Query 010916
Match_columns 497
No_of_seqs 332 out of 1689
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ceg_A Baculoviral IAP repeat- 100.0 5.6E-52 1.9E-56 421.3 22.9 273 204-486 27-315 (323)
2 1yh2_A HSPC150 protein similar 100.0 1.9E-38 6.6E-43 295.2 17.1 165 244-421 2-166 (169)
3 3h8k_A Ubiquitin-conjugating e 100.0 9.5E-38 3.2E-42 288.4 19.0 152 245-426 2-160 (164)
4 2ucz_A UBC7, ubiquitin conjuga 100.0 1.2E-37 4.1E-42 288.1 18.7 152 245-426 3-161 (165)
5 2ayv_A Ubiquitin-conjugating e 100.0 1.1E-37 3.8E-42 289.8 17.7 125 243-379 18-142 (166)
6 2pwq_A Ubiquitin conjugating e 100.0 1.6E-38 5.5E-43 307.1 12.1 187 242-442 19-207 (216)
7 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.6E-37 5.6E-42 289.4 17.4 123 245-379 3-125 (169)
8 2c4o_A Ubiquitin-conjugating e 100.0 2.6E-37 8.8E-42 286.9 18.1 126 242-379 15-140 (165)
9 3rz3_A Ubiquitin-conjugating e 100.0 3.4E-37 1.2E-41 290.2 19.1 133 242-379 3-142 (183)
10 1z2u_A Ubiquitin-conjugating e 100.0 2.2E-37 7.5E-42 282.4 16.9 124 244-379 2-125 (150)
11 4gpr_A Ubiquitin-conjugating e 100.0 3.1E-37 1E-41 281.9 17.8 124 244-379 2-125 (151)
12 1zdn_A Ubiquitin-conjugating e 100.0 2.2E-37 7.5E-42 285.0 16.2 125 242-378 9-133 (158)
13 2e2c_A Ubiquitin conjugating e 100.0 6.3E-37 2.2E-41 281.2 18.6 124 244-379 7-130 (156)
14 2c2v_B Ubiquitin-conjugating e 100.0 1.5E-37 5E-42 285.1 14.1 123 245-379 4-126 (154)
15 2r0j_A Ubiquitin carrier prote 100.0 2.6E-37 9E-42 281.8 15.6 120 248-379 3-122 (149)
16 2aak_A UBC1, ubiquitin conjuga 100.0 6E-37 2.1E-41 280.0 16.7 123 245-379 3-125 (152)
17 2awf_A Ubiquitin-conjugating e 100.0 4E-37 1.4E-41 287.4 15.5 132 244-380 15-153 (172)
18 1jat_A Ubiquitin-conjugating e 100.0 3.8E-37 1.3E-41 282.4 14.5 123 246-380 5-127 (155)
19 3rcz_B SUMO-conjugating enzyme 100.0 7E-37 2.4E-41 283.7 16.3 128 242-379 6-138 (163)
20 1fxt_A Ubiquitin-conjugating e 100.0 6.6E-37 2.3E-41 278.9 14.8 142 247-425 2-145 (149)
21 3fn1_B NEDD8-conjugating enzym 100.0 2.2E-36 7.4E-41 280.3 16.2 131 242-379 10-142 (167)
22 1i7k_A Ubiquitin-conjugating e 100.0 2.8E-36 9.5E-41 283.8 17.1 145 244-426 28-172 (179)
23 3bzh_A Ubiquitin-conjugating e 100.0 3.8E-36 1.3E-40 286.2 17.8 123 245-379 47-169 (194)
24 1yrv_A Ubiquitin-conjugating l 100.0 2.4E-36 8E-41 281.7 15.7 124 245-378 22-146 (169)
25 2gjd_A Ubiquitin-conjugating e 100.0 3.9E-36 1.3E-40 276.4 16.1 125 245-379 3-132 (157)
26 2bep_A Ubiquitin-conjugating e 100.0 9.8E-36 3.4E-40 274.1 17.2 123 244-378 6-132 (159)
27 3k9o_A Ubiquitin-conjugating e 100.0 2.3E-36 7.9E-41 288.0 12.4 146 246-405 5-154 (201)
28 2f4z_A Tgtwinscan_2721 - E2 do 100.0 6.8E-36 2.3E-40 284.2 15.5 124 243-378 29-166 (193)
29 2grr_A Ubiquitin-conjugating e 100.0 1.2E-35 4E-40 274.3 16.2 126 244-379 5-135 (161)
30 1wzv_A Ubiquitin-conjugating e 100.0 9.3E-36 3.2E-40 273.0 15.4 122 246-379 4-126 (155)
31 2h2y_A Ubiquitin-conjugating e 100.0 5.2E-35 1.8E-39 263.5 16.6 116 244-369 18-134 (136)
32 1y8x_A Ubiquitin-conjugating e 100.0 5.6E-35 1.9E-39 269.9 16.6 138 245-422 5-143 (160)
33 2fo3_A Ubiquitin-conjugating e 100.0 3.1E-35 1.1E-39 261.2 14.0 116 245-370 5-121 (125)
34 3e46_A Ubiquitin-conjugating e 100.0 2.2E-35 7.4E-40 291.3 14.1 148 244-405 55-206 (253)
35 2y9m_A Ubiquitin-conjugating e 100.0 2.5E-34 8.6E-39 268.3 18.5 146 244-425 4-164 (172)
36 2nvu_C NEDD8-conjugating enzym 100.0 9.5E-35 3.3E-39 273.4 15.4 121 243-378 23-144 (180)
37 1tte_A Ubiquitin-conjugating e 100.0 1.8E-35 6.2E-40 285.6 10.7 120 247-378 3-124 (215)
38 1c4z_D UBCH7, ubiquitin conjug 100.0 5.3E-35 1.8E-39 267.7 12.2 146 247-429 3-149 (154)
39 2onu_A Ubiquitin-conjugating e 100.0 7.6E-35 2.6E-39 266.9 9.5 118 247-379 3-122 (152)
40 2a7l_A Hypothetical ubiquitin- 100.0 3.7E-34 1.3E-38 258.6 11.3 108 248-365 24-135 (136)
41 3o2u_A NEDD8-conjugating enzym 100.0 4.8E-34 1.7E-38 270.6 12.4 140 242-421 25-171 (190)
42 2z5d_A Ubiquitin-conjugating e 100.0 4.3E-34 1.5E-38 269.1 11.9 119 245-379 24-144 (179)
43 4ddg_A Ubiquitin-conjugating e 100.0 5.3E-33 1.8E-37 289.2 20.7 169 245-432 2-170 (399)
44 2a4d_A Ubiquitin-conjugating e 100.0 1.9E-33 6.4E-38 260.5 15.4 128 243-380 22-155 (160)
45 2hlw_A Ubiquitin-conjugating e 100.0 2E-33 6.9E-38 262.4 14.5 148 223-380 12-165 (170)
46 2q0v_A Ubiquitin-conjugating e 100.0 3.5E-33 1.2E-37 257.5 15.2 126 242-380 17-149 (156)
47 1yf9_A Ubiquitin carrier prote 100.0 1.1E-33 3.8E-38 264.2 10.8 118 246-379 12-131 (171)
48 1jat_B Ubiquitin-conjugating e 100.0 5.7E-33 1.9E-37 250.4 12.2 123 244-379 4-133 (138)
49 4ds2_A Ubiquitin-conjugating e 100.0 8.3E-33 2.8E-37 256.6 11.7 141 246-421 8-163 (167)
50 2f4w_A Ubiquitin-conjugating e 100.0 5.4E-32 1.8E-36 256.0 17.1 120 242-370 10-129 (187)
51 1zuo_A Hypothetical protein LO 100.0 2E-32 6.9E-37 258.9 12.0 144 242-406 23-182 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 7.2E-23 2.5E-27 190.4 3.4 102 244-358 30-143 (172)
53 3r3q_A Suppressor protein STP2 99.6 7.6E-16 2.6E-20 143.0 9.9 115 248-370 30-159 (162)
54 3kpa_A Probable ubiquitin fold 99.5 4.7E-15 1.6E-19 135.7 3.2 86 244-336 32-127 (168)
55 3obq_A Tumor susceptibility ge 99.2 2.4E-11 8.1E-16 111.2 10.3 109 250-371 24-142 (146)
56 2ebm_A RWD domain-containing p 94.8 0.27 9.3E-06 42.4 11.0 70 246-317 10-79 (128)
57 2day_A Ring finger protein 25; 93.5 0.61 2.1E-05 40.1 10.7 69 249-317 11-83 (128)
58 2yz0_A Serine/threonine-protei 91.1 2.6 9E-05 36.6 11.7 70 246-317 10-86 (138)
59 1ukx_A GCN2, GCN2 EIF2alpha ki 89.0 4 0.00014 35.2 11.1 71 244-316 8-86 (137)
60 3zqs_A E3 ubiquitin-protein li 84.1 5.9 0.0002 37.4 10.0 88 249-370 4-91 (186)
61 2ebk_A RWD domain-containing p 81.8 3.4 0.00012 35.5 6.9 67 249-316 10-79 (128)
62 2daw_A RWD domain containing p 78.9 6.7 0.00023 35.2 8.1 68 245-317 13-99 (154)
63 2dax_A Protein C21ORF6; RWD do 70.2 2.7 9.3E-05 37.4 3.1 24 294-317 74-97 (152)
No 1
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=5.6e-52 Score=421.29 Aligned_cols=273 Identities=33% Similarity=0.614 Sum_probs=230.0
Q ss_pred hhHHHHHHHHHhhhccccccccCCCC--------CceecccccCCCCCChhHHHHHHHHHHHHHhcCCC----CeEEEec
Q 010916 204 EEKEESRVMANIQGFKQFDTVDDFSD--------HHYNRMGFLGEEKPPKNWAKKIQEEWKILEKNLPD----TIFVRVC 271 (497)
Q Consensus 204 ~~~~~~~~~~k~~~fk~fd~v~~~sd--------Hhy~~~~~~~~~~~s~~a~KRL~kElk~L~k~~p~----gI~V~p~ 271 (497)
+++.-.+.++. .+|++|+.+.+.+| |||.+.........+..+.+||++|++.|++++|+ ++++.+.
