------------KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 211 ~~eL~~LE~e~~~l~~El~~le~e~~~L----------------~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
..+|+++|.+...+.+|++.-+.....| .+--.++-.......-+.....++...|..+....+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666433333322 111122333333344445555666666666666666
Q ss_pred HHHH
Q 010914 275 AHLE 278 (497)
Q Consensus 275 ~qLd 278 (497)
..|+
T Consensus 424 e~L~ 427 (521)
T KOG1937|consen 424 EALN 427 (521)
T ss_pred HHHh
Confidence 5554
No 191
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.17 E-value=99 Score=36.98 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=7.0
Q ss_pred eccccCCCC
Q 010914 301 INNFRLGRL 309 (497)
Q Consensus 301 INGlRLGrl 309 (497)
||.++|-+-
T Consensus 563 i~ql~l~~~ 571 (980)
T KOG0980|consen 563 INQLELDSS 571 (980)
T ss_pred HHHhhcccc
Confidence 888888764
No 192
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.07 E-value=24 Score=29.18 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
+..+..|..+++.+.+....|..-++.|..+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~E 34 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRE 34 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888888887654
No 193
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=79.07 E-value=17 Score=39.48 Aligned_cols=87 Identities=16% Similarity=0.306 Sum_probs=44.5
Q ss_pred CCccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 143 QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 222 (497)
Q Consensus 143 ~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~ 222 (497)
+|.+.--+........++.|+.+++....+.......+.++++.........+..+...++.+....+.+++++++.+..
T Consensus 320 ~T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 320 KTEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred cEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333324445566677777777777777777777666542211111223334444455555555555555555554
Q ss_pred HHHHHHH
Q 010914 223 EVNAELK 229 (497)
Q Consensus 223 ~l~~El~ 229 (497)
++.++++
T Consensus 400 ~l~~~l~ 406 (451)
T PF03961_consen 400 ELKEELE 406 (451)
T ss_pred HHHHHHH
Confidence 4444443
No 194
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=78.98 E-value=76 Score=32.02 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 162 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 225 (497)
Q Consensus 162 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 225 (497)
++..+..+.+-++.|..-.+..+.-.....+..++.+-..++++-.......++.+++......
T Consensus 118 ~q~~~~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~ 181 (261)
T cd07674 118 LQVQSQHLQKSRENYHSKCVEQERLRREGVPQKELEKAELKTKKAAESLRGSVEKYNRARGDFE 181 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666655444332211233444444334444444444444555544444443
No 195
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=78.90 E-value=58 Score=30.60 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
+...|+.+...+..++..++.+...+..+-..|
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 196
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.87 E-value=57 Score=39.33 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=12.0
Q ss_pred CchhhHHHHHHHhhHH
Q 010914 434 QENWTKALKYTLCNLK 449 (497)
Q Consensus 434 ~e~WTkAlK~lLtNlK 449 (497)
..+=+.|..+-++|++
T Consensus 563 ~~~~~e~~~~~~~~~r 578 (1072)
T KOG0979|consen 563 KREVEEAIVEVLQNIR 578 (1072)
T ss_pred cccccHHHHHHHhccc
Confidence 3456778888888887
No 197
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=78.86 E-value=1.4e+02 Score=34.95 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----------H---HHHHHHHhHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KEL----------E---ERYWQEFNNFQFQLIA 258 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L----~~e----------E---~~~w~e~n~~q~ql~~ 258 (497)
+.+.+..++........+|..+.++.+.|.+++...+.+.+.. +.+ | ...|.+.-.+......
T Consensus 174 Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~ 253 (739)
T PF07111_consen 174 LEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQH 253 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHH
Confidence 3344444444444445566666666666666665554443332 111 0 1124555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 259 HQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 259 ~~ee~~sl~~q~~~~~~qLdkL 280 (497)
+++++++|....+..+..+..|
T Consensus 254 L~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 254 LQEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999988887777665554
No 198
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=78.85 E-value=79 Score=37.57 Aligned_cols=52 Identities=29% Similarity=0.368 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhhcCCCccCCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 128 STITVLKRAFEIATSQTQVEQPLCLECMRV-----LSDKLDKEVDDVTRDIEAYEACL 180 (497)
Q Consensus 128 ~~i~~l~~lFdIlSs~s~IDhPLC~eC~d~-----Lle~Ld~qle~~~~E~d~Y~~fL 180 (497)
.+.+++.++- -||++-+.=-|+=..|+.+ -++.+-+++++..++.++...-|
T Consensus 226 ~tq~vl~ev~-QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L 282 (1265)
T KOG0976|consen 226 NTQKVLKEVM-QLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVL 282 (1265)
T ss_pred HHHHHHHHHH-HHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555553 4677777888999999754 23333344555555554444433
No 199
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=78.84 E-value=77 Score=38.93 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=6.8
Q ss_pred CccceeeEEec
Q 010914 420 DKVENYSITQS 430 (497)
Q Consensus 420 dkIgg~SIkl~ 430 (497)
|.+-|++|.+.
T Consensus 581 dslyGl~LdL~ 591 (1201)
T PF12128_consen 581 DSLYGLSLDLS 591 (1201)
T ss_pred cccceeEeehh
Confidence 46667666663
No 200
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=78.80 E-value=38 Score=31.07 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCCCH-HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEAR--DVLSE-ADF-------------LKEKLKIEEEERKLEAAIEETEKQNAE 223 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~--~~~~e-e~l-------------~~e~~~Le~EE~~L~~eL~~LE~e~~~ 223 (497)
++|+.++..+.-+++.+..-|+.++.--. +.+++ +.+ .+-.+.|++..+.|+.+++.|+++.+.
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~ 95 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEK 95 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655432100 00111 111 111233445555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 010914 224 VNAELKELELKS 235 (497)
Q Consensus 224 l~~El~~le~e~ 235 (497)
++.++++|+.++
T Consensus 96 l~e~l~eLq~~i 107 (119)
T COG1382 96 LQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 201
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=78.64 E-value=70 Score=31.39 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHhHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK-------ELEER---YWQEFNNFQFQLIAHQEERDAISS 268 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~-------~eE~~---~w~e~n~~q~ql~~~~ee~~sl~~ 268 (497)
.+..+..|-.+|.+-|..++.+.+++..++...+.....|. ..+++ .=.++..+...+...+.||+.+..
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555554443333322 11211 112333344445555566666665
Q ss_pred HHHHH
Q 010914 269 KIEVS 273 (497)
Q Consensus 269 q~~~~ 273 (497)
+++.+
T Consensus 129 kf~~~ 133 (201)
T PF13851_consen 129 KFESA 133 (201)
T ss_pred HHHHH
Confidence 55544
No 202
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.50 E-value=1.2e+02 Score=36.92 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 156 RVLSDKLDKEVDDVTRDIEA 175 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~ 175 (497)
+.|+..+-.+++.+.+|..+
T Consensus 403 ~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677777766666554
No 203
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=78.46 E-value=56 Score=36.17 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 010914 254 FQLIAHQEERDAISSKIEVSQAHLELLKR-TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLH 331 (497)
Q Consensus 254 ~ql~~~~ee~~sl~~q~~~~~~qLdkL~k-tNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~ 331 (497)
.+..-++.+|+..+.|+..|..-.++|+| .+-+=-+||.-|... +..+.-.-=|--.|+|.+.-+|.
T Consensus 347 ~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss-----------lDdVD~kIleak~al~evtt~lr 414 (575)
T KOG4403|consen 347 VEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS-----------LDDVDHKILEAKSALSEVTTLLR 414 (575)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc-----------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777888889999999999975 455556888877654 22323333455667777655543
No 204
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=78.44 E-value=32 Score=35.58 Aligned_cols=153 Identities=23% Similarity=0.329 Sum_probs=83.0
Q ss_pred CcchhhHHHHHHHH----HhhcC---CCccCCcchHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcccccC--CC
Q 010914 124 SGFHSTITVLKRAF----EIATS---QTQVEQPLCLECMRVLSDKLDKE-VDDV-TRDIEAYEACLQRLEGEARDV--LS 192 (497)
Q Consensus 124 ~~ls~~i~~l~~lF----dIlSs---~s~IDhPLC~eC~d~Lle~Ld~q-le~~-~~E~d~Y~~fL~~L~~~~~~~--~~ 192 (497)
.-..+.+..+..|| ||.++ ++..=.-.+.+|-=.+++.|+.. +.++ ..+...-.+.|..|+.-.-++ +.
T Consensus 93 ~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR 172 (269)
T PF05278_consen 93 QVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLR 172 (269)
T ss_pred EEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 34677788889999 78865 45555557889999999999764 3333 334444455566555322110 00
Q ss_pred --HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 010914 193 --EADFLK------EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 264 (497)
Q Consensus 193 --ee~l~~------e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~ 264 (497)
-+++.+ .....+.+.+.....|+..+.|.+....++.+.+++.+++.+.. .+..-.|.+++.++-
T Consensus 173 ~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l~~~~~ 245 (269)
T PF05278_consen 173 SKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGELEMEST 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 011111 11122333333444444444444444444444444444443332 334445666777777
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 010914 265 AISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 265 sl~~q~~~~~~qLdkL~kt 283 (497)
.+...+.++....++..--
T Consensus 246 ~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 246 RLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 7777777777777766443
No 205
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=78.27 E-value=44 Score=31.56 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cC--------------C--------------CHHHHHHHHHH
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DV--------------L--------------SEADFLKEKLK 202 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-----~~--------------~--------------~ee~l~~e~~~ 202 (497)
+..++.|+.++..+..-+..++.+++.|+.-.. +. . -+.++.+..+-
T Consensus 19 ~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~ 98 (145)
T COG1730 19 QSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEF 98 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHH
Confidence 446677788877777777777777777652110 00 0 01223444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 240 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 240 (497)
|++..++|.+.++.++.+.+++.+.+..++.+...+..
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666555555443
No 206
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=78.02 E-value=80 Score=36.62 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 263 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~ 263 (497)
++..+....+++..|..+...+.+++..+..+...+.++-++.|+..+..+.++.+.....
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 292 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENL 292 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566777777777777777777777777777788888888766665544333
No 207
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.87 E-value=13 Score=34.91 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
.+..+..+|..++.+++++...+..|+..|
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 208
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.84 E-value=79 Score=34.96 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc
Q 010914 153 ECMRVLSDKLDKEV----DDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 153 eC~d~Lle~Ld~ql----e~~~~E~d~Y~~fL~~L~~ 185 (497)
.=...|-++++++- +.+..|-+..+..+-+++.
T Consensus 257 hR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eR 293 (502)
T KOG0982|consen 257 HRYHMLEEQRREQELRAEESLSEEERRHREILIKKER 293 (502)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555442 2223344445555544443
No 209
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=77.81 E-value=44 Score=33.34 Aligned_cols=76 Identities=18% Similarity=0.387 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 171 RDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFN 250 (497)
Q Consensus 171 ~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n 250 (497)
.|.+.|....++|+... ++-+-....+++-..+...++.|++.++.+.++-. +........+-+-|-++++.+.
T Consensus 111 ~~~k~i~k~RKkLe~rR---LdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~---E~a~~~M~~i~~~e~e~~~~L~ 184 (215)
T cd07593 111 AEMKEYHSARKKLESRR---LAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESS---EDVEARMVAIKESEADQYRDLT 184 (215)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcChHHHHHHH
Confidence 35556666666665432 11111121222222333445555555555444332 2333344445555556677666
Q ss_pred HH
Q 010914 251 NF 252 (497)
Q Consensus 251 ~~ 252 (497)
.|
T Consensus 185 ~l 186 (215)
T cd07593 185 DL 186 (215)
T ss_pred HH
Confidence 66
No 210
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.74 E-value=25 Score=35.97 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCC
Q 010914 258 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLP 310 (497)
Q Consensus 258 ~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp 310 (497)
.+.+.+..+-|.+..+.++.-...-.-|-+++ .|.+.|+|-||||-|+ ..|
T Consensus 136 v~~~dl~~viNeL~~sGAEaIsIn~~RI~~~t-~Ir~v~g~~~vdg~~~-~~P 186 (247)
T COG3879 136 VHDDDLQAVINELNISGAEAISINGQRIGSNT-TIRCVGGTLLVDGRRL-SAP 186 (247)
T ss_pred cCHHHHHHHHHHHHhccchheeECCEEeecce-EEEecCCeEEECCeec-CCC
Confidence 35555566666666666555444444444444 3667789999999999 443
No 211
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=77.71 E-value=9.2 Score=41.82 Aligned_cols=50 Identities=8% Similarity=0.166 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010914 217 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 269 (497)
Q Consensus 217 LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 269 (497)
+.++...++.+++.++. +++..|++||+.|..++.-+..++.....|..|
T Consensus 411 l~~~i~~l~~~i~~~~~---rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 411 VNKTLKKLTKQYNAVSD---SIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445554444443 456788899999999988776665555444443
No 212
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.58 E-value=87 Score=31.90 Aligned_cols=56 Identities=11% Similarity=0.401 Sum_probs=29.2
Q ss_pred chhhHHHHHHHHHhhcC-CCccCCcc-----hHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 010914 126 FHSTITVLKRAFEIATS-QTQVEQPL-----CLE-CMRVLSDKLDK---EVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 126 ls~~i~~l~~lFdIlSs-~s~IDhPL-----C~e-C~d~Lle~Ld~---qle~~~~E~d~Y~~fL~ 181 (497)
++.-......+|..+|+ ..++.-|| |.| |+..+.++++. .+.+..+|.-.|..-++
T Consensus 87 y~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK 152 (243)
T cd07666 87 YFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLM 152 (243)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777764 55677775 333 33344443333 34444444444444443
No 213
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.57 E-value=1.1e+02 Score=34.20 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 249 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 249 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 280 (497)
....+..|.....+....++--..+..++.-|
T Consensus 409 i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 409 IKTAEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333344333
No 214
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.56 E-value=63 Score=32.98 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=5.9
Q ss_pred HHHHHHhhcC
Q 010914 133 LKRAFEIATS 142 (497)
Q Consensus 133 l~~lFdIlSs 142 (497)
..+.|+-|++
T Consensus 75 A~kf~eeLrg 84 (290)
T COG4026 75 AEKFFEELRG 84 (290)
T ss_pred HHHHHHHHHH
Confidence 4456666665
No 215
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=77.53 E-value=1e+02 Score=34.41 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 238 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 276 (497)
Q Consensus 238 L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 276 (497)
.+..|++|..-.-+||.--.+-.+||+.|+.+++-.-.|
T Consensus 487 Ke~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 487 KETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777888888777655443
No 216
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.51 E-value=1.3e+02 Score=33.84 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQL 256 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le---~e~~~L~~eE~~~w~e~n~~q~ql 256 (497)
|..|....+.||+.|..+...|..+++... .+.+....+-++..++++...-+.
T Consensus 335 l~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~ 391 (622)
T COG5185 335 LKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQS 391 (622)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 444444445555555555555555554432 223333444445666665554443
No 217
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=77.39 E-value=14 Score=31.26 Aligned_cols=76 Identities=29% Similarity=0.377 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGEARD---------VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~---------~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
.+..++..++.+.+....-++.|..-..+ .+-..+...-...|+...+.+..+++.++++...+..++.++
T Consensus 16 ~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 16 QLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555432110 000011233345567777777778888888777777777777
Q ss_pred HHHHH
Q 010914 232 ELKSK 236 (497)
Q Consensus 232 e~e~~ 236 (497)
+.+..
T Consensus 96 ~~~l~ 100 (106)
T PF01920_consen 96 KKKLY 100 (106)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 218
>PRK12704 phosphodiesterase; Provisional
Probab=77.29 E-value=1.3e+02 Score=33.78 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 010914 216 ETEKQNAEVN 225 (497)
Q Consensus 216 ~LE~e~~~l~ 225 (497)
.|++...+|+
T Consensus 104 ~Lekke~eL~ 113 (520)
T PRK12704 104 LLEKREEELE 113 (520)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 219
>PRK10869 recombination and repair protein; Provisional
Probab=77.29 E-value=1.3e+02 Score=33.83 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 010914 213 AIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 289 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le---~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~ 289 (497)
.++++-.-.+++.+++..++ .....|+++.++.+..+...-.+|. ..|...-.++.. .=...|+..+.=+..
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS---~~R~~aA~~l~~--~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH---QSRQRYAKELAQ--LITESMHELSMPHGK 392 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHHHHHcCCCCcE
Confidence 44455555555555555553 3344444444444444444443332 223222222222 224667888888999
Q ss_pred eeeeec
Q 010914 290 FPIWHD 295 (497)
Q Consensus 290 F~I~hd 295 (497)
|+|...
T Consensus 393 f~v~~~ 398 (553)
T PRK10869 393 FTIDVK 398 (553)
T ss_pred EEEEEe
Confidence 998863
No 220
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=77.03 E-value=63 Score=36.92 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
++.|+++++++..++..+...++.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 221
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=76.69 E-value=36 Score=29.46 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
...++..+-++.+.+..+++.+..++..+.+++..+..
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34566677788888888888888888888888877755
No 222
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=76.61 E-value=83 Score=31.18 Aligned_cols=44 Identities=30% Similarity=0.433 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
+.++...+|.|-..|..++..|+.+...+..+...++.....|.
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 44444556666666777777777766666666666666655553
No 223
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=76.42 E-value=39 Score=30.67 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
+.+.+.-|+...+.+...++.++++.+.+.+++..+.....++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666666666666665555555554443
No 224
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=76.35 E-value=1.5e+02 Score=35.20 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~ 181 (497)
+.+..++.....|..+-..-|+
T Consensus 290 d~~~~eL~rk~~E~~~~qt~l~ 311 (775)
T PF10174_consen 290 DRLKLELSRKKSELEALQTRLE 311 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 225
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=76.04 E-value=92 Score=33.84 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 157 VLSDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 157 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
...+.|++|+..++++.+.-+.-|....
