Query 010914
Match_columns 497
No_of_seqs 153 out of 247
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 16:55:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 100.0 2.1E-79 7.2E-84 587.7 16.3 192 258-458 2-206 (210)
2 3vp7_A Vacuolar protein sortin 100.0 4.9E-73 1.7E-77 546.5 14.6 175 283-458 1-217 (220)
3 3q8t_A Beclin-1; autophagy, AT 99.7 8E-17 2.7E-21 137.9 15.1 90 194-283 7-96 (96)
4 2p1l_B Beclin 1; apoptosis, au 98.3 1.3E-07 4.4E-12 65.4 1.5 27 123-149 5-31 (31)
5 1c1g_A Tropomyosin; contractIl 96.4 0.28 9.4E-06 44.8 18.4 18 163-180 5-22 (284)
6 2v71_A Nuclear distribution pr 96.3 0.56 1.9E-05 44.5 19.9 59 157-224 17-75 (189)
7 1c1g_A Tropomyosin; contractIl 96.0 0.71 2.4E-05 42.1 19.1 12 165-176 28-39 (284)
8 2efr_A General control protein 95.7 1.3 4.5E-05 40.7 19.6 82 201-282 73-154 (155)
9 3oja_B Anopheles plasmodium-re 95.6 0.13 4.5E-06 54.4 14.1 29 201-229 512-540 (597)
10 3q8t_A Beclin-1; autophagy, AT 95.6 0.53 1.8E-05 39.9 15.0 80 173-258 6-85 (96)
11 3oja_B Anopheles plasmodium-re 95.2 0.28 9.7E-06 51.8 14.8 55 228-282 511-565 (597)
12 3na7_A HP0958; flagellar bioge 95.1 1.2 4.1E-05 43.2 17.9 11 347-357 222-232 (256)
13 3na7_A HP0958; flagellar bioge 95.1 1.6 5.4E-05 42.3 18.7 37 196-232 95-131 (256)
14 2dfs_A Myosin-5A; myosin-V, in 95.0 0.15 5.3E-06 59.2 13.0 29 210-238 982-1010(1080)
15 3vkg_A Dynein heavy chain, cyt 94.2 0.87 3E-05 58.4 17.8 68 210-277 2012-2079(3245)
16 3o0z_A RHO-associated protein 94.2 3.6 0.00012 38.3 17.7 54 224-277 95-152 (168)
17 2v71_A Nuclear distribution pr 94.1 3.2 0.00011 39.3 17.4 74 209-282 46-126 (189)
18 3hnw_A Uncharacterized protein 94.1 0.67 2.3E-05 41.7 12.2 68 196-263 66-133 (138)
19 2efr_A General control protein 93.3 4.8 0.00017 37.0 17.5 32 247-278 98-129 (155)
20 3vkg_A Dynein heavy chain, cyt 91.9 3 0.0001 53.7 17.6 33 153-185 1899-1931(3245)
21 2v4h_A NF-kappa-B essential mo 90.4 4.9 0.00017 35.1 12.3 69 212-280 38-109 (110)
22 1l8d_A DNA double-strand break 89.6 7.8 0.00027 32.5 13.1 32 247-278 71-102 (112)
23 3bas_A Myosin heavy chain, str 89.5 7.3 0.00025 32.3 12.4 69 198-280 14-82 (89)
24 3oja_A Leucine-rich immune mol 89.2 7 0.00024 40.4 15.0 34 223-256 432-465 (487)
25 3s4r_A Vimentin; alpha-helix, 89.1 9.1 0.00031 32.1 13.1 69 212-282 23-91 (93)
26 3oja_A Leucine-rich immune mol 88.1 10 0.00034 39.2 15.3 22 162-183 358-379 (487)
27 3a7p_A Autophagy protein 16; c 88.0 3.4 0.00012 37.9 10.2 23 213-235 69-91 (152)
28 1ic2_A Tropomyosin alpha chain 87.8 9.7 0.00033 30.8 12.7 36 247-282 41-76 (81)
29 3a7p_A Autophagy protein 16; c 87.5 9.6 0.00033 34.9 12.8 64 198-268 68-131 (152)
30 3hnw_A Uncharacterized protein 87.1 7.4 0.00025 34.9 11.8 40 203-242 66-105 (138)
31 3bas_A Myosin heavy chain, str 86.3 13 0.00044 30.7 12.3 36 199-234 22-57 (89)
32 1deq_A Fibrinogen (alpha chain 85.9 20 0.00067 37.4 15.5 41 270-317 181-222 (390)
33 2jee_A YIIU; FTSZ, septum, coi 84.2 17 0.00057 30.1 11.6 27 213-239 28-54 (81)
34 3u1c_A Tropomyosin alpha-1 cha 83.4 19 0.00067 30.3 14.6 25 159-183 4-28 (101)
35 2zqm_A Prefoldin beta subunit 83.0 7.9 0.00027 32.5 9.6 40 198-237 70-109 (117)
36 3u59_A Tropomyosin beta chain; 82.9 20 0.00069 30.1 14.6 19 160-178 5-23 (101)
37 3iox_A AGI/II, PA; alpha helix 81.8 19 0.00067 38.5 13.9 95 170-269 8-102 (497)
38 3mq9_A Bone marrow stromal ant 81.7 11 0.00039 38.6 12.1 26 212-237 443-468 (471)
39 1l8d_A DNA double-strand break 80.9 22 0.00075 29.7 11.6 35 201-235 67-101 (112)
40 3nmd_A CGMP dependent protein 80.9 5.1 0.00018 32.5 7.1 44 195-238 23-66 (72)
41 2jee_A YIIU; FTSZ, septum, coi 80.4 21 0.00073 29.5 10.8 19 208-226 37-55 (81)
42 1ic2_A Tropomyosin alpha chain 80.3 17 0.00057 29.4 10.2 20 162-181 4-23 (81)
43 3ghg_A Fibrinogen alpha chain; 80.2 37 0.0012 36.8 15.3 19 269-287 177-195 (562)
44 3s9g_A Protein hexim1; cyclin 80.1 28 0.00095 29.9 11.7 62 175-241 18-80 (104)
45 3ghg_A Fibrinogen alpha chain; 79.6 18 0.00062 39.1 12.8 65 247-339 131-195 (562)
46 2v66_B Nuclear distribution pr 79.1 32 0.0011 30.0 14.9 85 160-249 6-90 (111)
47 2ocy_A RAB guanine nucleotide 77.9 42 0.0014 30.7 16.1 31 252-282 113-143 (154)
48 3swk_A Vimentin; cytoskeleton, 77.7 28 0.00096 28.6 12.7 36 248-283 50-85 (86)
49 1ci6_A Transcription factor AT 77.0 8.3 0.00028 30.0 7.1 39 202-240 20-58 (63)
50 1fxk_A Prefoldin; archaeal pro 76.3 12 0.00041 30.9 8.4 37 199-235 66-102 (107)
51 3iv1_A Tumor susceptibility ge 76.0 24 0.00083 28.9 9.8 32 208-239 42-73 (78)
52 3ajw_A Flagellar FLIJ protein; 75.5 39 0.0013 29.1 13.2 96 159-254 21-130 (150)
53 2w83_C C-JUN-amino-terminal ki 75.4 23 0.00078 29.0 9.4 43 194-236 33-75 (77)
54 3uux_B Mitochondrial division 75.2 27 0.00093 34.2 11.6 73 202-274 153-225 (242)
55 2ve7_A Kinetochore protein HEC 75.2 8.9 0.00031 38.5 8.7 58 174-238 153-211 (315)
56 3mq9_A Bone marrow stromal ant 75.0 78 0.0027 32.3 16.7 30 253-282 442-471 (471)
57 3tnu_B Keratin, type II cytosk 74.8 42 0.0014 29.2 12.1 34 199-232 37-70 (129)
58 3opc_A Uncharacterized protein 73.7 46 0.0016 29.2 12.6 110 167-282 11-131 (154)
59 3tnu_A Keratin, type I cytoske 73.2 38 0.0013 29.6 11.2 29 203-231 43-71 (131)
60 3ol1_A Vimentin; structural ge 72.8 46 0.0016 28.8 16.1 30 155-184 18-47 (119)
61 2p22_A Suppressor protein STP2 72.0 46 0.0016 31.0 11.9 79 196-274 47-135 (174)
62 1wt6_A Myotonin-protein kinase 72.0 15 0.00051 30.4 7.6 42 197-238 30-71 (81)
63 2i1j_A Moesin; FERM, coiled-co 71.5 1.7 5.7E-05 47.2 2.4 16 169-184 333-348 (575)
64 3u1c_A Tropomyosin alpha-1 cha 70.2 48 0.0016 27.9 15.0 49 210-258 28-76 (101)
65 1m1j_C Fibrinogen gamma chain; 69.9 61 0.0021 33.8 13.7 24 160-183 44-67 (409)
66 3cvf_A Homer-3, homer protein 69.7 37 0.0013 27.9 9.5 33 203-235 18-50 (79)
67 2b5u_A Colicin E3; high resolu 69.2 60 0.0021 35.0 13.4 27 213-239 315-341 (551)
68 3o0z_A RHO-associated protein 68.9 74 0.0025 29.5 18.5 67 161-233 10-76 (168)
69 1hjb_A Ccaat/enhancer binding 68.6 23 0.0008 29.5 8.3 39 202-240 33-71 (87)
70 2v66_B Nuclear distribution pr 67.7 61 0.0021 28.1 12.7 70 154-236 32-101 (111)
71 2lw1_A ABC transporter ATP-bin 67.5 34 0.0012 27.9 9.1 21 199-219 23-43 (89)
72 3cvf_A Homer-3, homer protein 67.5 47 0.0016 27.3 9.7 37 203-239 4-40 (79)
73 1f5n_A Interferon-induced guan 67.3 1.5E+02 0.005 32.3 18.1 17 267-283 566-582 (592)
74 3u59_A Tropomyosin beta chain; 67.2 55 0.0019 27.3 15.0 50 210-259 28-77 (101)
75 2oto_A M protein; helical coil 66.8 71 0.0024 28.5 14.4 58 161-224 26-83 (155)
76 3viq_B Mating-type switching p 66.3 17 0.00059 30.3 6.9 44 210-253 6-54 (85)
77 2avr_X Adhesion A; antiparalle 66.1 33 0.0011 30.3 9.1 17 262-278 72-88 (119)
78 2v4h_A NF-kappa-B essential mo 65.9 67 0.0023 27.9 12.7 32 208-239 27-58 (110)
79 2i1j_A Moesin; FERM, coiled-co 65.6 5 0.00017 43.5 4.6 39 203-241 389-427 (575)
80 3mq7_A Bone marrow stromal ant 64.3 76 0.0026 28.0 13.2 25 213-237 72-96 (121)
81 4dk0_A Putative MACA; alpha-ha 64.3 35 0.0012 33.5 10.1 30 253-282 121-150 (369)
82 1t2k_D Cyclic-AMP-dependent tr 64.3 20 0.00067 27.4 6.6 35 205-239 22-56 (61)
83 3fpp_A Macrolide-specific effl 63.7 28 0.00097 33.8 9.3 28 254-281 121-148 (341)
84 3mq7_A Bone marrow stromal ant 63.0 80 0.0027 27.8 13.5 26 209-234 75-100 (121)
85 4etp_A Kinesin-like protein KA 62.8 21 0.00071 37.0 8.5 24 212-235 10-33 (403)
86 3ibp_A Chromosome partition pr 62.3 68 0.0023 32.4 11.6 74 158-231 25-102 (302)
87 3ol1_A Vimentin; structural ge 62.1 77 0.0026 27.3 14.7 11 175-185 17-27 (119)
88 3cve_A Homer protein homolog 1 62.0 61 0.0021 26.1 11.1 38 201-238 10-47 (72)
89 1wle_A Seryl-tRNA synthetase; 61.5 45 0.0015 35.6 11.0 37 198-234 70-106 (501)
90 2fup_A Hypothetical protein PA 61.4 35 0.0012 29.7 8.6 114 168-284 11-134 (157)
91 3ljm_A Coil Ser L9C; de novo d 61.4 11 0.00038 25.3 3.9 26 214-239 3-28 (31)
92 3hhm_B NISH2 P85alpha; PI3KCA, 59.9 79 0.0027 32.5 12.1 60 199-265 199-258 (373)
93 3u06_A Protein claret segregat 59.5 23 0.00079 36.8 8.2 31 202-232 7-37 (412)
94 3jsv_C NF-kappa-B essential mo 59.3 68 0.0023 27.2 9.4 24 258-281 65-88 (94)
95 2pms_C Pneumococcal surface pr 58.4 63 0.0022 28.7 9.5 112 161-280 10-122 (125)
96 2wt7_A Proto-oncogene protein 58.3 29 0.00098 26.8 6.6 34 206-239 24-57 (63)
97 1ik9_A DNA repair protein XRCC 58.1 74 0.0025 30.3 10.8 7 151-157 130-136 (213)
98 1gu4_A CAAT/enhancer binding p 58.0 34 0.0012 27.9 7.2 39 201-239 32-70 (78)
99 2dq0_A Seryl-tRNA synthetase; 57.8 41 0.0014 35.4 9.8 91 195-294 28-118 (455)
100 1go4_E MAD1 (mitotic arrest de 56.6 47 0.0016 28.4 8.1 36 146-185 5-40 (100)
101 1fxk_C Protein (prefoldin); ar 56.6 90 0.0031 26.7 10.3 82 157-238 15-128 (133)
102 3lss_A Seryl-tRNA synthetase; 56.5 71 0.0024 34.0 11.4 37 197-233 36-72 (484)
103 2l5g_B Putative uncharacterize 54.3 24 0.00081 25.9 5.0 29 210-238 7-35 (42)
104 3etw_A Adhesin A; antiparallel 54.2 70 0.0024 28.1 9.1 14 265-278 75-88 (119)
105 4e61_A Protein BIM1; EB1-like 54.2 1.1E+02 0.0037 26.5 11.1 45 210-254 9-53 (106)
106 4etp_A Kinesin-like protein KA 53.8 34 0.0012 35.4 8.3 32 203-234 8-39 (403)
107 2wt7_B Transcription factor MA 53.6 29 0.00098 29.2 6.2 11 260-270 75-85 (90)
108 3qne_A Seryl-tRNA synthetase, 53.4 49 0.0017 35.3 9.5 88 197-295 32-121 (485)
109 4dzn_A Coiled-coil peptide CC- 53.2 28 0.00095 23.6 4.8 23 216-238 6-28 (33)
110 3nmd_A CGMP dependent protein 53.0 53 0.0018 26.6 7.4 8 274-281 60-67 (72)
111 2e7s_A RAB guanine nucleotide 52.8 72 0.0025 28.7 9.1 12 270-281 119-130 (135)
112 2oto_A M protein; helical coil 52.7 1.3E+02 0.0043 26.8 18.7 22 162-183 34-55 (155)
113 3iox_A AGI/II, PA; alpha helix 52.4 2E+02 0.007 30.8 13.9 28 157-184 9-40 (497)
114 1go4_E MAD1 (mitotic arrest de 50.6 27 0.00093 29.9 5.7 32 206-237 13-44 (100)
115 3ra3_B P2F; coiled coil domain 49.9 13 0.00046 24.4 2.8 24 216-239 4-27 (28)
116 1ykh_B RNA polymerase II holoe 49.7 1.4E+02 0.0046 26.3 10.5 70 148-224 49-118 (132)
117 1jnm_A Proto-oncogene C-JUN; B 49.0 21 0.00072 27.4 4.4 34 205-238 22-55 (62)
118 2yy0_A C-MYC-binding protein; 48.7 29 0.00099 26.3 5.0 28 201-228 22-49 (53)
119 1yke_B RNA polymerase II holoe 48.6 1.2E+02 0.0041 27.4 10.0 31 192-222 86-116 (151)
120 3i00_A HIP-I, huntingtin-inter 48.5 1.4E+02 0.0047 26.1 11.6 20 156-175 14-33 (120)
121 2aze_B Transcription factor E2 48.4 33 0.0011 29.3 6.0 33 208-240 9-41 (106)
122 3qh9_A Liprin-beta-2; coiled-c 48.0 1.2E+02 0.004 25.1 10.8 38 202-239 23-60 (81)
123 1f5n_A Interferon-induced guan 47.8 3E+02 0.01 29.8 19.3 18 259-276 565-582 (592)
124 3tnu_B Keratin, type II cytosk 47.6 1.4E+02 0.0047 25.8 13.0 27 205-231 36-62 (129)
125 3ghg_C Fibrinogen gamma chain; 47.6 2E+02 0.0067 30.2 12.7 25 159-183 40-67 (411)
126 3a2a_A Voltage-gated hydrogen 47.4 51 0.0017 25.5 6.1 35 199-233 12-46 (58)
127 1ci6_A Transcription factor AT 47.4 54 0.0018 25.3 6.5 30 196-225 28-57 (63)
128 2eqb_B RAB guanine nucleotide 47.2 1.3E+02 0.0045 25.5 11.5 13 219-231 47-59 (97)
129 3qne_A Seryl-tRNA synthetase, 46.4 96 0.0033 33.1 10.4 27 379-417 310-336 (485)
130 3fpp_A Macrolide-specific effl 45.8 90 0.0031 30.2 9.5 24 254-277 128-151 (341)
131 1lwu_C Fibrinogen gamma chain; 44.8 62 0.0021 32.8 8.3 12 315-326 129-140 (323)