T Consensus 27 ~~~~y~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ 105 (323)
T 3ceg_A 27 LEEKYVAVMKK-LQFDTFEMVSEDEDGKLGFKVNYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCD 105 (323)
T ss_dssp HHHHHHHHHHT-TSEEEECCEEECTTSCEEESSCCTTHHHHHTCCCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEE
T ss_pred HHHHHHHHHHH-hcCceeeecccccccccccccchHHHhhhhccCCCCCHHHHHHHHHHHHHHHhCCCCCcccceeeccc
Confidence 34444444333 35999999887655 67765432222245788999999999999999887 4678889
Q ss_pred CCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCC---ccccccccCCCCeeeccccCcCCCCCCCcc
Q 010916 272 EARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGG---LRLNPNLYDCGKVCLSLLGTWTGKSTEMWD 348 (497)
Q Consensus 272 ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~---~ifHPNVy~~GkVCLslL~Tw~G~~~E~Ws 348 (497)
++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++ .|||||||.+|+|||++|++|.|.+.+.|+
T Consensus 106 ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~Ws 185 (323)
T 3ceg_A 106 EERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWN 185 (323)
T ss_dssp SSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCC
T ss_pred CCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCC
Confidence 99999999999999999999999999999999999999999999974 399999999999999999999998889999
Q ss_pred ccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHH-HHHHHhcCCcchHHHHHHHHHHhc
Q 010916 349 KNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLK-TMMYTLRKPPKHFEDLVAMHFRNH 427 (497)
Q Consensus 349 P~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~k-tm~~~L~~pP~~Fe~~V~~HF~~~ 427 (497)
|++++|++||++||+||.+++|++++|++..+++.......++.|+++++.++++ +|.++|++||..|+++|+.||+.+
T Consensus 186 Pa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~~~l~~Pp~~f~~~i~~hF~~~ 265 (323)
T 3ceg_A 186 PQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLK 265 (323)
T ss_dssp TTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCTTTHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHHHHHHHHHhhHHHHhCCCcccHHHHHHHHHHh
Confidence 9987899999999999999999999999998777777788899999999999999 588999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccccccCCCCcccccCccCCHHHHHHHHHHHHHHHHHHHhcC
Q 010916 428 AHDILVACKAYMEGAVVGHVNIKNGNPEVDQVKWSSSKEFKDKLGQMMKILVNNFTRNG 486 (497)
Q Consensus 428 ~~~Il~~~~~~~~ga~~g~~~~~~~~~~~~~~~~~~s~~fk~~l~~~~~~L~~~F~~~G 486 (497)
+..|+++|++|+++++.... +............+|.+.+..|.++|.++-
T Consensus 266 ~~~i~~~~~~w~~e~~~~~~---------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 315 (323)
T 3ceg_A 266 RVEIMAQCEEWIADIQQYSS---------DKRVGRTMSHHAAALKRHTAQLREELLKLP 315 (323)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhhhhcc---------ccccchhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999986543221 111223345566789999999999999873
No 2
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-38 Score=295.18 Aligned_cols=165 Identities=25% Similarity=0.452 Sum_probs=134.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
+..+.+||++|+++|++++|.||+|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP--IYHP 79 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecC--Cccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHH
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLK 403 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~k 403 (497)
||+.+|+|||++|++|. .+.|+|++ +|.+||++||+||.+|+| ++|++..++.. .......|++.++.++.+
T Consensus 80 Nv~~~G~iCl~iL~~~~---~~~W~p~~-~i~~vL~si~~ll~~p~~--~~p~n~~aa~~--~~~~~~~y~~~~r~~~~~ 151 (169)
T 1yh2_A 80 NIDSAGRICLDVLKLPP---KGAWRPSL-NIATVLTSIQLLMSEPNP--DDPLMADISSE--FKYNKPAFLKNARQWTEK 151 (169)
T ss_dssp TBCTTCBBCCGGGSCTT---TSCCCTTS-CHHHHHHHHHHHHHSCCT--TSCSCHHHHHH--HHHCHHHHHHHHHHHHHH
T ss_pred cCCcCCeEecccccCCc---ccCCCCCC-cHHHHHHHHHHHHhCCCC--cchHhHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence 99999999999998753 36899998 999999999999999998 88987754221 223345666666666655
Q ss_pred HHHHHhcCCcchHHHHHH
Q 010916 404 TMMYTLRKPPKHFEDLVA 421 (497)
Q Consensus 404 tm~~~L~~pP~~Fe~~V~ 421 (497)
++ ..++...+++.|+
T Consensus 152 ~a---~~~~~~~~~~~~~ 166 (169)
T 1yh2_A 152 HA---RQKQKADEEEMLD 166 (169)
T ss_dssp HS---CCC----------
T ss_pred Hc---cccccCCHHHHhh
Confidence 43 2344455555544
No 3
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=9.5e-38 Score=288.35 Aligned_cols=152 Identities=22% Similarity=0.405 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCC-CcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ed-nl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
..+.|||++|+++|+++++.||++.+.++ |++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCE--MFHP 79 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CCCT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCC--CccC
Confidence 35789999999999999999999998765 99999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcCC------CCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHH
Q 010916 324 NLYDCGKVCLSLLGTWTG------KSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDA 397 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G------~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~v 397 (497)
||+.+|+|||++|++|.+ .+.+.|+|++ +|.+||++||+||.+|+| ++|++..+
T Consensus 80 NV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~-ti~~vL~~i~~ll~~pn~--~~p~n~~a----------------- 139 (164)
T 3h8k_A 80 NIYPDGRVCISILHAPGDDPMGYESSAERWSPVQ-SVEKILLSVVSMLAEPND--ESGANVDA----------------- 139 (164)
T ss_dssp TBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTC-CHHHHHHHHHHHHHSCCC--SSCSSHHH-----------------
T ss_pred CCCCCCcEeeecccCcccccccccccccCCCCCC-cHHHHHHHHHHHHcCCCC--CCccCHHH-----------------
Confidence 999999999999998753 3458999998 999999999999999998 77765532
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHh
Q 010916 398 FIYSLKTMMYTLRKPPKHFEDLVAMHFRN 426 (497)
Q Consensus 398 r~~t~ktm~~~L~~pP~~Fe~~V~~HF~~ 426 (497)
..++++.++.|++.|+++.++
T Consensus 140 --------a~~~~~~~~~f~~~~~~~~~~ 160 (164)
T 3h8k_A 140 --------SKMWRDDREQFYKIAKQIVQK 160 (164)
T ss_dssp --------HHHHHHCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHCHHHHHHHHHHHHHH
Confidence 234566667777766665443
No 4
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-37 Score=288.14 Aligned_cols=152 Identities=25% Similarity=0.454 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecC-CCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCE-ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~e-dnl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
..+.+||++|+++|++++++||++.+.+ +|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ +|||
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 80 (165)
T 2ucz_A 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS--ILHP 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CSCT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC--CccC
Confidence 4688999999999999999999999865 799999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcCC------CCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHH
Q 010916 324 NLYDCGKVCLSLLGTWTG------KSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDA 397 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G------~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~v 397 (497)
||+.+|+|||++|++|.+ .+.+.|+|++ +|.+||++||+||.+|+| ++|++..+
T Consensus 81 Nv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~~a----------------- 140 (165)
T 2ucz_A 81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQ-SVEKILLSVMSMLSEPNI--ESGANIDA----------------- 140 (165)
T ss_dssp TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTC-CHHHHHHHHHHHHHSCCG--GGCCCHHH-----------------
T ss_pred CCCCCCcEeehhhCCccccccccCCCCCCCCCcC-cHHHHHHHHHHHHhCCCC--CCchhHHH-----------------
Confidence 999999999999987642 2368999998 999999999999999887 77765421
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHh
Q 010916 398 FIYSLKTMMYTLRKPPKHFEDLVAMHFRN 426 (497)
Q Consensus 398 r~~t~ktm~~~L~~pP~~Fe~~V~~HF~~ 426 (497)
..++++.++.|++.|+++.++
T Consensus 141 --------a~~~~~~~~~y~~~v~~~~~~ 161 (165)
T 2ucz_A 141 --------CILWRDNRPEFERQVKLSILK 161 (165)
T ss_dssp --------HHHHHTTHHHHHHHHHHHHHH
T ss_pred --------HHHHHHCHHHHHHHHHHHHHH
Confidence 234666777777776665543
No 5
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-37 Score=289.78 Aligned_cols=125 Identities=29% Similarity=0.572 Sum_probs=118.3
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccc
Q 010916 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (497)
Q Consensus 243 ~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifH 322 (497)
....+.+||++|+++|+++++.||+|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +||
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~H 95 (166)
T 2ayv_A 18 YFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTK--IYH 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CCB
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccC--CcC
Confidence 355688999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 323 PNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 323 PNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
|||+.+|+|||++|+ +.|+|++ +|.+||++||+||.+|+| ++|++..
T Consensus 96 PNI~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~pn~--~~Pln~~ 142 (166)
T 2ayv_A 96 PNINSQGAICLDILK-------DQWSPAL-TISKVLLSISSLLTDPNP--DDPLVPE 142 (166)
T ss_dssp TTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHH
T ss_pred CcCCCCCeEEccccc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CchhhHH
Confidence 999999999999998 7999998 999999999999999998 7886653
No 6
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.6e-38 Score=307.09 Aligned_cols=187 Identities=20% Similarity=0.332 Sum_probs=131.4
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccc
Q 010916 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRL 321 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~if 321 (497)
.....+.+||++|+++|++++|+||+|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ ||
T Consensus 19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~--i~ 96 (216)
T 2pwq_A 19 FQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTK--IW 96 (216)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CC
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCC--Cc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccccc-CCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHH
Q 010916 322 NPNLY-DCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIY 400 (497)
Q Consensus 322 HPNVy-~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~ 400 (497)
||||+ .+|+|||++|+ +.|+|++ +|.+||++||+||.+|+| ++|++..++. ........|++.++.+
T Consensus 97 HPNI~~~~G~ICL~iL~-------~~WsP~~-ti~~VL~sI~sLL~~Pnp--~dPln~eaa~--~~~~d~~~f~~~ar~~ 164 (216)
T 2pwq_A 97 HPNISSQTGAICLDVLK-------NEWSPAL-TIRTALLSIQALLSDPQP--DDPQDAEVAK--MYKENHALFVKTASVW 164 (216)
T ss_dssp BTTBCTTTCBBCCHHHH-------HHCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHHHHH--HHHHCHHHHHHHHHHH
T ss_pred CCCCcCCCCEEEchhhc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCcccHHHHH--HHHHCHHHHHHHHHHH
Confidence 99999 49999999998 6899998 999999999999999999 8898765422 1223345666666666
Q ss_pred HHHHHHHH-hcCCcchHHHHHHHHHHhcHHHHHHHHHHHhcCC
Q 010916 401 SLKTMMYT-LRKPPKHFEDLVAMHFRNHAHDILVACKAYMEGA 442 (497)
Q Consensus 401 t~ktm~~~-L~~pP~~Fe~~V~~HF~~~~~~Il~~~~~~~~ga 442 (497)
+.+.+..- ........++++..+|.+.+...+..|..|-...
T Consensus 165 t~~ya~~~~~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~ 207 (216)
T 2pwq_A 165 TKTFATGPKEEPREVIIKKITEMGFSEDQAKNALIKANWNETL 207 (216)
T ss_dssp HHHHSCCC-----------------------------------
T ss_pred HHHhcCCCcccchhhHHHHHHHcCCCHHHHHHHHHHcCCchHH
Confidence 65543110 0001234556666677777777777777776433
No 7
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-37 Score=289.44 Aligned_cols=123 Identities=28% Similarity=0.598 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
..+.+||++|++.|++++|+||+|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +||||
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~--i~HPN 80 (169)
T 1ayz_A 3 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE--MFHPN 80 (169)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC--CccCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 325 Vy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
|+.+|+|||++|. +.|+|++ +|.+||++||+||.+|+| ++|++..
T Consensus 81 I~~~G~ICl~iL~-------~~WsP~~-~i~~vL~si~~ll~~Pn~--~~P~n~~ 125 (169)
T 1ayz_A 81 VYANGEICLDILQ-------NRWTPTY-DVASILTSIQSLFNDPNP--ASPANVE 125 (169)
T ss_dssp BCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHTCCCC--SSCSSHH
T ss_pred CCCCCeEeehhhc-------cCCCCcC-cHHHHHHHHHHHHhCCCC--CcHHHHH
Confidence 9999999999998 7899998 999999999999999888 8887663
No 8
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=2.6e-37 Score=286.92 Aligned_cols=126 Identities=28% Similarity=0.550 Sum_probs=119.6
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccc
Q 010916 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRL 321 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~if 321 (497)
...+.+.+||++|+++|+++++.||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|
T Consensus 15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~--i~ 92 (165)
T 2c4o_A 15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR--IY 92 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CC
T ss_pred cCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecC--Cc
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 322 NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 322 HPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
||||+.+|+|||++|+ +.|+|++ +|.+||++||+||.+|+| ++|++..
T Consensus 93 HPnV~~~G~ICl~iL~-------~~W~P~~-ti~~vL~si~~ll~~pn~--~~P~n~~ 140 (165)
T 2c4o_A 93 HPNINSNGSICLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVPE 140 (165)
T ss_dssp BTTBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSHH
T ss_pred CCcCCCCCeEeehhhc-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CccccHH
Confidence 9999999999999998 7999998 999999999999999998 8887664
No 9
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=3.4e-37 Score=290.24 Aligned_cols=133 Identities=25% Similarity=0.441 Sum_probs=117.3
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCeEEE-ecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcc
Q 010916 242 KPPKNWAKKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLR 320 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~p~gI~V~-p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~i 320 (497)
+++..+.|||++|+++|+++++.||++. +.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i 80 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK--M 80 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--C
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCC--C
Confidence 4567789999999999999999999999 678899999999999999999999999999999999999999999999 9
Q ss_pred ccccccCCCCeeeccccCcCCC------CCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 321 LNPNLYDCGKVCLSLLGTWTGK------STEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 321 fHPNVy~~GkVCLslL~Tw~G~------~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
||||||.+|+|||++|++|.+. ..+.|+|++ +|.+||++||+||.+|+| ++|++..
T Consensus 81 ~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~~ 142 (183)
T 3rz3_A 81 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQ-NVRTILLSVISLLNEPNT--FSPANVD 142 (183)
T ss_dssp CCTTBCTTSBBCCTTC--------------CCCCTTC-CHHHHHHHHHHHHHSCCC--SSCSSHH
T ss_pred ccCCCCCCCcEehhhcCcccccccccccccCCCCCcC-cHHHHHHHHHHHHhCCCC--CCcccHH
Confidence 9999999999999999875322 348999998 899999999999999988 7886653
No 10
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=2.2e-37 Score=282.38 Aligned_cols=124 Identities=28% Similarity=0.566 Sum_probs=118.1
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
+..+.+||++|+++|++++++||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR--IYHP 79 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecC--cccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~n~~ 125 (150)
T 1z2u_A 80 NINSNGSICLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVPE 125 (150)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHH
T ss_pred cCCCCCeEeecccc-------CCCCCCC-CHHHHHHHHHHHhhCCCC--CCccCHH
Confidence 99999999999998 7999998 999999999999999998 8887664
No 11
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=3.1e-37 Score=281.93 Aligned_cols=124 Identities=27% Similarity=0.548 Sum_probs=118.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
+..+.|||++|+++|++++|.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HP 79 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTK--VYHP 79 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecC--cccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
||+.+|+|||++|. +.|+|++ +|.+||++|++||.+|+| ++|.+..