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665555554443
No 226
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=75.69 E-value=18 Score=29.51 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+.+|+.+....-..+...|.+.++...++.++|..|+.+.+++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555556666777777777777777777777666554
No 227
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.60 E-value=1.5e+02 Score=33.51 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=18.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 246 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 246 w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
-.....++.++..+.+..+++...-..|...|++++
T Consensus 385 ~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~ 420 (560)
T PF06160_consen 385 EEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLK 420 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544445555555554
No 228
>PRK06798 fliD flagellar capping protein; Validated
Probab=75.48 E-value=10 Score=41.34 Aligned_cols=51 Identities=8% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010914 214 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 267 (497)
Q Consensus 214 L~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~ 267 (497)
.+.++.+...++.+++.++. +++..|++||+.|+.++..+..++.+...+.
T Consensus 381 ~~~l~~~i~~l~~~~~~~e~---rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~ 431 (440)
T PRK06798 381 SKSIDNRVSKLDLKITDIDT---QNKQKQDNIVDKYQKLESTLAALDSQLKTIK 431 (440)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543 3567788999999999888876655444443
No 229
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=75.38 E-value=93 Score=37.11 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeee
Q 010914 239 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIW 293 (497)
Q Consensus 239 ~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~ 293 (497)
-..|++|-.+...+.-.+.+...+++++.++++.....+-.-+.--+.-+-|...
T Consensus 994 aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~ 1048 (1424)
T KOG4572|consen 994 ARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKAL 1048 (1424)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhc
Confidence 3445556666666777777777777778787777766665555555555555543
No 230
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=75.09 E-value=16 Score=39.63 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 205 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 280 (497)
++.++|.++++++..+.+++++.+..++.... ......+.-..+..+...+..+.++...++.++...+.++++.
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444455555555555444444443211 1111112234445555555666666667777777777777766
No 231
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.04 E-value=2e+02 Score=34.84 Aligned_cols=69 Identities=13% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELEL--KSKRFKELEERYWQE-FNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~--e~~~L~~eE~~~w~e-~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
|+.|..+.++|.+++..-.++...|+.+... |...|+.+ .-.+ -..+|.++...++..+++..-++...
T Consensus 281 Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKE---mAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 281 LQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKE---MAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555432 22233321 1111 12455556556666665555544443
No 232
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.91 E-value=49 Score=32.20 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
..++.+++.+.++++....-+..++..-.. . +....-..|...+.+++++|+++.+++.+++..+
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~------~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEE------A-KKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544322100 0 0000011344445566666666666666655543
No 233
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=74.67 E-value=1.4e+02 Score=33.25 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEA 178 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~ 178 (497)
+++.++...+..+.|...|..
T Consensus 222 ~l~l~~~~~~~~~~el~~Yk~ 242 (511)
T PF09787_consen 222 QLELLKAEGESEEAELQQYKQ 242 (511)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 334444444445556666663
No 234
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.61 E-value=36 Score=33.08 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
++....+|.++++.++.+.+++.+++...
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555444444444
No 235
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.22 E-value=1.2e+02 Score=31.89 Aligned_cols=83 Identities=13% Similarity=0.250 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 275 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 275 (497)
+.++.+.+..+-..+-.++.+|-.+-.+.-.+|..+-.+...+...=..|..++-.+..+..++.++.+.+.+.|.-...
T Consensus 163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555556666666666666666666655555554444
Q ss_pred HHH
Q 010914 276 HLE 278 (497)
Q Consensus 276 qLd 278 (497)
-+.
T Consensus 243 ~ik 245 (294)
T COG1340 243 KIK 245 (294)
T ss_pred HHH
Confidence 333
No 236
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=74.09 E-value=1.2e+02 Score=31.78 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=16.8
Q ss_pred CCccccchhHHHHHHHHHHHHHH
Q 010914 371 NLFWSTRYDKAMTLFLSCLKDFA 393 (497)
Q Consensus 371 ~lf~~~kFD~AM~afL~cl~q~~ 393 (497)
+.+|-++|+.+-.++++.+.+-.
T Consensus 260 ~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 260 NQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 36677888888888888776643
No 237
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=73.81 E-value=1.7e+02 Score=33.48 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010914 204 EEEERKLEAAIEETEKQNAEVNAELKELEL-------KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 268 (497)
Q Consensus 204 e~EE~~L~~eL~~LE~e~~~l~~El~~le~-------e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~ 268 (497)
+.+++.+.++++.|+++..+.+.++..... +..+-++...---+++...+.++.++|++.+..+.
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~ 484 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKD 484 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888777776666655432 22222222223445666677777777665554443
No 238
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=73.78 E-value=58 Score=28.00 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELK 229 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~ 229 (497)
||++|..+...+.++..
T Consensus 26 EieELKekn~~L~~e~~ 42 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 239
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.46 E-value=53 Score=29.70 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
+++..+-+..+|+.+|++.+.+...+.+++.++
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555444444444444433
No 240
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.24 E-value=1.7e+02 Score=35.95 Aligned_cols=15 Identities=33% Similarity=0.111 Sum_probs=10.5
Q ss_pred CChHHHHHHHHHHHH
Q 010914 314 VEWDEINAAWGQACL 328 (497)
Q Consensus 314 V~W~EINAAwGQ~~L 328 (497)
..-.|+|.+++|...
T Consensus 261 ~~~~~~N~~Ls~~L~ 275 (1109)
T PRK10929 261 VAQFKINRELSQALN 275 (1109)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455678888887654
No 241
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.16 E-value=89 Score=35.41 Aligned_cols=105 Identities=16% Similarity=0.283 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCCceeeeec
Q 010914 223 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV-------LNDAFPIWHD 295 (497)
Q Consensus 223 ~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV-------~Nd~F~I~hd 295 (497)
.+...++.++..+...+..-.++-..++.+..+-.+..+.+..+..++.-... .+.|.|+ +...|+++|.
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR---~mek~nLPGlPe~~l~l~~~~~~~ 455 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR---YMEKSNLPGLPETFLSLFFTAGHE 455 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCCcHHHHHHHHhhhhH
Confidence 44455555555555555555566666666666655555555555555444443 3445554 3345666664
Q ss_pred CCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 010914 296 GEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 336 (497)
Q Consensus 296 G~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~ 336 (497)
=. .+++ +|++ +|+.-..+++-|-++.-.++++...
T Consensus 456 i~-~l~~--eLse---~pinm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 456 IQ-DLMK--ELSE---VPINMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred HH-HHHH--HHhh---cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1222 3343 5889999999999998888766543
No 242
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.98 E-value=2.2e+02 Score=34.46 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=20.6
Q ss_pred CcchhhHHHHHHHHHhhcCCCccCCc
Q 010914 124 SGFHSTITVLKRAFEIATSQTQVEQP 149 (497)
Q Consensus 124 ~~ls~~i~~l~~lFdIlSs~s~IDhP 149 (497)
-.|-.+++-|+.=.+.|-.+-.=||-
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR~EDk~ 252 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKRAEDKA 252 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 34888888888888888888777775
No 243
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.57 E-value=33 Score=36.65 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
+++.++.+.+.+..++|..-..+|+++.
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~~~~ 255 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLVAMK 255 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHH
Confidence 3333334444444443333333333333
No 244
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=72.55 E-value=52 Score=33.42 Aligned_cols=6 Identities=0% Similarity=0.080 Sum_probs=2.3
Q ss_pred HHHHHH
Q 010914 166 VDDVTR 171 (497)
Q Consensus 166 le~~~~ 171 (497)
++.++.
T Consensus 82 l~~a~a 87 (334)
T TIGR00998 82 LAKAEA 87 (334)
T ss_pred HHHHHH
Confidence 333333
No 245
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.34 E-value=1.1e+02 Score=34.92 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 153 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 153 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
+-+..+-|++=+.-+-+..|.+....-|+...++.-. .-.++.+|.+++++-..+|++.++++-...+.+.+-+++|.
T Consensus 566 ~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ--~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~ 643 (741)
T KOG4460|consen 566 RATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQ--DLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLL 643 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555666555566666666666655544432210 01233344444555555555555555444444444444442
Q ss_pred H----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 233 L----KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 279 (497)
Q Consensus 233 ~----e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 279 (497)
. +...+-.-|..| +.+++..-++.++|.+-++.+....+|
T Consensus 644 ~~~~~~lp~l~~AErdF-------k~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 644 HSFHSELPVLSDAERDF-------KKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred hcccccCCcchhHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 1 222233444433 344444445555555555555444333
No 246
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.31 E-value=1.3e+02 Score=31.56 Aligned_cols=28 Identities=25% Similarity=0.086 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 252 FQFQLIAHQEERDAISSKIEVSQAHLEL 279 (497)
Q Consensus 252 ~q~ql~~~~ee~~sl~~q~~~~~~qLdk 279 (497)
...++.++++++..++..++....+...
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e 250 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTNKKSE 250 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 247
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=72.29 E-value=1.1e+02 Score=35.35 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 010914 383 TLFLSCLKDFAEF 395 (497)
Q Consensus 383 ~afL~cl~q~~e~ 395 (497)
..|++++.+.++-
T Consensus 421 ~~f~~~~~e~adl 433 (617)
T PF15070_consen 421 SRFMDLMEEKADL 433 (617)
T ss_pred HHHHHHHHHHhhH
Confidence 3577777776553
No 248
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.12 E-value=1.8e+02 Score=35.50 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAY 176 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y 176 (497)
.|.++.++++.++..-
T Consensus 412 nLs~k~e~Leeri~ql 427 (1195)
T KOG4643|consen 412 NLSKKHEILEERINQL 427 (1195)
T ss_pred hHhHHHHHHHHHHHHH
Confidence 3444444444444433
No 249
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=72.06 E-value=1.2e+02 Score=33.32 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010914 224 VNAELKELELKSKRFKELEERYWQEFNNFQF 254 (497)
Q Consensus 224 l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ 254 (497)
+.+++...+++..+++++|++.|..-|.-+.
T Consensus 370 ~~~rl~~ie~~~~~l~e~e~~lwffen~~~i 400 (429)
T PF10037_consen 370 RKERLEEIEKEDKELYEQEQQLWFFENEDKI 400 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6677788888888999999999998777554
No 250
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.98 E-value=1.5e+02 Score=38.23 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=8.2
Q ss_pred chhhHHHHHHHHH
Q 010914 126 FHSTITVLKRAFE 138 (497)
Q Consensus 126 ls~~i~~l~~lFd 138 (497)
+-++++-+.+.|+
T Consensus 634 ~e~~l~qLe~~le 646 (1822)
T KOG4674|consen 634 KEKRLRQLENELE 646 (1822)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666665
No 251
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=71.94 E-value=20 Score=37.46 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=11.0
Q ss_pred ccCCcchHHHHHHHH
Q 010914 145 QVEQPLCLECMRVLS 159 (497)
Q Consensus 145 ~IDhPLC~eC~d~Ll 159 (497)
.--|++|..|.|.|.
T Consensus 22 ~C~H~lCEsCvd~iF 36 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIF 36 (300)
T ss_pred cccchHHHHHHHHHH
Confidence 566888888887754
No 252
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.78 E-value=2.1e+02 Score=34.08 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 153 ECMRVLSDKLDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 153 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 181 (497)
++.+.+...+...+..+......+...+.
T Consensus 167 ~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 167 EKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655
No 253
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.47 E-value=1.3e+02 Score=34.39 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=19.1
Q ss_pred HHhhHHHHHHHHhhCCccCCccccCCCccc
Q 010914 444 TLCNLKWALFWFVGNTNFQPVSAMSSPAEV 473 (497)
Q Consensus 444 lLtNlKWlLaw~~~~t~~~~~~~~~~~~~~ 473 (497)
++..+||...+.+.+....-+..++-++.+
T Consensus 602 ~~~~~k~~~~~ql~~~~~~~~~~~~ln~~d 631 (654)
T KOG4809|consen 602 LAECLKWLTTFQLVSIGLAAVAMDVLNTGD 631 (654)
T ss_pred HHHHHccccHHHHHHHHHHhcccCCCCCCc
Confidence 567889998888876665544444444433
No 254
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.46 E-value=58 Score=26.99 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=19.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 248 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 248 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
+.+.+..++...-.+...|....+....+|+.++
T Consensus 34 ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 34 ERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555666666666666666554
No 255
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=71.45 E-value=1.1e+02 Score=30.40 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010914 200 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 252 (497)
Q Consensus 200 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~ 252 (497)
+.++..|.+.+...|..+|+....+-+.-+.++.-+..+..-|+.+=+...++
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey 123 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEY 123 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444444433333333333333333333333333
No 256
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=71.36 E-value=61 Score=37.08 Aligned_cols=122 Identities=25% Similarity=0.333 Sum_probs=61.1
Q ss_pred HHHHhhcC-----CCccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccc---ccCCC-HHHH-HHHHH
Q 010914 135 RAFEIATS-----QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEA---CLQRLEGEA---RDVLS-EADF-LKEKL 201 (497)
Q Consensus 135 ~lFdIlSs-----~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~---fL~~L~~~~---~~~~~-ee~l-~~e~~ 201 (497)
.+|+=||+ -.+||-| +|.| .|-++++.+..|...... .|.-++.+- .+.++ +.++ .-|++
T Consensus 274 sl~eels~aGs~liGdvdeg-----Adll--GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgEle 346 (832)
T KOG2077|consen 274 SLFEELSSAGSGLIGDVDEG-----ADLL--GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELE 346 (832)
T ss_pred chhhhhhhccccccccccch-----hhhh--cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHH
Confidence 45655553 2455544 4555 777777777666554333 232222110 01122 2222 22443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELE-------------LKSKRFKELEE-RYWQEFNNFQFQLIAHQEER 263 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le-------------~e~~~L~~eE~-~~w~e~n~~q~ql~~~~ee~ 263 (497)
..++-..+|++.|.++|.|...+.++..+.. ++.+++..-|- +..-++|.++-.|.++|+..
T Consensus 347 a~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 347 AVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444555555555555544444432 22334444443 67788899998888887644
No 257
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=71.31 E-value=47 Score=40.76 Aligned_cols=16 Identities=6% Similarity=0.291 Sum_probs=8.2
Q ss_pred chhHHHHHHHHHHHHH
Q 010914 377 RYDKAMTLFLSCLKDF 392 (497)
Q Consensus 377 kFD~AM~afL~cl~q~ 392 (497)
+|+..+..+.+-++|.
T Consensus 671 ~~e~~lk~~q~~~eq~ 686 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQE 686 (1317)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555444
No 258
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.13 E-value=25 Score=33.60 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 205 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
++.+++.+|++++++|.++.+.+++.++++.+.++
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554443
No 259
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=71.07 E-value=1.1e+02 Score=30.24 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010914 204 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 260 (497)
Q Consensus 204 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ 260 (497)
+.....|...|.-...+..++.........|...|+.+-..+-..++.++.+...++
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566777777777777788777777888888887776666666666666555444
No 260
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.95 E-value=1e+02 Score=32.41 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=12.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 010914 376 TRYDKAMTLFLSCLKDFAEFAN 397 (497)
Q Consensus 376 ~kFD~AM~afL~cl~q~~e~~~ 397 (497)
+||..-=..+++-|+.+..-++
T Consensus 222 kKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 222 KKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666665553
No 261
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.86 E-value=2e+02 Score=33.11 Aligned_cols=30 Identities=20% Similarity=0.028 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 252 FQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 252 ~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
.+.++.+++.+.+.....|+....+++.++
T Consensus 374 ~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 374 QQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666655555544
No 262
>PF15294 Leu_zip: Leucine zipper
Probab=70.68 E-value=1.1e+02 Score=32.00 Aligned_cols=43 Identities=30% Similarity=0.366 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+.+|+.+|.+|-.+|...|..+|+.......|-.+++.++..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888766555444444444433333
No 263
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.40 E-value=1.3e+02 Score=35.67 Aligned_cols=10 Identities=20% Similarity=0.066 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 010914 383 TLFLSCLKDF 392 (497)
Q Consensus 383 ~afL~cl~q~ 392 (497)
...|+.+.++
T Consensus 602 t~~lel~~~k 611 (1118)
T KOG1029|consen 602 TKALELIGEK 611 (1118)
T ss_pred HHHHHHHhhh
Confidence 3334433333
No 264
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=70.22 E-value=1.1e+02 Score=29.93 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
.+|..+|..++...++-+..+..|+.+ ++-....|=++++.-.....+.+.+...+...+....
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~---leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQ---LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444432 2223333444444444444444444444444433333
No 265
>PF13514 AAA_27: AAA domain
Probab=69.95 E-value=1.1e+02 Score=37.13 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH
Q 010914 311 KIPVEWDEINAAWGQACLLLHTMC 334 (497)
Q Consensus 311 ~~~V~W~EINAAwGQ~~LLL~tla 334 (497)
...|+..+.-.+----+.|-.-||
T Consensus 1018 G~~~~~~~LS~GT~dQLYLALRLA 1041 (1111)
T PF13514_consen 1018 GERVPVEELSRGTRDQLYLALRLA 1041 (1111)
T ss_pred CeEeeHHHhCHHHHHHHHHHHHHH
Confidence 346777777776654444444343
No 266
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.84 E-value=24 Score=35.88 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010914 248 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 285 (497)
Q Consensus 248 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV 285 (497)
++.-|+....++++|+.....++...++++++|++-|+
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666777777777777778888888888776
No 267
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.82 E-value=1.3e+02 Score=34.99 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY---------------WQEFNNFQFQLIAHQEERDAI 266 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~---------------w~e~n~~q~ql~~~~ee~~sl 266 (497)
-|+++...+...|+++.+++++-.+|+.++..+++.+..+.-.. .+..+.|+-+|.++++|...=
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~R 179 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDR 179 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777888888888888888888888887777775554433 345555666666666555433
Q ss_pred HHH
Q 010914 267 SSK 269 (497)
Q Consensus 267 ~~q 269 (497)
..+
T Consensus 180 lek 182 (660)
T KOG4302|consen 180 LEK 182 (660)
T ss_pred HHH
Confidence 333
No 268
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.74 E-value=90 Score=28.53 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 165 EVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 165 qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
++.++..+-+.+..|+..+.. -.++..+...+..+-..+.+..-.++.+.+++..++...-.+...+.
