BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010917
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 164/343 (47%), Gaps = 27/343 (7%)
Query: 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 121
+ V++ G AG+ + GR+ +++ E + PY+RP L+K YL
Sbjct: 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYL----------- 50
Query: 122 GFHTCVGSGGERQT----PE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 176
SGG+ + PE +++++ IE+I D + SID E + L+ SG ++YG L+
Sbjct: 51 ------KSGGDPNSLMFRPEKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLV 103
Query: 177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV 236
+ATG +R + LP V Y+R + +++ L + K +IG+E AA A
Sbjct: 104 LATGAR-NRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATAR 162
Query: 237 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 296
L+ ++ ++ R+ TP ++ + + G++ G + A D RV V
Sbjct: 163 AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVV 221
Query: 297 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
L DG+T+ D +V+G+G P V + GI VD Q T P I AIGD A F
Sbjct: 222 LSDGNTLPCDLVVVGVGVIPNVE-IAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFE 280
Query: 357 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 399
+ T RVE V +A A+ C+ A L+ YD P+F+S
Sbjct: 281 SVRFGETMRVESVQNATDQAR-CVAARLTGDAKPYDGYPWFWS 322
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 27/356 (7%)
Query: 86 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTPEWYKEKGI 144
+GR+ ++ +E PYERP L+K YL AR F C+ + +++++K +
Sbjct: 34 EGRVLVIGREPEIPYERPPLSKEYL-------AREKTFERICI------RPAQFWEDKAV 80
Query: 145 EMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 204
EM V S+D T+ G ++YG LI ATG R +G L GVH +R
Sbjct: 81 EMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRL-SCVGADLAGVHAVRTKE 139
Query: 205 DADALISSLEK-AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 263
DAD L++ L+ AK YIG+E AA + ++ T++ +L R+ +L++
Sbjct: 140 DADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199
Query: 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 323
Y+ ++ +GV GA++ +E G +V V+++DGS I AD +++GIG P V
Sbjct: 200 YQAEHRAHGVDLRTGAAMDCIE-GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 324 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA-RVEHVDHARQSAQHCIKA 382
G + G+ VD RT + ++AIGD AA D R+E V +A A K
Sbjct: 259 AGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKD 317
Query: 383 LLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWI 438
+ A Y P+F+S ++ + Q G + G + DP +F +
Sbjct: 318 ICGAPV-PYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSV 365
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 164/349 (46%), Gaps = 18/349 (5%)
Query: 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 117
N N VIVG G A A G +G + +V P+ P L+K YL
Sbjct: 1 NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 55
Query: 118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 177
A + +TP+ Y + I+++ VT+I+ ++Q +I + G+ L Y L++
Sbjct: 56 ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 107
Query: 178 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 235
ATG P G G Y+R + DA+ + L + YIG+EVAA A
Sbjct: 108 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 167
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 294
+ + T++ +L+R+ P ++ YE L+++ GV G + E +D +V A
Sbjct: 168 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 227
Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
V EDG+ + AD ++ GIG P GL GI ++ +T P I A+GD A
Sbjct: 228 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 286
Query: 355 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 403
F ++YDR R+E V +A + A+ I A+L + + P+F+S +E
Sbjct: 287 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 334
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 164/349 (46%), Gaps = 18/349 (5%)
Query: 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 117
N N VIVG G A A G +G + +V P+ P L+K YL
Sbjct: 2 NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYL----AGK 56
Query: 118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 177
A + +TP+ Y + I+++ VT+I+ ++Q +I + G+ L Y L++
Sbjct: 57 ATAESLYL--------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108
Query: 178 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAA 235
ATG P G G Y+R + DA+ + L + YIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD-GRVAA 294
+ + T++ +L+R+ P ++ YE L+++ GV G + E +D +V A
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228
Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
V EDG+ + AD ++ GIG P GL GI ++ +T P I A+GD A
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCAR 287
Query: 355 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 403
F ++YDR R+E V +A + A+ I A+L + + P+F+S +E
Sbjct: 288 FHSQLYDRWVRIESVPNALEQARK-IAAILCGKVPRDEAAPWFWSDQYE 335
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 135/298 (45%), Gaps = 18/298 (6%)
Query: 65 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFH 124
I+G G A+ G +GR+ ++ E + PY+RP+L+K L ++P L
Sbjct: 7 IIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL---- 61
Query: 125 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 184
+WY E I+M+ VT++D++ +T+ + G L ++++ATG A
Sbjct: 62 ---------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA- 111
Query: 185 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 244
R G LPGV +R D L S A + IG EVA A L TI
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI 171
Query: 245 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 304
+ + LL R+ + L + GV+ G + +G++ V DG +
Sbjct: 172 LEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFV 229
Query: 305 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
AD+ +I +GA+P + GL G I VD T G+FA+GDVA++PL+ R
Sbjct: 230 ADSALICVGAEPADQLARQAGLACDRGVI-VDHCGATLAKGVFAVGDVASWPLRAGGR 286
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 144/332 (43%), Gaps = 29/332 (8%)
Query: 72 AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 128
AG A+ +FV G + +V EA PY+RP L+K ++ D + RL C
Sbjct: 15 AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 129 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 188
++ PE +E + S D + T+ + G+ L YG+L++ATG P
Sbjct: 69 ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 189 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 248
G +P VH +R + DA + + L + IG+E+AA A + +++ +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 307
L+ R +LA + + GV E G V V L+DG+ I AD
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 308 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 367
+V+GIG + GL GI VD RT P ++A+GDV + R R+E
Sbjct: 231 VVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIE 289
Query: 368 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 399
+A+ + L+ Y LP+++S
Sbjct: 290 TWSNAQNQGIAVARHLVDPTAPGYAELPWYWS 321
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 144/332 (43%), Gaps = 29/332 (8%)
Query: 72 AGYAARTFV---EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVG 128
AG A+ +FV G + +V EA PY+RP L+K ++ D + RL C
Sbjct: 15 AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC-- 68
Query: 129 SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE 188
++ PE +E + S D + T+ + G+ L YG+L++ATG P
Sbjct: 69 ----KRAPE------VEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT 118
Query: 189 KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 248
G +P VH +R + DA + + L + IG+E+AA A + +++ +
Sbjct: 119 LQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQ 177
Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADT 307
L+ R +LA + + GV E G V V L+DG+ I AD
Sbjct: 178 PRLMSRAAPATLADFVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADM 230
Query: 308 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 367
+V+GIG + GL GI VD RT P ++A+GDV + R R+E
Sbjct: 231 VVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIE 289
Query: 368 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYS 399
+A+ + L+ Y LP+++S
Sbjct: 290 TWSNAQNQGIAVARHLVDPTAPGYAELPWYFS 321
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 163/372 (43%), Gaps = 49/372 (13%)
Query: 88 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 56 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 113
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
+ G+ ++ V +D+ + N G + Y ++ATG T ++ G
Sbjct: 114 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 173
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 246
+ R + D +L + K ++G E+ A A+G K L T +I F
Sbjct: 174 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 232
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
PE + ++ L+ + ++ GVK + A ++++ S G++ +KL+DG ++ D
Sbjct: 233 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKL-LIKLKDGRKVETD 290
