BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010916
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 111/178 (62%), Gaps = 4/178 (2%)
Query: 266 IFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGG---LRLN 322
+FVR E R+++ + ++ GP+ TPY +G F FD FP YP+ PP V + G +R N
Sbjct: 100 VFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFN 159
Query: 323 PNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
PNLY+ GKVCLS+L TW G+ E W+ S+ LQVLVS+Q+LIL A+P+FNEPG+E+S
Sbjct: 160 PNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRG 219
Query: 383 GPEGEKMSRSYNDDAFIYSLK-TMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYM 439
P G + SR Y+ + ++K + +R P F++++ HF +I C+ ++
Sbjct: 220 TPSGTQSSREYDGNIRQATVKWAXLEQIRNPSPCFKEVIHKHFYLKRVEIXAQCEEWI 277
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
+++ ++K L+++ P + E + AV+ GP GTP+ DG F F YPN+
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP+V + S +PN+Y G +CL +L + + +D + +L SIQ+L+
Sbjct: 67 PPTVRFLSK--MFHPNVYADGSICLDIL---QNRWSPTYD-----VSSILTSIQSLLDEP 116
Query: 369 KP 370
P
Sbjct: 117 NP 118
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
+++ ++K ++++ P + + + A++IGP+ TPY DG F F YPN+
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP V + S +PN+Y G++CL +L + T +D + +L SIQ+L +
Sbjct: 67 PPHVKFLSE--MFHPNVYANGEICLDIL---QNRWTPTYD-----VASILTSIQSLFNDP 116
Query: 369 KP 370
P
Sbjct: 117 NP 118
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K++ ++K L+++ P I + + L AV+ GP TP+ G F F YPN+
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP+V + S +PN+Y G +CL +L + + ++D + +L SIQ+L+ +
Sbjct: 67 PPTVRFVS--RMFHPNIYADGSICLDIL---QNQWSPIYD-----VAAILTSIQSLLCDP 116
Query: 369 KP 370
P
Sbjct: 117 NP 118
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
A +++ E +L P I + +M+ LRA ++G + TPY G+F + I P YP
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 308 EPPSVYYYSGGLRLNPNLYDCGKVCLSLL-----GTWTGKSTEMWDKNKSTMLQVLVSIQ 362
EPP + + + +PN+ G++CL +L G W + + VL SIQ
Sbjct: 66 EPPQIRFLTPI--YHPNIDSAGRICLDVLKLPPKGAW---------RPSLNIATVLTSIQ 114
Query: 363 ALILNAKP 370
L+ P
Sbjct: 115 LLMSEPNP 122
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
+++ ++K L+++ P + E + A++ GP TP+ DG F F YPN+
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP+V + S +PN+Y G +CL +L + + +D + +L SIQ+L+
Sbjct: 67 PPTVKFISK--MFHPNVYADGSICLDIL---QNRWSPTYD-----VAAILTSIQSLLDEP 116
Query: 369 KP 370
P
Sbjct: 117 NP 118
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
+++ ++K L+++ P + E + A++ GP TP+ DG F F YPN+
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP+V + S +PN+Y G +CL +L + + +D + +L SIQ+L+
Sbjct: 70 PPTVKFISK--MFHPNVYADGSICLDIL---QNRWSPTYD-----VAAILTSIQSLLDEP 119
Query: 369 KP 370
P
Sbjct: 120 NP 121
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 248 AKKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYP 306
AK+I +E + ++ + I + V E+ + L+ +GP GTPY G FV D P YP
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 307 NEPPSVYYYSGGLRLNPNLYDC-GKVCLSLL-GTWTGKSTEMWDKNKSTMLQVLVSIQAL 364
+PP + + + +PN+ G +CL +L W+ T+ L+S+QAL
Sbjct: 64 FKPPKMQFDTK--VYHPNISSVTGAICLDILRNAWSP---------VITLKSALISLQAL 112
Query: 365 ILNAKPFFNEP 375
+ + +P N+P
Sbjct: 113 LQSPEP--NDP 121
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
++I +E + L P I ++ GP GTPY G + + P YP E
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALI 365
PP V + + +PN+ G++CL +L + W S LQ VL+SIQAL+
Sbjct: 64 PPKVRFLTK--IYHPNIDKLGRICLDIL-------KDKW----SPALQIRTVLLSIQALL 110
Query: 366 LNAKP 370
+ +P
Sbjct: 111 SSPEP 115
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
++I +E + L P I ++ GP GTPY G + + P YP E
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALI 365
PP V + + +PN+ G++CL +L + W S LQ VL+SIQAL+
Sbjct: 64 PPKVRFLTK--IYHPNIDKLGRICLDIL-------KDKW----SPALQIRTVLLSIQALL 110
Query: 366 LNAKP 370
+ +P
Sbjct: 111 SSPEP 115
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E + L+++ P + +A ++GPS +PY G+F FP YP +
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP V + + +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 69 PPKVAFTTK--IYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLSICSLLCDP 118
Query: 369 KP 370
P
Sbjct: 119 NP 120
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L K+ P M +A ++GP +PY G+F + FP YP +
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP V + + +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 84 PPKVNFTTK--IYHPNINSQGAICLDIL-------KDQWSP-ALTISKVLLSISSLLTDP 133
Query: 369 KP 370
P
Sbjct: 134 NP 135
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 10/123 (8%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
+K+I +E LE++ P + + +A ++GP+ +PY G+F FP YP
Sbjct: 4 SKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPF 63
Query: 308 EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
+PP + + + +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 64 KPPKISFTTK--IYHPNINANGNICLDIL-------KDQWSP-ALTLSKVLLSICSLLTD 113
Query: 368 AKP 370
A P
Sbjct: 114 ANP 116
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 16/131 (12%)
Query: 248 AKKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYP 306
AK+I +E + ++ + I + V E+ + L+ +GP GTPY G FV D P YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 307 NEPPSVYYYSGGLRLNPNLYDC-GKVCLSLL-GTWTGKSTEMWDKNKSTMLQVLVSIQAL 364
+PP + + + +PN+ G +CL +L W+ T+ L+S+QAL
Sbjct: 63 FKPPKMQFDTK--VYHPNISSVTGAICLDILKNAWSP---------VITLKSALISLQAL 111
Query: 365 ILNAKPFFNEP 375
+ + +P N+P
Sbjct: 112 LQSPEP--NDP 120
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 275 MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLS 334
+ + + GP +PY DG+F + P YP E P V + + +PN+ G++CL
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI--YHPNIDRLGRICLD 89
Query: 335 LLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALILNAKPFFNEP 375
+L T N S LQ VL+SIQAL+ A P N+P
Sbjct: 90 VLKT-----------NWSPALQIRTVLLSIQALL--ASPNPNDP 120
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 24/163 (14%)
Query: 249 KKIQEEWKILEKNLPDTIF---VRVCEARMELLR--AVMIGPSGTPYHDGLFVFDCIFPP 303