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~-------~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~ 75 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQ-------VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELE 75 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS---------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666554422 12344444445555555555554444455555444444444433333
No 269
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.66 E-value=17 Score=38.06 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 010914 322 AWGQACLLLHTMCQYFRP 339 (497)
Q Consensus 322 AwGQ~~LLL~tla~~l~~ 339 (497)
-.|-++|.-.++ -|+|+
T Consensus 310 l~GD~llaaa~i-sY~G~ 326 (344)
T PF12777_consen 310 LVGDSLLAAAFI-SYLGP 326 (344)
T ss_dssp HHHHHHHHHHHH-HCCCC
T ss_pred cHHHHHHHHHHH-HHcCC
Confidence 345443333333 36663
No 270
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=69.49 E-value=2e+02 Score=34.09 Aligned_cols=78 Identities=21% Similarity=0.362 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
.+++|-+++...+.+-+++..+-.+ ..+.|..+++.+=++-...+-.+++.|.+.+.|...|..-+.+-..++.||+
T Consensus 466 ~q~~Enk~~~~~~~ekd~~l~~~kq---~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 466 NQKEENKRLRKMFQEKDQELLENKQ---QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 3344444444444443333333222 1223344444444456777888888888888888888777777777777776
Q ss_pred h
Q 010914 282 R 282 (497)
Q Consensus 282 k 282 (497)
.
T Consensus 543 e 543 (861)
T PF15254_consen 543 E 543 (861)
T ss_pred H
Confidence 5
No 271
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=69.45 E-value=93 Score=36.74 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010914 318 EINAAWGQACLLLHTMC 334 (497)
Q Consensus 318 EINAAwGQ~~LLL~tla 334 (497)
||-||=|-.|=.=-||+
T Consensus 734 EiaaAA~KLAECQeTI~ 750 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIA 750 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887776666665
No 272
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.40 E-value=62 Score=35.59 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=53.0
Q ss_pred CCccCCcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 143 QTQVEQPLCLECMRVLSD--KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQ 220 (497)
Q Consensus 143 ~s~IDhPLC~eC~d~Lle--~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e 220 (497)
++.+...-|+=|.+.=.+ +++.--+.+++|..+....|.+ .-..+++..|.++-.+.+++|..=.--.|++
T Consensus 91 k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr-------~~~~~~Lenem~ka~Ed~eKlrelv~pmeke 163 (542)
T KOG0993|consen 91 KSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSR-------GQYQLDLENEMDKAKEDEEKLRELVTPMEKE 163 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhhhhHHHHHHHHhhHHHHHHHHhhHHHH
Confidence 445555667777654222 1222223334444443333332 1124667788888888888877766777888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010914 221 NAEVNAELKELELKSKRFK 239 (497)
Q Consensus 221 ~~~l~~El~~le~e~~~L~ 239 (497)
.+++.+.+.+.+..+++|.
T Consensus 164 I~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 164 INELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 8888877777776665554
No 273
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=69.39 E-value=1.1e+02 Score=34.56 Aligned_cols=32 Identities=16% Similarity=0.431 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q 010914 153 ECMRVLSDKLDKEVDDVTRDIEA-----YEACLQRLE 184 (497)
Q Consensus 153 eC~d~Lle~Ld~qle~~~~E~d~-----Y~~fL~~L~ 184 (497)
|=....+..|.+++++++.|... |..|...+.
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~ 46 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQ 46 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666543 666665554
No 274
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.17 E-value=42 Score=27.72 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
|+.--..|....++|..|...+.+++..++.|
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555444444444433
No 275
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=69.15 E-value=1.4e+02 Score=34.55 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=10.4
Q ss_pred CCCCCCC-ChHHHHHHHHHH
Q 010914 308 RLPKIPV-EWDEINAAWGQA 326 (497)
Q Consensus 308 rlp~~~V-~W~EINAAwGQ~ 326 (497)
..|..|+ +..=.+.+.|-+
T Consensus 420 ~~P~~P~~P~~~~~l~~~~~ 439 (754)
T TIGR01005 420 SVPSEPYFPKKGPIVGLAAV 439 (754)
T ss_pred cCCCCCCCCchHHHHHHHHH
Confidence 3455555 445556666543
No 276
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=68.98 E-value=17 Score=40.36 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 218 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 218 E~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
.++...++.+++.+. ++++..|++||..||.+...+...+ .|..+.++++..++
T Consensus 428 ~~~i~~l~~~i~~~~---~rl~~~e~~~~~qf~~m~~~~~~m~-------sq~~~L~q~l~~~~ 481 (483)
T COG1345 428 NKQIKSLDKDIKSLD---KRLEAAEERYKTQFNTLDDMMTQMN-------SQSSYLTQQLVSVS 481 (483)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhcc
Confidence 344444444444444 2467889999999999987776544 44455555555443
No 277
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.93 E-value=77 Score=37.35 Aligned_cols=38 Identities=32% Similarity=0.376 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
..++.+++.+..++..+|...+.+.+.+..++.+.+..
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~ 632 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQK 632 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444444444444444443333
No 278
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.49 E-value=61 Score=28.36 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
.-++...+.+..+++.++++...+.+++..++...
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555443
No 279
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=68.47 E-value=1.3e+02 Score=31.99 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+.+.+++++-.|+.|-.+|+-|-++..++..++.+++...++.
T Consensus 257 it~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 257 ITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777777777777777777777777777776555544
No 280
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.36 E-value=1.2e+02 Score=29.44 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 232 ELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 232 e~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
+.+...++..=.++=.....++.++..+..++..+..+.....
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334333333444444444444444444444444433333
No 281
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=68.31 E-value=7.7 Score=44.55 Aligned_cols=125 Identities=26% Similarity=0.330 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CCHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEAD--FLKEK----LKIEEEERKLEAAIEETEKQNAEVNAEL 228 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~-~~ee~--l~~e~----~~Le~EE~~L~~eL~~LE~e~~~l~~El 228 (497)
..++..|+++..-+.+||+.|+.-|+....+.... .+..+ -.+++ +.++....++..+|++++++........
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~ 477 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRN 477 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34667788888888999999999888876543211 01001 00011 1122222223334444544443333322
Q ss_pred HHHHHHHHHHHHHH---H----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 229 KELELKSKRFKELE---E----RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 229 ~~le~e~~~L~~eE---~----~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 280 (497)
..++.+...+.... . .+=..++.++.+...++.++..+..++.....+|+++
T Consensus 478 ~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 478 ETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp ----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333332111 1 1345677788888888888888888888888888874
No 282
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=68.14 E-value=94 Score=28.16 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010914 163 DKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 163 d~qle~~~~E~d~Y~~fL~~L~ 184 (497)
..+++......+.|..-++.|.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~ 26 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQ 26 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 283
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=68.02 E-value=88 Score=27.75 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l---~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
....+++.+...+..|..-+...... .++...+ ..=+..|..........+..++.+.+....++.+...+.+.
T Consensus 31 ~~~~~l~~l~~~~~~~~~~~~~~~~~---g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~ 107 (141)
T TIGR02473 31 RLETQLQQLIKYREEYEQQALEKVGA---GTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKA 107 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554433322211 1333332 23345577777777788888888888888888888888888
Q ss_pred HHHHHHHHHHHHhH
Q 010914 238 FKELEERYWQEFNN 251 (497)
Q Consensus 238 L~~eE~~~w~e~n~ 251 (497)
++.+-++...++..
T Consensus 108 lekL~ek~~~~~~~ 121 (141)
T TIGR02473 108 LEKLKEKKQKEYRA 121 (141)
T ss_pred HHHHHHHHHHHHHH
Confidence 88776655555544
No 284
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.00 E-value=1.5e+02 Score=31.07 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL 286 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~ 286 (497)
.|+++.+|..+|.+-++-.+.-+.+.+.==++|+.+.|--...| .+|...++.|++-. |+.-+.+
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KL-------EsLLqsMElAq~g~--~rde~~l 182 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKL-------ESLLQSMELAQSGS--LRDEGCL 182 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHH-------HHHHHHHHHHHhcc--ccccCCc
Confidence 45666777777777676666666666666678999998776665 45666677787665 5554433
No 285
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=67.70 E-value=76 Score=28.24 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 157 VLSDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 157 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
..++.+..+++.+...+..|...++.|+
T Consensus 13 ~~i~~l~~~~~~l~~~~~e~~~~~~~l~ 40 (129)
T cd00584 13 QEIEELQQELARLNEAIAEYEQAKETLE 40 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777888877766654
No 286
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=67.68 E-value=91 Score=32.63 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010914 262 ERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 262 e~~sl~~q~~~~~~qLdkL~ 281 (497)
....++.|+..+..++++|.
T Consensus 96 qv~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555543
No 287
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=67.51 E-value=76 Score=31.54 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=4.4
Q ss_pred HHHHHHhhcCC
Q 010914 329 LLHTMCQYFRP 339 (497)
Q Consensus 329 LL~tla~~l~~ 339 (497)
+|.-+.++|-.
T Consensus 137 iLt~viQ~LP~ 147 (228)
T PRK06800 137 ILTGIVQTLPT 147 (228)
T ss_pred HHHHHHHHcch
Confidence 33344444433
No 288
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.47 E-value=54 Score=26.82 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 247 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~ 247 (497)
++.+.+.+++...+++...+..+|+..+..+.++..+..++.+++.--.=.|+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666677777777777777777777777776666655443443
No 289
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=67.37 E-value=40 Score=32.27 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 010914 259 HQEERDAISSKIEV 272 (497)
Q Consensus 259 ~~ee~~sl~~q~~~ 272 (497)
.+.+.+.++.|.+.
T Consensus 173 ~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 173 KEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 290
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=67.37 E-value=1.5e+02 Score=30.19 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 244 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 244 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
.|-..++..+.....++.+....+..|..+...|+.++
T Consensus 181 ~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 181 KFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555666777777776654
No 291
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=67.29 E-value=32 Score=35.24 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFN 250 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n 250 (497)
+.+..++-+..+.+....+..||+|.+.+..+++.|+.|+..+.....+||...+
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 4444555555667778889999999999999999999999999888888887544
No 292
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=67.11 E-value=1.1e+02 Score=32.06 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeecc
Q 010914 260 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINN 303 (497)
Q Consensus 260 ~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTING 303 (497)
+.+.+.+.+++..++.+++.++..-- +....=-.||.+..++-
T Consensus 157 ~~~~~~~~~~l~~~~~~l~~~~~~l~-~~~I~AP~dG~V~~~~~ 199 (370)
T PRK11578 157 QAQIGTIDAQIKRNQASLDTAKTNLD-YTRIVAPMAGEVTQITT 199 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCEEECCCCcEEEeeec
Confidence 33444555555555555555443211 11233334666666553
No 293
>PLN02678 seryl-tRNA synthetase
Probab=66.89 E-value=52 Score=36.30 Aligned_cols=91 Identities=14% Similarity=0.294 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 275 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 275 (497)
...++.++.++.+++..+++.|..++.++.++|..+....++. +..-.+...+..++..++++.+.++.++....
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~----~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~- 105 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDA----TELIAETKELKKEITEKEAEVQEAKAALDAKL- 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3566777888888999999999999999998887643222111 11222333444444444444444444444322
Q ss_pred HHHHHhhcccCCCceeeeec
Q 010914 276 HLELLKRTNVLNDAFPIWHD 295 (497)
Q Consensus 276 qLdkL~ktNV~Nd~F~I~hd 295 (497)
++==|+...-=+++.|
T Consensus 106 ----~~iPNi~~~~VP~G~d 121 (448)
T PLN02678 106 ----KTIGNLVHDSVPVSND 121 (448)
T ss_pred ----HhCCCCCCccCCCCCC
Confidence 2223555555555543
No 294
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.60 E-value=1.2e+02 Score=31.12 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHH
Q 010914 152 LECMRVLSDKLDKEVDDV-TR---DIEAYEACLQR 182 (497)
Q Consensus 152 ~eC~d~Lle~Ld~qle~~-~~---E~d~Y~~fL~~ 182 (497)
.++.-..++.+..+|... .+ =-..|..||+.
T Consensus 150 ~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 150 YQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 456666666667776554 22 23346677765
No 295
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=66.42 E-value=2.8e+02 Score=32.95 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 244 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 244 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 280 (497)
.|=.++..++..+..++.++.....++..++.+..+|
T Consensus 469 ~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l 505 (775)
T PF10174_consen 469 TYQKELKELKAKLESLQKELSEKELQLEDAKEEASKL 505 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 3444444444444444444444444444444444443
No 296
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=66.17 E-value=2.8e+02 Score=32.94 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=4.9
Q ss_pred cccccCccccc
Q 010914 47 STRMDNSFVVL 57 (497)
Q Consensus 47 ~~~~d~s~~vl 57 (497)
||=||-=++.|
T Consensus 39 SSIldAI~~AL 49 (908)
T COG0419 39 SSILDAITFAL 49 (908)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 297
>PRK07737 fliD flagellar capping protein; Validated
Probab=65.91 E-value=25 Score=39.07 Aligned_cols=48 Identities=15% Similarity=0.413 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 010914 216 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 266 (497)
Q Consensus 216 ~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl 266 (497)
.|.++...++.++..++.+ ++..|++||+.|+.++.-+..++.....|
T Consensus 445 ~l~~~i~~l~~~i~~~~~r---l~~~e~ry~~qf~ale~~~s~mnsq~s~L 492 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDR---LKQIEDRYYKKFSAMEKAIQKANEQSMYL 492 (501)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666543 56668899999999988776655444333
No 298
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=65.67 E-value=1.7e+02 Score=31.79 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEE----TEKQNAEVNAELKELEL 233 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~----LE~e~~~l~~El~~le~ 233 (497)
.++.|..++..+...+.....-+. .....-..-+..+.+-...+..|..+....... ++++.+.+.+++..++.
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~~~~~--~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~ 363 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLSTELG--AKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKG 363 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--ccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 234 KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 276 (497)
Q Consensus 234 e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 276 (497)
+...+.+.+ ..++.+++++.....-...+..+++.+..+
T Consensus 364 ~~~~~~~~~----~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 364 RLSKLPKLQ----VQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHhhchHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 299
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.64 E-value=2.6e+02 Score=33.53 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 257 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~ 257 (497)
.+++....++.-+++.+.+...++..|.++++++...+..+-.+.-++++.++.|+.
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666777777777777777777777777666665566666666666655
No 300
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=65.48 E-value=20 Score=39.70 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=10.3
Q ss_pred eeeeecCCCceeee
Q 010914 345 IKIIPMGSYPRIMD 358 (497)
Q Consensus 345 YkLvPmGS~SkI~~ 358 (497)
..-+|-|||.+-.-
T Consensus 211 ~~YiPsgSf~~avl 224 (475)
T PRK13729 211 LPYIPSGSFAKAML 224 (475)
T ss_pred CceeCCCCeEEEEE
Confidence 44679999987753
No 301
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=65.45 E-value=20 Score=38.55 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecC
Q 010914 255 QLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG 296 (497)
Q Consensus 255 ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG 296 (497)
++.++++++++++.++..+..-++.=...-++..++.|.+..
T Consensus 274 k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~ 315 (406)
T PF02388_consen 274 KLKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGD 315 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECC
Confidence 333444455555555555555455555556788888887765
No 302
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=65.24 E-value=59 Score=31.48 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 287 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~N 287 (497)
..+.++.|+.+.+.+.++|.+|+...+.+.+.= -..||..|-.|.+.+..++......+.++...++--
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~v---------vsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDV---------VSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 345566677777777777777776665554331 134677788888888888888888888887766544
No 303
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=64.92 E-value=21 Score=41.16 Aligned_cols=52 Identities=12% Similarity=0.256 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010914 214 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 268 (497)
Q Consensus 214 L~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~ 268 (497)
.+.|+++...++.++++++. +|+..|++||+.|..++..+..++.....|.+
T Consensus 602 ~~~l~~~i~~l~~~i~~~e~---rl~~~e~rl~~QFtaME~~msqmnsqss~L~~ 653 (661)
T PRK06664 602 VKGLDERIADNNKKIEEYEK---KLESKERKLKGKYLTMDQTVKKMKEQSNYLKN 653 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555553 46778899999999998877665544444433
No 304
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=64.88 E-value=1.2e+02 Score=32.82 Aligned_cols=48 Identities=27% Similarity=0.266 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 241 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~e 241 (497)
+++..|.++=-+.|...++.|+++..|++.|.++++..+...+.++++
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeE 274 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEE 274 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334333233344455566666667777766666666555555443
No 305
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=64.64 E-value=2.2e+02 Score=34.22 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 205 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL--EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~e--E~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
+|...|++.++.+..+..++.+++..+..++..|+.- =...-+.+..++.++.+...+-.++..-...+.+.|..+++
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke 853 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKE 853 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344445555555555555555555554444310 01122334444444444444444555555556666665554
Q ss_pred cc---cCC---CceeeeecCCeeeec
Q 010914 283 TN---VLN---DAFPIWHDGEFGTIN 302 (497)
Q Consensus 283 tN---V~N---d~F~I~hdG~fGTIN 302 (497)
.- |++ ++|.==.||.|.+|+
T Consensus 854 ~rlP~vi~~A~~~F~hlT~G~Yt~Iy 879 (984)
T COG4717 854 RRLPAVIQEASEFFMHLTDGRYTGIY 879 (984)
T ss_pred hhchHHHHHHHHHHhhccCCceeeee
Confidence 32 222 455544789998887
No 306
>PF13514 AAA_27: AAA domain
Probab=64.61 E-value=3.2e+02 Score=33.33 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
+..+..+++..+++++.|..-+..|-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888887776653
No 307
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=64.53 E-value=1.5e+02 Score=34.22 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010914 207 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 255 (497)
Q Consensus 207 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~q 255 (497)
..+|.++++.|..+..+++++|+..+.+....+..=++.|.+..+.+..