132 2dq0_A Seryl-tRNA synthetase; 44.8 1.1E+02 0.0039 32.0 10.6 28 379-418 314-341 (455)
133 3iv1_A Tumor susceptibility ge 44.7 1.3E+02 0.0044 24.6 10.1 65 156-226 10-74 (78)
134 1ses_A Seryl-tRNA synthetase; 44.3 1.2E+02 0.0041 31.4 10.6 27 379-417 289-315 (421)
135 3u06_A Protein claret segregat 44.1 57 0.0019 33.9 8.1 34 206-239 4-37 (412)
136 1uix_A RHO-associated kinase; 42.9 1.3E+02 0.0045 24.2 10.6 46 211-256 3-48 (71)
137 2k48_A Nucleoprotein; viral pr 42.6 1.6E+02 0.0056 25.4 9.3 13 265-277 86-98 (107)
138 1ses_A Seryl-tRNA synthetase; 42.5 60 0.0021 33.7 8.0 34 197-230 27-60 (421)
139 1x79_B RAB GTPase binding effe 42.1 1.7E+02 0.0059 25.4 12.0 33 237-269 60-92 (112)
140 4dk0_A Putative MACA; alpha-ha 42.1 1E+02 0.0035 30.1 9.3 51 249-308 124-174 (369)
141 3haj_A Human pacsin2 F-BAR; pa 41.9 3.2E+02 0.011 28.4 14.7 32 242-273 205-236 (486)
142 2lw1_A ABC transporter ATP-bin 41.9 1E+02 0.0035 25.0 7.8 19 165-183 23-41 (89)
143 1hjb_A Ccaat/enhancer binding 41.2 50 0.0017 27.5 5.8 36 195-230 40-75 (87)
144 2xnx_M M protein, M1-BC1; cell 40.7 2E+02 0.0069 26.1 10.1 17 273-289 99-115 (146)
145 1a93_B MAX protein, coiled coi 40.3 41 0.0014 23.6 4.2 25 208-232 10-34 (34)
146 1deq_A Fibrinogen (alpha chain 38.9 3E+02 0.01 28.6 12.3 17 325-341 184-200 (390)
147 2v0o_A FCHO2, FCH domain only 38.9 2.4E+02 0.0083 26.2 18.2 24 161-184 130-153 (276)
148 1m1j_B Fibrinogen beta chain; 38.7 3.8E+02 0.013 28.4 17.6 27 159-185 88-114 (464)
149 1nlw_A MAD protein, MAX dimeri 38.6 38 0.0013 27.4 4.6 30 200-229 49-78 (80)
150 4h22_A Leucine-rich repeat fli 38.2 1.9E+02 0.0066 24.8 10.8 19 210-228 35-53 (103)
151 3vmx_A Voltage-gated hydrogen 38.1 1.3E+02 0.0043 22.6 7.1 35 199-233 5-39 (48)
152 2wt7_A Proto-oncogene protein 38.1 86 0.0029 24.0 6.4 24 201-224 33-56 (63)
153 3haj_A Human pacsin2 F-BAR; pa 38.1 3.6E+02 0.012 27.9 13.9 21 301-322 287-307 (486)
154 1t2k_D Cyclic-AMP-dependent tr 38.1 76 0.0026 24.1 6.0 23 202-224 33-55 (61)
155 3efg_A Protein SLYX homolog; x 37.8 1.3E+02 0.0043 24.4 7.6 40 195-234 11-50 (78)
156 3cve_A Homer protein homolog 1 37.7 1.6E+02 0.0055 23.7 11.1 30 210-239 5-34 (72)
157 2fic_A Bridging integrator 1; 37.6 2.5E+02 0.0087 26.0 13.4 29 231-259 202-231 (251)
158 1wle_A Seryl-tRNA synthetase; 37.5 1E+02 0.0034 33.0 8.9 27 379-417 345-371 (501)
159 1g6u_A Domain swapped dimer; d 37.5 1.2E+02 0.004 22.1 6.8 18 210-227 25-42 (48)
160 1m1j_A Fibrinogen alpha subuni 37.3 4.1E+02 0.014 28.4 18.4 19 270-288 179-197 (491)
161 2yy0_A C-MYC-binding protein; 37.2 56 0.0019 24.7 5.0 22 198-219 26-47 (53)
162 1nkp_A C-MYC, MYC proto-oncoge 37.0 46 0.0016 27.3 4.9 32 200-231 54-85 (88)
163 1nkp_B MAX protein, MYC proto- 36.2 38 0.0013 27.1 4.2 30 201-230 50-79 (83)
164 1s1c_X RHO-associated, coiled- 35.9 1.7E+02 0.0058 23.5 9.9 35 209-243 3-37 (71)
165 2f1m_A Acriflavine resistance 35.8 1.1E+02 0.0037 28.8 8.0 20 259-278 110-129 (277)
166 3etv_A Protein transport prote 35.6 1.1E+02 0.0038 31.5 8.4 57 161-217 13-71 (355)
167 3i00_A HIP-I, huntingtin-inter 35.5 2.2E+02 0.0076 24.8 11.8 15 203-217 20-34 (120)
168 4dzn_A Coiled-coil peptide CC- 33.9 85 0.0029 21.3 4.8 23 210-232 7-29 (33)
169 2b9c_A Striated-muscle alpha t 33.9 2.6E+02 0.0089 25.0 14.3 23 162-184 22-44 (147)
170 3m9b_A Proteasome-associated A 33.5 48 0.0016 32.7 5.2 24 212-235 61-84 (251)
171 1m1j_B Fibrinogen beta chain; 33.5 4.6E+02 0.016 27.8 15.2 7 345-351 230-236 (464)
172 1gmj_A ATPase inhibitor; coile 33.1 1.3E+02 0.0043 25.0 6.9 27 205-231 51-77 (84)
173 1t6f_A Geminin; coiled-coil, c 33.1 76 0.0026 22.5 4.7 25 214-238 9-33 (37)
174 3gp4_A Transcriptional regulat 32.8 2.5E+02 0.0085 24.5 10.6 18 208-225 91-108 (142)
175 4emc_A Monopolin complex subun 32.8 3.2E+02 0.011 25.8 10.6 36 201-236 23-58 (190)
176 1ik9_A DNA repair protein XRCC 32.6 3.3E+02 0.011 25.8 12.0 51 210-260 144-195 (213)
177 3ter_A Mammalian stromal inter 32.6 2.4E+02 0.0082 25.3 9.1 43 253-295 44-87 (136)
178 4emc_A Monopolin complex subun 32.3 2.9E+02 0.0098 26.1 10.0 24 276-299 80-107 (190)
179 3bua_E HSNM1B, DNA cross-LINK 32.1 21 0.0007 25.1 1.6 18 438-455 5-22 (36)
180 1joc_A EEA1, early endosomal a 31.7 2.5E+02 0.0085 24.2 9.6 13 213-225 19-31 (125)
181 3tkl_B LIDA protein, substrate 31.6 92 0.0031 30.2 6.6 46 158-203 43-90 (267)
182 2zdi_C Prefoldin subunit alpha 31.1 2.1E+02 0.0072 25.1 8.7 42 197-238 97-138 (151)
183 2dq3_A Seryl-tRNA synthetase; 31.0 45 0.0015 34.7 4.8 92 195-295 27-118 (425)
184 1j1d_C Troponin I, TNI; THIN f 31.0 2.9E+02 0.0098 24.6 11.6 20 159-178 28-47 (133)
185 1fmh_A General control protein 30.3 80 0.0027 21.4 4.2 8 217-224 6-13 (33)
186 3rrk_A V-type ATPase 116 kDa s 30.2 1.8E+02 0.006 28.7 8.9 48 201-250 95-143 (357)
187 4b4t_K 26S protease regulatory 30.1 70 0.0024 33.3 6.1 7 313-319 168-174 (428)
188 3lss_A Seryl-tRNA synthetase; 29.7 2.2E+02 0.0077 30.2 10.0 25 381-417 335-359 (484)
189 2l5g_B Putative uncharacterize 29.7 1.2E+02 0.004 22.2 5.3 26 194-219 5-30 (42)
190 2wt7_B Transcription factor MA 28.9 2.5E+02 0.0087 23.4 9.4 25 214-238 50-74 (90)
191 1m1j_C Fibrinogen gamma chain; 28.7 5.1E+02 0.018 26.9 14.3 29 254-282 105-133 (409)
192 4dyl_A Tyrosine-protein kinase 28.7 4.7E+02 0.016 26.4 13.4 132 150-282 91-226 (406)
193 1zxa_A CGMP-dependent protein 28.7 97 0.0033 24.7 5.3 28 211-238 24-51 (67)
194 2gd5_A Charged multivesicular 28.4 3.3E+02 0.011 24.6 11.3 39 194-232 10-48 (179)
195 2dgc_A Protein (GCN4); basic d 27.3 81 0.0028 24.4 4.6 26 208-233 33-58 (63)
196 2ke4_A CDC42-interacting prote 27.2 2.8E+02 0.0095 23.3 9.6 32 154-185 19-50 (98)
197 2qyw_A Vesicle transport throu 27.0 2.7E+02 0.0094 23.1 10.3 18 157-174 15-32 (102)
198 3tq7_B Microtubule-associated 27.0 71 0.0024 26.3 4.4 26 159-184 10-35 (82)
199 1x79_B RAB GTPase binding effe 26.9 3.1E+02 0.011 23.8 11.9 22 160-181 16-37 (112)
200 3tnf_B LIDA, RAS-related prote 26.5 1.6E+02 0.0054 29.8 7.5 49 155-203 23-73 (384)
201 3bbp_D GRIP and coiled-coil do 26.3 42 0.0014 27.0 2.8 48 195-242 19-66 (71)
202 4dci_A Uncharacterized protein 26.3 3.7E+02 0.013 24.4 11.1 24 211-234 35-58 (150)
203 2ykt_A Brain-specific angiogen 26.3 4.5E+02 0.015 25.4 14.9 111 160-284 39-151 (253)
204 3onj_A T-snare VTI1; helix, HA 26.2 2.7E+02 0.0094 22.9 10.7 26 213-238 35-60 (97)
205 2xdj_A Uncharacterized protein 25.5 2.8E+02 0.0095 22.7 9.6 41 208-248 23-63 (83)
206 4e61_A Protein BIM1; EB1-like 25.4 75 0.0026 27.5 4.4 26 159-184 27-52 (106)
207 1jnm_A Proto-oncogene C-JUN; B 25.2 66 0.0023 24.5 3.7 20 203-222 34-53 (62)
208 2aze_B Transcription factor E2 25.0 1.2E+02 0.0042 25.8 5.7 21 280-300 56-76 (106)
209 2xnx_M M protein, M1-BC1; cell 24.7 3.5E+02 0.012 24.5 8.8 20 200-219 35-54 (146)
210 2eqb_B RAB guanine nucleotide 24.6 3.2E+02 0.011 23.1 14.6 23 161-183 9-31 (97)
211 2dq3_A Seryl-tRNA synthetase; 24.6 93 0.0032 32.2 5.9 26 379-416 293-318 (425)
212 1lwu_C Fibrinogen gamma chain; 24.3 1.4E+02 0.0047 30.3 6.8 9 344-352 89-97 (323)
213 3m9b_A Proteasome-associated A 24.2 1E+02 0.0035 30.3 5.7 7 304-310 122-128 (251)
214 1zhc_A Hypothetical protein HP 24.2 1.9E+02 0.0063 23.1 6.3 37 202-239 21-57 (76)
215 3etw_A Adhesin A; antiparallel 24.2 3.6E+02 0.012 23.6 14.0 10 276-285 103-112 (119)
216 4h22_A Leucine-rich repeat fli 24.1 3.4E+02 0.012 23.3 10.8 27 206-232 24-50 (103)
217 1fzc_C Fibrin; blood coagulati 23.7 46 0.0016 33.7 3.2 12 315-326 120-131 (319)
218 3m91_A Proteasome-associated A 23.6 2.4E+02 0.008 21.2 6.5 38 194-231 12-49 (51)
219 3ra3_A P1C; coiled coil domain 23.5 40 0.0014 22.1 1.7 19 217-235 5-23 (28)
220 1xaw_A Occludin; coiled-coil, 23.4 4.1E+02 0.014 23.9 10.7 23 209-231 63-85 (140)
221 1t3j_A Mitofusin 1; coiled coi 23.4 3.4E+02 0.012 23.0 8.9 13 226-238 54-66 (96)
222 4fi5_A Nucleoprotein; structur 23.2 3.7E+02 0.013 23.4 8.7 30 191-220 22-51 (113)
223 3oa7_A Head morphogenesis prot 23.1 5E+02 0.017 24.8 9.9 62 175-239 10-71 (206)
224 1zhc_A Hypothetical protein HP 22.8 1.6E+02 0.0053 23.5 5.6 51 213-271 18-68 (76)
225 2p22_A Suppressor protein STP2 22.7 3.6E+02 0.012 25.0 8.8 39 244-282 53-91 (174)
226 3gp4_A Transcriptional regulat 22.4 3.3E+02 0.011 23.7 8.2 16 218-233 87-102 (142)
227 1gu4_A CAAT/enhancer binding p 22.4 1.6E+02 0.0056 23.8 5.7 30 196-225 41-70 (78)
228 2avr_X Adhesion A; antiparalle 21.4 4.1E+02 0.014 23.3 12.8 8 277-284 104-111 (119)
229 2p22_C Protein SRN2; endosome, 21.4 5E+02 0.017 24.2 11.3 20 226-245 90-109 (192)
230 4ad8_A DNA repair protein RECN 21.2 6.9E+02 0.024 25.7 16.0 124 159-282 195-337 (517)
231 1nkp_B MAX protein, MYC proto- 21.0 96 0.0033 24.7 4.1 25 210-234 52-76 (83)
232 1lrz_A FEMA, factor essential 21.0 2.5E+02 0.0087 28.4 8.2 38 259-296 286-323 (426)
233 4etp_B Spindle POLE BODY-assoc 20.8 2.5E+02 0.0085 28.7 7.8 54 214-274 5-58 (333)
234 1j1e_C Troponin I, TNI; THIN f 20.6 5.2E+02 0.018 24.1 11.4 20 159-178 28-47 (180)
235 3plt_A Sphingolipid long chain 20.6 5.9E+02 0.02 24.7 15.6 79 158-239 74-158 (234)
236 3he5_B Synzip2; heterodimeric 20.6 2.6E+02 0.0089 20.6 6.9 7 204-210 23-29 (52)
237 1x8y_A Lamin A/C; structural p 20.5 3.1E+02 0.011 22.2 7.1 60 213-275 4-63 (86)
238 1g6u_A Domain swapped dimer; d 20.2 2.5E+02 0.0087 20.3 6.7 19 214-232 22-40 (48)
239 2gd5_A Charged multivesicular 20.1 4.8E+02 0.016 23.5 13.4 25 195-219 25-49 (179)
240 3ghg_C Fibrinogen gamma chain; 20.0 7.6E+02 0.026 25.7 15.3 29 158-186 25-53 (411)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=100.00 E-value=2.1e-79 Score=587.72 Aligned_cols=192 Identities=44% Similarity=0.900 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 010914 258 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 337 (497)
Q Consensus 258 ~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 337 (497)
++++|++|+++||+++++|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus 2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l 81 (210)
T 4ddp_A 2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM 81 (210)
T ss_dssp ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeecCCCceeeecCC--ceeecccCC--CCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 010914 338 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELFGPV--NLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKL 413 (497)
Q Consensus 338 ~~kf~y~YkLvPmGS~SkI~~~~~--~~~eLyg~~--~lf~~~kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~L 413 (497)
+++|+ +|+|+||||+|+|++..+ .+|+||+++ ++|++++||+||+|||+||+||++++++.+ ++++|
T Consensus 82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~--------~~~~l 152 (210)
T 4ddp_A 82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGE--------TRFCL 152 (210)
T ss_dssp TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC---------CCCCC
T ss_pred CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCC--------CCCCC
Confidence 99999 999999999999998653 589999754 789999999999999999999999998754 47999
Q ss_pred ceee--eCCccc-------eeeEEecCCCCchhhHHHHHHHhhHHHHHHHHhhC
Q 010914 414 PYKI--ENDKVE-------NYSITQSFNKQENWTKALKYTLCNLKWALFWFVGN 458 (497)
Q Consensus 414 PY~I--~kdkIg-------g~SIkl~~n~~e~WTkAlK~lLtNlKWlLaw~~~~ 458 (497)
||+| ++|||+ |+|||+++|++|+||+||||||||+||+|||++..
