Query 010917
Match_columns 497
No_of_seqs 485 out of 4184
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:02:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 1.4E-58 3.1E-63 464.5 48.7 390 60-478 3-394 (396)
2 KOG1336 Monodehydroascorbate/f 100.0 5.9E-55 1.3E-59 417.1 37.3 402 60-487 74-477 (478)
3 TIGR02374 nitri_red_nirB nitri 100.0 2E-48 4.4E-53 418.4 45.8 377 63-470 1-383 (785)
4 PRK14989 nitrite reductase sub 100.0 3.8E-48 8.2E-53 415.3 47.1 381 60-470 3-394 (847)
5 PRK04965 NADH:flavorubredoxin 100.0 1.1E-47 2.3E-52 383.7 43.5 362 60-455 2-367 (377)
6 COG1251 NirB NAD(P)H-nitrite r 100.0 3E-47 6.5E-52 380.0 33.2 380 60-470 3-388 (793)
7 PRK13512 coenzyme A disulfide 100.0 7.4E-46 1.6E-50 376.4 41.2 398 61-489 2-435 (438)
8 PRK09564 coenzyme A disulfide 100.0 1.1E-45 2.4E-50 377.9 40.0 398 62-484 2-433 (444)
9 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.2E-44 4.8E-49 358.0 33.7 396 58-488 2-454 (454)
10 PRK06370 mercuric reductase; V 100.0 1.5E-43 3.2E-48 363.0 35.7 403 57-493 2-458 (463)
11 PRK05249 soluble pyridine nucl 100.0 1.3E-42 2.8E-47 356.5 38.5 403 57-493 2-458 (461)
12 TIGR01421 gluta_reduc_1 glutat 100.0 1.3E-42 2.7E-47 353.4 35.4 392 60-487 2-449 (450)
13 PRK06416 dihydrolipoamide dehy 100.0 1.8E-42 3.9E-47 355.3 34.3 401 59-493 3-457 (462)
14 PRK06116 glutathione reductase 100.0 4E-42 8.7E-47 351.4 36.5 392 60-488 4-450 (450)
15 PRK06467 dihydrolipoamide dehy 100.0 3.3E-42 7.1E-47 352.4 35.6 402 59-494 3-461 (471)
16 TIGR01424 gluta_reduc_2 glutat 100.0 5.4E-42 1.2E-46 349.3 36.6 391 60-487 2-445 (446)
17 PRK14694 putative mercuric red 100.0 4.6E-42 9.9E-47 351.9 35.2 401 57-492 3-457 (468)
18 PRK06115 dihydrolipoamide dehy 100.0 5.9E-42 1.3E-46 350.3 35.6 401 60-494 3-462 (466)
19 PLN02507 glutathione reductase 100.0 3.6E-41 7.8E-46 345.8 40.9 396 58-488 23-483 (499)
20 PRK08010 pyridine nucleotide-d 100.0 1.5E-41 3.2E-46 346.3 36.0 396 59-489 2-438 (441)
21 PRK05976 dihydrolipoamide dehy 100.0 2.9E-41 6.2E-46 346.7 37.3 403 59-492 3-466 (472)
22 PTZ00058 glutathione reductase 100.0 2.9E-41 6.3E-46 347.4 37.2 410 57-491 45-560 (561)
23 COG1252 Ndh NADH dehydrogenase 100.0 3.4E-42 7.3E-47 333.5 27.7 308 59-397 2-340 (405)
24 PRK07845 flavoprotein disulfid 100.0 1.6E-41 3.4E-46 347.2 33.9 400 60-493 1-461 (466)
25 TIGR02053 MerA mercuric reduct 100.0 3.7E-41 8.1E-46 345.5 36.0 398 61-493 1-453 (463)
26 PRK07818 dihydrolipoamide dehy 100.0 2.8E-41 6E-46 346.2 34.0 397 60-494 4-462 (466)
27 PLN02546 glutathione reductase 100.0 1.1E-41 2.3E-46 350.9 30.4 393 59-488 78-532 (558)
28 PRK07846 mycothione reductase; 100.0 6E-40 1.3E-44 333.6 38.3 392 61-491 2-449 (451)
29 PRK07251 pyridine nucleotide-d 100.0 1.2E-40 2.6E-45 339.3 33.2 393 60-488 3-436 (438)
30 PRK13748 putative mercuric red 100.0 2.4E-40 5.2E-45 347.8 35.7 399 59-493 97-551 (561)
31 TIGR01423 trypano_reduc trypan 100.0 1.3E-40 2.8E-45 339.5 31.9 394 59-488 2-471 (486)
32 PTZ00153 lipoamide dehydrogena 100.0 1.2E-39 2.7E-44 339.3 37.4 319 144-492 249-654 (659)
33 PRK09853 putative selenate red 100.0 5.9E-41 1.3E-45 356.7 27.6 345 12-402 479-856 (1019)
34 PRK14727 putative mercuric red 100.0 1.1E-39 2.4E-44 334.8 34.7 399 59-492 15-468 (479)
35 PTZ00318 NADH dehydrogenase-li 100.0 2.6E-40 5.7E-45 334.4 29.7 308 58-398 8-358 (424)
36 PRK06912 acoL dihydrolipoamide 100.0 1.3E-39 2.8E-44 332.9 34.7 397 62-493 2-453 (458)
37 TIGR01438 TGR thioredoxin and 100.0 4.9E-39 1.1E-43 328.8 38.6 394 60-490 2-470 (484)
38 TIGR01350 lipoamide_DH dihydro 100.0 2.1E-39 4.7E-44 332.9 35.7 400 61-493 2-456 (461)
39 TIGR03452 mycothione_red mycot 100.0 2.6E-39 5.6E-44 329.3 35.6 317 142-491 105-452 (452)
40 TIGR01316 gltA glutamate synth 100.0 7.8E-41 1.7E-45 339.9 24.3 331 12-384 68-446 (449)
41 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.2E-38 2.7E-43 323.9 39.3 371 74-470 1-403 (427)
42 PRK12831 putative oxidoreducta 100.0 2.2E-40 4.8E-45 337.0 25.5 334 12-385 80-458 (464)
43 PRK06292 dihydrolipoamide dehy 100.0 2.1E-39 4.6E-44 332.6 32.4 398 59-494 2-456 (460)
44 PRK06327 dihydrolipoamide dehy 100.0 6.7E-39 1.4E-43 328.9 35.5 401 59-493 3-470 (475)
45 PTZ00052 thioredoxin reductase 100.0 7.4E-39 1.6E-43 329.1 32.8 393 60-488 5-478 (499)
46 PRK12779 putative bifunctional 100.0 2.8E-38 6E-43 342.2 28.3 330 12-385 240-624 (944)
47 KOG1346 Programmed cell death 100.0 1.9E-38 4.2E-43 295.2 22.9 405 59-470 177-646 (659)
48 TIGR03169 Nterm_to_SelD pyridi 100.0 2E-37 4.3E-42 308.8 30.1 293 62-385 1-308 (364)
49 KOG1335 Dihydrolipoamide dehyd 100.0 1.2E-37 2.7E-42 287.6 25.1 403 59-493 38-500 (506)
50 PRK11749 dihydropyrimidine deh 100.0 7.1E-38 1.5E-42 320.0 24.3 331 12-385 80-449 (457)
51 TIGR03315 Se_ygfK putative sel 100.0 1.5E-37 3.1E-42 332.7 25.9 326 12-386 477-838 (1012)
52 PRK12778 putative bifunctional 100.0 2.5E-37 5.5E-42 333.1 24.9 332 12-385 369-747 (752)
53 PRK12810 gltD glutamate syntha 100.0 3E-37 6.4E-42 315.8 23.2 337 12-385 84-462 (471)
54 TIGR01318 gltD_gamma_fam gluta 100.0 2.2E-36 4.8E-41 308.2 25.3 332 12-385 80-463 (467)
55 PRK12814 putative NADPH-depend 100.0 2.5E-36 5.3E-41 319.1 24.7 331 12-384 134-497 (652)
56 PRK12775 putative trifunctiona 100.0 2.6E-36 5.6E-41 329.9 24.8 332 12-384 371-751 (1006)
57 TIGR01292 TRX_reduct thioredox 100.0 7E-35 1.5E-39 283.1 28.3 284 61-384 1-297 (300)
58 PRK12769 putative oxidoreducta 100.0 5.5E-35 1.2E-39 310.3 27.0 332 12-385 266-649 (654)
59 TIGR01317 GOGAT_sm_gam glutama 100.0 6.7E-35 1.5E-39 298.4 24.1 337 12-385 84-476 (485)
60 TIGR03140 AhpF alkyl hydropero 100.0 8.8E-35 1.9E-39 300.6 22.7 287 58-384 210-509 (515)
61 PRK10262 thioredoxin reductase 100.0 1.1E-34 2.3E-39 283.8 21.9 273 58-356 4-292 (321)
62 KOG0405 Pyridine nucleotide-di 100.0 4E-33 8.6E-38 254.6 27.5 375 58-467 18-449 (478)
63 PRK12809 putative oxidoreducta 100.0 6.2E-34 1.3E-38 300.9 25.6 332 12-385 249-632 (639)
64 PRK13984 putative oxidoreducta 100.0 5.6E-34 1.2E-38 301.1 24.3 328 13-384 224-598 (604)
65 PRK15317 alkyl hydroperoxide r 100.0 3E-33 6.5E-38 289.6 27.0 288 58-384 209-508 (517)
66 COG0446 HcaD Uncharacterized N 100.0 5E-32 1.1E-36 275.2 34.5 324 63-405 1-328 (415)
67 COG0492 TrxB Thioredoxin reduc 100.0 3.3E-33 7.1E-38 265.4 23.9 266 59-357 2-279 (305)
68 TIGR03143 AhpF_homolog putativ 100.0 1.5E-32 3.3E-37 285.9 28.3 285 59-383 3-304 (555)
69 PRK12771 putative glutamate sy 100.0 2.6E-32 5.6E-37 285.6 24.0 330 12-384 79-440 (564)
70 PRK12770 putative glutamate sy 100.0 1.1E-31 2.3E-36 265.5 25.1 289 57-385 15-347 (352)
71 KOG2495 NADH-dehydrogenase (ub 100.0 2.5E-30 5.5E-35 243.3 20.8 294 57-383 52-392 (491)
72 PLN02852 ferredoxin-NADP+ redu 100.0 6.5E-29 1.4E-33 250.2 24.1 294 57-384 23-418 (491)
73 KOG4716 Thioredoxin reductase 100.0 1.1E-27 2.4E-32 218.2 21.4 208 169-396 159-377 (503)
74 TIGR01372 soxA sarcosine oxida 100.0 2.9E-27 6.3E-32 260.6 28.9 281 59-384 162-468 (985)
75 PRK06567 putative bifunctional 99.9 1.3E-26 2.7E-31 244.0 22.8 287 11-321 309-733 (1028)
76 KOG0404 Thioredoxin reductase 99.9 2E-26 4.4E-31 198.4 16.2 278 58-355 6-295 (322)
77 COG0493 GltD NADPH-dependent g 99.9 1.3E-26 2.9E-31 231.1 15.1 337 12-384 62-447 (457)
78 COG3634 AhpF Alkyl hydroperoxi 99.9 3.2E-26 7E-31 209.4 14.1 271 58-358 209-494 (520)
79 PLN02172 flavin-containing mon 99.9 1.9E-24 4.1E-29 218.9 21.7 289 57-387 7-352 (461)
80 KOG0399 Glutamate synthase [Am 99.9 1.4E-23 3.1E-28 215.4 13.4 331 12-381 1726-2117(2142)
81 PF00743 FMO-like: Flavin-bind 99.9 9.9E-22 2.1E-26 201.6 17.6 300 60-387 1-396 (531)
82 KOG2755 Oxidoreductase [Genera 99.9 1.7E-21 3.8E-26 172.1 13.2 265 62-355 1-322 (334)
83 KOG3851 Sulfide:quinone oxidor 99.8 2.5E-20 5.4E-25 169.2 15.3 295 57-384 36-357 (446)
84 PF07992 Pyr_redox_2: Pyridine 99.8 1E-22 2.2E-27 185.6 -0.6 188 62-356 1-200 (201)
85 PF13738 Pyr_redox_3: Pyridine 99.8 3.6E-18 7.8E-23 155.8 11.0 178 64-251 1-202 (203)
86 PTZ00188 adrenodoxin reductase 99.7 2E-16 4.2E-21 157.2 18.5 289 58-383 37-439 (506)
87 PF13434 K_oxygenase: L-lysine 99.7 2.7E-16 5.9E-21 153.3 15.4 248 61-315 3-340 (341)
88 KOG1800 Ferredoxin/adrenodoxin 99.7 3.9E-16 8.4E-21 145.6 15.0 156 57-236 17-179 (468)
89 COG1148 HdrA Heterodisulfide r 99.7 3.3E-15 7.2E-20 143.5 20.8 179 169-356 298-524 (622)
90 COG2072 TrkA Predicted flavopr 99.7 5.9E-16 1.3E-20 156.5 16.0 184 57-252 5-211 (443)
91 COG3486 IucD Lysine/ornithine 99.7 1.4E-14 3E-19 137.4 23.9 293 57-355 2-388 (436)
92 KOG1399 Flavin-containing mono 99.7 5.7E-16 1.2E-20 154.2 15.2 243 58-325 4-278 (448)
93 PRK05329 anaerobic glycerol-3- 99.6 2.8E-14 6.2E-19 142.2 21.8 158 220-385 219-418 (422)
94 COG4529 Uncharacterized protei 99.5 1.7E-12 3.6E-17 126.9 21.7 313 60-384 1-459 (474)
95 PF00070 Pyr_redox: Pyridine n 99.5 3E-13 6.4E-18 103.1 11.2 80 218-300 1-80 (80)
96 PRK09897 hypothetical protein; 99.4 2.7E-10 5.8E-15 117.1 25.2 170 60-238 1-213 (534)
97 COG2081 Predicted flavoprotein 99.3 5.5E-12 1.2E-16 120.3 8.7 121 59-182 2-166 (408)
98 TIGR03378 glycerol3P_GlpB glyc 99.3 4.8E-10 1E-14 110.7 20.0 126 253-383 258-418 (419)
99 COG0029 NadB Aspartate oxidase 99.1 2.7E-10 5.8E-15 111.4 9.9 56 330-386 341-396 (518)
100 PF03486 HI0933_like: HI0933-l 99.1 9.8E-11 2.1E-15 116.7 4.6 120 61-183 1-166 (409)
101 PRK08401 L-aspartate oxidase; 99.1 7.7E-10 1.7E-14 113.6 10.8 33 61-96 2-34 (466)
102 COG3075 GlpB Anaerobic glycero 99.0 3.3E-09 7.1E-14 98.0 12.9 129 252-385 252-415 (421)
103 TIGR00551 nadB L-aspartate oxi 99.0 6.5E-09 1.4E-13 107.5 14.8 56 329-385 332-387 (488)
104 PRK12842 putative succinate de 99.0 7.4E-10 1.6E-14 116.7 7.5 107 210-317 151-276 (574)
105 COG0579 Predicted dehydrogenas 99.0 1.1E-08 2.5E-13 101.0 14.8 217 59-328 2-222 (429)
106 PF14759 Reductase_C: Reductas 99.0 6.5E-09 1.4E-13 79.6 9.6 76 396-479 1-79 (85)
107 PRK07804 L-aspartate oxidase; 98.9 5.5E-08 1.2E-12 101.7 18.9 37 58-97 14-50 (541)
108 PRK06452 sdhA succinate dehydr 98.9 2E-07 4.4E-12 97.9 21.9 35 59-96 4-38 (566)
109 PRK09231 fumarate reductase fl 98.9 3.3E-08 7.1E-13 104.1 14.9 36 60-96 4-39 (582)
110 PRK06847 hypothetical protein; 98.9 9.4E-09 2E-13 103.0 10.1 123 59-184 3-164 (375)
111 PRK07395 L-aspartate oxidase; 98.9 1.8E-08 3.9E-13 105.2 12.1 36 58-97 7-42 (553)
112 PRK08071 L-aspartate oxidase; 98.8 1.3E-07 2.8E-12 98.2 18.2 55 330-385 332-386 (510)
113 PRK09077 L-aspartate oxidase; 98.8 4E-07 8.8E-12 95.2 21.6 56 329-385 352-407 (536)
114 PLN02815 L-aspartate oxidase 98.8 3.4E-07 7.5E-12 96.1 20.0 34 60-97 29-62 (594)
115 PRK08275 putative oxidoreducta 98.8 2.2E-08 4.8E-13 105.1 11.2 38 59-97 8-45 (554)
116 PF01266 DAO: FAD dependent ox 98.8 4.1E-08 9E-13 97.4 12.2 67 257-326 146-212 (358)
117 PRK06069 sdhA succinate dehydr 98.8 5.2E-08 1.1E-12 102.8 13.2 39 59-97 4-42 (577)
118 TIGR01176 fum_red_Fp fumarate 98.8 3.8E-08 8.2E-13 103.4 11.8 36 60-96 3-38 (580)
119 PRK13800 putative oxidoreducta 98.8 4.2E-08 9E-13 108.5 12.3 36 59-97 12-47 (897)
120 PRK10015 oxidoreductase; Provi 98.8 2.8E-08 6.1E-13 100.9 9.3 123 58-183 3-164 (429)
121 PRK10157 putative oxidoreducta 98.8 2.9E-08 6.3E-13 100.9 9.4 121 58-183 3-164 (428)
122 COG0644 FixC Dehydrogenases (f 98.7 3.1E-08 6.8E-13 99.7 9.4 123 59-184 2-153 (396)
123 PRK06854 adenylylsulfate reduc 98.7 5.1E-08 1.1E-12 103.1 11.3 35 60-97 11-47 (608)
124 TIGR01292 TRX_reduct thioredox 98.7 1.3E-07 2.7E-12 91.7 13.0 99 218-319 2-115 (300)
125 TIGR02032 GG-red-SF geranylger 98.7 5.3E-08 1.2E-12 94.0 10.0 120 61-183 1-148 (295)
126 PRK07843 3-ketosteroid-delta-1 98.7 8.2E-09 1.8E-13 108.2 4.6 108 215-324 159-278 (557)
127 PLN02463 lycopene beta cyclase 98.7 4.6E-08 1E-12 99.1 9.8 124 57-184 25-170 (447)
128 PRK07512 L-aspartate oxidase; 98.7 1.6E-07 3.5E-12 97.5 13.7 55 330-385 341-395 (513)
129 PRK07251 pyridine nucleotide-d 98.7 5.7E-08 1.2E-12 99.4 10.2 97 60-184 157-254 (438)
130 PRK06834 hypothetical protein; 98.7 8.3E-08 1.8E-12 99.0 11.3 123 59-184 2-157 (488)
131 COG2081 Predicted flavoprotein 98.7 2.5E-07 5.4E-12 88.9 13.5 110 217-328 4-188 (408)
132 TIGR02061 aprA adenosine phosp 98.7 1.2E-07 2.5E-12 99.7 12.2 33 62-97 1-37 (614)
133 PRK11728 hydroxyglutarate oxid 98.7 1.9E-07 4.2E-12 94.1 13.4 66 257-326 148-213 (393)
134 PRK08641 sdhA succinate dehydr 98.7 3.3E-07 7.1E-12 96.7 15.2 34 60-96 3-36 (589)
135 PRK04176 ribulose-1,5-biphosph 98.7 5.5E-08 1.2E-12 91.3 8.4 120 59-183 24-173 (257)
136 TIGR01350 lipoamide_DH dihydro 98.7 4.7E-08 1E-12 100.8 8.0 98 60-185 170-271 (461)
137 PRK07190 hypothetical protein; 98.7 8.6E-08 1.9E-12 98.8 9.8 123 58-183 3-165 (487)
138 PRK13977 myosin-cross-reactive 98.7 5.5E-07 1.2E-11 92.1 15.1 87 225-315 191-292 (576)
139 PRK07333 2-octaprenyl-6-methox 98.6 1E-07 2.2E-12 96.6 9.3 124 60-184 1-168 (403)
140 TIGR00292 thiazole biosynthesi 98.6 8E-08 1.7E-12 89.9 7.6 119 59-182 20-169 (254)
141 PRK08626 fumarate reductase fl 98.6 1.4E-07 3E-12 100.5 10.3 35 59-96 4-38 (657)
142 PF00070 Pyr_redox: Pyridine n 98.6 8E-08 1.7E-12 73.0 6.1 78 62-167 1-80 (80)
143 PRK06184 hypothetical protein; 98.6 1.5E-07 3.1E-12 98.1 9.9 121 60-183 3-168 (502)
144 PRK06134 putative FAD-binding 98.6 2.9E-07 6.2E-12 97.2 11.8 102 215-317 160-279 (581)
145 PRK08773 2-octaprenyl-3-methyl 98.6 1.2E-07 2.7E-12 95.5 8.2 124 58-184 4-170 (392)
146 TIGR01790 carotene-cycl lycope 98.6 1.9E-07 4.1E-12 94.1 8.8 118 62-183 1-141 (388)
147 PF13454 NAD_binding_9: FAD-NA 98.6 7.3E-07 1.6E-11 77.2 11.3 118 64-181 1-155 (156)
148 KOG2415 Electron transfer flav 98.5 1.9E-06 4.2E-11 82.4 14.3 58 260-317 185-257 (621)
149 PRK08020 ubiF 2-octaprenyl-3-m 98.5 3.3E-07 7.1E-12 92.4 9.7 124 58-184 3-170 (391)
150 PRK07236 hypothetical protein; 98.5 6E-07 1.3E-11 90.3 11.4 123 58-183 4-154 (386)
151 TIGR02734 crtI_fam phytoene de 98.5 8.7E-08 1.9E-12 99.9 5.3 56 258-314 219-274 (502)
152 TIGR00292 thiazole biosynthesi 98.5 6.9E-06 1.5E-10 76.9 17.4 166 216-384 21-250 (254)
153 TIGR03385 CoA_CoA_reduc CoA-di 98.5 4.4E-07 9.5E-12 92.6 10.0 98 60-184 137-234 (427)
154 PRK04176 ribulose-1,5-biphosph 98.5 4.6E-06 1E-10 78.4 16.1 102 216-317 25-174 (257)
155 COG1053 SdhA Succinate dehydro 98.5 1.3E-06 2.7E-11 90.7 13.2 37 57-96 3-39 (562)
156 PRK09126 hypothetical protein; 98.5 7.7E-07 1.7E-11 89.8 11.6 122 60-184 3-168 (392)
157 PRK08244 hypothetical protein; 98.5 4.4E-07 9.5E-12 94.3 9.9 121 60-183 2-159 (493)
158 PLN02697 lycopene epsilon cycl 98.5 3.1E-07 6.8E-12 94.6 8.7 119 59-183 107-248 (529)
159 PRK01747 mnmC bifunctional tRN 98.5 1.4E-06 2.9E-11 93.8 13.8 57 258-317 408-464 (662)
160 PF04820 Trp_halogenase: Trypt 98.5 1.7E-07 3.6E-12 95.7 6.3 58 259-317 155-212 (454)
161 TIGR02731 phytoene_desat phyto 98.5 1.4E-06 3.1E-11 89.5 13.3 57 258-314 213-274 (453)
162 PRK07045 putative monooxygenas 98.5 4E-07 8.6E-12 91.7 8.8 122 58-183 3-165 (388)
163 TIGR01377 soxA_mon sarcosine o 98.5 3.9E-06 8.3E-11 84.3 15.8 65 258-326 145-209 (380)
164 PF03486 HI0933_like: HI0933-l 98.5 9.9E-07 2.1E-11 88.2 10.9 98 218-316 2-166 (409)
165 PLN02612 phytoene desaturase 98.5 3.5E-06 7.7E-11 88.6 15.5 57 258-314 308-364 (567)
166 PRK07608 ubiquinone biosynthes 98.5 4.6E-07 1E-11 91.3 8.6 120 60-183 5-167 (388)
167 PRK07364 2-octaprenyl-6-methox 98.5 4.5E-07 9.8E-12 92.2 8.6 38 58-98 16-53 (415)
168 COG1232 HemY Protoporphyrinoge 98.5 8.3E-07 1.8E-11 88.6 10.1 37 61-98 1-37 (444)
169 PRK04965 NADH:flavorubredoxin 98.5 7.8E-07 1.7E-11 89.1 9.9 99 59-184 140-240 (377)
170 PRK08013 oxidoreductase; Provi 98.5 4E-07 8.7E-12 92.0 7.9 121 60-183 3-168 (400)
171 PRK07494 2-octaprenyl-6-methox 98.5 1.4E-06 3E-11 87.8 11.8 38 57-97 4-41 (388)
172 PRK07233 hypothetical protein; 98.5 6E-07 1.3E-11 91.8 9.2 55 258-314 198-252 (434)
173 PRK12409 D-amino acid dehydrog 98.4 2.4E-06 5.3E-11 86.7 13.5 56 259-316 198-258 (410)
174 PRK09754 phenylpropionate diox 98.4 1.3E-06 2.9E-11 88.0 11.5 99 216-318 3-114 (396)