T Consensus 80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 125 (151)
T 4gpr_A 80 NINKNGVICLDILK-------DQWSPAL-TLSRVLLSISSLLTDPNP--SDPLDPE 125 (151)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHCCCT--TSCSSHH
T ss_pred eECCCCEEEccccc-------CCCCCCC-cHHHHHHHHHHHhcCCCC--CCchhHH
Confidence 99999999999997 7999998 999999999999999998 7886653
No 12
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-37 Score=285.02 Aligned_cols=125 Identities=27% Similarity=0.545 Sum_probs=119.1
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccc
Q 010916 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRL 321 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~if 321 (497)
..+..+.+||++|+++|++++++||+|.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ +|
T Consensus 9 ~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~ 86 (158)
T 1zdn_A 9 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTK--IF 86 (158)
T ss_dssp CSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CC
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccC--cc
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcc
Q 010916 322 NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378 (497)
Q Consensus 322 HPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~ 378 (497)
||||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+|+| ++|.+.
T Consensus 87 HPnv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~pn~--~~p~n~ 133 (158)
T 1zdn_A 87 HPNVGANGEICVNVLK-------RDWTAEL-GIRHVLLTIKCLLIHPNP--ESALNE 133 (158)
T ss_dssp CTTBCTTSBBCHHHHT-------TTCCTTC-CHHHHHHHHHHHHHSCCG--GGCSSH
T ss_pred cCCCCCCCEEehhhcC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH
Confidence 9999999999999998 7999998 999999999999999998 777655
No 13
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=6.3e-37 Score=281.22 Aligned_cols=124 Identities=24% Similarity=0.392 Sum_probs=118.1
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
+..+.+||++|+++|++++++||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||
T Consensus 7 ~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 84 (156)
T 2e2c_A 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP--CWHP 84 (156)
T ss_dssp CCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC--cccC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 85 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~si~~ll~~pn~--~~p~n~~ 130 (156)
T 2e2c_A 85 NVDQSGNICLDILK-------ENWTASY-DVRTILLSLQSLLGEPNN--ASPLNAQ 130 (156)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHTTSCCC--SSCSCHH
T ss_pred CCccCceEECcccc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCHHHHH
Confidence 99999999999998 7899998 999999999999999988 8887663
No 14
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-37 Score=285.09 Aligned_cols=123 Identities=26% Similarity=0.515 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
..+.+||++|+++|++++++||+|.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +||||
T Consensus 4 ~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPn 81 (154)
T 2c2v_B 4 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK--IYHPN 81 (154)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CCCTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC--cccCc
Confidence 4557999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 325 Vy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
|+.+|+|||++|+ +.|+|++ +|.+||++||+||.+|+| ++|.+..
T Consensus 82 v~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~n~~ 126 (154)
T 2c2v_B 82 VDKLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPNP--DDPLAND 126 (154)
T ss_dssp BCTTCBBCCHHHH-------TSCCTTC-CHHHHHHHHHHHTTSCCC--CCC--CH
T ss_pred CccCCeEEchhcc-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccHH
Confidence 9999999999997 7999998 999999999999999998 8887664
No 15
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.6e-37 Score=281.80 Aligned_cols=120 Identities=30% Similarity=0.616 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccccC
Q 010916 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYD 327 (497)
Q Consensus 248 ~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy~ 327 (497)
.+||++|+++|++++++||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||+.
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv~~ 80 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK--IYHPNIDK 80 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC--CCBTTBCT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccC--CccCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 328 CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 328 ~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
+|+|||++|+ +.|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 81 ~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 122 (149)
T 2r0j_A 81 LGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSSPEP--DDPLDSK 122 (149)
T ss_dssp TCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHHHSCCT--TSCSSCH
T ss_pred CCEEechhcC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCchhHH
Confidence 9999999998 7999998 999999999999999998 8887764
No 16
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=6e-37 Score=280.03 Aligned_cols=123 Identities=31% Similarity=0.618 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
..+.+||++|+++|++++++||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +||||
T Consensus 3 ~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPn 80 (152)
T 2aak_A 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR--MFHPN 80 (152)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC--cccCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 325 Vy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
|+.+|+|||++|. +.|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 81 v~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 125 (152)
T 2aak_A 81 IYADGSICLDILQ-------NQWSPIY-DVAAILTSIQSLLCDPNP--NSPANSE 125 (152)
T ss_dssp BCTTSBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHTSCCT--TSCSSHH
T ss_pred CCCCCEEechhhc-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CccccHH
Confidence 9999999999998 7899998 999999999999999888 8887764
No 17
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=4e-37 Score=287.42 Aligned_cols=132 Identities=22% Similarity=0.411 Sum_probs=112.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecC-CCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCE-ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~e-dnl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifH 322 (497)
+..+.+||+||+++|++++++||+|.+.+ +|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +||
T Consensus 15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~--i~H 92 (172)
T 2awf_A 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE--IWH 92 (172)
T ss_dssp CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CCC
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCC--Ccc
Confidence 56678999999999999999999999865 799999999999999999999999999999999999999999999 999
Q ss_pred ccccCCCCeeeccccCcCC------CCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccC
Q 010916 323 PNLYDCGKVCLSLLGTWTG------KSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKS 380 (497)
Q Consensus 323 PNVy~~GkVCLslL~Tw~G------~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~ 380 (497)
|||+.+|+|||++|++|.+ ...+.|+|++ +|.+||++||+||.+|+| ++|++..+
T Consensus 93 PNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~-ti~~vL~sI~sll~~Pn~--~~p~n~~a 153 (172)
T 2awf_A 93 PNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIH-TVETIMISVISMLADPNG--DSPANVDA 153 (172)
T ss_dssp TTBCTTCBBCCGGGSCC---------CTTSCCTTC-CHHHHHHHHHHHHSCC------------
T ss_pred CCCCCCCcEehhhcCCcccccccccccCCCCCCcC-cHHHHHHHHHHHHHCcCC--CCccCHHH
Confidence 9999999999999987532 2457999998 999999999999998887 88876643
No 18
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=3.8e-37 Score=282.43 Aligned_cols=123 Identities=28% Similarity=0.554 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccc
Q 010916 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNL 325 (497)
Q Consensus 246 ~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNV 325 (497)
.+.+||++|+++|++++++||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv 82 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK--IYHPNI 82 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC--CCBTTB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecc--cccCCC
Confidence 346999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccC
Q 010916 326 YDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKS 380 (497)
Q Consensus 326 y~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~ 380 (497)
+.+|+|||++|. +.|+|++ +|.+||++||+||.+|+| ++|++..+
T Consensus 83 ~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~a 127 (155)
T 1jat_A 83 DRLGRICLDVLK-------TNWSPAL-QIRTVLLSIQALLASPNP--NDPLANDV 127 (155)
T ss_dssp CTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSTTCCTT
T ss_pred CCCCEEEchhhc-------cCCCCCC-CHHHHHHHHHHHHhCCCC--CCcccHHH
Confidence 999999999997 7999998 999999999999999988 89988754
No 19
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=7e-37 Score=283.67 Aligned_cols=128 Identities=27% Similarity=0.535 Sum_probs=117.5
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCeEEEecCC-----CcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeec
Q 010916 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEA-----RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYS 316 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~p~gI~V~p~ed-----nl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T 316 (497)
..+..+.+||+||+++|++++|+||++.+.++ |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t 85 (163)
T 3rcz_B 6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP 85 (163)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 45778999999999999999999999999876 9999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 317 GGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 317 ~~~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
+ ||||||+.+|+|||++|+. .++|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 86 ~--i~HPnV~~~G~iCl~iL~~-----~~~W~p~~-ti~~vL~~i~~ll~~P~~--~~p~n~~ 138 (163)
T 3rcz_B 86 P--LFHPNVYPSGTVCLSILNE-----EEGWKPAI-TIKQILLGIQDLLDDPNI--ASPAQTE 138 (163)
T ss_dssp C--CCSTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHTSCCT--TSCSCHH
T ss_pred C--CccCCCCCCCcEeccccCC-----CCCcCCcC-cHHHHHHHHHHHHhCCCC--CCccCHH
Confidence 9 9999999999999999972 25799998 999999999999999888 8886653
No 20
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=6.6e-37 Score=278.93 Aligned_cols=142 Identities=28% Similarity=0.550 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCC-CcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccc
Q 010916 247 WAKKIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNL 325 (497)
Q Consensus 247 a~KRL~kElk~L~k~~p~gI~V~p~ed-nl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNV 325 (497)
+.+||++|+++|++++++||++.+.++ |++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPni 79 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK--VYHPNI 79 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSC--CCBTTB
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC--CccCCC
Confidence 469999999999999999999999887 99999999999999999999999999999999999999999999 999999
Q ss_pred cC-CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHHH
Q 010916 326 YD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKT 404 (497)
Q Consensus 326 y~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~kt 404 (497)
+. +|+|||++|. +.|+|++ +|.+||++||+||.+|+| ++|.+..+
T Consensus 80 ~~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~a------------------------ 125 (149)
T 1fxt_A 80 SSVTGAICLDILK-------NAWSPVI-TLKSALISLQALLQSPEP--NDPQDAEV------------------------ 125 (149)
T ss_dssp CSSSCCBCCHHHH-------TSCCTTC-CHHHHHHHHHHHHHSCCS--SSCSSHHH------------------------
T ss_pred cCCCCeEeCCcCC-------CCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccHHH------------------------
Confidence 98 9999999998 7899998 999999999999999998 78866532
Q ss_pred HHHHhcCCcchHHHHHHHHHH
Q 010916 405 MMYTLRKPPKHFEDLVAMHFR 425 (497)
Q Consensus 405 m~~~L~~pP~~Fe~~V~~HF~ 425 (497)
..++++.++.|++.|+.+-+
T Consensus 126 -a~~~~~d~~~f~~~a~~~~~ 145 (149)
T 1fxt_A 126 -AQHYLRDRESFNKTAALWTR 145 (149)
T ss_dssp -HHHHHHCSSHHHHHHHHHHH
T ss_pred -HHHHHHCHHHHHHHHHHHHH
Confidence 23455666777776665443
No 21
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=2.2e-36 Score=280.28 Aligned_cols=131 Identities=24% Similarity=0.391 Sum_probs=120.3
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCeEEEe-cCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcc
Q 010916 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRV-CEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLR 320 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~p~gI~V~p-~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~i 320 (497)
...+.+.+||++|+++|++++|+||+|.+ .++++..|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+ +
T Consensus 10 ~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i 86 (167)
T 3fn1_B 10 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTK--I 86 (167)
T ss_dssp CCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSC--C
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCC--c
Confidence 45678899999999999999999999996 567899999988 9999999999999999999999999999999999 9
Q ss_pred ccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhc-cCCCCCCCCccc
Q 010916 321 LNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN-AKPFFNEPGFEK 379 (497)
Q Consensus 321 fHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~-pnPyfNEPg~~~ 379 (497)
|||||+.+|+|||++|++| |...+.|+|++ +|.+||++||+||.+ |+| ++|++..