T Consensus 153 PY~I~~~~dkI~D~~~~~~~~SIrl~~n~~e~WTkAlK~mLtnlKw~La~~s~~ 206 (210)
T 4ddp_A 153 PYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQ 206 (210)
T ss_dssp SSCEETTTTEEECTTTTCCEEESCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCEecCccCCCCceEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 799997 79999999999999999999999999999999863
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-73 Score=546.55 Aligned_cols=175 Identities=31% Similarity=0.559 Sum_probs=150.3
Q ss_pred cccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceeee----
Q 010914 283 TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD---- 358 (497)
Q Consensus 283 tNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~kf~y~YkLvPmGS~SkI~~---- 358 (497)
||||||+|||||||+|||||||||||+|++||+|+||||||||+||||++||++++++|+ +|+|+||||+|+|++
T Consensus 1 tNV~Nd~F~I~hdg~fgTINglRLGrl~~~~V~W~EINAAwGq~~LLL~tla~kl~~~f~-~Y~L~PmGS~S~I~~~~~~ 79 (220)
T 3vp7_A 1 INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLV-DYELQPMGSFSKIKKRMVN 79 (220)
T ss_dssp CCTTTTTCCEEEETTEEEETTEEECCBTTBCCCHHHHHHHHHHHHHHHHHHHHHTTCCCS-SEEEECCGGGCEEEEEC--
T ss_pred CccccceeEEeecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-cceEEeCCCcceEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred ---cC---------CceeecccCCC-----Ccc-ccchhHHHHHHHHHHHHHHHHHhccCC------------------C
Q 010914 359 ---SN---------NNTYELFGPVN-----LFW-STRYDKAMTLFLSCLKDFAEFANSKDQ------------------E 402 (497)
Q Consensus 359 ---~~---------~~~~eLyg~~~-----lf~-~~kFD~AM~afL~cl~q~~e~~~~~d~------------------~ 402 (497)
.+ ..+|+|||+++ +|+ ++|||+||+|||+||+||++|+++.++ .
T Consensus 80 ~~~~~~~~~~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (220)
T 3vp7_A 80 SVEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESSMNNA 159 (220)
T ss_dssp -------------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred cccccccccccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccc
Confidence 32 35799998864 575 469999999999999999999876432 0
Q ss_pred CCCCCCC-CCCCceeeeCCccceeeEEecC-CCCchhhHHHHHHHhhHHHHHHHHhhC
Q 010914 403 NNIPPDK-CFKLPYKIENDKVENYSITQSF-NKQENWTKALKYTLCNLKWALFWFVGN 458 (497)
Q Consensus 403 ~~~~~~~-~~~LPY~I~kdkIgg~SIkl~~-n~~e~WTkAlK~lLtNlKWlLaw~~~~ 458 (497)
+.+.++. +++|||+|++|||||+|||+++ |++|+|||||||||||+||+|||++..
T Consensus 160 ~~~~~~~~~l~LPY~I~~DkI~g~SIkl~~~~~~e~WTkAlK~~LtnlKwlLa~~S~~ 217 (220)
T 3vp7_A 160 NDVENSTSILELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNL 217 (220)
T ss_dssp ---------CCCSSCEETTEETTEESCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccCCeEeeCCcCCCEEEEeecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111222 4999999999999999999987 569999999999999999999999853
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=99.72 E-value=8e-17 Score=137.87 Aligned_cols=90 Identities=22% Similarity=0.429 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 273 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 273 (497)
+.+.+++..|+.+|.+|.++|++||++++.++.+|..++.+...|+.+|.+||++||.|++++.+|+++++|+++||.|+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 010914 274 QAHLELLKRT 283 (497)
Q Consensus 274 ~~qLdkL~kt 283 (497)
++||++|+|.
T Consensus 87 ~~qLdkL~K~ 96 (96)
T 3q8t_A 87 QMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhhcC
Confidence 9999999973
No 4
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.33 E-value=1.3e-07 Score=65.42 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=18.5
Q ss_pred CCcchhhHHHHHHHHHhhcCCCccCCc
Q 010914 123 NSGFHSTITVLKRAFEIATSQTQVEQP 149 (497)
Q Consensus 123 ~~~ls~~i~~l~~lFdIlSs~s~IDhP 149 (497)
..+||++++++++||||||++++||||
T Consensus 5 ~~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 5 MENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------
T ss_pred cccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 356999999999999999999999999
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.40 E-value=0.28 Score=44.84 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010914 163 DKEVDDVTRDIEAYEACL 180 (497)
Q Consensus 163 d~qle~~~~E~d~Y~~fL 180 (497)
++.+..+..+.+.+..-+
T Consensus 5 ~~~~~~l~~~~~~~~~~~ 22 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRA 22 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 333333333333333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.28 E-value=0.56 Score=44.49 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 157 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 224 (497)
Q Consensus 157 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 224 (497)
.+..+++.++++++.|-+.|+..=+.|+. ++.+++..+++....|...+..|..+.+..
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~---------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~ 75 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEA---------ELEAQLVQAEQRNRDLQADNQRLKYEVEAL 75 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888887777653 234444444444444444444444444443
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.04 E-value=0.71 Score=42.06 Aligned_cols=12 Identities=0% Similarity=-0.003 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 010914 165 EVDDVTRDIEAY 176 (497)
Q Consensus 165 qle~~~~E~d~Y 176 (497)
++..+..+...+
T Consensus 28 ~l~~l~~~~~~~ 39 (284)
T 1c1g_A 28 DKKAAEDRSKQL 39 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.66 E-value=1.3 Score=40.73 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 280 (497)
.+.+.+.+.|...|+++|.--+..+.....|+.++.+|++.=...=..|-..+..+-....++.++.+.+.+..+.+.+|
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 34555555566666666666555666666666665555433333333344455556666667777788888888888888
Q ss_pred hh
Q 010914 281 KR 282 (497)
Q Consensus 281 ~k 282 (497)
++
T Consensus 153 ~~ 154 (155)
T 2efr_A 153 KK 154 (155)
T ss_dssp HT
T ss_pred hc
Confidence 76
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.64 E-value=0.13 Score=54.40 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELK 229 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~ 229 (497)
+++++..+.++.+++..+++.++..++++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 33333333333333333333333333333
No 10
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=95.61 E-value=0.53 Score=39.89 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010914 173 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 252 (497)
Q Consensus 173 ~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~ 252 (497)
+.+-..-|+.++.+ +..+..++.+|+.++..+..+|..++.+..+++.+-.....+...+.-.--.|-.+..++
T Consensus 6 ~~~l~~eL~~l~~e------E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 6 SEQLQRELKELALE------EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556655542 456788899999999999999999999999888887777777666654444444444444
Q ss_pred HHHHHH
Q 010914 253 QFQLIA 258 (497)
Q Consensus 253 q~ql~~ 258 (497)
..++.-
T Consensus 80 ~~q~~~ 85 (96)
T 3q8t_A 80 ENQMRY 85 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.20 E-value=0.28 Score=51.85 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 228 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 228 l~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
+.+++.+.+.+..+-+++-++.+..+.++..++++++.++.+++..+.++..|++
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 3333333333333333444444444555555555555555555555555544443
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.13 E-value=1.2 Score=43.16 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=7.7
Q ss_pred eeecCCCceee
Q 010914 347 IIPMGSYPRIM 357 (497)
Q Consensus 347 LvPmGS~SkI~ 357 (497)
++.|=+|.+|.
T Consensus 222 Iv~Cp~CgRIL 232 (256)
T 3na7_A 222 MITCPYCGRIL 232 (256)
T ss_dssp CEECTTTCCEE
T ss_pred EEECCCCCeeE
Confidence 66777777774
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.11 E-value=1.6 Score=42.35 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
+.+|+..++.+...++.++.++..+.+.+..++..++
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.01 E-value=0.15 Score=59.19 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
++.++..|+++.+++++++.++.+|.+.+
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.22 E-value=0.87 Score=58.43 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 277 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qL 277 (497)
++++|.++|++.++..+++.+++.++.++++.=+++=.+|.....+...++++.+..+.+++.|..-+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666555445555566665566556666655555555555433
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.17 E-value=3.6 Score=38.30 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 010914 224 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS----SKIEVSQAHL 277 (497)
Q Consensus 224 l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~----~q~~~~~~qL 277 (497)
+...+..|+.+.+++..-+.+.-.+...++-.+..++.+..++. -++..+++.+
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~ 152 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRL 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33445555556666666666666666666666666666666655 4444444444
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.11 E-value=3.2 Score=39.34 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 010914 209 KLEAAIEETEKQNAEVNAELKELELKSKRF----KELEERYWQEFNNFQFQLIAHQEERDAISSK---IEVSQAHLELLK 281 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L----~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q---~~~~~~qLdkL~ 281 (497)
.|+++|+.+++....+...+..|+.+.... +..-.+.-...|.++.++..+....+.+..+ +++++..|++=.
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555555555555555555444433 3333345566888888888877777777654 444555554433
Q ss_pred h
Q 010914 282 R 282 (497)
Q Consensus 282 k 282 (497)
|
T Consensus 126 R 126 (189)
T 2v71_A 126 R 126 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.05 E-value=0.67 Score=41.71 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 263 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~ 263 (497)
+..|+.++..+-..|.++++++++|...+..++..++.+.+.+.++-+++-++++.++.+...++.++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888888888888888888888887777776777777777777776655433
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.33 E-value=4.8 Score=36.96 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 247 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 247 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 278 (497)
+....++..+-.+++++.+-+.+|...+..||
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666665
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.86 E-value=3 Score=53.67 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 153 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 153 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
|-...-..-|.++.+++...++.|..=|++|..
