Query 010916
Match_columns 497
No_of_seqs 332 out of 1689
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0895 Ubiquitin-conjugating 100.0 8.9E-56 1.9E-60 490.9 12.7 272 219-495 826-1097(1101)
2 KOG0895 Ubiquitin-conjugating 100.0 2.4E-40 5.2E-45 368.3 20.3 269 217-487 254-524 (1101)
3 KOG0417 Ubiquitin-protein liga 100.0 4E-39 8.7E-44 293.7 12.2 145 247-405 2-146 (148)
4 COG5078 Ubiquitin-protein liga 100.0 2.4E-38 5.3E-43 292.5 16.2 123 245-379 4-127 (153)
5 PTZ00390 ubiquitin-conjugating 100.0 6.1E-36 1.3E-40 276.2 16.0 139 247-422 3-141 (152)
6 KOG0419 Ubiquitin-protein liga 100.0 6.5E-36 1.4E-40 267.2 13.5 122 245-378 3-124 (152)
7 PLN00172 ubiquitin conjugating 100.0 4.5E-35 9.8E-40 268.8 16.0 141 247-424 2-142 (147)
8 KOG0425 Ubiquitin-protein liga 100.0 2.9E-32 6.2E-37 249.9 15.5 157 245-431 4-167 (171)
9 PF00179 UQ_con: Ubiquitin-con 100.0 3.4E-32 7.3E-37 245.3 14.0 138 250-423 1-139 (140)
10 KOG0418 Ubiquitin-protein liga 100.0 4.2E-32 9.1E-37 255.1 14.2 146 247-412 4-154 (200)
11 KOG0426 Ubiquitin-protein liga 100.0 2.3E-31 4.9E-36 238.3 13.7 152 245-426 3-161 (165)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 5.3E-31 1.1E-35 238.1 15.1 139 249-423 2-140 (141)
13 KOG0421 Ubiquitin-protein liga 100.0 2.5E-31 5.4E-36 240.9 12.4 147 243-427 26-172 (175)
14 KOG0424 Ubiquitin-protein liga 100.0 8.5E-31 1.8E-35 237.3 12.4 126 244-379 2-132 (158)
15 smart00212 UBCc Ubiquitin-conj 100.0 6.4E-30 1.4E-34 232.1 15.1 119 249-378 1-120 (145)
16 KOG0894 Ubiquitin-protein liga 100.0 1.6E-28 3.4E-33 235.2 16.9 158 243-426 2-159 (244)
17 KOG0422 Ubiquitin-protein liga 99.9 7.4E-27 1.6E-31 210.9 11.4 119 246-376 2-121 (153)
18 KOG0423 Ubiquitin-protein liga 99.9 6.2E-26 1.4E-30 211.1 5.9 155 242-413 6-160 (223)
19 KOG0420 Ubiquitin-protein liga 99.9 4.5E-24 9.7E-29 198.7 11.6 149 244-447 26-178 (184)
20 KOG0416 Ubiquitin-protein liga 99.9 5.4E-24 1.2E-28 197.9 11.6 139 248-426 5-145 (189)
21 KOG0427 Ubiquitin conjugating 99.9 3.6E-23 7.9E-28 185.5 11.7 115 244-368 13-127 (161)
22 KOG0428 Non-canonical ubiquiti 99.8 4.1E-21 8.9E-26 187.3 11.0 112 244-365 9-120 (314)
23 KOG0429 Ubiquitin-conjugating 99.6 1.3E-14 2.8E-19 140.3 12.8 113 248-370 21-136 (258)
24 KOG0896 Ubiquitin-conjugating 98.9 4.7E-09 1E-13 95.4 7.3 111 249-367 8-123 (138)
25 KOG0897 Predicted ubiquitin-co 97.9 1.5E-05 3.3E-10 71.1 5.7 66 295-368 13-78 (122)
26 PF14461 Prok-E2_B: Prokaryoti 97.9 2.6E-05 5.7E-10 70.8 6.6 68 291-366 34-105 (133)
27 PF05743 UEV: UEV domain; Int 97.7 0.00015 3.2E-09 65.4 7.5 81 275-367 32-117 (121)
28 KOG2391 Vacuolar sorting prote 96.6 0.006 1.3E-07 63.7 7.5 83 283-373 56-143 (365)
29 PF08694 UFC1: Ubiquitin-fold 96.5 0.0024 5.1E-08 59.4 3.9 87 244-337 22-118 (161)
30 PF14462 Prok-E2_E: Prokaryoti 94.2 0.41 9E-06 43.7 9.5 97 265-366 13-120 (122)
31 PF05773 RWD: RWD domain; Int 94.0 0.14 2.9E-06 43.6 6.0 68 249-317 4-73 (113)
32 KOG3357 Uncharacterized conser 93.5 0.11 2.3E-06 48.0 4.6 88 243-337 24-121 (167)
33 smart00591 RWD domain in RING 93.3 0.82 1.8E-05 38.6 9.5 27 291-317 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 77.7 3.2 7E-05 39.5 4.4 64 297-367 57-126 (162)
35 PF09765 WD-3: WD-repeat regio 62.7 19 0.00041 37.4 6.4 92 245-368 98-189 (291)
36 PF06152 Phage_min_cap2: Phage 57.4 46 0.00099 35.5 8.3 54 285-353 237-293 (361)
37 PF09288 UBA_3: Fungal ubiquit 38.0 9.5 0.00021 30.5 -0.3 18 470-487 4-21 (55)
38 KOG0309 Conserved WD40 repeat- 37.1 1E+02 0.0023 36.3 7.5 68 248-317 422-491 (1081)
39 KOG1047 Bifunctional leukotrie 37.0 25 0.00054 39.8 2.6 53 288-342 248-303 (613)
40 KOG3130 Uncharacterized conser 36.9 22 0.00047 38.8 2.0 19 79-97 263-281 (514)
41 PF06113 BRE: Brain and reprod 36.1 78 0.0017 33.8 5.9 44 275-325 53-96 (333)
42 cd03457 intradiol_dioxygenase_ 35.6 41 0.0009 32.8 3.6 26 291-316 85-110 (188)
43 cd00421 intradiol_dioxygenase 34.9 45 0.00097 30.9 3.6 26 291-316 64-90 (146)
44 COG2238 RPS19A Ribosomal prote 27.9 86 0.0019 29.7 4.1 59 423-487 50-110 (147)
45 PF10446 DUF2457: Protein of u 25.6 41 0.00088 37.1 1.8 14 425-438 433-446 (458)
46 cd03459 3,4-PCD Protocatechuat 24.3 87 0.0019 29.7 3.6 25 292-316 72-101 (158)
47 KOG4018 Uncharacterized conser 24.2 1.5E+02 0.0033 29.8 5.3 22 294-315 50-71 (215)
48 KOG1824 TATA-binding protein-i 24.0 39 0.00085 40.6 1.4 11 394-404 622-632 (1233)
49 PF06113 BRE: Brain and reprod 23.4 81 0.0018 33.6 3.5 25 292-316 305-329 (333)
No 1
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-56 Score=490.89 Aligned_cols=272 Identities=47% Similarity=0.785 Sum_probs=257.3
Q ss_pred cccccccCCCCCceecccccCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEE
Q 010916 219 KQFDTVDDFSDHHYNRMGFLGEEKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFD 298 (497)
Q Consensus 219 k~fd~v~~~sdHhy~~~~~~~~~~~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fd 298 (497)
++|+++.+..+|||........ +.+.|.+..+.||+.|..++|.||+||.+|++|++++++|+||.||||++|+|+|+
T Consensus 826 ~~F~v~~~~~~~h~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd 903 (1101)
T KOG0895|consen 826 LRFDVNYDYMDHHKNANDGNKA--AEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFD 903 (1101)
T ss_pred ccccccCchHHHhhhhcccccH--HHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEE
Confidence 6889999999999988754432 23489999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCeeeeecCCccccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcc
Q 010916 299 CIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378 (497)
Q Consensus 299 I~FP~dYP~~PPkV~F~T~~~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~ 378 (497)
|+||++||..||.|++++.+.|+|||+|++|+|||+||+||.|+..|.|+|+ |+|+|||+|||+|+++.+||||||||+
T Consensus 904 ~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~-s~~lq~l~s~q~l~l~~~py~ne~gy~ 982 (1101)
T KOG0895|consen 904 FQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPS-SSILQVLVSIQGLVLNEEPYFNEAGYE 982 (1101)
T ss_pred eecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcc-hhHHHHHHHhhhhhcccccccCccccc
Confidence 9999999999999999999999999999999999999999999999999995 699999999999999999999999999
Q ss_pred cCCCChhhhhhhhcccHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhcHHHHHHHHHHHhcCCccccccccCCCCcccc
Q 010916 379 KSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMEGAVVGHVNIKNGNPEVDQ 458 (497)
Q Consensus 379 ~~~~~~~~e~~s~~YNe~vr~~t~ktm~~~L~~pP~~Fe~~V~~HF~~~~~~Il~~~~~~~~ga~~g~~~~~~~~~~~~~ 458 (497)
.++++..|+++|+.||+++|+.+|++|+++||+||+.|+++|+.||++++.+|+++|++|+.|.+.|+. .++.+.++..