T Consensus 87 ~HPnv~~~G~iCl~iL~~~-~~~~~~W~p~~-~i~~vl~~i~~ll~~~pn~--~~p~n~e 142 (167)
T 3fn1_B 87 WHPNITETGEICLSLLREH-SIDGTGWAPTR-TLKDVVWGLNSLFTDLLNF--DDPLNIE 142 (167)
T ss_dssp CCSSBCTTCCBCCGGGSBC-SSSTTSBCTTC-CHHHHHHHHHHTTTTTCCS--SSCSCHH
T ss_pred ccCCCCCCCEEechhhccC-CCCCCCCCCcC-cHHHHHHHHHHHHcCCCCC--CcchhHH
Confidence 9999999999999999987 55668999998 999999999999998 587 7886653
No 22
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.8e-36 Score=283.83 Aligned_cols=145 Identities=22% Similarity=0.331 Sum_probs=129.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
+..+.+||++|++.|+++++.||++.+.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ +|||
T Consensus 28 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~HP 105 (179)
T 1i7k_A 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP--CYHP 105 (179)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC--CCST
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecC--CccC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHH
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLK 403 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~k 403 (497)
||+.+|+|||++|. +.|+|++ +|.+||++|++||.+|+| ++|++..+
T Consensus 106 NV~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~Pn~--~~Pln~~a----------------------- 152 (179)
T 1i7k_A 106 NVDTQGNISLDILK-------EKWSALY-DVRTILLSIQSLLGEPNI--DSPLNTHA----------------------- 152 (179)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHHH-----------------------
T ss_pred ccccCCeEEcccCc-------CcCCCCC-CHHHHHHHHHHHHhCCCC--cchhhHHH-----------------------
Confidence 99999999999997 7899998 999999999999999988 78866531
Q ss_pred HHHHHhcCCcchHHHHHHHHHHh
Q 010916 404 TMMYTLRKPPKHFEDLVAMHFRN 426 (497)
Q Consensus 404 tm~~~L~~pP~~Fe~~V~~HF~~ 426 (497)
..++ +.++.|++.|+++.++
T Consensus 153 --a~l~-~d~~~f~~~v~~~v~~ 172 (179)
T 1i7k_A 153 --AELW-KNPTAFKKYLQETYSK 172 (179)
T ss_dssp --HHHT-TSHHHHHHHHHHHHHT
T ss_pred --HHHh-hCHHHHHHHHHHHHHH
Confidence 2345 6777788777665543
No 23
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=3.8e-36 Score=286.16 Aligned_cols=123 Identities=28% Similarity=0.535 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
..+.+||++|+++|++++|+||++.+.++|+++|+++|.||+||||+||+|+|+|.||++||+.||+|+|.|+ +||||
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~HPN 124 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR--IYHCN 124 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCC--Cccce
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 325 Vy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
|+.+|+|||++|. +.|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 125 V~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~~ll~~pnp--~~Pln~~ 169 (194)
T 3bzh_A 125 INSQGVICLDILK-------DNWSPAL-TISKVLLSICSLLTDCNP--ADPLVGS 169 (194)
T ss_dssp BCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHH
T ss_pred ECCCCceechhhh-------ccCCCcC-cHHHHHHHHHHHHhCCCC--ccchhHH
Confidence 9999999999997 7999998 999999999999999998 7887653
No 24
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-36 Score=281.75 Aligned_cols=124 Identities=19% Similarity=0.329 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
..+.+||++|+++|++++++||.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +||||
T Consensus 22 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~HPN 99 (169)
T 1yrv_A 22 GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI--PFHPN 99 (169)
T ss_dssp CHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC--CCCTT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC--CccCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred c-cCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcc
Q 010916 325 L-YDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378 (497)
Q Consensus 325 V-y~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~ 378 (497)
| +.+|+|||++|++ ++.|+|++ +|.+||++||+||.+|+| ++|++.
T Consensus 100 I~~~~G~ICL~iL~~-----~~~WsP~~-ti~~vL~sI~sll~~Pn~--~~Pln~ 146 (169)
T 1yrv_A 100 VDPHTGQPCIDFLDN-----PEKWNTNY-TLSSILLALQVMLSNPVL--ENPVNL 146 (169)
T ss_dssp BCTTTCCBCCHHHHC-----GGGCCTTC-CHHHHHHHHHHHHTSCCT--TSCSCH
T ss_pred ccCCCCeEeehhhcC-----CcCCCCcC-CHHHHHHHHHHHHhCCCC--CCchhH
Confidence 9 8999999999972 36899998 999999999999999888 888665
No 25
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.9e-36 Score=276.42 Aligned_cols=125 Identities=28% Similarity=0.573 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecC-----CCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCE-----ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGL 319 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~e-----dnl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ 319 (497)
..+.+||++|+++|++++|+||++.+.+ +|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-- 80 (157)
T 2gjd_A 3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG-- 80 (157)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT--
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC--
Confidence 3578999999999999999999999875 489999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 320 RLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 320 ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
+|||||+.+|+|||++|+. .+.|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 81 i~HPnv~~~G~iCl~iL~~-----~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 132 (157)
T 2gjd_A 81 FYHPNVYPSGTICLSILNE-----DQDWRPAI-TLKQIVLGVQDLLDSPNP--NSPAQEP 132 (157)
T ss_dssp CCCTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHTSCCT--TCCCCHH
T ss_pred CccCCCCCCCcEeeecccC-----CCCCCCCC-cHHHHHHHHHHHHhCCCC--CCccCHH
Confidence 9999999999999999983 24899998 999999999999998887 8887663
No 26
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=9.8e-36 Score=274.07 Aligned_cols=123 Identities=30% Similarity=0.595 Sum_probs=115.3
Q ss_pred ChhHHHHHHHHHHHHHhc---CCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcc
Q 010916 244 PKNWAKKIQEEWKILEKN---LPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLR 320 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~---~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~i 320 (497)
+..+.+||+||+++|+++ ++.||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +
T Consensus 6 s~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i 83 (159)
T 2bep_A 6 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--I 83 (159)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--C
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC--C
Confidence 346889999999999985 57899999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccccC-CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcc
Q 010916 321 LNPNLYD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378 (497)
Q Consensus 321 fHPNVy~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~ 378 (497)
|||||+. +|+|||++|+ +.|+|++ +|.+||++||+||.+|+| ++|.+.
T Consensus 84 ~HPni~~~~G~iCl~iL~-------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~ 132 (159)
T 2bep_A 84 WHPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDA 132 (159)
T ss_dssp CBTTBCTTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCH
T ss_pred CccCCCCCCCEEeChhhh-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH
Confidence 9999995 9999999998 7899998 999999999999999998 777655
No 27
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=2.3e-36 Score=288.03 Aligned_cols=146 Identities=26% Similarity=0.495 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHHhc---CCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccc
Q 010916 246 NWAKKIQEEWKILEKN---LPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (497)
Q Consensus 246 ~a~KRL~kElk~L~k~---~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifH 322 (497)
.+.+||+||+++|+++ ++.||++.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ |||
T Consensus 5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~H 82 (201)
T 3k9o_A 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--IWH 82 (201)
T ss_dssp TTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCB
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC--ccc
Confidence 4689999999999987 46899999999999999999999999999999999999999999999999999999 999
Q ss_pred ccccC-CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHH
Q 010916 323 PNLYD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYS 401 (497)
Q Consensus 323 PNVy~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t 401 (497)
|||+. +|+|||++|. +.|+|++ +|.+||++||+||.+|+| ++|.+..++. ........|++.++.++
T Consensus 83 Pnv~~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~p~p--~~p~n~~aa~--~~~~~~~~f~~~a~~~~ 150 (201)
T 3k9o_A 83 PNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDAVVAN--QYKQNPEMFKQTARLWA 150 (201)
T ss_dssp TTBCTTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHHHHH--HHHHCHHHHHHHHHHHH
T ss_pred CCCcCCCCeeeCcccc-------cCCCCCC-CHHHHHHHHHHHhcCCCC--CCcccHHHHH--HHHHCHHHHHHHHHHHH
Confidence 99995 9999999997 7999998 999999999999999999 8998776432 22333456777777666
Q ss_pred HHHH
Q 010916 402 LKTM 405 (497)
Q Consensus 402 ~ktm 405 (497)
.+++
T Consensus 151 ~~~a 154 (201)
T 3k9o_A 151 HVYA 154 (201)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6644
No 28
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.8e-36 Score=284.24 Aligned_cols=124 Identities=26% Similarity=0.556 Sum_probs=112.9
Q ss_pred CChhHHHHHHHHHHHHHhcCC-------------CCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCC
Q 010916 243 PPKNWAKKIQEEWKILEKNLP-------------DTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEP 309 (497)
Q Consensus 243 ~s~~a~KRL~kElk~L~k~~p-------------~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~P 309 (497)
.+..+.+||+||+++|+++++ .||+|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++|
T Consensus 29 ~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~P 108 (193)
T 2f4z_A 29 GTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP 108 (193)
T ss_dssp ---CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred CCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCC
Confidence 345688999999999999987 7999999999999999999999999999999999999999999999
Q ss_pred CeeeeecCCcccccccc-CCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcc
Q 010916 310 PSVYYYSGGLRLNPNLY-DCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378 (497)
Q Consensus 310 PkV~F~T~~~ifHPNVy-~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~ 378 (497)
|+|+|.|+ ||||||+ .+|+|||++|+ +.|+|++ +|.+||++||+||.+|+| ++|.+.
T Consensus 109 P~V~F~T~--i~HPNI~~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~sll~~pnp--~~P~n~ 166 (193)
T 2f4z_A 109 PKMKFVTK--IWHPNISSQTGAICLDILK-------HEWSPAL-TIRTALLSIQAMLADPVP--TDPQDA 166 (193)
T ss_dssp CEEEESSC--CCBTTBCTTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHHHSCCT--TSCSCH
T ss_pred CeEEEecC--CccCCCcCCCCEEECcccc-------ccCCCCC-CHHHHHHHHHHHHhCCCC--CCcccH
Confidence 99999999 9999999 59999999998 6899998 999999999999999998 777655
No 29
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.2e-35 Score=274.28 Aligned_cols=126 Identities=26% Similarity=0.490 Sum_probs=116.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecC-----CCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCC
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCE-----ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGG 318 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~e-----dnl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~ 318 (497)
+..+.+||++|+++|++++|+||.+.+.+ +|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 5 ~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~- 83 (161)
T 2grr_A 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP- 83 (161)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC-
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC-
Confidence 35678999999999999999999998864 689999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 319 LRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 319 ~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
+|||||+.+|+|||++|+. .+.|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 84 -i~HPnv~~~G~iCl~iL~~-----~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 135 (161)
T 2grr_A 84 -LFHPNVYPSGTVCLSILEE-----DKDWRPAI-TIKQILLGIQELLNEPNI--QSPAQAE 135 (161)
T ss_dssp -CCSTTBCTTSBBCCGGGCT-----TTTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHH
T ss_pred -cccCCCCCCCeEeehhcCC-----CCCcCCCC-cHHHHHHHHHHHHhCCCC--CCccCHH
Confidence 9999999999999999982 25899998 999999999999998887 8887653
No 30
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=9.3e-36 Score=272.98 Aligned_cols=122 Identities=25% Similarity=0.481 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEE-EecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 246 NWAKKIQEEWKILEKNLPDTIFV-RVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 246 ~a~KRL~kElk~L~k~~p~gI~V-~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
.+.+||++|+++|+++++.||.+ .+.++|+++|+++|. |++|||+||+|+|+|.||++||++||+|+|.|+ +||||
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPn 80 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTK--IYHPN 80 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSC--CCBTT
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCC--CccCc
Confidence 46799999999999999999999 889999999999999 999999999999999999999999999999999 99999
Q ss_pred ccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 325 Vy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
|+.+|+|||++|+ .+.|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 81 V~~~G~iCl~iL~------~~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~ 126 (155)
T 1wzv_A 81 VDENGQICLPIIS------SENWKPCT-KTCQVLEALNVLVNRPNI--REPLRMD 126 (155)
T ss_dssp BCTTCBCCCGGGC------TTTCCTTC-CHHHHHHHHHHHHHSCCS--SSCSSHH
T ss_pred CCCCCeEeecCCC------ccCCCCCC-cHHHHHHHHHHHHhCCCC--CchHHHH
Confidence 9999999999994 17999998 999999999999999888 8887664
No 31
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=5.2e-35 Score=263.50 Aligned_cols=116 Identities=27% Similarity=0.506 Sum_probs=110.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcc-cc
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLR-LN 322 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~i-fH 322 (497)
...+.+||++|+++|++++|.||+|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ + ||
T Consensus 18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~~H 95 (136)
T 2h2y_A 18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK--PPKH 95 (136)
T ss_dssp TTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS--CCCC
T ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCC--CCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999998 6 99
Q ss_pred ccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccC
Q 010916 323 PNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAK 369 (497)
Q Consensus 323 PNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pn 369 (497)
|||+.+|+|||++|+ +.|+|++ +|.+||++||+||.+|+
T Consensus 96 Pnv~~~G~ICl~iL~-------~~WsP~~-ti~~vL~si~sll~~p~ 134 (136)
T 2h2y_A 96 THVYSNGDICLSVLG-------DDYNPSL-SISGLILSIISMLSSAK 134 (136)
T ss_dssp TTBCTTCCBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHSSSC
T ss_pred CcCCCCCEEECcccc-------CCCCCCC-cHHHHHHHHHHHHhCcC
Confidence 999999999999997 7999998 99999999999998775
No 32
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.6e-35 Score=269.86 Aligned_cols=138 Identities=28% Similarity=0.426 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEE-ecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~-p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHP 323 (497)
+.+.+||++|+++| ++|+||++. +.++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+ +|||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HP 79 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM--VYHP 79 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSC--CCBT
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecC--CccC
Confidence 46789999999999 678999999 7889999999988 9999999999999999999999999999999999 9999
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHH
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLK 403 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~k 403 (497)
||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+|+| ++|++..