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 291 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR- 348
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 423
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG-Y 390
Query: 424 IEIGNFDPKIAT 435
+ IG D + T
Sbjct: 391 VAIGLVDSSLPT 402
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 88 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 75 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 132
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 133 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 192
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 246
+ R + D AL + K ++G E+ A A+G K ++ +F
Sbjct: 193 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 251
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
PE + ++ L+ + ++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 252 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 309
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 310 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 367
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 368 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 408
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 88 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 56 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 113
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 114 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 173
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 246
+ R + D AL + K ++G E+ A A+G K ++ +F
Sbjct: 174 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 232
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
PE + ++ L+ + ++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 233 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 290
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 291 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDIKLGRR- 348
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 389
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 88 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 80 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 137
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 138 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 197
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 246
+ R + D AL + K ++G E+ A A+G K ++ +F
Sbjct: 198 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSEL-ACALGRKSQASGIEVIQLF 256
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
PE + ++ L+ + ++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 257 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 314
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 315 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 372
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 373 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 413
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 157/358 (43%), Gaps = 48/358 (13%)
Query: 88 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 139
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 38 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 95
Query: 140 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 192
+ G+ ++ V +D+ + N G + Y ++ATG T ++ G
Sbjct: 96 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 155
Query: 193 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 246
+ R + D +L + K ++G E+ A A+G K L T +I F
Sbjct: 156 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSEL-ACALGRKARALGTEVIQLF 214
Query: 247 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 306
PE + ++ L+ + ++ GVK + A ++++ S G++ +KL+DG ++ D
Sbjct: 215 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKL-LIKLKDGRKVETD 272
Query: 307 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 363
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 273 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 330
Query: 364 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 331 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 371
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 13/233 (5%)
Query: 134 QTPEWYK-EKGIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 187
+ PE+++ K +E + + +ID +E + L T + LKY L++A G A+R P
Sbjct: 70 RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTI 244
+ G L GV + ++ +A+ + ++ + K +IG+E+A + A W +DTT+
Sbjct: 130 VE-GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 245 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 304
+ + ++ + SL+Q ++N V G + LE G +G+VA V + D T+D
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 305 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
AD +++ G P GL G I VD + RT P IFA GD P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 37/315 (11%)
Query: 137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 196
+WY+++GIE+ + ID ++ +IT G+ + Y +L++ATG A R P+ + G
Sbjct: 68 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARA-REPQ-----IKG 120
Query: 197 VHY---IRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253
Y +R + DAD + S+E + + +IG+E+A +I L
Sbjct: 121 KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG 180
Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313
L+ + + ++ GVKF + + LEA +G L + I+ + IG
Sbjct: 181 --LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEG-----VLTNSGFIEGKVKICAIG 231
Query: 314 AKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 373
P V R G+++ GI +D FRT ++AIGD A + + + A
Sbjct: 232 IVPNVDLARRSGIHTGR-GILIDDNFRTSAKDVYAIGDCAEY-------SGIIAGTAKAA 283
Query: 374 QSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKI 433
+ +L + Y++ F S VF++ K+ G+ GE G +
Sbjct: 284 MEQARVLADILKGEPRRYNF--KFRSTVFKF----GKLQIAIIGNTKGE----GKWIEDN 333
Query: 434 ATFWIDSGKLKGVLV 448
+ ++GK+ G +V
Sbjct: 334 TKVFYENGKIIGAVV 348
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 20/231 (8%)
Query: 135 TPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEK 189
+PE G + + VT++D E +T LITN K Y LI+ TG + P
Sbjct: 64 SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 190 IGGYLPG-----VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 244
+PG V+ ++ DA L KAK YIG E+A A + +
Sbjct: 122 ----IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL 177
Query: 245 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 304
I +L + F + Y+ +GV V G+ + E D + K DG I
Sbjct: 178 IDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIK 235
Query: 305 ADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
+D ++ IG +P + +V + + G I D + IFA GD AA
Sbjct: 236 SDIAILCIGFRPNTELLKGKVAMLDN-GAIITDEYMHSSNRDIFAAGDSAA 285
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 131/304 (43%), Gaps = 35/304 (11%)
Query: 63 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-----AYAPYERPALTKGYLFPLDKKP 117
+VI+GG A AA V + D +V+ E +YA P + G + +K
Sbjct: 39 YVIIGGDAAGMSAAMQIVRN---DENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLI 95
Query: 118 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKY 172
AR + + GI+ + VT +D EK+ + K Y
Sbjct: 96 AR--------------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSY 141
Query: 173 GSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGME 230
L++ATG PE G L GVH ++ + DA+ ++ +LE K + IG+E
Sbjct: 142 DRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLE 200
Query: 231 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 290
+A V +I +H + ++ +A+ + ++ ++ + ++K +
Sbjct: 201 MAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE-- 257
Query: 291 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAI 349
RV AV+ + G T AD +++ +G KP E + ++ G I+V+ +T + ++A
Sbjct: 258 RVEAVETDKG-TYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAA 316
Query: 350 GDVA 353
GD A
Sbjct: 317 GDCA 320
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 165 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXX 224
+S + + + I+ATG SR E LP + + D+ ++ E K
Sbjct: 127 DSAQTYTFKNAIIATG---SRPIE-----LPNFKFSNRILDSTGALNLGEVPKSLVVIGG 178
Query: 225 XYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 284
YIG+E+ A + TI+ +L F +A ++ ++ GV+ V A K
Sbjct: 179 GYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGA 237
Query: 285 EAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 340
E DG + + TIDAD +++ +G +P E++G+ ++ G I+VD Q R
Sbjct: 238 EEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 297
Query: 341 TRMPGIFAIGDVAAFP 356
T +P IFAIGD+ P
Sbjct: 298 TSVPNIFAIGDIVPGP 313
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 27/224 (12%)
Query: 158 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 217
E++ L+ +G+ L+ +++ATG +A P V Y R V +AL S E K
Sbjct: 116 ERKVLVEETGEELEARYILIATG-SAPLIPP-----WAQVDYERVVTSTEAL-SFPEVPK 168