T Consensus 1899 eli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667777777788888888888763
No 21
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.36 E-value=4.9 Score=35.07 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 212 AAIEETEKQNAEVNAELKELELKSKR---FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~~~---L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 280 (497)
+.|..-..+++++.+++...++..++ |+.+=+-|-.+|-.=.-.-.....+.+.|..++.+.+.++.+|
T Consensus 38 eaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 38 EALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 33333444444444444444432222 2222233333333333333444555666666666666666554
No 22
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.61 E-value=7.8 Score=32.50 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=12.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 247 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 247 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 278 (497)
.....++.++..+.++...++..+.....++.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444443333
No 23
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=89.46 E-value=7.3 Score=32.25 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 277 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qL 277 (497)
+++.+++.+-..+...+...++.+.++......+..+. |+++.++.+.++.+..+.++-.....+|
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek--------------~~L~~ql~eaEe~~~~L~~~K~eLE~~l 79 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQK--------------NDLFGSMKQLEDKVEELLSKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544444444444444433 3444445566666666655544444444
Q ss_pred HHH
Q 010914 278 ELL 280 (497)
Q Consensus 278 dkL 280 (497)
.-|
T Consensus 80 ~el 82 (89)
T 3bas_A 80 ARL 82 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.23 E-value=7 Score=40.40 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010914 223 EVNAELKELELKSKRFKELEERYWQEFNNFQFQL 256 (497)
Q Consensus 223 ~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql 256 (497)
+.+++.+....+.+.+.++.++.-++..++..++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3333333333333333333333333333444433
No 25
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.13 E-value=9.1 Score=32.07 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 212 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
.....||++...|+.++..+.... -.....-|..+.+.++.++.....++..+..+++.....++.+++
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~--~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQG--KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555554321 223445688888889999998888888888888888888888774
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.06 E-value=10 Score=39.23 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 162 LDKEVDDVTRDIEAYEACLQRL 183 (497)
Q Consensus 162 Ld~qle~~~~E~d~Y~~fL~~L 183 (497)
++++-...+++.+++...+.++
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~ 379 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNG 379 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555544444
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.98 E-value=3.4 Score=37.91 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~ 235 (497)
.|..|++++..+..++..++.+.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.83 E-value=9.7 Score=30.82 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=24.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 247 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 247 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
.++..++..+..++++++.++.++..++..|+.-.+
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777777777777766554
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.46 E-value=9.6 Score=34.95 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 268 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~ 268 (497)
..+..|+.|...+..+|.+++.+..+..+.+..+..|...|. -++|.++-.+..+++|.+.|-.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq-------lq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT-------IENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666555555555555544444443 2344445555555555554443
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.14 E-value=7.4 Score=34.88 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 242 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE 242 (497)
+-.|--++..+.+.|+.+.++++.|+.+|..+...++..-
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554444333
No 31
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=86.28 E-value=13 Score=30.71 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
++.+++..-.+......+++.....+.++..+|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555444
No 32
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.86 E-value=20 Score=37.37 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCC-CCChH
Q 010914 270 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKI-PVEWD 317 (497)
Q Consensus 270 ~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~-~V~W~ 317 (497)
|+..+.||+.+..+|.+... .+ -++..|..+-+++. |-+|.
T Consensus 181 ye~qqKQL~qv~a~~llP~~-~~------q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVIAINLLPSR-DI------QYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhhhhcccccc-cc------ccccccccccccccCChhhc
Confidence 44455678888888877642 11 23666677766653 33455
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.16 E-value=17 Score=30.12 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
|+++|..+...+.++...+......|+
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~ 54 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444444444444444444333333333
No 34
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.38 E-value=19 Score=30.31 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRL 183 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L 183 (497)
++.+++.+..+..|.+.+..-...+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~ 28 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQA 28 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444433
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=83.03 E-value=7.9 Score=32.47 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
+-...|+...+.+..+++.|+++...+..++.+++.++.+
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466666666677777777777776666666655443
No 36
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.85 E-value=20 Score=30.06 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEA 178 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~ 178 (497)
+.+++.+..+..|.+.+..
T Consensus 5 d~iKkKm~~lk~e~e~a~d 23 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAID 23 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 37
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=81.77 E-value=19 Score=38.53 Aligned_cols=95 Identities=20% Similarity=0.341 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 170 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 249 (497)
Q Consensus 170 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~ 249 (497)
+.+..+|+.-|.++++...+ -.++.++.+.++..+-.+..+|.+.+++..++..++- ++++++.++.=..|=+++
T Consensus 8 q~~la~yq~elarvqkana~--aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Y---e~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANAD--AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADY---EAKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 44566788888877654211 1122333344444444555555555555555443322 222222222223445555
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 010914 250 NNFQFQLIAHQEERDAISSK 269 (497)
Q Consensus 250 n~~q~ql~~~~ee~~sl~~q 269 (497)
-+++.++...++++..+...
T Consensus 83 AeY~~kl~aYe~~~~~~~k~ 102 (497)
T 3iox_A 83 ADYPVKLKAYEDEQTSIKAA 102 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666544433
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.69 E-value=11 Score=38.60 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 212 AAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
+.++++|.|...++++|++++.+.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444433
No 39
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=80.94 E-value=22 Score=29.71 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
...+.+...+..++..++.+...++.++..++.+.
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444443
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.87 E-value=5.1 Score=32.51 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+++..+.+-.+|....+..|+++|++..+.+++|..|+.++..+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555566667778888887777777777766544
No 41
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.43 E-value=21 Score=29.47 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNA 226 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~ 226 (497)
..|.++.+++...++.+++
T Consensus 37 ~~L~~e~~e~~~~~~~L~~ 55 (81)
T 2jee_A 37 NSLSQEVQNAQHQREELER 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHH
Confidence 3333333333333333333
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.30 E-value=17 Score=29.40 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 162 LDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 162 Ld~qle~~~~E~d~Y~~fL~ 181 (497)
+++.+..+..|.+.+..-+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~ 23 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAE 23 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 43
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.16 E-value=37 Score=36.81 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 010914 269 KIEVSQAHLELLKRTNVLN 287 (497)
Q Consensus 269 q~~~~~~qLdkL~ktNV~N 287 (497)
-|+..|.||+.+-.+|+++
T Consensus 177 sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 177 DYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhcccCC
Confidence 4666777888888888877
No 44
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=80.09 E-value=28 Score=29.89 Aligned_cols=62 Identities=24% Similarity=0.441 Sum_probs=37.7
Q ss_pred HHHHHH-HHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 175 AYEACL-QRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 241 (497)
Q Consensus 175 ~Y~~fL-~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~e 241 (497)
+|..+- ++|. .++..++..|-..||.....++.+-..+..........+.+|+.|..+|..+
T Consensus 18 ~YE~~h~ErL~-----~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 18 TYERYHTESLQ-----NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 465543 4444 3566777777767776666666666555555555566666666666666543
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.59 E-value=18 Score=39.08 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=32.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHH
Q 010914 247 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQA 326 (497)
Q Consensus 247 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~ 326 (497)
.....||..+.+...+++-|+.-|+ .+++.-+---.-+-+|.|.++. +.+ |=
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId---iqirsCKgsCsr~~~~~vd~~s-------------------Y~~------~Q 182 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID---IKIRSCRGSCSRALAREVDLKD-------------------YED------QQ 182 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHGGGTBSCCCCCCCCHHH-------------------HHH------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccccchheeecchHH-------------------HHH------HH
Confidence 4445555555544444444443332 3455555444444455444432 222 44
Q ss_pred HHHHHHHHhhcCC
Q 010914 327 CLLLHTMCQYFRP 339 (497)
Q Consensus 327 ~LLL~tla~~l~~ 339 (497)
=.|.+.+|.-|-.
T Consensus 183 KQLeQv~a~dL~p 195 (562)
T 3ghg_A 183 KQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHhhcccCC
Confidence 5677778877654
No 46
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=79.06 E-value=32 Score=29.95 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
..|+.....+.-|++.|..-++....+... .-..+++++..|..+...+...|.+||.....++..-+... .-|+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~---~SLe 80 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI---VSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH---hhHH
Confidence 457888889999999999988776654321 12457888888999999999999999999988877554443 3455
Q ss_pred HHHHHHHHHH
Q 010914 240 ELEERYWQEF 249 (497)
Q Consensus 240 ~eE~~~w~e~ 249 (497)
+.|..|=+.+
T Consensus 81 D~E~k~n~ai 90 (111)
T 2v66_B 81 DFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5565555543
No 47
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.90 E-value=42 Score=30.74 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 252 FQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 252 ~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
++.....++.+.......++..+.||..|+.
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455566667777777764
No 48
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=77.73 E-value=28 Score=28.63 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010914 248 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 283 (497)
Q Consensus 248 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 283 (497)
+++.++..+-...-.+-.|+++++..+.+|.-|++.
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444455444444444556667777777777777763
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.99 E-value=8.3 Score=30.01 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 240 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 240 (497)
+-..+...|..+.++|+++..+|..++..|+.|...|.+
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888888888888888888877766653
No 50
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=76.25 E-value=12 Score=30.90 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
-...|+...+.+..+++.++++...+..++.+++..+
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666777777777777777666666544
No 51
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=75.96 E-value=24 Score=28.94 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.+|..-+..|+.|.++++..+..++.+.++|+
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 52
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=75.47 E-value=39 Score=29.08 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------ccCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEGEA-----------RDVLSEAD---FLKEKLKIEEEERKLEAAIEETEKQNAEV 224 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~-----------~~~~~ee~---l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 224 (497)
.+....++..+..+++.+..-|..|.... ...++... +..=+..|+........++..++.+.+..
T Consensus 21 ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~ 100 (150)
T 3ajw_A 21 VDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLA 100 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555543211 01122232 23334567777777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010914 225 NAELKELELKSKRFKELEERYWQEFNNFQF 254 (497)
Q Consensus 225 ~~El~~le~e~~~L~~eE~~~w~e~n~~q~ 254 (497)
..++.+...+.+.++.+.++...++.....
T Consensus 101 r~~l~~a~~~~k~~e~L~er~~~~~~~~~~ 130 (150)
T 3ajw_A 101 LKSWREKKQRLQAWQTLQDRQTAAALLAEN 130 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887777776654443
No 53
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=75.38 E-value=23 Score=29.04 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 236 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 236 (497)
.|+.+..+.|--|..-|..|+..+.+-+.+++..+.+++.|.+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555666666666655555555555555443
No 54
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=75.24 E-value=27 Score=34.18 Aligned_cols=73 Identities=11% Similarity=0.270 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
.|..+-+....+|+-|+=.+.-...||.++..++++|+..-+.....+-.++.+-..+++++.-++.+++..+
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777788888888888888777666666666666666666666666666655543
No 55
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=75.23 E-value=8.9 Score=38.48 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 174 EAYEACLQRLEGEARDVLSEADFLKEK-LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 174 d~Y~~fL~~L~~~~~~~~~ee~l~~e~-~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
++|..|++.- + ..+++.+++ .++++......++++.|+.+.+++.+|+++|+.+...+
T Consensus 153 ~~Y~~fl~~~--d-----~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 153 KCYESFMSGA--D-----SFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp HHHHHHHHTC--S-----CCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--c-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4588888721 1 112333332 23333333334466666666666666666665544333
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=75.03 E-value=78 Score=32.35 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 253 QFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 253 q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
+....+++.|...++.+++.+..+++++|+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346777788888888999999999999874
No 57
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.81 E-value=42 Score=29.16 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
|+..+...-..|..+|+.+...++.++..|.+++
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444445555555555555555555444443
No 58
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=73.74 E-value=46 Score=29.19 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q 010914 167 DDVTRDIEAYEACLQRLEGEARDVLSE-ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSK 236 (497)
Q Consensus 167 e~~~~E~d~Y~~fL~~L~~~~~~~~~e-e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El---------~~le~e~~ 236 (497)
..++.|.+.|..++.-|+++.. .+.. -++ ..+..+-++...+..+|..++.++.++.+++ .++-..
T Consensus 11 ~~L~~~~~~l~~L~~lL~~E~~-~L~~~~d~-~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~~-- 86 (154)
T 3opc_A 11 SCLERENALVVEFLHALEAETE-ALMDRRAH-ESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAAA-- 86 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHh--
Confidence 3455677778888887776542 1222 222 3566777788888888888888888775432 111111
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 010914 237 RFKELEERYWQEFNNFQFQLIAHQEERDA-ISSKIEVSQAHLELLKR 282 (497)
Q Consensus 237 ~L~~eE~~~w~e~n~~q~ql~~~~ee~~s-l~~q~~~~~~qLdkL~k 282 (497)
...=...|.....+-.+..+.-+.... +..++.+.+.-|+-|+.
T Consensus 87 --~~~l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 87 --HPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp --CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111135788877766665554443333 34567777777888873
No 59
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.15 E-value=38 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
+...-..|..+|+.+...++.++..|.++
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333444444444444444444444333
No 60
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=72.84 E-value=46 Score=28.75 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
...-|..|.++++.+..|+.....-+..+.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777776666655555443
No 61
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=72.03 E-value=46 Score=31.03 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER----------YWQEFNNFQFQLIAHQEERDA 265 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~----------~w~e~n~~q~ql~~~~ee~~s 265 (497)
+.+-...|..+..++..+++.||++...++.++..++.+...+++.+.. .--.-..+..|+.++..+-.+
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~A 126 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYA 126 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHH
Confidence 3444455677777788888888888888888888887755554433211 000112344667776666666
Q ss_pred HHHHHHHHH
Q 010914 266 ISSKIEVSQ 274 (497)
Q Consensus 266 l~~q~~~~~ 274 (497)
++.-+-+..
T Consensus 127 ieDaIy~L~ 135 (174)
T 2p22_A 127 LTDTIECLS 135 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655554443
No 62
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.03 E-value=15 Score=30.44 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
.+|+.++...-..+..+|.+.|+.+.+|..|++.++.+.++|
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555677777777777777777777666554
No 63
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.49 E-value=1.7 Score=47.24 Aligned_cols=16 Identities=13% Similarity=0.449 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 010914 169 VTRDIEAYEACLQRLE 184 (497)
Q Consensus 169 ~~~E~d~Y~~fL~~L~ 184 (497)
+++++..|..-|..++
T Consensus 333 ~~~~~~~~~~~~~~~~ 348 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQ 348 (575)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3344444444444433
No 64
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.22 E-value=48 Score=27.87 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 258 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~ 258 (497)
+...++.++....+++.++..|..+...++.+=+.+-..+...+..+.+
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666666655555544433444444444444433
No 65
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.90 E-value=61 Score=33.85 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRL 183 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L 183 (497)
+.+-++++.+..+...|...++..
T Consensus 44 E~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 44 EGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555566666666666655
No 66
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=69.70 E-value=37 Score=27.87 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
+|.+-..|+..+..++.+.+.-..+...++.|.
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443333333333333
No 67
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=69.20 E-value=60 Score=34.98 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.++.+|.+.+++.+||...++-..++.
T Consensus 315 p~~~Aer~~e~a~ael~~a~k~~a~~~ 341 (551)
T 2b5u_A 315 PVEAAERNYERARAELNQANEDVARNQ 341 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777666654444443
No 68
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=68.88 E-value=74 Score=29.53 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
.|++|++++..-+.+=..--.++++.. .++.+....+|..-.+|...+..|+..+..|++++..|+.
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~------tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSH------TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666666555555555432 2334444445555555555555555555555555555544
No 69
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.62 E-value=23 Score=29.46 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 240 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 240 (497)
+-...+..+..+.++|++|.+.|..++..|+.|...|..
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666788888999999999888888887766653
No 70
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=67.72 E-value=61 Score=28.14 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 154 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 154 C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
.....+..|++++..+..+++.|..++..|+... +.||..++....-|+++|......-....=|+.
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N-------------DDLER~~R~t~~SLeD~E~k~n~aiErnalLE~ 98 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN-------------DDLERAKRATIVSLEDFEQRLNQAIERNAFLES 98 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777776432 224444444444555555554444333334454
Q ss_pred HHH
Q 010914 234 KSK 236 (497)
Q Consensus 234 e~~ 236 (497)
|+.