T Consensus 80 nv~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~Pn~--~~p~n~~------------------------ 125 (160)
T 1y8x_A 80 NIDLEGNVCLNILR-------EDWKPVL-TINSIIYGLQYLFLEPNP--EDPLNKE------------------------ 125 (160)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCHH------------------------
T ss_pred cCCCCCeEEcccch-------hhccCCC-CHHHHHHHHHHHHhCCCC--CCccCHH------------------------
Confidence 99999999999998 7899998 999999999999999888 8886653
Q ss_pred HHHHHhcCCcchHHHHHHH
Q 010916 404 TMMYTLRKPPKHFEDLVAM 422 (497)
Q Consensus 404 tm~~~L~~pP~~Fe~~V~~ 422 (497)
+..++++.++.|++.|++
T Consensus 126 -aa~~~~~~~~~f~~~v~~ 143 (160)
T 1y8x_A 126 -AAEVLQNNRRLFEQNVQR 143 (160)
T ss_dssp -HHHHHHSCHHHHHHHHHH
T ss_pred -HHHHHHHCHHHHHHHHHH
Confidence 124467777888875554
No 33
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-35 Score=261.16 Aligned_cols=116 Identities=27% Similarity=0.500 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcc-ccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLR-LNP 323 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~i-fHP 323 (497)
..+.+||++|+++|+++++.||+|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ + |||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~~HP 82 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK--PPKHT 82 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS--CCCBT
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCC--CCCCC
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999998 6 999
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCC
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKP 370 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnP 370 (497)
||+.+|+|||++|+ +.|+|++ +|.+||++||+||.+|++
T Consensus 83 nv~~~G~iCl~iL~-------~~W~P~~-~i~~vl~si~~ll~~p~~ 121 (125)
T 2fo3_A 83 HVYSNGDICLSLLG-------DDYNPSL-SISGLVLSIISMLSSAKE 121 (125)
T ss_dssp TBCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHC----
T ss_pred cCCCCCEEEchhcC-------CCCCCCC-cHHHHHHHHHHHHhCccc
Confidence 99999999999997 7999998 999999999999988875
No 34
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.2e-35 Score=291.25 Aligned_cols=148 Identities=26% Similarity=0.491 Sum_probs=130.8
Q ss_pred ChhHHHHHHHHHHHHHhc---CCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcc
Q 010916 244 PKNWAKKIQEEWKILEKN---LPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLR 320 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~---~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~i 320 (497)
+..+.+||++|+++|+++ ++.||+|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ |
T Consensus 55 s~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i 132 (253)
T 3e46_A 55 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--I 132 (253)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--C
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC--C
Confidence 467899999999999987 47899999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccccC-CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHH
Q 010916 321 LNPNLYD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFI 399 (497)
Q Consensus 321 fHPNVy~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~ 399 (497)
|||||+. +|+|||++|. +.|+|++ +|.+||++||+||.+|+| ++|.+..++. ........|++.++.
T Consensus 133 ~HPNV~~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~~ll~~pnp--~~Pln~eaa~--l~~~d~~~f~~~ar~ 200 (253)
T 3e46_A 133 WHPNISSVTGAICLDILK-------DQWAAAM-TLRTVLLSLQALLAAAEP--DDPQDAVVAN--QYKQNPEMFKQTARL 200 (253)
T ss_dssp CBTTBCTTTCBBCCGGGT-------TCCCTTC-CHHHHHHHHHHHHHSCCT--TSCSCHHHHH--HHHHCHHHHHHHHHH
T ss_pred ccCCccCCCCeeeccccc-------CCCCCCC-CHHHHHHHHHHHhcCCCC--CChhhHHHHH--HHHHCHHHHHHHHHH
Confidence 9999995 9999999997 7999998 999999999999999999 8898776432 223344567777777
Q ss_pred HHHHHH
Q 010916 400 YSLKTM 405 (497)
Q Consensus 400 ~t~ktm 405 (497)
++.+++
T Consensus 201 ~t~~yA 206 (253)
T 3e46_A 201 WAHVYA 206 (253)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766654
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=2.5e-34 Score=268.30 Aligned_cols=146 Identities=23% Similarity=0.379 Sum_probs=125.6
Q ss_pred ChhHHHHHHHHHHHHHh-c-C------CC---CeEEEe-cCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCe
Q 010916 244 PKNWAKKIQEEWKILEK-N-L------PD---TIFVRV-CEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPS 311 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k-~-~------p~---gI~V~p-~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPk 311 (497)
+..+.+||++|+++|++ . + |. ++.+.+ .++|+++|+++|.||++|||+||+|+|+|.||++||++||+
T Consensus 4 s~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~ 83 (172)
T 2y9m_A 4 ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPK 83 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred cHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCE
Confidence 35788999999999998 5 3 43 567787 88999999999999999999999999999999999999999
Q ss_pred eeeec-CCccccccc-cCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhh
Q 010916 312 VYYYS-GGLRLNPNL-YDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKM 389 (497)
Q Consensus 312 V~F~T-~~~ifHPNV-y~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~ 389 (497)
|+|.| + +||||| +.+|+|||++|+ .+.|+|++ +|.+||++||+||.+|+| ++|++..+
T Consensus 84 v~f~t~~--i~HPni~~~~G~iCl~iL~------~~~W~p~~-~i~~vL~si~~ll~~p~~--~~p~n~~a--------- 143 (172)
T 2y9m_A 84 ISFMQNN--ILHCNVKSATGEICLNILK------PEEWTPVW-DLLHCVHAVWRLLREPVC--DSPLDVDI--------- 143 (172)
T ss_dssp EEECTTS--CCCTTEETTTTEECCGGGS------TTTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSHHH---------
T ss_pred EEEeeCC--eecCCCcCCCCEEeccccC------CCCCCCcC-cHHHHHHHHHHHHhCCCC--CCccCHHH---------
Confidence 99999 8 999999 589999999997 26899998 999999999999999988 78866532
Q ss_pred hhcccHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHH
Q 010916 390 SRSYNDDAFIYSLKTMMYTLRK-PPKHFEDLVAMHFR 425 (497)
Q Consensus 390 s~~YNe~vr~~t~ktm~~~L~~-pP~~Fe~~V~~HF~ 425 (497)
..++++ .++.|++.|+.+.+
T Consensus 144 ----------------a~~~~~~d~~~f~~~~~~~~~ 164 (172)
T 2y9m_A 144 ----------------GNIIRCGDMSAYQGIVKYFLA 164 (172)
T ss_dssp ----------------HHHHTTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHhCCHHHHHHHHHHHHH
Confidence 244666 77777776665544
No 36
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=9.5e-35 Score=273.38 Aligned_cols=121 Identities=27% Similarity=0.421 Sum_probs=113.6
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCeEEE-ecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccc
Q 010916 243 PPKNWAKKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRL 321 (497)
Q Consensus 243 ~s~~a~KRL~kElk~L~k~~p~gI~V~-p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~if 321 (497)
.+..+.+||++|+++| ++|+||++. +.++|++.|+++| ||++|||+||+|+|+|.||++||++||+|+|.|+ +|
T Consensus 23 ~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~--i~ 97 (180)
T 2nvu_C 23 KASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM--VY 97 (180)
T ss_dssp SCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSC--CC
T ss_pred CccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceecc--Cc
Confidence 3567899999999999 678999998 7899999999988 9999999999999999999999999999999999 99
Q ss_pred cccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcc
Q 010916 322 NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378 (497)
Q Consensus 322 HPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~ 378 (497)
||||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+|+| ++|++.
T Consensus 98 HPNV~~~G~iCl~iL~-------~~W~p~~-~i~~vL~si~~ll~~Pn~--~~p~n~ 144 (180)
T 2nvu_C 98 HPNIDLEGNVALNILR-------EDWKPVL-TINSIIYGLQYLFLEPNP--EDPLNK 144 (180)
T ss_dssp BTTBCTTSBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSH
T ss_pred cCCCCCCCcEEccccc-------ccCCCCC-CHHHHHHHHHHHHhCCCC--CCccCH
Confidence 9999999999999998 7999998 999999999999999888 888665
No 37
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.8e-35 Score=285.59 Aligned_cols=120 Identities=31% Similarity=0.619 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCC-CcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccc
Q 010916 247 WAKKIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNL 325 (497)
Q Consensus 247 a~KRL~kElk~L~k~~p~gI~V~p~ed-nl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNV 325 (497)
+.+||++|++.|++++|+||++.+.++ +++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ ||||||
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~--i~HPNI 80 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK--VYHPNI 80 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTT--CCCSSS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCC--CccCcC
Confidence 579999999999999999999999776 56799999999999999999999999999999999999999999 999999
Q ss_pred cC-CCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcc
Q 010916 326 YD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFE 378 (497)
Q Consensus 326 y~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~ 378 (497)
+. +|+|||++|+ +.|+|++ ||.+||++||+||.+|+| ++|.+.
T Consensus 81 ~~~~G~ICL~iL~-------~~WsP~~-ti~~VL~sI~sLL~~Pnp--~~Pln~ 124 (215)
T 1tte_A 81 SSVTGAICLDILR-------NAWSPVI-TLKSALISLQALLQSPEP--NDPQDA 124 (215)
T ss_dssp CSSSSCCCSSTTT-------CCSCTTC-CHHHHHHHHHHHHTSCCC--SSCSCH
T ss_pred cCCCCEEECccCC-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCccCH
Confidence 99 9999999998 7999998 999999999999999999 777655
No 38
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=5.3e-35 Score=267.70 Aligned_cols=146 Identities=23% Similarity=0.413 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEE-ecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccc
Q 010916 247 WAKKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNL 325 (497)
Q Consensus 247 a~KRL~kElk~L~k~~p~gI~V~-p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNV 325 (497)
+.+||++|+++|++++++||.+. +.++|++.|+++|. |++|||+||+|+|+|.||++||++||+|+|.|+ +|||||
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPnv 79 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTK--IYHPNI 79 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSC--CCCTTB
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCC--CccccC
Confidence 46899999999999999999754 57889999999998 999999999999999999999999999999999 999999
Q ss_pred cCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHHHH
Q 010916 326 YDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKTM 405 (497)
Q Consensus 326 y~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~ktm 405 (497)
+.+|+|||++|+. +.|+|++ +|.+||++|++||.+|+| ++|++..+
T Consensus 80 ~~~G~iCl~iL~~------~~W~p~~-~i~~vl~~i~~ll~~p~~--~~p~n~~a------------------------- 125 (154)
T 1c4z_D 80 DEKGQVCLPVISA------ENWKPAT-KTDQVIQSLIALVNDPQP--EHPLRADL------------------------- 125 (154)
T ss_dssp CTTCBBCCTTTSS------SSCCTTC-CHHHHHHHHHHHHHSCCC--SSCSCHHH-------------------------
T ss_pred CCCCEEECCCCCC------CCCCCCC-cHHHHHHHHHHHHcCCCC--CchhhHHH-------------------------
Confidence 9999999999962 7899998 999999999999999888 77765531
Q ss_pred HHHhcCCcchHHHHHHHHHHhcHH
Q 010916 406 MYTLRKPPKHFEDLVAMHFRNHAH 429 (497)
Q Consensus 406 ~~~L~~pP~~Fe~~V~~HF~~~~~ 429 (497)
..++++.++.|++.|+.+.++.+.
T Consensus 126 a~~~~~~~~~f~~~~~~~~~~~a~ 149 (154)
T 1c4z_D 126 AEEYSKDRKKFCKNAEEFTKKYGE 149 (154)
T ss_dssp HHHHHTCSSTTHHHHHHHHTTC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcc
Confidence 234667778888877776665553
No 39
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=7.6e-35 Score=266.90 Aligned_cols=118 Identities=21% Similarity=0.459 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccccc
Q 010916 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLY 326 (497)
Q Consensus 247 a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy 326 (497)
+.+||+||++.|+++ ||.|.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||+
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPni~ 77 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK--LLHPNVD 77 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTTBC
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecC--CccCcCc
Confidence 358999999999875 78999999999999999999999999999999999999999999999999999 9999999
Q ss_pred C-CCCeeeccccCcCCCCCCCccccccchHHHHHH-HHHHHhccCCCCCCCCccc
Q 010916 327 D-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVS-IQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 327 ~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlS-IqsLL~~pnPyfNEPg~~~ 379 (497)
. +|+|||++|+ +.|+|++ +|.+||++ ||+||.+|+| ++|++..