Query: 218 KXXXXXXXYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSL----AQRYEQLYQQNG 272
+ IG+E+ V W +L +I E + R+ P++ ++ E+++++ G
Sbjct: 169 RLIVVGGGVIGLELG---VVWHRLGAEVIVLE--YMDRIL-PTMDLEVSRAAERVFKKQG 222
Query: 273 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNS-S 329
+ G + + + G A V+LE G ++AD +++ +G +P E GL++
Sbjct: 223 LTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDE 280
Query: 330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT----ARVEHV 369
G I VD RTR+P I+AIGDV P+ + + A VEH+
Sbjct: 281 RGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM 324
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%)
Query: 133 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 187
R + + GI+ + VT +D EK+ + K Y L++ATG P
Sbjct: 97 RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-XP 155
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
E G L GVH ++ + DA+ ++ +LE K + IG+E A V I
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXI 215
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
+H + ++ A+ + ++ ++ + ++K + RV AV+ + G T A
Sbjct: 216 ERNDH-IGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKA 271
Query: 306 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 354
D +++ +G KP E + ++ G I+V+ +T + ++A GD A
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCAT 321
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 34/247 (13%)
Query: 134 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 187
QTPE +K + +E+ + V +ID + + L+ S Y +L+++ G A P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G P H +R++ D D ++ +++ + +IG+E+ + + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 246 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 291
L ++ TP +A Q + GV G ++ + AG D
Sbjct: 181 ----ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 292 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 344
+K L +G ++ D +++ IG +P GL +GGI+V+ +T P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDP 296
Query: 345 GIFAIGD 351
I+A+GD
Sbjct: 297 AIYAVGD 303
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 119 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 178
PGF G + E K+ G Y D + D + +I K L ++I+A
Sbjct: 52 NFPGFEXITGPDLSTKXFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIA 111
Query: 179 TGCTASRFPEKIGGYLPGVHYI--RDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV 236
TG +KIG +PG + R V+ + K K+ +E
Sbjct: 112 TGAEY----KKIG--VPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLT 165
Query: 237 GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
+ TI+ + L QR+ ++ ++ + + F+ ++K++ DG+V +V
Sbjct: 166 KFADKVTIVHRRDELRAQRILQ-------DRAFKNDKIDFIWSHTLKSINE-KDGKVGSV 217
Query: 296 KL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 350
L +DGS T +AD + I IG KP +PF+ +G+ + VG I T +PGIFA G
Sbjct: 218 TLTSTKDGSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDXTTSVPGIFAAG 277
Query: 351 DV 352
DV
Sbjct: 278 DV 279
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
YIG+E A A G K+ I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
YIG+E A A G K+ I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
YIG+E A A G K+ I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
YIG+E A A G K+ I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
YIG+E A A G K+ I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308
N+L+ R F ++ + + NG++ + + + +DG V E G T+D D +
Sbjct: 223 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 281
Query: 309 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 361
++ IG P + + VG+ + GG+QVD RT +P I+AIGD+ P+ + +
Sbjct: 282 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 341
Query: 362 RTARVEHV--------DHAR 373
A V+ V DH R
Sbjct: 342 GAALVDTVFGNKPRKTDHTR 361
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308
N+L+ R F ++ + + NG++ + + + +DG V E G T+D D +
Sbjct: 226 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 284
Query: 309 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 361
++ IG P + + VG+ + GG+QVD RT +P I+AIGD+ P+ + +
Sbjct: 285 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 344
Query: 362 RTARVEHV--------DHAR 373
A V+ V DH R
Sbjct: 345 GAALVDTVFGNKPRKTDHTR 364
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 165 NSGKLLKYGSLIVATGCTASRFPEKIGGY------LPGVHYI---RDVADADALISSLEK 215
N+ KLL G + TA R +GG+ LPG + D AL S+
Sbjct: 121 NTVKLLASGKTV-----TAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILI 175
Query: 216 AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 275
A YI +E A G + TT+I+ +L R F + ++ G++
Sbjct: 176 A------GGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRI 228
Query: 276 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGG 332
+ I+++ A +DGR A + G + AD + + +G P + E G+ ++ +G
Sbjct: 229 LCEDIIQSVSADADGRRVATTXKHGEIV-ADQVXLALGRXPNTNGLGLEAAGVRTNELGA 287
Query: 333 IQVDGQFRTRMPGIFAIGDV 352
I VD RT PGI+A+GDV
Sbjct: 288 IIVDAFSRTSTPGIYALGDV 307
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 283 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
+EAG+ GR V A TI+ +T+++ +G E VG +N G I
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 335 VDGQFRTRMPGIFAIGDVAAFPLKM 359
V + +T +P I+AIGD+ L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 283 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
+EAG+ GR V A TI+ +T+++ +G E VG +N G I
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 335 VDGQFRTRMPGIFAIGDVAAFPLKM 359
V + +T +P I+AIGD+ L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 152 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211
VT ID Q + ++ +Y L++A G R P + G ++ I D+ D
Sbjct: 83 VTGIDPGHQRIWIGEEEV-RYRDLVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQ 140
Query: 212 SLEKAKKXXXXXXXYIGMEVA--AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 269
+ ++ IG E A ++ G++LD ++ P ++ L P+ A+ + +
Sbjct: 141 AAAGKRRVLLLGAGLIGCEFANDLSSGGYQLD--VVAPCEQVMPGLLHPAAAKAVQAGLE 198
Query: 270 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 329
GV+F G + +L+ +G A L DG I D +V +G +P GL +
Sbjct: 199 GLGVRFHLGPVLASLKKAGEGLEA--HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN 256
Query: 330 VGGIQVDGQFRTRMPGIFAIGDVA 353
G I VD RT I+A+GD A
Sbjct: 257 RG-IVVDRSLRTSHANIYALGDCA 279
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 137 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 189
E + G ++ + PV SID + +T L+ + Y LI ATG P K
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 190 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 241
L + +++ ++ +I+ LE K+ YIG+E+A A +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 242 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 301
+I + L + L + +++G++ G ++K E +G+V + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 302 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 360
D D +++ +G +P + ++ L + G V+ + T +PG++AIGD A +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 361 DRTAR 365
D R
Sbjct: 332 DNATR 336
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 137 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 189
E + G ++ + PV SID + +T L+ + Y LI ATG P K
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 190 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 241
L + +++ ++ +I+ LE K+ YIG+E+A A +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 242 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 301
+I + L + L + +++G++ G ++K E +G+V + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 302 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 360
D D +++ +G +P + ++ L + G V+ + T +PG++AIGD A +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 361 DRTAR 365
D R
Sbjct: 332 DNATR 336
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 15/204 (7%)
Query: 154 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 213
+++++K+ N+ ++ ++VATG A FPE I G+ G D+D
Sbjct: 134 NVEVQKRD---NTTEVYSANHILVATGGKAI-FPENIPGFELG-------TDSDGFFRLE 182
Query: 214 EKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 273
E+ KK YIG+E+A G +T ++ +L R F + Y + G+
Sbjct: 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGI 241
Query: 274 KFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSP-FERVGLN-SSV 330
K + I +E + + + D +I D D ++ IG K + E VG+ +S
Sbjct: 242 NVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH 301
Query: 331 GGIQVDGQFRTRMPGIFAIGDVAA 354
I D T +P I+++GDV
Sbjct: 302 DQIIADEYQNTNVPNIYSLGDVVG 325
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 226 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
YIG+E A A G K+ I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 341
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 342 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383