+++QEE K K+ P + V+ + M+L + A + G GT + G++ +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 304 SYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQA 363
YP++PP V + +G +PN+Y G +CLS+L + W + T+ Q+++ +Q
Sbjct: 69 EYPSKPPKVKFPAG--FYHPNVYPSGTICLSILN-----EDQDW-RPAITLKQIVLGVQD 120
Query: 364 LILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMM 406
L+ + P N P E ++ RS++ + Y K ++
Sbjct: 121 LLDSPNP--NSPAQEPAW---------RSFSRNKAEYDKKVLL 152
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 241 EKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCI 300
E P + + + +E L + PD I V E + L+ + GP GTPY GLF +
Sbjct: 8 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLL 67
Query: 301 FPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLG-TWTGKSTEMWDKNKSTMLQVLV 359
+P PP Y+ + +PN+ G++C+++L WT + + VL+
Sbjct: 68 LGKDFPASPPKGYFLTK--IFHPNVGANGEICVNVLKRDWTA---------ELGIRHVLL 116
Query: 360 SIQALILNAKP 370
+I+ L+++ P
Sbjct: 117 TIKCLLIHPNP 127
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 24/163 (14%)
Query: 249 KKIQEEWKILEKNLPDTIF---VRVCEARMELLR--AVMIGPSGTPYHDGLFVFDCIFPP 303
+++QEE K K+ P + V+ + M+L + A + G GT + G++ +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 304 SYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQA 363
YP++PP V + +G +PN+Y G +CLS+L + W + T+ Q+++ +Q
Sbjct: 67 EYPSKPPKVKFPAG--FYHPNVYPSGTICLSILN-----EDQDW-RPAITLKQIVLGVQD 118
Query: 364 LILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMM 406
L+ + P N P E ++ RS++ + Y K ++
Sbjct: 119 LLDSPNP--NSPAQEPAW---------RSFSRNKAEYDKKVLL 150
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 245 KNWAKKIQEEWKILEKNLPDTIFVRV-CEARMELLRAVMIGPSGTPYHDGLFVFDCIFPP 303
K K++ +E + L K+ P I E + + ++ GP TPY DG+F FP
Sbjct: 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62
Query: 304 SYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQA 363
YP PP + + L+PN+Y G+VC+S+L + G M++ + V S++
Sbjct: 63 DYPLSPPKLTFTPS--ILHPNIYPNGEVCISILHS-PGDDPNMYELAEERWSPV-QSVEK 118
Query: 364 LILNAKPFFNEPGFE 378
++L+ +EP E
Sbjct: 119 ILLSVMSMLSEPNIE 133
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + G + T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRSQWGPAL--------TISKVLLSICSLLCD 114
Query: 368 AKP 370
P
Sbjct: 115 PNP 117
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I E L K+ P + + +A ++GP+ +PY G+F FP YP +
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 64 PPKVNFTT---RIYHPNINSNGSICLDIL-------RDQWSP-ALTISKVLLSISSLLTD 112
Query: 368 AKP 370
P
Sbjct: 113 PNP 115
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 279 RAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNL-YDCGKVCLSLLG 337
R + GP GTPY G F D + PP YP PP + + + +PN+ G +CL +L
Sbjct: 78 RGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTK--IWHPNISSQTGAICLDIL- 134
Query: 338 TWTGKSTEMWDKNKSTMLQVLVSIQALILNAKP 370
W T+ L+SIQA++ + P
Sbjct: 135 ------KHEWSP-ALTIRTALLSIQAMLADPVP 160
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
I+E K++ +P I + + + + GP +PY DG+F + P YP E P
Sbjct: 11 IKETEKLVSDPVPG-ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP 69
Query: 311 SVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALILN 367
V + + +PN+ G++CL +L T N S LQ VL+SIQAL+ +
Sbjct: 70 KVRFLTK--IYHPNIDRLGRICLDVLKT-----------NWSPALQIRTVLLSIQALLAS 116
Query: 368 AKPFFNEP 375
P N+P
Sbjct: 117 PNP--NDP 122
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 250 KIQEEWKILEKNLPDTIFVRVCEAR---MELL--RAVMIGPSGTPYHDGLFVFDCIFPPS 304
++QEE K ++ P + + C++ ++L+ + + G T + GL+ FP
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 305 YPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQAL 364
YP PP + +PN+Y G VCLS+L E W K T+ Q+L+ IQ L
Sbjct: 74 YPTRPPKCRFTPP--LFHPNVYPSGTVCLSILN-----EEEGW-KPAITIKQILLGIQDL 125
Query: 365 I 365
+
Sbjct: 126 L 126
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 69 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 117
Query: 368 AKP 370
P
Sbjct: 118 PNP 120
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 114
Query: 368 AKP 370
P
Sbjct: 115 PNP 117
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 114
Query: 368 AKP 370
P
Sbjct: 115 PNP 117
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
++IQ+E + ++++ P + A + GP +PY GLF D FP YP +
Sbjct: 7 RRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
P V + + +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 67 APRVTFMTKV--YHPNINKNGVICLDIL-------KDQWSP-ALTLSRVLLSISSLLTDP 116
Query: 369 KP 370
P
Sbjct: 117 NP 118
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E + L ++ P + +A ++GP +PY G+F FP YP +
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 67 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 115
Query: 368 AKP 370
P
Sbjct: 116 PNP 118
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 74 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 122
Query: 368 AKP 370
P
Sbjct: 123 PNP 125
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 82 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 130
Query: 368 AKP 370
P
Sbjct: 131 PNP 133
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 64 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 112
Query: 368 AKP 370
P
Sbjct: 113 PNP 115
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 114
Query: 368 AKP 370
P
Sbjct: 115 PNP 117
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 74 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 122
Query: 368 AKP 370
P
Sbjct: 123 PNP 125
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 63 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 111
Query: 368 AKP 370
P
Sbjct: 112 PNP 114
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 12 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 72 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 120
Query: 368 AKP 370
P
Sbjct: 121 PNP 123
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
I+E K++ +P I + + + + GP +PY DG+F + P YP E P
Sbjct: 9 IKETEKLVSDPVP-GITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP 67
Query: 311 SVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALILN 367
V + + +PN+ G++ L +L T N S LQ VL+SIQAL+