175 PRK05868 hypothetical protein; 98.4 6.8E-07 1.5E-11 89.3 9.2 121 60-183 1-160 (372)
176 PF13738 Pyr_redox_3: Pyridine 98.4 1.7E-06 3.7E-11 78.5 11.2 97 220-318 1-142 (203)
177 PRK06912 acoL dihydrolipoamide 98.4 6.8E-07 1.5E-11 91.9 9.5 97 60-184 170-269 (458)
178 PRK06183 mhpA 3-(3-hydroxyphen 98.4 8.5E-07 1.9E-11 93.1 10.4 37 58-97 8-44 (538)
179 TIGR01373 soxB sarcosine oxida 98.4 5.5E-06 1.2E-10 84.0 16.0 56 259-315 184-239 (407)
180 PRK00711 D-amino acid dehydrog 98.4 6.8E-06 1.5E-10 83.6 16.6 63 259-324 202-264 (416)
181 COG1233 Phytoene dehydrogenase 98.4 2.8E-07 6E-12 95.1 6.3 57 257-314 223-279 (487)
182 PRK08163 salicylate hydroxylas 98.4 4.6E-07 9.9E-12 91.5 7.8 123 59-184 3-167 (396)
183 PRK05714 2-octaprenyl-3-methyl 98.4 4.8E-07 1E-11 91.7 7.9 121 60-183 2-168 (405)
184 COG3380 Predicted NAD/FAD-depe 98.4 6.1E-07 1.3E-11 81.2 7.5 33 61-96 2-34 (331)
185 PRK08274 tricarballylate dehyd 98.4 8.9E-06 1.9E-10 84.0 17.3 64 258-322 131-199 (466)
186 COG2509 Uncharacterized FAD-de 98.4 6.3E-06 1.4E-10 80.3 14.4 93 235-329 150-246 (486)
187 PRK06126 hypothetical protein; 98.4 1.1E-06 2.3E-11 92.7 10.1 38 57-97 4-41 (545)
188 PRK08849 2-octaprenyl-3-methyl 98.4 8.1E-07 1.7E-11 89.3 8.6 122 60-184 3-168 (384)
189 PRK06416 dihydrolipoamide dehy 98.4 8.3E-07 1.8E-11 91.5 8.9 98 60-185 172-274 (462)
190 PRK05192 tRNA uridine 5-carbox 98.4 5.2E-07 1.1E-11 93.2 7.3 35 59-96 3-37 (618)
191 PRK06175 L-aspartate oxidase; 98.4 1E-06 2.2E-11 89.6 9.4 54 329-384 330-384 (433)
192 COG0654 UbiH 2-polyprenyl-6-me 98.4 7.5E-07 1.6E-11 89.5 8.1 120 60-182 2-161 (387)
193 PTZ00383 malate:quinone oxidor 98.4 4.4E-06 9.5E-11 85.8 13.7 66 259-327 212-283 (497)
194 PRK07588 hypothetical protein; 98.4 1.8E-06 4E-11 87.0 10.8 121 61-184 1-159 (391)
195 PF05834 Lycopene_cycl: Lycope 98.4 9.1E-07 2E-11 88.3 8.5 119 62-183 1-142 (374)
196 PRK05976 dihydrolipoamide dehy 98.4 1.2E-06 2.6E-11 90.4 9.6 98 60-185 180-283 (472)
197 PRK08850 2-octaprenyl-6-methox 98.4 1.1E-06 2.5E-11 88.9 8.9 41 143-183 126-168 (405)
198 PRK14694 putative mercuric red 98.4 1.5E-06 3.2E-11 89.7 9.8 96 60-185 178-275 (468)
199 PRK09564 coenzyme A disulfide 98.4 3E-06 6.4E-11 87.0 12.0 103 217-321 1-120 (444)
200 TIGR00275 flavoprotein, HI0933 98.4 5.9E-07 1.3E-11 90.5 6.7 47 136-183 112-160 (400)
201 PRK13512 coenzyme A disulfide 98.4 1.4E-06 3.1E-11 89.0 9.5 95 60-184 148-242 (438)
202 PRK15317 alkyl hydroperoxide r 98.4 4.4E-06 9.5E-11 87.2 13.2 101 216-318 211-324 (517)
203 TIGR03140 AhpF alkyl hydropero 98.4 5E-06 1.1E-10 86.6 13.6 101 215-317 211-324 (515)
204 TIGR01424 gluta_reduc_2 glutat 98.4 1.4E-06 3E-11 89.3 9.3 98 60-185 166-265 (446)
205 TIGR01984 UbiH 2-polyprenyl-6- 98.4 7.6E-07 1.7E-11 89.5 7.2 119 62-183 1-162 (382)
206 PRK06116 glutathione reductase 98.4 1.5E-06 3.4E-11 89.2 9.5 98 60-185 167-267 (450)
207 PRK06185 hypothetical protein; 98.4 1.2E-06 2.5E-11 88.9 8.5 37 58-97 4-40 (407)
208 PLN02172 flavin-containing mon 98.4 2.6E-05 5.6E-10 79.7 18.2 103 215-319 9-178 (461)
209 PLN00093 geranylgeranyl diphos 98.3 1.9E-06 4.1E-11 87.9 9.6 39 56-97 35-73 (450)
210 TIGR03329 Phn_aa_oxid putative 98.3 1.1E-05 2.3E-10 83.1 15.2 54 258-315 183-236 (460)
211 COG1249 Lpd Pyruvate/2-oxoglut 98.3 1.8E-06 4E-11 87.0 9.2 99 58-184 171-273 (454)
212 TIGR03364 HpnW_proposed FAD de 98.3 1.9E-06 4.1E-11 86.0 9.4 33 61-96 1-33 (365)
213 PF01134 GIDA: Glucose inhibit 98.3 4.7E-06 1E-10 81.8 11.7 95 218-314 1-150 (392)
214 PRK05732 2-octaprenyl-6-methox 98.3 1.1E-06 2.4E-11 88.8 7.7 43 142-184 126-170 (395)
215 PRK11445 putative oxidoreducta 98.3 2.8E-06 6.1E-11 84.2 10.4 120 60-183 1-157 (351)
216 PRK06847 hypothetical protein; 98.3 7.7E-06 1.7E-10 81.9 13.7 101 216-318 4-165 (375)
217 PRK08132 FAD-dependent oxidore 98.3 2.2E-06 4.8E-11 90.2 10.1 37 58-97 21-57 (547)
218 TIGR01988 Ubi-OHases Ubiquinon 98.3 1.6E-06 3.4E-11 87.2 8.6 119 62-183 1-163 (385)
219 PRK05249 soluble pyridine nucl 98.3 1.8E-06 4E-11 88.9 9.2 98 60-185 175-274 (461)
220 PRK11259 solA N-methyltryptoph 98.3 2.2E-06 4.7E-11 85.9 9.5 34 60-96 3-36 (376)
221 PRK07846 mycothione reductase; 98.3 2.1E-06 4.5E-11 87.9 9.4 97 60-185 166-264 (451)
222 PF01134 GIDA: Glucose inhibit 98.3 5.8E-07 1.3E-11 88.0 5.1 39 142-181 109-150 (392)
223 PRK06753 hypothetical protein; 98.3 2.7E-06 5.8E-11 85.2 9.9 116 62-183 2-152 (373)
224 PF07992 Pyr_redox_2: Pyridine 98.3 1.8E-06 3.9E-11 78.3 7.9 105 218-322 1-128 (201)
225 PRK06370 mercuric reductase; V 98.3 2.6E-06 5.5E-11 87.9 9.8 98 60-185 171-273 (463)
226 TIGR01789 lycopene_cycl lycope 98.3 2.8E-06 6.1E-11 84.5 9.8 117 62-183 1-138 (370)
227 PF12831 FAD_oxidored: FAD dep 98.3 5.2E-07 1.1E-11 91.7 4.6 117 62-181 1-148 (428)
228 TIGR02023 BchP-ChlP geranylger 98.3 2.3E-06 5E-11 86.1 9.2 32 61-95 1-32 (388)
229 TIGR01421 gluta_reduc_1 glutat 98.3 2.4E-06 5.2E-11 87.5 9.4 98 60-185 166-267 (450)
230 PRK05945 sdhA succinate dehydr 98.3 2.3E-06 5E-11 90.3 9.1 37 60-97 3-39 (575)
231 PRK07818 dihydrolipoamide dehy 98.3 2.6E-06 5.7E-11 87.8 9.2 98 60-185 172-275 (466)
232 PTZ00318 NADH dehydrogenase-li 98.3 5.9E-06 1.3E-10 84.0 11.6 100 215-319 9-128 (424)
233 TIGR03169 Nterm_to_SelD pyridi 98.3 4.1E-06 8.9E-11 83.5 10.2 97 218-319 1-110 (364)
234 TIGR02053 MerA mercuric reduct 98.3 2.8E-06 6.2E-11 87.5 9.3 98 60-185 166-268 (463)
235 PRK06996 hypothetical protein; 98.3 2.2E-06 4.8E-11 86.5 8.3 41 56-96 7-48 (398)
236 PRK07845 flavoprotein disulfid 98.3 3.4E-06 7.4E-11 86.9 9.5 98 60-185 177-276 (466)
237 PRK06481 fumarate reductase fl 98.3 5.8E-06 1.3E-10 86.0 11.0 36 59-97 60-95 (506)
238 PF01494 FAD_binding_3: FAD bi 98.2 2.5E-07 5.4E-12 91.8 0.7 35 61-98 2-36 (356)
239 PRK05257 malate:quinone oxidor 98.2 2.9E-05 6.2E-10 80.1 15.8 68 258-327 183-256 (494)
240 TIGR02374 nitri_red_nirB nitri 98.2 5.2E-06 1.1E-10 90.7 10.9 99 219-321 1-113 (785)
241 PRK06327 dihydrolipoamide dehy 98.2 3.7E-06 7.9E-11 86.9 9.3 98 60-185 183-286 (475)
242 PTZ00363 rab-GDP dissociation 98.2 2.7E-05 5.8E-10 78.8 15.0 61 257-317 231-291 (443)
243 TIGR01989 COQ6 Ubiquinone bios 98.2 3E-06 6.6E-11 86.6 8.3 41 143-183 134-183 (437)
244 TIGR03219 salicylate_mono sali 98.2 8.1E-06 1.7E-10 83.0 11.4 120 62-183 2-159 (414)
245 TIGR02028 ChlP geranylgeranyl 98.2 5E-06 1.1E-10 83.8 9.7 34 61-97 1-34 (398)
246 COG0446 HcaD Uncharacterized N 98.2 3.4E-06 7.4E-11 85.6 8.6 98 60-184 136-238 (415)
247 PRK06115 dihydrolipoamide dehy 98.2 4.8E-06 1E-10 85.8 9.6 97 60-184 174-277 (466)
248 TIGR01320 mal_quin_oxido malat 98.2 2.2E-05 4.8E-10 80.8 14.3 68 258-327 178-250 (483)
249 PLN02507 glutathione reductase 98.2 4.3E-06 9.3E-11 86.6 9.1 98 60-185 203-302 (499)
250 PRK06475 salicylate hydroxylas 98.2 4.2E-06 9E-11 84.6 8.7 34 61-97 3-36 (400)
251 PRK13339 malate:quinone oxidor 98.2 2.9E-05 6.2E-10 79.6 14.7 68 259-327 185-257 (497)
252 PRK11101 glpA sn-glycerol-3-ph 98.2 3E-06 6.5E-11 88.8 7.8 35 59-96 5-39 (546)
253 PRK06617 2-octaprenyl-6-methox 98.2 2.8E-06 6.1E-11 85.0 7.3 33 61-96 2-34 (374)
254 PLN02487 zeta-carotene desatur 98.2 6E-06 1.3E-10 86.0 9.8 60 256-315 293-359 (569)
255 PRK12770 putative glutamate sy 98.2 5.1E-06 1.1E-10 82.4 9.0 103 214-317 16-132 (352)
256 COG1252 Ndh NADH dehydrogenase 98.2 8.1E-06 1.7E-10 80.5 10.1 99 216-319 3-114 (405)
257 PTZ00052 thioredoxin reductase 98.2 5.4E-06 1.2E-10 85.9 9.3 97 60-185 182-280 (499)
258 TIGR02360 pbenz_hydroxyl 4-hyd 98.2 3E-06 6.6E-11 85.2 7.2 35 60-97 2-36 (390)
259 TIGR03452 mycothione_red mycot 98.2 6.1E-06 1.3E-10 84.6 9.5 97 60-185 169-267 (452)
260 PRK14989 nitrite reductase sub 98.2 9.4E-06 2E-10 88.7 11.4 102 216-321 3-118 (847)
261 PRK08243 4-hydroxybenzoate 3-m 98.2 5.2E-06 1.1E-10 83.7 8.8 35 60-97 2-36 (392)
262 PRK07236 hypothetical protein; 98.2 1.2E-05 2.6E-10 80.9 11.3 100 216-317 6-155 (386)
263 TIGR01423 trypano_reduc trypan 98.2 6E-06 1.3E-10 85.1 9.1 98 60-185 187-290 (486)
264 PRK08010 pyridine nucleotide-d 98.2 7.1E-06 1.5E-10 84.1 9.6 97 60-185 158-256 (441)
265 PLN02661 Putative thiazole syn 98.2 5.2E-06 1.1E-10 80.2 8.0 37 59-98 91-128 (357)
266 PRK13748 putative mercuric red 98.2 6E-06 1.3E-10 87.4 9.3 96 60-185 270-367 (561)
267 PRK09853 putative selenate red 98.2 1E-05 2.2E-10 88.4 11.1 91 215-317 538-636 (1019)
268 TIGR02032 GG-red-SF geranylger 98.2 2.3E-05 5.1E-10 75.5 12.7 97 218-316 2-148 (295)
269 TIGR01812 sdhA_frdA_Gneg succi 98.2 5.6E-06 1.2E-10 87.5 8.8 33 62-97 1-33 (566)
270 PRK12416 protoporphyrinogen ox 98.2 1.9E-05 4E-10 81.6 12.4 51 259-313 227-277 (463)
271 TIGR00562 proto_IX_ox protopor 98.2 2.8E-05 6E-10 80.3 13.6 37 60-99 2-42 (462)
272 PRK09078 sdhA succinate dehydr 98.2 6.8E-06 1.5E-10 87.0 9.2 35 59-96 11-45 (598)
273 COG1635 THI4 Ribulose 1,5-bisp 98.2 3.3E-06 7.1E-11 74.3 5.6 36 60-98 30-65 (262)
274 TIGR01438 TGR thioredoxin and 98.2 7.8E-06 1.7E-10 84.4 9.4 97 60-185 180-281 (484)
275 PRK07057 sdhA succinate dehydr 98.1 8.3E-06 1.8E-10 86.2 9.7 35 59-96 11-45 (591)
276 COG0665 DadA Glycine/D-amino a 98.1 4.2E-05 9.1E-10 76.9 14.5 56 258-316 156-212 (387)
277 PRK14727 putative mercuric red 98.1 8.3E-06 1.8E-10 84.3 9.2 96 60-185 188-285 (479)
278 TIGR01813 flavo_cyto_c flavocy 98.1 1.1E-05 2.4E-10 82.6 9.9 33 62-97 1-34 (439)
279 PRK07573 sdhA succinate dehydr 98.1 1.7E-05 3.6E-10 84.6 11.2 35 59-96 34-68 (640)
280 PF13450 NAD_binding_8: NAD(P) 98.1 3.5E-06 7.6E-11 61.4 4.3 31 65-98 1-31 (68)
281 PF00890 FAD_binding_2: FAD bi 98.1 2.1E-06 4.5E-11 87.4 4.1 33 62-97 1-33 (417)
282 PRK08205 sdhA succinate dehydr 98.1 1.2E-05 2.5E-10 85.1 9.6 34 59-96 4-37 (583)
283 PRK11749 dihydropyrimidine deh 98.1 9.8E-06 2.1E-10 83.3 8.8 90 215-315 139-236 (457)
284 TIGR02732 zeta_caro_desat caro 98.1 1.9E-05 4.1E-10 81.4 10.8 59 257-315 218-283 (474)
285 PRK07121 hypothetical protein; 98.1 4.8E-05 1E-09 79.0 13.8 67 257-323 176-247 (492)
286 PRK12779 putative bifunctional 98.1 1.2E-05 2.6E-10 88.9 9.7 93 215-317 305-406 (944)
287 PRK06834 hypothetical protein; 98.1 5.1E-05 1.1E-09 78.5 13.6 107 217-327 4-165 (488)
288 PTZ00058 glutathione reductase 98.1 1.2E-05 2.7E-10 83.9 9.1 97 60-184 237-337 (561)
289 COG1635 THI4 Ribulose 1,5-bisp 98.1 0.00011 2.5E-09 64.8 13.3 138 216-354 30-229 (262)
290 PRK06292 dihydrolipoamide dehy 98.1 1.3E-05 2.9E-10 82.5 9.2 98 59-185 168-270 (460)
291 PTZ00139 Succinate dehydrogena 98.1 1.3E-05 2.9E-10 85.0 9.3 35 59-96 28-62 (617)
292 PLN02463 lycopene beta cyclase 98.1 4.2E-05 9.2E-10 77.7 12.5 98 217-317 29-170 (447)
293 PRK13369 glycerol-3-phosphate 98.1 1.1E-05 2.3E-10 84.0 8.3 37 57-96 3-39 (502)
294 PLN00128 Succinate dehydrogena 98.1 1.5E-05 3.3E-10 84.6 9.6 35 59-96 49-83 (635)
295 PRK07803 sdhA succinate dehydr 98.1 1.1E-05 2.3E-10 86.0 8.3 36 59-97 7-42 (626)
296 PRK07045 putative monooxygenas 98.1 5.9E-05 1.3E-09 76.0 13.3 101 217-317 6-166 (388)
297 PRK07538 hypothetical protein; 98.1 1.4E-05 3E-10 81.2 8.7 33 62-97 2-34 (413)
298 PRK08773 2-octaprenyl-3-methyl 98.1 5.2E-05 1.1E-09 76.5 12.8 108 216-327 6-178 (392)
299 KOG1336 Monodehydroascorbate/f 98.0 1.2E-05 2.7E-10 78.9 7.8 100 59-185 212-315 (478)
300 KOG2820 FAD-dependent oxidored 98.0 1.7E-05 3.6E-10 74.4 7.6 51 135-185 159-214 (399)
301 PRK08958 sdhA succinate dehydr 98.0 2.4E-05 5.2E-10 82.6 9.9 34 60-96 7-40 (588)
302 PRK06467 dihydrolipoamide dehy 98.0 1.6E-05 3.4E-10 82.0 8.4 97 60-185 174-276 (471)
303 COG0493 GltD NADPH-dependent g 98.0 1.2E-05 2.5E-10 81.4 7.1 89 215-315 122-219 (457)
304 TIGR01316 gltA glutamate synth 98.0 1.8E-05 3.9E-10 81.0 8.6 92 215-317 132-232 (449)
305 TIGR00136 gidA glucose-inhibit 98.0 2.1E-05 4.5E-10 81.5 8.9 33 61-96 1-33 (617)
306 PRK10262 thioredoxin reductase 98.0 9.2E-05 2E-09 72.5 13.2 100 215-318 5-119 (321)
307 PRK08244 hypothetical protein; 98.0 6.9E-05 1.5E-09 78.0 12.8 101 217-317 3-160 (493)
308 COG0492 TrxB Thioredoxin reduc 98.0 0.00038 8.2E-09 66.9 16.5 98 217-318 4-117 (305)
309 PF01946 Thi4: Thi4 family; PD 98.0 5.9E-06 1.3E-10 73.2 3.8 37 59-98 16-52 (230)
310 COG0654 UbiH 2-polyprenyl-6-me 98.0 9.1E-05 2E-09 74.5 13.0 99 216-316 2-162 (387)
311 PRK12831 putative oxidoreducta 98.0 2.3E-05 5E-10 80.5 8.5 93 215-317 139-242 (464)
312 PRK10157 putative oxidoreducta 98.0 0.00012 2.5E-09 74.7 13.5 107 217-327 6-173 (428)
313 PRK08163 salicylate hydroxylas 98.0 9.9E-05 2.2E-09 74.5 12.9 100 216-317 4-167 (396)
314 TIGR01318 gltD_gamma_fam gluta 97.9 2.8E-05 6E-10 80.0 8.8 92 215-317 140-239 (467)
315 PLN02852 ferredoxin-NADP+ redu 97.9 3E-05 6.5E-10 79.2 8.7 92 215-317 25-127 (491)
316 TIGR03143 AhpF_homolog putativ 97.9 9.9E-05 2.1E-09 77.7 12.9 98 217-319 5-117 (555)
317 PRK08294 phenol 2-monooxygenas 97.9 4.7E-05 1E-09 81.2 10.3 37 58-97 30-67 (634)
318 PRK07588 hypothetical protein; 97.9 0.00011 2.3E-09 74.1 12.6 98 218-318 2-160 (391)
319 PRK12843 putative FAD-binding 97.9 5.5E-05 1.2E-09 79.9 10.7 66 257-323 220-290 (578)
320 PLN02546 glutathione reductase 97.9 3.6E-05 7.8E-10 80.5 9.0 99 59-185 251-352 (558)
321 PRK06263 sdhA succinate dehydr 97.9 3.8E-05 8.2E-10 80.7 9.3 33 60-96 7-39 (543)
322 PRK05714 2-octaprenyl-3-methyl 97.9 0.00014 2.9E-09 73.8 12.9 99 217-317 3-169 (405)
323 PTZ00153 lipoamide dehydrogena 97.9 2.9E-05 6.4E-10 82.3 8.3 98 60-185 312-429 (659)
324 PRK06184 hypothetical protein; 97.9 0.00014 3E-09 75.8 13.3 98 217-316 4-168 (502)
325 PRK07333 2-octaprenyl-6-methox 97.9 0.00014 3E-09 73.7 12.6 106 218-327 3-176 (403)
326 PRK07190 hypothetical protein; 97.9 0.00022 4.8E-09 73.7 14.3 107 217-327 6-174 (487)
327 PRK01438 murD UDP-N-acetylmura 97.9 5.1E-05 1.1E-09 78.6 9.5 81 215-321 15-95 (480)
328 PRK05868 hypothetical protein; 97.9 0.00016 3.5E-09 72.2 12.3 99 217-317 2-161 (372)
329 TIGR01317 GOGAT_sm_gam glutama 97.9 4.6E-05 9.9E-10 78.7 8.5 90 215-315 142-239 (485)
330 PRK12778 putative bifunctional 97.9 4.7E-05 1E-09 83.2 9.0 93 215-317 430-531 (752)
331 PRK05192 tRNA uridine 5-carbox 97.8 0.00017 3.7E-09 74.9 12.3 96 217-314 5-155 (618)
332 TIGR01984 UbiH 2-polyprenyl-6- 97.8 0.0002 4.3E-09 72.0 12.7 97 218-316 1-162 (382)
333 PF00743 FMO-like: Flavin-bind 97.8 0.00027 5.9E-09 73.4 13.8 136 216-351 1-191 (531)
334 KOG2665 Predicted FAD-dependen 97.8 9E-05 2E-09 68.8 9.0 66 263-329 201-269 (453)
335 KOG2495 NADH-dehydrogenase (ub 97.8 4.7E-06 1E-10 80.3 0.8 100 61-185 219-331 (491)
336 PRK07364 2-octaprenyl-6-methox 97.8 0.00018 4E-09 73.1 12.3 100 216-317 18-182 (415)
337 PRK09126 hypothetical protein; 97.8 0.0002 4.3E-09 72.2 12.4 99 217-317 4-168 (392)
338 PLN02697 lycopene epsilon cycl 97.8 0.0002 4.4E-09 74.1 12.5 98 217-316 109-248 (529)
339 PRK01438 murD UDP-N-acetylmura 97.8 9.6E-05 2.1E-09 76.6 10.2 78 59-185 15-92 (480)
340 TIGR03315 Se_ygfK putative sel 97.8 7.2E-05 1.6E-09 82.3 9.5 90 216-317 537-634 (1012)
341 KOG0029 Amine oxidase [Seconda 97.8 2.4E-05 5.1E-10 80.2 5.4 40 57-99 12-51 (501)
342 PRK07608 ubiquinone biosynthes 97.8 0.00025 5.4E-09 71.4 12.7 98 217-317 6-168 (388)
343 PRK08255 salicylyl-CoA 5-hydro 97.8 9.5E-06 2.1E-10 88.4 2.5 33 62-97 2-36 (765)
344 TIGR01988 Ubi-OHases Ubiquinon 97.8 0.00026 5.7E-09 71.1 12.8 97 218-316 1-163 (385)
345 PLN02464 glycerol-3-phosphate 97.8 6.3E-05 1.4E-09 80.0 8.5 36 58-96 69-104 (627)
346 PF01494 FAD_binding_3: FAD bi 97.8 0.00018 3.9E-09 71.1 11.3 100 218-317 3-173 (356)
347 PRK08013 oxidoreductase; Provi 97.8 0.00026 5.5E-09 71.6 12.5 99 217-317 4-169 (400)
348 PTZ00188 adrenodoxin reductase 97.8 0.00014 3.1E-09 73.4 10.3 92 215-317 38-139 (506)
349 COG0644 FixC Dehydrogenases (f 97.8 0.00027 5.8E-09 71.3 12.3 108 217-327 4-161 (396)
350 PRK08020 ubiF 2-octaprenyl-3-m 97.8 0.00033 7.1E-09 70.6 12.7 99 217-317 6-170 (391)
351 COG2907 Predicted NAD/FAD-bind 97.8 0.00045 9.8E-09 65.2 12.3 57 256-314 215-271 (447)
352 PRK06183 mhpA 3-(3-hydroxyphen 97.8 0.0003 6.4E-09 74.0 12.8 99 216-316 10-174 (538)