T Consensus 78 ~~~G~iCl~il~-------~~W~p~~-~i~~vl~~ii~~Ll~~Pn~--~~P~n~~ 122 (152)
T 2onu_A 78 EASGSVCLDVIN-------QTWTPLY-SLVNVFEVFLPQLLTYPNP--SDPLNSD 122 (152)
T ss_dssp TTTCBBCHHHHH-------HHCCTTC-CHHHHHHTHHHHHHHSCCC--SSCSSHH
T ss_pred CcCCeEeccccc-------ccCCCCC-CHHHHHHHHHHHHHhCCCC--CCcccHH
Confidence 5 9999999998 6899998 99999999 6899999888 8887654
No 40
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.7e-34 Score=258.56 Aligned_cols=108 Identities=26% Similarity=0.508 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcCCCCeEEE--ecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccc--cc
Q 010916 248 AKKIQEEWKILEKNLPDTIFVR--VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRL--NP 323 (497)
Q Consensus 248 ~KRL~kElk~L~k~~p~gI~V~--p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~if--HP 323 (497)
.+||+||+++|++++|+||+|. +.++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+ +| ||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~--i~~~HP 101 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE--NIPVHP 101 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS--CCCCBT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC--CcCCCc
Confidence 4999999999999999999976 788999999999999999999999999999999999999999999999 66 99
Q ss_pred cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHH
Q 010916 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALI 365 (497)
Q Consensus 324 NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL 365 (497)
|||.+|+|||++|+ +.|+|++ +|.+||++||+||
T Consensus 102 NV~~~G~ICL~iL~-------~~WsP~~-ti~~vL~sI~slL 135 (136)
T 2a7l_A 102 HVYSNGHICLSILT-------EDWSPAL-SVQSVCLSIISML 135 (136)
T ss_dssp TBCTTCBBCCGGGT-------TTCCTTS-CHHHHHHHHHHHT
T ss_pred cCCCCCeEEchhcC-------CCCCCCC-cHHHHHHHHHHHh
Confidence 99999999999998 7999999 9999999999997
No 41
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=4.8e-34 Score=270.64 Aligned_cols=140 Identities=25% Similarity=0.406 Sum_probs=124.5
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCeEEE----ecCCCcc---eeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeee
Q 010916 242 KPPKNWAKKIQEEWKILEKNLPDTIFVR----VCEARME---LLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYY 314 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~p~gI~V~----p~ednl~---~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F 314 (497)
...+.+.+||++||++|+ +|+||++. +.++|++ .|+++|. |++|||+||+|+|+|.||++||++||+|+|
T Consensus 25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f 101 (190)
T 3o2u_A 25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC 101 (190)
T ss_dssp CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence 345678999999999998 78899998 8899999 9999997 888999999999999999999999999999
Q ss_pred ecCCccccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhccc
Q 010916 315 YSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYN 394 (497)
Q Consensus 315 ~T~~~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YN 394 (497)
.|+ +|||||+.+|+|||++|+ +.|+|++ +|.+||++|++||.+|+| ++|.+..
T Consensus 102 ~t~--i~HPnV~~~G~iCl~iL~-------~~W~p~~-~i~~vL~~i~~ll~~pn~--~~pln~~--------------- 154 (190)
T 3o2u_A 102 LKK--IFHPNIDLKGNVCLNILR-------EDWSPAL-DLQSIITGLLFLFLEPNP--NDPLNKD--------------- 154 (190)
T ss_dssp CSC--CCCTTBCTTSBBCCGGGT-------TTCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSHH---------------
T ss_pred ecC--cccCCCCCCCeEechhcc-------CCCCCCC-CHHHHHHHHHHHHhCCCC--CcchhHH---------------
Confidence 999 999999999999999998 7999998 999999999999999998 7886542
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHH
Q 010916 395 DDAFIYSLKTMMYTLRKPPKHFEDLVA 421 (497)
Q Consensus 395 e~vr~~t~ktm~~~L~~pP~~Fe~~V~ 421 (497)
+..++++.++.|++.|+
T Consensus 155 ----------aa~~~~~d~~~f~~~ar 171 (190)
T 3o2u_A 155 ----------AAKLLCEGEKEFAEAVR 171 (190)
T ss_dssp ----------HHHHHHTCHHHHHHHHH
T ss_pred ----------HHHHHHHCHHHHHHHHH
Confidence 22456777788877444
No 42
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=269.07 Aligned_cols=119 Identities=21% Similarity=0.454 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
..+.+||++|+++|++ +||.|.+. +|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +||||
T Consensus 24 ~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~--i~HPN 97 (179)
T 2z5d_A 24 SPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK--IFHPN 97 (179)
T ss_dssp CHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBTT
T ss_pred hHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC--CccCc
Confidence 3689999999999985 58888887 579999999999999999999999999999999999999999999 99999
Q ss_pred ccC-CCCeeeccccCcCCCCCCCccccccchHHHHHH-HHHHHhccCCCCCCCCccc
Q 010916 325 LYD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVS-IQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 325 Vy~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlS-IqsLL~~pnPyfNEPg~~~ 379 (497)
|+. +|+|||++|+ +.|+|++ +|.+||++ ||+||.+|+| ++|.+..
T Consensus 98 V~~~~G~ICL~iL~-------~~WsP~~-ti~~iL~s~I~~Ll~~Pn~--~~p~n~e 144 (179)
T 2z5d_A 98 IDEASGTVCLDVIN-------QTWTALY-DLTNIFESFLPQLLAYPNP--IDPLNGD 144 (179)
T ss_dssp BCTTTCBBCHHHHH-------HHCCTTC-CTTHHHHTHHHHHHHSCCC--SSCSCHH
T ss_pred CCCCCCeEeccccc-------cCCCCCC-CHHHHHHHHHHHHHhCCCC--CCccCHH
Confidence 999 9999999998 6899998 99999999 9999999998 7886653
No 43
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=5.3e-33 Score=289.24 Aligned_cols=169 Identities=21% Similarity=0.389 Sum_probs=141.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCcccccc
Q 010916 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPN 324 (497)
+.+.|||++|+++|++++|+||++.|.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +||||
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 79 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR--IYHPN 79 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSC--CCCTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecc--ccccc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChhhhhhhhcccHHHHHHHHHH
Q 010916 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPEGEKMSRSYNDDAFIYSLKT 404 (497)
Q Consensus 325 Vy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s~~YNe~vr~~t~kt 404 (497)
|+.+|+|||++|. +.|+|++ +|.+||++|++||.+|+| ++|.+..++. .... +...+...+|.
T Consensus 80 v~~~G~iCl~il~-------~~W~p~~-~i~~vL~~i~~ll~~pnp--~~p~n~~aa~--~~~~-----d~~~y~~~~~~ 142 (399)
T 4ddg_A 80 INSNGSISLDILR-------SQWSPAL-TISKVLLSICSLLCDPNP--DDPLVPEIAR--IYKT-----DREKYNRIARE 142 (399)
T ss_dssp BCTTCBBCCGGGT-------TSCCTTC-CHHHHHHHHHHHHHSCCT--TSCSSHHHHH--HHHH-----CHHHHHHHHHH
T ss_pred cCCCCeEeCcccc-------cCCCccc-cHHHHHHHHHHHHcCCCC--CchhhHHHHH--HHHH-----CHHHHHHHHHH
Confidence 9999999999997 7999998 999999999999999999 8887765321 1122 33344444444
Q ss_pred HHHHhcCCcchHHHHHHHHHHhcHHHHH
Q 010916 405 MMYTLRKPPKHFEDLVAMHFRNHAHDIL 432 (497)
Q Consensus 405 m~~~L~~pP~~Fe~~V~~HF~~~~~~Il 432 (497)
++..+...+..+.+.|.+.-+.-..+|.
T Consensus 143 ~~~~~a~~~v~~De~i~~q~~~I~~e~~ 170 (399)
T 4ddg_A 143 WTQKYAMGGSAYDEAIMAQQDRIQQEIA 170 (399)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhHHHHHHHHHHHhhhc
Confidence 4455566677787777775555445443
No 44
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.9e-33 Score=260.51 Aligned_cols=128 Identities=17% Similarity=0.279 Sum_probs=115.2
Q ss_pred CChhHHHHHHHHHHHHHhcCCCC-eEEEe-cCCC--cceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCC
Q 010916 243 PPKNWAKKIQEEWKILEKNLPDT-IFVRV-CEAR--MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGG 318 (497)
Q Consensus 243 ~s~~a~KRL~kElk~L~k~~p~g-I~V~p-~edn--l~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~ 318 (497)
....+.+||+||+++|++++++| +.+.+ .++| ++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 22 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~- 100 (160)
T 2a4d_A 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK- 100 (160)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC-
T ss_pred eechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC-
Confidence 34678999999999999999998 67776 5555 8999999999999999999999999999999999999999999
Q ss_pred cccccccc-CCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHh-ccCCCCCCCCcccC
Q 010916 319 LRLNPNLY-DCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALIL-NAKPFFNEPGFEKS 380 (497)
Q Consensus 319 ~ifHPNVy-~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~-~pnPyfNEPg~~~~ 380 (497)
+|||||+ .+|+|||++|+.| +.|+|++ +|.+||++||+||. .||+ ++|.+..+
T Consensus 101 -i~HPNV~~~~G~ICl~iL~~~-----~~WsP~~-ti~~vL~sI~~ll~~~pn~--~~P~n~ea 155 (160)
T 2a4d_A 101 -INMNGVNSSNGVVDPRAISVL-----AKWQNSY-SIKVVLQELRRLMMSKENM--KLPQPPEG 155 (160)
T ss_dssp -CCCTTBCTTTCBBCGGGSHHH-----HTCCTTC-CHHHHHHHHHHHHTSTTTT--TCCCCCTT
T ss_pred -ceeCCEECCCCEEehhhcCCc-----cCCCccC-cHHHHHHHHHHHHccCCCC--CCCCChhh
Confidence 9999999 6999999999855 5899998 99999999999995 4666 88877653
No 45
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=262.41 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=124.3
Q ss_pred cccCCCCCceecccccCCCCCChhHHHHHHHHHHHHHhcCCCC-eEEEe-cCCC--cceeEEEEEcCCCCCCCCcEEEEE
Q 010916 223 TVDDFSDHHYNRMGFLGEEKPPKNWAKKIQEEWKILEKNLPDT-IFVRV-CEAR--MELLRAVMIGPSGTPYHDGLFVFD 298 (497)
Q Consensus 223 ~v~~~sdHhy~~~~~~~~~~~s~~a~KRL~kElk~L~k~~p~g-I~V~p-~edn--l~~W~~vI~GP~gTPYeGG~F~fd 298 (497)
.+...++||+..............+.+||++|+++|++++++| +.+.+ .+++ ++.|+++|.||++|||+||+|+|+
T Consensus 12 ~~s~~~~~~~~~p~~~~~~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~ 91 (170)
T 2hlw_A 12 SQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91 (170)
T ss_dssp CSCSSSCSSCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEE
T ss_pred cccccccccccCCccccCCcccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEE
Confidence 3445677777654332211223557899999999999999999 56776 5554 899999999999999999999999
Q ss_pred EEcCCCCCCCCCeeeeecCCcccccccc-CCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhc-cCCCCCCCC
Q 010916 299 CIFPPSYPNEPPSVYYYSGGLRLNPNLY-DCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILN-AKPFFNEPG 376 (497)
Q Consensus 299 I~FP~dYP~~PPkV~F~T~~~ifHPNVy-~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~-pnPyfNEPg 376 (497)
|.||++||++||+|+|.|+ +|||||+ .+|+|||++|+.| +.|+|++ +|.+||++||+||.+ ||+ ++|.
T Consensus 92 i~fp~~YP~~PP~v~F~T~--i~HPNV~~~~G~ICl~iL~~~-----~~WsP~~-ti~~vL~sI~~ll~~~pn~--~~P~ 161 (170)
T 2hlw_A 92 IECGPKYPEAPPFVRFVTK--INMNGVNSSNGVVDPRAISVL-----AKWQNSY-SIKVVLQELRRLMMSKENM--KLPQ 161 (170)
T ss_dssp EECCSSCTTSCCEEEECBC--CCCSSBCSSSCBBCTTTCHHH-----HTCCSSC-CHHHHHHHHHHHHHSTTTS--SSCC
T ss_pred EECCCCCCCCCCeeEEecc--cccCCEeCCCCEEEhhhcCCC-----CCCCccC-cHHHHHHHHHHHHccCCCC--CCCC
Confidence 9999999999999999999 9999999 6999999999755 5899998 999999999999975 676 8887
Q ss_pred cccC
Q 010916 377 FEKS 380 (497)
Q Consensus 377 ~~~~ 380 (497)
+..+
T Consensus 162 n~ea 165 (170)
T 2hlw_A 162 PPEG 165 (170)
T ss_dssp CSSC
T ss_pred Cccc
Confidence 7653
No 46
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=3.5e-33 Score=257.47 Aligned_cols=126 Identities=17% Similarity=0.353 Sum_probs=115.3
Q ss_pred CCChhHHHHHHHHHHHHHhc-CCCCeEEEecC-C--CcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecC
Q 010916 242 KPPKNWAKKIQEEWKILEKN-LPDTIFVRVCE-A--RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSG 317 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~-~p~gI~V~p~e-d--nl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~ 317 (497)
.....+.+||++|+++|+++ ++.||++.+.. + |++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence 55677889999999999998 78899999843 3 59999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCe---eeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccC
Q 010916 318 GLRLNPNLYDCGKV---CLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKS 380 (497)
Q Consensus 318 ~~ifHPNVy~~GkV---CLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~ 380 (497)
+|||||+.+|+| ||++|+ .|+|++ +|.+||++||+||.+|+| ++|.+..+
T Consensus 97 --i~HPNV~~~G~icisCL~iL~--------~WsP~~-ti~~vL~sI~~ll~~Pn~--~~p~n~~a 149 (156)
T 2q0v_A 97 --IEMSCVDNCGRVIKNNLHILK--------NWNRNY-TIETILISLRQEMLSSAN--KRLPQPNE 149 (156)
T ss_dssp --CCCTTBCTTSBBCGGGSHHHH--------TCCTTC-CHHHHHHHHHHHTTSTTT--TTCCCCCT
T ss_pred --cccCCCccCCeEehhhccccc--------CCCCcC-cHHHHHHHHHHHHhCCCC--CCcCChHH
Confidence 999999999999 899996 599998 999999999999999888 77776643
No 47
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-33 Score=264.16 Aligned_cols=118 Identities=21% Similarity=0.471 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccc
Q 010916 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNL 325 (497)
Q Consensus 246 ~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNV 325 (497)
.+.+||++|++.|++++. +| +.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+ +|||||
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~--i~HPNi 85 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR--ILHPNV 85 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBTTB
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecC--cccccC
Confidence 567999999999999874 44 357899999999999999999999999999999999999999999999 999999
Q ss_pred cC-CCCeeeccccCcCCCCCCCccccccchHHHHHHH-HHHHhccCCCCCCCCccc
Q 010916 326 YD-CGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSI-QALILNAKPFFNEPGFEK 379 (497)
Q Consensus 326 y~-~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSI-qsLL~~pnPyfNEPg~~~ 379 (497)
+. +|+|||++|+ +.|+|++ +|.+||++| |+||.+|+| ++|++..