Sbjct: 68 KVRFLTKI--YHPNIDRLGRISLDVLKT-----------NWSPALQIRTVLLSIQALL-- 112
Query: 368 AKPFFNEP 375
A P N+P
Sbjct: 113 ASPNPNDP 120
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
AK+IQ+E + + P + R+ ++GP G+ Y G+F D F P YP
Sbjct: 50 AKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 308 EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
+PP V + + N N G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 110 KPPKVTFRTRIYHCNIN--SQGVICLDIL-------KDNWSP-ALTISKVLLSICSLLTD 159
Query: 368 AKP 370
P
Sbjct: 160 CNP 162
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A +GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 114
Query: 368 AKP 370
P
Sbjct: 115 PNP 117
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCL-SLLGTWTGKSTEMWDKNKSTMLQVLVSIQALIL 366
PP V + + R+ +PN+ G +CL +L W+ T+ +VL+SI +L+
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSICLDALRSQWSP---------ALTISKVLLSICSLLC 113
Query: 367 NAKP 370
+ P
Sbjct: 114 DPNP 117
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
AK+IQ+E + + P + R+ ++GP G+ Y G+F D F P YP
Sbjct: 5 AKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 308 EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
+PP V + + N N G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 65 KPPKVTFRTRIYHCNIN--SQGVICLDIL-------KDNWSP-ALTISKVLLSICSLLTD 114
Query: 368 AKP 370
P
Sbjct: 115 CNP 117
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G VCLS+L +
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EE 102
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 103 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 138
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G VCLS+L +
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EE 101
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 102 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 137
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G VCLS+L +
Sbjct: 48 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EE 100
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 101 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 136
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G VCLS+L +
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EE 99
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 100 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 135
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G VCLS+L +
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EE 101
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 102 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 137
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G VCLS+L +
Sbjct: 52 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EE 104
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 105 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 140
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E L+++ P + +A ++GP + Y G+F FP YP +
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP + + + +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 70 PPKIAFTTK--IYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLSICSLLCDP 119
Query: 369 KP 370
P
Sbjct: 120 NP 121
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E L+++ P + +A ++GP + Y G+F FP YP +
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP + + + +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 66 PPKIAFTTK--IYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLSICSLLCDP 115
Query: 369 KP 370
P
Sbjct: 116 NP 117
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G VCLS+L +
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EE 102
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P P ++Y
Sbjct: 103 DKDW-RPAITIKQILLGIQELL--NEPNIQSPAQAEAYT 138
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G VCLS+L +
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVCLSIL-----EE 102
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378
+ W + T+ Q+L+ IQ L+ NEP +
Sbjct: 103 DKDW-RPAITIKQILLGIQELL-------NEPNIQ 129
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E L+++ P + +A ++GP + Y G+F FP YP +
Sbjct: 22 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP + + + +PN+ G +CL +L + W T+ +VL+SI +L+ +
Sbjct: 82 PPKIAFTTK--IYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLSICSLLCDP 131
Query: 369 KP 370
P
Sbjct: 132 NP 133
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G + L +L + W T+ +VL+SI +L+ +
Sbjct: 66 PPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSP-ALTISKVLLSICSLLCD 114
Query: 368 AKP 370
P
Sbjct: 115 PNP 117
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 282 MIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTG 341
+I P PY G F + FP YP +PP + + + +PN+ + G+VCL ++
Sbjct: 38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKI--YHPNIDEKGQVCLPVI----- 90
Query: 342 KSTEMWDKNKSTMLQVLVSIQALILNAKP 370
S E W K + QV+ S+ AL+ + +P
Sbjct: 91 -SAENW-KPATKTDQVIQSLIALVNDPQP 117
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 268 VRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYD 327
++V EA + L +I P PY G F + FP YP +PP + + + +PN+ +
Sbjct: 27 IQVDEANL-LTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKI--YHPNIDE 83
Query: 328 CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKP 370
G+VCL ++ S E W K + QV+ S+ AL+ + +P
Sbjct: 84 KGQVCLPVI------SAENW-KPATKTDQVIQSLIALVNDPQP 119
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 250 KIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEP 309
++Q+E K +E I + ++ + GP GTPY G F P YP P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 310 PSVYYYSGGLRLNPNL-YDCGKVCLSLL-GTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
P + + + +PN+ G +CL +L W+ T+ L+SIQAL+ +
Sbjct: 87 PKIKFVTK--IWHPNISSQTGAICLDVLKNEWSP---------ALTIRTALLSIQALLSD 135
Query: 368 AKP 370
+P
Sbjct: 136 PQP 138
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G + L +L + W T+ +VL+SI +L+ +
Sbjct: 67 PPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSP-ALTISKVLLSICSLLCD 115
Query: 368 AKP 370
P
Sbjct: 116 PNP 118