353 PRK12809 putative oxidoreducta 97.8 7.7E-05 1.7E-09 79.8 8.4 92 215-317 309-408 (639)
354 PRK12775 putative trifunctiona 97.7 8.8E-05 1.9E-09 82.8 9.1 93 215-317 429-531 (1006)
355 COG0445 GidA Flavin-dependent 97.7 2.8E-05 6.1E-10 77.6 4.6 34 60-96 4-37 (621)
356 PRK06753 hypothetical protein; 97.7 0.00024 5.3E-09 71.1 11.5 98 218-317 2-153 (373)
357 PRK08849 2-octaprenyl-3-methyl 97.7 0.00033 7.1E-09 70.4 12.4 100 217-318 4-169 (384)
358 TIGR00136 gidA glucose-inhibit 97.7 0.00038 8.2E-09 72.3 12.8 98 218-316 2-154 (617)
359 PRK12810 gltD glutamate syntha 97.7 9.1E-05 2E-09 76.4 8.4 91 215-316 142-240 (471)
360 PRK08132 FAD-dependent oxidore 97.7 0.00037 8E-09 73.5 13.1 102 216-317 23-186 (547)
361 COG0578 GlpA Glycerol-3-phosph 97.7 0.00017 3.8E-09 73.3 10.0 59 257-317 163-226 (532)
362 TIGR01790 carotene-cycl lycope 97.7 0.00035 7.6E-09 70.3 12.3 97 218-316 1-141 (388)
363 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 5.7E-05 1.2E-09 75.4 6.3 105 218-324 2-145 (433)
364 KOG1399 Flavin-containing mono 97.7 0.00078 1.7E-08 68.0 14.5 135 215-350 5-193 (448)
365 TIGR01811 sdhA_Bsu succinate d 97.7 0.00013 2.8E-09 77.3 9.3 31 63-96 1-31 (603)
366 PRK08850 2-octaprenyl-6-methox 97.7 0.00035 7.6E-09 70.8 12.1 98 217-316 5-168 (405)
367 PLN02661 Putative thiazole syn 97.7 0.0011 2.3E-08 64.4 14.4 100 216-316 92-244 (357)
368 PRK07208 hypothetical protein; 97.7 5.3E-05 1.2E-09 78.5 5.6 57 258-314 218-278 (479)
369 PRK10015 oxidoreductase; Provi 97.7 0.00058 1.3E-08 69.5 12.9 98 217-316 6-164 (429)
370 COG2072 TrkA Predicted flavopr 97.7 0.0018 3.9E-08 66.0 16.4 136 216-353 8-185 (443)
371 PRK06617 2-octaprenyl-6-methox 97.6 0.00055 1.2E-08 68.5 12.2 98 218-318 3-162 (374)
372 PRK12769 putative oxidoreducta 97.6 0.00015 3.3E-09 78.0 8.4 91 215-316 326-424 (654)
373 PRK06185 hypothetical protein; 97.6 0.00066 1.4E-08 68.8 12.8 109 216-327 6-178 (407)
374 PRK12814 putative NADPH-depend 97.6 0.00015 3.3E-09 77.6 8.4 92 215-317 192-291 (652)
375 PF12831 FAD_oxidored: FAD dep 97.6 4.6E-05 1E-09 77.5 4.2 107 218-328 1-159 (428)
376 PF01946 Thi4: Thi4 family; PD 97.6 0.00078 1.7E-08 60.0 11.2 103 216-318 17-167 (230)
377 PRK06475 salicylate hydroxylas 97.6 0.00078 1.7E-08 68.1 13.0 99 217-317 3-168 (400)
378 TIGR01789 lycopene_cycl lycope 97.6 0.00031 6.7E-09 70.0 9.8 94 218-317 1-139 (370)
379 PRK11883 protoporphyrinogen ox 97.6 6.8E-05 1.5E-09 77.1 5.1 38 61-99 1-38 (451)
380 TIGR01372 soxA sarcosine oxida 97.6 0.0007 1.5E-08 76.1 13.5 101 216-318 163-288 (985)
381 PLN02529 lysine-specific histo 97.6 9.8E-05 2.1E-09 78.9 6.2 40 57-99 157-196 (738)
382 PRK05732 2-octaprenyl-6-methox 97.6 0.00076 1.6E-08 68.1 12.5 107 217-327 4-178 (395)
383 PRK07494 2-octaprenyl-6-methox 97.6 0.00071 1.5E-08 68.1 12.0 98 217-317 8-168 (388)
384 PRK09897 hypothetical protein; 97.6 0.0013 2.7E-08 68.3 13.7 99 217-317 2-167 (534)
385 TIGR03219 salicylate_mono sali 97.5 0.00052 1.1E-08 69.7 10.6 97 218-316 2-159 (414)
386 PTZ00306 NADH-dependent fumara 97.5 0.00035 7.5E-09 79.7 10.1 36 59-97 408-443 (1167)
387 TIGR02485 CobZ_N-term precorri 97.5 0.00021 4.5E-09 73.0 7.6 30 65-97 1-30 (432)
388 PRK05335 tRNA (uracil-5-)-meth 97.5 0.0001 2.3E-09 73.1 5.0 35 60-97 2-36 (436)
389 PRK06481 fumarate reductase fl 97.5 0.0011 2.5E-08 68.9 12.9 108 216-324 61-260 (506)
390 TIGR00275 flavoprotein, HI0933 97.5 0.00073 1.6E-08 68.1 11.0 94 220-316 1-160 (400)
391 PRK06126 hypothetical protein; 97.5 0.0012 2.7E-08 69.6 12.8 101 216-316 7-188 (545)
392 TIGR01813 flavo_cyto_c flavocy 97.5 0.0012 2.6E-08 67.6 12.4 63 261-323 133-200 (439)
393 COG3349 Uncharacterized conser 97.5 0.00013 2.7E-09 73.1 4.8 36 61-99 1-36 (485)
394 PRK08243 4-hydroxybenzoate 3-m 97.5 0.0017 3.7E-08 65.5 13.0 100 217-317 3-164 (392)
395 PLN02268 probable polyamine ox 97.5 0.00014 3E-09 74.5 5.1 36 61-99 1-36 (435)
396 PLN02576 protoporphyrinogen ox 97.5 0.00016 3.5E-09 75.3 5.7 40 57-99 9-49 (496)
397 PLN02985 squalene monooxygenas 97.4 0.00017 3.6E-09 75.0 5.6 38 57-97 40-77 (514)
398 PRK13984 putative oxidoreducta 97.4 0.00037 8E-09 74.4 8.4 92 214-316 281-380 (604)
399 TIGR01989 COQ6 Ubiquinone bios 97.4 0.0018 3.9E-08 66.2 13.0 100 218-317 2-184 (437)
400 PLN02568 polyamine oxidase 97.4 0.00018 3.9E-09 75.0 5.6 43 57-99 2-46 (539)
401 PF13454 NAD_binding_9: FAD-NA 97.4 0.0021 4.5E-08 55.6 11.2 41 272-314 114-155 (156)
402 PRK12771 putative glutamate sy 97.4 0.00046 1E-08 72.9 8.4 92 214-317 135-235 (564)
403 PRK06996 hypothetical protein; 97.4 0.0014 3E-08 66.2 11.3 99 215-315 10-173 (398)
404 KOG4254 Phytoene desaturase [C 97.4 0.00052 1.1E-08 67.0 7.6 55 258-313 264-318 (561)
405 PF05834 Lycopene_cycl: Lycope 97.4 0.0017 3.7E-08 64.9 11.7 97 218-317 1-143 (374)
406 KOG0685 Flavin-containing amin 97.4 0.00025 5.4E-09 69.8 5.2 40 58-99 19-58 (498)
407 TIGR00031 UDP-GALP_mutase UDP- 97.4 0.00024 5.3E-09 70.2 5.2 35 61-98 2-36 (377)
408 PRK12266 glpD glycerol-3-phosp 97.3 0.00024 5.2E-09 73.9 5.3 37 58-97 4-40 (508)
409 PLN02927 antheraxanthin epoxid 97.3 0.00022 4.7E-09 75.4 5.0 36 58-96 79-114 (668)
410 TIGR02733 desat_CrtD C-3',4' d 97.3 0.00024 5.3E-09 73.9 5.2 57 257-314 231-292 (492)
411 PRK11259 solA N-methyltryptoph 97.3 0.0028 6E-08 63.5 12.7 47 268-317 159-205 (376)
412 KOG2404 Fumarate reductase, fl 97.3 0.00032 7E-09 65.4 5.2 33 61-96 10-42 (477)
413 PRK07538 hypothetical protein; 97.3 0.0024 5.2E-08 64.9 12.0 99 218-316 2-165 (413)
414 PTZ00367 squalene epoxidase; P 97.3 0.00028 6E-09 73.9 5.0 35 59-96 32-66 (567)
415 PRK11101 glpA sn-glycerol-3-ph 97.3 0.003 6.5E-08 66.4 12.4 32 217-248 7-38 (546)
416 COG0445 GidA Flavin-dependent 97.3 0.00087 1.9E-08 67.3 7.8 97 217-314 5-156 (621)
417 TIGR02360 pbenz_hydroxyl 4-hyd 97.3 0.0032 6.8E-08 63.4 12.2 100 217-317 3-164 (390)
418 KOG0399 Glutamate synthase [Am 97.3 0.00077 1.7E-08 72.4 7.7 92 215-317 1784-1883(2142)
419 KOG1335 Dihydrolipoamide dehyd 97.3 0.0004 8.7E-09 66.3 5.1 98 59-184 210-315 (506)
420 TIGR02023 BchP-ChlP geranylger 97.2 0.0034 7.3E-08 63.2 12.3 96 218-316 2-155 (388)
421 PRK11445 putative oxidoreducta 97.2 0.0051 1.1E-07 61.0 13.1 96 218-317 3-158 (351)
422 PRK06567 putative bifunctional 97.2 0.00075 1.6E-08 73.4 7.5 35 214-248 381-415 (1028)
423 KOG0404 Thioredoxin reductase 97.2 0.0025 5.4E-08 56.5 9.3 99 216-318 8-126 (322)
424 PF00890 FAD_binding_2: FAD bi 97.2 0.0034 7.5E-08 63.8 11.9 59 258-317 141-204 (417)
425 TIGR02028 ChlP geranylgeranyl 97.2 0.005 1.1E-07 62.1 12.9 98 218-316 2-160 (398)
426 PLN02785 Protein HOTHEAD 97.2 0.0069 1.5E-07 63.9 14.1 36 58-97 53-88 (587)
427 PF06039 Mqo: Malate:quinone o 97.2 0.00075 1.6E-08 66.8 6.2 85 259-344 182-274 (488)
428 TIGR03364 HpnW_proposed FAD de 97.2 0.0042 9E-08 62.0 11.9 31 218-248 2-32 (365)
429 PLN02464 glycerol-3-phosphate 97.1 0.0055 1.2E-07 65.4 13.1 32 217-248 72-103 (627)
430 TIGR02730 carot_isom carotene 97.1 0.00053 1.1E-08 71.3 5.2 56 258-314 229-284 (493)
431 KOG2820 FAD-dependent oxidored 97.1 0.0062 1.3E-07 57.6 11.3 58 260-317 155-213 (399)
432 PRK08401 L-aspartate oxidase; 97.1 0.0056 1.2E-07 63.1 12.4 97 217-316 2-175 (466)
433 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00058 1.3E-08 68.3 4.7 34 61-97 1-34 (433)
434 PRK07804 L-aspartate oxidase; 97.1 0.0059 1.3E-07 64.2 12.4 98 217-314 17-208 (541)
435 KOG1276 Protoporphyrinogen oxi 97.1 0.00068 1.5E-08 65.8 4.8 41 58-99 9-49 (491)
436 PLN02328 lysine-specific histo 97.1 0.0008 1.7E-08 72.5 5.6 40 57-99 235-274 (808)
437 PLN02676 polyamine oxidase 97.0 0.00091 2E-08 69.2 5.7 39 58-98 24-62 (487)
438 PRK12834 putative FAD-binding 97.0 0.00079 1.7E-08 70.9 5.0 35 59-96 3-37 (549)
439 PLN00093 geranylgeranyl diphos 97.0 0.0096 2.1E-07 60.9 12.6 99 216-316 39-199 (450)
440 PRK12837 3-ketosteroid-delta-1 97.0 0.00082 1.8E-08 70.1 4.9 36 59-98 6-41 (513)
441 COG1251 NirB NAD(P)H-nitrite r 97.0 0.0046 1E-07 64.4 10.0 103 216-322 3-119 (793)
442 KOG2614 Kynurenine 3-monooxyge 97.0 0.00098 2.1E-08 64.7 4.8 35 60-97 2-36 (420)
443 TIGR02485 CobZ_N-term precorri 96.9 0.0079 1.7E-07 61.5 11.7 64 260-323 125-191 (432)
444 TIGR01812 sdhA_frdA_Gneg succi 96.9 0.01 2.2E-07 63.0 12.7 51 264-315 135-190 (566)
445 KOG2311 NAD/FAD-utilizing prot 96.9 0.00086 1.9E-08 65.9 3.8 36 58-96 26-61 (679)
446 COG1231 Monoamine oxidase [Ami 96.9 0.0014 2.9E-08 64.7 5.0 39 58-99 5-43 (450)
447 PRK12835 3-ketosteroid-delta-1 96.8 0.0013 2.8E-08 69.6 5.0 67 257-323 212-283 (584)
448 COG1148 HdrA Heterodisulfide r 96.8 0.0031 6.8E-08 62.3 7.1 71 216-286 124-206 (622)
449 KOG2844 Dimethylglycine dehydr 96.8 0.0087 1.9E-07 61.5 10.3 71 240-316 172-243 (856)
450 PLN02985 squalene monooxygenas 96.8 0.015 3.3E-07 60.5 12.5 33 216-248 43-75 (514)
451 COG3573 Predicted oxidoreducta 96.8 0.0049 1.1E-07 58.0 7.7 35 59-96 4-38 (552)
452 PRK09078 sdhA succinate dehydr 96.8 0.016 3.5E-07 61.6 12.8 54 263-316 154-212 (598)
453 PF00732 GMC_oxred_N: GMC oxid 96.8 0.0011 2.3E-08 64.1 3.6 67 260-326 195-268 (296)
454 COG3380 Predicted NAD/FAD-depe 96.8 0.0047 1E-07 56.6 7.3 100 218-321 3-165 (331)
455 PRK08275 putative oxidoreducta 96.8 0.019 4.1E-07 60.6 13.1 55 262-316 141-200 (554)
456 TIGR01811 sdhA_Bsu succinate d 96.8 0.015 3.3E-07 61.8 12.3 44 272-315 147-195 (603)
457 PF14721 AIF_C: Apoptosis-indu 96.7 0.0058 1.3E-07 48.8 6.7 33 431-464 99-131 (133)
458 PTZ00139 Succinate dehydrogena 96.7 0.02 4.3E-07 61.1 13.0 54 262-315 170-228 (617)
459 PRK12844 3-ketosteroid-delta-1 96.7 0.0018 3.9E-08 68.2 5.1 66 257-323 207-277 (557)
460 KOG2311 NAD/FAD-utilizing prot 96.7 0.0064 1.4E-07 60.0 8.3 32 217-248 29-60 (679)
461 PRK13369 glycerol-3-phosphate 96.7 0.015 3.3E-07 60.6 11.6 32 217-248 7-38 (502)
462 PLN02927 antheraxanthin epoxid 96.7 0.017 3.6E-07 61.4 11.8 36 214-249 79-114 (668)
463 PRK06175 L-aspartate oxidase; 96.7 0.02 4.3E-07 58.5 12.0 54 261-315 131-188 (433)
464 PRK12839 hypothetical protein; 96.7 0.0023 5E-08 67.5 5.3 67 257-323 213-284 (572)
465 PRK07573 sdhA succinate dehydr 96.7 0.02 4.3E-07 61.4 12.4 49 266-315 178-231 (640)
466 PRK06452 sdhA succinate dehydr 96.6 0.018 3.9E-07 60.8 11.9 51 263-314 141-196 (566)
467 COG3634 AhpF Alkyl hydroperoxi 96.6 0.0057 1.2E-07 57.9 6.8 100 216-315 211-324 (520)
468 PRK08294 phenol 2-monooxygenas 96.6 0.031 6.6E-07 59.9 13.4 101 216-316 32-210 (634)
469 PRK08958 sdhA succinate dehydr 96.6 0.027 5.9E-07 59.7 12.9 52 264-315 149-205 (588)
470 COG0562 Glf UDP-galactopyranos 96.6 0.0029 6.4E-08 59.3 4.9 37 60-99 1-37 (374)
471 TIGR00551 nadB L-aspartate oxi 96.6 0.018 3.9E-07 59.8 11.3 57 260-317 130-190 (488)
472 PRK02106 choline dehydrogenase 96.6 0.0026 5.7E-08 67.2 5.2 65 263-328 206-274 (560)
473 PRK06854 adenylylsulfate reduc 96.6 0.029 6.3E-07 59.8 12.9 32 217-248 12-45 (608)
474 PRK14106 murD UDP-N-acetylmura 96.6 0.0098 2.1E-07 61.2 9.0 35 59-96 4-38 (450)
475 PRK06263 sdhA succinate dehydr 96.5 0.03 6.6E-07 58.9 12.4 53 263-315 139-196 (543)
476 PF06100 Strep_67kDa_ant: Stre 96.5 0.0098 2.1E-07 59.7 8.1 37 60-96 2-39 (500)
477 KOG1346 Programmed cell death 96.5 0.0043 9.2E-08 60.1 5.3 104 58-185 345-451 (659)
478 PRK02705 murD UDP-N-acetylmura 96.5 0.013 2.9E-07 60.3 9.5 136 62-244 2-140 (459)
479 PLN00128 Succinate dehydrogena 96.5 0.035 7.7E-07 59.3 12.8 53 263-315 192-249 (635)
480 PRK05945 sdhA succinate dehydr 96.5 0.033 7.2E-07 59.0 12.5 54 262-316 139-197 (575)
481 PRK12845 3-ketosteroid-delta-1 96.4 0.0039 8.5E-08 65.6 5.4 66 257-323 216-286 (564)
482 PF13450 NAD_binding_8: NAD(P) 96.4 0.0053 1.1E-07 44.6 4.5 33 221-253 1-33 (68)
483 PLN03000 amine oxidase 96.4 0.0042 9.2E-08 67.2 5.6 39 58-99 182-220 (881)
484 PRK12266 glpD glycerol-3-phosp 96.4 0.033 7.1E-07 58.1 12.1 32 217-248 7-38 (508)
485 PRK07057 sdhA succinate dehydr 96.4 0.046 9.9E-07 58.1 13.3 32 217-248 13-44 (591)
486 COG4529 Uncharacterized protei 96.4 0.04 8.7E-07 55.1 11.5 32 217-248 2-36 (474)
487 PRK14106 murD UDP-N-acetylmura 96.3 0.015 3.2E-07 59.9 8.8 82 215-321 4-85 (450)
488 TIGR02462 pyranose_ox pyranose 96.3 0.0045 9.8E-08 64.2 4.6 62 266-327 222-290 (544)
489 PRK08205 sdhA succinate dehydr 96.3 0.064 1.4E-06 57.0 13.3 56 261-316 143-206 (583)
490 PRK07803 sdhA succinate dehydr 96.3 0.048 1E-06 58.4 12.4 32 217-248 9-40 (626)
491 PRK12835 3-ketosteroid-delta-1 96.2 0.047 1E-06 57.9 12.1 34 217-250 12-45 (584)
492 PRK06069 sdhA succinate dehydr 96.2 0.053 1.2E-06 57.6 12.4 31 218-248 7-40 (577)
493 PRK08641 sdhA succinate dehydr 96.2 0.055 1.2E-06 57.5 12.2 32 217-248 4-35 (589)
494 KOG2614 Kynurenine 3-monooxyge 96.1 0.022 4.8E-07 55.6 8.2 34 217-250 3-36 (420)
495 PLN02976 amine oxidase 96.1 0.0073 1.6E-07 68.1 5.4 38 58-98 691-728 (1713)
496 PRK08255 salicylyl-CoA 5-hydro 96.1 0.015 3.3E-07 63.7 7.8 33 218-250 2-36 (765)
497 KOG1298 Squalene monooxygenase 96.0 0.0084 1.8E-07 57.7 4.7 39 57-98 42-80 (509)
498 PF02852 Pyr_redox_dim: Pyridi 96.0 0.014 3.1E-07 47.0 5.4 57 432-488 49-110 (110)
499 PRK08071 L-aspartate oxidase; 96.0 0.05 1.1E-06 56.8 10.6 31 217-248 4-34 (510)
500 PRK07395 L-aspartate oxidase; 96.0 0.04 8.7E-07 58.0 10.0 31 217-248 10-40 (553)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.4e-58 Score=464.47 Aligned_cols=390 Identities=27% Similarity=0.428 Sum_probs=336.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
+++|||||||+||++||..|+++++ +.+|+|++++++.+|.+|++++.++......... ....+++
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~-------------~~~~~~~ 68 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQ-------------VLPANWW 68 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccc-------------cCCHHHH
Confidence 4689999999999999999999987 7899999999999999999987666433221111 2346778
Q ss_pred HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 219 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 219 (497)
.+.+++++.++.|..++.+.+.+.+++|+.+.||+||||||+.|+.+| .++...++++++++..++..+.+.+..++++
T Consensus 69 ~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~v 147 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERSV 147 (396)
T ss_pred HHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCeE
Confidence 889999999989999999999999999999999999999999987544 3444467889998899998888877789999
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917 220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 299 (497)
Q Consensus 220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~ 299 (497)
+|||+|++|+|+|..|+++|.+||++++.+.++++.+++...+.+.+.++++||++++++++++++. ++. ..+.+.+
T Consensus 148 vViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~ 224 (396)
T PRK09754 148 VIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQS 224 (396)
T ss_pred EEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECC
Confidence 9999999999999999999999999999999988777888999999999999999999999999974 232 3577889
Q ss_pred CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917 300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 379 (497)
Q Consensus 300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~ 379 (497)
|+++++|.||+++|.+||+.+++++++..+ ++|.||++++|+.|||||+|||+..+.. .|...+.++|..|..||+.+
T Consensus 225 g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~a 302 (396)
T PRK09754 225 GETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIA 302 (396)
T ss_pred CCEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHH
Confidence 999999999999999999988888888775 6799999999999999999999987766 67777788999999999999
Q ss_pred HHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeecCCC-cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhh
Q 010917 380 IKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQ 457 (497)
Q Consensus 380 a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 457 (497)
|+||++. ..+|..+||||+++|+.. ++++|.... +...+++.+ .++..+|+++|+|+|+++ .|+++++.