T Consensus 983 ~~~g~~~g~~~s~~y~~~~~~~~~~~~~~~~~~p~~~~~e~i~~Hf~~~~~ei~~~c~a~~~~~~~~s~-~k~~v~d~~~ 1061 (1101)
T KOG0895|consen 983 KQRGTAEGEKNSRVYNENAFLLTCKSMVYQLRKPPKCFEEVIHKHFYLRGVEIMAACEAWIAGILQGSS-DKRVVSDHAA 1061 (1101)
T ss_pred ccccccccccccccccchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccc-ccchhhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 7777888888
Q ss_pred cCccCCHHHHHHHHHHHHHHHHHHHhcCcccccccCC
Q 010916 459 VKWSSSKEFKDKLGQMMKILVNNFTRNGSTGCEQFLP 495 (497)
Q Consensus 459 ~~~~~s~~fk~~l~~~~~~L~~~F~~~G~~~~~~~~~ 495 (497)
+..+.+++||..|.++...+.-+|...|+ .|-.++.
T Consensus 1062 a~ks~s~~~k~~l~~~~~~~~~~~~~~~a-~~~~~~~ 1097 (1101)
T KOG0895|consen 1062 ALKSHSAQFKEELLKLPCPEGLAPDTVGA-PEVCEAT 1097 (1101)
T ss_pred HHhccchhhhhhhhhCCcccccchhhcCc-hhhhhcc
Confidence 88899999999999999999999999999 5766553
No 2
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-40 Score=368.31 Aligned_cols=269 Identities=43% Similarity=0.788 Sum_probs=248.7
Q ss_pred hccccccccCCCCCceecccccCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEE
Q 010916 217 GFKQFDTVDDFSDHHYNRMGFLGEEKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFV 296 (497)
Q Consensus 217 ~fk~fd~v~~~sdHhy~~~~~~~~~~~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~ 296 (497)
.+..|+.+++...|||.....+.. ..+..+.+|+++|++.|.+++|+||+|++.+.+|+..+++|.||.||||++|+|.
T Consensus 254 ~i~kf~~~ed~~~~~~~~k~~~~k-~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~ 332 (1101)
T KOG0895|consen 254 LIPKFKLVEDKSFHHYAKKGKSSK-PHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFL 332 (1101)
T ss_pred chhhhccccccccccccccCCCCC-ccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCcee
Confidence 678899999999999998876665 6789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCeeeeecC-CccccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCC
Q 010916 297 FDCIFPPSYPNEPPSVYYYSG-GLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEP 375 (497)
Q Consensus 297 fdI~FP~dYP~~PPkV~F~T~-~~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEP 375 (497)
|+|+||..||..||.|+++|. ++|++||+|.+|+|||++|+||.|...+.|+|..++|.|+|.+||.|+.+..||+|+|
T Consensus 333 Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py~ne~ 412 (1101)
T KOG0895|consen 333 FDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPYFNEP 412 (1101)
T ss_pred eEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCcccccc
Confidence 999999999999999999998 7899999999999999999999999999999997799999999999999999999999
Q ss_pred CcccCCCChhhhhhhhcccHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHhcHHHHHHHHHHHhcCCccccccccCCCCc
Q 010916 376 GFEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMEGAVVGHVNIKNGNPE 455 (497)
Q Consensus 376 g~~~~~~~~~~e~~s~~YNe~vr~~t~ktm~~~L~~pP~~Fe~~V~~HF~~~~~~Il~~~~~~~~ga~~g~~~~~~~~~~ 455 (497)
++....+.+.+...+..|++.+++..+..|++.+++||+.|+..+++||..+.+.++.+|.+|..++..+.. ..|....
T Consensus 413 ga~~~~~~a~~~qvs~cv~~~aii~vl~~~~~~Irrpp~~fe~~vqeh~s~~~~~vvievs~y~a~~tl~~~-~~~~p~~ 491 (1101)
T KOG0895|consen 413 GALQKRTSADPYQVSKCVSEEAIIEVLPMMVYEIRRPPEPFESTVQEHYSSREHDVVIEVSAYRAGATLGAK-VDGIPSG 491 (1101)
T ss_pred cccccccCCCccccccccccchhhhhhhhhhhhhcCCccccchHHhhhhcccchhhhhhhhhcccCcChhhc-CCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988876 5665555
Q ss_pred ccccCccCCHHHHHHHHHHHHHHHH-HHHhcCc
Q 010916 456 VDQVKWSSSKEFKDKLGQMMKILVN-NFTRNGS 487 (497)
Q Consensus 456 ~~~~~~~~s~~fk~~l~~~~~~L~~-~F~~~G~ 487 (497)
..++..+....|+..|..+.+.+++ +|...|.
T Consensus 492 r~ea~gs~~~~~~~dL~~~~Eq~leee~~~~ge 524 (1101)
T KOG0895|consen 492 REEAAGSIELKFPTDLAGFAEQVLEEEFQCLGE 524 (1101)
T ss_pred cccccccccccchhhhhhHHHHHHHhhcccccc
Confidence 5556667778889999999999776 6666665
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-39 Score=293.70 Aligned_cols=145 Identities=26% Similarity=0.492 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccccc
Q 010916 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLY 326 (497)
Q Consensus 247 a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy 326 (497)
+.+||+||++.|++++|+||.+.+.++|+++|+++|.||.|||||||+|+++|.||++||++||+|+|+|+ ||||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~Tk--IyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTK--IYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecc--cccCCcC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHHHH
Q 010916 327 DCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTM 405 (497)
Q Consensus 327 ~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~ktm 405 (497)
..|.|||++|+ ..|+|++ ||..||+||++||.+||| ++|.....+. ..+....+|++.+|.++.+.+
T Consensus 80 ~~G~IclDILk-------~~WsPAl-~i~~VllsI~sLL~~Pnp--ddPL~~~ia~--~~k~d~~~~~~~ARewt~kyA 146 (148)
T KOG0417|consen 80 SNGRICLDILK-------DQWSPAL-TISKVLLSICSLLSDPNP--DDPLVPDIAE--LYKTDRAKYERTAREWTRKYA 146 (148)
T ss_pred ccccchHHhhh-------ccCChhh-HHHHHHHHHHHHhcCCCC--CccccHHHHH--HHHhhHHHHHHHHHHHHHHHh
Confidence 99999999999 6899999 999999999999999999 9998776422 233344566666666666543
No 4
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-38 Score=292.47 Aligned_cols=123 Identities=31% Similarity=0.588 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCC-CcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ed-nl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
..+.+||++|++.|+++++++|++.+..+ |+..|+++|.||++||||||+|++.|.||++||++||+|+|.|+ +|||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~--i~HP 81 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTK--IFHP 81 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccC--CcCC
Confidence 34899999999999999999999999887 99999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
|||.+|+|||++|+ +.|+|++ +|.+||++||+||.+||+ ++|++.+
T Consensus 82 NV~~~G~vCLdIL~-------~~WsP~~-~l~sILlsl~slL~~PN~--~~Pln~d 127 (153)
T COG5078 82 NVDPSGNVCLDILK-------DRWSPVY-TLETILLSLQSLLLSPNP--DSPLNTE 127 (153)
T ss_pred CcCCCCCChhHHHh-------CCCCccc-cHHHHHHHHHHHHcCCCC--CCCCChH
Confidence 99999999999999 7999999 999999999999999998 8887664
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=6.1e-36 Score=276.19 Aligned_cols=139 Identities=27% Similarity=0.535 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccccc
Q 010916 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLY 326 (497)
Q Consensus 247 a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy 326 (497)
+.|||+||+++|++++++||.|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~--i~HPNV~ 80 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK--IYHPNID 80 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC--CeeceEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHHHHH
Q 010916 327 DCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMM 406 (497)
Q Consensus 327 ~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~ktm~ 406 (497)
.+|.|||++|+ +.|+|++ ||.+||++|++||.+|+| ++|.+.. +.