P +FA+GD D + +A + + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNL 313
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 214 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 271
Query: 283 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
+EAG+ GR+ V S + +T+++ IG E VG +N G I
Sbjct: 272 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 331
Query: 335 VDGQFRTRMPGIFAIGDV 352
V + +T +P I+AIGD+
Sbjct: 332 VTDEEQTNVPYIYAIGDI 349
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 29/238 (12%)
Query: 168 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXY 226
+++ ++++ATG + FP G+ D + SL+K +K
Sbjct: 137 QVIDTKNILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGV 188
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
IG+E+ + D T + H+ +++ ++++ Q+ G KF +
Sbjct: 189 IGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATK 248
Query: 287 GSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQ 338
SDG++ V +E S I D +++ IG +P E +G+ G I V+ +
Sbjct: 249 KSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTR 307
Query: 339 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 395
F+T++P I+AIGDV A P+ + A C++ + H Y+ +P
Sbjct: 308 FQTKIPNIYAIGDVVAGPMLAH----------KAEDEGIICVEGMAGGAVHIDYNCVP 355
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 29/238 (12%)
Query: 168 KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXY 226
+++ ++++ATG + FP G+ D + SL+K +K
Sbjct: 137 QVIDTKNILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGV 188
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
IG+E+ + D T + H+ +++ ++++ Q+ G KF +
Sbjct: 189 IGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATK 248
Query: 287 GSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQ 338
SDG++ V +E S I D +++ IG +P E +G+ G I V+ +
Sbjct: 249 KSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTR 307
Query: 339 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 395
F+T++P I+AIGDV A P+ + A C++ + H Y+ +P
Sbjct: 308 FQTKIPNIYAIGDVVAGPMLAH----------KAEDEGIICVEGMAGGAVHIDYNCVP 355
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 222 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 279
Query: 283 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
+EAG+ GR+ V S + +T+++ IG E VG +N G I
Sbjct: 280 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 339
Query: 335 VDGQFRTRMPGIFAIGDV 352
V + +T +P I+AIGD+
Sbjct: 340 VTDEEQTNVPYIYAIGDI 357
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 283 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
+EAG+ GR+ V S + +T+++ IG E VG +N G I
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 335 VDGQFRTRMPGIFAIGDV 352
V + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 282
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 283 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 334
+EAG+ GR+ V S + +T+++ IG E VG +N G I
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 335 VDGQFRTRMPGIFAIGDV 352
V + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 174 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 232
++++ATG + FP G+ D + SL+K +K IG+E+
Sbjct: 164 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 215
Query: 233 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 292
+ D T + H+ +++ ++++ Q+ G KF + SDG++
Sbjct: 216 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 275
Query: 293 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 344
V +E S I D +++ IG +P E +G+ G I V+ +F+T++P
Sbjct: 276 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 334
Query: 345 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 395
I+AIGDV A P+ + A C++ + H Y+ +P
Sbjct: 335 NIYAIGDVVAGPMLAH----------KAEDEGIICVEGMAGGAVHIDYNCVP 376
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 134 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 187
QTPE +K + +E+ + V +ID + + L+ S Y +L+++ G A P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G P H +R++ D D ++ +++ + +IG+E + + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 246 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 291
L ++ TP A Q + GV G ++ + AG D
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 292 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 344
+K L +G ++ D ++ IG +P GL +GGI+V+ +T P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 345 GIFAIGD 351
I+A+GD
Sbjct: 297 AIYAVGD 303
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 134 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 187
QTPE +K + +E+ + V +ID + + L+ S Y +L+++ G A P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 188 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G P H +R++ D D ++ +++ + +IG+E + + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 246 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 291
L ++ TP A Q + GV G ++ + AG D
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 292 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 344
+K L +G ++ D ++ IG +P GL +GGI+V+ +T P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 345 GIFAIGD 351
I+A+GD
Sbjct: 297 AIYAVGD 303
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309
++ R F +L + + NG++ + + +E +DG +V E G +D D ++
Sbjct: 224 EMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVM 282
Query: 310 IGIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRT 363
+ IG P + G+ GG+QVD RT + I+AIGDV P+ + +
Sbjct: 283 MAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAA 342
Query: 364 ARVEHV--------DHAR 373
A V+ V DH R
Sbjct: 343 ALVDTVFGTNPRKTDHTR 360
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 49/301 (16%)
Query: 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 121
+ +I+G G A AA+ + G D + +++ E Y PY RP L + + K +
Sbjct: 11 KILILGAGPAGFSAAKAAL--GKCDD-ITMINSEKYLPYYRPRLNE-----IIAKNKSID 62
Query: 122 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 181
+ +WY++ I++I + TSID + + SG+ +KY LI+A+G
Sbjct: 63 DILI--------KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGS 114
Query: 182 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK---KXXXXXXXYIGMEVAAAAV-- 236
A++ +P I + D + ++ K K +G+E+A A +
Sbjct: 115 IANKIK------VPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS 168
Query: 237 GWKLDTTII--FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 294
G II +P L R L + ++L G+K ++ + +
Sbjct: 169 GTPASIGIILEYPLERQLDRDGGLFLKDKLDRL----GIKIYTNSNFEEM---------- 214
Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
G I + ++ +G KP + + + +S GI V+ T + I+A GDVA
Sbjct: 215 -----GDLIRSSCVITAVGVKPNLDFIKDTEI-ASKRGILVNDHMETSIKDIYACGDVAE 268
Query: 355 F 355
F
Sbjct: 269 F 269
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
++ R F +L + + NG++ + + +E +DG +V E G +D D +++
Sbjct: 225 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 283
Query: 311 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYDRTA 364
IG P + G+ GG+QVD RT + I+AIGDV P+ + + A
Sbjct: 284 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 343
Query: 365 RVEHV--------DHAR 373
V+ V DH R
Sbjct: 344 LVDTVFGTTPRKTDHTR 360
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
++ R F +L + + NG++ + + +E +DG +V E G +D D +++
Sbjct: 226 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 284
Query: 311 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 364
IG P + G+ GG+QVD RT + I+AIGDV P+ + + A
Sbjct: 285 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 344
Query: 365 RVEHV--------DHAR 373
V+ V DH R
Sbjct: 345 LVDTVFGTTPRKTDHTR 361
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
++ R F +L + + NG++ + + +E +DG +V E G +D D +++
Sbjct: 224 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 282
Query: 311 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 364
IG P + G+ GG+QVD RT + I+AIGDV P+ + + A
Sbjct: 283 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 342
Query: 365 RVEHV--------DHAR 373
V+ V DH R
Sbjct: 343 LVDTVFGTTPRKTDHTR 359
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 157 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 216
++ +TL N G+ + +++ATG S P+ +PGV Y D+D +
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 217 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276
++ YI +E+A G T + F H R F P +++ ++ G +
Sbjct: 168 ERVAVVGAGYIAVELAGVINGLGAKTHL-FVRKHAPLRSFDPMISETLVEVMNAEGPQLH 226
Query: 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-I 333
A K + +DG + ++LEDG + D ++ IG +P E G+ ++ G I
Sbjct: 227 TNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYI 285
Query: 334 QVDGQFRTRMPGIFAIGD 351
VD T + GI+A+GD
Sbjct: 286 VVDKYQNTNIEGIYAVGD 303
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 27/241 (11%)
Query: 163 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKXXX 221
I ++K +I+ATG LPGV + + + ++ E KK