T Consensus 303 a~ni~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~ 373 (396)
T PRK09754 303 AAAMLGL-PLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREIR 373 (396)
T ss_pred HHHhcCC-CCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHHH
Confidence 9999964 567899999999999875 899997544 345566644 457778889999999996 88999999
Q ss_pred HHHHHHhCCCCCChhhhcCCC
Q 010917 458 LLPTLARSQPFVDKAKLQQAS 478 (497)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~ 478 (497)
.++++++.+..++++.+.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~ 394 (396)
T PRK09754 374 PIRKWIQSGKTFDAKLLIDEN 394 (396)
T ss_pred HHHHHHHCCCCCCHHHhcCcc
Confidence 999999999999988887763
No 2
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=5.9e-55 Score=417.11 Aligned_cols=402 Identities=45% Similarity=0.759 Sum_probs=362.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.+.++|||||++|..|+.++++.|+ ..+++++.++.++||.++.|++-.+... .+...+..+||
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~~---------------~~~a~r~~e~Y 137 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTVG---------------EGLAKRTPEFY 137 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeecc---------------ccccccChhhH
Confidence 5799999999999999999999997 7899999999999999998887443322 22235667899
Q ss_pred HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 219 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 219 (497)
++.+|++++++.|+.+|.+.+++.+.+|+.+.|++|+||||+.+.. +++||.+.+++.+++++.+++.+........+|
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v 216 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKV 216 (478)
T ss_pred hhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence 9999999999999999999999999999999999999999998875 567898899999999999999998888889999
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917 220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 299 (497)
Q Consensus 220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~ 299 (497)
+++|+|++|+|+|..|...+.+||+|++.+.++++.+.+.+.+.+++++++.||+++.++.+.+++.+.+|.+..|.+.+
T Consensus 217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d 296 (478)
T KOG1336|consen 217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD 296 (478)
T ss_pred EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred CcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917 300 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 378 (497)
Q Consensus 300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 378 (497)
|+++++|.||+.+|.+|++.+++. +..++ .|+|.||+.+||+.|||||+||++.+|.+.++...+++|++.|+.+|+.
T Consensus 297 g~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~ 375 (478)
T KOG1336|consen 297 GKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ 375 (478)
T ss_pred CCEeccCeEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence 999999999999999999999987 55544 7899999999999999999999999999988888889999999999998
Q ss_pred HHHHHhcCCCCCCCCCCceeeeccccCCCCcceeeEEeecCCCcEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhh
Q 010917 379 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQ 457 (497)
Q Consensus 379 ~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 457 (497)
+...+.......|+++||||+..|+.. |+++|...++.+..|+.+ .+|..+|++ +..+++.+-.+..+...
T Consensus 376 av~ai~~~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~ 447 (478)
T KOG1336|consen 376 AVKAIKMAPQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVS 447 (478)
T ss_pred hhhhhhccCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHH
Confidence 877776544444789999999999864 899999888888889887 568999999 88888887788888899
Q ss_pred HHHHHHhCCCCCChhhhcCCCcHHHHHHHH
Q 010917 458 LLPTLARSQPFVDKAKLQQASSVEEALEIA 487 (497)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (497)
.+..++++++.+..-++.+.++.+.++.+.
T Consensus 448 ~~a~l~~~~~~v~~~~~~~~~~~~~~~~~~ 477 (478)
T KOG1336|consen 448 QFAKLARQGPEVTSLKLLSKSGDSFWLTIL 477 (478)
T ss_pred HHHHHHhcCCcchhhhhccccchhhHHhhc
Confidence 999999999999988888899998887653
No 3
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2e-48 Score=418.40 Aligned_cols=377 Identities=21% Similarity=0.357 Sum_probs=311.3
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHc
Q 010917 63 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 142 (497)
Q Consensus 63 VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (497)
|||||||+||++||.+|++.+....+||||+++++.+|.++.++. ++... ....++ .....+|+++.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~ 67 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKH 67 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHC
Confidence 699999999999999999876435699999999999999988876 33321 112222 23467889999
Q ss_pred CcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEE
Q 010917 143 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 222 (497)
Q Consensus 143 ~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv 222 (497)
+++++++++|+.+|++.++|++.+|.++.||+||||||+.|+ .|+++|.+.++++.++++.+++.+.+....+++++||
T Consensus 68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV 146 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI 146 (785)
T ss_pred CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence 999999999999999999999999999999999999999987 4667888888999999999999988887888999999
Q ss_pred cCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE
Q 010917 223 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST 302 (497)
Q Consensus 223 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~ 302 (497)
|+|++|+|+|..|+++|.+|+++++.+.++++.+++.....+.+.++++||++++++.++++.. ++.+..+.+++|++
T Consensus 147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~ 224 (785)
T TIGR02374 147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSS 224 (785)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCE
Confidence 9999999999999999999999999999998888999999999999999999999999999973 44566788999999
Q ss_pred EEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 010917 303 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 382 (497)
Q Consensus 303 i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~ 382 (497)
+++|.||+++|.+|+.+++++++++.+ ++|.||++++|+.|+|||+|||+..+...++ .+..|..||+.+|.|
T Consensus 225 i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~n 297 (785)
T TIGR02374 225 LEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADH 297 (785)
T ss_pred EEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHH
Confidence 999999999999999999999999886 7899999999999999999999987665433 567789999999999
Q ss_pred HhcCCCCCCCCCCceee-eccccCCCCcceeeEEeecCCC-----cEEEEccCCCcEEEEEEECCEEEEEEeecCChHHh
Q 010917 383 LLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG-----ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEF 456 (497)
Q Consensus 383 i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 456 (497)
|++....+|...+.... +.+++. +..+|.... .+.........|.++++++++|+|+++ +++....
T Consensus 298 i~g~~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~ 369 (785)
T TIGR02374 298 ICGVECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDY 369 (785)
T ss_pred hcCCCCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHH
Confidence 99754355665554322 233322 344554321 122222223558899999999999996 7888899
Q ss_pred hHHHHHHhCCCCCC
Q 010917 457 QLLPTLARSQPFVD 470 (497)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (497)
..+.++++++..++
T Consensus 370 ~~L~~li~~~~~l~ 383 (785)
T TIGR02374 370 GRLLDMVLKQADIS 383 (785)
T ss_pred HHHHHHHHcCCCCC
Confidence 99999998876554
No 4
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=3.8e-48 Score=415.25 Aligned_cols=381 Identities=19% Similarity=0.323 Sum_probs=307.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
+++|||||||+||+.+|..|++++. +..+||||+++++++|.++.++.. +.. ....++ .....+|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~-~~~--~~~~~l-----------~~~~~~~ 68 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSY-FSH--HTAEEL-----------SLVREGF 68 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHh-HcC--CCHHHc-----------cCCCHHH
Confidence 4589999999999999999988642 245899999999999999888753 221 111122 2345788
Q ss_pred HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCe
Q 010917 139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 218 (497)
Q Consensus 139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 218 (497)
+++.|++++.+++|+.+|++.+.|.+.+|+.+.||+||||||+.|. .|+++|.+.++++.++++.+...+......+++
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~ 147 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKR 147 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence 9999999999999999999999999999989999999999999987 466788778889999999999998887778899
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC
Q 010917 219 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 298 (497)
Q Consensus 219 vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~ 298 (497)
++|||+|++|+|+|..|+++|.+|+++++.+.+++..++++....+++.|+++||+++++..++++..++++....+.+.
T Consensus 148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~ 227 (847)
T PRK14989 148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA 227 (847)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC
Confidence 99999999999999999999999999999999998779999999999999999999999999999975434455678889
Q ss_pred CCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHH
Q 010917 299 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 377 (497)
Q Consensus 299 ~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~ 377 (497)
+|+++++|.||+|+|.+||+++++++|++.+ +|+|.||++++|+.|+|||+|||+.+....++ .+..|..||+
T Consensus 228 dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~ 301 (847)
T PRK14989 228 DGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQ 301 (847)
T ss_pred CCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHH
Confidence 9999999999999999999999999999875 57899999999999999999999987655433 5667999999
Q ss_pred HHHHHHhcCCCCCCCCCCce-eeeccccCCCCcceeeEEeecCCCc------EEEEccCCCcEEEEEEEC--CEEEEEEe
Q 010917 378 HCIKALLSAQTHTYDYLPYF-YSRVFEYEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWIDS--GKLKGVLV 448 (497)
Q Consensus 378 ~~a~~i~~~~~~~~~~~p~~-~~~~~~~~g~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~--~~~~g~~~ 448 (497)
.+|.||++.. ..|...... -.+.+++. +..+|...+. ..........|.++.+++ ++|+|+++
T Consensus 302 vaa~~i~g~~-~~~~g~~~~~~lk~~G~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l 373 (847)
T PRK14989 302 VAVDHLLGSE-NAFEGADLSAKLKLLGVD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL 373 (847)
T ss_pred HHHHHhcCCC-cCCCCcccceEEEECCcc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE
Confidence 9999999753 344432221 11223221 3344532221 223333345688887754 69999997
Q ss_pred ecCChHHhhHHHHHHhCCCCCC
Q 010917 449 ESGSPEEFQLLPTLARSQPFVD 470 (497)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~ 470 (497)
+++..+...+.+++.++..+.
T Consensus 374 -vGd~~~~~~l~~~~~~~~~l~ 394 (847)
T PRK14989 374 -VGDTSDYGNLLQLVLNAIELP 394 (847)
T ss_pred -ECCHHHHHHHHHHHHcCCCCc
Confidence 778888888888887776554
No 5
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-47 Score=383.70 Aligned_cols=362 Identities=23% Similarity=0.357 Sum_probs=287.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
+++|||||||+||+++|..|++.+. +.+||||++++..+|.+|.++..+. . ...+.++. .....+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~-~-~~~~~~~~----------~~~~~~~~ 68 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFS-Q-GQRADDLT----------RQSAGEFA 68 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHh-C-CCCHHHhh----------cCCHHHHH
Confidence 3699999999999999999999875 7899999999999999988765332 1 22222210 11245677
Q ss_pred HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 219 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 219 (497)
+++|++++.+++|+.++++.+.+.+ ++..+.||+||||||+.|. .|.++|... ++.++++.++..+...+..++++
T Consensus 69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~v 144 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRV 144 (377)
T ss_pred HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeE
Confidence 8899999999999999999888886 4567999999999999987 455666433 77888888888877777788999
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917 220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 299 (497)
Q Consensus 220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~ 299 (497)
+|||+|++|+|+|..|.+.|.+|+++++.+.++++.+++.+...+.+.+++.||++++++.+++++..+ +. ..+.+.+
T Consensus 145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~ 222 (377)
T PRK04965 145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-SG-IRATLDS 222 (377)
T ss_pred EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC-CE-EEEEEcC
Confidence 999999999999999999999999999999988877788999999999999999999999999998542 22 3577889
Q ss_pred CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917 300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 379 (497)
Q Consensus 300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~ 379 (497)
|+++++|.||+|+|.+|+..+++++++..++ ++.||++++|+.|||||+|||+..+... ...+..|..||+.+
T Consensus 223 g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~ 295 (377)
T PRK04965 223 GRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMAL 295 (377)
T ss_pred CcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHH
Confidence 9999999999999999999999999998874 5999999999999999999999875432 23567789999999
Q ss_pred HHHHhcCCCCCCCCCCceee-eccccCCCCcceeeEEeecCCC---cEEEEccCCCcEEEEEEECCEEEEEEeecCChHH
Q 010917 380 IKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE 455 (497)
Q Consensus 380 a~~i~~~~~~~~~~~p~~~~-~~~~~~g~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 455 (497)
|.||++.. ..|...+..++ +.++++ +.++|...+ .+....+....+.++++++|+++|++++++....
T Consensus 296 a~n~~g~~-~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 296 AKNLLGQN-TPLKLPAMLVKVKTPELP-------LQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMKE 367 (377)
T ss_pred HHHhcCCC-cccccCCccEEEecCcee-------eEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHHH
Confidence 99999743 45665444322 344432 667776543 2222222235578888899999999985444443
No 6
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=3e-47 Score=379.98 Aligned_cols=380 Identities=23% Similarity=0.382 Sum_probs=324.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
+.++||||.|+||..+..++.+......+||++..+++..|+|..++. ++.+. ....++ .....+||
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~~-~~~edi-----------~l~~~dwy 69 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGE-KTAEDI-----------SLNRNDWY 69 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCCC-ccHHHH-----------hccchhhH
Confidence 468999999999999999999965445689999999999999999886 34332 222222 23467899
Q ss_pred HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeE
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 219 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 219 (497)
++++|+++.+.+|+.||++++.|+++.|.++.||+||+||||.|+.+| +||.+.++++.++++.|...+.......++.
T Consensus 70 ~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~a 148 (793)
T COG1251 70 EENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKKA 148 (793)
T ss_pred HHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999999999999998544 8999999999999999999998886667788
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917 220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 299 (497)
Q Consensus 220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~ 299 (497)
+|||||..|+|+|..|...|.++++++..+.++.+++++.....+++.++++|++++++...+++.. ++++..+.++|
T Consensus 149 vVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D 226 (793)
T COG1251 149 VVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFAD 226 (793)
T ss_pred EEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecC
Confidence 9999999999999999999999999999999999999999999999999999999999998888873 67788999999
Q ss_pred CcEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917 300 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 379 (497)
Q Consensus 300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~ 379 (497)
|+.+++|.||+|+|++||.++..+.|+..++ +|.||+++||++|+|||+|+|+.+....+| .+.-+.+|++.+
T Consensus 227 G~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yG------LVaP~yeq~~v~ 299 (793)
T COG1251 227 GTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYG------LVAPLYEQAKVL 299 (793)
T ss_pred CCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccce------ehhHHHHHHHHH
Confidence 9999999999999999999999999999985 999999999999999999999999887776 455588999999
Q ss_pred HHHHhcCCCCCCCC-CCceeeeccccCCCCcceeeEEeecCC----C-cEEEEccCCCcEEEEEEECCEEEEEEeecCCh
Q 010917 380 IKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGSP 453 (497)
Q Consensus 380 a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~g~~~----~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 453 (497)
|.++.+.....|.. .++ ......|.. +-..|+.. . .+++.......|.++.+++|+|+|+++ .|+.
T Consensus 300 a~hl~~~~~~~y~gsv~s---tkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GDt 371 (793)
T COG1251 300 ADHLCGGEAEAYEGSVTS---TKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGDT 371 (793)
T ss_pred HHHhccCcccccccccch---hhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-Eeec
Confidence 99999865544443 332 333444432 33445433 1 344454455779999999999999997 8999
Q ss_pred HHhhHHHHHHhCCCCCC
Q 010917 454 EEFQLLPTLARSQPFVD 470 (497)
Q Consensus 454 ~~~~~~~~~~~~~~~~~ 470 (497)
.+-..+..|+.++..++
T Consensus 372 ~d~~~l~~li~~~~~~s 388 (793)
T COG1251 372 SDGGWLLDLILKGADIS 388 (793)
T ss_pred ccchHHHHHHhcCCCcc
Confidence 99999999998888776
No 7
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=7.4e-46 Score=376.44 Aligned_cols=398 Identities=20% Similarity=0.285 Sum_probs=287.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCC-CHhHH
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ-TPEWY 139 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 139 (497)
++|||||||+||++||..|++.+. +.+|+|||+++++.|.++.++. ++.......... ... ...++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~-~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~-----------~~~~~~~~~ 68 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYA-----------LAYTPEKFY 68 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCC-CCCEEEEECCCCcccccCCcch-hhcCccCCHHHc-----------ccCCHHHHH
Confidence 589999999999999999998864 6799999999998888655442 111100000000 011 23445
Q ss_pred HHcCcEEEeCCcEEEEecCCCEEEECCC---c--EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE 214 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g---~--~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~ 214 (497)
++.|++++.+++|+.+|+++++|.+.++ + ++.||+||||||+.|.. |.. +.+++++++++.+...+.+.+.
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~ 144 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIK 144 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHh
Confidence 6789999998999999999999888653 2 47899999999999864 322 2467788888888877766543
Q ss_pred --cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE
Q 010917 215 --KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 292 (497)
Q Consensus 215 --~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v 292 (497)
.+++++|||+|++|+|+|..|+++|.+|+++++.+.+++ .+++++...+.+.|+++||++++++++++++..
T Consensus 145 ~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~----- 218 (438)
T PRK13512 145 ANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAINGN----- 218 (438)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC-----
Confidence 468999999999999999999999999999999998886 479999999999999999999999999999731
Q ss_pred EEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHH
Q 010917 293 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 371 (497)
Q Consensus 293 ~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~ 371 (497)
.+++++|+++++|.|++|+|++||++++++.++..+ +|+|.||+++||+.|||||+|||+..+....+..........
T Consensus 219 -~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~ 297 (438)
T PRK13512 219 -EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWG 297 (438)
T ss_pred -EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchH
Confidence 466778889999999999999999999999998875 577999999999999999999999754332222222334455
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCCCceeeeccccCCCCcceeeEEeecCCCc-------EEE-E--------ccCCCcEE
Q 010917 372 ARQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I--------GNFDPKIA 434 (497)
Q Consensus 372 A~~~g~~~a~~i~~~~~~~~-~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~~~-~--------~~~~~~~~ 434 (497)
|.+||+.+|+||++.....+ ...+..+...++.. +..+|....+ ... . ......+.
T Consensus 298 A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 370 (438)
T PRK13512 298 AHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHL 370 (438)
T ss_pred HHHHHHHHHHHhcCCCccccCCcccceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEE
Confidence 88999999999986432223 22222223333322 3334443211 000 0 01113366
Q ss_pred EEEEE--CCEEEEEEeecCC-hHHhh-HHHHHHhCCCCCC-hhh--hcCCCcHH---HHHHHHHc
Q 010917 435 TFWID--SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVD-KAK--LQQASSVE---EALEIARA 489 (497)
Q Consensus 435 ~~~~~--~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~---~~~~~~~~ 489 (497)
+++++ +++|+|+++++.+ +.++. .+..+++.+.+++ ... +..||+++ +.+..|++
T Consensus 371 klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~~~~~ 435 (438)
T PRK13512 371 RVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGY 435 (438)
T ss_pred EEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCccccHHHHHHH
Confidence 77664 4899999986664 55544 4456678888876 332 56677765 44554443
No 8
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.1e-45 Score=377.87 Aligned_cols=398 Identities=21% Similarity=0.292 Sum_probs=292.8
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 141 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (497)
+|||||||+||++||..|++.+. +.+|+|||+++.+.|..+.++. ++......+..+ .....+++++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~ 68 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIK 68 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHH
Confidence 79999999999999999999874 6699999999988776544432 111111111111 2345677888
Q ss_pred cCcEEEeCCcEEEEecCCCEEEECC---CcEEE--eccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc--
Q 010917 142 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 214 (497)
Q Consensus 142 ~~v~~~~~~~v~~i~~~~~~v~~~~---g~~i~--~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-- 214 (497)
.|++++++++|+.++++.+.+.+.+ +..+. ||+||||||++|. .|.++|.+.++++++.++.+...+.+.+.