T Consensus 81 ~~G~iCl~iL~-------~~W~p~~-ti~~iL~~i~~ll~~P~~--~~pln~~-------------------------aa 125 (152)
T PTZ00390 81 KLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPEP--DDPLDTS-------------------------VA 125 (152)
T ss_pred CCCeEECccCc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCchHHH-------------------------HH
Confidence 99999999997 6899998 999999999999999988 7775542 23
Q ss_pred HHhcCCcchHHHHHHH
Q 010916 407 YTLRKPPKHFEDLVAM 422 (497)
Q Consensus 407 ~~L~~pP~~Fe~~V~~ 422 (497)
.++++.+..|++.++.
T Consensus 126 ~~~~~d~~~f~~~a~~ 141 (152)
T PTZ00390 126 DHFKNNRADAEKVARE 141 (152)
T ss_pred HHHHHCHHHHHHHHHH
Confidence 4466677777775554
No 6
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-36 Score=267.18 Aligned_cols=122 Identities=30% Similarity=0.615 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
..+.|||+|+++.|++++|.||++.|.++|+..|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.|. .||||
T Consensus 3 tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~--mFHPN 80 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSK--MFHPN 80 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeee--ccCCC
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcc
Q 010916 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378 (497)
Q Consensus 325 Vy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~ 378 (497)
||++|.+||++|. ..|+|.+ ++..||.|||+||.+|+| +.|++.
T Consensus 81 vya~G~iClDiLq-------NrWsp~Y-dva~ILtsiQslL~dPn~--~sPaN~ 124 (152)
T KOG0419|consen 81 VYADGSICLDILQ-------NRWSPTY-DVASILTSIQSLLNDPNP--NSPANS 124 (152)
T ss_pred cCCCCcchHHHHh-------cCCCCch-hHHHHHHHHHHHhcCCCC--CCcccH
Confidence 9999999999998 6999998 999999999999999999 888665
No 7
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.5e-35 Score=268.83 Aligned_cols=141 Identities=29% Similarity=0.574 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccccc
Q 010916 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLY 326 (497)
Q Consensus 247 a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy 326 (497)
+.+||+||+++|++++++|+.+.+.++|+..|+++|.||++|||+||.|+|.|.||++||+.||+|+|.|+ +|||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK--IYHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC--cccceEC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHHHHH
Q 010916 327 DCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMM 406 (497)
Q Consensus 327 ~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~ktm~ 406 (497)
.+|.|||++|. +.|+|++ +|.+||++|++||.+|++ ++|.+.. +.
T Consensus 80 ~~G~iCl~il~-------~~W~p~~-ti~~il~~i~~ll~~P~~--~~p~n~~-------------------------aa 124 (147)
T PLN00172 80 SNGSICLDILR-------DQWSPAL-TVSKVLLSISSLLTDPNP--DDPLVPE-------------------------IA 124 (147)
T ss_pred CCCEEEcccCc-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCchHHH-------------------------HH
Confidence 99999999997 6899998 999999999999999988 6665442 12
Q ss_pred HHhcCCcchHHHHHHHHH
Q 010916 407 YTLRKPPKHFEDLVAMHF 424 (497)
Q Consensus 407 ~~L~~pP~~Fe~~V~~HF 424 (497)
.++.+.++.|++.++++-
T Consensus 125 ~~~~~~~~~f~~~a~~~~ 142 (147)
T PLN00172 125 RVFKENRSRYEATAREWT 142 (147)
T ss_pred HHHHHCHHHHHHHHHHHH
Confidence 445667777777666544
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-32 Score=249.92 Aligned_cols=157 Identities=23% Similarity=0.412 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecC-CCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCE-ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~e-dnl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
..+..-|+++|+.|++.+.+|+.+...+ .|++.|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|. +|||
T Consensus 4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~--mwHP 81 (171)
T KOG0425|consen 4 SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSK--MWHP 81 (171)
T ss_pred chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehh--hcCC
Confidence 3467889999999999999999998755 599999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcC------CCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHH
Q 010916 324 NLYDCGKVCLSLLGTWT------GKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDA 397 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~------G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~v 397 (497)
|||++|+||+|||.... +...|.|+|.. |+++||+||.+||..||- ..|++-++
T Consensus 82 Nvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~-tvetIllSiIsmL~~PN~--~SPANVDA----------------- 141 (171)
T KOG0425|consen 82 NVYEDGDVCISILHPPGDDPSGYELPSERWLPVQ-TVETILLSIISMLNSPND--ESPANVDA----------------- 141 (171)
T ss_pred CcCCCCCEEEEeecCCCCCcccCCChhhccCCcc-chhHhHHHHHHHHcCCCC--CCccchHH-----------------
Confidence 99999999999998653 23589999998 999999999999977765 66655431
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHhcHHHH
Q 010916 398 FIYSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDI 431 (497)
Q Consensus 398 r~~t~ktm~~~L~~pP~~Fe~~V~~HF~~~~~~I 431 (497)
...+|..|++|++.|+...+.....+
T Consensus 142 --------a~~~Ren~~EykkkV~r~vr~s~e~~ 167 (171)
T KOG0425|consen 142 --------AKEWRENPEEYKKKVRRCVRRSQEEA 167 (171)
T ss_pred --------HHHHhhCHHHHHHHHHHHHHHHHHhh
Confidence 13477888999998888777655443
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.98 E-value=3.4e-32 Score=245.35 Aligned_cols=138 Identities=33% Similarity=0.637 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCC-CcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccccCC
Q 010916 250 KIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC 328 (497)
Q Consensus 250 RL~kElk~L~k~~p~gI~V~p~ed-nl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy~~ 328 (497)
||++|++.|+++++.||.+.+.++ ++..|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||+.+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~--i~HPni~~~ 78 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP--IFHPNIDEN 78 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS---SBTTB-TT
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccc--ccccccccc
Confidence 999999999999999999999886 99999999999999999999999999999999999999999999 999999999
Q ss_pred CCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHHHHHHH
Q 010916 329 GKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYT 408 (497)
Q Consensus 329 GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~ktm~~~ 408 (497)
|+|||++|.. +.|+|.+ +|.+||++|++||.+|++ .+|.+.+ +..+
T Consensus 79 G~icl~~l~~------~~W~p~~-~i~~il~~i~~ll~~p~~--~~~~n~~-------------------------a~~~ 124 (140)
T PF00179_consen 79 GRICLDILNP------ESWSPSY-TIESILLSIQSLLSEPNP--EDPLNEE-------------------------AAEL 124 (140)
T ss_dssp SBBGHGGGTT------TTC-TTS-HHHHHHHHHHHHHHSTCT--TSTSSHH-------------------------HHHH
T ss_pred ccchhhhhhc------ccCCccc-ccccHHHHHHHHHhCCCC--CCcchHH-------------------------HHHH
Confidence 9999999983 4699988 999999999999988766 6665432 2244
Q ss_pred hcCCcchHHHHHHHH
Q 010916 409 LRKPPKHFEDLVAMH 423 (497)
Q Consensus 409 L~~pP~~Fe~~V~~H 423 (497)
+++.++.|++.|+++
T Consensus 125 ~~~~~~~f~~~~~~~ 139 (140)
T PF00179_consen 125 YKNDREEFEKKAREW 139 (140)
T ss_dssp HHHCHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHc
Confidence 556677777766653
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.2e-32 Score=255.15 Aligned_cols=146 Identities=26% Similarity=0.495 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhcC---CCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 247 WAKKIQEEWKILEKNL---PDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 247 a~KRL~kElk~L~k~~---p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
+.+||++|++++.+++ -.||.+....+++..+++.|.||+|||||||+|.++|.+|.+|||+||+|+|.|+ ||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk--IwHP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK--IWHP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee--eecC
Confidence 7899999999999988 5899999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccC-CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhh-hhcccHHHHHHH
Q 010916 324 NLYD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKM-SRSYNDDAFIYS 401 (497)
Q Consensus 324 NVy~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~-s~~YNe~vr~~t 401 (497)
||.+ +|.|||++|+ ..|.|+. ||++||+|||+||..|+| ++| +++..+ ...-|..+|..+
T Consensus 82 nVSs~tGaICLDilk-------d~Wa~sl-TlrtvLislQalL~~pEp--~dP--------qDavva~qy~~n~~~F~~T 143 (200)
T KOG0418|consen 82 NVSSQTGAICLDILK-------DQWAASL-TLRTVLISLQALLCAPEP--KDP--------QDAVVAEQYVDNYEMFYKT 143 (200)
T ss_pred CCCcccccchhhhhh-------cccchhh-hHHHHHHHHHHHHcCCCC--CCh--------HHHHHHHHHhhhHHHHHHH
Confidence 9987 9999999998 7999998 999999999999999999 666 333332 223366678888
Q ss_pred HHHHHHHhcCC
Q 010916 402 LKTMMYTLRKP 412 (497)
Q Consensus 402 ~ktm~~~L~~p 412 (497)
+|.+...+..-