Sbjct: 131 IEGENTVVKGKHIIIATGSDVKS--------LPGVTIDEKKIVSSTGALALSEIPKKLVV 182
Query: 222 XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
YIG+E+ + + T++ + ++ + + +++++ ++ G+KF +
Sbjct: 183 IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM-DAEIRKQFQRSLEKQGMKFKLKTKV 241
Query: 282 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQV 335
++ DG V+ G + I+AD +++ G P S +++G+ + +G I V
Sbjct: 242 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILV 301
Query: 336 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYL 394
+ +F T + G++AIGDV P+ + A + C++ L H YD +
Sbjct: 302 NERFSTNVSGVYAIGDVIPGPMLAH----------KAEEDGVACVEYLAGKVGHVDYDKV 351
Query: 395 P 395
P
Sbjct: 352 P 352
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
V
Sbjct: 290 SV 291
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
V
Sbjct: 290 SV 291
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
V
Sbjct: 290 SV 291
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
V
Sbjct: 290 SV 291
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
V
Sbjct: 290 SV 291
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 63 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 120
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 121 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
+ + +L + Q + + + I + + + G
Sbjct: 178 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 230
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 290
Query: 365 RV 366
V
Sbjct: 291 SV 292
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 135 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 188
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 189 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 245
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 246 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 306 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 365 RV 366
V
Sbjct: 290 SV 291
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 169 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 227
LL +++ATG R+P ++ G L G+ +D + E K Y+
Sbjct: 171 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 222
Query: 228 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 287
+E A G LDTT++ L R F ++ + + +G +F+KG +++
Sbjct: 223 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 280
Query: 288 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGL--NSSVGGIQVDGQ 338
++ V ED + T DT++ IG P E+ G+ N I VD Q
Sbjct: 281 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 339
Query: 339 FRTRMPGIFAIGDVA 353
T +P I+AIGDVA
Sbjct: 340 EATSVPHIYAIGDVA 354
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 169 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 227
LL +++ATG R+P ++ G L G+ +D + E K Y+
Sbjct: 145 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 196
Query: 228 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 287
+E A G LDTT++ L R F ++ + + +G +F+KG +++
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 254
Query: 288 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGL--NSSVGGIQVDGQ 338
++ V ED + T DT++ IG P E+ G+ N I VD Q
Sbjct: 255 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 313
Query: 339 FRTRMPGIFAIGDVA 353
T +P I+AIGDVA
Sbjct: 314 EATSVPHIYAIGDVA 328
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 25/214 (11%)
Query: 152 VTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVH------YI 200
V I+ E++T+ TN Y LI++ G + I +PG+ +
Sbjct: 116 VVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA------KPIVPSIPGIEEAKALFTL 169
Query: 201 RDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTP 258
R+V D D + + ++ K + +IG+E ++ T++ N + +
Sbjct: 170 RNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIEVTLVEXANQVXPPIDYE 229
Query: 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 318
A +E + + V+ V + LE A V+L+ GS I D +++ IG +P
Sbjct: 230 XAAYVHEHX-KNHDVELVFEDGVDALEENG----AVVRLKSGSVIQTDXLILAIGVQPES 284
Query: 319 SPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGD 351
S + GL V G I+V+ +F+T P I+AIGD
Sbjct: 285 SLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 27/204 (13%)
Query: 157 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 216
++ +TL N G+ + +++ATG S P+ +PGV Y D+D +
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 217 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPSLAQRYEQLYQQ 270
++ YIG+E+ G T HL + F P +++ ++
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKT-------HLFEMFDAPLPSFDPMISETLVEVMNA 220
Query: 271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNS 328
G + A K + +DG + ++LEDG + D ++ IG +P E G+ +
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 329 SVGG-IQVDGQFRTRMPGIFAIGD 351
+ G I VD T + GI+A+GD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 288 SDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 343
S+G + V L DGS T++AD ++I IG K + P R L + VD +T +
Sbjct: 231 SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSV 290
Query: 344 PGIFAIGDVAAFPLKM 359
G++A GD+A +P K+
Sbjct: 291 DGLYAAGDIAYYPGKL 306
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)
Query: 135 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI- 190
T E + + I+++ V + D+E Q + + Y LI+ATG AS+F +I
Sbjct: 64 TEEELRRQKIQLLLNREVVAXDVENQLIAWTRKEEQQWYSYDKLILATG--ASQFSTQIR 121
Query: 191 GGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENH 250
G + + ++ A A + LE ++ IG E V K + +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXEAIDFLVKXKKTVHVFESLEN 181
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
LL + F ++ ++ V F ++ +E ++G V ++ I D+ +
Sbjct: 182 LLPKYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQE---ISCDSGIF 238
Query: 311 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 351
+ P ++ ++ + I VD +T +P +FAIGD
Sbjct: 239 ALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGD 279
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGSTIDADTIVIGIGAKP 316
+A++ ++ + G+ F GA + DG VK + +T+DA+ ++I G KP
Sbjct: 241 VAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKP 300
Query: 317 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 356
+ + G+ S G +++D F+T + G++AIGDV P
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 233
+I+A+G ++ LPGV Y D +S K + YIG+E+A+
Sbjct: 136 MIIASGAETAKLR------LPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIAS 189
Query: 234 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 293
+ T II + L L + + + N +KF + + ++ D
Sbjct: 190 IFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLN-IKF--NSPVTEVKKIKDDEYE 246
Query: 294 AV-KLEDGS--TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDGQFRTRMPGIFAI 349
+ +DGS +I +++V+ G +P + R +GL+ S GI VD +T +P +FA
Sbjct: 247 VIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFAT 306
Query: 350 GD 351
GD
Sbjct: 307 GD 308
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 11/180 (6%)
Query: 194 LPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253
P V I + +D + ++++KK YI +E+ +D+ I N +L+
Sbjct: 155 FPPVKGIENTISSDEFFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR 213
Query: 254 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGI 312
+ F S+ E ++N + V A + ++ SD ++ + L DG + D ++ +
Sbjct: 214 K-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 271
Query: 313 GAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 370
G P E++ + ++ I VD RT + I+A+GD M ++ +E ++
Sbjct: 272 GRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCC-----MVKKSKEIEDLN 326
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 285
YIG+E+ A +++ +L + L + ++ G+ G S++ E
Sbjct: 181 YIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 286 AG----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG--IQVDGQF 339
G +DG+ ++LE AD +++ +G +P F L+ + G I +D +
Sbjct: 240 NGCLLANDGKGGQLRLE------ADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293
Query: 340 RTRMPGIFAIGDVAAFPLKMYDRTARVEHV 369
+T M ++AIGDVA P+ + A+ E V
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 156 DIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 215
D+ K+ +T KY +++ATGC P+ + G ++++ I SL+K
Sbjct: 177 DLSKEETVTG-----KY--ILIATGCRP-HIPDDVEG-------AKELSITSDDIFSLKK 221
Query: 216 AK-KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 274
K Y+ +E + D T+ ++ R F A + + ++ GV
Sbjct: 222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS--IVLRGFDQQCAVKVKLYMEEQGVM 279
Query: 275 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG-- 332
F G K L D + V+ D ++ DT++ IG K + LN +V
Sbjct: 280 FKNGILPKKLTKMDDKIL--VEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSN 337
Query: 333 --IQVDGQFRTRMPGIFAIGDVA 353
I D T +P IFA+GDVA
Sbjct: 338 NKIIADHLSCTNIPSIFAVGDVA 360
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 206 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265