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 9999998999999999998888754 55666 9999999999987 45667766778888888877777766543
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 294 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~ 294 (497)
.+++++|+|+|++|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++.+++. ++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~ 225 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG 225 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence 468999999999999999999999999999999998887567999999999999999999999999999963 344444
Q ss_pred EEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHH
Q 010917 295 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 373 (497)
Q Consensus 295 v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~ 373 (497)
+.++ +.++++|.+++|+|+.|+.+++++++++.+ +|+|.||++++|+.|||||+|||+..+....++......+..|.
T Consensus 226 v~~~-~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~ 304 (444)
T PRK09564 226 VVTD-KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN 304 (444)
T ss_pred EEeC-CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence 5554 457999999999999999999999998764 57899999999999999999999987655444433345777899
Q ss_pred HHHHHHHHHHhcCCCCCCCC-CCceeeeccccCCCCcceeeEEeecCCCc---------EEEE---------ccCCCcEE
Q 010917 374 QSAQHCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEI---------GNFDPKIA 434 (497)
Q Consensus 374 ~~g~~~a~~i~~~~~~~~~~-~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~~~~---------~~~~~~~~ 434 (497)
+||+.+|+||++.. ..++. .+......++.. +..+|....+ .... .+....|.
T Consensus 305 ~qg~~~a~ni~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (444)
T PRK09564 305 KLGRMVGENLAGRH-VSFKGTLGSACIKVLDLE-------AARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYV 376 (444)
T ss_pred HHHHHHHHHhcCCC-CCCCCcccceEEEECCEE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEE
Confidence 99999999999743 22221 111111122221 4445543221 0000 01113466
Q ss_pred EEEEE--CCEEEEEEeecCC-hHH-hhHHHHHHhCCCCCCh-hhh--cCCCcHHHHH
Q 010917 435 TFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVDK-AKL--QQASSVEEAL 484 (497)
Q Consensus 435 ~~~~~--~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~ 484 (497)
++.++ +++|+|+++++.+ ..+ +..+..+++++.+++. ... ..+|+++|+.
T Consensus 377 klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~ 433 (444)
T PRK09564 377 KLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTW 433 (444)
T ss_pred EEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCc
Confidence 66663 5899999986653 544 4455677888887762 222 3347777554
No 9
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.2e-44 Score=357.99 Aligned_cols=396 Identities=24% Similarity=0.369 Sum_probs=281.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCCC-----------------CCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPL-----------------DKK 116 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~l~~~-----------------~~~ 116 (497)
+..+|+||||+||||..||..+++.|. ++.++|+...+.-. . +--+|.++... ...
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~---kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL---KVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC---CEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 346999999999999999999999998 49999999522100 0 00011111000 000
Q ss_pred CCCCCCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC--CcEEEeccEEeccCCCCCcCCCCCC
Q 010917 117 PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIG 191 (497)
Q Consensus 117 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--g~~i~~d~lvlAtG~~~~~~~~~~g 191 (497)
..++...... ...........++++++|+++.+ +..-++ .++|.+.+ .+++.+|++|||||++|..+| .++
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~~~ 154 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPP-GPG 154 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-CCC
Confidence 0111000000 00000112233456679999886 333333 56777766 478999999999999998544 344
Q ss_pred CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917 192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 271 (497)
Q Consensus 192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (497)
+++...+ +++........+++++|||||++|+|+|..++++|.+||++++.+++++. +|+++++.+.+.|++.
T Consensus 155 --~~~~~~~----~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~ 227 (454)
T COG1249 155 --IDGARIL----DSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKG 227 (454)
T ss_pred --CCCCeEE----echhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHHhC
Confidence 3332222 23332222367999999999999999999999999999999999999985 8999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEeccCcCCCc--chhhcCCcccC-CCEEecCCCCCCCCcE
Q 010917 272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSSV-GGIQVDGQFRTRMPGI 346 (497)
Q Consensus 272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~~D~vv~a~G~~p~~~--~~~~~gl~~~~-g~i~vd~~~~t~~~~i 346 (497)
|+++++++.+++++..+++ ..+.+++|+ ++++|.|++|+|++||++ -+++.|++.++ |+|.||.+++|++|||
T Consensus 228 gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~I 305 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGI 305 (454)
T ss_pred CeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCE
Confidence 9999999999999865444 467777776 799999999999999998 38999999875 7999998888899999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC--CCCCCCCCceeeeccccCCCCcceeeEEeecCCCcE-
Q 010917 347 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ--THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET- 423 (497)
Q Consensus 347 ya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~--~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~- 423 (497)
||+|||+..+. ..+.|..||+.+|.||++.. ...|..+|+ ..|..+- +.++|....+.
T Consensus 306 yA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea~ 366 (454)
T COG1249 306 YAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEAK 366 (454)
T ss_pred EEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHHH
Confidence 99999988664 23459999999999999622 235777887 3454432 45566543211
Q ss_pred -----EEEc--cC-----------CCcEEEEEEE--CCEEEEEEeecCChHHhhHHHHH-HhCCCCCC-hh-hhcCCCcH
Q 010917 424 -----IEIG--NF-----------DPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD-KA-KLQQASSV 480 (497)
Q Consensus 424 -----~~~~--~~-----------~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~ 480 (497)
+..+ .+ ...|.|+.++ .++|+|+++++.+++++...-.+ ++.+.+.+ .. ..+.|||+
T Consensus 367 ~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~ 446 (454)
T COG1249 367 EAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL 446 (454)
T ss_pred hcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence 1111 11 2457788776 38999999988899988866654 67777655 33 46999999
Q ss_pred HHHHHHHH
Q 010917 481 EEALEIAR 488 (497)
Q Consensus 481 ~~~~~~~~ 488 (497)
+|++++|+
T Consensus 447 sE~~~~a~ 454 (454)
T COG1249 447 SEALKEAA 454 (454)
T ss_pred HHHHHHhC
Confidence 99999874
No 10
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.5e-43 Score=362.97 Aligned_cols=403 Identities=19% Similarity=0.271 Sum_probs=276.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCCCC-Ccccc--------------CCCC---CC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPAL-TKGYL--------------FPLD---KK 116 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~~l-~~~~l--------------~~~~---~~ 116 (497)
++.++||+||||||||++||..|+++|+ +|+|||++....- .+... ++.++ ++.. ..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV 78 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence 4556999999999999999999999998 8999998642110 11000 00000 0000 00
Q ss_pred CCCCCCCcccc---CCCCCCCCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCC
Q 010917 117 PARLPGFHTCV---GSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 192 (497)
Q Consensus 117 ~~~~~~~~~~~---~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~ 192 (497)
..++....... ..........++++. |++++.++.+. .+.+++.+ +++++.||+||||||+.|. .|.++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~ 153 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGL 153 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCC
Confidence 00110000000 000001233455666 99999875432 34567776 4567999999999999987 4556665
Q ss_pred CCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCC
Q 010917 193 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 272 (497)
Q Consensus 193 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~G 272 (497)
+..++.+.. .+......+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++.+.+.+.+++.|
T Consensus 154 ~~~~~~~~~------~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~G 226 (463)
T PRK06370 154 DEVGYLTNE------TIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREG 226 (463)
T ss_pred CcCceEcch------HhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCC
Confidence 444443322 22222245799999999999999999999999999999999998875 78899999999999999
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeccCcCCCc-c-hhhcCCccc-CCCEEecCCCCCCCCcEEE
Q 010917 273 VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFA 348 (497)
Q Consensus 273 V~i~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~iya 348 (497)
|++++++++.+++..+++....+... +++++++|.||+|+|.+||++ + +++.+++.+ +|++.||+++||+.|+|||
T Consensus 227 V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyA 306 (463)
T PRK06370 227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYA 306 (463)
T ss_pred CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEE
Confidence 99999999999986533322223333 345799999999999999998 4 677888775 5779999999999999999
Q ss_pred eccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccccCCCCcceeeEEeecCCCc----
Q 010917 349 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---- 422 (497)
Q Consensus 349 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---- 422 (497)
+|||+..+. ....|..||+.+|+||++..... +..+|+. . |..+ .+..+|....+
T Consensus 307 iGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~--~-~~~p------~ia~vG~te~~a~~~ 367 (463)
T PRK06370 307 AGDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPYA--T-YTDP------PLARVGMTEAEARKS 367 (463)
T ss_pred eeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCeE--E-EcCC------CcEeeeCCHHHHHHc
Confidence 999987542 33468999999999999643333 3345542 2 2211 14445543210
Q ss_pred ---E--EEE----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC--hhhhcCCCcHHH
Q 010917 423 ---T--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEE 482 (497)
Q Consensus 423 ---~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~ 482 (497)
+ ... .+....+.+++++ +++|+|+++++.++.++... ..+++.+.+++ ...++.|||++|
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (463)
T PRK06370 368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447 (463)
T ss_pred CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence 0 000 0112346777775 58999999877777776654 55678998887 344589999999
Q ss_pred HHHHHHccCCc
Q 010917 483 ALEIARAALPV 493 (497)
Q Consensus 483 ~~~~~~~~~~~ 493 (497)
+++.|++++..
T Consensus 448 ~~~~a~~~~~~ 458 (463)
T PRK06370 448 LIPTLAQALRR 458 (463)
T ss_pred HHHHHHHhhhh
Confidence 99999987643
No 11
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.3e-42 Score=356.48 Aligned_cols=403 Identities=18% Similarity=0.252 Sum_probs=280.3
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-CccccC--------CCCCCCCCCCCCc
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLF--------PLDKKPARLPGFH 124 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~l~--------~~~~~~~~~~~~~ 124 (497)
.+.++||+||||||||++||..|+++|+ +|+|||+.+...-. .... ++.+.. ........+....
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~ 78 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL 78 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence 3456899999999999999999999998 89999996433211 0001 110000 0000000000000
Q ss_pred cccCCC-----------CCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCCCC
Q 010917 125 TCVGSG-----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 191 (497)
Q Consensus 125 ~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~g 191 (497)
...... .......++++.+++++.+ ++..++....++...+|. .+.||+||||||+.|.. |+.++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~ 156 (461)
T PRK05249 79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVD 156 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCC
Confidence 000000 0011234456779999986 566666655556666664 68999999999999874 43344
Q ss_pred CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917 192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 271 (497)
Q Consensus 192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (497)
...+++.. ++.+......+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.++++
T Consensus 157 ~~~~~v~~------~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~ 229 (461)
T PRK05249 157 FDHPRIYD------SDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRDS 229 (461)
T ss_pred CCCCeEEc------HHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHHc
Confidence 33333332 3334333456899999999999999999999999999999999999875 8999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEE
Q 010917 272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA 348 (497)
Q Consensus 272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya 348 (497)
||++++++++++++..++ .+ .+.+.+|+++++|.|++|+|++||+++ ++++++..+ +|++.||+++||+.|+|||
T Consensus 230 gI~v~~~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA 307 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYA 307 (461)
T ss_pred CCEEEECCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEE
Confidence 999999999999985433 22 456778889999999999999999885 577888765 5779999999999999999
Q ss_pred eccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-----
Q 010917 349 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE----- 422 (497)
Q Consensus 349 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~----- 422 (497)
+|||+..+. ....|..+|+.+|.+|++... ..+..+|.. .|..+ .+.++|....+
T Consensus 308 iGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p------~ia~vG~te~~a~~~g 368 (461)
T PRK05249 308 VGDVIGFPS----------LASASMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIP------EISSVGKTEQELTAAK 368 (461)
T ss_pred eeecCCCcc----------cHhHHHHHHHHHHHHHcCCCcccccCCCCeE---EECCC------cceEecCCHHHHHHcC
Confidence 999997442 345699999999999996432 334556653 33322 13344443210
Q ss_pred ---------------EEEEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHH
Q 010917 423 ---------------TIEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 482 (497)
Q Consensus 423 ---------------~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~ 482 (497)
....+ ....+.+++++ +++|+|+++++.++.++... ..+++.+.+++ . ...+.|||++|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 447 (461)
T PRK05249 369 VPYEVGRARFKELARAQIAG-DNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE 447 (461)
T ss_pred CCeEEEEEccccccceeecC-CCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence 01111 12346777664 48999999988887776654 45678888886 3 44588999999
Q ss_pred HHHHHHccCCc
Q 010917 483 ALEIARAALPV 493 (497)
Q Consensus 483 ~~~~~~~~~~~ 493 (497)
+++.|++++..
T Consensus 448 ~~~~~~~~~~~ 458 (461)
T PRK05249 448 AYRVAALDGLN 458 (461)
T ss_pred HHHHHHHHHhc
Confidence 99999876654
No 12
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.3e-42 Score=353.42 Aligned_cols=392 Identities=20% Similarity=0.291 Sum_probs=268.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCC-ccccC--------------CC--C-CCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALT-KGYLF--------------PL--D-KKPAR 119 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~l~--------------~~--~-~~~~~ 119 (497)
.+||+||||||||++||..|+++|+ +|+|||++.... ..+...+ +.++. .. . ....+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC---cEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 4899999999999999999999998 899999864211 0000111 10000 00 0 00001
Q ss_pred CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917 120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 196 (497)
Q Consensus 120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g 196 (497)
++...... -..........+++.||+++.++.+. .+.+++.+ +++.+.||+||||||++|..++.++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~---- 150 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGA---- 150 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCC----
Confidence 00000000 00000112234556799999875432 23556666 456799999999999998743144442
Q ss_pred EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917 197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276 (497)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~ 276 (497)
.... +++.+......+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++.+.+++.|+++||+++
T Consensus 151 -~~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 151 -ELGT---DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEKEGINVH 225 (450)
T ss_pred -ceeE---cHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHHcCCEEE
Confidence 2211 23333333345799999999999999999999999999999999998864 899999999999999999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccc
Q 010917 277 KGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 352 (497)
Q Consensus 277 ~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~ 352 (497)
+++.+++++..+++. ..+.+++| +++++|.|++++|++||+++ ++.++++.+ +|++.||++++|+.|+|||+|||
T Consensus 226 ~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~ 304 (450)
T TIGR01421 226 KLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDV 304 (450)
T ss_pred cCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEec
Confidence 999999998643332 35677777 57999999999999999985 577888775 57799999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------
Q 010917 353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------- 422 (497)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------- 422 (497)
+..+. .+..|..||+.+|++|+++.. ..+..+|+ ..|..+- +..+|....+
T Consensus 305 ~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~g~ 365 (450)
T TIGR01421 305 VGKVE----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKYGK 365 (450)
T ss_pred CCCcc----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhcCC
Confidence 97542 455699999999999996432 23556665 2333321 3344433210
Q ss_pred --E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHH
Q 010917 423 --T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA 483 (497)
Q Consensus 423 --~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~ 483 (497)
. +... +....+.++.++ +++|+|+++++.++.++... ..+++.+.+++ . ..++.|||++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T TIGR01421 366 ENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEE 445 (450)
T ss_pred CCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHH
Confidence 0 0000 111236666554 58999999888777776644 55678998887 3 335899999999
Q ss_pred HHHH
Q 010917 484 LEIA 487 (497)
Q Consensus 484 ~~~~ 487 (497)
+..+
T Consensus 446 ~~~~ 449 (450)
T TIGR01421 446 LVTM 449 (450)
T ss_pred Hhhc
Confidence 8765
No 13
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-42 Score=355.32 Aligned_cols=401 Identities=22% Similarity=0.303 Sum_probs=273.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-CccccCCC------------C----CCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLFPL------------D----KKPAR 119 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l~~~------------~----~~~~~ 119 (497)
..+||+||||||||++||..|+++|+ +|+|||++..-. ...... ++.++... . ....+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 35899999999999999999999998 899999976211 011111 11111000 0 00000
Q ss_pred CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC-CcEEEeccEEeccCCCCCcCCCCCCCCCC
Q 010917 120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLP 195 (497)
Q Consensus 120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-g~~i~~d~lvlAtG~~~~~~~~~~g~~~~ 195 (497)
+.....+. .......+...+++.|++++.+ ++..+++...++...+ ++.+.||+||||||+.|..+ ||...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCC
Confidence 00000000 0000001223456679999986 5666665544554323 46799999999999998643 343333
Q ss_pred cEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEE
Q 010917 196 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 275 (497)
Q Consensus 196 gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i 275 (497)
+... .+..+.. .....+++++|||+|++|+|+|..|+++|.+||++++.+.+++. +++++...+.+.++++||++
T Consensus 156 ~~~v-~~~~~~~---~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i 230 (462)
T PRK06416 156 GRVI-WTSDEAL---NLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKI 230 (462)
T ss_pred CCeE-EcchHhh---CccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEE
Confidence 4221 1222222 22235789999999999999999999999999999999999875 78999999999999999999
Q ss_pred EcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeccCcCCCcch--hhcCCcccCCCEEecCCCCCCCCcEEEec
Q 010917 276 VKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIG 350 (497)
Q Consensus 276 ~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~iya~G 350 (497)
+++++|++++.+++ .+ .+.+.++ +++++|.||+|+|.+|+++++ +++++..++|++.||++++|+.|+|||+|
T Consensus 231 ~~~~~V~~i~~~~~-~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiG 308 (462)
T PRK06416 231 KTGAKAKKVEQTDD-GV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIG 308 (462)
T ss_pred EeCCEEEEEEEeCC-EE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEee
Confidence 99999999986433 33 3555555 679999999999999999874 67888777778999999999999999999
Q ss_pred cccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CCCCceeeeccccCCCCcceeeEEeecCCCc------
Q 010917 351 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------ 422 (497)
Q Consensus 351 D~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------ 422 (497)
||+..+. .+..|..||+.+|.||++. ...+ ..+|. ...++.. +..+|....+
T Consensus 309 D~~~~~~----------~~~~A~~~g~~aa~ni~~~-~~~~~~~~~~~--~~~~~~~-------~a~vG~te~~a~~~g~ 368 (462)
T PRK06416 309 DIVGGPM----------LAHKASAEGIIAAEAIAGN-PHPIDYRGIPA--VTYTHPE-------VASVGLTEAKAKEEGF 368 (462)
T ss_pred ecCCCcc----------hHHHHHHHHHHHHHHHcCC-CCCCCCCCCCe--EEECCCc-------eEEEeCCHHHHHhcCC
Confidence 9997432 4567999999999999963 3333 33444 2333322 4455544321
Q ss_pred -E-EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHH
Q 010917 423 -T-IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL 484 (497)
Q Consensus 423 -~-~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~ 484 (497)
. ...-. ....+.++.++ +++|+|+++++.++.++... ..+++.+.+++ . .....|||++|++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 448 (462)
T PRK06416 369 DVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEAL 448 (462)
T ss_pred CeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHH
Confidence 0 01100 11346666663 59999999878777776644 55678898886 3 3357899999999
Q ss_pred HHHHccCCc
Q 010917 485 EIARAALPV 493 (497)
Q Consensus 485 ~~~~~~~~~ 493 (497)
+.|++.+..
T Consensus 449 ~~~~~~~~~ 457 (462)
T PRK06416 449 GEAALAAAG 457 (462)
T ss_pred HHHHHHhcc
Confidence 999977654
No 14
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=4e-42 Score=351.37 Aligned_cols=392 Identities=20% Similarity=0.300 Sum_probs=272.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCCcc-cc-----------------CCCCCCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALTKG-YL-----------------FPLDKKPAR 119 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~~~-~l-----------------~~~~~~~~~ 119 (497)
.+||+||||||||++||..|+++|+ +|+|||++.... ..+...+.. ++ ........+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence 5899999999999999999999998 899999863210 000001000 00 000000000
Q ss_pred CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917 120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 196 (497)
Q Consensus 120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g 196 (497)
+....... -..+.......+.+.||+++.+ ++..++ .+++.+ +++++.||+||||||+.|. .|.++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~---- 151 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPS-IPDIPGA---- 151 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc----
Confidence 10000000 0000011223355679999986 566665 467777 6778999999999999986 4544442
Q ss_pred EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917 197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276 (497)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~ 276 (497)
.... +++.+......+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++. +++++...+.+.|+++||+++
T Consensus 152 -~~~~---~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~~GV~i~ 226 (450)
T PRK06116 152 -EYGI---TSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEKKGIRLH 226 (450)
T ss_pred -ceeE---chhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHHCCcEEE
Confidence 2221 12222222345789999999999999999999999999999999988864 799999999999999999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEecccc
Q 010917 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 353 (497)
Q Consensus 277 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~ 353 (497)
++++|.+++..+++.+ .+.+.+|+++++|.||+|+|.+|+++. ++.++++.+ +|+|.||+++||+.|||||+|||+
T Consensus 227 ~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~ 305 (450)
T PRK06116 227 TNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVT 305 (450)
T ss_pred CCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecC
Confidence 9999999986544433 467788889999999999999999985 577888775 577999999999999999999998
Q ss_pred ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCC-------c-
Q 010917 354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E- 422 (497)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~- 422 (497)
..+. .+..|..||+.+|.||++... ..|..+|+ ..|+.+- +..+|.... +
T Consensus 306 ~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~~~ 366 (450)
T PRK06116 306 GRVE----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYGED 366 (450)
T ss_pred CCcC----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCCCC
Confidence 6432 455799999999999997433 24456665 3344321 344454321 1
Q ss_pred -E-EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHH
Q 010917 423 -T-IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL 484 (497)
Q Consensus 423 -~-~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~ 484 (497)
. +.... ....+.+++++ +++|+|+++++.++.++... ..+++++.+++ . ..++.|||++|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 446 (450)
T PRK06116 367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEF 446 (450)
T ss_pred cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHH
Confidence 1 01111 12346777764 48999999877777766544 55678998887 3 3458999999999
Q ss_pred HHHH
Q 010917 485 EIAR 488 (497)
Q Consensus 485 ~~~~ 488 (497)
..++
T Consensus 447 ~~~~ 450 (450)
T PRK06116 447 VTMR 450 (450)
T ss_pred hhcC
Confidence 8763
No 15
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-42 Score=352.37 Aligned_cols=402 Identities=16% Similarity=0.218 Sum_probs=270.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCCC-ccccC----------------CCCCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPALT-KGYLF----------------PLDKKPA 118 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l~-~~~l~----------------~~~~~~~ 118 (497)
.++||+||||||||++||..|++.|+ +|+|||+.+.+.- ++...+ +.++. .......