T Consensus 144 Ar~WT~~fA~~ 154 (200)
T KOG0418|consen 144 ARYWTTEFAGG 154 (200)
T ss_pred HHHHHHHHhCC
Confidence 88666655543
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=238.26 Aligned_cols=152 Identities=24% Similarity=0.426 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEe-cCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRV-CEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p-~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
..++|||++|+++|..++|+||.+.| .|+|++.|.++|.||++|||+||+|-.++.||.+||..||+++|.-. +|||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~--~fHP 80 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCE--MFHP 80 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecc--cccC
Confidence 46899999999999999999999987 57899999999999999999999999999999999999999999998 9999
Q ss_pred cccCCCCeeeccccCcCC------CCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHH
Q 010916 324 NLYDCGKVCLSLLGTWTG------KSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDA 397 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G------~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~v 397 (497)
|||++|+||+|||....+ ...|.|+|.+ ++..||+|+.+||..||- ++.++-
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQ-SvEKILLSV~SMLaEPNd-------ESgANv-------------- 138 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQ-SVEKILLSVVSMLAEPND-------ESGANV-------------- 138 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHH-HHHHHHHHHHHHHcCCCc-------ccCccc--------------
Confidence 999999999999986543 2478999998 999999999999976653 322221
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHh
Q 010916 398 FIYSLKTMMYTLRKPPKHFEDLVAMHFRN 426 (497)
Q Consensus 398 r~~t~ktm~~~L~~pP~~Fe~~V~~HF~~ 426 (497)
.+..++|....+|+++++...++
T Consensus 139 ------dA~~mWRe~R~ef~~i~~~lvrK 161 (165)
T KOG0426|consen 139 ------DACKMWREDREEFEKIAKRLVRK 161 (165)
T ss_pred ------HHHHHHHHhHHHHHHHHHHHHHH
Confidence 12245777788888888766554
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=5.3e-31 Score=238.11 Aligned_cols=139 Identities=31% Similarity=0.551 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccccCC
Q 010916 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC 328 (497)
Q Consensus 249 KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy~~ 328 (497)
|||++|+++|++.++.|+.|.+.++++..|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+ +|||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~--i~HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTK--IYHPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCC--cccCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHHHHHHH
Q 010916 329 GKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTMMYT 408 (497)
Q Consensus 329 GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~ktm~~~ 408 (497)
|.||+++|.. ..|+|++ +|.+||.+|+++|.+|++ +.|.+. .+..+
T Consensus 80 G~icl~~l~~------~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~n~-------------------------~aa~~ 125 (141)
T cd00195 80 GKICLSILKT------HGWSPAY-TLRTVLLSLQSLLNEPNP--SDPLNA-------------------------EAAKL 125 (141)
T ss_pred CCCchhhcCC------CCcCCcC-cHHHHHHHHHHHHhCCCC--CCchhH-------------------------HHHHH
Confidence 9999999983 2599998 899999999999997665 666433 22344
Q ss_pred hcCCcchHHHHHHHH
Q 010916 409 LRKPPKHFEDLVAMH 423 (497)
Q Consensus 409 L~~pP~~Fe~~V~~H 423 (497)
+++.++.|++.|+.+
T Consensus 126 ~~~~~~~f~~~~~~~ 140 (141)
T cd00195 126 YKENREEFKKKAREW 140 (141)
T ss_pred HHHCHHHHHHHHHHh
Confidence 667788888877754
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=240.88 Aligned_cols=147 Identities=20% Similarity=0.342 Sum_probs=130.1
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccc
Q 010916 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (497)
Q Consensus 243 ~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifH 322 (497)
......|||++||..|.....+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+ .||
T Consensus 26 ~~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltp--c~H 103 (175)
T KOG0421|consen 26 DGHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTP--CFH 103 (175)
T ss_pred cCchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecc--ccC
Confidence 356778999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHH
Q 010916 323 PNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSL 402 (497)
Q Consensus 323 PNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~ 402 (497)
|||+-.|.|||+||. ++|+..+ .+++||+|||+||-+|| +.+..+++.+
T Consensus 104 PNVD~~GnIcLDILk-------dKWSa~Y-dVrTILLSiQSLLGEPN-------n~SPLNaqAA---------------- 152 (175)
T KOG0421|consen 104 PNVDLSGNICLDILK-------DKWSAVY-DVRTILLSIQSLLGEPN-------NSSPLNAQAA---------------- 152 (175)
T ss_pred CCccccccchHHHHH-------HHHHHHH-hHHHHHHHHHHHhCCCC-------CCCcchhHHH----------------
Confidence 999999999999999 8999998 99999999999995544 4444443322
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhc
Q 010916 403 KTMMYTLRKPPKHFEDLVAMHFRNH 427 (497)
Q Consensus 403 ktm~~~L~~pP~~Fe~~V~~HF~~~ 427 (497)
.|...|++|++.+.+.|.+.
T Consensus 153 -----elW~d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 153 -----ELWSDQEEYKKYLEALYKEI 172 (175)
T ss_pred -----HHhcCHHHHHHHHHHHhhcc
Confidence 25568899999888877643
No 14
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.5e-31 Score=237.35 Aligned_cols=126 Identities=27% Similarity=0.514 Sum_probs=114.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecC-----CCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCC
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCE-----ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGG 318 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~e-----dnl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~ 318 (497)
+..++.||+.|-+.+.++.|-|+++.|.. .|+..|.+.|.||+|||||||.|.+.|.||++||+.||+++|.++
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p- 80 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP- 80 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC-
Confidence 34568999999999999999999999853 378999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 319 LRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 319 ~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
.||||||++|.|||+||+. ...|+|+. ||.|||++||.||..||+ .+|++..
T Consensus 81 -l~HPNVypsgtVcLsiL~e-----~~~W~pai-tikqiL~gIqdLL~~Pn~--~~pAq~e 132 (158)
T KOG0424|consen 81 -LFHPNVYPSGTVCLSILNE-----EKDWRPAI-TIKQILLGIQDLLDTPNI--TSPAQTE 132 (158)
T ss_pred -CcCCCcCCCCcEehhhhcc-----ccCCCchh-hHHHHHHHHHHHhcCCCC--CCchhhH
Confidence 9999999999999999983 23499999 999999999999999888 7776553
No 15
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.97 E-value=6.4e-30 Score=232.06 Aligned_cols=119 Identities=34% Similarity=0.650 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhcCCCCeEEEecCC-CcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccccC
Q 010916 249 KKIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYD 327 (497)
Q Consensus 249 KRL~kElk~L~k~~p~gI~V~p~ed-nl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy~ 327 (497)
+||++|++.|+++++.|+.|.+.++ |+..|+++|.||.+|||+||.|.|.|.||++||+.||+|+|.|+ +|||||++
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~--i~Hp~i~~ 78 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK--IYHPNVDS 78 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC--ceEeeECC
Confidence 5999999999999999999998775 99999999999999999999999999999999999999999999 99999999
Q ss_pred CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcc
Q 010916 328 CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378 (497)
Q Consensus 328 ~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~ 378 (497)
+|.||+++|.. +.|+|.+ +|.+||.+|+++|.+|++ ++|.+.
T Consensus 79 ~G~icl~~l~~------~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~n~ 120 (145)
T smart00212 79 SGEICLDILKQ------EKWSPAT-TLETVLLSIQSLLSEPNP--DSPLNA 120 (145)
T ss_pred CCCEehhhcCC------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH
Confidence 99999999972 6899997 999999999999988766 667544
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=235.20 Aligned_cols=158 Identities=23% Similarity=0.445 Sum_probs=133.1
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccc
Q 010916 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (497)
Q Consensus 243 ~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifH 322 (497)
+++++.|||+||++.|.++|+++|.++|.++|+.+||.+|.||++|||+||.|+..|.||++||++||.|++.|+++||-
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHH
Q 010916 323 PNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSL 402 (497)
Q Consensus 323 PNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~ 402 (497)
+| -++|||+-. +|++.|+|+| ++.+||.+|.++|.+ ++|...+.. +.+.++ |.++.