T Consensus 86 ~~~~G~iCl~iL~-------~~W~p~~-~i~~vL~sil~~ll~~Pn~--~~p~n~~ 131 (171)
T 1yf9_A 86 DERSGSVCLDVIN-------QTWTPMY-QLENIFDVFLPQLLRYPNP--SDPLNVQ 131 (171)
T ss_dssp CTTTCBBCHHHHH-------HHCCTTC-CTHHHHHTHHHHHHHSCCS--SCCSCHH
T ss_pred cccCCeEeccccc-------cCCCCCC-cHHHHHHHHHHHHHhCCCC--CCcccHH
Confidence 95 9999999998 7899998 999999998 799998888 8887764
No 48
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=5.7e-33 Score=250.45 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=109.9
Q ss_pred ChhHHHHHHHHHHHHHhc-CCCCeEEEecC-C--CcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCc
Q 010916 244 PKNWAKKIQEEWKILEKN-LPDTIFVRVCE-A--RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGL 319 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~-~p~gI~V~p~e-d--nl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ 319 (497)
...+.+||+||+++|+++ ++.||++.+.. + |++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~-- 81 (138)
T 1jat_B 4 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK-- 81 (138)
T ss_dssp CCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC--
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc--
Confidence 346779999999999998 78899999843 3 49999999999999999999999999999999999999999999
Q ss_pred cccccccCC-CCe--eeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCccc
Q 010916 320 RLNPNLYDC-GKV--CLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEK 379 (497)
Q Consensus 320 ifHPNVy~~-GkV--CLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~ 379 (497)
+|||||+.+ |+| ||++|. .|+|++ +|.+||++||+||.+|+| ++|.+..
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~--------~W~p~~-~i~~vl~~i~~ll~~pn~--~~p~~~~ 133 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR--------DWKRAY-TMETLLLDLRKEMATPAN--KKLRQPK 133 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH--------TCCTTC-CHHHHHHHHHHHHTSHHH--HTSCCCC
T ss_pred cccCCEeCCCCEEeeecccCC--------CCCCcC-cHHHHHHHHHHHHcCCCC--CCCCCcc
Confidence 999999985 999 999986 799998 999999999999999988 7776654
No 49
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=99.98 E-value=8.3e-33 Score=256.61 Aligned_cols=141 Identities=18% Similarity=0.326 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHhcC------------CCCeEEEecCCCcceeEEEEEcCCCCCCC--CcEEEEEEEcCCCCCCCCCe
Q 010916 246 NWAKKIQEEWKILEKNL------------PDTIFVRVCEARMELLRAVMIGPSGTPYH--DGLFVFDCIFPPSYPNEPPS 311 (497)
Q Consensus 246 ~a~KRL~kElk~L~k~~------------p~gI~V~p~ednl~~W~~vI~GP~gTPYe--GG~F~fdI~FP~dYP~~PPk 311 (497)
.+.|||++|+++|++++ +.||.+.+.++|+++|+++|.||++|||+ ||+|+|+|.||++||++||+
T Consensus 8 ~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~ 87 (167)
T 4ds2_A 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPT 87 (167)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred HHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCE
Confidence 45799999999999987 78999999999999999999999999999 99999999999999999999
Q ss_pred eeeecCCccccccccCCCCeeeccccCcCCCCCCCccccccchHHHHH-HHHHHHhccCCCCCCCCcccCCCChhhhhhh
Q 010916 312 VYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLV-SIQALILNAKPFFNEPGFEKSYVGPEGEKMS 390 (497)
Q Consensus 312 V~F~T~~~ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLl-SIqsLL~~pnPyfNEPg~~~~~~~~~~e~~s 390 (497)
|+|.|+ +|||||+.+|+|||++|. +.|+|++ +|.+||+ .|++|+...+|..++|.+..
T Consensus 88 v~f~t~--i~HPnv~~~G~iCl~il~-------~~W~p~~-~i~~vll~~l~~l~~~~~pn~~~p~n~e----------- 146 (167)
T 4ds2_A 88 VRFVTP--VYSPLVTGEGGICDRMVN-------DFWTPDQ-HASDVIKLVLDRVFSQYKSRRDDDVNPE----------- 146 (167)
T ss_dssp EEESSC--CCCSSCCTTSCCCTHHHH-------TTCCTTS-CHHHHHHHHHHHHHTSTTSCCSCCCCHH-----------
T ss_pred EEEeCC--cccccCCCCCEEEcccCc-------CCCCCCC-ChHHHHHHHHHHHHhcCCCCCcchHhHH-----------
Confidence 999999 999999999999999998 7999998 9999765 57788776444347775542
Q ss_pred hcccHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 010916 391 RSYNDDAFIYSLKTMMYTLRKPPKHFEDLVA 421 (497)
Q Consensus 391 ~~YNe~vr~~t~ktm~~~L~~pP~~Fe~~V~ 421 (497)
+..++++.++.|++.|+
T Consensus 147 --------------aa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 147 --------------ARHYLEKFPQDFAARVR 163 (167)
T ss_dssp --------------HHHHHHHCHHHHHHHHT
T ss_pred --------------HHHHHHHCHHHHHHHHh
Confidence 22446667777877665
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.98 E-value=5.4e-32 Score=256.03 Aligned_cols=120 Identities=21% Similarity=0.462 Sum_probs=103.1
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccc
Q 010916 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRL 321 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~if 321 (497)
..+..+.+||++|+++|++++++||.+.+.++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus 10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~---- 85 (187)
T 2f4w_A 10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP---- 85 (187)
T ss_dssp ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC----
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC----
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCC
Q 010916 322 NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKP 370 (497)
Q Consensus 322 HPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnP 370 (497)
|||++.+|+|||++|++| .+.|+|++ +|.+||++|++||.+|+|
T Consensus 86 ~~~~~~~G~ICL~iL~~~----~~~W~P~~-ti~~vL~si~sll~~p~p 129 (187)
T 2f4w_A 86 NGRFKCNTRLCLSITDFH----PDTWNPAW-SVSTILTGLLSFMVEKGP 129 (187)
T ss_dssp CSSBCTTSCBC--------------CCTTC-CHHHHHHHHHHHHHSCCC
T ss_pred CceeccCCeEeeeccccC----ccCCCCcC-cHHHHHHHHHHHhcCCCC
Confidence 888888999999999754 37999998 999999999999999987
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=2e-32 Score=258.86 Aligned_cols=144 Identities=15% Similarity=0.254 Sum_probs=125.6
Q ss_pred CCChhHHHHHHHHHHHHHhcC---CCCeEEEecCCCcceeEEEEEcC-CCCCCCC-----------cEEEEEEEcCCCCC
Q 010916 242 KPPKNWAKKIQEEWKILEKNL---PDTIFVRVCEARMELLRAVMIGP-SGTPYHD-----------GLFVFDCIFPPSYP 306 (497)
Q Consensus 242 ~~s~~a~KRL~kElk~L~k~~---p~gI~V~p~ednl~~W~~vI~GP-~gTPYeG-----------G~F~fdI~FP~dYP 306 (497)
..+..+.+||++||++|++++ +.+|.+.+.++|++.|+++|.|| ++|||+| |.|+|+|.||++||
T Consensus 23 ~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP 102 (186)
T 1zuo_A 23 SGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP 102 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTT
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCC
Confidence 557788999999999999998 68899999999999999999998 9999998 89999999999999
Q ss_pred CCCCeeeeecCCccccc-cccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCCCCCCCcccCCCChh
Q 010916 307 NEPPSVYYYSGGLRLNP-NLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPFFNEPGFEKSYVGPE 385 (497)
Q Consensus 307 ~~PPkV~F~T~~~ifHP-NVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPyfNEPg~~~~~~~~~ 385 (497)
++||+|+|.|+ +||| ||+.+|+|||++|.. +.|+|++ +|.+||++||+||.+|++..+
T Consensus 103 ~~PP~V~f~tp--i~hPnnV~~~G~ICL~iL~~------~~WsP~~-ti~~VL~sI~slL~~p~a~~~------------ 161 (186)
T 1zuo_A 103 FDPPFVRVVLP--VLSGGYVLGGGALCMELLTK------QGWSSAY-SIESVIMQINATLVKGKARVQ------------ 161 (186)
T ss_dssp SSCCEEEEEES--CEESTTBCGGGBBCCGGGST------TTCCTTS-CHHHHHHHHHHHHHHTTCEEC------------
T ss_pred CCCCeEEEeCC--ccCCCccCCCCcEEeccCCC------CCCCCcC-cHHHHHHHHHHHHcCCChhHh------------
Confidence 99999999999 9999 699999999999972 6899998 999999999999999866211
Q ss_pred hhhhhhcccHHHHHHHHHHHH
Q 010916 386 GEKMSRSYNDDAFIYSLKTMM 406 (497)
Q Consensus 386 ~e~~s~~YNe~vr~~t~ktm~ 406 (497)
.......|++.++..+.+.++
T Consensus 162 ~~~~~~~Y~~~~~~~~~~~~~ 182 (186)
T 1zuo_A 162 FGANKNQYNLARAQQSYNSIV 182 (186)
T ss_dssp TTCCTTCCCHHHHHHHHHHHH
T ss_pred hccCHHHHhHHHHHHHHHHHH
Confidence 111245799888877766553
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.86 E-value=7.2e-23 Score=190.35 Aligned_cols=102 Identities=18% Similarity=0.309 Sum_probs=91.7
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCc----------EEEEEEEcCCCCCCCCCeee
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDG----------LFVFDCIFPPSYPNEPPSVY 313 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG----------~F~fdI~FP~dYP~~PPkV~ 313 (497)
...|.+||++|++.|.+ ++.+..+++..|.++|.||+||||+|| .|.+.|.||.+||++||+|+
T Consensus 30 ~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 30 RELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred cHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence 57899999999999998 366778899999999999999999999 99999999999999999999
Q ss_pred eecCCccccccccCCCCeeeccccC--cCCCCCCCccccccchHHHH
Q 010916 314 YYSGGLRLNPNLYDCGKVCLSLLGT--WTGKSTEMWDKNKSTMLQVL 358 (497)
Q Consensus 314 F~T~~~ifHPNVy~~GkVCLslL~T--w~G~~~E~WsP~~STI~qVL 358 (497)
|.+. .+||||||.+|+|||++|.. | ..|+|.+ +|.+||
T Consensus 104 F~~~-~~~hpnmY~~G~ICLdIL~kp~W-----s~~~P~~-~IahiL 143 (172)
T 2z6o_A 104 VPEL-DGKTAKMYRGGKICLTDHFKPLW-----ARNVPKF-GLAHLM 143 (172)
T ss_dssp CGGG-TTTCSSBCTTSBBCCCTTHHHHH-----HHHTTSC-CHHHHH
T ss_pred eCCC-CCCCCCCCCCCcEechhhccccc-----cccCCcc-CHHHHH
Confidence 9984 38999999999999999942 3 2566998 999887
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.62 E-value=7.6e-16 Score=143.03 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcCC---CCeEEEecCCCcceeEEEEEcCCCCCCCCcE---EEEEEEcCCCCCCCCCeeeeecC--C-
Q 010916 248 AKKIQEEWKILEKNLP---DTIFVRVCEARMELLRAVMIGPSGTPYHDGL---FVFDCIFPPSYPNEPPSVYYYSG--G- 318 (497)
Q Consensus 248 ~KRL~kElk~L~k~~p---~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~---F~fdI~FP~dYP~~PPkV~F~T~--~- 318 (497)
.+|..+|+..+.+.-| +...+...++....+-..+.|+-.++|+||. |.+.|.||.+||++||.|.|.+. .