T Consensus 99 El~ 101 (111)
T 2v66_B 99 ELD 101 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 71
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=67.47 E-value=34 Score=27.89 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEK 219 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~ 219 (497)
|+..|+.+...|+.++.+|+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 72
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.45 E-value=47 Score=27.27 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
|+.+-+++.+.|+++|.+...++..+..++..++.=.
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3445555666777777777777777777766554443
No 73
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=67.28 E-value=1.5e+02 Score=32.31 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 010914 267 SSKIEVSQAHLELLKRT 283 (497)
Q Consensus 267 ~~q~~~~~~qLdkL~kt 283 (497)
.++....+++++.|++.
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34556666777777776
No 74
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=67.16 E-value=55 Score=27.35 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH 259 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~ 259 (497)
+..+++.++....+++.++..|+.+...++.+=+.+-..+...+..+...
T Consensus 28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666666666555555444334444444444444333
No 75
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=66.75 E-value=71 Score=28.48 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 224 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 224 (497)
.+..+-+.+..+.+.|..-+..+... .+++..+...|+..-..|..++.++..+.+.+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~------~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKR------AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777776555544322 13444455556666666666666666555444
No 76
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=66.28 E-value=17 Score=30.28 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRF-----KELEERYWQEFNNFQ 253 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L-----~~eE~~~w~e~n~~q 253 (497)
|..++..|+.+.+++++++..++.+..+. -+.=-+..++||+.+
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiK 54 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIR 54 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHH
Confidence 34444444444444444444444332221 011114457777765
No 77
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=66.09 E-value=33 Score=30.25 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010914 262 ERDAISSKIEVSQAHLE 278 (497)
Q Consensus 262 e~~sl~~q~~~~~~qLd 278 (497)
+-..|..+|.-..+.||
T Consensus 72 eY~~L~KkYk~~~~~Ld 88 (119)
T 2avr_X 72 QYQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555554
No 78
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.86 E-value=67 Score=27.93 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
..|...|..+|+..+....++.+++.+..+++
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~ 58 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHK 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555554443
No 79
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.59 E-value=5 Score=43.51 Aligned_cols=39 Identities=10% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 241 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~e 241 (497)
++++..+|..+-..-++++..+.+++.+.+.+...+.++
T Consensus 389 ~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 427 (575)
T 2i1j_A 389 LQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQE 427 (575)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444555566666666666666666433
No 80
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.31 E-value=76 Score=27.96 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
.+++|+.|...++++|.++.++.++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 81
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=64.30 E-value=35 Score=33.52 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 253 QFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 253 q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
+.++...+.++.++++++..++.+|+.++.
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666666666666666554
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.27 E-value=20 Score=27.42 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 205 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.....|+.+.+.|+.+..+|..++..|+.|...|.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777777777777777766665554
No 83
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=63.70 E-value=28 Score=33.79 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 254 FQLIAHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 254 ~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
.++...+.+..++++++..++.+|+.++
T Consensus 121 ~~~~~~~a~l~~~~a~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 121 TEMAVKQAQIGTIDAQIKRNQASLDTAK 148 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666665544
No 84
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.97 E-value=80 Score=27.80 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 209 KLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
+|..||..|..+.....+|++.|..+
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444444333
No 85
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.83 E-value=21 Score=36.97 Aligned_cols=24 Identities=21% Similarity=0.309 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 212 AAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
.+++.|+++.+++++++++++.+.
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~ 33 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGM 33 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 86
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=62.25 E-value=68 Score=32.36 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhcccccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTR---DIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 158 Lle~Ld~qle~~~~---E~d~Y~~fL~~L~~~~~~~~-~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
-.++|+.++..+++ ...+|..+|.+|..+....+ +..++...+......|.++..+-.++...+++|+.+|+.|
T Consensus 25 ~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierL 102 (302)
T 3ibp_A 25 EQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERL 102 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666654 44557778888876643222 3456666664433333555555555555555555555554
No 87
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.13 E-value=77 Score=27.32 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=5.3
Q ss_pred HHHHHHHHHhc
Q 010914 175 AYEACLQRLEG 185 (497)
Q Consensus 175 ~Y~~fL~~L~~ 185 (497)
.|...+..|+.
T Consensus 17 ~ye~~I~~LR~ 27 (119)
T 3ol1_A 17 LYEEEMRELRR 27 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555554443
No 88
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=62.04 E-value=61 Score=26.15 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
+.+|.+-..|+..+..++...+.-..+...++.|.+.+
T Consensus 10 q~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 10 QEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444334444443333
No 89
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=61.54 E-value=45 Score=35.64 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
.++.+|.++.+++..++++|+.++.++.++|.++...
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566788888889999999999999999888876543
No 90
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=61.41 E-value=35 Score=29.65 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 010914 168 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKRF 238 (497)
Q Consensus 168 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El---------~~le~e~~~L 238 (497)
.+.++++.|..++.-++++..- +..-+ ...+..+-+++..+..+|..++.++.++.+.+ .++-.. ...
T Consensus 11 ~L~~~~~~l~~L~~lL~~E~~~-L~~~d-~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~ 87 (157)
T 2fup_A 11 LFAEDIGHANQLLQLVDEEFQA-LERRE-LPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-ccc
Confidence 4556777788888877765420 11111 12566778888889999999999988775543 111000 001
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 010914 239 KELEERYWQEFNNFQFQLIAHQEERDAI-SSKIEVSQAHLELLKRTN 284 (497)
Q Consensus 239 ~~eE~~~w~e~n~~q~ql~~~~ee~~sl-~~q~~~~~~qLdkL~ktN 284 (497)
..+=...|......-.++.+.-+....+ ..++++.+.-|+-|+..+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~~Ng~Li~~~l~~~~~~L~~L~~~~ 134 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQD 134 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111357887777766665544433333 456778888888887643
No 91
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=61.38 E-value=11 Score=25.28 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 214 IEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 214 L~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
-+.||+.++.++..+..|+.+.+.|+
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888887777777666554
No 92
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=59.89 E-value=79 Score=32.47 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 265 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~s 265 (497)
|+..|..--+.|...|++++..+.+++++|+...+...+++ ++.|.++=++..+...+|.
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID-------KRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccChHHHHHHHHHHH
Confidence 44455555666667777777777777666555544443333 5667777766665555554
No 93
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=59.47 E-value=23 Score=36.83 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
.|+.|..++.+++++++++.+++.++++.++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 94
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=59.33 E-value=68 Score=27.21 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 258 AHQEERDAISSKIEVSQAHLELLK 281 (497)
Q Consensus 258 ~~~ee~~sl~~q~~~~~~qLdkL~ 281 (497)
....+...+..++.+.+.++.+|.
T Consensus 65 kl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 65 KLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666655554
No 95
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=58.44 E-value=63 Score=28.68 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLK-EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~-e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.|.+.+..++++...+..-++.+.......-..+-+.. -...|+..+.+| ..|++|.....+++.++..++.++..++
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeL-e~leeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKL-SKLEELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888877765543211000010100 011222222222 1235677777777777777777776654
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 240 ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 280 (497)
Q Consensus 240 ~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 280 (497)
... .... .-+..++..+..-++.++-++..|+.+
T Consensus 89 ~~~-----~~~~--~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 89 ENN-----NVED--YFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp C---------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-----cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 0111 113333444444555556666666553
No 96
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.28 E-value=29 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 206 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
....|..+.+.|+.+...|..++..|+.+...|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666555543
No 97
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=58.08 E-value=74 Score=30.29 Aligned_cols=7 Identities=14% Similarity=0.320 Sum_probs=3.5
Q ss_pred hHHHHHH
Q 010914 151 CLECMRV 157 (497)
Q Consensus 151 C~eC~d~ 157 (497)
|.+|++.
T Consensus 130 ~~~~~~~ 136 (213)
T 1ik9_A 130 ALDTIAE 136 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 98
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.00 E-value=34 Score=27.87 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
++-...+..+..+.++|+++...|..++..|+.|...|.
T Consensus 32 ~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888999999999999988888877664
No 99
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=57.81 E-value=41 Score=35.39 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
++..++..|.++.+++..++++|+.++.++.++|..+..+.++. ++...+...+..++.+++++...++.++...
T Consensus 28 ~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (455)
T 2dq0_A 28 KWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV----DELLAKSREIVKRIGELENEVEELKKKIDYY- 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34466777888888899999999999999988888764322111 1223334444444444444444444433222
Q ss_pred HHHHHHhhcccCCCceeeee
Q 010914 275 AHLELLKRTNVLNDAFPIWH 294 (497)
Q Consensus 275 ~qLdkL~ktNV~Nd~F~I~h 294 (497)
.|+==|+..+.=+++.
T Consensus 103 ----~~~ipN~~~~~vP~g~ 118 (455)
T 2dq0_A 103 ----LWRLPNITHPSVPVGK 118 (455)
T ss_dssp ----HTTSCCCCCTTSCCCS
T ss_pred ----HHhCCCCCCccCCCCC
Confidence 2333466666555554
No 100
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.57 E-value=47 Score=28.43 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=22.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 146 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 146 IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
-+.|++.+ =++.+.++++.++.|++...+..+.|+.
T Consensus 5 ~~~~~~~e----~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 5 QSFLFSRE----EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp ----CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 3455777788888888888777777653
No 101
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.56 E-value=90 Score=26.72 Aligned_cols=82 Identities=11% Similarity=0.226 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cc--------------CCC--------------HHHHHHHHHHHH
Q 010914 157 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEA----RD--------------VLS--------------EADFLKEKLKIE 204 (497)
Q Consensus 157 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~----~~--------------~~~--------------ee~l~~e~~~Le 204 (497)
..++.+..++..+......|..+++.|+.-. .+ ..+ +-++.+...-++
T Consensus 15 ~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~ 94 (133)
T 1fxk_C 15 SQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIK 94 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHH
Confidence 3455666666777777777888776665311 00 000 111334444466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 205 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
.-.+.+...++.++++.+.+.+++..++.++.++
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777777777766655444
No 102
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=56.48 E-value=71 Score=34.04 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
..++..|.++-+++..++++|..++.++.++|..+..
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677888888888999999988888888877654
No 103
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.32 E-value=24 Score=25.86 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
|.+.+..+.+|.+..+++|.+++.+...|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 104
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=54.24 E-value=70 Score=28.12 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 010914 265 AISSKIEVSQAHLE 278 (497)
Q Consensus 265 sl~~q~~~~~~qLd 278 (497)
.+-.+|.-...+|+
T Consensus 75 ~l~k~Y~~~~keLd 88 (119)
T 3etw_A 75 ELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 105
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=54.22 E-value=1.1e+02 Score=26.49 Aligned_cols=45 Identities=11% Similarity=0.326 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 254 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ 254 (497)
+.++|.+...+.+++.+++.+++...+.++.+-.-|+.-+.+.+.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666666666666555555555544443
No 106
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.78 E-value=34 Score=35.35 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
++++.+.|.++.++++++.++++.++++++++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555433
No 107
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=53.62 E-value=29 Score=29.19 Aligned_cols=11 Identities=45% Similarity=0.468 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 010914 260 QEERDAISSKI 270 (497)
Q Consensus 260 ~ee~~sl~~q~ 270 (497)
..|++.+..+|
T Consensus 75 ~~e~d~~k~k~ 85 (90)
T 2wt7_B 75 ARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 108
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=53.41 E-value=49 Score=35.31 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 276 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 276 (497)
..++..|.++.+++..++++|..++.++.++|..+....++. +....+...+ .++...++.++.....+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~----~~l~~~~~~l-------~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDA----KDLIAEKEKL-------SNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH----HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888888888887765422111 1122233333 44444444444444444
Q ss_pred HHHH--hhcccCCCceeeeec
Q 010914 277 LELL--KRTNVLNDAFPIWHD 295 (497)
Q Consensus 277 LdkL--~ktNV~Nd~F~I~hd 295 (497)
++.+ +==|+..+.=+|+-|
T Consensus 101 ~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 101 LRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp HHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHhCCCCCCccCCCCCC
Confidence 4322 224777777677644
No 109
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=53.17 E-value=28 Score=23.63 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 216 ETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 216 ~LE~e~~~l~~El~~le~e~~~L 238 (497)
.|.+|.+.+..||..|+-|+..|
T Consensus 6 alkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 110
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.96 E-value=53 Score=26.57 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 010914 274 QAHLELLK 281 (497)
Q Consensus 274 ~~qLdkL~ 281 (497)
+.+||+++
T Consensus 60 qseLDKfr 67 (72)
T 3nmd_A 60 QNELDKYR 67 (72)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 33444444
No 111
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.83 E-value=72 Score=28.66 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHh
Q 010914 270 IEVSQAHLELLK 281 (497)
Q Consensus 270 ~~~~~~qLdkL~ 281 (497)
++..+.||..|+
T Consensus 119 l~~lq~QL~~LK 130 (135)
T 2e7s_A 119 LDTLTLQLKNLK 130 (135)
T ss_dssp C-----------
T ss_pred HHHHHHHHHHHH
Confidence 344445555544
No 112
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=52.69 E-value=1.3e+02 Score=26.82 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 162 LDKEVDDVTRDIEAYEACLQRL 183 (497)
Q Consensus 162 Ld~qle~~~~E~d~Y~~fL~~L 183 (497)
|+.+.+.+..+...+..-...|
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL 55 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEEL 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555555444444433333
No 113
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=52.39 E-value=2e+02 Score=30.81 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q 010914 157 VLSDKLDKEVDDVTRDIE----AYEACLQRLE 184 (497)
Q Consensus 157 ~Lle~Ld~qle~~~~E~d----~Y~~fL~~L~ 184 (497)
.-+..+++++..+++.-. +|+..|....