+D + ++ K+ YIG+E+A + + T++ E+ LL + F P L+
Sbjct: 156 SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLA 214
Query: 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGIGAKPTVSPF--E 322
+ G++ ++ LE D + + +DG+ ++ D+++ +G P E
Sbjct: 215 ENMHAQGIETHLEFAVAALE--RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLE 272
Query: 323 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 352
G+ S G + D T +PG++A+GD+
Sbjct: 273 AAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGA 314
+A+ ++ ++ G+ F + + + D V + +ED T ++A+ +++ +G
Sbjct: 226 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR 285
Query: 315 KPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 357
+P ++ E++GL G + +D QF ++ P I +GDV P+
Sbjct: 286 RPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM 331
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 33/211 (15%)
Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 233
+++ATG +P ++G +PG + + +A LE A K+ YI +E A
Sbjct: 176 ILIATG----SWPTRLG--VPGDEFC--ITSNEAFY--LEDAPKRMLCVGGGYIAVEFAG 225
Query: 234 AAVGWK-----LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 288
G+K +D + L+ R F + + + NG++ + +
Sbjct: 226 IFNGYKPCGGYVD---LCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNE 282
Query: 289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE------RVGLNSSVGGIQVDGQFRTR 342
DG V DG+ D D +++ IG P + R G N G +QVD +T
Sbjct: 283 DGS-NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKN---GAVQVDAYSKTS 338
Query: 343 MPGIFAIGDVAA----FPLKMYDRTARVEHV 369
+ I+AIGDV P+ + + A VE V
Sbjct: 339 VDNIYAIGDVTNRVMLTPVAINEGAAFVETV 369
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 8/153 (5%)
Query: 206 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265
+D L S + K YIG+E A G + T++ ++ R F +A+
Sbjct: 173 SDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVA 230
Query: 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPF 321
++ G+ F++ ++E DG++ V+ + S DT++ IG K V
Sbjct: 231 ASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDL 290
Query: 322 E--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 352
G+ I VD Q T + I+A+GD+
Sbjct: 291 NLPNAGVTVQKDKIPVDSQEATNVANIYAVGDI 323
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 33/211 (15%)
Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 233
+++ATG +P ++G +PG + + +A LE A K+ YI +E A
Sbjct: 176 ILIATG----SWPTRLG--VPGDEFC--ITSNEAFY--LEDAPKRMLCVGGGYIAVEFAG 225
Query: 234 AAVGWK-----LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 288
G+K +D + L+ R F + + + NG++ + +
Sbjct: 226 IFNGYKPCGGYVD---LCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNE 282
Query: 289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE------RVGLNSSVGGIQVDGQFRTR 342
DG V DG+ D D +++ IG P + R G N G +QVD +T
Sbjct: 283 DGS-NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKN---GAVQVDAYSKTS 338
Query: 343 MPGIFAIGDVAA----FPLKMYDRTARVEHV 369
+ I+AIGDV P+ + + A VE V
Sbjct: 339 VDNIYAIGDVTNRVMLTPVAINEGAAFVETV 369
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 8/153 (5%)
Query: 206 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265
+D L S + K YIG+E A G + T++ ++ R F +A+
Sbjct: 177 SDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVA 234
Query: 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPF 321
++ G+ F++ ++E DG++ V+ + S DT++ IG K V
Sbjct: 235 ASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDL 294
Query: 322 E--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 352
G+ I VD Q T + I+A+GD+
Sbjct: 295 NLPNAGVTVQKDKIPVDSQEATNVANIYAVGDI 327
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 8/153 (5%)
Query: 206 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265
+D L S + K YIG+E A G + T++ ++ R F +A+
Sbjct: 177 SDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVA 234
Query: 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPF 321
++ G+ F++ ++E DG++ V+ + S DT++ IG K V
Sbjct: 235 ASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDL 294
Query: 322 E--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 352
G+ I VD Q T + I+A+GD+
Sbjct: 295 NLPNAGVTVQKDKIPVDSQEATNVANIYAVGDI 327
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
++ R F L ++ + + NG+ + + +DG V E G+ D D +++
Sbjct: 224 MILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVML 282
Query: 311 GIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 352
IG P E+ G+ + G I+VD +T + I+AIGDV
Sbjct: 283 AIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
++ R F L ++ + + NG+ + + +DG V E G+ D D +++
Sbjct: 224 MILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVML 282
Query: 311 GIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 352
IG P E+ G+ + G I+VD +T + I+AIGDV
Sbjct: 283 AIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 243 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLED 299
T++ ++H+L A E+ + + GV+ KN A S R A V + D
Sbjct: 209 TVVASQDHVLP-YEDADAALVLEESFAERGVRL-----FKNARAASVTRTGAGVLVTMTD 262
Query: 300 GSTIDADTIVIGIGAKPTVS--PFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAF 355
G T++ ++ IG+ P S ERVG+ G + VD RT GI+A GD
Sbjct: 263 GRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGL 321
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTV 318
Y Q ++ + ++ A + + G +V VK +D +T I+ D + I +G P
Sbjct: 196 YVQEIKKRNIPYIMNAQVTEI-VGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQT 254
Query: 319 SPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 354
S + G+ G I VD + RT +PG++A GDV +
Sbjct: 255 SFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTS 291
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
++ R F L ++ + + NG+ + + +DG V E G+ D D +++
Sbjct: 225 MILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVML 283
Query: 311 GIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 352
IG P ++ G+ + G I+VD +T + I+AIGDV
Sbjct: 284 AIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 328
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 251 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310
++ R F L ++ + + NG+ + + +DG V E G+ D D +++
Sbjct: 225 MILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVML 283
Query: 311 GIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 352
IG P ++ G+ + G I+VD +T + I+AIGDV
Sbjct: 284 AIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 328
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 10/223 (4%)
Query: 136 PEWY-KEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGY 193
PE + K++GI++ V +D + N G K ++ L+ A G + + P G
Sbjct: 65 PEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGAS-PQVPAIEGVN 123
Query: 194 LPGVHYIRDVADADALISSLEKAK--KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHL 251
L GV DA A+ +EK K YIG+E+A A + T+I +
Sbjct: 124 LKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV 183
Query: 252 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 311
L+R F + E+ +++ ++ ++K + RV V + D A+ +++
Sbjct: 184 LRRSFDKEVTDILEEKLKKHVNLRLQEITMK---IEGEERVEKV-VTDAGEYKAELVILA 239
Query: 312 IGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 353
G KP + +++G+ G I + + +T + ++A GDVA
Sbjct: 240 TGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVA 282
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 303 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 359
++ D ++I G + P GL I+VD T +PG++A GD+ +P K+
Sbjct: 239 LEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTXATSIPGVYACGDIVTYPGKL 295
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 306 DTIVIGIGAKPT--VSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 357
D +++ G P + E+ G+ + G I+VD Q RT +P I+AIGD+ P+
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 330
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 306 DTIVIGIGAKPT--VSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 357
D +++ G P + E+ G+ + G I+VD Q RT +P I+AIGD+ P+
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 330
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVS 319
E + ++ V+FV + +K ++ D V V +E+ T ++ + + I IG P
Sbjct: 197 ETVKKKPNVEFVLNSVVKEIKG--DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTD 254
Query: 320 PFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAA 354
+ G+ + G I+VD RT +PG+FA GD +
Sbjct: 255 FAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS 290
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 33/233 (14%)
Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA 234
+I+ATG ++PE G G+ +D L S K Y+ +E A
Sbjct: 253 IILATG-ERPKYPEIPGAVEYGI-------TSDDLFSLPYFPGKTLVIGASYVALECAGF 304
Query: 235 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNLE-AGSDG 290
D T++ +L R F +A++ + +GVKF K IK L+ ++
Sbjct: 305 LASLGGDVTVMV--RSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTEN 362