T Consensus 30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m 109 (162)
T 3r3q_A 30 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM 109 (162)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCT
T ss_pred hhHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccc
Confidence 3677788888766544 2334445667777777888888889999999 88999999999999999988651 1
Q ss_pred -----ccc-cccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCC
Q 010916 319 -----LRL-NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKP 370 (497)
Q Consensus 319 -----~if-HPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnP 370 (497)
.++ ||||+.+|+|||++|. .|+|..++|.+||.+|++||.+|+|
T Consensus 110 ~~~~~~I~~hpnVD~~G~I~lpyL~--------~W~p~~s~L~~ll~~l~~lf~ep~~ 159 (162)
T 3r3q_A 110 NTISSSLPIQEYIDSNGWIALPILH--------AWDPAAMNLIMVVQELMSLLHEPPQ 159 (162)
T ss_dssp TTSCTTSTHHHHBCTTSBBCCGGGG--------SCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred cccccccCCCCCCCCCCcEeCcccc--------cCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 166 9999999999999996 6999656999999999999998887
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.50 E-value=4.7e-15 Score=135.75 Aligned_cols=86 Identities=22% Similarity=0.396 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCc----------EEEEEEEcCCCCCCCCCeee
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDG----------LFVFDCIFPPSYPNEPPSVY 313 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG----------~F~fdI~FP~dYP~~PPkV~ 313 (497)
...|..||..|+..|-+- |.....+-..|..++.||.||+|.|+ .|.+.|.||.+||..||+|+
T Consensus 32 ~~~w~~RlkeEy~alI~y------v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~ 105 (168)
T 3kpa_A 32 GDKWTARLKEEYASLITY------VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIA 105 (168)
T ss_dssp THHHHHHHHHHHHHHHHH------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred HHHHHHHHHHHHHHHHHH------HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEee
Confidence 456999999999998532 33444556789999999999999999 89999999999999999999
Q ss_pred eecCCccccccccCCCCeeeccc
Q 010916 314 YYSGGLRLNPNLYDCGKVCLSLL 336 (497)
Q Consensus 314 F~T~~~ifHPNVy~~GkVCLslL 336 (497)
|.+. ..+|||+|.+|+|||+++
T Consensus 106 Fp~l-dgkt~kmYr~GkICLdIh 127 (168)
T 3kpa_A 106 LPEL-EGKTVKMYRGGKICMTTH 127 (168)
T ss_dssp CGGG-TTTCSSEETTTEECCCTT
T ss_pred cccc-cCcCccccCCCcEEeccc
Confidence 9984 269999999999999985
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.24 E-value=2.4e-11 Score=111.18 Aligned_cols=109 Identities=16% Similarity=0.267 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCC-CeEEEe---cCCCcceeEEEEEcCCCCCCCCcEEEE--EEEcCCCCCCCCCeeeeecC----Cc
Q 010916 250 KIQEEWKILEKNLPD-TIFVRV---CEARMELLRAVMIGPSGTPYHDGLFVF--DCIFPPSYPNEPPSVYYYSG----GL 319 (497)
Q Consensus 250 RL~kElk~L~k~~p~-gI~V~p---~ednl~~W~~vI~GP~gTPYeGG~F~f--dI~FP~dYP~~PPkV~F~T~----~~ 319 (497)
+..+|+..+.+.-|. ...... ...++..|.++|. .+|+|+.|.+ .|.||.+||+.||.| |.++ .+
T Consensus 24 ~t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I 98 (146)
T 3obq_A 24 LTVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTI 98 (146)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEE
T ss_pred hhHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEE
Confidence 345677777665542 112222 2357889999998 7899999985 999999999999999 6654 13
Q ss_pred cccccccCCCCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCCC
Q 010916 320 RLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKPF 371 (497)
Q Consensus 320 ifHPNVy~~GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnPy 371 (497)
+.||||+.+|+||+..|. .|++..++|..+|.+++.+|...-|.
T Consensus 99 ~~~~~Vd~~G~i~lpyL~--------~W~~~~snL~~ll~~l~~~F~~epPv 142 (146)
T 3obq_A 99 KTGKHVDANGKIYLPYLH--------EWKHPQSDLLGLIQVMIVVFGDEPPV 142 (146)
T ss_dssp CCBTTBCTTCBBCCHHHH--------TCCTTTCCHHHHHHHHHHHHHHSCSE
T ss_pred CCCCCCCCCCCEeccccc--------ccCCCCCCHHHHHHHHHHHHhhCCCC
Confidence 589999999999999997 58885679999999999999876553
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.75 E-value=0.27 Score=42.36 Aligned_cols=70 Identities=17% Similarity=0.297 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecC
Q 010916 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSG 317 (497)
Q Consensus 246 ~a~KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~ 317 (497)
....+...|+..|+.--+..+.+ .......+++.|..-.+..-+.-.+.+.|.||++||..||.+.+.++
T Consensus 10 ~~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~ 79 (128)
T 2ebm_A 10 DYGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQ 79 (128)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEcC
Confidence 34577789999998877655543 22223455555542222222334788999999999999999987653
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.54 E-value=0.61 Score=40.12 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEecCC--CcceeEEEEEcCCCCCCC--CcEEEEEEEcCCCCCCCCCeeeeecC
Q 010916 249 KKIQEEWKILEKNLPDTIFVRVCEA--RMELLRAVMIGPSGTPYH--DGLFVFDCIFPPSYPNEPPSVYYYSG 317 (497)
Q Consensus 249 KRL~kElk~L~k~~p~gI~V~p~ed--nl~~W~~vI~GP~gTPYe--GG~F~fdI~FP~dYP~~PPkV~F~T~ 317 (497)
.+...|+..|+.--+..+.+.-... ....+.+.|..+.+..-+ .-.+.+.|.||++||..||.|...+.
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 4678999999887766664432221 233444555432221111 24788999999999999999987764
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=91.10 E-value=2.6 Score=36.62 Aligned_cols=70 Identities=9% Similarity=0.152 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEEEecC-------CCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecC
Q 010916 246 NWAKKIQEEWKILEKNLPDTIFVRVCE-------ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSG 317 (497)
Q Consensus 246 ~a~KRL~kElk~L~k~~p~gI~V~p~e-------dnl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~ 317 (497)
....+-..|+..|+.--+..+. .... .....+++.|....+ +-..-.+.+.|.||++||..||.|.+.+.
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~-~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 10 QYYEIQCNELEAIRSIYMDDFT-DLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHHHHHTTSSSSEE-CCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred chHHHHHHHHHHHHHHChhhhe-ecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 3455677888888776554432 2222 124556677764332 11234788999999999999999988765
No 59
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=88.95 E-value=4 Score=35.23 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEecCC------CcceeEEEEEcCCC-C-CCCCcEEEEEEEcCCCCCCCCCeeeee
Q 010916 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEA------RMELLRAVMIGPSG-T-PYHDGLFVFDCIFPPSYPNEPPSVYYY 315 (497)
Q Consensus 244 s~~a~KRL~kElk~L~k~~p~gI~V~p~ed------nl~~W~~vI~GP~g-T-PYeGG~F~fdI~FP~dYP~~PPkV~F~ 315 (497)
......+...|+..|+.--+..+.+ .... .....++.|. |.+ . .-..-.+.+.|.||++||..||.|.+.
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~-~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 8 MESYSQRQDHELQALEAIYGSDFQD-LRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSSEEE-CCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred CcchHHHHHHHHHHHHHHCccccee-ccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 3455677889999998876655433 2221 1334455554 222 1 001246889999999999999999875
Q ss_pred c
Q 010916 316 S 316 (497)
Q Consensus 316 T 316 (497)
+
T Consensus 86 ~ 86 (137)
T 1ukx_A 86 N 86 (137)
T ss_dssp E
T ss_pred c
Confidence 4
No 60
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=84.11 E-value=5.9 Score=37.38 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeecCCccccccccCC
Q 010916 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC 328 (497)
Q Consensus 249 KRL~kElk~L~k~~p~gI~V~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T~~~ifHPNVy~~ 328 (497)
.+|.+|+..|-=+.. +.. ...+...+..+.... |-...+.|.++.+||..||.+...-|. .++
T Consensus 4 ~~li~Ei~~iGW~~l----~~i-d~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~-~~~------ 66 (186)
T 3zqs_A 4 SSLIEEIGTLGWDKL----VYA-DTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV-PFC------ 66 (186)
T ss_dssp CSHHHHHHHHCGGGE----EEE-CTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS-CCC------
T ss_pred HHHHHHHHHhCCcee----eee-cCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC-Ccc------
Confidence 468889888832221 222 456888888888544 567889999999999999988776661 111
Q ss_pred CCeeeccccCcCCCCCCCccccccchHHHHHHHHHHHhccCC
Q 010916 329 GKVCLSLLGTWTGKSTEMWDKNKSTMLQVLVSIQALILNAKP 370 (497)
Q Consensus 329 GkVCLslL~Tw~G~~~E~WsP~~STI~qVLlSIqsLL~~pnP 370 (497)
-.|+|.. ++..|+..++..|..-.+
T Consensus 67 ----------------~~w~~~s-sL~~v~~qF~~~Le~lq~ 91 (186)
T 3zqs_A 67 ----------------ASWTPQS-SLISIYSQFLAAIESLKA 91 (186)
T ss_dssp ----------------CCCCTTC-CHHHHHHHHHHHHHHTHH
T ss_pred ----------------cccCCCc-cHHHHHHHHHHHHHHHHH
Confidence 3688874 899998888887755333
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.82 E-value=3.4 Score=35.50 Aligned_cols=67 Identities=19% Similarity=0.143 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCC--CeEE-EecCCCcceeEEEEEcCCCCCCCCcEEEEEEEcCCCCCCCCCeeeeec
Q 010916 249 KKIQEEWKILEKNLPD--TIFV-RVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYS 316 (497)
Q Consensus 249 KRL~kElk~L~k~~p~--gI~V-~p~ednl~~W~~vI~GP~gTPYeGG~F~fdI~FP~dYP~~PPkV~F~T 316 (497)
.+...|+..|+.--+. .+.+ .....+...+++.|...... =..-.+.+.|.||.+||..||.+...+
T Consensus 10 e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 10 EPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 3467788888765443 3322 11112234666666532211 012378999999999999999987654
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=78.85 E-value=6.7 Score=35.16 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHhcCC--CCeEEEecC--------------CC-c--ceeEEEEEcCCCCCCCCcEEEEEEEcCCCC
Q 010916 245 KNWAKKIQEEWKILEKNLP--DTIFVRVCE--------------AR-M--ELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305 (497)
Q Consensus 245 ~~a~KRL~kElk~L~k~~p--~gI~V~p~e--------------dn-l--~~W~~vI~GP~gTPYeGG~F~fdI~FP~dY 305 (497)
.....+-..|+..|..--| .-+.+. ++ .+ . ..+++.|.-.. + ...+.+.|.||.+|
T Consensus 13 ~~~~e~Q~eElEaL~SIY~~~de~~v~-d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~--~--~~~i~L~v~lP~~Y 87 (154)
T 2daw_A 13 KESLQLQLLEMEMLFSMFPNQGEVKLE-DVNALTNIKRYLEGTREALPPKIEFVITLQIEE--P--KVKIDLQVTMPHSY 87 (154)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSEEES-CGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETT--T--TEEEEEEEEECSST
T ss_pred hhhHHHHHHHHHHHHHhCCCCCeEEEe-ccchHHHHHHhhcccccCCCCceEEEEEEecCC--C--CceEEEEEEcCCCC
Confidence 4455667778888887666 444432 10 01 1 23443333211 1 23799999999999
Q ss_pred CCCCCeeeeecC
Q 010916 306 PNEPPSVYYYSG 317 (497)
Q Consensus 306 P~~PPkV~F~T~ 317 (497)
|..||.|...+.
T Consensus 88 P~~~P~i~l~~~ 99 (154)
T 2daw_A 88 PYLALQLFGRSS 99 (154)
T ss_dssp TSSCCEEEEECS
T ss_pred CCCCCcEEEEeC
Confidence 999999987664
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=70.17 E-value=2.7 Score=37.38 Aligned_cols=24 Identities=33% Similarity=0.664 Sum_probs=21.4
Q ss_pred EEEEEEEcCCCCCCCCCeeeeecC
Q 010916 294 LFVFDCIFPPSYPNEPPSVYYYSG 317 (497)
Q Consensus 294 ~F~fdI~FP~dYP~~PPkV~F~T~ 317 (497)
.+.+.|.+|.+||..||.+...+.
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999987765
Done!