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~ 40 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANN 40 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777665433 3666665544
No 114
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.56 E-value=27 Score=29.87 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 206 EERKLEAAIEETEKQNAEVNAELKELELKSKR 237 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~ 237 (497)
+-..|.++|+.|+.|+.+|.+++..||.++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777777766543
No 115
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=49.87 E-value=13 Score=24.37 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 216 ETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 216 ~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.|.+..+++.+||..|+-|+..|+
T Consensus 4 rlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhc
Confidence 344555566666666665555543
No 116
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.67 E-value=1.4e+02 Score=26.33 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=31.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 148 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 224 (497)
Q Consensus 148 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 224 (497)
.|-|.+.... +..|-..+-...+.++....-| =+. ..++++-.+.+.+|++|-+...+++++.-++.+.+
T Consensus 49 ~~~~~~f~~~-~~ela~dli~k~kqIe~LIdsL---P~~---~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~l 118 (132)
T 1ykh_B 49 VVPPEEFSNT-IDELSTDIILKTRQINKLIDSL---PGV---DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (132)
T ss_dssp CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHS---TTT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhC---CCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455444333 2234444444445555443333 221 12455555555555555555555554444444333
No 117
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.00 E-value=21 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 205 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
.....|+.+++.|+.+..+|..++..|+.+...|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777776665554
No 118
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.74 E-value=29 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAEL 228 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El 228 (497)
+.|..|-.+|.+++++|.++.+++.+++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666655555544
No 119
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=48.56 E-value=1.2e+02 Score=27.40 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 192 SEADFLKEKLKIEEEERKLEAAIEETEKQNA 222 (497)
Q Consensus 192 ~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~ 222 (497)
++++-.+.+.+|++|-+...+++++.-++.+
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae 116 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555455555555555555554444444333
No 120
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.47 E-value=1.4e+02 Score=26.09 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 156 RVLSDKLDKEVDDVTRDIEA 175 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~ 175 (497)
|.+|+.|+.+++.+..|.+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766555544
No 121
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=48.40 E-value=33 Score=29.35 Aligned_cols=33 Identities=6% Similarity=0.162 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRFKE 240 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~ 240 (497)
..|.+||+.|+.++..|++.|..++..++.+.+
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666777777777777777777666665543
No 122
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=47.96 E-value=1.2e+02 Score=25.11 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
.|-+|-+.|.-.+.++|.|+.+.+..|++-++|+..|.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq 60 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 46667777888888888888888887777775555543
No 123
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=47.77 E-value=3e+02 Score=29.82 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010914 259 HQEERDAISSKIEVSQAH 276 (497)
Q Consensus 259 ~~ee~~sl~~q~~~~~~q 276 (497)
|+++...+.++++..+.+
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455555566665555544
No 124
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.62 E-value=1.4e+02 Score=25.82 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 205 EEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
.|..++...|..|+.+.+.+......|
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333344444444444333333333
No 125
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=47.58 E-value=2e+02 Score=30.18 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=13.7
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDV---TRDIEAYEACLQRL 183 (497)
Q Consensus 159 le~Ld~qle~~---~~E~d~Y~~fL~~L 183 (497)
|+.|+..++++ ..+...|...|+..
T Consensus 40 l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 40 LQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 44555554444 45666666666554
No 126
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=47.45 E-value=51 Score=25.48 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
.+.+|++--..|...+.+||..+.+.++||..|.+
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677787888999999999999999998887764
No 127
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.37 E-value=54 Score=25.34 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVN 225 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 225 (497)
+..+...|+.+-..|..++..|+.|...+.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555444443
No 128
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.23 E-value=1.3e+02 Score=25.52 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 010914 219 KQNAEVNAELKEL 231 (497)
Q Consensus 219 ~e~~~l~~El~~l 231 (497)
+++..++.|+++|
T Consensus 47 ~~~~~ie~ElEeL 59 (97)
T 2eqb_B 47 EEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 129
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.41 E-value=96 Score=33.09 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 010914 379 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 417 (497)
Q Consensus 379 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I 417 (497)
+.+...|-.++.-..++++. +.|||++
T Consensus 310 e~s~~e~e~ml~~~e~il~~------------LgLpyrv 336 (485)
T 3qne_A 310 EKSWEEFDRMIGCSEEFYQS------------LGLPYRV 336 (485)
T ss_dssp GGHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCcEEE
Confidence 56777777777666666542 6777776
No 130
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=45.78 E-value=90 Score=30.19 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 254 FQLIAHQEERDAISSKIEVSQAHL 277 (497)
Q Consensus 254 ~ql~~~~ee~~sl~~q~~~~~~qL 277 (497)
.++...+.++..++++++.++.+|
T Consensus 128 a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 128 AQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444333
No 131
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=44.81 E-value=62 Score=32.81 Aligned_cols=12 Identities=17% Similarity=0.601 Sum_probs=8.1
Q ss_pred ChHHHHHHHHHH
Q 010914 315 EWDEINAAWGQA 326 (497)
Q Consensus 315 ~W~EINAAwGQ~ 326 (497)
.|.|-=.++|.+
T Consensus 129 ~W~~Yk~GFG~~ 140 (323)
T 1lwu_C 129 DWVSYREGFGYL 140 (323)
T ss_dssp CHHHHHHCEEEE
T ss_pred CHHHHhhhhCCc
Confidence 677777777654
No 132
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.79 E-value=1.1e+02 Score=32.01 Aligned_cols=28 Identities=11% Similarity=0.408 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 010914 379 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 418 (497)
Q Consensus 379 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I~ 418 (497)
+.+...|-.++.-..+++.. +.|||++.
T Consensus 314 e~s~~~~~e~l~~~~~il~~------------LGL~yrv~ 341 (455)
T 2dq0_A 314 EESWEWHEKIIRNAEELFQE------------LEIPYRVV 341 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHHH------------TTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------cCCceEEE
Confidence 56777777777666666643 67788764
No 133
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.70 E-value=1.3e+02 Score=24.65 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 156 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 226 (497)
Q Consensus 156 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~ 226 (497)
|.|--.|+..+.+...|.++..+--+.|.... ..+..-+.+|+.|+..+...++-+....+++..
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~------~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGH------QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666655554444443221 223444566777777777777777776666543
No 134
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.33 E-value=1.2e+02 Score=31.44 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 010914 379 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 417 (497)
Q Consensus 379 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I 417 (497)
+.+...|-.++.-..+++.. +.|||++
T Consensus 289 e~s~~~~~e~~~~~~~il~~------------LGL~~rv 315 (421)
T 1ses_A 289 EASDRAFQELLENAEEILRL------------LELPYRL 315 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCceEE
Confidence 56777666666666666642 6788875
No 135
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=44.12 E-value=57 Score=33.90 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 206 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
|...|..||.+++++.++++++++.++.+.+.+.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666655544443
No 136
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=42.92 E-value=1.3e+02 Score=24.22 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 010914 211 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 256 (497)
Q Consensus 211 ~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql 256 (497)
...+..+.+|++++.+.++.++.+...+.++|.+.-.....|..++
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777666655544333333444443
No 137
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=42.60 E-value=1.6e+02 Score=25.37 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 010914 265 AISSKIEVSQAHL 277 (497)
Q Consensus 265 sl~~q~~~~~~qL 277 (497)
++++++...+.+|
T Consensus 86 alq~KiaeLKrqL 98 (107)
T 2k48_A 86 TLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334443333333
No 138
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.52 E-value=60 Score=33.66 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 230 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 230 (497)
..++..+.++.+++..++++|+.++.++.++|.+
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667788888888888888888888887765
No 139
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=42.12 E-value=1.7e+02 Score=25.38 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010914 237 RFKELEERYWQEFNNFQFQLIAHQEERDAISSK 269 (497)
Q Consensus 237 ~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 269 (497)
.|.++-..|-+..++.+.++..+...|..+..+
T Consensus 60 ~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~e 92 (112)
T 1x79_B 60 LLEELQQGLSQAKRDVQEQMAVLMQSREQVSEE 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666667776666666555443
No 140
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=42.09 E-value=1e+02 Score=30.08 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=27.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 010914 249 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 308 (497)
Q Consensus 249 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGr 308 (497)
+...+.++...+.++..++++++.++.+|+ ++.|... .||.+..+| ...|.
T Consensus 124 ~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~---~~~i~AP-----~~G~V~~~~-~~~G~ 174 (369)
T 4dk0_A 124 LNNAKAEMDVVQENIKQAEIEVNTAETNLG---YTKITSP-----IDGTVISTP-VSEGQ 174 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSSCCCS-----CCSCCCBCC-CCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCEEECC-----CCeEEEEee-CCCCC
Confidence 344445555556666677777777776654 4444332 356554443 24443
No 141
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=41.91 E-value=3.2e+02 Score=28.39 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 242 EERYWQEFNNFQFQLIAHQEERDAISSKIEVS 273 (497)
Q Consensus 242 E~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 273 (497)
++.|-..+..+......+..+...+..+++..
T Consensus 205 ~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~l 236 (486)
T 3haj_A 205 KEKYEKSLKELDQGTPQYMENMEQVFEQCQQF 236 (486)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 142
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=41.86 E-value=1e+02 Score=24.99 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010914 165 EVDDVTRDIEAYEACLQRL 183 (497)
Q Consensus 165 qle~~~~E~d~Y~~fL~~L 183 (497)
+++.+..++.....-+..|
T Consensus 23 Ele~le~~Ie~LE~~i~~l 41 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEAL 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 143
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.25 E-value=50 Score=27.47 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 230 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 230 (497)
++..+...|+.|-..|..+|++|++|...+..-+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666655554433
No 144
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=40.68 E-value=2e+02 Score=26.09 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=7.9
Q ss_pred HHHHHHHHhhcccCCCc
Q 010914 273 SQAHLELLKRTNVLNDA 289 (497)
Q Consensus 273 ~~~qLdkL~ktNV~Nd~ 289 (497)
....+.+|..-|-+.++
T Consensus 99 LeAE~aKLeEekQIseA 115 (146)
T 2xnx_M 99 LTIEKAKLEEEKQISDA 115 (146)
T ss_dssp HHHHHHHHGGGTTTC--
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 44455556555554443
No 145
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=40.32 E-value=41 Score=23.59 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
....++|++|+++.+.|+++++.||
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 3445677777777777777776553
No 146
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.91 E-value=3e+02 Score=28.63 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhcCCCC
Q 010914 325 QACLLLHTMCQYFRPKF 341 (497)
Q Consensus 325 Q~~LLL~tla~~l~~kf 341 (497)
|-=.|+.+++..|-...
T Consensus 184 qqKQL~qv~a~~llP~~ 200 (390)
T 1deq_A 184 QQKQLEQVIAINLLPSR 200 (390)
T ss_pred HHHHHHhhhhhcccccc
Confidence 34448888887664444
No 147
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=38.86 E-value=2.4e+02 Score=26.17 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
.+++.+..+.+-++.|....+.++
T Consensus 130 ~~~~~~~~l~Kak~~Y~~~c~e~e 153 (276)
T 2v0o_A 130 TIQSITQALQKSKENYNAKCVEQE 153 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555655444443
No 148
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.71 E-value=3.8e+02 Score=28.41 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
.+-|-++-+.++++.+.-+..|..|+.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 444555555566666666677776654
No 149
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.64 E-value=38 Score=27.45 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 200 KLKIEEEERKLEAAIEETEKQNAEVNAELK 229 (497)
Q Consensus 200 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~ 229 (497)
+..|+.++.++..+.+.|..+...+.++|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777777766666554
No 150
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=38.17 E-value=1.9e+02 Score=24.81 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAEL 228 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El 228 (497)
|.-.|+++|...+++.++.
T Consensus 35 LKD~LEe~eE~~aql~Re~ 53 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQY 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333
No 151
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=38.14 E-value=1.3e+02 Score=22.65 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 199 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 199 e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
.+.+|++--..|...+.+||..+.++++|+..|.+
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 44567777777888889999999888888777754
No 152
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.11 E-value=86 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEV 224 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l 224 (497)
..|+.+-..|..++..|+.+...+
T Consensus 33 ~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 33 DQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 153
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=38.11 E-value=3.6e+02 Score=27.95 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=7.4
Q ss_pred eccccCCCCCCCCCChHHHHHH
Q 010914 301 INNFRLGRLPKIPVEWDEINAA 322 (497)
Q Consensus 301 INGlRLGrlp~~~V~W~EINAA 322 (497)
|+..+-|--| .+++..|-+..
T Consensus 287 i~~~gtG~~~-~~p~Fe~y~~~ 307 (486)
T 3haj_A 287 RANHGPGMAM-NWPQFEEWSAD 307 (486)
T ss_dssp HHHHSTTSCC-CCCCC------
T ss_pred HHHhCCCCCC-CCCCceeCCch
Confidence 4555556433 34555554443
No 154
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.06 E-value=76 Score=24.05 Aligned_cols=23 Identities=9% Similarity=0.214 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEV 224 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l 224 (497)
.|+.+-..|..++..|+.|...+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 155
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.77 E-value=1.3e+02 Score=24.37 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
++...+.+||..-.=++..|++|-....+...+|..|+.+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~q 50 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAEL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444333333333333333
No 156
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.68 E-value=1.6e+02 Score=23.71 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
+.+.|+++|.+...++..+..++..++.=.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776554443
No 157
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=37.56 E-value=2.5e+02 Score=26.02 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHHH
Q 010914 231 LELKSKRFKELEERYWQ-EFNNFQFQLIAH 259 (497)
Q Consensus 231 le~e~~~L~~eE~~~w~-e~n~~q~ql~~~ 259 (497)
|..|+..+.+....|.. .+..|-.-+..+
T Consensus 202 L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f 231 (251)
T 2fic_A 202 LQEELPSLWNSRVGFYVNTFQSIAGLEENF 231 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443322 444443333333
No 158
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.49 E-value=1e+02 Score=32.96 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 010914 379 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 417 (497)
Q Consensus 379 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I 417 (497)
+.+...|-.++.-..+++.. +.|||++
T Consensus 345 e~s~~~~e~~l~~~~~il~~------------LgLpyrv 371 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTE------------LGLHFRV 371 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCcEEE
Confidence 37777777777666666642 6778876
No 159
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.47 E-value=1.2e+02 Score=22.10 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAE 227 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~E 227 (497)
|+.||..+|+..+.+...
T Consensus 25 leselqalekklaalksk 42 (48)
T 1g6u_A 25 LESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555554444443
No 160
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=37.33 E-value=4.1e+02 Score=28.37 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 010914 270 IEVSQAHLELLKRTNVLND 288 (497)
Q Consensus 270 ~~~~~~qLdkL~ktNV~Nd 288 (497)
|+..|.||+.+..+|+++.