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555554445556655555433
No 308
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=64.39 E-value=2.5e+02 Score=31.60 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 209 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 247 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~ 247 (497)
.|.++.+.|++...+|++...+++.+.+++++.++++..
T Consensus 91 ~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~ 129 (514)
T TIGR03319 91 TLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEE 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433333
No 309
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.21 E-value=1.1e+02 Score=27.65 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 211 EAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 211 ~~eL~~LE~e~~~l~~El~~le 232 (497)
...+..|+.+.+.+.+.+.+|+
T Consensus 43 ~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 43 RNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 310
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=64.00 E-value=1.8e+02 Score=32.56 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=4.2
Q ss_pred eeeeCCccce
Q 010914 415 YKIENDKVEN 424 (497)
Q Consensus 415 Y~I~kdkIgg 424 (497)
|.|+++..+|
T Consensus 513 ~~l~k~~~~~ 522 (563)
T TIGR00634 513 FKVEKEGLDG 522 (563)
T ss_pred EEEEEccCCC
Confidence 3444444443
No 311
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.78 E-value=3.1e+02 Score=33.71 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=7.1
Q ss_pred CchhhHHHHHHHh
Q 010914 434 QENWTKALKYTLC 446 (497)
Q Consensus 434 ~e~WTkAlK~lLt 446 (497)
+...-|||-|.--
T Consensus 590 e~e~eka~~~a~g 602 (1141)
T KOG0018|consen 590 EPEYEKAVQFACG 602 (1141)
T ss_pred CHHHHHHHHHHhc
Confidence 4466666655443
No 312
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=63.76 E-value=52 Score=29.12 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 249 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 249 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 280 (497)
++.++..+.+..-+.+.+.++++-...+++.|
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 313
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=63.51 E-value=1.1e+02 Score=35.09 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
++.+.+.|.+++..++... ....+.. + .....+.....+...|+++++......+.+|..+...
T Consensus 3 ad~~~~~L~~eL~~le~~n--i~~l~~s-~-------------~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~d 66 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAAN--IHSLLES-E-------------KQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDD 66 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-h-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888887774432 2222221 0 1112233333444444555555555444444444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010914 235 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 285 (497)
Q Consensus 235 ~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV 285 (497)
.+..+.+.... +--+ .+...+.++++.|..++.....+++.|+..++
T Consensus 67 i~~IE~qn~~L-qvq~---~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l 113 (701)
T PF09763_consen 67 IEYIESQNNGL-QVQS---ANQKLLLNELENLLDTLSIPEEHLEALRNASL 113 (701)
T ss_pred HHHHHhhcCch-hhHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCC
Confidence 43333322211 1111 22334566777888888888888888887655
No 314
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=63.40 E-value=26 Score=34.08 Aligned_cols=14 Identities=7% Similarity=0.173 Sum_probs=9.4
Q ss_pred CccCCcchHHHHHH
Q 010914 144 TQVEQPLCLECMRV 157 (497)
Q Consensus 144 s~IDhPLC~eC~d~ 157 (497)
.-=||++|-||.|-
T Consensus 97 GICDy~~CCDGSDE 110 (176)
T PF12999_consen 97 GICDYDICCDGSDE 110 (176)
T ss_pred CcCcccccCCCCCC
Confidence 33578888876664
No 315
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=63.21 E-value=1.6e+02 Score=29.00 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 226 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 276 (497)
Q Consensus 226 ~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 276 (497)
..+..++.+...+...-.++-..+..++.++.++......+.++...++.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555556666666666666666666555544
No 316
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.01 E-value=94 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
|+++|..+...+.+|...++...++|+
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 333333333334443333333333333
No 317
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=62.95 E-value=28 Score=29.86 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=6.8
Q ss_pred HHHHHHhHHH
Q 010914 244 RYWQEFNNFQ 253 (497)
Q Consensus 244 ~~w~e~n~~q 253 (497)
+..++||+++
T Consensus 43 ~lLheYNeiK 52 (83)
T PF07061_consen 43 KLLHEYNEIK 52 (83)
T ss_pred HHHHHHhHHH
Confidence 4567777775
No 318
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.86 E-value=1.9e+02 Score=29.86 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+.....+|.+=+++...++..|+++..++++.|....++..-|
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666667788888888888888888887777666
No 319
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=62.80 E-value=1e+02 Score=26.74 Aligned_cols=60 Identities=30% Similarity=0.363 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 168 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 229 (497)
Q Consensus 168 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~ 229 (497)
.+.++++.|...+.-++++..- +...+ ..++..+-.++..+..+|.++++++..+-..+.
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~~-l~~~d-~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~ 68 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEEREA-LISGD-IDELEELVEEKQELLEELRELEKQRQQLLAKLG 68 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666777777666654321 11112 234555666777788888888888877666544
No 320
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=62.71 E-value=1.2e+02 Score=33.91 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 276 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 276 (497)
.+|.+++.-|..=-.++++.++.+.-.|+.+|.++|++...++. ..+-|+..+.++..+..+........
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s----------~~~~q~~~~h~~ka~~~~~~~~l~~~ 377 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLES----------AGQTQIFRKHPRKASILNMPLVLTLF 377 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HhHHHHHHhhhHhhhhhhchHHHHHH
Confidence 44555544444444556666666777777777777666555542 34566677777777777777777777
Q ss_pred HHHHhhcccCCCceeeeecC------------CeeeeccccCCCC
Q 010914 277 LELLKRTNVLNDAFPIWHDG------------EFGTINNFRLGRL 309 (497)
Q Consensus 277 LdkL~ktNV~Nd~F~I~hdG------------~fGTINGlRLGrl 309 (497)
++.++..|=|-.+|-=.... -=.+||-+|+--.
T Consensus 378 ~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~ 422 (554)
T KOG4677|consen 378 YECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAW 422 (554)
T ss_pred HHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhh
Confidence 77777777666655433221 1246777777543
No 321
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=62.27 E-value=1.4e+02 Score=29.71 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 256 LIAHQEERDAISSKIEVSQAHL 277 (497)
Q Consensus 256 l~~~~ee~~sl~~q~~~~~~qL 277 (497)
+....++++.++.|.+....+|
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444
No 322
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=62.13 E-value=3.4e+02 Score=33.94 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=9.4
Q ss_pred chhhHHHHHHHHHhhc
Q 010914 126 FHSTITVLKRAFEIAT 141 (497)
Q Consensus 126 ls~~i~~l~~lFdIlS 141 (497)
+..++..|.++=.||+
T Consensus 1520 I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILS 1535 (1758)
T ss_pred HHHHHHhcccHHHHHH
Confidence 4555566666666664
No 323
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=62.03 E-value=30 Score=36.20 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 204 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 243 (497)
Q Consensus 204 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~ 243 (497)
+.|-+.|.-|++.||+..++|..+..+++.|+..|++.=.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667888888999998888888888888877765533
No 324
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.01 E-value=51 Score=33.00 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCCCccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 132 VLKRAFEIATSQTQVEQPL--CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 132 ~l~~lFdIlSs~s~IDhPL--C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 181 (497)
.+....+-|.+-..|++-- =+|=++...+ ++.+++..+.+.+.|.+.|+
T Consensus 106 ~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D-~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 106 KFDSFLDELSELGKVTSRNISSEDVTEQYVD-LEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHHhccCceeeeeccccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444431 2344555554 56666666666666666665
No 325
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=61.98 E-value=2.2e+02 Score=30.29 Aligned_cols=125 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA---DFLKEKLKIEEEERKLEAAIEETEKQNAE-------- 223 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee---~l~~e~~~Le~EE~~L~~eL~~LE~e~~~-------- 223 (497)
+....+.|+.|+.++.++.+..+.-|+..+.+..-...++ ....++..+..+......++.+++.....
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 248 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALP 248 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccch
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 224 ---VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 279 (497)
Q Consensus 224 ---l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 279 (497)
-...+..+..++.+++.+..+....|..-.=+....+.++..++.++......+..
T Consensus 249 ~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~ 307 (444)
T TIGR03017 249 EVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTS 307 (444)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
No 326
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=61.74 E-value=1.5e+02 Score=34.51 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 216 ETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 216 ~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.||.++-+|.+|+.+|+.+...++
T Consensus 171 sLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 171 SLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred hHHHHHhHHHHHHHHhHHHHHHHH
Confidence 455555555555555555554444
No 327
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=61.71 E-value=1.1e+02 Score=28.63 Aligned_cols=75 Identities=27% Similarity=0.374 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCC--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLS--EAD------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 229 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~--~~~--ee~------l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~ 229 (497)
..++.++..+..+++........++--..+ .+. --+ ..+-...||+-.+.+.++|+.||.+.+.+.+++.
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777776666655421111 000 000 1222345777788888888888888888888777
Q ss_pred HHHHH
Q 010914 230 ELELK 234 (497)
Q Consensus 230 ~le~e 234 (497)
+|+.-
T Consensus 113 ~LK~~ 117 (131)
T KOG1760|consen 113 ELKKV 117 (131)
T ss_pred HHHHH
Confidence 77654
No 328
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=61.41 E-value=2.5e+02 Score=30.76 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 245 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 279 (497)
Q Consensus 245 ~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 279 (497)
.-++.-.+..+|.+.+.|...++.+++....-||.
T Consensus 354 Lrkerd~L~keLeekkreleql~~q~~v~~saLdt 388 (442)
T PF06637_consen 354 LRKERDSLAKELEEKKRELEQLKMQLAVKTSALDT 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34455556666666666666666666666666654
No 329
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=61.24 E-value=2.3e+02 Score=33.82 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=7.1
Q ss_pred HHHHHHHHHHh
Q 010914 174 EAYEACLQRLE 184 (497)
Q Consensus 174 d~Y~~fL~~L~ 184 (497)
+.|..++++|.
T Consensus 903 ~~~e~~~~~l~ 913 (1259)
T KOG0163|consen 903 KNYEKLVKRLD 913 (1259)
T ss_pred HHHHHHHHHhh
Confidence 34777777765
No 330
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=60.98 E-value=88 Score=32.16 Aligned_cols=22 Identities=14% Similarity=-0.150 Sum_probs=16.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 010914 375 STRYDKAMTLFLSCLKDFAEFA 396 (497)
Q Consensus 375 ~~kFD~AM~afL~cl~q~~e~~ 396 (497)
...||....+||....+.+-.+
T Consensus 210 ~~~~~Is~~~~lt~~~~~c~~~ 231 (292)
T KOG4005|consen 210 DEEFDISRLEELTESLLACITA 231 (292)
T ss_pred chhhhHHHHHHHHHHHHHHhhh
Confidence 3478888888888877776654
No 331
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=60.88 E-value=1.7e+02 Score=29.25 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHH
Q 010914 258 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQAC 327 (497)
Q Consensus 258 ~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~ 327 (497)
+.++++..+..+++....++..|.+.--| .+..|....+-.. .|..+--|..|-.||....
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~~-sti~i~l~~~~~~--------~~~~~~~~~~~~~al~~~~ 226 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVDY-STITISLYEPESI--------KPESPSFGSRFRDALKNGW 226 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhce-EEEEEEEEecCCC--------CCCCCCcchHHHHHHHHHH
Confidence 33344444444444444444444433222 3455555544110 1123445666665555444
No 332
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.77 E-value=2.2e+02 Score=29.76 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
|+.++.++...++++.+-|++||.
T Consensus 96 Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 333
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=60.58 E-value=31 Score=29.88 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 010914 261 EERDAISSKIEVSQAHLELLKRTN 284 (497)
Q Consensus 261 ee~~sl~~q~~~~~~qLdkL~ktN 284 (497)
+|..++..++..-..+|..|++-|
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhh
Confidence 455556666666666666666654
No 334
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=60.48 E-value=64 Score=36.16 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 153 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 153 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
-|+..|-+.=..|+....+..+.|.+-.+++.
T Consensus 17 r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ 48 (604)
T KOG3564|consen 17 RDIEILGEGNEDEFIRLRKDFEDFEEKWKRTD 48 (604)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhhhh
Confidence 46666666666666666666666666555544
No 335
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=60.42 E-value=47 Score=28.90 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------------cCCC--------------HHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEGEAR-------------------DVLS--------------EADFLKEKLKIEE 205 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-------------------~~~~--------------ee~l~~e~~~Le~ 205 (497)
++.++.+++.+...++.|....+.|+.-.. .... +-++.+..+-++.
T Consensus 5 l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~ 84 (120)
T PF02996_consen 5 LENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHH
Confidence 467888999999999999887766652110 0000 1112334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 206 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
..+.+...++.++++.+.+.+++..++....++
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666665554443
No 336
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=60.39 E-value=1.1e+02 Score=26.30 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 010914 261 EERDAISSK 269 (497)
Q Consensus 261 ee~~sl~~q 269 (497)
+.+.++..+
T Consensus 67 erLr~LLGk 75 (79)
T PRK15422 67 ERLQALLGR 75 (79)
T ss_pred HHHHHHHHh
Confidence 333444433
No 337
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=60.31 E-value=2.4e+02 Score=30.13 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCC
Q 010914 261 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 309 (497)
Q Consensus 261 ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrl 309 (497)
+++..+++++..++.+++.++..--++..-.=-+||.+..++ ...|..
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~-~~~G~~ 274 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELN-YTPGQL 274 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEee-CCCCCE
Confidence 445566777777777777776554333444445677777766 466653
No 338
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=60.26 E-value=29 Score=30.79 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
+++++...+.+++++++.+.++|.+|+..|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555554
No 339
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.05 E-value=79 Score=34.38 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
..++.++.++.+++..+++.|.+++.++.+++..+.
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~ 62 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAK 62 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566778888888888888888888888887643
No 340
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=60.03 E-value=1e+02 Score=31.02 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
.++|...+..+++.+|.++.+|+..+.+++.+
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K 214 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLKKK 214 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35555556666666666666666655555443
No 341
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.91 E-value=95 Score=36.01 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010914 205 EEERKLEAAIEETEKQNAEVNAELKE--------------LELKSKRFKELEERYWQEFNNFQFQLIAHQEE 262 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l~~El~~--------------le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee 262 (497)
...++|.++|...|++.+.+..+|-+ |..++..+....+++|..++.-..++.+...+
T Consensus 61 ~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q 132 (660)
T KOG4302|consen 61 ESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ 132 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444432 33445555555555666666555555444333
No 342
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.82 E-value=4.1e+02 Score=32.91 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcee
Q 010914 250 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP 291 (497)
Q Consensus 250 n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~ 291 (497)
|.+..+..+..+..+.+.......+.|++.|+-+.++...+.
T Consensus 282 n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~ 323 (1109)
T PRK10929 282 DLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALR 323 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 333344444444444555555555677777777777765554
No 343
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=59.75 E-value=37 Score=38.61 Aligned_cols=36 Identities=42% Similarity=0.607 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
.+.+-.++.+++.++.++.+++++++++++++.+.+
T Consensus 91 ~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555556666666666666666655554444
No 344
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=59.72 E-value=2.1e+02 Score=31.61 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhcC
Q 010914 324 GQACLLLHTMCQYFR 338 (497)
Q Consensus 324 GQ~~LLL~tla~~l~ 338 (497)
|..+=|..+|+..+|
T Consensus 206 ~~k~~~~~tLaGs~g 220 (459)
T KOG0288|consen 206 GEKSELISTLAGSLG 220 (459)
T ss_pred cchhhhhhhhhccCC
Confidence 444556666766643
No 345
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=59.60 E-value=1.2e+02 Score=30.74 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 206 EERKLEAAIEETEKQNAE----VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~----l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 278 (497)
|+..|+..|+.+...... -+..+++|+.+.+.+.+..+-+-+.+|.++........+...+..+.+.+...+.
T Consensus 44 eg~~Ld~aL~~~~~~~~~~~~~~e~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~ 120 (256)
T PF14932_consen 44 EGEALDEALKTISAFSPKLLELEEEDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLK 120 (256)
T ss_pred CHHHHHHHHHHcccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444455555544333211 1345566666666665555555566666665544444444444444444444443
No 346
>PRK08724 fliD flagellar capping protein; Validated
Probab=59.50 E-value=44 Score=38.69 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010914 216 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 267 (497)
Q Consensus 216 ~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~ 267 (497)
.|+++...++.++..++. +++..|++||+.|+.++..+..++.....|.
T Consensus 621 sL~~~i~~l~dqi~~Le~---Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~ 669 (673)
T PRK08724 621 SLREQNYRLNDDQVALDR---RMESLEKRTHAKFAAMQDATGKMQGQLGGMM 669 (673)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555554 3567788999999999887766554444443
No 347
>PRK10869 recombination and repair protein; Provisional
Probab=59.48 E-value=2.3e+02 Score=31.89 Aligned_cols=11 Identities=0% Similarity=0.132 Sum_probs=5.2
Q ss_pred ceeeeCCccce
Q 010914 414 PYKIENDKVEN 424 (497)
Q Consensus 414 PY~I~kdkIgg 424 (497)
.|.|.++..++
T Consensus 502 ~~~v~k~~~~~ 512 (553)
T PRK10869 502 HFFVSKETDGG 512 (553)
T ss_pred EEEEeccccCC
Confidence 35555544443
No 348
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=59.40 E-value=87 Score=34.01 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
..++..+.++.+++..+++.|..++..+.++|..+
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888888888888888764
No 349
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=59.33 E-value=2.9e+02 Score=30.83 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=4.8
Q ss_pred HHHHHHHHhh
Q 010914 131 TVLKRAFEIA 140 (497)
Q Consensus 131 ~~l~~lFdIl 140 (497)
.-+..+|+-+
T Consensus 226 ~el~~~~~~l 235 (582)
T PF09731_consen 226 QELVSIFNDL 235 (582)
T ss_pred HHHHHhccch
Confidence 4445555443
No 350
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.26 E-value=74 Score=37.73 Aligned_cols=72 Identities=14% Similarity=0.275 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
..+.++++......+...|+++..+++.+.+.+++.-.+.-.++-+...+..+..+++.|++...+||...+
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455667777777777788888888888888877777777777777777777777788888877777776433
No 351
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=59.19 E-value=25 Score=39.10 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 010914 219 KQNAEVNAELKELE 232 (497)
Q Consensus 219 ~e~~~l~~El~~le 232 (497)
++.+.+++.|++++
T Consensus 97 aq~~dle~KIkeLE 110 (475)
T PRK13729 97 KQRGDDQRRIEKLG 110 (475)
T ss_pred hhhhhHHHHHHHHH
Confidence 33333333333333
No 352
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=59.05 E-value=2.6e+02 Score=30.06 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010914 255 QLIAHQEERDAISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 255 ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 283 (497)
+...+.+-...|..++..+...+..|.++
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666543
No 353
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=59.03 E-value=92 Score=26.90 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 010914 162 LDKEVDDVTRDIEA 175 (497)
Q Consensus 162 Ld~qle~~~~E~d~ 175 (497)
++.+...+..+.+.