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~ 79 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKI 79 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 35899999999999999999999998 8999998643221 111111 11000 0000000
Q ss_pred CCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCcCCCCCCCC
Q 010917 119 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGY 193 (497)
Q Consensus 119 ~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~~~~g~~ 193 (497)
++..+.... -..+.......+++.||+++.+ ++..++.....+...+| .++.||+||||||++|..+|.+++ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-~ 157 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-D 157 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-C
Confidence 000000000 0000001123345679999986 45545543333444455 478999999999999875554433 2
Q ss_pred CCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCc
Q 010917 194 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 273 (497)
Q Consensus 194 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV 273 (497)
.+++.. .....+....+++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++...+++.|+++ |
T Consensus 158 ~~~v~~------~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v 229 (471)
T PRK06467 158 DPRIWD------STDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-F 229 (471)
T ss_pred CCcEEC------hHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-e
Confidence 233332 2222222345789999999999999999999999999999999999986 8999999999999998 9
Q ss_pred EEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcE
Q 010917 274 KFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 346 (497)
Q Consensus 274 ~i~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~i 346 (497)
++++++++++++..+++ + .+.+.+ + +++++|.||+++|++||+++ ++.++++.+ +|+|.||+++||+.|+|
T Consensus 230 ~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~V 307 (471)
T PRK06467 230 NIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHI 307 (471)
T ss_pred EEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCE
Confidence 99999999999854333 2 344433 2 46999999999999999985 467788775 57799999999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc---
Q 010917 347 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--- 422 (497)
Q Consensus 347 ya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~--- 422 (497)
||+|||+..+. ....|..+|+.+|.+|++... .++...|+. ..++.. +..+|....+
T Consensus 308 yAiGDv~~~~~----------la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~ea~~ 368 (471)
T PRK06467 308 FAIGDIVGQPM----------LAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--AYTEPE-------VAWVGLTEKEAKE 368 (471)
T ss_pred EEehhhcCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCc-------eeEEECCHHHHHh
Confidence 99999996432 445699999999999986432 234456653 222221 4445543221
Q ss_pred ----E-EEE-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHH
Q 010917 423 ----T-IEI-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE 481 (497)
Q Consensus 423 ----~-~~~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~ 481 (497)
+ ... .+....+.+++++ +++|+|+++++.++.++... ..+++.+.+++ . ..++.|||++
T Consensus 369 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~ 448 (471)
T PRK06467 369 EGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLH 448 (471)
T ss_pred cCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChH
Confidence 0 000 0012346777664 48999999888877776544 45678888876 3 3357899999
Q ss_pred HHHHHHHccCCcc
Q 010917 482 EALEIARAALPVE 494 (497)
Q Consensus 482 ~~~~~~~~~~~~~ 494 (497)
|+++.|++++..+
T Consensus 449 e~~~~a~~~~~~~ 461 (471)
T PRK06467 449 ESVGLAAEAFEGS 461 (471)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999876543
No 16
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=5.4e-42 Score=349.26 Aligned_cols=391 Identities=18% Similarity=0.248 Sum_probs=269.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCCC-ccccC--------------CC--CCCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPALT-KGYLF--------------PL--DKKPAR 119 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~~l~-~~~l~--------------~~--~~~~~~ 119 (497)
++||+||||||||++||..++++|+ +|+|+|++. ..-. +-..+ +.++. .. .....+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD 77 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence 4899999999999999999999998 899999853 2110 00011 10000 00 000000
Q ss_pred CCCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917 120 LPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 196 (497)
Q Consensus 120 ~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g 196 (497)
+...... .-..+...+...+++.|++++.+ ++..+++....+. .+|+.+.||+||||||+.|. .|.++|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~--- 151 (446)
T TIGR01424 78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE--- 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc---
Confidence 0000000 00000112334566789999886 7777776543343 45678999999999999986 45444422
Q ss_pred EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917 197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276 (497)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~ 276 (497)
...+ ++........+++++|||+|++|+|+|..+++.|.+|+++++.+.+++. +++++...+.+.+++.||+++
T Consensus 152 --~~~~---~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~ 225 (446)
T TIGR01424 152 --LGIT---SNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIH 225 (446)
T ss_pred --ceec---hHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEE
Confidence 1111 2222222235789999999999999999999999999999999988875 789999999999999999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEecccc
Q 010917 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 353 (497)
Q Consensus 277 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~ 353 (497)
+++++.+++..+++ ..+.+.+|+++++|.||+|+|.+||++. +++++++.+ +|++.||+++||+.|||||+|||+
T Consensus 226 ~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~ 303 (446)
T TIGR01424 226 PQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVT 303 (446)
T ss_pred eCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccC
Confidence 99999999854333 2466778889999999999999999875 577888765 577999999999999999999999
Q ss_pred ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEeecCCC--------cE
Q 010917 354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ET 423 (497)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~--------~~ 423 (497)
..+. ....|..||+.++.||+++... ++..+|+. .|..+- +..+|.... ..
T Consensus 304 ~~~~----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~---if~~p~------ia~vG~te~~a~~~~~~~~ 364 (446)
T TIGR01424 304 DRIN----------LTPVAIMEATCFANTEFGNNPTKFDHDLIATA---VFSQPP------LGTVGLTEEEAREKFTGDI 364 (446)
T ss_pred CCcc----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCeE---EeCCch------hEEEECCHHHHHhhcCCCE
Confidence 6432 4456999999999999974432 33456653 333321 334443221 00
Q ss_pred -EEE-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHHH
Q 010917 424 -IEI-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEI 486 (497)
Q Consensus 424 -~~~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 486 (497)
+.. ......+.++.++ +++|+|+++++..+.++... ..+++++.+++ . ...+.|||++|++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 444 (446)
T TIGR01424 365 LVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVT 444 (446)
T ss_pred EEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhh
Confidence 000 1112346777664 58999999888777776655 55678998887 3 445899999999886
Q ss_pred H
Q 010917 487 A 487 (497)
Q Consensus 487 ~ 487 (497)
+
T Consensus 445 ~ 445 (446)
T TIGR01424 445 M 445 (446)
T ss_pred c
Confidence 5
No 17
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.6e-42 Score=351.92 Aligned_cols=401 Identities=17% Similarity=0.249 Sum_probs=273.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-CccccC---------------CC--CCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLF---------------PL--DKK 116 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l~---------------~~--~~~ 116 (497)
...++||+||||||||++||..|++.|. +|+|||++..-. .++... ++.++. +. ...
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 3457899999999999999999999998 899999874211 000000 010000 00 000
Q ss_pred CCCCCCCcccc---CCCCCC-CCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCC
Q 010917 117 PARLPGFHTCV---GSGGER-QTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK 189 (497)
Q Consensus 117 ~~~~~~~~~~~---~~~~~~-~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~ 189 (497)
..++..+.... -..+.. .....+++. +++++.+ ++..++....+|++.+|. +++||+||||||+.|+ .|++
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~i 157 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPPV 157 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCCC
Confidence 00000000000 000000 011223333 7898885 788899888888888773 7999999999999987 4555
Q ss_pred CCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHH
Q 010917 190 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 269 (497)
Q Consensus 190 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~ 269 (497)
+|.+...+.+. .+... ....+++++|||+|++|+|+|..|+++|.+|+++++. ++++. +++++.+.+++.++
T Consensus 158 ~G~~~~~~~~~---~~~~~---l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~~-~~~~~~~~l~~~l~ 229 (468)
T PRK14694 158 PGLAETPYLTS---TSALE---LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RVLSQ-EDPAVGEAIEAAFR 229 (468)
T ss_pred CCCCCCceEcc---hhhhc---hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCCCC-CCHHHHHHHHHHHH
Confidence 66432222221 22222 2234789999999999999999999999999999874 56654 78999999999999
Q ss_pred HCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch--hhcCCcccCCCEEecCCCCCCCCcEE
Q 010917 270 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIF 347 (497)
Q Consensus 270 ~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~iy 347 (497)
+.||++++++.+.+++.+ ++. ..+.+.++ ++++|.||+|+|.+||++++ ++++++.++|+|.||++++|+.|+||
T Consensus 230 ~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~Iy 306 (468)
T PRK14694 230 REGIEVLKQTQASEVDYN-GRE-FILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIY 306 (468)
T ss_pred hCCCEEEeCCEEEEEEEc-CCE-EEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEE
Confidence 999999999999999854 332 23455444 69999999999999999874 56788777788999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc----
Q 010917 348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---- 422 (497)
Q Consensus 348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---- 422 (497)
|+|||+..+. ....|..+|+.+|.||++... .++..+|.. ..++.. +..+|....+
T Consensus 307 A~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~ 367 (468)
T PRK14694 307 AAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQAQ 367 (468)
T ss_pred EEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHHc
Confidence 9999997543 345688999999999986432 234445543 222221 4455554321
Q ss_pred ---E-EEE-----------ccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHH
Q 010917 423 ---T-IEI-----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 482 (497)
Q Consensus 423 ---~-~~~-----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~ 482 (497)
. ... ......+.++.++ +++|+|+++++.++.++... ..+++.+.+++ . ...+.|||++|
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (468)
T PRK14694 368 GYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVE 447 (468)
T ss_pred CCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHH
Confidence 0 000 0112346777664 58999999877777776544 55678888887 3 34578999999
Q ss_pred HHHHHHccCC
Q 010917 483 ALEIARAALP 492 (497)
Q Consensus 483 ~~~~~~~~~~ 492 (497)
+++.|++.+.
T Consensus 448 ~~~~~~~~~~ 457 (468)
T PRK14694 448 GLKLCAQTFT 457 (468)
T ss_pred HHHHHHHhhh
Confidence 9999988653
No 18
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.9e-42 Score=350.33 Aligned_cols=401 Identities=20% Similarity=0.274 Sum_probs=268.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCC-CccccCCCC-----C--CCCCCCCCccccC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPAL-TKGYLFPLD-----K--KPARLPGFHTCVG 128 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~l~~~~-----~--~~~~~~~~~~~~~ 128 (497)
++||+||||||||++||..++++|+ +|+|||+.....- ++... ++.++.... . ...++ +......
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~-gi~~~~~ 78 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHL-GIEVKPT 78 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhc-CccccCc
Confidence 4899999999999999999999998 8999997432211 11011 111000000 0 00000 0000000
Q ss_pred CCCC--------------CCCHhHHHHcCcEEEeCCcEEEEecCCC-EEEECCCc--EEEeccEEeccCCCCCcCCCCCC
Q 010917 129 SGGE--------------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGK--LLKYGSLIVATGCTASRFPEKIG 191 (497)
Q Consensus 129 ~~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~g 191 (497)
.++. .....++++.+++++.+. . .++.+.+ .+...+|+ ++.||+||||||++|.. ++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---ipg 153 (466)
T PRK06115 79 LNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---LPG 153 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---CCC
Confidence 0000 011223455678888763 3 3333322 33445553 69999999999998753 344
Q ss_pred CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917 192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 271 (497)
Q Consensus 192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (497)
...++...+. ++........+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++...+++.|++.
T Consensus 154 ~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~ 228 (466)
T PRK06115 154 VTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTKQ 228 (466)
T ss_pred CCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhc
Confidence 4444543332 3333333346899999999999999999999999999999999999885 7899999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEe-C--CCcEEEcCEEEEeccCcCCCcc--hhhcCCcccCCCEEecCCCCCCCCcE
Q 010917 272 GVKFVKGASIKNLEAGSDGRVAAVKL-E--DGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGI 346 (497)
Q Consensus 272 GV~i~~~~~v~~i~~~~~~~v~~v~~-~--~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~i 346 (497)
||++++++++++++..+++....+.. . +++++++|.|++++|++||++. ++..++..+++++.||++++|+.|+|
T Consensus 229 gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~I 308 (466)
T PRK06115 229 GMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGV 308 (466)
T ss_pred CCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCCE
Confidence 99999999999998643332222222 1 2357999999999999999885 45677777656688999999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc---
Q 010917 347 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--- 422 (497)
Q Consensus 347 ya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~--- 422 (497)
||+|||+..+. ....|..||+.+|+||++... ..|..+|+.. |..+ .+..+|....+
T Consensus 309 yA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~---~t~p------~ia~vGlte~~a~~ 369 (466)
T PRK06115 309 WVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGVI---YTRP------EVATVGKTEEQLKA 369 (466)
T ss_pred EEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---ECCc------ccEEeeCCHHHHHH
Confidence 99999997542 445699999999999986432 3455666532 3221 13445543221
Q ss_pred ----E-EE------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcH
Q 010917 423 ----T-IE------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSV 480 (497)
Q Consensus 423 ----~-~~------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~ 480 (497)
+ +. .++ ...+.++.++ +++|+|+++++.++.++... ..+++.+.+++ . ...+.|||+
T Consensus 370 ~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~ 448 (466)
T PRK06115 370 EGRAYKVGKFPFTANSRAKINHE-TEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTR 448 (466)
T ss_pred CCCCEEEEEEecccChhhHhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCh
Confidence 1 00 111 1346777664 48999999877777775544 55678888886 3 335789999
Q ss_pred HHHHHHHHccCCcc
Q 010917 481 EEALEIARAALPVE 494 (497)
Q Consensus 481 ~~~~~~~~~~~~~~ 494 (497)
+|.++.|++.+..+
T Consensus 449 ~e~~~~a~~~~~~~ 462 (466)
T PRK06115 449 SEALRQAAMNVEGW 462 (466)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999876554
No 19
>PLN02507 glutathione reductase
Probab=100.00 E-value=3.6e-41 Score=345.79 Aligned_cols=396 Identities=19% Similarity=0.237 Sum_probs=273.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCC---CCCCCC-ccccCC--------C-CC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPY---ERPALT-KGYLFP--------L-DK 115 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~---------~~~~~---~~~~l~-~~~l~~--------~-~~ 115 (497)
...+||+||||||||+.||..+++.|. +|+|||+. ....- .+-..+ +.++.. . ..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~ 99 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKN 99 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHh
Confidence 345899999999999999999999998 89999962 11110 000011 111000 0 00
Q ss_pred CCCCCCCCccccCC-----------CCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCC
Q 010917 116 KPARLPGFHTCVGS-----------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCT 182 (497)
Q Consensus 116 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~ 182 (497)
.-.+......+... .+.......+...+|+++.+ ++..+++...++.+.+|+ .+.||+||||||+.
T Consensus 100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 00000000000000 00001123345579999985 778888877788877775 57899999999999
Q ss_pred CCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHH
Q 010917 183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 262 (497)
Q Consensus 183 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~ 262 (497)
|.. |.++|.+ ...+..+...+ ...+++++|||+|++|+|+|..++++|.+|+++++.+.+++. +++++..
T Consensus 179 p~~-p~ipG~~-----~~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~ 248 (499)
T PLN02507 179 AQR-PNIPGKE-----LAITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRA 248 (499)
T ss_pred CCC-CCCCCcc-----ceechHHhhhh---hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHH
Confidence 874 5444421 11222333222 234789999999999999999999999999999999988865 8999999
Q ss_pred HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCC
Q 010917 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF 339 (497)
Q Consensus 263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~ 339 (497)
.+.+.|+++||+++++++|++++..+ +.+ .+.+.+|+++++|.|++++|++||+++ +++++++.+ +|+|.||+++
T Consensus 249 ~l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~ 326 (499)
T PLN02507 249 VVARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS 326 (499)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC
Confidence 99999999999999999999998543 332 466778889999999999999999987 578888875 5779999999
Q ss_pred CCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEee
Q 010917 340 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFG 417 (497)
Q Consensus 340 ~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g 417 (497)
||+.|||||+|||+..+. ....|..||+.++.||+++... .+..+|+ ..|+++- +..+|
T Consensus 327 ~Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~vG 387 (499)
T PLN02507 327 RTNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVVG 387 (499)
T ss_pred cCCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEEe
Confidence 999999999999997432 3456999999999999875332 3444564 3444421 33344
Q ss_pred cCCC--------cE-EE-----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-h
Q 010917 418 DNVG--------ET-IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-A 472 (497)
Q Consensus 418 ~~~~--------~~-~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~ 472 (497)
.... .. +. .+.....+.++.++ +++|+|+++++.++.++... ..+++.+.+++ . .
T Consensus 388 lte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~ 467 (499)
T PLN02507 388 LSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDS 467 (499)
T ss_pred CCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence 3221 00 00 01112346677664 48999999877777665544 55678898886 3 4
Q ss_pred hhcCCCcHHHHHHHHH
Q 010917 473 KLQQASSVEEALEIAR 488 (497)
Q Consensus 473 ~~~~~~~~~~~~~~~~ 488 (497)
.++.|||++|++..++
T Consensus 468 ~~~~hPt~~E~~~~~~ 483 (499)
T PLN02507 468 TVGIHPSAAEEFVTMR 483 (499)
T ss_pred cCcCCCChHHHHHHHH
Confidence 4689999999998875
No 20
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-41 Score=346.30 Aligned_cols=396 Identities=18% Similarity=0.220 Sum_probs=270.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCCccccCCCCCCCCCCCCCccc---cCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPLDKKPARLPGFHTC---VGSGG 131 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~----~~~l~~~~l~~~~~~~~~~~~~~~~---~~~~~ 131 (497)
+.+||+||||||||++||..|+++|+ +|+|||+++..... +...+...+........++...... ....+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFL 78 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 35899999999999999999999998 89999997532110 0001100000000000011000000 00000
Q ss_pred CCCCHhHH-HHcCcEEEeCCcEEEEecCCCEEEECCCc-EEEeccEEeccCCCCCcCCCCCCCC-CCcEEEecCHHHHHH
Q 010917 132 ERQTPEWY-KEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADADA 208 (497)
Q Consensus 132 ~~~~~~~~-~~~~v~~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lvlAtG~~~~~~~~~~g~~-~~gv~~~~~~~~~~~ 208 (497)
.......+ +..+++++.+ ++..++.....+.+.++. ++.||+||||||+.|. .|.++|.+ .++++. +..
T Consensus 79 ~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~------~~~ 150 (441)
T PRK08010 79 RNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYD------STG 150 (441)
T ss_pred HHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEEC------hhH
Confidence 00001122 2348998875 677777766667776775 6999999999999987 45566642 345443 233
Q ss_pred HHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917 209 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 288 (497)
Q Consensus 209 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~ 288 (497)
+......+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++...+.+.++++||++++++++++++..
T Consensus 151 ~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~- 228 (441)
T PRK08010 151 LLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERISHH- 228 (441)
T ss_pred hhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-
Confidence 3333345789999999999999999999999999999999998876 68899999999999999999999999999854
Q ss_pred CCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917 289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 365 (497)
Q Consensus 289 ~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~ 365 (497)
++.+ .+.++++ ++++|.|++|+|.+||+++ +++++++.+ +|+|.||+++||+.|||||+|||+..+.
T Consensus 229 ~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~-------- 298 (441)
T PRK08010 229 ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ-------- 298 (441)
T ss_pred CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--------
Confidence 3333 3455555 5899999999999999876 467788765 5789999999999999999999998543
Q ss_pred cccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E-EE---------
Q 010917 366 VEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T-IE--------- 425 (497)
Q Consensus 366 ~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~-~~--------- 425 (497)
....|..+|+.++.+|++... ..+..+|.. ..++.. +..+|....+ . ..
T Consensus 299 --~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~ 367 (441)
T PRK08010 299 --FTYISLDDYRIVRDELLGEGKRSTDDRKNVPYS--VFMTPP-------LSRVGMTEEQARESGADIQVVTLPVAAIPR 367 (441)
T ss_pred --chhHHHHHHHHHHHHHcCCCCcccCccCCCCEE--EECCCC-------ceeeeCCHHHHHHcCCCeEEEEEecCcChh
Confidence 223488899999999986322 133445642 222222 3444543211 0 00
Q ss_pred ---EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHHHHHc
Q 010917 426 ---IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIARA 489 (497)
Q Consensus 426 ---~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 489 (497)
.++ ...+.++.++ +++|+|+++++.++.++... ..+++++.+++ . ..++.|||++|.+..|+.
T Consensus 368 ~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 368 ARVMND-TRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred hhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 111 1336777664 59999999878777776655 45678888876 2 445889999999998864
No 21
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.9e-41 Score=346.68 Aligned_cols=403 Identities=20% Similarity=0.284 Sum_probs=270.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCC-ccccC------------CC----CCCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALT-KGYLF------------PL----DKKPAR 119 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~l~------------~~----~~~~~~ 119 (497)
..+||+||||||||++||..|+++|+ +|+|||++.... -.+...+ +.++. .. .....+
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 46899999999999999999999998 899999863211 0000011 11000 00 000000
Q ss_pred CCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecC-------CCEEEECCC--cEEEeccEEeccCCCCCcCC
Q 010917 120 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRFP 187 (497)
Q Consensus 120 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~ 187 (497)
+....... -..+.......+++.+++++.+ ++..++.. ...+.+.+| .++.||+||||||+.|..+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p 158 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELP 158 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCC
Confidence 00000000 0000001123456679999986 67778876 456666676 57999999999999986443
Q ss_pred CCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHH
Q 010917 188 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 267 (497)
Q Consensus 188 ~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~ 267 (497)
+....+...+ +..+ .......+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++.+.+.+.
T Consensus 159 ---~~~~~~~~~~-~~~~---~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~ 230 (472)
T PRK05976 159 ---GLPFDGEYVI-SSDE---ALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARL 230 (472)
T ss_pred ---CCCCCCceEE-cchH---hhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHH
Confidence 2223332222 1122 2222234789999999999999999999999999999999998875 789999999999
Q ss_pred HHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcc--hhhcCCcccCCCEEecCCCCCCC
Q 010917 268 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRM 343 (497)
Q Consensus 268 l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~ 343 (497)
++++||++++++++++++..+++.+..+.+.+| +++++|.||+|+|.+|+++. ++..++..++|++.||++++|+.
T Consensus 231 l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~ 310 (472)
T PRK05976 231 LKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKE 310 (472)
T ss_pred HHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCC
Confidence 999999999999999997421333434455566 36999999999999999875 45666665668899999999999
Q ss_pred CcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCC--CCCceeeeccccCCCCcceeeEEeecCCC
Q 010917 344 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421 (497)
Q Consensus 344 ~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~g~~~~ 421 (497)
|+|||+|||+..+. .+..|..+|+.++.+|++.....++ ..|. ...++.. +..+|....
T Consensus 311 ~~IyAiGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~-------~a~vG~te~ 371 (472)
T PRK05976 311 RHIYAIGDVIGEPQ----------LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPE-------VASVGLTEE 371 (472)
T ss_pred CCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCc-------eEEEeCCHH
Confidence 99999999986432 4556999999999999864323333 3443 2222221 333443321
Q ss_pred -------cEE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCC-h-hhhcCC
Q 010917 422 -------ETI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD-K-AKLQQA 477 (497)
Q Consensus 422 -------~~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~ 477 (497)
++. ..- +....+.++.++ +++|+|+++++.++.++.. +..+++.+.+++ . ..++.|
T Consensus 372 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 451 (472)
T PRK05976 372 EAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPH 451 (472)
T ss_pred HHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccC
Confidence 000 000 012346666664 4899999987777776554 455678888886 3 335789
Q ss_pred CcHHHHHHHHHccCC
Q 010917 478 SSVEEALEIARAALP 492 (497)
Q Consensus 478 ~~~~~~~~~~~~~~~ 492 (497)
||++|.++.|++++.
T Consensus 452 Pt~~e~~~~~~~~~~ 466 (472)
T PRK05976 452 PTLSEAIQEAALAAD 466 (472)
T ss_pred CChHHHHHHHHHHhh
Confidence 999999999987653
No 22
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=2.9e-41 Score=347.37 Aligned_cols=410 Identities=16% Similarity=0.240 Sum_probs=269.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCCccccCCCCCC----------------CC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALTKGYLFPLDKK----------------PA 118 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~~~~l~~~~~~----------------~~ 118 (497)
...++||+||||||||++||..+++.|. +|+|||++..-. -++-..+...+...... ..