T Consensus 82 tn----tRLCLSiSD----fHPdsWNP~W-sVStILtGLlSFM~e-----~~pTtGSI~-tS~~~k---------r~lA~ 137 (244)
T KOG0894|consen 82 TN----TRLCLSISD----FHPDSWNPGW-SVSTILTGLLSFMTE-----DSPTTGSIE-TSDQDK---------RMLAK 137 (244)
T ss_pred cC----ceEEEeccc----cCcCcCCCcc-cHHHHHHHHHHHHhc-----CCCccCccc-ccHHHH---------HHHHH
Confidence 99 899999976 7999999999 999999999999976 667776643 333333 23445
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHh
Q 010916 403 KTMMYTLRKPPKHFEDLVAMHFRN 426 (497)
Q Consensus 403 ktm~~~L~~pP~~Fe~~V~~HF~~ 426 (497)
.+....++++ .|.++.-+.+.+
T Consensus 138 ~SlaFN~kn~--~F~~lFPE~Vee 159 (244)
T KOG0894|consen 138 SSLAFNLKNP--KFCELFPEVVEE 159 (244)
T ss_pred hhhhhccCCh--HHHHHhHHHHHH
Confidence 5666666664 344443333333
No 17
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.4e-27 Score=210.88 Aligned_cols=119 Identities=29% Similarity=0.549 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCe-EEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 246 NWAKKIQEEWKILEKNLPDTI-FVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 246 ~a~KRL~kElk~L~k~~p~gI-~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
.+.+||+|||.+|+++....+ -++..+.|++.|.++|+ |.+-||..|.|.+.|.||.+|||+||+|+|.|+ |||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tk--iYHpN 78 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTK--IYHPN 78 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeee--eccCC
Confidence 357999999999999988766 56778899999999999 899999999999999999999999999999999 99999
Q ss_pred ccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCC
Q 010916 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPG 376 (497)
Q Consensus 325 Vy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg 376 (497)
|++.|.|||.+|.+ |+|.|++ ++.|||+++.+|+.+|+| .+|.
T Consensus 79 VDe~gqvClPiis~------EnWkP~T-~teqVlqaLi~liN~P~p--e~pl 121 (153)
T KOG0422|consen 79 VDEKGQVCLPIISA------ENWKPAT-RTEQVLQALIALINDPEP--EHPL 121 (153)
T ss_pred CCCCCceeeeeeec------ccccCcc-cHHHHHHHHHHHhcCCCc--cccc
Confidence 99999999999986 9999999 999999999999988877 5554
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.2e-26 Score=211.12 Aligned_cols=155 Identities=29% Similarity=0.540 Sum_probs=138.9
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccc
Q 010916 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRL 321 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~if 321 (497)
.-+...+|.|+||++.|..+||+||.|.+.++++....+.|.||.||||++|+|+..+.+..+||..||+-+|+|+ ||
T Consensus 6 nlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTK--IF 83 (223)
T KOG0423|consen 6 NLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTK--IF 83 (223)
T ss_pred CCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeee--ec
Confidence 3467889999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHH
Q 010916 322 NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYS 401 (497)
Q Consensus 322 HPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t 401 (497)
||||-.+|.||...|. ..|+|.. .|+.||+.|..||..|+| +++.+.+.++.-.+.|.+.+++..
T Consensus 84 HPNVaaNGEICVNtLK-------kDW~p~L-GirHvLltikCLLI~PnP-------ESALNEeAGkmLLEnYdeYa~rAR 148 (223)
T KOG0423|consen 84 HPNVAANGEICVNTLK-------KDWNPSL-GIRHVLLTIKCLLIEPNP-------ESALNEEAGKMLLENYDEYARRAR 148 (223)
T ss_pred cCCcccCceehhhhhh-------cccCccc-chhhHhhhhheeeecCCh-------HHHHhHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999998 6999999 999999999999999998 556666777777788888887776
Q ss_pred HHHHHHHhcCCc
Q 010916 402 LKTMMYTLRKPP 413 (497)
Q Consensus 402 ~ktm~~~L~~pP 413 (497)
+.+-++.-.+||
T Consensus 149 l~TeIHa~p~~~ 160 (223)
T KOG0423|consen 149 LYTEIHAKPKPK 160 (223)
T ss_pred HHHHhhcCCCCC
Confidence 665555444443
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.5e-24 Score=198.68 Aligned_cols=149 Identities=26% Similarity=0.439 Sum_probs=120.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEe--cCCCcc--eeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRV--CEARME--LLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGL 319 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p--~ednl~--~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ 319 (497)
.+.+.-||++++.+ .++|+++.... ..+++. .++.+|. |..+.|.||.|.|.+.+|+.||+.||+|+|+|+
T Consensus 26 ~s~a~lrl~~di~e--lnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk-- 100 (184)
T KOG0420|consen 26 VSAALLRLKKDILE--LNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK-- 100 (184)
T ss_pred ccHHHHHHHhhhhh--ccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec--
Confidence 45556666666655 46888875432 234444 4888888 999999999999999999999999999999999
Q ss_pred cccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHH
Q 010916 320 RLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFI 399 (497)
Q Consensus 320 ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~ 399 (497)
+|||||+.+|.|||+||. +.|+|.. +|.+|+.+++.|+.+|+| ++|++-.
T Consensus 101 V~HPNId~~GnVCLnILR-------edW~P~l-nL~sIi~GL~~LF~epn~--eDpLN~e-------------------- 150 (184)
T KOG0420|consen 101 VYHPNIDLDGNVCLNILR-------EDWRPVL-NLNSIIYGLQFLFLEPNP--EDPLNKE-------------------- 150 (184)
T ss_pred cccCCcCCcchHHHHHHH-------hcCcccc-chHHHHHHHHHHhccCCC--cccccHH--------------------
Confidence 999999999999999998 8999998 999999999999999886 8887652
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhcHHHHHHHHHHHhcCCccccc
Q 010916 400 YSLKTMMYTLRKPPKHFEDLVAMHFRNHAHDILVACKAYMEGAVVGHV 447 (497)
Q Consensus 400 ~t~ktm~~~L~~pP~~Fe~~V~~HF~~~~~~Il~~~~~~~~ga~~g~~ 447 (497)
+...|+..++.|+..|+ .+|.|-.+|.+
T Consensus 151 -----AA~~l~~n~e~F~~~Vr---------------~~m~gg~v~~~ 178 (184)
T KOG0420|consen 151 -----AAAVLKSNREGFENNVR---------------RAMSGGCVGQT 178 (184)
T ss_pred -----HHHHHHhCHHHHHHHHH---------------HHHhcCccCce
Confidence 23558888899988444 46766666654
No 20
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.4e-24 Score=197.89 Aligned_cols=139 Identities=19% Similarity=0.442 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccccC
Q 010916 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYD 327 (497)
Q Consensus 248 ~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy~ 327 (497)
-|||-.++..|..+ +..|....+.+..+++.+.||.+|||+||+|+++|.+|++||++.|.|.|.|+ ||||||+.