T Consensus 34 ld~~~r~l~~~~e~ 47 (108)
T PF02403_consen 34 LDQERRELQQELEE 47 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34443333333333
No 354
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=59.02 E-value=1.2e+02 Score=26.37 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhccc--------------ccCCCH-HHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEAC--LQRLEGEA--------------RDVLSE-ADFLKEK-LKIEEEERKLEAAIEETEK 219 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~f--L~~L~~~~--------------~~~~~e-e~l~~e~-~~Le~EE~~L~~eL~~LE~ 219 (497)
|-+...++++..-+|++....+ |++|-.+. .+.++. +.+..-+ ..++++...|...|.++++
T Consensus 15 l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~ 94 (109)
T PF03980_consen 15 LEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEE 94 (109)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788888888877663 34443211 011233 3343333 3357788888999999999
Q ss_pred HHHHHHHHHHHHHH
Q 010914 220 QNAEVNAELKELEL 233 (497)
Q Consensus 220 e~~~l~~El~~le~ 233 (497)
+.+++.+++.++++
T Consensus 95 eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 95 ENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHhhc
Confidence 99998888877654
No 355
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=58.95 E-value=3.2e+02 Score=31.18 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHHhhcC-CCccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 126 FHSTITVLKRAFEIATS-QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQR 182 (497)
Q Consensus 126 ls~~i~~l~~lFdIlSs-~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~ 182 (497)
+.+++..|..-+.-.+. -++.|----.+=-..+-+.++.-|+..++|..++..-.+.
T Consensus 253 id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~ 310 (570)
T COG4477 253 IDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEEN 310 (570)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666655544432221 2222221223334456667777777788888887664443
No 356
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=58.94 E-value=1.7e+02 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Q 010914 153 ECMRVLSDKLDKEVDDVTRDIEAYEA--CLQRLE 184 (497)
Q Consensus 153 eC~d~Lle~Ld~qle~~~~E~d~Y~~--fL~~L~ 184 (497)
.|...--+.|+.+|+.+.++.+.+-. |+..|+
T Consensus 56 ~C~kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~ 89 (319)
T KOG0796|consen 56 PCPKVHDEALKADYERASKERDYGYEWDALEILE 89 (319)
T ss_pred cccchhhHHHHHHHhhchHhhhhhhhHHHHHHHH
Confidence 57788889999999999998887433 444443
No 357
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=58.77 E-value=87 Score=33.25 Aligned_cols=20 Identities=15% Similarity=0.395 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEA 178 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~ 178 (497)
++.++.+-.++.+.+..|+.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqE 21 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQE 21 (351)
T ss_pred chhhhhhcHHHHHHHHHHHH
Confidence 34555555555555555555
No 358
>PF13166 AAA_13: AAA domain
Probab=58.65 E-value=3.2e+02 Score=31.05 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=16.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 010914 307 GRLPKIPVEWDEINAAWGQACLLLHTMCQY 336 (497)
Q Consensus 307 Grlp~~~V~W~EINAAwGQ~~LLL~tla~~ 336 (497)
|..|....+.-|=| ++-|++.|+.-
T Consensus 494 ~~~~~~~LSEGEk~-----~iAf~yFla~l 518 (712)
T PF13166_consen 494 GSKPAKILSEGEKR-----AIAFAYFLAEL 518 (712)
T ss_pred CCcccCccCHHHHH-----HHHHHHHHHHH
Confidence 55667788999986 35566666643
No 359
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=58.25 E-value=75 Score=28.19 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 010914 193 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE-FNNFQFQLIAHQEERDAISSKIE 271 (497)
Q Consensus 193 ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e-~n~~q~ql~~~~ee~~sl~~q~~ 271 (497)
..|+...++-.|+|-.-+.+.|.++|.+...+..||.+++.+...++. .-|-. -..---.-..++.++..+..++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~---~~~~~~g~~~~~~~~~l~~eLk~a~~qi~ 79 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS---LAKLSEGGSPSGREAELQEELKLAREQIN 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cccCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 456666666677777778889999999999999999888876554442 11100 00000001234666677777777
Q ss_pred HHHHHHHHHhhcc
Q 010914 272 VSQAHLELLKRTN 284 (497)
Q Consensus 272 ~~~~qLdkL~ktN 284 (497)
.....+-+|.--|
T Consensus 80 ~Ls~kv~eLq~EN 92 (96)
T PF11365_consen 80 ELSGKVMELQYEN 92 (96)
T ss_pred HHhhHHHHHhhcc
Confidence 7777777776554
No 360
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=58.15 E-value=1.1e+02 Score=25.63 Aligned_cols=75 Identities=13% Similarity=0.258 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 206 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER--YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~--~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
.-+++...+.++.+.-..+...|..+..+..++.+.+.. .+..-- +...+..+..+...+..++...+..+++|+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445555555555555555555555555444442221 121112 444555555555666666666666666664
No 361
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=58.12 E-value=4.1e+02 Score=33.37 Aligned_cols=27 Identities=37% Similarity=0.380 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEKQ 220 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~e 220 (497)
.++.+|..++..+..++.++++.+.++
T Consensus 822 ~E~~~Ek~~~~~~~~~~rke~E~~~k~ 848 (1294)
T KOG0962|consen 822 DELRKEKSKKQESLDKLRKEIECLQKE 848 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444444444333
No 362
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=58.05 E-value=3.2e+02 Score=31.75 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=16.0
Q ss_pred CchhhHHHHHHHhhHHHHHHHH
Q 010914 434 QENWTKALKYTLCNLKWALFWF 455 (497)
Q Consensus 434 ~e~WTkAlK~lLtNlKWlLaw~ 455 (497)
-++|...+|-+..+++=+|-++
T Consensus 576 ~e~llP~Lk~~~~~~~q~Le~~ 597 (632)
T PF14817_consen 576 LERLLPRLKRLVQKAQQALEYC 597 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888777777766554
No 363
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=58.04 E-value=1.9e+02 Score=28.16 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQ 255 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L-~~eE~~~w~e~n~~q~q 255 (497)
..++.+-..|..++++|+.+..++......++....+. ..+++.+=.++..++.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666665555443 33333443444444433
No 364
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=57.96 E-value=2.1e+02 Score=28.67 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
..+..|..+.++..+++-+....+.|..-++.|-...-.+.-++..+.+.+.....+-+++...+.+|.+
T Consensus 103 raE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 103 RAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 3334445555555666656555556666666666666666666666666665555555555555555544
No 365
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=57.82 E-value=2.5e+02 Score=29.59 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010914 206 EERKLEAAIEETEKQNAE 223 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~ 223 (497)
+|.++.+.|.+|+++.+.
T Consensus 132 ~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 132 EERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 366
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.74 E-value=1.8e+02 Score=27.83 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 255 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~q 255 (497)
+.++.|.++|...+..|+.+...+...++.+......+++.|.+.-++++.+.-.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 4466677777777777777777777666666666667777776666666666543
No 367
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=57.65 E-value=56 Score=37.78 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
|+.+|+.|++|+++ +++......++..+..-++.+.++.++..++||+.-+.+....+.
T Consensus 2 LRdkL~~Lq~ek~~------E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 2 LRDKLELLQQEKQK------ERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666552 222222334444455567788888888888888888877655554
No 368
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=57.60 E-value=82 Score=26.99 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 207 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 249 (497)
Q Consensus 207 E~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~ 249 (497)
.++|.+++.+|+.....|-..+...+.|-+.|+.+- +|.++|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-EYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456777888888888888888888888777776543 455544
No 369
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=57.58 E-value=3.1e+02 Score=30.61 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 010914 156 RVLSDKLDKEVDDVTR 171 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~ 171 (497)
+.++.....++..+.+
T Consensus 250 ~~~i~~a~~~i~~L~~ 265 (582)
T PF09731_consen 250 NSLIAHAKERIDALQK 265 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 370
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.20 E-value=2e+02 Score=30.20 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 204 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 204 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
|--.+.|+..|++-+....+-+.||.+|+.++.++.
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666665553
No 371
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.00 E-value=3.4e+02 Score=31.53 Aligned_cols=135 Identities=16% Similarity=0.241 Sum_probs=66.2
Q ss_pred HHHHHhhcCCCccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCCCHHHHHHHHHHHHHHHHHHHH
Q 010914 134 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACL-QRLEGEARDVLSEADFLKEKLKIEEEERKLEA 212 (497)
Q Consensus 134 ~~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL-~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~ 212 (497)
.++--||+..+..|. +|...|-. +-.-+++...+- ++-| ..++... .-..+++.+|.+++...-.+..+
T Consensus 16 ~K~~kiL~~~~~~dk----d~~~aL~~-ls~~~~eN~~~~---RRnLr~~iE~~~--l~iN~e~l~ef~~i~~~l~~v~e 85 (655)
T KOG3758|consen 16 NKLSKILNNRTYSDK----DALAALRA-LSTFFEENSLRA---RRNLRSDIESRL--LKINEEFLKEFKEIKRRLDRVSE 85 (655)
T ss_pred HHHHHHHHhcccCcH----HHHHHHHH-HHHHHHhhhHHH---HhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 456678999999986 55554332 333343332222 1111 1111110 00124566777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
.+..+..-++.+..++..-......|-+.=++|-.+... +....+-..+....|...+..++.|..
T Consensus 86 ~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~----le~r~kii~~Fl~~fqLs~~E~~~L~~ 151 (655)
T KOG3758|consen 86 DVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQ----LELRKKIINAFLDNFQLSSEELDLLTE 151 (655)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccChHHHHHHhc
Confidence 777777777766666655544443332221112111111 111122223444556666666666666
No 372
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=56.83 E-value=2.4e+02 Score=29.07 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
|..|..+++...++|.++|+-+..+..+|+.-+..+|.+.+.
T Consensus 118 Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 118 LYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777788888888888888888877777777777766544
No 373
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=56.81 E-value=7.7 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhcccCCCceee
Q 010914 269 KIEVSQAHLELLKRTNVLNDAFPI 292 (497)
Q Consensus 269 q~~~~~~qLdkL~ktNV~Nd~F~I 292 (497)
+++..+..|.+..+.|+|-..+.|
T Consensus 154 ~~~~f~~~l~r~~~~N~fi~~~~I 177 (759)
T PF01496_consen 154 KIESFERILWRATRGNIFIRFSEI 177 (759)
T ss_dssp HHHHHHHHHHHHHTT-----S---
T ss_pred hHHHHHHHHHHhccCCeEEEEEee
Confidence 455566778888888888765544
No 374
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.61 E-value=1.7e+02 Score=30.70 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=10.7
Q ss_pred CchhhHHHHHHHhhHHHH
Q 010914 434 QENWTKALKYTLCNLKWA 451 (497)
Q Consensus 434 ~e~WTkAlK~lLtNlKWl 451 (497)
..+|+...+-+=..++.+
T Consensus 293 ~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 293 KERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHCCHCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccc
Confidence 467887665555554444
No 375
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=56.41 E-value=66 Score=36.56 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 218 EKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 218 E~e~~~l~~El~~le~e~~~L~ 239 (497)
+++.+.++++|.++|.+..+++
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~ 583 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAE 583 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555554444443
No 376
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=56.40 E-value=3.2e+02 Score=34.29 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccCCCce
Q 010914 212 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI-EVSQAHLELLKRTNVLNDAF 290 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~-~~~~~qLdkL~ktNV~Nd~F 290 (497)
.++.++..+...+...+..+.+....+....++...++.....+-.. .+.. .+.+ ...+.--..|+..+-.|..|
T Consensus 885 ~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~~~---aqk~~~~ine~~s~l~~~~~~~~~~ 960 (1294)
T KOG0962|consen 885 EDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SEKL---AQKKRNDINEKVSLLHQIYKLNECF 960 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444444444444444444444444444444444443211 1100 0111 11112234444455555666
Q ss_pred eeeecCCee
Q 010914 291 PIWHDGEFG 299 (497)
Q Consensus 291 ~I~hdG~fG 299 (497)
..-++.-+|
T Consensus 961 ~~~~~~~~~ 969 (1294)
T KOG0962|consen 961 EQYGFDDLR 969 (1294)
T ss_pred HHHhhhhhc
Confidence 666666665
No 377
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=56.18 E-value=1.6e+02 Score=26.74 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 205 EEERKLEAAIEETEKQNAEV 224 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l 224 (497)
.+-....+.+.+|+.+..++
T Consensus 51 ~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 51 AQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333343333333
No 378
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.93 E-value=1.7e+02 Score=32.95 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=13.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010914 241 LEERYWQEFNNFQFQLIAHQEERDAIS 267 (497)
Q Consensus 241 eE~~~w~e~n~~q~ql~~~~ee~~sl~ 267 (497)
.++.||.+...+.-.+.-+..+.+.+.
T Consensus 453 ~~~~~~iD~~~~~e~~e~lt~~~e~l~ 479 (508)
T KOG3091|consen 453 LQESYWIDFDKLIEMKEHLTQEQEALT 479 (508)
T ss_pred cccceeechhhhHHHHHHHHHHHHHHH
Confidence 334566666555554444444444433
No 379
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=55.75 E-value=4e+02 Score=31.32 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 283 (497)
+.+++..+..-.+.......++......|...=+.+-..+..++.+..+...+++-..-+..+++..+.+|++.
T Consensus 543 l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444445556666666666666666666666666677777776653
No 380
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=55.71 E-value=43 Score=25.86 Aligned_cols=33 Identities=27% Similarity=0.524 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
+-...+..+..++..|+.+...|.+++..|+.|
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556666777777777777777777766643
No 381
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=55.43 E-value=1.9e+02 Score=30.87 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 010914 209 KLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQEERDAIS 267 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L~-~eE~~~w~e~n~~q~ql~~~~ee~~sl~ 267 (497)
.|.++-+.|+.+..++.++++++-.+..+++ ++=.+|-..+|+-+..+.++++.+..+.
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 3333334444444444444444433333332 2223566667777777766665555443
No 382
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=55.27 E-value=2.7e+02 Score=32.97 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.|++|++.+.+.+++++++++++...+++|..+.++|.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666666666677777666666666666666655554
No 383
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=55.25 E-value=46 Score=31.08 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
||.+...|.++++.|..|.+++..|+..++
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 384
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.08 E-value=1.4e+02 Score=33.58 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=8.7
Q ss_pred ccccCCCCCCCceEEE
Q 010914 79 EASQSGKAMDESFVVI 94 (497)
Q Consensus 79 ~~~~~~~~~~eS~v~l 94 (497)
-+..+++..++-||.+
T Consensus 181 yt~~p~~~~~~g~vtl 196 (508)
T KOG3091|consen 181 YTRNPSRTDDEGFVTL 196 (508)
T ss_pred ccCCCCccCCCCeeee
Confidence 3344555555666664
No 385
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=54.78 E-value=1.3e+02 Score=25.18 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 247 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~ 247 (497)
.-+..|+.....+..++..++.+.+....++.+...+.+.++.+.++--.
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~ 101 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRRE 101 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777778888888888888888888888887777777766554333
No 386
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=54.70 E-value=4e+02 Score=30.91 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010914 163 DKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 163 d~qle~~~~E~d~Y~~fL~~L~ 184 (497)
+..+..+++|+..-..-+....
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777788877777776554
No 387
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.64 E-value=3.6e+02 Score=30.39 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=24.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 149 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 149 PLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
|-..+..++.-.+=+....+.+.+.+.|+.....++.
T Consensus 92 ~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~ 128 (630)
T KOG0742|consen 92 PYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQLKS 128 (630)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566677766666666666677777778887766553
No 388
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=54.48 E-value=1.8e+02 Score=26.91 Aligned_cols=58 Identities=10% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 224 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 224 l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
|.+.|..+..+.++..+.-+..=.+.+..+.++..+.++.+++.....-....++.|.
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444455566666666677777777766666666666654
No 389
>PRK10698 phage shock protein PspA; Provisional
Probab=54.24 E-value=2.3e+02 Score=28.15 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 154 CMRVLSDKLDKEVDDVTRDI 173 (497)
Q Consensus 154 C~d~Lle~Ld~qle~~~~E~ 173 (497)
=.+.++..|...+..+....
T Consensus 28 ~l~q~i~em~~~l~~~r~al 47 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTS 47 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555553333
No 390
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.15 E-value=1.7e+02 Score=31.32 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
+.|++++.++++....|..-++.+.+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888887776654
No 391
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=54.07 E-value=2.5e+02 Score=29.67 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQR 182 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~ 182 (497)
....++.++++++.++.+++.|...+..
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677777777777777777766553
No 392
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=53.99 E-value=1.9e+02 Score=32.87 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhc
Q 010914 172 DIEAYEACLQRLEG 185 (497)
Q Consensus 172 E~d~Y~~fL~~L~~ 185 (497)
+.+.|++-++.|+.