T Consensus 179 Ye~~QKqLeQv~a~dL~p~ 197 (491)
T 1m1j_A 179 YDNIQKHLTQASSIDMHPD 197 (491)
T ss_dssp THHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhhccccCCc
Confidence 4556789999999999874
No 161
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.21 E-value=56 Score=24.67 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 198 KEKLKIEEEERKLEAAIEETEK 219 (497)
Q Consensus 198 ~e~~~Le~EE~~L~~eL~~LE~ 219 (497)
.|...|+.+-..|.++++++.+
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 162
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.99 E-value=46 Score=27.33 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 200 KLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 200 ~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
+..|+.++..+..+++.|.++...|.++|..|
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45577777777777777777777777776665
No 163
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.25 E-value=38 Score=27.15 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKE 230 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~ 230 (497)
..|+.+...|..++++|..+...+.+++..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666655555543
No 164
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.87 E-value=1.7e+02 Score=23.53 Aligned_cols=35 Identities=31% Similarity=0.280 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 209 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 243 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~ 243 (497)
.|...+..+.+|++++...++.++.+...+.++|.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~ 37 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEI 37 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777788888888887777777664443
No 165
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=35.80 E-value=1.1e+02 Score=28.75 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 259 HQEERDAISSKIEVSQAHLE 278 (497)
Q Consensus 259 ~~ee~~sl~~q~~~~~~qLd 278 (497)
.+.+..+.+++++.++.+|+
T Consensus 110 a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 110 ANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33344445555555554443
No 166
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=35.56 E-value=1.1e+02 Score=31.46 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSE--ADFLKEKLKIEEEERKLEAAIEET 217 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~e--e~l~~e~~~Le~EE~~L~~eL~~L 217 (497)
.++.+++++++||+....-|+..........++ .+.....+.|.+++..|.+||..+
T Consensus 13 ~id~~I~~i~~eRd~La~~lq~~~~~~~~~~~~~~~~~~~d~e~llkre~~Lt~EL~~l 71 (355)
T 3etv_A 13 NINDRIKQVQNERNELASKLQNLKQSLASNDTGGGSGGGSDSSDLLQREAILANELNIL 71 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999998877422100011 122223344556666666666443
No 167
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.53 E-value=2.2e+02 Score=24.76 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEET 217 (497)
Q Consensus 203 Le~EE~~L~~eL~~L 217 (497)
|..|-..|..+|+.+
T Consensus 20 Lkreie~lk~ele~l 34 (120)
T 3i00_A 20 LYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 168
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=33.87 E-value=85 Score=21.27 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le 232 (497)
|.+|+..|.+|.+.+.=||..|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 169
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=33.86 E-value=2.6e+02 Score=25.03 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 010914 162 LDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 162 Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
...+++.+.+..+.=.+-.+.|+
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE 44 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIE 44 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 170
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.50 E-value=48 Score=32.66 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 212 AAIEETEKQNAEVNAELKELELKS 235 (497)
Q Consensus 212 ~eL~~LE~e~~~l~~El~~le~e~ 235 (497)
.++..|+.+.+.|.++++.++.|+
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El 84 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQL 84 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333333434444433333
No 171
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.49 E-value=4.6e+02 Score=27.80 Aligned_cols=7 Identities=29% Similarity=0.111 Sum_probs=4.6
Q ss_pred eeeeecC
Q 010914 345 IKIIPMG 351 (497)
Q Consensus 345 YkLvPmG 351 (497)
|.|.|.+
T Consensus 230 Y~I~p~~ 236 (464)
T 1m1j_B 230 YIIQPDP 236 (464)
T ss_dssp EEECSST
T ss_pred EEEEeCC
Confidence 6677765
No 172
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.14 E-value=1.3e+02 Score=25.04 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 205 EEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 205 ~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
.|...-.++|+.+|++......-|+.|
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444
No 173
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=33.09 E-value=76 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 214 IEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 214 L~~LE~e~~~l~~El~~le~e~~~L 238 (497)
=++|.++.++-+.||..|+.+-.+|
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444445555555555444333
No 174
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.85 E-value=2.5e+02 Score=24.48 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVN 225 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~ 225 (497)
+.+.+++.+|++..+.++
T Consensus 91 ~~l~~~i~~L~~~~~~L~ 108 (142)
T 3gp4_A 91 IELKNRIDVMQEALDRLD 108 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 175
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.79 E-value=3.2e+02 Score=25.78 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 236 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~ 236 (497)
.+|-.|-..|.++|+..+.|.+.+..++..++.+..
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345555555666666555555555555555555543
No 176
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=32.62 E-value=3.3e+02 Score=25.80 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQ 260 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e~~~L~-~eE~~~w~e~n~~q~ql~~~~ 260 (497)
|.++.+.++.+..++.++++++-....+++ ++=.+|-.-+|+-+..+.+++
T Consensus 144 L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 144 LQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333344444444444444444433333332 223356666676666665544
No 177
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=32.57 E-value=2.4e+02 Score=25.32 Aligned_cols=43 Identities=5% Similarity=0.128 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCceeeeec
Q 010914 253 QFQLIAHQEERDAISSKIEVSQAHLELLKRTN-VLNDAFPIWHD 295 (497)
Q Consensus 253 q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktN-V~Nd~F~I~hd 295 (497)
+.+...+...+.....++..|....+||+|-+ -+=-+|++-|.
T Consensus 44 E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 44 ENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 34444455566677788899999999999873 23334555444
No 178
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.29 E-value=2.9e+02 Score=26.11 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=12.8
Q ss_pred HHHHHhhcccCCC----ceeeeecCCee
Q 010914 276 HLELLKRTNVLND----AFPIWHDGEFG 299 (497)
Q Consensus 276 qLdkL~ktNV~Nd----~F~I~hdG~fG 299 (497)
+|-=|+=.|++++ .|.+..-|.=|
T Consensus 80 ~LTGl~V~~~~ed~~~~~FDc~Qtg~nG 107 (190)
T 4emc_A 80 YLCNVRVHKSYEDDSGLWFDISQGTHSG 107 (190)
T ss_dssp HHHSEECCCCCCCSSCEEEEEEESCCC-
T ss_pred HccCcEEEEEEEcCCCeEEEEEecCCCC
Confidence 4555666777765 44444445444
No 179
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=32.05 E-value=21 Score=25.05 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.6
Q ss_pred hHHHHHHHhhHHHHHHHH
Q 010914 438 TKALKYTLCNLKWALFWF 455 (497)
Q Consensus 438 TkAlK~lLtNlKWlLaw~ 455 (497)
..|+|||||-+.++-+-.
T Consensus 5 ~LALKYLLTPv~~l~a~~ 22 (36)
T 3bua_E 5 GLALKYLLTPVNFFQAGY 22 (36)
T ss_pred HHHHHHHhhhHHHHhccc
Confidence 469999999999886543
No 180
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.73 E-value=2.5e+02 Score=24.18 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVN 225 (497)
Q Consensus 213 eL~~LE~e~~~l~ 225 (497)
|++.|..+..++.
T Consensus 19 e~~~l~~~~~el~ 31 (125)
T 1joc_A 19 EIEKLQTKVLELQ 31 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 181
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=31.62 E-value=92 Score=30.25 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 203 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~ee~l~~e~~~L 203 (497)
=++.|++|-..++...+.|..-|....+.. .+.++++++.+++..+
T Consensus 43 rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~ 90 (267)
T 3tkl_B 43 KLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAF 90 (267)
T ss_dssp --------------------------------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 344556666666666677777666655432 3345556655544433
No 182
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=31.05 E-value=2.1e+02 Score=25.09 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 197 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 197 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
.+...-++.-.+.+...++.+++..+.+.+++..++..+.++
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566666666677777777776666666666555444
No 183
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.03 E-value=45 Score=34.65 Aligned_cols=92 Identities=14% Similarity=0.274 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
++..++..+.++.+++..++++|+.++.++.++|.++....++. ++...+...+..++.+++++...++.++...
T Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 101 (425)
T 2dq3_A 27 SLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT----TEIQNRVKELKEEIDRLEEELRKVEEELKNT- 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34567777888888899999999999998888887653221100 1122333334444444444444444443322
Q ss_pred HHHHHHhhcccCCCceeeeec
Q 010914 275 AHLELLKRTNVLNDAFPIWHD 295 (497)
Q Consensus 275 ~qLdkL~ktNV~Nd~F~I~hd 295 (497)
.|+=-|+.++.=+++.|
T Consensus 102 ----~~~ipN~~~~~vp~g~~ 118 (425)
T 2dq3_A 102 ----LLWIPNLPHPSVPVGED 118 (425)
T ss_dssp ----HHTSCCCCCTTSCCCSS
T ss_pred ----HHhCCCCCCCCCCCCCC
Confidence 23445777766666543
No 184
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=30.98 E-value=2.9e+02 Score=24.63 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEA 178 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~ 178 (497)
.+.|+++-++...|+..|..
T Consensus 28 ~e~l~kE~e~k~eeKkkiLa 47 (133)
T 1j1d_C 28 KQELEREAEERRGEKGRALS 47 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766654
No 185
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.26 E-value=80 Score=21.40 Aligned_cols=8 Identities=38% Similarity=0.385 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010914 217 TEKQNAEV 224 (497)
Q Consensus 217 LE~e~~~l 224 (497)
||+|.++.
T Consensus 6 lekevaqa 13 (33)
T 1fmh_A 6 LEKEVAQA 13 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 186
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.17 E-value=1.8e+02 Score=28.68 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 010914 201 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ-EFN 250 (497)
Q Consensus 201 ~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~-e~n 250 (497)
.++++.-.++..++.+++++..++++++.+++....-++.+ ..|. .++
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L--~p~~~~ld 143 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL--AALAHGLD 143 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hhhhccCC
Confidence 34455566666777777777777777777777663223322 3466 443
No 187
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.12 E-value=70 Score=33.31 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=5.2
Q ss_pred CCChHHH
Q 010914 313 PVEWDEI 319 (497)
Q Consensus 313 ~V~W~EI 319 (497)
.|.|+.|
T Consensus 168 ~v~~~di 174 (428)
T 4b4t_K 168 DVTYADV 174 (428)
T ss_dssp SCCGGGS
T ss_pred CCCHHHh
Confidence 4888876
No 188
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.71 E-value=2.2e+02 Score=30.24 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 010914 381 AMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 417 (497)
Q Consensus 381 AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~I 417 (497)
+...|-.++.-..++... +.|||++
T Consensus 335 s~~e~e~~~~~~e~il~~------------LGLpyrv 359 (484)
T 3lss_A 335 SWRHLEDMITTSEEFNKS------------LGLPYRV 359 (484)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHH------------cCCcEEE
Confidence 666666665555555542 5777877
No 189
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.68 E-value=1.2e+02 Score=22.24 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEK 219 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~ 219 (497)
+++...+.++-.|..+-+++|.++++
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333333333
No 190
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.90 E-value=2.5e+02 Score=23.40 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 214 IEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 214 L~~LE~e~~~l~~El~~le~e~~~L 238 (497)
...||.+...+..++..|..|...+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333
No 191
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.74 E-value=5.1e+02 Score=26.89 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 254 FQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 254 ~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
.++..++....++..+++..+.++..|..
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666654
No 192
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=28.71 E-value=4.7e+02 Score=26.45 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 150 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL--SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 227 (497)
Q Consensus 150 LC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~--~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~E 227 (497)
++......+++.|..-+.+..+.++.|.....++.++..... .-+...+...+...+.+......++..+. .++++-
T Consensus 91 lae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~-ke~eK~ 169 (406)
T 4dyl_A 91 HAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKD-KDRDKA 169 (406)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC----------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHhh
Q 010914 228 LKELELKSKRFKELEERYWQEFNNFQFQLIA-HQEERDAISSKIEVSQ-AHLELLKR 282 (497)
Q Consensus 228 l~~le~e~~~L~~eE~~~w~e~n~~q~ql~~-~~ee~~sl~~q~~~~~-~qLdkL~k 282 (497)
...++.....+..-..+|-...+.+...... +...+..+...++... ..+..|+.
T Consensus 170 ~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~Ri~~lk~ 226 (406)
T 4dyl_A 170 KDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKE 226 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 193
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.66 E-value=97 Score=24.67 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 211 EAAIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 211 ~~eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
...+.+||.+...-+++|..|+.++.++
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666777777776655444
No 194
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=28.35 E-value=3.3e+02 Score=24.55 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
+.+.+....|....+.|..++..++++...+..+|+++-
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~ 48 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566777777777777777777777777776653
No 195
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.29 E-value=81 Score=24.42 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELEL 233 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~ 233 (497)
..|..+++.|+.+...|..++..|..
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 196
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.17 E-value=2.8e+02 Score=23.28 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010914 154 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 185 (497)
Q Consensus 154 C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 185 (497)
|...-|+.|+++++...+.++.-..-.+-..+
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~ 50 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEK 50 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445667888888888887776666655443
No 197
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.02 E-value=2.7e+02 Score=23.14 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010914 157 VLSDKLDKEVDDVTRDIE 174 (497)
Q Consensus 157 ~Lle~Ld~qle~~~~E~d 174 (497)
.|.+.++.+|..+..++.
T Consensus 15 elFe~YE~df~~l~~~i~ 32 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQ 32 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466667777666655553
No 198
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=26.99 E-value=71 Score=26.31 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
+..|+..++.+++|||-|-.-|+.++
T Consensus 10 i~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 10 LVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 199
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.90 E-value=3.1e+02 Score=23.76 Aligned_cols=22 Identities=9% Similarity=0.344 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQ 181 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~ 181 (497)
.+|+.+++.+..+++.-..|++
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~ 37 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 200
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=26.45 E-value=1.6e+02 Score=29.81 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCHHHHHHHHHHH
Q 010914 155 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 203 (497)
Q Consensus 155 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~ee~l~~e~~~L 203 (497)
.+.=++.|++|-..++...+.|..-|....+.. .+.++.+++.+++.++
T Consensus 23 L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l 73 (384)
T 3tnf_B 23 LEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAF 73 (384)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 344456677777777777777887776555432 3445566665554444
No 201
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=26.32 E-value=42 Score=27.04 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 242 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE 242 (497)
++...+..+...-.-+..=|.+-|...+.+..+++-|+.|+.+++..+
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhH
Confidence 333333333333344555566677777777777777887777776443
No 202
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=26.30 E-value=3.7e+02 Score=24.36 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 211 EAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 211 ~~eL~~LE~e~~~l~~El~~le~e 234 (497)
.+.+..++.|+++|+-+.+.+..|
T Consensus 35 ~~~i~q~d~elqQLefq~kr~~~e 58 (150)
T 4dci_A 35 SNGIANADQQLAQLEQEGQTVVDQ 58 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444333
No 203
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=26.29 E-value=4.5e+02 Score=25.37 Aligned_cols=111 Identities=20% Similarity=0.279 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHH
Q 010914 160 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQN-AEVNAELK-ELELKSKR 237 (497)
Q Consensus 160 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~-~~l~~El~-~le~e~~~ 237 (497)
..+.+.+..+..=-.+|...++++-..........++-..+.++-..-+.++..++..-+.. .++-..|+ .++...+.
T Consensus 39 ~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL~~kie~d~K~ 118 (253)
T 2ykt_A 39 KNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRY 118 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45777777777777888888888764322222225666555555555555555555433332 11222222 23445555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010914 238 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 284 (497)
Q Consensus 238 L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktN 284 (497)
+...++.|..+|..... .++-++..+-+|+|..
T Consensus 119 v~~~~K~~~~e~k~~~~--------------~l~K~~~e~~kl~KK~ 151 (253)
T 2ykt_A 119 LSAALKKYQTEQRSKGD--------------ALDKCQAELKKLRKKS 151 (253)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhHh--------------HHHHHHHHHHHHHhhc
Confidence 66667777777654332 2345555677777754
No 204
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=26.21 E-value=2.7e+02 Score=22.88 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRF 238 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L 238 (497)
.|.+++...++.+.-|..++.|...+
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444454444455555555444
No 205
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.45 E-value=2.8e+02 Score=22.67 Aligned_cols=41 Identities=7% Similarity=0.230 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 208 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 248 (497)
Q Consensus 208 ~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e 248 (497)
-+|...|+++..|.++|.-+++.+.-+...+.+.-+.++.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666665554444443
No 206
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.40 E-value=75 Score=27.46 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLE 184 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~ 184 (497)
+..|+..++.+++|||-|-.-|+.++
T Consensus 27 i~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 27 IEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577778888888888888887765
No 207
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.20 E-value=66 Score=24.53 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 203 IEEEERKLEAAIEETEKQNA 222 (497)
Q Consensus 203 Le~EE~~L~~eL~~LE~e~~ 222 (497)
|+.+-..|..++..|+.+..