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~ 121 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSF 121 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCcc
Confidence 3456899999999999999999999997 899999873211 01111111111100000 00
Q ss_pred CCCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecC--------------------CCEE------EECCCcE
Q 010917 119 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIE--------------------KQTL------ITNSGKL 169 (497)
Q Consensus 119 ~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~--------------------~~~v------~~~~g~~ 169 (497)
+++....... ........+.+++.||+++.+.. .-.+.. ..++ ..++|++
T Consensus 122 d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a-~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 122 NLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKG-SLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 0000000000 00011122345667999988643 112211 0112 2346678
Q ss_pred EEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917 170 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 249 (497)
Q Consensus 170 i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 249 (497)
+.||+||||||+.|. .|.++|.+ .+. +++.+... ..+++++|||+|++|+|+|..|.++|.+||++++.+
T Consensus 201 i~ad~lVIATGS~P~-~P~IpG~~--~v~------ts~~~~~l-~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 201 IEGKNILIAVGNKPI-FPDVKGKE--FTI------SSDDFFKI-KEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred EECCEEEEecCCCCC-CCCCCCce--eEE------EHHHHhhc-cCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 999999999999987 45555422 111 23333332 338999999999999999999999999999999999
Q ss_pred cchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC-CcEEEcCEEEEeccCcCCCcchh--hcCC
Q 010917 250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE--RVGL 326 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~~D~vv~a~G~~p~~~~~~--~~gl 326 (497)
++++. +++++.+.+.+.|+++||+++++..+.+++..+++.+. +.+.+ ++++++|.|++++|++|+++++. ..++
T Consensus 271 ~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~ 348 (561)
T PTZ00058 271 RLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNI 348 (561)
T ss_pred ccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccce
Confidence 98864 79999999999999999999999999999864333332 33334 45799999999999999998763 3444
Q ss_pred cccCCCEEecCCCCCCCCcEEEeccccccCCc-----------------------cCCccc-ccccHHHHHHHHHHHHHH
Q 010917 327 NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQHCIKA 382 (497)
Q Consensus 327 ~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~-----------------------~~g~~~-~~~~~~~A~~~g~~~a~~ 382 (497)
..++|+|.||+++||+.|+|||+|||+..+.. ..+... .......|..||+.+|.|
T Consensus 349 ~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~n 428 (561)
T PTZ00058 349 KTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADR 428 (561)
T ss_pred ecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHH
Confidence 45568899999999999999999999984321 111111 244667799999999999
Q ss_pred HhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCCCc---------EEE-------------E---ccCCCcEEE
Q 010917 383 LLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE-------------I---GNFDPKIAT 435 (497)
Q Consensus 383 i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~~~-------------~---~~~~~~~~~ 435 (497)
|++... ..+..+|.. .|..+- +..+|....+ ... . +.....+.+
T Consensus 429 i~g~~~~~~~~~~ip~~---vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~K 499 (561)
T PTZ00058 429 LFGPFSRTTNYKLIPSV---IFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLK 499 (561)
T ss_pred HhCCCCcccCCCCCCeE---EeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEE
Confidence 997422 335556653 333210 2233332110 000 0 011234666
Q ss_pred EEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC--hhhhcCCCcHHHHHHHHHccC
Q 010917 436 FWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEALEIARAAL 491 (497)
Q Consensus 436 ~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 491 (497)
++++ +++|+|+++++.++.++... ..+++++.+++ ...++.|||++|++..++.++
T Consensus 500 li~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~ 560 (561)
T PTZ00058 500 LVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM 560 (561)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence 6664 58999999888777776544 55678888886 244588999999999988764
No 23
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=3.4e-42 Score=333.50 Aligned_cols=308 Identities=23% Similarity=0.336 Sum_probs=240.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
.+++|||||||++|+.+|..|.+.. ++.+|||||+.+++.|. |.+.. .... ......+ ...+.+.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~e-va~g-~l~~~~i-----------~~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYE-VATG-TLSESEI-----------AIPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhh-hhcC-CCChhhe-----------eccHHHH
Confidence 4689999999999999999999985 25689999999998876 44432 1111 1111111 1234566
Q ss_pred HHHcC-cEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhc---
Q 010917 139 YKEKG-IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--- 214 (497)
Q Consensus 139 ~~~~~-v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--- 214 (497)
+++.+ +++..+ +|++||+++++|+++++..+.||+||+|+|+.+.. +.++|. .+..+.+++++++.+++..+.
T Consensus 67 ~~~~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~f 143 (405)
T COG1252 67 LRKSGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAF 143 (405)
T ss_pred hcccCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHH
Confidence 66454 999984 99999999999999998889999999999999874 444553 233456778888866655442
Q ss_pred -----cC-----CeEEEEcCCHHHHHHHHHHHhCC-------------CcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917 215 -----KA-----KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 271 (497)
Q Consensus 215 -----~~-----~~vvVvG~G~~g~e~A~~l~~~g-------------~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (497)
.. .+++|+|||++|+|+|..|+++- .+|+++++.+++++. ++++++++.++.|+++
T Consensus 144 e~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKL 222 (405)
T ss_pred HHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHC
Confidence 12 26999999999999999987542 389999999999985 8999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEeccCcCCCcchhh-cCCccc-CCCEEecCCCCC-CCCcEE
Q 010917 272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIF 347 (497)
Q Consensus 272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vv~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t-~~~~iy 347 (497)
||++++++.|++++++ .|++++|+ +|++|++||++|.+++ +++++ .+++.+ .|++.||+++++ ++|+||
T Consensus 223 GV~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IF 295 (405)
T COG1252 223 GVEVLLGTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIF 295 (405)
T ss_pred CCEEEcCCceEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeE
Confidence 9999999999999864 68888888 4999999999999998 77888 477766 589999999998 899999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCce
Q 010917 348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF 397 (497)
Q Consensus 348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~ 397 (497)
|+|||+..... ...+...+.|.+||..+|+||..... ..+..||.
T Consensus 296 a~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~-g~~l~~f~ 340 (405)
T COG1252 296 AAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLK-GKPLKPFK 340 (405)
T ss_pred EEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhc-CCCCCCCc
Confidence 99999987764 11133667899999999999975322 23344553
No 24
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.6e-41 Score=347.22 Aligned_cols=400 Identities=20% Similarity=0.288 Sum_probs=274.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCCccccCCC------------C-------CCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL------------D-------KKP 117 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~---~~~~~l~~~~l~~~------------~-------~~~ 117 (497)
+++|+|||||++|+.||..++++|. +|+|||++..-. ...+.-++.++... . ...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 77 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEAR 77 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccc
Confidence 3689999999999999999999997 899999875211 00010011111000 0 000
Q ss_pred CCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEe--cCCC--EEEECCCc--EEEeccEEeccCCCCCcCCC
Q 010917 118 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSID--IEKQ--TLITNSGK--LLKYGSLIVATGCTASRFPE 188 (497)
Q Consensus 118 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~--~v~~~~g~--~i~~d~lvlAtG~~~~~~~~ 188 (497)
.++....... .........+++++.+++++.+ ++..++ .+.+ .+.+.+|+ ++.||+||||||+.|..+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p- 155 (466)
T PRK07845 78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILP- 155 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCC-
Confidence 0000000000 0000012334566789999986 555533 3334 45555665 6999999999999987433
Q ss_pred CCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHH
Q 010917 189 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 268 (497)
Q Consensus 189 ~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l 268 (497)
.++.+.+.+++..++.+ ....+++++|||+|.+|+|+|..|+++|.+|+++++.+++++. +++++...+.+.|
T Consensus 156 ~~~~~~~~v~~~~~~~~------~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L 228 (466)
T PRK07845 156 TAEPDGERILTWRQLYD------LDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVF 228 (466)
T ss_pred CCCCCCceEEeehhhhc------ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHH
Confidence 22222334544433322 1234689999999999999999999999999999999999886 7899999999999
Q ss_pred HHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCc
Q 010917 269 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG 345 (497)
Q Consensus 269 ~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~ 345 (497)
+++||++++++++.+++..++ .+ .+.+.+|+++++|.|++++|++||+++ +++++++.+ +|+|.||++++|+.||
T Consensus 229 ~~~gV~i~~~~~v~~v~~~~~-~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~ 306 (466)
T PRK07845 229 ARRGMTVLKRSRAESVERTGD-GV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPG 306 (466)
T ss_pred HHCCcEEEcCCEEEEEEEeCC-EE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCC
Confidence 999999999999999975433 33 466778889999999999999999986 678888865 5779999999999999
Q ss_pred EEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEeecCCC--
Q 010917 346 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 421 (497)
Q Consensus 346 iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-- 421 (497)
|||+|||+..+. .+..|..||+.++.++++.... .+..+|. ..|..+ .+..+|....
T Consensus 307 IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p------~~a~vGlte~~a 367 (466)
T PRK07845 307 IYAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRP------EIATVGVSQAAI 367 (466)
T ss_pred EEEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCC------cceeecCCHHHH
Confidence 999999997532 4566999999999999964322 3344554 333211 0333443221
Q ss_pred -----c--EE-----------EEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCC
Q 010917 422 -----E--TI-----------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQAS 478 (497)
Q Consensus 422 -----~--~~-----------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~ 478 (497)
+ .. ..+. ...+.++.++ +++|+|+++++.++.++... ..+++++.+++ . ...+.||
T Consensus 368 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP 446 (466)
T PRK07845 368 DSGEVPARTVMLPLATNPRAKMSGL-RDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYP 446 (466)
T ss_pred HhCCCceEEEEEecccCchhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCC
Confidence 0 00 0111 1346777664 58999999888777765544 45678888886 3 3457899
Q ss_pred cHHHHHHHHHccCCc
Q 010917 479 SVEEALEIARAALPV 493 (497)
Q Consensus 479 ~~~~~~~~~~~~~~~ 493 (497)
|++|+++.|++.+..
T Consensus 447 t~~e~~~~~~~~~~~ 461 (466)
T PRK07845 447 SLSGSITEAARRLMA 461 (466)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999876543
No 25
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=3.7e-41 Score=345.47 Aligned_cols=398 Identities=21% Similarity=0.266 Sum_probs=271.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-Ccccc---------CCC------CCCCCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYL---------FPL------DKKPARLPG 122 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l---------~~~------~~~~~~~~~ 122 (497)
+||+||||||||++||..|+++|+ +|+|||+++... .++-.. ++.++ ... .....++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 589999999999999999999998 899999875211 000000 00000 000 000000000
Q ss_pred Cccc---cCCCC-CCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCc-EEEeccEEeccCCCCCcCCCCCCCCCCcE
Q 010917 123 FHTC---VGSGG-ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGV 197 (497)
Q Consensus 123 ~~~~---~~~~~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lvlAtG~~~~~~~~~~g~~~~gv 197 (497)
.... ..... .......+++.+++++.+ ++..+ +.+++.+.++. .+.||+||||||+.|. .|.++|.+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~ 153 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGY 153 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCce
Confidence 0000 00000 011334567789999876 44433 45778887754 6899999999999987 455666544443
Q ss_pred EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEc
Q 010917 198 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 277 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~ 277 (497)
.+. +.+......+++++|||+|.+|+|+|..|+++|.+|+++++.+++++. +++++...+++.+++.||++++
T Consensus 154 ~~~------~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~ 226 (463)
T TIGR02053 154 LTS------EEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVT 226 (463)
T ss_pred ECc------hhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEEc
Confidence 332 222222234689999999999999999999999999999999999875 7899999999999999999999
Q ss_pred CCeEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEeccCcCCCc-c-hhhcCCccc-CCCEEecCCCCCCCCcEEEecc
Q 010917 278 GASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 351 (497)
Q Consensus 278 ~~~v~~i~~~~~~~v~~v~~~---~g~~i~~D~vv~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD 351 (497)
+++|++++.++++. .+.+. +++++++|.||+|+|++|+++ + ++..+++.+ +|+|.||+++||+.|+|||+||
T Consensus 227 ~~~V~~i~~~~~~~--~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD 304 (463)
T TIGR02053 227 SAQVKAVSVRGGGK--IITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGD 304 (463)
T ss_pred CcEEEEEEEcCCEE--EEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeee
Confidence 99999998643322 23332 236799999999999999998 4 677788765 5779999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCCCcceeeEEeecCCCc-------
Q 010917 352 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------- 422 (497)
Q Consensus 352 ~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~------- 422 (497)
|+..+. .+..|..||+.+|.||++.... ++..+|+ ...++.+ +..+|....+
T Consensus 305 ~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~~ 365 (463)
T TIGR02053 305 VTGGLQ----------LEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPA-------VASVGLTEAEAQKAGIE 365 (463)
T ss_pred cCCCcc----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCc-------eEEEeCCHHHHHhcCCC
Confidence 998532 4556999999999999864232 2334553 2222221 4455543210
Q ss_pred E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHH
Q 010917 423 T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE 485 (497)
Q Consensus 423 ~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 485 (497)
. ...- +....+.++.++ +++|+|+++++.++.++... ..+++.+.+++ . .....|||++|.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~ 445 (463)
T TIGR02053 366 CDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLK 445 (463)
T ss_pred eEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHH
Confidence 0 0000 011346777664 58999999988887776655 45678888876 3 33468999999999
Q ss_pred HHHccCCc
Q 010917 486 IARAALPV 493 (497)
Q Consensus 486 ~~~~~~~~ 493 (497)
.|++.+..
T Consensus 446 ~a~~~~~~ 453 (463)
T TIGR02053 446 LAAQTFYR 453 (463)
T ss_pred HHHHHhhc
Confidence 99987643
No 26
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.8e-41 Score=346.22 Aligned_cols=397 Identities=23% Similarity=0.299 Sum_probs=262.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-CccccCCCC-----C-CCCCCCCCccccCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYLFPLD-----K-KPARLPGFHTCVGSG 130 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l~~~~-----~-~~~~~~~~~~~~~~~ 130 (497)
++||+||||||||++||..|+++|. +|+|||++.... ...... ++.++.... . ....+ +.......+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~-gi~~~~~~~ 79 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTF-GISGEVTFD 79 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhc-CCCcCcccC
Confidence 5899999999999999999999998 899999863211 000000 111110000 0 00000 000000000
Q ss_pred C--------------CCCCHhHHHHcCcEEEeCCcEEEEecCCCEE--EECCC--cEEEeccEEeccCCCCCcCCCCCCC
Q 010917 131 G--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSG--KLLKYGSLIVATGCTASRFPEKIGG 192 (497)
Q Consensus 131 ~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~g--~~i~~d~lvlAtG~~~~~~~~~~g~ 192 (497)
+ .......++..+|+.+.+ +..-+ +.+++ ...+| .++.||+||||||+.|..+ |+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~--~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~ 153 (466)
T PRK07818 80 YGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFT--DANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGT 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEc--CCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCC
Confidence 0 000011122346666553 22222 33444 33444 3689999999999998743 343
Q ss_pred CC-CcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917 193 YL-PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 271 (497)
Q Consensus 193 ~~-~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (497)
+. ..+.+. .+ .+ .....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++...+.+.|+++
T Consensus 154 ~~~~~v~~~---~~--~~-~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~ 226 (466)
T PRK07818 154 SLSENVVTY---EE--QI-LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKL 226 (466)
T ss_pred CCCCcEEch---HH--Hh-ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHC
Confidence 22 223322 11 11 11235789999999999999999999999999999999999986 7899999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCC
Q 010917 272 GVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 344 (497)
Q Consensus 272 GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 344 (497)
||+++++++|++++.. ++.+ .+.+. +| +++++|.|++|+|++||+++ +++.++..+ +|+|.||+++||+.|
T Consensus 227 gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p 304 (466)
T PRK07818 227 GVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVP 304 (466)
T ss_pred CCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCC
Confidence 9999999999999854 2322 33333 56 47999999999999999886 578888764 577999999999999
Q ss_pred cEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC---CCCCCCceeeeccccCCCCcceeeEEeecCCC
Q 010917 345 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 421 (497)
Q Consensus 345 ~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~ 421 (497)
+|||+|||+..+. .+..|..||+.+|.||++.... .+..+|.. .|..+ .+.++|....
T Consensus 305 ~IyAiGD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~ 365 (466)
T PRK07818 305 HIYAIGDVTAKLQ----------LAHVAEAQGVVAAETIAGAETLELGDYRMMPRA---TFCQP------QVASFGLTEE 365 (466)
T ss_pred CEEEEeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCCccCccCCCCeE---EECCC------CeEEEeCCHH
Confidence 9999999987432 4566999999999999964322 44556652 22211 1444554322
Q ss_pred c-------E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCC
Q 010917 422 E-------T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQA 477 (497)
Q Consensus 422 ~-------~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~ 477 (497)
+ . ...- +-...+.++.++ +++|+|+++++.++.++... ..+++.+.+++ . ..++.|
T Consensus 366 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 445 (466)
T PRK07818 366 QAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTH 445 (466)
T ss_pred HHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCC
Confidence 1 0 0000 011346677664 48999999878777776554 45678888886 3 345789
Q ss_pred CcHHHHHHHHHccCCcc
Q 010917 478 SSVEEALEIARAALPVE 494 (497)
Q Consensus 478 ~~~~~~~~~~~~~~~~~ 494 (497)
||++|+++.|++.+..+
T Consensus 446 Pt~~e~~~~~~~~~~~~ 462 (466)
T PRK07818 446 PTLSEALKEAFHGLAGH 462 (466)
T ss_pred CchHHHHHHHHHHhhcC
Confidence 99999999999877654
No 27
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.1e-41 Score=350.91 Aligned_cols=393 Identities=20% Similarity=0.267 Sum_probs=272.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC------CC-CCCCCCCCCcc-----ccC---------------
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AY-APYERPALTKG-----YLF--------------- 111 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~------~~-~~~~~~~l~~~-----~l~--------------- 111 (497)
..+||+||||||||+.||..++++|. +|+|||+. +. ..+....+..| .+.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~ 154 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGF 154 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence 35899999999999999999999998 89999962 10 01111111111 000
Q ss_pred CCC---CCCCCCCCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCc
Q 010917 112 PLD---KKPARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 112 ~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
... ....++...... .-..+...+...+++.|++++.+ ++..+++ +++.+ +|+.+.||+||||||++|.
T Consensus 155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~- 229 (558)
T PLN02546 155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPF- 229 (558)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCC-
Confidence 000 000011000000 00000112334456679999985 6666665 45665 5678999999999999987
Q ss_pred CCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH
Q 010917 186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265 (497)
Q Consensus 186 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~ 265 (497)
.|.++| +... .+++.+......+++++|||+|++|+|+|..|.++|.+|+++++.+.+++. +++++...++
T Consensus 230 ~P~IpG-----~~~v---~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~ 300 (558)
T PLN02546 230 IPDIPG-----IEHA---IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRDFVA 300 (558)
T ss_pred CCCCCC-----hhhc---cCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHHHHH
Confidence 455444 2222 234444444456899999999999999999999999999999999988874 8999999999
Q ss_pred HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCC
Q 010917 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTR 342 (497)
Q Consensus 266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~ 342 (497)
+.|+++||++++++++.+++..+++.+ .+.+.+++.+.+|.|++++|++||+++ +++++++.+ +|+|.||+++||+
T Consensus 301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts 379 (558)
T PLN02546 301 EQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS 379 (558)
T ss_pred HHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeC
Confidence 999999999999999999986444433 455566655669999999999999986 578888875 5779999999999
Q ss_pred CCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCC
Q 010917 343 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV 420 (497)
Q Consensus 343 ~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~ 420 (497)
+|+|||+|||+..+. .+..|..||+.+|.||++... ..|..+|+ ..|..+- +..+|...
T Consensus 380 ~p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGlte 440 (558)
T PLN02546 380 VPSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGLTE 440 (558)
T ss_pred CCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccCCH
Confidence 999999999997532 455699999999999997442 24556775 3554421 22333322
Q ss_pred Cc-------E-E-----------EEccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcC
Q 010917 421 GE-------T-I-----------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQ 476 (497)
Q Consensus 421 ~~-------~-~-----------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~ 476 (497)
.+ + + ..+.....+.++.++ +++|+|+++++.++.++... ..+++++.+++ . ..++.
T Consensus 441 ~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~ 520 (558)
T PLN02546 441 EQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGI 520 (558)
T ss_pred HHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccC
Confidence 10 0 0 011112346777664 58999999888877776544 55679998887 3 44589
Q ss_pred CCcHHHHHHHHH
Q 010917 477 ASSVEEALEIAR 488 (497)
Q Consensus 477 ~~~~~~~~~~~~ 488 (497)
|||+.|.+..++
T Consensus 521 hPT~~E~~~~~~ 532 (558)
T PLN02546 521 HPTAAEEFVTMR 532 (558)
T ss_pred CCChHHHHHHHh
Confidence 999999998886
No 28
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=6e-40 Score=333.56 Aligned_cols=392 Identities=20% Similarity=0.274 Sum_probs=267.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCC-Ccccc--------------CCC--CCCCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPAL-TKGYL--------------FPL--DKKPARLP 121 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~l--------------~~~--~~~~~~~~ 121 (497)
+|++||||||+|.+||.. +.|. +|+|||++..-. .++-.. ++.++ +.. .....++.
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP 76 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence 799999999999998865 4576 899999864211 111111 11100 000 00000110
Q ss_pred CCcccc---CCCCCC-CCHhH-HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917 122 GFHTCV---GSGGER-QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 196 (497)
Q Consensus 122 ~~~~~~---~~~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~g 196 (497)
...... ...+.. ....+ ++..|++++.+. ..-+ +.++|.+.+|+.+.||+||||||++|. .|.+++.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~~ 152 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVR 152 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCcc
Confidence 000000 000001 12233 567789998863 3333 578898888888999999999999997 45555533222
Q ss_pred EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917 197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276 (497)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~ 276 (497)
+. +..+... ....+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++.+.+.+.+ +.||+++
T Consensus 153 ~~---~~~~~~~---l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~~v~i~ 224 (451)
T PRK07846 153 YH---TSDTIMR---LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SKRWDVR 224 (451)
T ss_pred EE---chHHHhh---hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hcCeEEE
Confidence 22 2223222 2235789999999999999999999999999999999998864 7889888877654 5789999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch--hhcCCccc-CCCEEecCCCCCCCCcEEEecccc
Q 010917 277 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 353 (497)
Q Consensus 277 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~ 353 (497)
+++++++++.. ++.+ .+.+.+|+++++|.|++|+|++||++++ ++++++.+ +|++.||+++||+.|||||+|||+
T Consensus 225 ~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~ 302 (451)
T PRK07846 225 LGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVS 302 (451)
T ss_pred eCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecC
Confidence 99999999854 3333 4667788899999999999999999884 67888874 577999999999999999999999
Q ss_pred ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E
Q 010917 354 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T 423 (497)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~ 423 (497)
..+. ....|..||+.+++||++... ..+..+|+. .|..+ .+..+|....+ +
T Consensus 303 ~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~---if~~p------~ia~vGlte~~a~~~g~~~ 363 (451)
T PRK07846 303 SPYQ----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAA---VFTHP------QIASVGLTENEARAAGLDI 363 (451)
T ss_pred CCcc----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeE---EECCC------CcEeEeCCHHHHHhcCCCE
Confidence 7542 334589999999999986422 245566764 23211 13344543221 0
Q ss_pred E-E------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-hhh--hcCCCcHHHHH
Q 010917 424 I-E------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK--LQQASSVEEAL 484 (497)
Q Consensus 424 ~-~------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~~ 484 (497)
. . .++ ...+.++.++ +++|+|+++++.++.++... ..+++++.+++ ... ...|||++|++
T Consensus 364 ~~~~~~~~~~~~~~~~~~-~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~ 442 (451)
T PRK07846 364 TVKVQNYGDVAYGWAMED-TTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVV 442 (451)
T ss_pred EEEEEecCcchhhhhCCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHH
Confidence 0 0 011 1346677664 48999999878777765544 55678998886 443 35899999999
Q ss_pred HHHHccC
Q 010917 485 EIARAAL 491 (497)
Q Consensus 485 ~~~~~~~ 491 (497)
+.|++.+
T Consensus 443 ~~a~~~~ 449 (451)
T PRK07846 443 ENALLGL 449 (451)
T ss_pred HHHHHhc
Confidence 9998764
No 29
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-40 Score=339.29 Aligned_cols=393 Identities=17% Similarity=0.207 Sum_probs=262.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CC---CCCCCCccccCCCCCCCCCCCCCcccc---CCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PY---ERPALTKGYLFPLDKKPARLPGFHTCV---GSGGE 132 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~-~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~---~~~~~ 132 (497)
.+||+||||||||++||..|+++|+ +|+|||+++.. .. .....+...+........++....... .....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLR 79 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999997 89999998632 11 000011101100000000110000000 00000
Q ss_pred CCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC---CcEEEeccEEeccCCCCCcCCCCCCC-CCCcEEEecCHHHHHH
Q 010917 133 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADA 208 (497)
Q Consensus 133 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---g~~i~~d~lvlAtG~~~~~~~~~~g~-~~~gv~~~~~~~~~~~ 208 (497)
....+.+.+.+|+++.++ +.. .+.+++.+.. ...+.||+||||||++|+. |.++|. +.+++++ +..