T Consensus 5 ~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnK--IfHPNIDe 79 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNK--IFHPNIDE 79 (189)
T ss_pred ccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceee--ccCCCchh
Confidence 48999998888655 56799999999999999999999999999999999999999999999999999 99999997
Q ss_pred -CCCeeeccccCcCCCCCCCccccccchHHHHHHHH-HHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHHHH
Q 010916 328 -CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQ-ALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTM 405 (497)
Q Consensus 328 -~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIq-sLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~ktm 405 (497)
+|.|||++++ +.|+|.+ .+..|+..+. .||.-||| .+|++..+ +
T Consensus 80 ~SGsVCLDViN-------QtWSp~y-DL~NIfetfLPQLL~YPNp--~DPLN~eA--------A---------------- 125 (189)
T KOG0416|consen 80 ASGSVCLDVIN-------QTWSPLY-DLVNIFETFLPQLLRYPNP--SDPLNGEA--------A---------------- 125 (189)
T ss_pred ccCccHHHHHh-------hhhhHHH-HHHHHHHHHhHHHhcCCCC--CCCcccHH--------H----------------
Confidence 9999999999 6999998 9999998875 88999999 88877632 1
Q ss_pred HHHhcCCcchHHHHHHHHHHh
Q 010916 406 MYTLRKPPKHFEDLVAMHFRN 426 (497)
Q Consensus 406 ~~~L~~pP~~Fe~~V~~HF~~ 426 (497)
.++.+.|+.|++.|+....+
T Consensus 126 -al~l~~~~~Y~~~v~eY~~k 145 (189)
T KOG0416|consen 126 -ALYLRDPEEYEEKVKEYIKK 145 (189)
T ss_pred -HHHhcCHHHHHHHHHHHHHH
Confidence 34667778888877765443
No 21
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.6e-23 Score=185.49 Aligned_cols=115 Identities=24% Similarity=0.485 Sum_probs=108.7
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
+..+.+||||||.+|+.++|.|+.++ ..+|+..|.+-+.|.+||.|+|-.|.+.+.||+.||+..|.|.|..+ ...||
T Consensus 13 s~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~-~P~HP 90 (161)
T KOG0427|consen 13 SKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP-APLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC-CCCCC
Confidence 56788999999999999999999988 56799999999999999999999999999999999999999999987 57899
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhcc
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~p 368 (497)
+||.+|.|||+||. +.|+|+. ++.+|.+||.+||.+.
T Consensus 91 HiYSNGHICL~iL~-------d~WsPAm-sv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 91 HIYSNGHICLDILY-------DSWSPAM-SVQSVCLSILSMLSSS 127 (161)
T ss_pred ceecCCeEEEEeec-------ccCCcch-hhHHHHHHHHHHHccC
Confidence 99999999999998 8999999 9999999999999764
No 22
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.1e-21 Score=187.30 Aligned_cols=112 Identities=22% Similarity=0.432 Sum_probs=105.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
...++|||+||.++|+ +|.+...+.+.|+|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+++||--
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~ 87 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEV 87 (314)
T ss_pred cCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceee
Confidence 3567999999999998 777778899999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHH
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALI 365 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL 365 (497)
| -+|||||.+ .|+|.|.|+| +|++.|++|.++|
T Consensus 88 n----kKiCLSISg----yHPEtWqPSW-SiRTALlAlIgFm 120 (314)
T KOG0428|consen 88 N----KKICLSISG----YHPETWQPSW-SIRTALLALIGFM 120 (314)
T ss_pred C----ceEEEEecC----CCccccCcch-hHHHHHHHHHccc
Confidence 8 899999965 8999999999 8999999999988
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-14 Score=140.33 Aligned_cols=113 Identities=22% Similarity=0.379 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCC--CCCeeeeecCCccccccc
Q 010916 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN--EPPSVYYYSGGLRLNPNL 325 (497)
Q Consensus 248 ~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~--~PPkV~F~T~~~ifHPNV 325 (497)
--.|..|+..+.+...+||+|.|.-.+-++|.++|++..| .|.||+|+|.|.+|.+||. .-|+|.|.+. +|||.|
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~--vfHP~i 97 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQS--VFHPLI 97 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeecc--cccccc
Confidence 3467888888888899999999999999999999998776 6999999999999999994 6799999999 999999
Q ss_pred cC-CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCC
Q 010916 326 YD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKP 370 (497)
Q Consensus 326 y~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnP 370 (497)
.+ ++.+||+-.. ..|......|++||+.||.++.+|+-
T Consensus 98 cp~skeLdl~raf-------~eWRk~ehhiwqvL~ylqriF~dpd~ 136 (258)
T KOG0429|consen 98 CPKSKELDLNRAF-------PEWRKEEHHIWQVLVYLQRIFYDPDV 136 (258)
T ss_pred CCCccceeHhhhh-------hhhhccccHHHHHHHHHHHHhcCccc
Confidence 98 9999998765 35998888999999999999987764
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.7e-09 Score=95.39 Aligned_cols=111 Identities=19% Similarity=0.297 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCCCCe-EEEec-CCC--cceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 249 KKIQEEWKILEKNLPDTI-FVRVC-EAR--MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 249 KRL~kElk~L~k~~p~gI-~V~p~-edn--l~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
-||.+||..-++..-+|. +--.. .++ +..|.++|.||+.|+||+-+|.+.|.+.++||..||.|+|.|+ +--+-
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk--inm~g 85 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK--INMNG 85 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE--eeecc
Confidence 468888887777665554 22222 223 5679999999999999999999999999999999999999998 55555
Q ss_pred ccC-CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhc
Q 010916 325 LYD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367 (497)
Q Consensus 325 Vy~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~ 367 (497)
|.. +|.|--.-+.. -++|.-.+ +|..||..+.-+++.
T Consensus 86 vn~~~g~Vd~~~i~~-----L~~W~~~y-~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITV-----LARWQRSY-SIKMVLGQLRKEMMS 123 (138)
T ss_pred cccCCCccCccccch-----hhcccccc-hhhHHHHhhhHHHHH
Confidence 544 66664332221 15899988 999999999866544
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.5e-05 Score=71.10 Aligned_cols=66 Identities=21% Similarity=0.415 Sum_probs=52.6
Q ss_pred EEEEEEcCCCCCCCCCeeeeecCCccccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhcc
Q 010916 295 FVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368 (497)
Q Consensus 295 F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~p 368 (497)
..+.+.|+.+||+.||.++-..+ .+-.--|-.+|.||+.||.+ ++|+.++ +|+.++++|-+++..-
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p-~~~~Gyvl~ggAIcmellt~------qgwssay-~Ve~vi~qiaatlVkG 78 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKP-LEDEGYVLEGGAICMELLTK------QGWSSAY-EVERVIMQIAATLVKG 78 (122)
T ss_pred eEeeeecccCCCCCCCcceeeee-cccCCEEecchhhHHHHHcc------ccccchh-hHHHHHHHHHHHhhcc
Confidence 35678899999999999987665 12222334589999999986 8999987 9999999999888643
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.89 E-value=2.6e-05 Score=70.77 Aligned_cols=68 Identities=29% Similarity=0.543 Sum_probs=59.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeeecCCc-cccccccCCCCeee---ccccCcCCCCCCCccccccchHHHHHHHHHHHh
Q 010916 291 HDGLFVFDCIFPPSYPNEPPSVYYYSGGL-RLNPNLYDCGKVCL---SLLGTWTGKSTEMWDKNKSTMLQVLVSIQALIL 366 (497)
Q Consensus 291 eGG~F~fdI~FP~dYP~~PPkV~F~T~~~-ifHPNVy~~GkVCL---slL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~ 366 (497)
.|+.|.+.|.||+.||..||.|....+.. .+=|+|+.+|.||+ ++.- +.|.|.. .+..+|..++.+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------D~~~P~~-~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------DPWDPEG-IIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------CccCHHH-HHHHHHHHHHHHHH
Confidence 68999999999999999999999986532 27899999999999 4443 7899987 99999999999886
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.66 E-value=0.00015 Score=65.36 Aligned_cols=81 Identities=21% Similarity=0.423 Sum_probs=55.3
Q ss_pred cceeEEEEEcCCCCCCCCcEE--EEEEEcCCCCCCCCCeeeeecC---CccccccccCCCCeeeccccCcCCCCCCCccc
Q 010916 275 MELLRAVMIGPSGTPYHDGLF--VFDCIFPPSYPNEPPSVYYYSG---GLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDK 349 (497)
Q Consensus 275 l~~W~~vI~GP~gTPYeGG~F--~fdI~FP~dYP~~PPkV~F~T~---~~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP 349 (497)
+..+.++|. -.|.|..| -+.|.+|.+||..||.|..... ..+-+.+|+.+|+|.+..|. .|++
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~--------~W~~ 99 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ--------NWNP 99 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH--------T--T
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc--------cCCC
Confidence 344455554 35888887 5678899999999999987542 23445699999999999997 7877
Q ss_pred cccchHHHHHHHHHHHhc
Q 010916 350 NKSTMLQVLVSIQALILN 367 (497)
Q Consensus 350 ~~STI~qVLlSIqsLL~~ 367 (497)
..|+|.+++..++..+..