T Consensus 34 L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433333
No 208
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.00 E-value=1.2e+02 Score=25.78 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=9.6
Q ss_pred HhhcccCCCceeeeecCCeee
Q 010914 280 LKRTNVLNDAFPIWHDGEFGT 300 (497)
Q Consensus 280 L~ktNV~Nd~F~I~hdG~fGT 300 (497)
|++...|.+-.-|--..|-||
T Consensus 56 i~~i~~f~~qtviaIkAP~gT 76 (106)
T 2aze_B 56 LRSIADPAEQMVMVIKAPPET 76 (106)
T ss_dssp HHTTSCTTTEEEEEEECCTTC
T ss_pred HhcCcCCCcCeEEEEECCCCC
Confidence 444444544444444444444
No 209
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.66 E-value=3.5e+02 Score=24.50 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 200 KLKIEEEERKLEAAIEETEK 219 (497)
Q Consensus 200 ~~~Le~EE~~L~~eL~~LE~ 219 (497)
...++.+..+|..+...++.
T Consensus 35 ~~~le~e~~kl~~e~~i~ea 54 (146)
T 2xnx_M 35 ALEKELEEKKKALELAIDQA 54 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 210
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.61 E-value=3.2e+02 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 161 KLDKEVDDVTRDIEAYEACLQRL 183 (497)
Q Consensus 161 ~Ld~qle~~~~E~d~Y~~fL~~L 183 (497)
.+..++..++.+...+..-+++|
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L 31 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRL 31 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Confidence 34555555555555544444443
No 211
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.58 E-value=93 Score=32.24 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcee
Q 010914 379 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYK 416 (497)
Q Consensus 379 D~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~LPY~ 416 (497)
+.+...+..++.-..+++.. +.|||+
T Consensus 293 e~s~~~~~e~i~~~~~il~~------------LGL~~r 318 (425)
T 2dq3_A 293 DTSYDELEKLVKDAEEVLQL------------LGLPYR 318 (425)
T ss_dssp GGHHHHHHHHHHHHHHHHHH------------HTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCceE
Confidence 45666666666666666643 677888
No 212
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.34 E-value=1.4e+02 Score=30.29 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=6.4
Q ss_pred ceeeeecCC
Q 010914 344 RIKIIPMGS 352 (497)
Q Consensus 344 ~YkLvPmGS 352 (497)
-|.|.|-|+
T Consensus 89 vY~I~p~~~ 97 (323)
T 1lwu_C 89 LYYIKPLKA 97 (323)
T ss_dssp EEEECCTTC
T ss_pred EEEEecCCC
Confidence 388888763
No 213
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.22 E-value=1e+02 Score=30.29 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=3.0
Q ss_pred ccCCCCC
Q 010914 304 FRLGRLP 310 (497)
Q Consensus 304 lRLGrlp 310 (497)
+|..-.|
T Consensus 122 ~~V~Vsp 128 (251)
T 3m9b_A 122 MRLTCSP 128 (251)
T ss_dssp CEECBCT
T ss_pred EEEEeCC
Confidence 4444444
No 214
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=24.19 E-value=1.9e+02 Score=23.10 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 202 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 202 ~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
+|..+-..|..+|..+|..-.-.. ++..|+.+...|+
T Consensus 21 ~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LK 57 (76)
T 1zhc_A 21 KIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLK 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhH
Confidence 344555555555555554433222 4445544444443
No 215
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=24.16 E-value=3.6e+02 Score=23.56 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=6.5
Q ss_pred HHHHHhhccc
Q 010914 276 HLELLKRTNV 285 (497)
Q Consensus 276 qLdkL~ktNV 285 (497)
.+.+|+--|+
T Consensus 103 ~ik~lr~gn~ 112 (119)
T 3etw_A 103 KIQALRAGNL 112 (119)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHcCCc
Confidence 5666776665
No 216
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.08 E-value=3.4e+02 Score=23.26 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 206 EERKLEAAIEETEKQNAEVNAELKELE 232 (497)
Q Consensus 206 EE~~L~~eL~~LE~e~~~l~~El~~le 232 (497)
|...|.=+++-|....+++++.+..+.
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444443333333333333
No 217
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.66 E-value=46 Score=33.70 Aligned_cols=12 Identities=17% Similarity=0.662 Sum_probs=5.6
Q ss_pred ChHHHHHHHHHH
Q 010914 315 EWDEINAAWGQA 326 (497)
Q Consensus 315 ~W~EINAAwGQ~ 326 (497)
.|.|-=.+.|.+
T Consensus 120 ~W~~Yk~GFG~~ 131 (319)
T 1fzc_C 120 NWIQYKEGFGHL 131 (319)
T ss_dssp CHHHHHHCEEEE
T ss_pred CHHHHhHhhCCc
Confidence 455544444443
No 218
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.65 E-value=2.4e+02 Score=21.22 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 194 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 194 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~l 231 (497)
.++..++..|.+.-.+|...|.+.-.+...+.+++.+|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 219
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.49 E-value=40 Score=22.13 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010914 217 TEKQNAEVNAELKELELKS 235 (497)
Q Consensus 217 LE~e~~~l~~El~~le~e~ 235 (497)
||=|...+++.|..|+.++
T Consensus 5 lefendaleqkiaalkqki 23 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 220
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=23.44 E-value=4.1e+02 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010914 209 KLEAAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 209 ~L~~eL~~LE~e~~~l~~El~~l 231 (497)
+|-+++..+-+...+|+++|..+
T Consensus 63 ~Lhaev~~v~~~F~~Ld~~L~~l 85 (140)
T 1xaw_A 63 SLQSVLDEINKELSRLDKELDDY 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444444444444444443
No 221
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.37 E-value=3.4e+02 Score=22.95 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 010914 226 AELKELELKSKRF 238 (497)
Q Consensus 226 ~El~~le~e~~~L 238 (497)
.||++|+.++..|
T Consensus 54 ~EI~~L~~eI~~L 66 (96)
T 1t3j_A 54 EEIARLSKEIDQL 66 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 222
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.25 E-value=3.7e+02 Score=23.38 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 191 LSEADFLKEKLKIEEEERKLEAAIEETEKQ 220 (497)
Q Consensus 191 ~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e 220 (497)
++-++|++|+...|.+.-...+.|++.++.
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~ 51 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAEKQ 51 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666555555554444444444443
No 223
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.07 E-value=5e+02 Score=24.76 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 175 AYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 239 (497)
Q Consensus 175 ~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~ 239 (497)
..+..|.+|..- .+...+-.+.+++|+.+-.....+-.+|++..+.+.+|+.+|+...+.|+
T Consensus 10 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 10 EHEDILNKLLDP---ELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 344556655421 12222223345667777777777888888888888888888877766663
No 224
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=22.76 E-value=1.6e+02 Score=23.55 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 271 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 271 (497)
.+..|..+..+++.+|..++.....-. +...++.+...+.|+...+..++.
T Consensus 18 ~f~~L~~eH~~LD~~I~~le~~~~~~~--------~l~~LKk~KL~LKDeI~~lL~~~~ 68 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAEQQNASDA--------EVSHMKKQKLKLKDEIHSMIIEYR 68 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSCHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChH--------HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555555555555555543221111 333455555555555555544433
No 225
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.66 E-value=3.6e+02 Score=25.00 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 244 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 244 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
.+=+..+.++.....++.++..++..++....+.++++.
T Consensus 53 ~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 53 IIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555566666666666665555543
No 226
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.43 E-value=3.3e+02 Score=23.67 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010914 218 EKQNAEVNAELKELEL 233 (497)
Q Consensus 218 E~e~~~l~~El~~le~ 233 (497)
+...+++++++.+|+.
T Consensus 87 ~~~~~~l~~~i~~L~~ 102 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQE 102 (142)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444333
No 227
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.35 E-value=1.6e+02 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 196 FLKEKLKIEEEERKLEAAIEETEKQNAEVN 225 (497)
Q Consensus 196 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 225 (497)
+......|+.|-..|..++..|++|...+.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666666555555443
No 228
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=21.44 E-value=4.1e+02 Score=23.26 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=3.3
Q ss_pred HHHHhhcc
Q 010914 277 LELLKRTN 284 (497)
Q Consensus 277 LdkL~ktN 284 (497)
+..++--|
T Consensus 104 Iq~~~~~~ 111 (119)
T 2avr_X 104 IQALRAGN 111 (119)
T ss_dssp HHHHHHTT
T ss_pred HHHHHccc
Confidence 34444444
No 229
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=21.40 E-value=5e+02 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 226 AELKELELKSKRFKELEERY 245 (497)
Q Consensus 226 ~El~~le~e~~~L~~eE~~~ 245 (497)
.....++.....+..++.+|
T Consensus 90 ~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 90 EQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666555
No 230
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=21.20 E-value=6.9e+02 Score=25.75 Aligned_cols=124 Identities=11% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKL----------------EAAIEETEKQNA 222 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L----------------~~eL~~LE~e~~ 222 (497)
+..+..+..+..++.+.+..-+..+..-.-..-..+.+.++..+|...+... ..++.+++....
T Consensus 195 ~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L~~~~~~~~r~~~~~~~~~~~~~d~~~l~~i~~rl~ 274 (517)
T 4ad8_A 195 LERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRLSNLHESSKHPTSLVPRGSGSAADPEALDRVEARLS 274 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHC-------------------CTTHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhccCCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010914 223 EVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 282 (497)
Q Consensus 223 ~l~~El~~le---~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 282 (497)
.+..-.++.. .+.....+.=..-...+......+...+.+..++...+......|...|+
T Consensus 275 ~l~~l~~k~~~~~~~l~~~~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~R~ 337 (517)
T 4ad8_A 275 ALSKLKNKYGPTLEDVVEFGAQAAEELAGLEEDERDAGSLQADVDALHAELLKVGQALDAARE 337 (517)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 231
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.01 E-value=96 Score=24.70 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 210 LEAAIEETEKQNAEVNAELKELELK 234 (497)
Q Consensus 210 L~~eL~~LE~e~~~l~~El~~le~e 234 (497)
|..+...++.+.+++.++...|+.+
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 232
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.99 E-value=2.5e+02 Score=28.41 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecC
Q 010914 259 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG 296 (497)
Q Consensus 259 ~~ee~~sl~~q~~~~~~qLdkL~ktNV~Nd~F~I~hdG 296 (497)
++++.++.+.++..+..-++.=-..-++..++.|.+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~g~~~~lAgal~~~~~~ 323 (426)
T 1lrz_A 286 LQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPF 323 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEEEEECC
Confidence 34444444444444432222211123677778777654
No 233
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.77 E-value=2.5e+02 Score=28.69 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 214 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 274 (497)
Q Consensus 214 L~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 274 (497)
+..+++|.+.++.++++++.+. ...|..|=..|+.++.++.. |+-|++.++-..
T Consensus 5 ~~~~~~e~~~~~~~~~~vq~kA---~~~E~~Yn~~~dKmeqE~lr----RRkLENSIdElK 58 (333)
T 4etp_B 5 IAALEKEIAALEKEIAALEKEI---SKQEKFYNDTYNTVCKELLR----SRRLENSIIEQK 58 (333)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHhc
Confidence 3344444444445555555443 23344565666666555433 445555554433
No 234
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=20.60 E-value=5.2e+02 Score=24.10 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010914 159 SDKLDKEVDDVTRDIEAYEA 178 (497)
Q Consensus 159 le~Ld~qle~~~~E~d~Y~~ 178 (497)
.+.|+++-++...|+..|..
T Consensus 28 ~e~L~~E~e~k~eEKkkiLa 47 (180)
T 1j1e_C 28 KQELEREAEERRGEKGRALS 47 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665544
No 235
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.59 E-value=5.9e+02 Score=24.67 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLE------AAIEETEKQNAEVNAELKEL 231 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~------~eL~~LE~e~~~l~~El~~l 231 (497)
|+.++-...+.--.-.+.|+..||.+..... +-........+|..+..+|. ..|..||+|....+++..-.
T Consensus 74 Ll~e~ge~e~~~a~~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lva 150 (234)
T 3plt_A 74 LIYELGELQDQFIDKYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHH
Confidence 3444444444444556678888888764211 01112222233333333333 34556666666666655555
Q ss_pred HHHHHHHH
Q 010914 232 ELKSKRFK 239 (497)
Q Consensus 232 e~e~~~L~ 239 (497)
|+++.++.
T Consensus 151 EAqL~n~k 158 (234)
T 3plt_A 151 EAQLSNIT 158 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 55544443
No 236
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.58 E-value=2.6e+02 Score=20.58 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 010914 204 EEEERKL 210 (497)
Q Consensus 204 e~EE~~L 210 (497)
|..|..|
T Consensus 23 erdeqnl 29 (52)
T 3he5_B 23 ERDEQNL 29 (52)
T ss_dssp HHHHHHH
T ss_pred hhhHhhH
Confidence 3333333
No 237
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.52 E-value=3.1e+02 Score=22.18 Aligned_cols=60 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 213 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 275 (497)
Q Consensus 213 eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 275 (497)
+|+.|..+++.++..+.+++. .+..+-+.+-.....++.++.....+.......|+...+
T Consensus 4 eie~L~~q~~~Le~~l~e~E~---~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLED---SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp --------CTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 238
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.24 E-value=2.5e+02 Score=20.34 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010914 214 IEETEKQNAEVNAELKELE 232 (497)
Q Consensus 214 L~~LE~e~~~l~~El~~le 232 (497)
|..+|.|...++..+..++
T Consensus 22 laaleselqalekklaalk 40 (48)
T 1g6u_A 22 LAALESELQALEKKLAALK 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 239
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.14 E-value=4.8e+02 Score=23.47 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010914 195 DFLKEKLKIEEEERKLEAAIEETEK 219 (497)
Q Consensus 195 ~l~~e~~~Le~EE~~L~~eL~~LE~ 219 (497)
+|..+..+|+.+|+++..+|+.+-+
T Consensus 25 ~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 25 VVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777765543
No 240
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.02 E-value=7.6e+02 Score=25.75 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010914 158 LSDKLDKEVDDVTRDIEAYEACLQRLEGE 186 (497)
Q Consensus 158 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 186 (497)
|-+-|-++-..+.++.+.-+.-|+.++..
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~ 53 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENK 53 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhh
Confidence 44555556666666666666666665543
Done!