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 219 KQFDTVDDFSDHHYNRMGFLGEEKPPKNWA-KKIQEEWKIL---EKNLPDTIFVRVCEAR 274
+ D+ D +D M +G E N A ++I+ E+K + E+ + I V + +
Sbjct: 29 QHMDSPDLGTDDDDKAMADIGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDEN 88
Query: 275 MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC-GKVCL 333
LR + GP TPY G + + P +YP PP V + + +PN+ G +CL
Sbjct: 89 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--IWHPNISSVTGAICL 146
Query: 334 SLL 336
+L
Sbjct: 147 DIL 149
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +P +Y G VCLS+L +
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPQVYPSGTVCLSIL-----EE 102
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 103 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 138
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G + L +L + W T+ +VL+SI +L+ +
Sbjct: 64 PPKVAFTT---RIYHPNINSNGSISLDILRS-------QWSP-ALTISKVLLSICSLLCD 112
Query: 368 AKP 370
P
Sbjct: 113 PNP 115
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
I+E ++L + +P I E+ V+ GP +P+ G F + P YP P
Sbjct: 11 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 69
Query: 311 SVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALILN 367
V + + +PN+ G++CL +L + W S LQ VL+SIQAL+
Sbjct: 70 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKW----SPALQIRTVLLSIQALLSA 116
Query: 368 AKP 370
P
Sbjct: 117 PNP 119
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
N +IQ+E KN P + V + + + +G T Y + ++ IFP +Y
Sbjct: 20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNY 79
Query: 306 PNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLG 337
P +PP VY+ + + ++Y G +CLS+LG
Sbjct: 80 PLKPPIVYFLQKPPK-HTHVYSNGDICLSVLG 110
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
I+E ++L + +P I E+ V+ GP +P+ G F + P YP P
Sbjct: 9 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 67
Query: 311 SVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALILN 367
V + + +PN+ G++CL +L + W S LQ VL+SIQAL+
Sbjct: 68 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKW----SPALQIRTVLLSIQALLSA 114
Query: 368 AKP 370
P
Sbjct: 115 PNP 117
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
I+E ++L + +P I E+ V+ GP +P+ G F + P YP P
Sbjct: 7 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 65
Query: 311 SVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALILN 367
V + + +PN+ G++CL +L + W S LQ VL+SIQAL+
Sbjct: 66 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKW----SPALQIRTVLLSIQALLSA 112
Query: 368 AKP 370
P
Sbjct: 113 PNP 115
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +PN+ G + L +L + W T+ +VL+SI +L+ +
Sbjct: 82 PPKVAFTT---RIYHPNINSNGSIXLDILRS-------QWSP-ALTISKVLLSICSLLCD 130
Query: 368 AKP 370
P
Sbjct: 131 PNP 133
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
+ I+E ++L + +P I E+ V+ GP +P+ G F + P YP
Sbjct: 10 RIIKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALI 365
P V + + +PN+ G++CL +L + W S LQ VL+SIQAL+
Sbjct: 69 APKVRFMTK--IYHPNVDKLGRICLDIL-------KDKW----SPALQIRTVLLSIQALL 115
Query: 366 LNAKP 370
P
Sbjct: 116 SAPNP 120
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
+K+I +E L ++ P M +A ++GP+ +PY G+F FP YP
Sbjct: 2 SKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 308 EPPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALIL 366
+PP V + + R+ +PN+ G + L +L + + + + +VL+SI +L+
Sbjct: 62 KPPKVAFTT---RIYHPNINSNGSISLDILRSQWSPALK--------ISKVLLSICSLLC 110
Query: 367 NAKP 370
+ P
Sbjct: 111 DPNP 114
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+ G VCLS+L +
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVAPSGTVCLSIL-----EE 102
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 103 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 138
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFV-RVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
K++ E+K L N P+ I + E A+++GP T + G+F FP YP
Sbjct: 10 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 69
Query: 308 EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGT------WTGKSTEMWDKNKSTMLQVLVSI 361
PP + + +PN+Y G+VC+S+L S E W +S ++L+S+
Sbjct: 70 SPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE-KILLSV 126
Query: 362 QALI 365
+++
Sbjct: 127 VSML 130
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
I+E ++L + +P I E+ V+ GP +P+ G F + P YP P
Sbjct: 14 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 72
Query: 311 SVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALILN 367
V + + +PN+ G++CL +L + W S LQ VL+SIQAL+
Sbjct: 73 KVRFMTK--IYHPNVDKLGRICLDIL-------KDKW----SPALQIRTVLLSIQALLSA 119
Query: 368 AKP 370
P
Sbjct: 120 PNP 122
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFV-RVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
K++ E+K L N P+ I + E A+++GP T + G+F FP YP
Sbjct: 9 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 68
Query: 308 EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGT------WTGKSTEMWDKNKSTMLQVLVSI 361
PP + + +PN+Y G+VC+S+L S E W +S ++L+S+
Sbjct: 69 SPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE-KILLSV 125
Query: 362 QALI 365
+++
Sbjct: 126 VSML 129
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
I+E K++ +P I + + + + GP +PY DG+F + P YP E P
Sbjct: 9 IKETEKLVSDPVPG-ITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP 67
Query: 311 SVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQ---VLVSIQALILN 367
V + + +P + G++ L +L T N S LQ VL+SIQAL+ +
Sbjct: 68 KVRFLTK--IYHPAIDRLGRISLDVLKT-----------NWSPALQIRTVLLSIQALLAS 114
Query: 368 AKPFFNEP 375
P N+P
Sbjct: 115 PNP--NDP 120
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 280 AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTW 339
++IGP T Y G F FP YP +PP + + S +PN+ G VC+S+L
Sbjct: 38 VLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISE--IWHPNIDKEGNVCISILHD- 94
Query: 340 TGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSR 391
G +++ + L V +++ ++L+ +P FE S + KM R
Sbjct: 95 PGDDKWGYERPEERWLPVH-TVETILLSVISMLTDPNFE-SPANVDAAKMQR 144
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
K++ E+K L N P+ I + E A+++GP T + G+F FP YP