T Consensus 192 ~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 192 DLEEYKKRLEAIKK 205 (555)
T ss_pred hHHHHHHHHHHHHh
Confidence 33445555555444
No 393
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=53.76 E-value=1.2e+02 Score=28.07 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEER 208 (497)
Q Consensus 196 l~~e~~~Le~EE~ 208 (497)
+..+.+.|+++|.
T Consensus 32 LEae~q~L~~kE~ 44 (126)
T PF09403_consen 32 LEAEYQQLEQKEE 44 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544443
No 394
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=53.43 E-value=1.8e+02 Score=26.46 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
+..+.-++.+..+...|.-.+.++.-.. +-...|.+.-+....+...+++.+.++.+++..+|...+.
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~------~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLIL------EMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666555543211 1112233444444455555555555555555555544443
No 395
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=53.41 E-value=11 Score=35.31 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.1
Q ss_pred CccceeeEEecCCCCchhhHHHHHHHhh
Q 010914 420 DKVENYSITQSFNKQENWTKALKYTLCN 447 (497)
Q Consensus 420 dkIgg~SIkl~~n~~e~WTkAlK~lLtN 447 (497)
.-|-++++-+-.|.++.|.++++||+.|
T Consensus 110 ~~v~~~~~diRgntD~sW~Rg~~~l~~n 137 (140)
T PF11684_consen 110 KVVRGRSVDIRGNTDESWRRGARYLVKN 137 (140)
T ss_pred CEEeeeeeeEecCcHHHHHHHHHHHHHh
Confidence 3456788888889999999999999887
No 396
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=53.38 E-value=4.2e+02 Score=32.10 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=39.3
Q ss_pred eeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCc-------------eeeeecCCCceeee
Q 010914 292 IWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYR-------------IKIIPMGSYPRIMD 358 (497)
Q Consensus 292 I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~kf~y~-------------YkLvPmGS~SkI~~ 358 (497)
|-|=.+=||.-.+|.-+- +..-+-.|+--.|--+.++...+.+.+.. |+ . ++-+-.|.|+.|-.
T Consensus 804 i~~lE~g~~~a~lr~~~~-slk~~l~e~ar~Wasl~~~~~vl~e~l~~-~k-e~rlP~vi~~A~~~F~hlT~G~Yt~Iy~ 880 (984)
T COG4717 804 IAQLEGGGTVAELRQRRE-SLKEDLEEKARKWASLRLAVQVLEEALRL-FK-ERRLPAVIQEASEFFMHLTDGRYTGIYT 880 (984)
T ss_pred HHHHhcCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hhhchHHHHHHHHHHhhccCCceeeeec
Confidence 333334466677776542 23456678888888888888888876641 11 1 23345688888853
No 397
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=53.23 E-value=2.3e+02 Score=29.61 Aligned_cols=121 Identities=6% Similarity=0.103 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccc-cCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 010914 154 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLE--GEAR-DVLSEADFLKEKLKIEEEERKLEA-------AIEETEKQNAE 223 (497)
Q Consensus 154 C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~--~~~~-~~~~ee~l~~e~~~Le~EE~~L~~-------eL~~LE~e~~~ 223 (497)
=.+.=++.++++++.++.+...|+.--.-+. .+.. ....-.++..++.+++.+...+.. ++..++.+.+.
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 3455667778888888888888877322111 1110 000124455556666666555543 35556666666
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 224 VNAELKELELKSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 224 l~~El~~le~e~~~L-~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
++++|.+...+...- ......--.+|..++.+..-.+.-..++..+++.+.
T Consensus 254 l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 254 LRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666554433221 001112233677777777777777777878877776
No 398
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=52.90 E-value=1.7e+02 Score=31.86 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=19.2
Q ss_pred chhhHHHHHHHHHhhcCCCc-cCCcchHH
Q 010914 126 FHSTITVLKRAFEIATSQTQ-VEQPLCLE 153 (497)
Q Consensus 126 ls~~i~~l~~lFdIlSs~s~-IDhPLC~e 153 (497)
++.-+.+|.|=|.|+-.+.+ -..|.|.+
T Consensus 57 inDP~~ALqRDf~~l~Ek~D~EK~p~ct~ 85 (561)
T KOG1103|consen 57 INDPFAALQRDFAILGEKIDEEKIPQCTE 85 (561)
T ss_pred cCChHHHHHHHHHHHhccccccccceecc
Confidence 45556888899999866543 34577765
No 399
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=52.89 E-value=1.8e+02 Score=26.41 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010914 200 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 272 (497)
Q Consensus 200 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~ 272 (497)
+..++.+-..+..++.++..+.......+...+ ...+.++..|=.+.+.++....++.++..-|..|++.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444433333332222 2234445555666666666666666666666666553
No 400
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=52.83 E-value=3.7e+02 Score=29.98 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=8.3
Q ss_pred CCCChHHHHHHHH
Q 010914 312 IPVEWDEINAAWG 324 (497)
Q Consensus 312 ~~V~W~EINAAwG 324 (497)
..|+-.|=|+-+-
T Consensus 286 Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 286 EEVDHREENERLQ 298 (552)
T ss_pred HHhhHHHHHHHHH
Confidence 5667777776653
No 401
>PLN02372 violaxanthin de-epoxidase
Probab=52.79 E-value=1.9e+02 Score=31.94 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 010914 230 ELELKSKRFKELEERYWQEFNNFQ 253 (497)
Q Consensus 230 ~le~e~~~L~~eE~~~w~e~n~~q 253 (497)
.+++...+|++.|..|.++++.-+
T Consensus 407 ~~~~~~~~l~~~~~~f~~~lskee 430 (455)
T PLN02372 407 ALEEGLKELEQDEENFLKELSKEE 430 (455)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH
Confidence 345555555555555665544433
No 402
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=52.78 E-value=85 Score=27.74 Aligned_cols=47 Identities=28% Similarity=0.486 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 010914 206 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 253 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q 253 (497)
|=.+|-+++..+-+...+|+.+|..+.....+-+..+ +.+.+|+.++
T Consensus 23 EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~K 69 (101)
T PF07303_consen 23 EYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHH
Confidence 3344556666666666666666666665555566666 7888888885
No 403
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.75 E-value=1e+02 Score=30.52 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 249 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 249 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
.....-++...+++-+.|+.-+..=+..|+.|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666677777777777777777777777775
No 404
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=52.60 E-value=2.7e+02 Score=28.35 Aligned_cols=40 Identities=30% Similarity=0.269 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 010914 260 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 308 (497)
Q Consensus 260 ~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGr 308 (497)
+.+..+++++++.++.+|++ + +-.=-.||.+..++ ...|.
T Consensus 185 ~~~~~~~~~~l~~a~~~l~~---~-----~i~AP~dG~V~~~~-~~~G~ 224 (327)
T TIGR02971 185 QAEVKSALEAVQQAEALLEL---T-----YVKAPIDGRVLKIH-AREGE 224 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhc---C-----EEECCCCeEEEEEe-cCCCC
Confidence 34445555666666555442 2 12223477766665 45664
No 405
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=52.59 E-value=1.8e+02 Score=26.37 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010914 200 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 254 (497)
Q Consensus 200 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ 254 (497)
+..|..........+..++.+.+....++.+...+.+.++.+-++...+|...+.
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~~~e~ 127 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEARLAEN 127 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888888888888888888888888888888877777765543
No 406
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=52.55 E-value=3e+02 Score=28.84 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 256 LIAHQEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 256 l~~~~ee~~sl~~q~~~~~~qLd 278 (497)
...+..++..-+.+++.++++|.
T Consensus 179 F~rlK~ele~tk~Klee~Qnels 201 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELS 201 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445566666777777777664
No 407
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=52.40 E-value=1.3e+02 Score=34.59 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.|+.++|....+|..+|+++-...+++.++|...+.|+.+|+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344455555555566666666555555555555555555554
No 408
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.34 E-value=64 Score=25.94 Aligned_cols=37 Identities=24% Similarity=0.494 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+||.+-.++...+..+++|.+++..++++++.-.+++
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666665544333
No 409
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=52.14 E-value=3.4e+02 Score=29.38 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 212 AAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+|=..+|-+.+++.+|..+.++|...|
T Consensus 141 EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhHHHHHHH
Confidence 333333333333444444444444444
No 410
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=51.99 E-value=4.8e+02 Score=31.05 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010914 162 LDKEVDDVTRDIEAYEA 178 (497)
Q Consensus 162 Ld~qle~~~~E~d~Y~~ 178 (497)
|+.+++.++.+..+-.+
T Consensus 117 lqerLelaE~~l~qs~r 133 (916)
T KOG0249|consen 117 LQERLELAEPKLQQSLR 133 (916)
T ss_pred hhHHHHHhhHhhHhHHh
Confidence 44555555555544333
No 411
>PLN02320 seryl-tRNA synthetase
Probab=51.89 E-value=1.1e+02 Score=34.37 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=22.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 010914 377 RYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 418 (497)
Q Consensus 377 kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~ 418 (497)
+=|.+...|-.+++...+.++ .|.|||++-
T Consensus 353 ~peqs~~e~e~ll~~~e~i~~------------~LgLpyrvv 382 (502)
T PLN02320 353 RPEESESFHEELIQIEEDLFT------------SLGLHFKTL 382 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHH------------HcCCCeEEE
Confidence 347888888888888777765 378888774
No 412
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=51.57 E-value=2.5e+02 Score=27.70 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL--KSKRFKELEERYWQEFNNFQFQLIAHQ--------EERDAIS 267 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~--e~~~L~~eE~~~w~e~n~~q~ql~~~~--------ee~~sl~ 267 (497)
+++..|..+..+|.+.+..|.+++.-+++||+.|.. -+.++++.-.+.=++...+...+..+. ++...+.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhcccCCCc
Q 010914 268 SKIEVSQAHLELLKRTNVLNDA 289 (497)
Q Consensus 268 ~q~~~~~~qLdkL~ktNV~Nd~ 289 (497)
..|+-.-++..+-++ +|++.
T Consensus 159 ~~y~~~~~~wrk~kr--mf~ei 178 (201)
T KOG4603|consen 159 REYQKYCKEWRKRKR--MFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHH--HHHHH
No 413
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.26 E-value=48 Score=26.59 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
+..+..++..++++++++.+++.+++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444
No 414
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=51.06 E-value=1.3e+02 Score=29.49 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010914 165 EVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 165 qle~~~~E~d~Y~~fL~~L~ 184 (497)
+++...+=++.|+.-+..|+
T Consensus 106 Elq~mr~~ln~FR~qm~dlE 125 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLE 125 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666555
No 415
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=51.03 E-value=98 Score=30.81 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010914 265 AISSKIEVSQAHLELLK 281 (497)
Q Consensus 265 sl~~q~~~~~~qLdkL~ 281 (497)
...+++..++.+|+.++
T Consensus 113 ~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 113 AAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444454444
No 416
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.93 E-value=3.8e+02 Score=29.55 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 010914 319 INAAWGQACLLLHTMCQYFR 338 (497)
Q Consensus 319 INAAwGQ~~LLL~tla~~l~ 338 (497)
||--+--+..||.+++...+
T Consensus 393 iNiiLalm~VlLvfVSTIa~ 412 (455)
T KOG3850|consen 393 INIILALMTVLLVFVSTIAN 412 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56666666667777776663
No 417
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.81 E-value=4.8e+02 Score=30.71 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
.+.+..++..+.++++.|....+.+.+...+ ..+.++...++..-+..-.+++.++..|+.+..+..+.+.-..++..-
T Consensus 421 ~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~ 500 (716)
T KOG4593|consen 421 EKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESEL 500 (716)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 238 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 275 (497)
Q Consensus 238 L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 275 (497)
+.+-=.+|-++.+.++.+--.+......-..+=++..+
T Consensus 501 ~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~ 538 (716)
T KOG4593|consen 501 LREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEEN 538 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
No 418
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.37 E-value=3.2e+02 Score=29.92 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 010914 319 INAAWGQACLLLHTMCQYF 337 (497)
Q Consensus 319 INAAwGQ~~LLL~tla~~l 337 (497)
||--+--+..||..++.-+
T Consensus 344 inllL~l~~vlLv~vSt~~ 362 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVA 362 (395)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555444
No 419
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=50.26 E-value=3.4e+02 Score=28.86 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEE-TEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 203 Le~EE~~L~~eL~~-LE~e~~~l~~El~~le~e~~~L 238 (497)
++.+|++|.+.++. -+++.+++..+|..|+.-+.++
T Consensus 51 VqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRi 87 (324)
T PF12126_consen 51 VQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRI 87 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455555544442 3444555555555555444433
No 420
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=49.81 E-value=5.8 Score=35.47 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 242 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE 242 (497)
+|+.+.-++.+++..||.+...+..++.+|+.+..+|+.++
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ----------------------------------------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666666666666666666666666655555443
No 421
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.63 E-value=3.2e+02 Score=28.39 Aligned_cols=28 Identities=7% Similarity=0.312 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
++.=|.++.+++++....+.-++.|..+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~q 60 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQ 60 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666543
No 422
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=49.48 E-value=3.2e+02 Score=28.25 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010914 256 LIAHQEERDAISSKIEVSQAHLELLKRTN 284 (497)
Q Consensus 256 l~~~~ee~~sl~~q~~~~~~qLdkL~ktN 284 (497)
+..+.+.++.|....-....++|.++|.+
T Consensus 221 lnah~~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 221 LNAHMDSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 44455555666666666666777777654
No 423
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.45 E-value=94 Score=24.61 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
..|+.++..|+.+...+..++..|+.+...|
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 424
>PF13166 AAA_13: AAA domain
Probab=49.36 E-value=4.4e+02 Score=29.92 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 010914 160 DKLDKEVDDV 169 (497)
Q Consensus 160 e~Ld~qle~~ 169 (497)
+.+...++.+
T Consensus 332 ~~l~~~l~~l 341 (712)
T PF13166_consen 332 EALKEELEEL 341 (712)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 425
>PRK09343 prefoldin subunit beta; Provisional
Probab=49.24 E-value=2e+02 Score=25.94 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 010914 264 DAISSKIEVSQAHLE 278 (497)
Q Consensus 264 ~sl~~q~~~~~~qLd 278 (497)
..+..++.-.+.+|.
T Consensus 95 ~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 95 KKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 426
>PF14992 TMCO5: TMCO5 family
Probab=49.16 E-value=3.1e+02 Score=28.77 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHH
Q 010914 212 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD--AISSKIEVSQ 274 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~--sl~~q~~~~~ 274 (497)
..++.+..+++.++.++.+++.......+.++.--.....++-.+...+++++ -++.++..++
T Consensus 116 ~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 116 NKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQ 180 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555544444443333333333344444444444443 3334444444
No 427
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.06 E-value=5.1e+02 Score=30.52 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010914 204 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 204 e~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 283 (497)
.+|...+...++...+...++.+.+..|+.+....+..=++.-..+++....+.-+...+.-++..+......|.++++-
T Consensus 544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444444444444444444444444444333333333334444444444444444444444445555555555554
Q ss_pred cc
Q 010914 284 NV 285 (497)
Q Consensus 284 NV 285 (497)
+.
T Consensus 624 ~~ 625 (698)
T KOG0978|consen 624 ES 625 (698)
T ss_pred cc
Confidence 43
No 428
>smart00338 BRLZ basic region leucin zipper.
Probab=49.04 E-value=71 Score=25.34 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 209 KLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
.|+.++..|+.+..+|..++..|+.+...|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 429
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=48.98 E-value=1e+02 Score=35.15 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNA 222 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~ 222 (497)
+++.++|++..+|++++.+++.+.+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666655553
No 430
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=48.93 E-value=1.8e+02 Score=26.13 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 209 KLEAAIEETEKQNAEVNAELKELELKSK 236 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~le~e~~ 236 (497)
...+++..|.+.....-++|.+++.+.+
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k 77 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQK 77 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555665555443
No 431
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.90 E-value=4.5e+02 Score=32.46 Aligned_cols=30 Identities=7% Similarity=0.262 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 010914 154 CMRVLSDKLDKEVDDVTRDIE-----AYEACLQRL 183 (497)
Q Consensus 154 C~d~Lle~Ld~qle~~~~E~d-----~Y~~fL~~L 183 (497)
|...-++..+.+..+++.... .|..|..++
T Consensus 729 ~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~i 763 (1141)
T KOG0018|consen 729 EIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRI 763 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444455556666666555443 367776665
No 432
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.63 E-value=1.5e+02 Score=34.17 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-CCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEA-RD-VLSEADFLKEKLKIEEE-------ERKLEAAIEETEKQNAEVNAELKE 230 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~-~~-~~~ee~l~~e~~~Le~E-------E~~L~~eL~~LE~e~~~l~~El~~ 230 (497)
..|.++++++.+-|....--|++++... +. ..... ....+..||+| -.+|..|++.+++..++++.....
T Consensus 462 ~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~-d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~ev 540 (852)
T KOG4787|consen 462 ISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYS-DELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEV 540 (852)
T ss_pred HHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHH
Confidence 3467777777777777776776665322 11 01100 01111222222 234667777777766666666655
Q ss_pred HH
Q 010914 231 LE 232 (497)
Q Consensus 231 le 232 (497)
|.
T Consensus 541 L~ 542 (852)
T KOG4787|consen 541 LA 542 (852)
T ss_pred HH
Confidence 53
No 433
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.53 E-value=1.7e+02 Score=31.13 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=10.8
Q ss_pred cc-cccccCcccccCCCCC
Q 010914 45 LG-STRMDNSFVVLPKQRP 62 (497)
Q Consensus 45 ~~-~~~~d~s~~vl~~~~~ 62 (497)
+| |+-||+=|++==...+
T Consensus 53 ~GKsTLmdtLFNt~f~~~p 71 (406)
T KOG3859|consen 53 LGKSTLMDTLFNTKFESEP 71 (406)
T ss_pred ccHHHHHHHHhccccCCCC
Confidence 45 6777877776544333
No 434
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=48.37 E-value=2.3e+02 Score=26.42 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 249 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~ 249 (497)
+.|..-|++||+++..|..+++..+-. |+++.+.|.+..