Query: 291 RVAAVKLEDGSTIDA-------DTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDGQFR 340
+ L G D +T++ +G +P +S E VG+ G + +
Sbjct: 363 NKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQ 422
Query: 341 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY 393
T + ++AIGD+ A + + A Q+ ++ + L + T DY
Sbjct: 423 TTVSNVYAIGDINA---------GKPQLTPVAIQAGRYLARRLFAGATELTDY 466
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 33/233 (14%)
Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA 234
+I+ATG ++PE G G+ +D L S K Y+ +E A
Sbjct: 253 IILATG-ERPKYPEIPGAVEYGI-------TSDDLFSLPYFPGKTLVIGASYVALECAGF 304
Query: 235 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNLE-AGSDG 290
D T++ +L R F +A++ + +GVKF K IK L+ ++
Sbjct: 305 LASLGGDVTVMV--RSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTEN 362
Query: 291 RVAAVKLEDGSTIDA-------DTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDGQFR 340
+ L G D +T++ +G +P +S E VG+ G + +
Sbjct: 363 NKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQ 422
Query: 341 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY 393
T + ++AIGD+ A + + A Q+ ++ + L + T DY
Sbjct: 423 TTVSNVYAIGDINA---------GKPQLTPVAIQAGRYLARRLFAGATELTDY 466
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVS 319
E + ++ V+FV + +K ++ D V V +E+ T ++ + + I IG P
Sbjct: 197 ETVKKKPNVEFVLNSVVKEIKG--DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTD 254
Query: 320 PFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAA 354
+ G+ + G I+VD RT +PG+FA GD +
Sbjct: 255 FAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS 290
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 24/194 (12%)
Query: 175 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA 234
+I+ATG ++PE G G+ +D L S K Y+ +E A
Sbjct: 253 IILATG-ERPKYPEIPGAVEYGI-------TSDDLFSLPYFPGKTLVIGASYVALECAGF 304
Query: 235 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNLE-AGSDG 290
D T++ +L R F +A++ + +GVKF K IK L+ ++
Sbjct: 305 LASLGGDVTVMV--RSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTEN 362
Query: 291 RVAAVKLEDGSTIDA-------DTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDGQFR 340
+ L G D +T++ +G +P +S E VG+ G + +
Sbjct: 363 NKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQ 422
Query: 341 TRMPGIFAIGDVAA 354
T + ++AIGD+ A
Sbjct: 423 TTVSNVYAIGDINA 436
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 306 DTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 360
D +++ +G +P + + +S V G I VD +T +PG+FAIGDV M
Sbjct: 270 DKLIVAVGRRPVTTDL--LAADSGVTLDERGFIYVDDHCKTSVPGVFAIGDVVRGA--ML 325
Query: 361 DRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 395
A E V A + A H AQ + YD +P
Sbjct: 326 AHKASEEGVMVAERIAGH------KAQMN-YDLIP 353
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 22/177 (12%)
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
IG+E+ + + T++ + L + +A+ +++ + G+K + GA + E
Sbjct: 191 IGLELGSVWARLGAEVTVLEAMDKFLPAV-DEQVAKEAQKILTKQGLKILLGARVTGTEV 249
Query: 287 GSDGRVAAVKLED--GSTIDA-DTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQ 338
+ + VK D G A D +++ +G +P + + +S V G I VD
Sbjct: 250 KN--KQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDL--LAADSGVTLDERGFIYVDDY 305
Query: 339 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 395
T +PG++AIGDV M A E V A + A H AQ + YD +P
Sbjct: 306 CATSVPGVYAIGDVVRGA--MLAHKASEEGVVVAERIAGH------KAQMN-YDLIP 353
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 122 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 167
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 87 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 145
Query: 168 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 226
K +++ATG S E +I G G+ +D E + Y
Sbjct: 146 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 198
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 199 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 257
Query: 287 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 336
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 258 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 317
Query: 337 GQFRTRMPGIFAIGDVAAFPL 357
T + GI+A+GDV L
Sbjct: 318 EFQNTNVKGIYAVGDVCGKAL 338
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 122 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 167
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 168 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 226
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 256
Query: 287 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 336
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 337 GQFRTRMPGIFAIGDVAAFPL 357
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 122 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 167
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 168 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 226
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 256
Query: 287 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 336
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 337 GQFRTRMPGIFAIGDVAAFPL 357
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 122 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 167
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 85 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 143
Query: 168 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 226
K +++ATG S E +I G G+ +D E + Y
Sbjct: 144 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 196
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 197 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 255
Query: 287 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 336
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 256 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 315
Query: 337 GQFRTRMPGIFAIGDVAAFPL 357
T + GI+A+GDV L
Sbjct: 316 EFQNTNVKGIYAVGDVCGKAL 336
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 122 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 167
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 168 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 226
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 256
Query: 287 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 336
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 337 GQFRTRMPGIFAIGDVAAFPL 357
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 122 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 167
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 69 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 127
Query: 168 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 226
K +++ATG S E +I G G+ +D E + Y
Sbjct: 128 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 180
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 181 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 239
Query: 287 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 336
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 240 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 299
Query: 337 GQFRTRMPGIFAIGDVAAFPL 357
T + GI+A+GDV L
Sbjct: 300 EFQNTNVKGIYAVGDVCGKAL 320
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 49/131 (37%), Gaps = 37/131 (28%)
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 50 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 88
Query: 296 KLEDGSTIDADTIVIGIGAKPTVSPFERV-GLNSSVGGIQ----VDGQFRT--------R 342
L DG+T+ D ++I G K FE V G + G +Q VD R R
Sbjct: 89 TLADGNTVHYDYLMIATGPKLA---FENVPGSDPHEGPVQSICTVDAAERAFAEYQALLR 145
Query: 343 MPGIFAIGDVA 353
PG IG +A
Sbjct: 146 EPGPIVIGAMA 156
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 122 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 167
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 168 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 226
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 256
Query: 287 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 336
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 337 GQFRTRMPGIFAIGDVAAFPL 357
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 170 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGM 229
+ + + I+ATG +++R +PG +V + I S E K IGM
Sbjct: 135 VTFDNAIIATG-SSTRL-------VPGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGM 186
Query: 230 EVAAAAVGWKLDTTIIFPENHLLQRLF---TPSLAQRYEQLYQQNGVKFVKGASIKNL-E 285
E + +D TI+ L R +++ E+ +++ GV + ++++ +
Sbjct: 187 EFGYVLKNYGVDVTIV----EFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIAD 242
Query: 286 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTR 342
GS V K + A+ ++ IG P V + ++ G+ + I VD RT
Sbjct: 243 GGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTN 302