Sbjct: 12 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 71
Query: 308 EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGT------WTGKSTEMWDKNKSTMLQVLVSI 361
PP + + +PN+Y G+VC+S+L S E W +S ++L+S+
Sbjct: 72 SPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE-KILLSV 128
Query: 362 QALI 365
+++
Sbjct: 129 VSML 132
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFV-RVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
K++ E+K L N P+ I + E A+++GP T + G+F FP YP
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 308 EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGT------WTGKSTEMWDKNKSTMLQVLVSI 361
PP + + +PN+Y G+VC+S+L S E W +S ++L+S+
Sbjct: 66 SPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE-KILLSV 122
Query: 362 QALI 365
+++
Sbjct: 123 VSML 126
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G V LS+L +
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVSLSIL-----EE 99
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 100 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 135
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G GTP+ GLF +F YP+ PP + +PN+Y G V LS+L +
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP--LFHPNVYPSGTVXLSIL-----EE 99
Query: 344 TEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYV 382
+ W + T+ Q+L+ IQ L+ +P +P ++Y
Sbjct: 100 DKDW-RPAITIKQILLGIQELL--NEPNIQDPAQAEAYT 135
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 249 KKIQEEWKIL---EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
++I+ E+K + E+ + I V + + LR + GP TPY G + + P +Y
Sbjct: 24 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 83
Query: 306 PNEPPSVYYYSGGLRLNPNLYDC-GKVCLSLL 336
P PP V + + +PN+ G +CL +L
Sbjct: 84 PFNPPKVRFITK--IWHPNISSVTGAICLDIL 113
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E L+++ P + +A ++GP + Y G+F FP YP +
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368
PP + + + +PN+ G + L +L + W T+ +VL+SI +L+ +
Sbjct: 70 PPKIAFTTK--IYHPNINSNGSIKLDILRS-------QWSP-ALTVSKVLLSICSLLCDP 119
Query: 369 KP 370
P
Sbjct: 120 NP 121
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 282 MIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTG 341
++ P PYH F FPP YP +PP + + + +PN+ + G++CL ++
Sbjct: 37 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI--YHPNVDENGQICLPII----- 89
Query: 342 KSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEP 375
S+E W T QVL ++ L+ +P EP
Sbjct: 90 -SSENWKPCTKTC-QVLEALNVLV--NRPNIREP 119
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 309 PPSVYYYSGGLRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
PP V + + R+ +P + G + L +L + W T+ +VL+SI +L+ +
Sbjct: 64 PPKVAFTT---RIYHPAINSNGSISLDILRS-------QWSP-ALTISKVLLSICSLLCD 112
Query: 368 AKP 370
P
Sbjct: 113 PNP 115
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 282 MIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTG 341
++ P PYH F FPP YP +PP + + + +PN+ + G++CL ++
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI--YHPNVDENGQICLPII----- 92
Query: 342 KSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEP 375
S+E W T QVL ++ L+ +P EP
Sbjct: 93 -SSENWKPCTKTC-QVLEALNVLV--NRPNIREP 122
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 249 KKIQEEWKIL---EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
++I+ E+K + E+ + I V + + LR + GP TPY G + + P +Y
Sbjct: 11 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 70
Query: 306 PNEPPSVYYYSGGLRLNPNLYDC-GKVCLSLL 336
P PP V + + +PN+ G +CL +L
Sbjct: 71 PFNPPKVRFITK--IWHPNISSVTGAICLDIL 100
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 249 KKIQEEWKIL---EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
++I+ E+K + E+ + I V + + LR + GP TPY G + + P +Y
Sbjct: 9 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 68
Query: 306 PNEPPSVYYYSGGLRLNPNLYDC-GKVCLSLL 336
P PP V + + +PN+ G +CL +L
Sbjct: 69 PFNPPKVRFITK--IWHPNISSVTGAICLDIL 98
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 249 KKIQEEWKIL---EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
++I+ E+K + E+ + I V + + LR + GP TPY G + + P +Y
Sbjct: 8 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 67
Query: 306 PNEPPSVYYYSGGLRLNPNLYDC-GKVCLSLL 336
P PP V + + +PN+ G +CL +L
Sbjct: 68 PFNPPKVRFITK--IWHPNISSVTGAICLDIL 97
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 270 VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCG 329
V E + + GP T Y G F FP YP PP+ + + +PN+Y+ G
Sbjct: 32 VDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK--MWHPNIYETG 89
Query: 330 KVCLSLL-----GTWTGK-STEMWDKNKSTMLQVLVSIQALILNAKPFFNEP 375
VC+S+L +G+ +E W+ + +++ ++L+ NEP
Sbjct: 90 DVCISILHPPVDDPQSGELPSERWNPTQ--------NVRTILLSVISLLNEP 133
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 270 VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCG 329
V E + + GP T Y G F FP YP PP+ + + +PN+Y+ G
Sbjct: 29 VDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK--MWHPNIYETG 86
Query: 330 KVCLSLL-----GTWTGK-STEMWDKNKSTMLQVLVSIQALILNAKPFFNEP 375
VC+S+L +G+ +E W+ + +++ ++L+ NEP
Sbjct: 87 DVCISILHPPVDDPQSGELPSERWNPTQ--------NVRTILLSVISLLNEP 130
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
N +IQ+E N P + V + + +G T Y + ++ IFP Y
Sbjct: 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDY 65
Query: 306 PNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLG 337
P +PP VY+ + + ++Y G +CLSLLG
Sbjct: 66 PLKPPIVYFLQKPPK-HTHVYSNGDICLSLLG 96
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYD-CGKVCLSLLG-TWT 340
GP GTPY DG ++ P YP + PS+ + + L+PN+ + G VCL ++ TWT
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCN--RILHPNVDERSGSVCLDVINQTWT 102
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 235 MGFLGEEKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGL 294
M ++ P +++++++ ++K+ I + + V+ GP TPY G
Sbjct: 3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY 62
Query: 295 FVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSL 335
+ IFP +P +PPS+Y + R N ++CLS+
Sbjct: 63 YHGKLIFPREFPFKPPSIYMITPNGRFKCN----TRLCLSI 99
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 280 AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLL 336