T Consensus 54 ~~l~~llkqLEkeK~~Le~qlk~~e~r---LeQEsKAyhk~n 92 (129)
T PF15372_consen 54 ESLNQLLKQLEKEKRSLENQLKDYEWR---LEQESKAYHKAN 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 556677888888988888888887753 566666555533
No 435
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.05 E-value=1.8e+02 Score=25.08 Aligned_cols=27 Identities=11% Similarity=0.369 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNA 222 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~ 222 (497)
+..++++|..+..+|.++|...+....
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~ 63 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARAN 63 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 334444444444444444444444333
No 436
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=47.35 E-value=5.6e+02 Score=32.42 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
.....-+......+...+..|...|+++.
T Consensus 699 ~~f~~ll~~k~~~~~~~~~r~~~gl~kl~ 727 (1395)
T KOG3595|consen 699 GTFKKLLKEKRSEVRLRKLRLELGLDKLK 727 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 34455566666677777777777777765
No 437
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=47.29 E-value=1.5e+02 Score=30.58 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
+..|..+|+++.+.+..++..|..|
T Consensus 219 ~~ae~seLq~r~~~l~~~L~~L~~e 243 (289)
T COG4985 219 YVAEKSELQKRLAQLQTELDALRAE 243 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555555555444
No 438
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=47.21 E-value=1.2e+02 Score=32.50 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 010914 169 VTRDIEAYEACLQRLE 184 (497)
Q Consensus 169 ~~~E~d~Y~~fL~~L~ 184 (497)
..+..+.|+.+++.+.
T Consensus 213 ~~r~~~Yf~~l~~~f~ 228 (406)
T PF02388_consen 213 SIRSLEYFENLYDAFG 228 (406)
T ss_dssp ----HHHHHHHHHHCC
T ss_pred cccCHHHHHHHHHhcC
Confidence 3466777888888773
No 439
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.21 E-value=3.7e+02 Score=29.84 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q 010914 221 NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA-HQEERDAISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 221 ~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~-~~ee~~sl~~q~~~~~~qLdkL~kt 283 (497)
..++++++++|...+..+..+-...-.+||.....-.. .-+.+.++.-.....+..-+.|+..
T Consensus 175 ~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lktq 238 (446)
T KOG4438|consen 175 VKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQ 238 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444555666666554443 2222333444444444445556654
No 440
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=47.03 E-value=1.7e+02 Score=33.98 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
+.++++.+-..+..+|+.......+...++..+
T Consensus 176 ~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~ 208 (670)
T KOG0239|consen 176 ESLKLESDLGDLVTELEHVTNSISELESVLKSA 208 (670)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444455555555555444444444444443
No 441
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=46.96 E-value=3.1e+02 Score=27.47 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccc----ccCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 010914 153 ECMRVLSDKLDKEV-DDVTRDIEAYEACLQRLEGEA----RDVLSEADFLKEKLKIEE-------EERKLEAAIEETEKQ 220 (497)
Q Consensus 153 eC~d~Lle~Ld~ql-e~~~~E~d~Y~~fL~~L~~~~----~~~~~ee~l~~e~~~Le~-------EE~~L~~eL~~LE~e 220 (497)
+..+.+++.|+..+ +++..=++.|......+++-. ..-++-+.......+|.. -..+.+++++.++..
T Consensus 75 ~~~d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ 154 (211)
T cd07611 75 EKCDLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKV 154 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 44455666665554 445555555666555554321 111222333333344422 112344455555555
Q ss_pred HHHHHHHHHH----H--------HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010914 221 NAEVNAELKE----L--------ELKSKRFKELEERYWQEFNNFQFQLIAH 259 (497)
Q Consensus 221 ~~~l~~El~~----l--------e~e~~~L~~eE~~~w~e~n~~q~ql~~~ 259 (497)
.+.++.+|.+ | .--.+.+-..+.+||.+...+..+|.+.
T Consensus 155 ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~ 205 (211)
T cd07611 155 FEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEV 205 (211)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554332 1 0122344566667777777766666543
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=46.94 E-value=6.2e+02 Score=30.88 Aligned_cols=122 Identities=8% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHH-----------------------HHHHHHHHHHHHHHH
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF-----------------------LKEKLKIEEEERKLE 211 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l-----------------------~~e~~~Le~EE~~L~ 211 (497)
...+.+.+..+..+...+.+....-+..+.. ++++++ .........+..++.
T Consensus 182 y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~-----ls~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 256 (1047)
T PRK10246 182 YGQISAMVFEQHKSARTELEKLQAQASGVAL-----LTPEQVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTRLDELQ 256 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 212 AAIEETEKQNAEVNAELKELELKSKRFKELEE-----RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~-----~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
+++..++.+...+..+....+.+...|+..|. .+|..+.....++...+.+......+++.+...+..+.
T Consensus 257 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 331 (1047)
T PRK10246 257 QEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNTRLQSTMALRARIR 331 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=46.55 E-value=2.8e+02 Score=28.94 Aligned_cols=26 Identities=4% Similarity=0.174 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 256 LIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 256 l~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
+...+.+...++++++.++.+++.+.
T Consensus 160 ~~~~~~~l~~~~~~l~~~~~~l~~~~ 185 (370)
T PRK11578 160 IGTIDAQIKRNQASLDTAKTNLDYTR 185 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 33444455566677777777766544
No 444
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=46.40 E-value=2.2e+02 Score=29.02 Aligned_cols=6 Identities=17% Similarity=0.003 Sum_probs=2.3
Q ss_pred HHHHHH
Q 010914 321 AAWGQA 326 (497)
Q Consensus 321 AAwGQ~ 326 (497)
+.|-+.
T Consensus 261 ~~~~~~ 266 (301)
T PF14362_consen 261 ALLASL 266 (301)
T ss_pred HHHHHH
Confidence 333333
No 445
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.37 E-value=42 Score=26.94 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
..+.+++.+++++.+++.++..+|+.+.+.+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555
No 446
>PRK14160 heat shock protein GrpE; Provisional
Probab=46.03 E-value=3.2e+02 Score=27.37 Aligned_cols=44 Identities=30% Similarity=0.390 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010914 211 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 254 (497)
Q Consensus 211 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ 254 (497)
+..+..++++...+.+++..++.+..++.+.-.+.-.++.+|+.
T Consensus 53 ~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 53 EVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555444333333334444433
No 447
>PF15294 Leu_zip: Leucine zipper
Probab=45.57 E-value=3.8e+02 Score=28.06 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEA 187 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~ 187 (497)
.-|.++++.+..|.+.-..-|+.++...
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~a 155 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQA 155 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777778777777777777654
No 448
>PRK11281 hypothetical protein; Provisional
Probab=45.31 E-value=2.3e+02 Score=34.96 Aligned_cols=78 Identities=21% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI--------SSKIEVSQAHLELLK 281 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl--------~~q~~~~~~qLdkL~ 281 (497)
|++.|.+++.+.++..+++..+..+...++..=++--....+.+.++.+...++.+. .++....+.++..|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333222222233333334444444333321 134455566666676
Q ss_pred hcccCC
Q 010914 282 RTNVLN 287 (497)
Q Consensus 282 ktNV~N 287 (497)
-.|-|+
T Consensus 206 ~~~~~~ 211 (1113)
T PRK11281 206 AQNDLQ 211 (1113)
T ss_pred HHHHHH
Confidence 666655
No 449
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=44.98 E-value=1.7e+02 Score=26.63 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010914 220 QNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH 259 (497)
Q Consensus 220 e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~ 259 (497)
+.......+...+.....+.++..+|++++++-+.+...+
T Consensus 15 ~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~L 54 (125)
T PF03245_consen 15 ALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRL 54 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333334555556666677888888888888776655443
No 450
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=44.91 E-value=2.3e+02 Score=29.89 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+.+|..++.....|...... ..+.-.++..+.+.+-++++.+++.++.+.+.++.++..++......
T Consensus 1 l~el~~~~~~~~~~~r~l~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLD-------------KAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEET 67 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHh-------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred -----------HHHHHHHHHHHhHH
Q 010914 239 -----------KELEERYWQEFNNF 252 (497)
Q Consensus 239 -----------~~eE~~~w~e~n~~ 252 (497)
..+...+.+.|..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (378)
T TIGR01554 68 KRNAGGGNDSGESQDEDRVRAFIKG 92 (378)
T ss_pred ccCCCCCCcchhhhhHHHHHHHHHH
No 451
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=44.79 E-value=5.5e+02 Score=29.65 Aligned_cols=34 Identities=6% Similarity=0.116 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 230 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 230 (497)
.++...|.+.+.....++....+..+++..++.+
T Consensus 420 ~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~ 453 (607)
T KOG0240|consen 420 TERIESLYQQLDQKDDQINKQSQLMEKLKEQLLD 453 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665555665555555555444443
No 452
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.68 E-value=2.1e+02 Score=27.96 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010914 223 EVNAELKELELKSKRFKEL 241 (497)
Q Consensus 223 ~l~~El~~le~e~~~L~~e 241 (497)
+++.||++++.++..++..
T Consensus 124 eL~~eI~~L~~~i~~le~~ 142 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEEI 142 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 453
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=44.50 E-value=5.8e+02 Score=30.76 Aligned_cols=9 Identities=22% Similarity=0.873 Sum_probs=5.3
Q ss_pred CCCCceeee
Q 010914 410 CFKLPYKIE 418 (497)
Q Consensus 410 ~~~LPY~I~ 418 (497)
.|+.||.=+
T Consensus 1151 yFri~F~~d 1159 (1259)
T KOG0163|consen 1151 YFRIPFMRD 1159 (1259)
T ss_pred eeecceecc
Confidence 466777553
No 454
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=44.42 E-value=2.1e+02 Score=32.69 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELK-ELELKSKRFKELEERYWQEFNNFQFQ 255 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~-~le~e~~~L~~eE~~~w~e~n~~q~q 255 (497)
|-++++.+.....+|+++|+ .+-.-..+.+..|++.|++|..+...
T Consensus 520 Lharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~d 566 (604)
T KOG4796|consen 520 LHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRKD 566 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhcC
Confidence 34444444444445555554 33333334578889999999999843
No 455
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=44.38 E-value=4.1e+02 Score=28.15 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=7.5
Q ss_pred HHHHhhcCCCccCCcchH
Q 010914 135 RAFEIATSQTQVEQPLCL 152 (497)
Q Consensus 135 ~lFdIlSs~s~IDhPLC~ 152 (497)
..|+-..+--+||-|+|.
T Consensus 180 ~a~eafg~ir~vdipicd 197 (445)
T KOG2891|consen 180 KAFEAFGEIRNVDIPICD 197 (445)
T ss_pred HHHHHhccceecCCcccc
Confidence 334444344444444443
No 456
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.04 E-value=5.1e+02 Score=29.10 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010914 230 ELELKSKRFKELEERYWQEFNNFQFQLIAH 259 (497)
Q Consensus 230 ~le~e~~~L~~eE~~~w~e~n~~q~ql~~~ 259 (497)
..+++...|++.++++-.+|.++-.+..+.
T Consensus 96 ~~~ek~~~l~~~~~~L~~~F~~LA~~ile~ 125 (475)
T PRK10361 96 HADDKIRQMINSEQRLSEQFENLANRIFEH 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777777777777776665443
No 457
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=43.90 E-value=1.4e+02 Score=24.09 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010914 163 DKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 163 d~qle~~~~E~d~Y~~fL~~L~ 184 (497)
+.++..++++.+.+...+.+++
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 458
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=43.88 E-value=1.1e+02 Score=32.73 Aligned_cols=14 Identities=36% Similarity=0.290 Sum_probs=9.5
Q ss_pred cchhHHHHHHHHHH
Q 010914 376 TRYDKAMTLFLSCL 389 (497)
Q Consensus 376 ~kFD~AM~afL~cl 389 (497)
.-||.||...|.-|
T Consensus 242 ~~~~lai~H~lSHl 255 (420)
T PF07407_consen 242 DINDLAIMHLLSHL 255 (420)
T ss_pred CcchHHHHHHHhhc
Confidence 45788887776643
No 459
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.58 E-value=7.8 Score=44.51 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 256 LIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 256 l~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
...++++..++....+....+.+.|+
T Consensus 393 ~~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 393 NKQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444434333333333444444
No 460
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.40 E-value=4.4e+02 Score=30.06 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=12.5
Q ss_pred CccceeeEEecCCCCchhhHHHHHH
Q 010914 420 DKVENYSITQSFNKQENWTKALKYT 444 (497)
Q Consensus 420 dkIgg~SIkl~~n~~e~WTkAlK~l 444 (497)
+.+...+|++..|=+.+-.+|+|-.
T Consensus 497 G~~~~p~l~i~SdLd~ql~~a~~~~ 521 (555)
T TIGR03545 497 GILEDPNLKINSNLDKLLAKAFKKE 521 (555)
T ss_pred cccCCCceeeecCHHHHHHHHHHHH
Confidence 3444455555444455555555544
No 461
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.36 E-value=2.6e+02 Score=25.48 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
...++.-++++.++-.|...|...-+..-.+. .......++++-+.+++.|+.|++...=++....+.|.-+
T Consensus 33 kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~d--------k~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nL 104 (114)
T KOG3501|consen 33 KKISELAKKELEDVGDEKAVYTSVGRMFMLSD--------KAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNL 104 (114)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777777777766544432211 1222334566666677777777777776666666666555
Q ss_pred HHH
Q 010914 236 KRF 238 (497)
Q Consensus 236 ~~L 238 (497)
.++
T Consensus 105 rel 107 (114)
T KOG3501|consen 105 REL 107 (114)
T ss_pred HHH
Confidence 444
No 462
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=43.28 E-value=1.6e+02 Score=27.17 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=4.6
Q ss_pred ecCCeeeeccccCCC
Q 010914 294 HDGEFGTINNFRLGR 308 (497)
Q Consensus 294 hdG~fGTINGlRLGr 308 (497)
.+-+|||| |||.+.
T Consensus 72 ~~l~~G~v-~~R~~~ 85 (149)
T PF07352_consen 72 LKLPFGTV-GFRKST 85 (149)
T ss_dssp EE-SS-EE-------
T ss_pred EEcCCeeE-EEEecC
Confidence 46788998 899885
No 463
>PLN02678 seryl-tRNA synthetase
Probab=43.25 E-value=1.9e+02 Score=32.06 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 010914 381 AMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 417 (497)
Q Consensus 381 AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I 417 (497)
+...|=.++....+++. .+.|||++
T Consensus 301 s~~~~e~~l~~~~~i~~------------~L~lpyrv 325 (448)
T PLN02678 301 SWEMHEEMLKNSEDFYQ------------SLGIPYQV 325 (448)
T ss_pred HHHHHHHHHHHHHHHHH------------HcCCCeEE
Confidence 55555555555555543 36777777
No 464
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.93 E-value=3.2e+02 Score=30.31 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 276 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 276 (497)
..++.+|..+-+++..++++|..++.++.++|...-.+... .....-.+.+.+.-++.....+.+.++++++...
T Consensus 28 ~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l-- 102 (429)
T COG0172 28 VDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTLL-- 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--
Confidence 45666788888999999999999999998888733221111 1123445555666666555555555554443332
Q ss_pred HHHHhhcccCCCceeeeecC
Q 010914 277 LELLKRTNVLNDAFPIWHDG 296 (497)
Q Consensus 277 LdkL~ktNV~Nd~F~I~hdG 296 (497)
|.--|+-.+.=+++-|+
T Consensus 103 ---l~ipNi~~~~VPvg~de 119 (429)
T COG0172 103 ---LTIPNIPHESVPVGKDE 119 (429)
T ss_pred ---HhCCCCCccccCcCCCc
Confidence 44557777776666554
No 465
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=42.42 E-value=1.9e+02 Score=27.41 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA----EVNAELKELELK 234 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~----~l~~El~~le~e 234 (497)
++..+.+++.+..|++.|..-|....++ .+.+.+-...-++|..+|++|+.+.+ +.++++..+...
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~----------i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~ 84 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQ----------IKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKD 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 010914 235 SK 236 (497)
Q Consensus 235 ~~ 236 (497)
..
T Consensus 85 ~a 86 (155)
T PF06810_consen 85 SA 86 (155)
T ss_pred HH
No 466
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=42.40 E-value=3.7e+02 Score=27.05 Aligned_cols=130 Identities=15% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Q 010914 130 ITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERK 209 (497)
Q Consensus 130 i~~l~~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~ 209 (497)
+..++++++++.++ .+.+++.++.-...++..+..-+.-|.++.... ..+......++.+-++
T Consensus 1 M~i~~r~~~~~~a~-----------~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~------A~~~a~~k~~e~~~~~ 63 (225)
T COG1842 1 MGIFSRLKDLVKAN-----------INELLDKAEDPEKMLEQAIRDMESELAKARQAL------AQAIARQKQLERKLEE 63 (225)
T ss_pred CchHHHHHHHHHHH-----------HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETE-------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 270 (497)
Q Consensus 210 L~~eL~~LE-------------------~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 270 (497)
+....++++ .+.+.++..+..++.+...+.+...+.=+....++.++.++......+.++.