Query: 343 MPGIFAIGDV 352
+ I+AIGDV
Sbjct: 303 VGHIYAIGDV 312
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 122 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 167
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 168 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 226
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNXTEELENAGVEVLKFSQVKEVKK 256
Query: 287 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 336
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 337 GQFRTRMPGIFAIGDVAAFPL 357
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 122 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 167
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 69 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 127
Query: 168 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 226
K +++ATG S E +I G G+ +D E + Y
Sbjct: 128 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 180
Query: 227 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 181 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 239
Query: 287 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 336
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 240 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 299
Query: 337 GQFRTRMPGIFAIGDVAAFPL 357
T + GI+A+GDV L
Sbjct: 300 EFQNTNVKGIYAVGDVCGKAL 320
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 285
YI +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 182 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVK 240
Query: 286 AGSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQV 335
G V AV +L + I D D ++ IG P ++G+ + G I V
Sbjct: 241 KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIV 300
Query: 336 DGQFRTRMPGIFAIGDVAAFPL 357
D T + GI+A+GDV L
Sbjct: 301 DEFQNTNVKGIYAVGDVCGKAL 322
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 31/128 (24%)
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 53 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 91
Query: 296 KLEDGSTIDADTIVIGIGAK----------PTVSPFERVGLNSSVGGIQVDGQFRTRMPG 345
L DG+T+ D ++I G K P P + + + Q R PG
Sbjct: 92 TLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSIATVDHAERAFAEYQALLREPG 151
Query: 346 IFAIGDVA 353
IG +A
Sbjct: 152 PIVIGAMA 159
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 53 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 91
Query: 296 KLEDGSTIDADTIVIGIGAK 315
L DG+T+ D ++I G K
Sbjct: 92 TLADGNTVHYDYLMIATGPK 111
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 53 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 91
Query: 296 KLEDGSTIDADTIVIGIGAK 315
L DG+T+ D ++I G K
Sbjct: 92 TLADGNTVHYDYLMIATGPK 111
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 53 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 91
Query: 296 KLEDGSTIDADTIVIGIGAK 315
L DG+T+ D ++I G K
Sbjct: 92 TLADGNTVHYDYLMIATGPK 111
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 53 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 91
Query: 296 KLEDGSTIDADTIVIGIGAK 315
L DG+T+ D ++I G K
Sbjct: 92 TLADGNTVHYDYLMIATGPK 111
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 50 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 88
Query: 296 KLEDGSTIDADTIVIGIGAK 315
L DG+T+ D ++I G K
Sbjct: 89 TLADGNTVHYDYLMIATGPK 108
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 236 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 53 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 91
Query: 296 KLEDGSTIDADTIVIGIGAK 315
L DG+T+ D ++I G K
Sbjct: 92 TLADGNTVHYDYLMIATGPK 111
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 312 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 312 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 312 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 312 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 362
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 309 VIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364
++G+G T P V + + GG+ VD RT + G++AIG+V+ L +R A
Sbjct: 332 LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMA 388
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 354
VK + ++ D +++ G ++ P + GL+ I V T + G FA GD+
Sbjct: 229 VKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICT 288
Query: 355 FPLKM 359
+ K+
Sbjct: 289 YEGKV 293
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 30/207 (14%)
Query: 164 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKXXX 221
T SG +LK S+I+ATG +PG R V L K K+
Sbjct: 307 TASGAVLKARSIIIATGAKWRNM------NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAV 360
Query: 222 XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
G+E A +D I LL+ F P + + +Q+ Q + V+ +K I
Sbjct: 361 IGGGNSGVEAA-------IDLAGIVEHVTLLE--FAPEM--KADQVLQ-DKVRSLKNVDI 408
Query: 282 ----KNLEAGSDG-RVAAVKLEDGSTIDADTIVIG-----IGAKPTVSPFERVGLNSSVG 331
+ E DG +V ++ D + D ++ + IG P E + +G
Sbjct: 409 ILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMG 468
Query: 332 GIQVDGQFRTRMPGIFAIGDVAAFPLK 358
I +D + T + G+FA GD P K
Sbjct: 469 EIIIDAKCETSVKGVFAAGDCTTVPYK 495
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 79/208 (37%), Gaps = 32/208 (15%)
Query: 164 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKXXX 221
T SG +LK S+IVATG +PG R V L K K+
Sbjct: 96 TASGAVLKARSIIVATGAKWRNMN------VPGEDQYRTKGVTYCPHCDGPLFKGKRVAV 149
Query: 222 XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 281
G+E A +D I LL+ F P + + +Q+ Q ++ +K I
Sbjct: 150 IGGGNSGVEAA-------IDLAGIVEHVTLLE--FAPEM--KADQVLQDK-LRSLKNVDI 197
Query: 282 ----KNLEAGSDGRVAAVKLE-------DGSTIDADTIVIGIGAKPTVSPFERVGLNSSV 330
+ E DG V LE D I+ I + IG P + E + +
Sbjct: 198 ILNAQTTEVKGDGS-KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRM 256
Query: 331 GGIQVDGQFRTRMPGIFAIGDVAAFPLK 358
G I +D + T + G+FA GD P K
Sbjct: 257 GEIIIDAKCETNVKGVFAAGDCTTVPYK 284
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 309 VIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFRTRMPGIFAIGDVA 353
++G+G T P V + + GG+ VD RT + G++AIG+V+
Sbjct: 332 LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVS 377
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 138 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKI 190
WY E Y+ + ++I Q L + K Y IV +GCT R P+K+
Sbjct: 209 WYTPIRREWYYEVIIVRVEINGQDLKMDC-KEYNYDKSIVDSGCTNLRLPKKV 260
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 331 GGIQVDGQFRTRMPGIFAIGDVAAFPL 357
G I+V+ + T +PG++AIGD A PL
Sbjct: 289 GFIRVNARMETSVPGVYAIGDAARPPL 315
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 19/190 (10%)
Query: 170 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGM 229
+ + + I+ATG +++R +PG +V + I S E K IG
Sbjct: 133 VTFDNAIIATG-SSTRL-------VPGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGX 184
Query: 230 EVAAAAVGWKLDTTIIFPENHLLQRLF---TPSLAQRYEQLYQQNGVKFVKGASIKNL-E 285
E + +D TI+ L R +++ E+ +++ GV + ++++ +
Sbjct: 185 EFGYVLKNYGVDVTIV----EFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIAD 240
Query: 286 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTR 342
GS V K + A+ ++ IG P V + ++ G+ + I VD RT
Sbjct: 241 GGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYXRTN 300
Query: 343 MPGIFAIGDV 352
+ I+AIGDV
Sbjct: 301 VGHIYAIGDV 310
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 329 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-------TARVEHVDHARQSAQHCIK 381
S+GGI+ D + ++ G+F+ G+ A + + ++R A V + A+HC
Sbjct: 371 SMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCAN 430
Query: 382 ALLSAQTHTYD 392
+ +T T +
Sbjct: 431 TQVDLETKTLE 441
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 329 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-------TARVEHVDHARQSAQHCIK 381
S+GGI+ D + ++ G+F+ G+ A + + ++R A V + A+HC
Sbjct: 371 SMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCAN 430
Query: 382 ALLSAQTHTYD 392
+ +T T +
Sbjct: 431 TQVDLETKTLE 441
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 329 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-------TARVEHVDHARQSAQHCIK 381
S+GGI+ D + ++ G+F+ G+ A + + ++R A V + A+HC
Sbjct: 371 SMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCAN 430
Query: 382 ALLSAQTHTYD 392
+ +T T +
Sbjct: 431 TQVDLETKTLE 441
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 302 TIDADTIVIGIGAKPTVSPFERVGLN---SSVGGIQVDGQFRTRMPGIFAIGDV 352
T+ + +++ +G +P +N + G +++ F T +P ++AIGDV
Sbjct: 262 TVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,423,561
Number of Sequences: 62578
Number of extensions: 613047
Number of successful extensions: 1678
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1519
Number of HSP's gapped (non-prelim): 161
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)