++IGP T Y G+F FP YP PP + + + +PN+ G VC+S+L
Sbjct: 52 VLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE--IWHPNVDKNGDVCISIL 106
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 272 EARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC-GK 330
E + A++ GPS TPY + F P SYP PP + + + L+ N+ G+
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI-LHSNVKSATGE 102
Query: 331 VCLSLLGTWTGKSTEMWD 348
+CL++L + T +WD
Sbjct: 103 ICLNILK--PEEWTPVWD 118
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 272 EARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC-GK 330
E + A++ GPS TPY + F P SYP PP + + + L+ N+ G+
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI-LHCNVKSATGE 102
Query: 331 VCLSLLGTWTGKSTEMWD 348
+CL++L + T +WD
Sbjct: 103 ICLNILK--PEEWTPVWD 118
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 272 EARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC-GK 330
E + A++ GPS TPY + F P SYP PP + + + L+ N+ G+
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI-LHCNVKSATGE 102
Query: 331 VCLSLLGTWTGKSTEMWD 348
+CL++L + T +WD
Sbjct: 103 ICLNILK--PEEWTPVWD 118
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 264 DTIFVRVCEARMEL-----LRAVMI---GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYY 315
DT +++ E++ E+ L ++ GP GTPY G++ P YP + PS+ +
Sbjct: 31 DTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFM 90
Query: 316 SGGLRLNPNLYDC-GKVCLSLLG-TWTG 341
+ +PN+ + G VCL ++ TWT
Sbjct: 91 NK--IFHPNIDEASGTVCLDVINQTWTA 116
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K + +E LE NLP T V + + + P Y G F F+ P +Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLL 336
PP V + +PN+ + G++CLSLL
Sbjct: 77 PPKVKCLTK--IWHPNITETGEICLSLL 102
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K + +E LE NLP T V + + + P Y G F F+ P +Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 309 PPSVYYYSGGLRLNPNLYDCGKVCLSLL 336
PP V + +PN+ + G++CLSLL
Sbjct: 77 PPKVKCLTK--IWHPNITETGEICLSLL 102
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
A +++ + I E NLP T + + L ++I P Y G FVF YP+
Sbjct: 6 AAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPH 65
Query: 308 EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367
+PP V + +PN+ G VCL++L E W K T+ ++ +Q L L
Sbjct: 66 DPPKVKCET--XVYHPNIDLEGNVCLNIL-------REDW-KPVLTINSIIYGLQYLFLE 115
Query: 368 AKP 370
P
Sbjct: 116 PNP 118
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAV--MIGPSGTPYHDGLFVFDCIFPPSYP 306
K++Q+E L+ + P + + + + + + M G GT Y F F YP
Sbjct: 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 307 NEPPSVYYYSGGLRLNPNLYDCGKVCLSLL 336
+ P V + + ++P++Y G +CLS+L
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGHICLSIL 114
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 280 AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLG-T 338
A + GP T Y + FP YP +PP V + + +PN+ G +CL +L
Sbjct: 43 ATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC--WHPNVDQSGNICLDILKEN 100
Query: 339 WTGKSTEMWDKNKSTMLQVLVSIQALI 365
WT + +L+S+Q+L+
Sbjct: 101 WTA---------SYDVRTILLSLQSLL 118
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC-GKVCLSLLG-TWT 340
GP+GT Y G++ P YP PS+ + + L+PN+ + G VCL ++ TWT
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK--LLHPNVDEASGSVCLDVINQTWT 93
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPS 304
K A +++ + I E NLP T + + L ++I P Y G FVF
Sbjct: 23 KASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQG 82
Query: 305 YPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQAL 364
YP++PP V + + +PN+ G V L++L E W K T+ ++ +Q L
Sbjct: 83 YPHDPPKVKCET--MVYHPNIDLEGNVALNIL-------REDW-KPVLTINSIIYGLQYL 132
Query: 365 ILNAKP 370
L P
Sbjct: 133 FLEPNP 138
>pdb|3Q6V|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3Q6V|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3SD9|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
pdb|3SD9|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
Length = 233
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVF 297
N+ ++ ++ LEK+LPDT+F + +RA+ +G + T DG+FV+
Sbjct: 109 NFTRQGNNKYPNLEKSLPDTVFPGDFNLQNGSIRAMYLGEAHT--KDGIFVY 158
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKS 343
G +GT Y D + FP YP P+V + + +PN+ G + L +L K
Sbjct: 68 GAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC--YHPNVDTQGNISLDILKE---KW 122
Query: 344 TEMWDKNKSTMLQVLVSIQALI 365
+ ++D + +L+SIQ+L+
Sbjct: 123 SALYD-----VRTILLSIQSLL 139
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 275 MELLR--AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYS 316
M L R ++IGP T Y + ++ P YP PPSV + +
Sbjct: 46 MTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVT 89
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 275 MELLR--AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYS 316
M L R ++IGP T Y + ++ P YP PPSV + +
Sbjct: 36 MTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVT 79
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 275 MELLR--AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYS 316
M L R ++IGP T Y + ++ P YP PPSV + +
Sbjct: 41 MTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVT 84
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 275 MELLR--AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYS 316
M L R ++IGP T Y + ++ P YP PPSV + +
Sbjct: 35 MTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVT 78
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRA------VMIGPSGTPYHDGLFVF 297
P A +I+ + + +LP T+ + V + R+ V++ P Y+ G F
Sbjct: 25 PNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINF 84
Query: 298 DCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLL 336
+ F YP EPP V +PN+ G VCL++L
Sbjct: 85 NLDFNEVYPIEPPKVVCLKK--IFHPNIDLKGNVCLNIL 121
>pdb|3MDO|A Chain A, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
pdb|3MDO|B Chain B, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
Length = 389
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 301 FPPSYPNEPPSVYYYSGGLRLNPNL----YDCGKVCLSLLGTWTGKSTEMWDKNKSTM 354
+P SY P YSGGL+L + D GK LS T+ + DK +S +
Sbjct: 225 YPESYDAAVPKELVYSGGLKLTDKIEELGIDAGKXVLSPTRTYAPVIKVLLDKLRSQI 282