T Consensus 64 ~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 64 AQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 010914 271 EVSQAH 276 (497)
Q Consensus 271 ~~~~~q 276 (497)
..+..+
T Consensus 144 ~~akA~ 149 (225)
T COG1842 144 AAAKAQ 149 (225)
T ss_pred HHHHHH
No 467
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.25 E-value=5.3e+02 Score=28.80 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=14.3
Q ss_pred ccccccCcccccCCCCCCCCCCCCCC
Q 010914 46 GSTRMDNSFVVLPKQRPQSHGVPPRP 71 (497)
Q Consensus 46 ~~~~~d~s~~vl~~~~~~~~~~~~~~ 71 (497)
++.+|..||-+-..+.. +-++|+.|
T Consensus 18 as~~meSscss~ss~~G-G~~~p~sP 42 (552)
T KOG2129|consen 18 ASGRMESSCSSHSSHSG-GGHEPFSP 42 (552)
T ss_pred ccccccCCcccccCCCC-CCCCCCCC
Confidence 46678888877655533 22344444
No 468
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=42.07 E-value=1.9e+02 Score=31.43 Aligned_cols=91 Identities=23% Similarity=0.339 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 276 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 276 (497)
.+.+.++++|.......|+..++.++.+++.+...++-.+--+++-.+.-...+.++. .++.+..++......
T Consensus 199 ~~a~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~-------~l~~i~~qL~~L~~~ 271 (379)
T PF04518_consen 199 FMALAKLEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKD-------NLNAISNQLSLLQSL 271 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4556778888888888888888888888777777664322112222233333333333 334455555555555
Q ss_pred HHHHh-----hcccCCCceeeee
Q 010914 277 LELLK-----RTNVLNDAFPIWH 294 (497)
Q Consensus 277 LdkL~-----ktNV~Nd~F~I~h 294 (497)
|.-|. .-+=+..+|+|--
T Consensus 272 L~~L~~~~~~~~~~~~~~F~i~g 294 (379)
T PF04518_consen 272 LAPLSIQGVSDPDEVDGAFKITG 294 (379)
T ss_pred hccceeecCCCCCCcCCceEEEe
Confidence 55443 2344667888854
No 469
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.05 E-value=2e+02 Score=31.34 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 010914 379 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 418 (497)
Q Consensus 379 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~ 418 (497)
+.|...|-.+++-..++.+ .+.|||++-
T Consensus 292 e~s~~~~~~~l~~~~~i~~------------~Lglpyr~v 319 (425)
T PRK05431 292 EDSYAELEELTANAEEILQ------------KLELPYRVV 319 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HcCCcEEEE
Confidence 7888888888777777664 378999883
No 470
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=41.98 E-value=87 Score=31.04 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 257 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~ 257 (497)
+......++++...++.+|..++.+ ++..|++||..|..++.-+.
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~r---l~~~~~~l~~qf~~me~~i~ 235 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEER---LESKEERLRKQFSAMESLIS 235 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666644 67778889999888866554
No 471
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=41.94 E-value=8.5 Score=44.22 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010914 162 LDKEVDDVTRDIEAYEACLQR 182 (497)
Q Consensus 162 Ld~qle~~~~E~d~Y~~fL~~ 182 (497)
++-+...++.|+..|..+++.
T Consensus 310 lq~e~~~Le~el~sW~sl~~~ 330 (722)
T PF05557_consen 310 LQLENEKLEDELNSWESLLQD 330 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344555666677777776664
No 472
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.77 E-value=2.6e+02 Score=25.12 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKE 230 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 230 (497)
.+|...-.-|.+.+-+=+.....|..+|+.
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ 37 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKE 37 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 473
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=41.71 E-value=2.5e+02 Score=24.83 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
++.|..++..+......|...++.|+
T Consensus 15 i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 15 VESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665553
No 474
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=41.61 E-value=1.7e+02 Score=33.37 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCC
Q 010914 237 RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE------VSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLP 310 (497)
Q Consensus 237 ~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~------~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp 310 (497)
.|.+.-+-+...|+.+++.|.+|-.....+.+.-+ ...++ .+||.|.+|-.|++ +.||..=---
T Consensus 65 ~LK~~~q~s~d~y~kYKLKLeR~~~Kk~ki~~sk~~ik~lt~lK~~--L~~r~n~lN~p~~v--------l~n~~vfFnK 134 (574)
T PF07462_consen 65 ELKKKIQVSLDHYGKYKLKLERLLKKKNKISNSKEQIKKLTILKNK--LERRQNLLNNPTSV--------LKNFTVFFNK 134 (574)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCcHHH--------HHHHHHHHhh
Confidence 33333345677888888888888776655433211 12222 34788999877766 3333321111
Q ss_pred CCCCChHHHHHHHHHHHHHHHH
Q 010914 311 KIPVEWDEINAAWGQACLLLHT 332 (497)
Q Consensus 311 ~~~V~W~EINAAwGQ~~LLL~t 332 (497)
...-+=.||-.++--+=.||-.
T Consensus 135 krEaek~eveNtlkNt~iLlky 156 (574)
T PF07462_consen 135 KREAEKKEVENTLKNTEILLKY 156 (574)
T ss_pred hhHHHHHHHHHHhhhHHHHHHH
Confidence 2346778999999999777763
No 475
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.48 E-value=2.3e+02 Score=24.36 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEGEA 187 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~ 187 (497)
.+.+..++..+.++.+.-..-++.+.++.
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~Ged 42 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGED 42 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34455555666666655555555555544
No 476
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=41.41 E-value=4.1e+02 Score=27.28 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
..+.+.++.+++.+..-+..|+..++....
T Consensus 8 ~~t~~~i~~eL~~~~~l~~~yta~l~~~~~ 37 (281)
T PF12018_consen 8 PATTEHIDTELEEAQELCYRYTAVLEKQSQ 37 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356788999999999999999999988754
No 477
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=40.99 E-value=87 Score=28.00 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~l 231 (497)
+.++.+.+++...+..++++.+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 92 LQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 478
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=40.92 E-value=2.2e+02 Score=23.87 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=25.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 247 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 247 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
..|++++..+.....+...|.+++.....+++.|..
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777666666543
No 479
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=40.92 E-value=1.5e+02 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 163 DKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 163 d~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
.+|++.+++....|..-|+.++..
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~r 27 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESR 27 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777776643
No 480
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.64 E-value=4.2e+02 Score=27.09 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=11.0
Q ss_pred eccccCCCCCCCCCChH
Q 010914 301 INNFRLGRLPKIPVEWD 317 (497)
Q Consensus 301 INGlRLGrlp~~~V~W~ 317 (497)
|+...-|--|..||+..
T Consensus 251 i~~~gTG~~~P~~~~fE 267 (269)
T cd07673 251 AESKGTGKERPGPIEFE 267 (269)
T ss_pred HHhcCCCCCCCCCCCCC
Confidence 56666677777776653
No 481
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=40.54 E-value=7.2e+02 Score=29.81 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK----ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~----~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 278 (497)
|+....+..+.++.|+...+++-+.++.++.|-+++- +.+.++.+....|..+...+.-|......++...+-.|+
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe 518 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLE 518 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 5666667777777787777777777777766666553 336667777777777777777777777788888888888
Q ss_pred HHhhccc
Q 010914 279 LLKRTNV 285 (497)
Q Consensus 279 kL~ktNV 285 (497)
.-.+-|.
T Consensus 519 ~sekEN~ 525 (861)
T PF15254_consen 519 ASEKENQ 525 (861)
T ss_pred HHHhhhh
Confidence 8887774
No 482
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.53 E-value=55 Score=29.73 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=11.6
Q ss_pred cCCCceeeeecCCeee
Q 010914 285 VLNDAFPIWHDGEFGT 300 (497)
Q Consensus 285 V~Nd~F~I~hdG~fGT 300 (497)
+|++-|||.+ -+||.
T Consensus 82 lY~EGFHICn-~hyG~ 96 (114)
T COG4467 82 LYQEGFHICN-VHYGS 96 (114)
T ss_pred HHhccchhHH-HHhcc
Confidence 5999999977 56653
No 483
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=40.50 E-value=3.1e+02 Score=25.50 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
+.+.+..++.|+++++-+.+.+..+.
T Consensus 25 l~~~i~~~d~el~QLefq~kr~~~e~ 50 (131)
T PF11068_consen 25 LQEQIQQLDQELQQLEFQGKRMIKEI 50 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443
No 484
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=40.39 E-value=4.2e+02 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
+.....+|+.++..+..|+..-..-+..|+
T Consensus 256 t~~ak~~Le~ql~~~~~ei~~~e~~i~~L~ 285 (384)
T PF03148_consen 256 TQEAKNELEWQLKKTLQEIAEMEKNIEDLE 285 (384)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444555555555555544444444443
No 485
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=40.19 E-value=1.9e+02 Score=23.45 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 271 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 271 (497)
..-...|.+++...++.+.-|..++.|...+.. .+.+.++-.+..+..+++.++.++.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>PRK12765 flagellar capping protein; Provisional
Probab=40.11 E-value=1.4e+02 Score=34.20 Aligned_cols=64 Identities=6% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 276 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 276 (497)
|...++.+..+++.|+++++.+++ +++..|++|++.|+.+..-+..+......|..++..+.++
T Consensus 530 l~~~~~~l~~~~~~l~~~~~~~~~----------rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~~~~~ 593 (595)
T PRK12765 530 LTKYDESLTNEIKSLTTSKESTQE----------LIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINAANNS 593 (595)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
No 487
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=40.06 E-value=4.7e+02 Score=27.58 Aligned_cols=90 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 010914 193 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 272 (497)
Q Consensus 193 ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~ 272 (497)
+.-+...++.+..+-..+...|+.+-.+.++|.+.|+.-+.|+++..+.=+....-.-.|--+...++++++-+=..|-.
T Consensus 107 Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l 186 (338)
T KOG3647|consen 107 EKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFL 186 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhh
Q 010914 273 SQAHLELLKR 282 (497)
Q Consensus 273 ~~~qLdkL~k 282 (497)
--..|+-|++
T Consensus 187 ~f~nl~yL~~ 196 (338)
T KOG3647|consen 187 RFHNLDYLKS 196 (338)
T ss_pred HHhhHHHHHH
No 488
>PF14282 FlxA: FlxA-like protein
Probab=40.03 E-value=2.6e+02 Score=24.64 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 163 DKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 227 (497)
Q Consensus 163 d~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~E 227 (497)
+.+++.+.+.+.....-|+.|..... ++++.-......|..+...|..+|..++.+..+....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~--~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSD--LDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.98 E-value=3.3e+02 Score=29.14 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 010914 209 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI--------SSKIEVSQAHLELL 280 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl--------~~q~~~~~~qLdkL 280 (497)
+..+|.++|++|.+++++.-+....+.+++.+....-=.....-...+.++...+..+ .+.++..+.++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred h
Q 010914 281 K 281 (497)
Q Consensus 281 ~ 281 (497)
+
T Consensus 81 ~ 81 (330)
T PF07851_consen 81 R 81 (330)
T ss_pred H
No 490
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.64 E-value=4e+02 Score=26.61 Aligned_cols=118 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
+..+.++..+..|++....-|..++. +-.|+.+...+++..-..+...=+.|.+..++....+...+.....|.
T Consensus 65 ~~~~~~i~~~~~erdq~~~dL~s~E~------sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK 138 (207)
T PF05010_consen 65 ELSEAEIQKLLKERDQAYADLNSLEK------SFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK 138 (207)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010914 240 -ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 240 -~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 283 (497)
.-|+++=..-.....-...++.+...+.+++.-.+-++..|.++
T Consensus 139 ~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~ 183 (207)
T PF05010_consen 139 AHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEES 183 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=39.48 E-value=3e+02 Score=25.05 Aligned_cols=108 Identities=8% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
+..-++..+.+++.+...+..|..-+........+...--....=+..|..........+..++.+.+.....+.+...+
T Consensus 28 a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~ 107 (146)
T PRK07720 28 AVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010914 235 SKRFKELEERYWQEFNNFQFQLIAHQEE 262 (497)
Q Consensus 235 ~~~L~~eE~~~w~e~n~~q~ql~~~~ee 262 (497)
.+.++.+-++...++..-+.......-+
T Consensus 108 ~k~~ekLker~~~~~~~~e~r~EQk~~D 135 (146)
T PRK07720 108 VKKYEKMKEKKQEMFALEEKAAEMKEMD 135 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=39.40 E-value=4.5e+02 Score=27.15 Aligned_cols=92 Identities=5% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHH
Q 010914 191 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ----------FQLIAHQ 260 (497)
Q Consensus 191 ~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q----------~ql~~~~ 260 (497)
++..++..++.+++.+.....++++.++.....-..++..++.+....+..-+..-++|..++ .++.+.+
T Consensus 79 ld~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~ 158 (346)
T PRK10476 79 IDPRPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQAR 158 (346)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 010914 261 EERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 261 ee~~sl~~q~~~~~~qLdkL~k 282 (497)
.+.+..+++++.++.++..++.
T Consensus 159 ~~~~~a~~~l~~a~~~~~~~~~ 180 (346)
T PRK10476 159 TAQRDAEVSLNQALLQAQAAAA 180 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 493
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=39.17 E-value=4.5e+02 Score=30.11 Aligned_cols=88 Identities=25% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 010914 152 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQ-NAEVNAELKE 230 (497)
Q Consensus 152 ~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e-~~~l~~El~~ 230 (497)
++=...+++.+++++....++.+.-..--.+++. ..+.....|.++.+.+|+.-.++.++.+.+ .+.+..+-++
T Consensus 185 ~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~-----~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eek 259 (591)
T KOG2412|consen 185 LEEQNQVLQSLDTELQAIQREKQRKEQIRERKER-----SEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEK 259 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 010914 231 LELKSKRFKELEER 244 (497)
Q Consensus 231 le~e~~~L~~eE~~ 244 (497)
.++|.++.++.+..
T Consensus 260 qeee~ke~e~~~~k 273 (591)
T KOG2412|consen 260 QEEERKEAEEQAEK 273 (591)
T ss_pred HHHHHHHHHHHHHH
No 494
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=39.11 E-value=1.5e+02 Score=32.17 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQ----NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 256 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e----~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql 256 (497)
++..+++.|..|.+.+-+++.++.+. .+++.++.+++.+++.+++++.+....+++..-..+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 495
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=39.08 E-value=3.7e+02 Score=26.12 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 273 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 273 (497)
+.+.+....++.|-..-..+|..+|+...+-+. .|+.+...|+..|...=.....+..+...+.+....+.......
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~---~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~ 136 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKRLQQREE---QLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQ 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcc
Q 010914 274 QAHLELLKRTN 284 (497)
Q Consensus 274 ~~qLdkL~ktN 284 (497)
...|++.....
T Consensus 137 ~~~Le~iAglT 147 (201)
T PF12072_consen 137 QQELEEIAGLT 147 (201)
T ss_pred HHHHHHHhCCC
No 496
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.07 E-value=1.8e+02 Score=31.41 Aligned_cols=79 Identities=10% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHH-HHH-HHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE--LELKSKRFKELEERYWQEFNNF-QFQLIAHQE-ERD-AISSKIE 271 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~--le~e~~~L~~eE~~~w~e~n~~-q~ql~~~~e-e~~-sl~~q~~ 271 (497)
..|.-.|.+|-.+|.+|.++|..+.++|+++... +.+..+..+..=+..-+..|.+ +.-+.+..+ +++ ++.++++
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vlfq~d~~~ld~~lLARve 110 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRELVLFQRDDLKLDSVLLARVE 110 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHH
Q ss_pred HHHH
Q 010914 272 VSQA 275 (497)
Q Consensus 272 ~~~~ 275 (497)
-...
T Consensus 111 ~LlR 114 (420)
T PF07407_consen 111 TLLR 114 (420)
T ss_pred HHHH
No 497
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.02 E-value=2.3e+02 Score=23.62 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 265 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~s 265 (497)
++.+.+..=.+....|..|-+.|.+........|+.|..+...++..=..+=...+....++..+++....
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 498
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.96 E-value=2.5e+02 Score=23.98 Aligned_cols=68 Identities=13% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
|++.++.+++.+.+|...|.. -+ +++...+..--.|-......+-+||.....+.+ ..|.|+.+
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~-~~------------~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~---~YEeEI~r 68 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKH-QK------------DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ---QYEEEIAR 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHH
Q 010914 238 FKEL 241 (497)
Q Consensus 238 L~~e 241 (497)
|..+
T Consensus 69 Lr~e 72 (79)
T PF08581_consen 69 LRRE 72 (79)
T ss_dssp HHHH
T ss_pred HHHH
No 499
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.52 E-value=7.3e+02 Score=29.30 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 152 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 230 (497)
Q Consensus 152 ~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~-~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 230 (497)
..|.-.|...+...+.++..-|..|..-+.++..+... ......+.-++..++++-++-.+.+...-++..+..+++.+
T Consensus 139 ~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e 218 (716)
T KOG4593|consen 139 LKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEE 218 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 010914 231 LELKSKRFKELEE--RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 287 (497)
Q Consensus 231 le~e~~~L~~eE~--~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~N 287 (497)
+........+.|. .--.+..........--.+..-++..+..-...+.+|+..++.+
T Consensus 219 ~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv 277 (716)
T KOG4593|consen 219 RADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETV 277 (716)
T ss_pred HHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
No 500
>PHA03161 hypothetical protein; Provisional
Probab=38.52 E-value=1.1e+02 Score=29.20 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 010914 211 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 290 (497)
Q Consensus 211 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F 290 (497)
.+...+++.-...++.+|+..+.|..-|...-..-....-+++-...++.++.+--...+...+..
T Consensus 53 ~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ELe~l~~~q~~-------------- 118 (150)
T PHA03161 53 LKKQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEIEALNHGQPS-------------- 118 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--------------
Q ss_pred eeeecCCee-------eeccccCCCCCCCC
Q 010914 291 PIWHDGEFG-------TINNFRLGRLPKIP 313 (497)
Q Consensus 291 ~I~hdG~fG-------TINGlRLGrlp~~~ 313 (497)
.|+...| ||=..||+++|.+|
T Consensus 119 --~~~~~~~~~~~~~dtI~~WRLE~lPrcP 146 (150)
T PHA03161 119 --SQEEENSSENSIPDTIMQWRIEALPRVP 146 (150)
T ss_pred --cCCCCCCccCchhhHHHHHHHhhCCCCC
Done!