T Consensus 100 ~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 100 PSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp TTS-HHHHHHHHHHCCCH
T ss_pred CCCCHHHHHHHHHHHHhH
Confidence 667999888888876643
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.006 Score=63.66 Aligned_cols=83 Identities=22% Similarity=0.394 Sum_probs=65.0
Q ss_pred EcCCCCCCCCcEEE--EEEEcCCCCCCCCCeeeeecC---CccccccccCCCCeeeccccCcCCCCCCCccccccchHHH
Q 010916 283 IGPSGTPYHDGLFV--FDCIFPPSYPNEPPSVYYYSG---GLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQV 357 (497)
Q Consensus 283 ~GP~gTPYeGG~F~--fdI~FP~dYP~~PPkV~F~T~---~~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qV 357 (497)
.|---+||.|.+|- +.|.+++.||..||.|..... ....|-+|+.+|+|.|..|. .|.|..|++..+
T Consensus 56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh--------~W~~pssdLv~L 127 (365)
T KOG2391|consen 56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH--------NWDPPSSDLVGL 127 (365)
T ss_pred cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc--------cCCCccchHHHH
Confidence 34444689998886 567789999999999866431 11238999999999999997 898888888888
Q ss_pred HHHHHHHHhccCCCCC
Q 010916 358 LVSIQALILNAKPFFN 373 (497)
Q Consensus 358 LlSIqsLL~~pnPyfN 373 (497)
+.-+.+.+..+.|.+.
T Consensus 128 iq~l~a~f~~~pP~ys 143 (365)
T KOG2391|consen 128 IQELIAAFSEDPPVYS 143 (365)
T ss_pred HHHHHHHhcCCCcccc
Confidence 8888888887766655
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.55 E-value=0.0024 Score=59.41 Aligned_cols=87 Identities=20% Similarity=0.322 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcE--------EE--EEEEcCCCCCCCCCeee
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGL--------FV--FDCIFPPSYPNEPPSVY 313 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~--------F~--fdI~FP~dYP~~PPkV~ 313 (497)
...|..||..|+..|-+- |....++-..|.-+=.-+.||-|.|-+ |. |.+.+|..||..||.+.
T Consensus 22 ~~~W~~RLKEEy~aLI~Y------v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~ 95 (161)
T PF08694_consen 22 GDLWVQRLKEEYQALIKY------VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIA 95 (161)
T ss_dssp CHHHHHHHHHHHHHHHHH------HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B
T ss_pred HHHHHHHHHHHHHHHHHH------HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCccee
Confidence 478999999999998432 111122222333222345555555533 44 45556999999999998
Q ss_pred eecCCccccccccCCCCeeecccc
Q 010916 314 YYSGGLRLNPNLYDCGKVCLSLLG 337 (497)
Q Consensus 314 F~T~~~ifHPNVy~~GkVCLslL~ 337 (497)
.-.-.+ --.-.|..|+|||++-.
T Consensus 96 lPeLdG-KTaKMYRGGkIClt~HF 118 (161)
T PF08694_consen 96 LPELDG-KTAKMYRGGKICLTDHF 118 (161)
T ss_dssp -GGGTT-T-SSBCCCCBB---TTH
T ss_pred ccccCC-chhhhhcCceEeeeccc
Confidence 743100 12345778999998754
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.16 E-value=0.41 Score=43.72 Aligned_cols=97 Identities=16% Similarity=0.347 Sum_probs=63.3
Q ss_pred CeEEEecCCCcceeEEEEEc--CCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccccCCCCe--eeccccC--
Q 010916 265 TIFVRVCEARMELLRAVMIG--PSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKV--CLSLLGT-- 338 (497)
Q Consensus 265 gI~V~p~ednl~~W~~vI~G--P~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy~~GkV--CLslL~T-- 338 (497)
|+.++...+.-..|-+ |.| -+...|....-.+-|.+|+.||..+|-+-|..+.+..- ..|.| |-....+
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~----~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA----DGGPIPNAAEVTQTFD 87 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc----CCCcCCchhcchhhcC
Confidence 5555544333334443 444 34556999999999999999999999988877622110 12334 4443332
Q ss_pred ---cC--CCCCCCccccccchHHHHHHHHHHHh
Q 010916 339 ---WT--GKSTEMWDKNKSTMLQVLVSIQALIL 366 (497)
Q Consensus 339 ---w~--G~~~E~WsP~~STI~qVLlSIqsLL~ 366 (497)
|. .+|...|+|..-+|.+.|.-|...|.
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 22 24678899988899999999887663
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.05 E-value=0.14 Score=43.60 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEE--cCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecC
Q 010916 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMI--GPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSG 317 (497)
Q Consensus 249 KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~--GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~ 317 (497)
.+...|+..|+.--+..+ ..........+.+.+. ....+.-....+.+.|.||++||..||.|...+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 467788888887665544 2223334445566662 2233444556899999999999999999998775
No 32
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.52 E-value=0.11 Score=48.04 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=56.9
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcE--------EEEEEE--cCCCCCCCCCee
Q 010916 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGL--------FVFDCI--FPPSYPNEPPSV 312 (497)
Q Consensus 243 ~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~--------F~fdI~--FP~dYP~~PPkV 312 (497)
-...|.+||..|++.|-+- |+-..++-..|.-+=.-++||-|-|.+ |.|+|. +|-.||...|.+
T Consensus 24 d~~~wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapei 97 (167)
T KOG3357|consen 24 DGDLWVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEI 97 (167)
T ss_pred cchHHHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccc
Confidence 3567999999999998542 222333444555444668888888765 445554 599999999987
Q ss_pred eeecCCccccccccCCCCeeecccc
Q 010916 313 YYYSGGLRLNPNLYDCGKVCLSLLG 337 (497)
Q Consensus 313 ~F~T~~~ifHPNVy~~GkVCLslL~ 337 (497)
..---.+ ----.|..|+|||.--.
T Consensus 98 alpeldg-ktakmyrggkiclt~hf 121 (167)
T KOG3357|consen 98 ALPELDG-KTAKMYRGGKICLTDHF 121 (167)
T ss_pred cccccCc-hhhhhhcCceEeecccc
Confidence 6532100 01234678999997543
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.34 E-value=0.82 Score=38.56 Aligned_cols=27 Identities=19% Similarity=0.467 Sum_probs=23.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeeecC
Q 010916 291 HDGLFVFDCIFPPSYPNEPPSVYYYSG 317 (497)
Q Consensus 291 eGG~F~fdI~FP~dYP~~PPkV~F~T~ 317 (497)
+.-.+.+.|.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988765
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=77.72 E-value=3.2 Score=39.51 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=47.2
Q ss_pred EEEEcCCCCCCCCCeeeeecCCccc-cccccCC-----CCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhc
Q 010916 297 FDCIFPPSYPNEPPSVYYYSGGLRL-NPNLYDC-----GKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN 367 (497)
Q Consensus 297 fdI~FP~dYP~~PPkV~F~T~~~if-HPNVy~~-----GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~ 367 (497)
+.|.|+..||..+|.|.+.-....- +|+++.. ..+||..-. | ..|.+.. ++..+|..|+.-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~-~-----~e~~~~~-g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP-W-----SEWRPSW-GPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC-H-----HHhhhcc-CHHHHHHHHHHHHHH
Confidence 5689999999999987776542222 4777665 679996654 4 5788988 898888888876643
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=62.68 E-value=19 Score=37.41 Aligned_cols=92 Identities=13% Similarity=0.287 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
....++|.+|+..|..+.. +.+. ..+++...+..+..- .-.-.+.|.+|.+||..||.+..--+
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P------- 161 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLP------- 161 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TT-------
T ss_pred cHHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCC-------
Confidence 5567899999999987654 3332 245778888888732 24567899999999999997543332
Q ss_pred ccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhcc
Q 010916 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNA 368 (497)
Q Consensus 325 Vy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~p 368 (497)
+.+. ..|.+..+++..|+..++..|..-