>pdb|2H7R|A Chain A, L244a Mutant Of Cytochrome P450cam Complexed With
Imidazole
pdb|2H7S|A Chain A, L244a Mutant Of Cytochrome P450cam
pdb|2H7S|C Chain C, L244a Mutant Of Cytochrome P450cam
Length = 414
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|2A1M|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of Wild-Type
Cytochrome P450cam
pdb|2A1M|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of Wild-Type
Cytochrome P450cam
Length = 415
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2A1O|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
Cytochrome P450cam
pdb|2A1O|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
Cytochrome P450cam
Length = 415
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
Mutant Thr252ala
Length = 414
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|1IWJ|A Chain A, Putidaredoxin-Binding Stablilizes An Active Conformer Of
Cytochrome P450cam In Its Reduced State; Crystal
Structure Of Mutant(109k) Cytochrome P450cam
Length = 415
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1IWK|A Chain A, Putidaredoxin-Binding Stablilizes An Active Conformer Of
Cytochrome P450cam In Its Reduced State; Crystal
Structure Of Mutant(112k) Cytochrome P450cam
Length = 415
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1QMQ|A Chain A, Optical Detection Of Cytochrome P450 By Sensitizer-Linked
Substrates
pdb|1GJM|A Chain A, Covalent Attachment Of An Electroactive Sulphydryl Reagent
In The Active Site Of Cytochrome P450cam
pdb|1K2O|A Chain A, Cytochrome P450cam With Bound
Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-
Bipyridine)-C2-Adamantane Ruthenium (Ii)
pdb|1K2O|B Chain B, Cytochrome P450cam With Bound
Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-
Bipyridine)-C2-Adamantane Ruthenium (Ii)
pdb|1T87|A Chain A, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam (C334a)
pdb|1T87|B Chain B, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam (C334a)
pdb|1T88|A Chain A, Crystal Structure Of The Ferrous Cytochrome P450cam
(C334a)
pdb|1T88|B Chain B, Crystal Structure Of The Ferrous Cytochrome P450cam
(C334a)
pdb|3L61|A Chain A, Crystal Structure Of Substrate-Free P450cam At 200 Mm [k+]
pdb|3L62|A Chain A, Crystal Structure Of Substrate-Free P450cam At Low [k+]
pdb|3L63|A Chain A, Crystal Structure Of Camphor-Bound P450cam At Low [k+]
pdb|3OIA|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8gluetg-Bio
pdb|3OL5|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized With
A Tethered Substrate Analog 3oh-Adac1-C8-Dans
pdb|3P6M|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8-Dans
pdb|3P6N|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8-Dans
pdb|3P6O|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-Etg-Dans
pdb|3P6P|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog Adac1-C6-Bio
pdb|3P6Q|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-Etg-Boc
pdb|3P6R|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
3oh-Adac1-Etg-Boc
pdb|3P6S|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-C8-Dans
pdb|3P6T|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-C8-Dans
pdb|3P6U|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-C6-Dans
pdb|3P6V|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
3et-Adac1-Etg-Boc
pdb|3P6W|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-Etg-Boc
pdb|3P6X|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-C8-Dans
pdb|4G3R|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cam
pdb|4G3R|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cam
Length = 414
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|2A1N|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of D251n
Cytochrome P450cam
pdb|2A1N|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of D251n
Cytochrome P450cam
Length = 415
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|6CP4|A Chain A, P450cam D251n Mutant
Length = 414
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|1P2Y|A Chain A, Crystal Structure Of Cytochrome P450cam In Complex With
(S)- (-)-Nicotine
pdb|1P7R|A Chain A, Crystal Structure Of Reduced, Co-Exposed Complex Of
Cytochrome P450cam With (S)-(-)-Nicotine
Length = 420
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|1RE9|A Chain A, Crystal Structure Of Cytochrome P450-cam With A
Fluorescent Probe D-8-ad (adamantane-1-carboxylic
Acid-5-dimethylamino-
Naphthalene-1-sulfonylamino-octyl-amide)
pdb|1YRC|A Chain A, X-ray Crystal Structure Of Hydrogenated Cytochrome P450cam
pdb|1YRD|A Chain A, X-Ray Crystal Structure Of Perdeuterated Cytochrome
P450cam
pdb|2H7Q|A Chain A, Cytochrome P450cam Complexed With Imidazole
pdb|1CP4|A Chain A, Formation, Crystal Structure, And Rearrangement Of A
Cytochrome P450-Cam Iron-Phenyl Complex
pdb|1NOO|A Chain A, Cytochrome P450-Cam Complexed With 5-Exo-Hydroxycamphor
pdb|1PHA|A Chain A, Inhibitor-Induced Conformational Change In Cytochrome
P450- Cam
pdb|1PHB|A Chain A, Inhibitor-Induced Conformational Change In Cytochrome
P450- Cam
pdb|1PHC|A Chain A, Crystal Structure Of Substrate-free Pseudomonas Putida
Cytochrome P450
pdb|1PHD|A Chain A, Crystal Structures Of Metyrapone-And
Phenylimidazole-Inhibited Complexes Of Cytochrome
P450-Cam
pdb|1PHE|A Chain A, Crystal Structures Of Metyrapone-And
Phenylimidazole-Inhibited Complexes Of Cytochrome
P450-Cam
pdb|1PHF|A Chain A, Crystal Structures Of Metyrapone-And Phenylimidazole-
Inhibited Complexes Of Cytochrome P450-Cam
pdb|1PHG|A Chain A, Crystal Structures Of Metyrapone-And Phenylimidazole-
Inhibited Complexes Of Cytochrome P450-Cam
pdb|2CPP|A Chain A, High-Resolution Crystal Structure Of Cytochrome P450-Cam
pdb|3CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
Mutant Thr252ala
pdb|3CPP|A Chain A, Crystal Structure Of The Carbon
Monoxy-Substrate-Cytochrome P450-Cam Ternary Complex
pdb|4CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
Mutant Thr252ala
pdb|4CPP|A Chain A, Crystal Structures Of Cytochrome P450-Cam Complexed With
Camphane, Thiocamphor, And Adamantane: Factors
Controlling P450 Substrate Hydroxylation
pdb|5CP4|A Chain A, Cryogenic Structure Of P450cam
pdb|5CPP|A Chain A, The Structural Basis For Substrate-Induced Changes In
Redox Potential And Spin Equilibrium In Cytochrome
P-450(Cam)
pdb|6CPP|A Chain A, Crystal Structures Of Cytochrome P450-Cam Complexed With
Camphane, Thiocamphor, And Adamantane: Factors
Controlling P450 Substrate Hydroxylation
pdb|7CPP|A Chain A, The Structural Basis For Substrate-Induced Changes In
Redox Potential And Spin Equilibrium In Cytochrome
P450(Cam)
pdb|8CPP|A Chain A, Crystal Structures Of Cytochrome P450-Cam Complexed With
Camphane, Thiocamphor, And Adamantane: Factors
Controlling P450 Substrate Hydroxylation
Length = 414
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|1DZ8|A Chain A, Oxygen Complex Of P450cam From Pseudomonas Putida
pdb|1DZ8|B Chain B, Oxygen Complex Of P450cam From Pseudomonas Putida
pdb|1DZ6|A Chain A, Ferrous P450cam From Pseudomonas Putida
pdb|1DZ6|B Chain B, Ferrous P450cam From Pseudomonas Putida
pdb|1DZ9|A Chain A, Putative Oxo Complex Of P450cam From Pseudomonas Putida
pdb|1DZ9|B Chain B, Putative Oxo Complex Of P450cam From Pseudomonas Putida
pdb|1DZ4|A Chain A, Ferric P450cam From Pseudomonas Putida
pdb|1DZ4|B Chain B, Ferric P450cam From Pseudomonas Putida
pdb|1O76|A Chain A, Cyanide Complex Of P450cam From Pseudomonas Putida
pdb|1O76|B Chain B, Cyanide Complex Of P450cam From Pseudomonas Putida
pdb|1UYU|A Chain A, Xenon Complex Of Wildtype P450cam From Pseudomonas Putida
pdb|1UYU|B Chain B, Xenon Complex Of Wildtype P450cam From Pseudomonas Putida
pdb|1AKD|A Chain A, Cytochrome P450cam From Pseudomonas Putida, Complexed With
1s-Camphor
Length = 414
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|1LWL|A Chain A, Crystal Structure Of Cytochrome P450-Cam With A
Fluorescent Probe D-8-Ad (Adamantane-1-Carboxylic
Acid-5-Dimethylamino-
Naphthalene-1-Sulfonylamino-Octyl-Amide)
pdb|1RF9|A Chain A, Crystal Structure Of Cytochrome P450-Cam With A
Fluorescent Probe D-4-Ad (Adamantane-1-Carboxylic
Acid-5-Dimethylamino-
Naphthalene-1-Sulfonylamino-Butyl-Amide)
Length = 417
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1T85|A Chain A, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam Mutant (L358pC334A)
pdb|1T86|A Chain A, Crystal Structure Of The Ferrous Cytochrome P450cam Mutant
(L358pC334A)
pdb|1T86|B Chain B, Crystal Structure Of The Ferrous Cytochrome P450cam Mutant
(L358pC334A)
Length = 414
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|2ZUI|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant (D297n)
Length = 415
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2FE6|A Chain A, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
Length = 421
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1GEK|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1GEM|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1IWI|A Chain A, Putidaredoxin-Binding Stablilizes An Active Conformer Of
Cytochrome P450cam In Its Reduced State; Crystal
Structure Of Cytochrome P450cam
pdb|2ZAW|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
Reconstituted With 6- Methyl-6-Depropionated Hemin
pdb|2ZAX|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
pdb|2Z97|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
Reconstituted With 7- Methyl-7-Depropionated Hemin
pdb|2ZWT|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
pdb|2ZWU|A Chain A, Crystal Structure Of Camphor Soaked Ferric Cytochrome
P450cam
pdb|2L8M|A Chain A, Reduced And Co-Bound Cytochrome P450cam (Cyp101a1)
Length = 415
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1GEB|A Chain A, X-Ray Crystal Structure And Catalytic Properties Of
Thr252ile Mutant Of Cytochrome P450cam
Length = 415
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2LQD|A Chain A, Reduced And Co-Bound Cytochrome P450cam (Cyp101a1)
Length = 405
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
>pdb|2ZUH|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant (D297a)
Length = 415
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2FER|A Chain A, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
pdb|2FEU|A Chain A, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
pdb|2FEU|B Chain B, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
Length = 411
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
>pdb|2ZUJ|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant(D297l)
Length = 415
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|3FWI|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Tetragonal
Crystal Form
pdb|3FWJ|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Orthorombic
Crystal Form
Length = 405
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
>pdb|3FWF|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Monoclinic
Crystal Form
pdb|3FWF|B Chain B, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Monoclinic
Crystal Form
Length = 405
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
>pdb|2QBL|A Chain A, Crystal Structure Of Ferric G248t Cytochrome P450cam
pdb|2QBM|A Chain A, Crystal Structure Of The P450cam G248t Mutant In The
Cyanide Bound State
Length = 421
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2QBN|A Chain A, Crystal Structure Of Ferric G248v Cytochrome P450cam
pdb|2QBO|A Chain A, Crystal Structure Of The P450cam G248v Mutant In The
Cyanide Bound State
Length = 421
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|3FWG|A Chain A, Ferric Camphor Bound Cytochrome P450cam, Arg365leu,
Glu366gln, Monoclinic Crystal Form
pdb|3FWG|B Chain B, Ferric Camphor Bound Cytochrome P450cam, Arg365leu,
Glu366gln, Monoclinic Crystal Form
Length = 405
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,390,898
Number of Sequences: 62578
Number of extensions: 520692
Number of successful extensions: 1214
Number of sequences better than 100.0: 142
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 144
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)