T Consensus 162 --------~~~~--------~~w~~~~ssL~~v~~qF~~~le~l 189 (291)
T PF09765_consen 162 --------IPFS--------LSWSPSQSSLKDVVQQFQEALESL 189 (291)
T ss_dssp --------S-HH--------HHHHCHT-SHHHHHHHHHHHHHHT
T ss_pred --------cchh--------hhhcccccCHHHHHHHHHHHHHHH
Confidence 1111 378886669999988888877543
No 36
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=57.39 E-value=46 Score=35.51 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCCCCCCCcEEEEE-EEcCCCCCCCCCe--eeeecCCccccccccCCCCeeeccccCcCCCCCCCccccccc
Q 010916 285 PSGTPYHDGLFVFD-CIFPPSYPNEPPS--VYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKST 353 (497)
Q Consensus 285 P~gTPYeGG~F~fd-I~FP~dYP~~PPk--V~F~T~~~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~ST 353 (497)
|...||+|.+|.+. -..+...+.-|+. .-+-++.+++||| |--.+. .|-|+.++
T Consensus 237 p~cap~QGkV~s~~~~~~~~~~~~y~~~~~~gyg~~~Gl~g~N-------CrH~~~--------p~~~Gi~~ 293 (361)
T PF06152_consen 237 PSCAPWQGKVYSLSGGGRPGKDGKYPSLSDTGYGTPAGLFGPN-------CRHSLY--------PFIPGIST 293 (361)
T ss_pred CCCcCcCCEEEEeccCCCCCCCCCCCchhhccccccCCCcccC-------CCCccc--------CCCCCCCC
Confidence 67789999999332 1112222222332 2344566799999 776665 57777643
No 37
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=38.04 E-value=9.5 Score=30.51 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhcCc
Q 010916 470 KLGQMMKILVNNFTRNGS 487 (497)
Q Consensus 470 ~l~~~~~~L~~~F~~~G~ 487 (497)
++.|+.+.|++.|+.|||
T Consensus 4 ~~~Gi~~~lVd~F~~mGF 21 (55)
T PF09288_consen 4 ALYGIDKDLVDQFENMGF 21 (55)
T ss_dssp S----SHHHHHHHHHHT-
T ss_pred HHcCCCHHHHHHHHHcCC
Confidence 567999999999999999
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=37.14 E-value=1e+02 Score=36.34 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEE-EEEEEcCCCCCC-CCCeeeeecC
Q 010916 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLF-VFDCIFPPSYPN-EPPSVYYYSG 317 (497)
Q Consensus 248 ~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F-~fdI~FP~dYP~-~PPkV~F~T~ 317 (497)
.+-|..|+.-|-..-+ .+.++-..---....+.+.||-- +=.|-+| ++.|.||.+||. .||+++|..+
T Consensus 422 pQnLgeE~S~Ig~k~~-nV~fEkidva~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVKIR-NVNFEKIDVADRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhcccc-ccceEeeccccceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4556677766644332 34333222122234455565543 2234344 678899999998 6899999754
No 39
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=37.02 E-value=25 Score=39.80 Aligned_cols=53 Identities=25% Similarity=0.529 Sum_probs=38.7
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCeeeeecCCccccccccCCCCeeeccccCcCCC
Q 010916 288 TPYHDGLFVFDCIFPPSYPN---EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGK 342 (497)
Q Consensus 288 TPYeGG~F~fdI~FP~dYP~---~PPkV~F~T~~~ifHPNVy~~GkVCLslL~Tw~G~ 342 (497)
.||.=|.|-+ +.+|+.||+ .-|-+.|.|++++-+-+-. --.||..|-..|.|.
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~TpTllaGDrsl-~~vIaHEIAHSWtGN 303 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPTLLAGDRSL-VDVIAHEIAHSWTGN 303 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecchhhcCCcch-hhHHHHHhhhhhccc
Confidence 3677788775 457999997 6899999998654333221 235899999999985
No 40
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.87 E-value=22 Score=38.82 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=12.9
Q ss_pred cCCCCCCCccccCCCCCCC
Q 010916 79 KIPNSSNSELSYHDEDDND 97 (497)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~ 97 (497)
-+.+|+-|+.+||+||+++
T Consensus 263 ~sv~~~ss~~edD~Dddd~ 281 (514)
T KOG3130|consen 263 CSVNGSSSYHEDDDDDDDD 281 (514)
T ss_pred ccccCCCCccccccccccc
Confidence 4578888887777665443
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=36.12 E-value=78 Score=33.79 Aligned_cols=44 Identities=23% Similarity=0.545 Sum_probs=34.6
Q ss_pred cceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccc
Q 010916 275 MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNL 325 (497)
Q Consensus 275 l~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNV 325 (497)
.+.++..| ||.|-..+-+|.|-..||..||-+.|... --|+|..
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD-~~F~pd~ 96 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGED-DNFLPDP 96 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCC-cCcCCCh
Confidence 44555555 59999999999999999999999999632 1588853
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=35.58 E-value=41 Score=32.77 Aligned_cols=26 Identities=31% Similarity=0.665 Sum_probs=23.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCeeeeec
Q 010916 291 HDGLFVFDCIFPPSYPNEPPSVYYYS 316 (497)
Q Consensus 291 eGG~F~fdI~FP~dYP~~PPkV~F~T 316 (497)
+.|.|.|.=.||--||.+||.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 46999999999999999999999974
No 43
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=34.93 E-value=45 Score=30.86 Aligned_cols=26 Identities=35% Similarity=0.754 Sum_probs=23.5
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeeeeec
Q 010916 291 HDGLFVFDCIFPPSYP-NEPPSVYYYS 316 (497)
Q Consensus 291 eGG~F~fdI~FP~dYP-~~PPkV~F~T 316 (497)
+.|.|.|.-.+|-.|| ..||.|+|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3589999999999999 9999999974
No 44
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=27.95 E-value=86 Score=29.74 Aligned_cols=59 Identities=17% Similarity=0.394 Sum_probs=42.4
Q ss_pred HHHhcHHHHHHHHHHHhcCC-ccccc-cccCCCCcccccCccCCHHHHHHHHHHHHHHHHHHHhcCc
Q 010916 423 HFRNHAHDILVACKAYMEGA-VVGHV-NIKNGNPEVDQVKWSSSKEFKDKLGQMMKILVNNFTRNGS 487 (497)
Q Consensus 423 HF~~~~~~Il~~~~~~~~ga-~~g~~-~~~~~~~~~~~~~~~~s~~fk~~l~~~~~~L~~~F~~~G~ 487 (497)
+++.|+..||.+ -|++|. -++.+ +..||..+ -.+....|..+-..+...++++|+++|+
T Consensus 50 WwY~RaASilRk--iyi~gpvGi~rL~t~YGg~k~----rG~rP~~~~~gsgsI~RkilqqLE~~G~ 110 (147)
T COG2238 50 WWYVRAASILRK--IYIDGPVGIERLRTAYGGRKN----RGSRPEKFRKGSGSIIRKVLQQLEKAGL 110 (147)
T ss_pred hHHHHHHHHHHH--HHhcCchhHHHHHHHHCcccc----CCCCchhhhcCCchHHHHHHHHHHHCCc
Confidence 677888888886 488775 34443 25565544 2235567888888899999999999998
No 45
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=25.58 E-value=41 Score=37.12 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=8.1
Q ss_pred HhcHHHHHHHHHHH
Q 010916 425 RNHAHDILVACKAY 438 (497)
Q Consensus 425 ~~~~~~Il~~~~~~ 438 (497)
++.+-.++.+|++|
T Consensus 433 rELGL~mA~r~~ay 446 (458)
T PF10446_consen 433 RELGLEMAGRFRAY 446 (458)
T ss_pred HHHHHHHhhhhhhc
Confidence 33555555666666
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.27 E-value=87 Score=29.69 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.8
Q ss_pred CcEEEEEEEcCCCCC-----CCCCeeeeec
Q 010916 292 DGLFVFDCIFPPSYP-----NEPPSVYYYS 316 (497)
Q Consensus 292 GG~F~fdI~FP~dYP-----~~PPkV~F~T 316 (497)
.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 589999999999999 8999999974
No 47
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=24.21 E-value=1.5e+02 Score=29.82 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEEEEcCCCCCCCCCeeeee
Q 010916 294 LFVFDCIFPPSYPNEPPSVYYY 315 (497)
Q Consensus 294 ~F~fdI~FP~dYP~~PPkV~F~ 315 (497)
.|.+.+.++.+||..||.+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7899999999999999999443
No 48
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=24.04 E-value=39 Score=40.60 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=4.9
Q ss_pred cHHHHHHHHHH
Q 010916 394 NDDAFIYSLKT 404 (497)
Q Consensus 394 Ne~vr~~t~kt 404 (497)
|+.+|..++|+
T Consensus 622 nEiTRl~AvkA 632 (1233)
T KOG1824|consen 622 NEITRLTAVKA 632 (1233)
T ss_pred chhHHHHHHHH
Confidence 44444444443
No 49
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=23.36 E-value=81 Score=33.64 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.9
Q ss_pred CcEEEEEEEcCCCCCCCCCeeeeec
Q 010916 292 DGLFVFDCIFPPSYPNEPPSVYYYS 316 (497)
Q Consensus 292 GG~F~fdI~FP~dYP~~PPkV~F~T 316 (497)
+-.|.+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3457788899999999999999998
Done!