T Consensus 80 ~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~------~~~ 149 (438)
T PRK07251 80 GKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYD------STG 149 (438)
T ss_pred HHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEc------hHH
Confidence 112244567789988763 333 3456665543 2468999999999999874 555563 2233333 333
Q ss_pred HHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917 209 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 288 (497)
Q Consensus 209 ~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~ 288 (497)
+......+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. .++++...+.+.+++.||++++++++++++..
T Consensus 150 ~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~- 227 (438)
T PRK07251 150 IQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKND- 227 (438)
T ss_pred HhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-
Confidence 3333345789999999999999999999999999999999999876 68889999999999999999999999999853
Q ss_pred CCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917 289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 365 (497)
Q Consensus 289 ~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~ 365 (497)
++.+ .+. .+++++++|.||+|+|.+|+.+. ++..++..+ +|++.||+++||+.|||||+|||+..+.
T Consensus 228 ~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~-------- 297 (438)
T PRK07251 228 GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ-------- 297 (438)
T ss_pred CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--------
Confidence 3332 233 45678999999999999999876 345666654 5779999999999999999999997543
Q ss_pred cccHHHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E----EEEc----
Q 010917 366 VEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T----IEIG---- 427 (497)
Q Consensus 366 ~~~~~~A~~~g~~~a~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~----~~~~---- 427 (497)
....|..+++.++.++.+... ..+..+|+. ..++.. +..+|....+ . ....
T Consensus 298 --~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~ 366 (438)
T PRK07251 298 --FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAMPR 366 (438)
T ss_pred --cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcchh
Confidence 223477889999998886432 123345543 222221 3344433210 0 0000
Q ss_pred ----cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHHHHHHH
Q 010917 428 ----NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR 488 (497)
Q Consensus 428 ----~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 488 (497)
.....+.+++++ +++|+|+++++.++.++... ..+++++.+++ . ..++.|||++|+++.+-
T Consensus 367 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 367 AHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred hhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 001236677664 48999999888777776654 55678888876 2 34578999999998763
No 30
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.4e-40 Score=347.76 Aligned_cols=399 Identities=19% Similarity=0.257 Sum_probs=268.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCCCC-ccccCC------CCCCCCCCCCCcccc-C
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERPALT-KGYLFP------LDKKPARLPGFHTCV-G 128 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~l~~------~~~~~~~~~~~~~~~-~ 128 (497)
..+||+||||||||++||..|++.|. +|+|||++..-. ..+...+ +.++.. ......+ .+..... .
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~-~g~~~~~~~ 172 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFD-GGIAATVPT 172 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCcceeeccccCccccHHHHHHHHHHHHHhccccc-CCccCCCCc
Confidence 46899999999999999999999997 899999873110 0010011 100000 0000000 0000000 0
Q ss_pred CCC---C------------CCCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCCC
Q 010917 129 SGG---E------------RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI 190 (497)
Q Consensus 129 ~~~---~------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~ 190 (497)
.++ . ......+++. +|+++.+ ++..++.....+.+.+|. .+.||+||||||+.|. .|.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~ 250 (561)
T PRK13748 173 IDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPIP 250 (561)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCCC
Confidence 000 0 0011223444 7888876 677777665566666663 6999999999999987 45555
Q ss_pred CCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH
Q 010917 191 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 270 (497)
Q Consensus 191 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (497)
|.+... .+. ..........+++++|||+|++|+|+|..|.++|.+|+++++. .+++. +++++...+++.|++
T Consensus 251 g~~~~~--~~~----~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~ 322 (561)
T PRK13748 251 GLKETP--YWT----STEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFRA 322 (561)
T ss_pred CCCccc--eEc----cHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHHH
Confidence 532211 221 1122222245789999999999999999999999999999985 45554 799999999999999
Q ss_pred CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEE
Q 010917 271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF 347 (497)
Q Consensus 271 ~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iy 347 (497)
.||++++++.+++++.. ++.+ .+.+.++ ++++|.|++|+|++||+++ +++++++.+ +|+|.||+++||+.||||
T Consensus 323 ~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~Iy 399 (561)
T PRK13748 323 EGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIY 399 (561)
T ss_pred CCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEE
Confidence 99999999999999754 3332 3455554 6999999999999999986 577888875 577999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCC-----
Q 010917 348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----- 421 (497)
Q Consensus 348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~----- 421 (497)
|+|||+..+. ....|..+|+.+|.||++... .++...|+ ...++.. +..+|....
T Consensus 400 A~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~ 460 (561)
T PRK13748 400 AAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQ-------VATVGYSEAEAHHD 460 (561)
T ss_pred EeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCC-------ceeeeCCHHHHHHc
Confidence 9999997653 334588899999999986432 23344554 2222222 344554321
Q ss_pred --cE-EE-----------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHH
Q 010917 422 --ET-IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 482 (497)
Q Consensus 422 --~~-~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~ 482 (497)
.. .. .+.....+.+++++ +++|+|+++++..+.++... ..+++.+.+++ . ..++.|||++|
T Consensus 461 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 540 (561)
T PRK13748 461 GIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVE 540 (561)
T ss_pred CCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHH
Confidence 00 00 01112447777775 58999999877777665544 55678888886 3 33578999999
Q ss_pred HHHHHHccCCc
Q 010917 483 ALEIARAALPV 493 (497)
Q Consensus 483 ~~~~~~~~~~~ 493 (497)
+++.|++.+..
T Consensus 541 ~~~~~~~~~~~ 551 (561)
T PRK13748 541 GLKLAAQTFNK 551 (561)
T ss_pred HHHHHHHHhhc
Confidence 99999976543
No 31
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.3e-40 Score=339.46 Aligned_cols=394 Identities=18% Similarity=0.250 Sum_probs=264.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCC--------CCCC---CCCCCCC-ccccCCC-----CCC----
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKE--------AYAP---YERPALT-KGYLFPL-----DKK---- 116 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~--------~~~~---~~~~~l~-~~~l~~~-----~~~---- 116 (497)
..+||+||||||+|..||..+++. |. +|+|||++ ..+. .++-..+ +.++... ...
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 458999999999999999999997 76 89999974 1111 0111111 1111000 000
Q ss_pred ---------CCCCCCCccccC---CCCCCCCHhHHHH-cCcEEEeCCcEEEEecCCCEEEECC--------CcEEEeccE
Q 010917 117 ---------PARLPGFHTCVG---SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSL 175 (497)
Q Consensus 117 ---------~~~~~~~~~~~~---~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------g~~i~~d~l 175 (497)
..++........ ..+.......+++ .|++++.+. .. ..+.++|.+.+ .+.+.||+|
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a~--f~~~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-GA--LEDKNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-EE--EccCCEEEEeeccCCCCCcceEEECCEE
Confidence 000000000000 0000011122444 389998863 33 33456665531 247999999
Q ss_pred EeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcch
Q 010917 176 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL 252 (497)
Q Consensus 176 vlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~ 252 (497)
|||||+.|. .|.++|.+ .+ .+..+ +......+++++|||+|++|+|+|..+..+ |.+||++++.++++
T Consensus 156 IIATGs~p~-~p~i~G~~--~~---~~~~~---~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 156 LLATGSWPQ-MLGIPGIE--HC---ISSNE---AFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred EEecCCCCC-CCCCCChh--he---echhh---hhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 999999986 45444421 12 22222 222224579999999999999999877655 99999999999998
Q ss_pred hhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-
Q 010917 253 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS- 329 (497)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~- 329 (497)
+. +++++.+.+.+.|+++||++++++.+++++..+++. ..+.+.+|+++++|.|++++|++|++++ +++++++.+
T Consensus 227 ~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~ 304 (486)
T TIGR01423 227 RG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTK 304 (486)
T ss_pred cc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECC
Confidence 74 899999999999999999999999999998643332 3566778889999999999999999986 467888775
Q ss_pred CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccccCCC
Q 010917 330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGS 407 (497)
Q Consensus 330 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~--~~~~~p~~~~~~~~~~g~ 407 (497)
+|+|.||+++||+.|||||+|||+..+. ....|..||+.++.||++.... .+..+|+ ..|..+
T Consensus 305 ~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~p-- 369 (486)
T TIGR01423 305 KGAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIP-- 369 (486)
T ss_pred CCCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCC--
Confidence 5779999999999999999999987542 3445899999999999974332 3445664 334332
Q ss_pred CcceeeEEeecCCCc-------EE-E-----------EccC-CCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHh
Q 010917 408 PRKVWWQFFGDNVGE-------TI-E-----------IGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLAR 464 (497)
Q Consensus 408 ~~~~~~~~~g~~~~~-------~~-~-----------~~~~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~ 464 (497)
.+..+|....+ +. . .+.. ...+.++.++ +++|+|+++++.++.++... ..+++
T Consensus 370 ----eia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~ 445 (486)
T TIGR01423 370 ----PIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLK 445 (486)
T ss_pred ----ceEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 13344433210 00 0 0111 1246677664 48999999878777776544 55678
Q ss_pred CCCCCC-h-hhhcCCCcHHHHHHHHH
Q 010917 465 SQPFVD-K-AKLQQASSVEEALEIAR 488 (497)
Q Consensus 465 ~~~~~~-~-~~~~~~~~~~~~~~~~~ 488 (497)
.+.+++ . ..++.|||++|++..+.
T Consensus 446 ~~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 446 LNAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred cCCCHHHHhhcccCCCCcHHHHHhhc
Confidence 888886 3 34589999999999986
No 32
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-39 Score=339.27 Aligned_cols=319 Identities=19% Similarity=0.267 Sum_probs=224.6
Q ss_pred cEEEeCCcEEEEecCCCEEEE-CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEE
Q 010917 144 IEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 222 (497)
Q Consensus 144 v~~~~~~~v~~i~~~~~~v~~-~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv 222 (497)
+++..+. ..-+ +.+++.+ .+++++.||+||||||+.|.. |..++.+.+++++. .+...+ ...+++++||
T Consensus 249 v~vi~G~-a~f~--~~~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l---~~lpk~VvIV 318 (659)
T PTZ00153 249 VQVIYER-GHIV--DKNTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKL---EGLQNYMGIV 318 (659)
T ss_pred eEEEEeE-EEEe--cCCeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhh---hhcCCceEEE
Confidence 5666542 2212 3445544 356789999999999999874 44333333345443 333332 2347899999
Q ss_pred cCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHH-HHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC--
Q 010917 223 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED-- 299 (497)
Q Consensus 223 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l-~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-- 299 (497)
|+|++|+|+|..|.++|.+||++++.+++++. +++++...+.+.+ +++||++++++.|++++..+++....+.+.+
T Consensus 319 GgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~ 397 (659)
T PTZ00153 319 GMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQ 397 (659)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccc
Confidence 99999999999999999999999999999985 8999999988875 6799999999999999865333322343321
Q ss_pred -----C--------cEEEcCEEEEeccCcCCCcc--hhhcCCcccCCCEEecCCCCCC------CCcEEEeccccccCCc
Q 010917 300 -----G--------STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLK 358 (497)
Q Consensus 300 -----g--------~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~------~~~iya~GD~~~~~~~ 358 (497)
+ +++++|.|++|+|++||++. ++.+++..++|+|.||+++||+ +|+|||+|||+..+.
T Consensus 398 ~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~- 476 (659)
T PTZ00153 398 TGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM- 476 (659)
T ss_pred cccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc-
Confidence 1 37999999999999999987 4677887777889999999997 699999999986432
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHhcCC------------C--CCCCCCCceeeeccccCCCCcceeeEEeecCCCc--
Q 010917 359 MYDRTARVEHVDHARQSAQHCIKALLSAQ------------T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-- 422 (497)
Q Consensus 359 ~~g~~~~~~~~~~A~~~g~~~a~~i~~~~------------~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-- 422 (497)
....|..||+.++++|.+.. . ..|..+|.. .|..+ .+.++|....+
T Consensus 477 ---------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~---ift~P------eiA~VGlTE~eA~ 538 (659)
T PTZ00153 477 ---------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSV---CYTTP------ELAFIGLTEKEAK 538 (659)
T ss_pred ---------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEE---EECcC------ceEEeeCCHHHHH
Confidence 44569999999999998642 1 124455541 11111 02233322110
Q ss_pred --------------------EEEEcc---------------------CCCcEEEEEEE--CCEEEEEEeecCChHHhhHH
Q 010917 423 --------------------TIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL 459 (497)
Q Consensus 423 --------------------~~~~~~---------------------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~ 459 (497)
....+. ....+.++.++ +++|+|+++++.++.++...
T Consensus 539 ~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~ 618 (659)
T PTZ00153 539 ELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHE 618 (659)
T ss_pred hcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHH
Confidence 000000 02346777664 58999999888888776655
Q ss_pred H-HHHhCCCCCC--hhhhcCCCcHHHHHHHHHccCC
Q 010917 460 P-TLARSQPFVD--KAKLQQASSVEEALEIARAALP 492 (497)
Q Consensus 460 ~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 492 (497)
- .+++.+.+++ ...++.|||++|.+..|++++.
T Consensus 619 ~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~ 654 (659)
T PTZ00153 619 GVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIA 654 (659)
T ss_pred HHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHH
Confidence 4 5578888887 3445889999999999998865
No 33
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=5.9e-41 Score=356.69 Aligned_cols=345 Identities=21% Similarity=0.251 Sum_probs=247.4
Q ss_pred EeecccccccCcccccCCCCcccccC--CCCchhhhccccccc-------c--cc-cCCCCCcEEEEcCchHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA-------Y--SS-FANENREFVIVGGGNAAGYAARTF 79 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~--~~-~~~~~~~VvIIGgG~AGl~aA~~L 79 (497)
..+||||.+||++|+.+|..+|.|.. .+++|..++|+..+. . .+ ...+.++|+||||||||++||..|
T Consensus 479 ~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~L 558 (1019)
T PRK09853 479 YQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFL 558 (1019)
T ss_pred HHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHH
Confidence 46899999999999999999999975 899999998887542 1 11 134578999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC
Q 010917 80 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 159 (497)
Q Consensus 80 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~ 159 (497)
+++|+ +|+|+|+++..... +. +..+....+.+ ......+++.+.|+++++++.+ .++.
T Consensus 559 ar~G~---~VtV~Ek~~~~GG~---lr--~~IP~~Rlp~e-----------vL~~die~l~~~GVe~~~gt~V-di~l-- 616 (1019)
T PRK09853 559 ARAGH---PVTVFEREENAGGV---VK--NIIPQFRIPAE-----------LIQHDIEFVKAHGVKFEFGCSP-DLTV-- 616 (1019)
T ss_pred HHcCC---eEEEEecccccCcc---ee--eecccccccHH-----------HHHHHHHHHHHcCCEEEeCcee-EEEh--
Confidence 99998 89999998653211 00 11111111110 0123346778889999998766 2322
Q ss_pred CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecC-HHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC
Q 010917 160 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 238 (497)
Q Consensus 160 ~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~-~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~ 238 (497)
++.....||+||||||+.+...+.++|.+ +++....+ +.+..........+++|+|||||++|+|+|..+.+.
T Consensus 617 -----e~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~Rl 690 (1019)
T PRK09853 617 -----EQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRV 690 (1019)
T ss_pred -----hhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhc
Confidence 23334579999999999854434445543 34443211 122212223345689999999999999999998887
Q ss_pred -C-CcEEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE----------------EEEEeCC
Q 010917 239 -K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----------------AAVKLED 299 (497)
Q Consensus 239 -g-~~Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v----------------~~v~~~~ 299 (497)
| .+|+++.+++. .++. ....+.+.+ +.||+++.+..+.++.. ++++ ..+...+
T Consensus 691 gGakeVTLVyRr~~~~MPA-----~~eEle~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~ 762 (1019)
T PRK09853 691 PGVEKVTVVYRRTKQEMPA-----WREEYEEAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGE 762 (1019)
T ss_pred CCCceEEEEEccCcccccc-----cHHHHHHHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCC
Confidence 4 48999998763 3332 223344433 57999999998988863 2322 1222334
Q ss_pred CcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917 300 GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 378 (497)
Q Consensus 300 g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 378 (497)
++++++|.||+|+|.+|+.++++..|+..+ +|++.||++++|+.|+|||+|||+..+. .+..|+.+|+.
T Consensus 763 ~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qGr~ 832 (1019)
T PRK09853 763 TVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADARR 832 (1019)
T ss_pred eEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHHHH
Confidence 468999999999999999999998888765 5789999999999999999999986543 45679999999
Q ss_pred HHHHHhcCCCCCCCCCCceeeecc
Q 010917 379 CIKALLSAQTHTYDYLPYFYSRVF 402 (497)
Q Consensus 379 ~a~~i~~~~~~~~~~~p~~~~~~~ 402 (497)
||.+|++.....+...|++|++.+
T Consensus 833 AA~nI~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 833 AADAILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred HHHHHhhhcCCCcccccccccccc
Confidence 999999766567778888887654
No 34
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.1e-39 Score=334.76 Aligned_cols=399 Identities=18% Similarity=0.209 Sum_probs=264.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCC-CccccC--------CCCC---CCCCCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPAL-TKGYLF--------PLDK---KPARLPGF 123 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~l~--------~~~~---~~~~~~~~ 123 (497)
.++||+||||||||+++|..|++.|. +|++||+++...- ++-.. ++.++. .... .....+.+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 91 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI 91 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence 45899999999999999999999987 8999998743221 00000 010000 0000 00000000
Q ss_pred c--ccc------CCCCC-CCCHhHHHHc-CcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCCCC
Q 010917 124 H--TCV------GSGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 191 (497)
Q Consensus 124 ~--~~~------~~~~~-~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~g 191 (497)
. ... -.... ......++.. +++++.+ +..-++.....+.+.+|+ ++.||+||||||+.|. .|.++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~G 169 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIPG 169 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCCC
Confidence 0 000 00000 0112233333 7888875 344455444455556663 6899999999999987 455555
Q ss_pred CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917 192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 271 (497)
Q Consensus 192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (497)
.....+ ... .+.+ .....+++++|||+|++|+|+|..|.++|.+|+++++. .+++. +++++.+.+++.+++.
T Consensus 170 ~~~~~~--~~~---~~~l-~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~~ 241 (479)
T PRK14727 170 LMDTPY--WTS---TEAL-FSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEKE 241 (479)
T ss_pred cCccce--ecc---hHHh-ccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHhC
Confidence 322111 111 1122 11234689999999999999999999999999999875 56654 7899999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEE
Q 010917 272 GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA 348 (497)
Q Consensus 272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya 348 (497)
||++++++++++++..++ .+ .+.+.++ ++++|.||+|+|+.||+.+ ++.++++.+ +|+|.||+++||+.|+|||
T Consensus 242 GV~i~~~~~V~~i~~~~~-~~-~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA 318 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDN-GF-VLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYA 318 (479)
T ss_pred CCEEEcCcEEEEEEEeCC-EE-EEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEE
Confidence 999999999999975433 22 3455555 5999999999999999886 567788765 5779999999999999999
Q ss_pred eccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCCc-----
Q 010917 349 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE----- 422 (497)
Q Consensus 349 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~----- 422 (497)
+|||+..+. ....|..+|+.+|.+|++... .++...|+. ..++.. +..+|....+
T Consensus 319 ~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g 379 (479)
T PRK14727 319 AGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQ-------VATVGLSEAKAHLSG 379 (479)
T ss_pred eeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCc-------eeeeeCCHHHHHHcC
Confidence 999997643 334588999999999996432 234445542 222221 4445543221
Q ss_pred --E---EE---------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-hhhcCCCcHHHH
Q 010917 423 --T---IE---------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA 483 (497)
Q Consensus 423 --~---~~---------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~ 483 (497)
. .. .+.....+.+++++ +++|+|+++++..+.++... ..+++.+.+++ . ...+.|||++|+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~ 459 (479)
T PRK14727 380 IETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEG 459 (479)
T ss_pred CceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHH
Confidence 0 00 01112346777764 58999999877777766544 45678888886 3 335889999999
Q ss_pred HHHHHccCC
Q 010917 484 LEIARAALP 492 (497)
Q Consensus 484 ~~~~~~~~~ 492 (497)
++.|++.+.
T Consensus 460 ~~~~~~~~~ 468 (479)
T PRK14727 460 LKLCAQTFR 468 (479)
T ss_pred HHHHHHhhh
Confidence 999997543
No 35
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=334.41 Aligned_cols=308 Identities=20% Similarity=0.273 Sum_probs=235.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 137 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (497)
..+++|||||||+||+.+|..|.+.++ +|||||+++++.|. |.++. +...... ...+ ...+..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~~~-----------~~~~~~ 70 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQ-TTTGTLE-FRSI-----------CEPVRP 70 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHH-hcccCCC-hHHh-----------HHHHHH
Confidence 456799999999999999999975444 89999999988774 44332 2221111 1111 112344
Q ss_pred HHHHcCcEEEeCCcEEEEecCCCEEEE----------CCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH
Q 010917 138 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD 207 (497)
Q Consensus 138 ~~~~~~v~~~~~~~v~~i~~~~~~v~~----------~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~ 207 (497)
.+...+++++. .+|+.||++++.+.+ +++.++.||+||||||+.+.. +.+||.. +.++.++++.++.
T Consensus 71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~-~~ipG~~-e~~~~~~~~~~a~ 147 (424)
T PTZ00318 71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT-FNIPGVE-ERAFFLKEVNHAR 147 (424)
T ss_pred HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCC-CCCCCHH-HcCCCCCCHHHHH
Confidence 45667888876 599999999999888 466789999999999999863 5556642 2445667777766
Q ss_pred HHHHhhc-----------------cCCeEEEEcCCHHHHHHHHHHHh--------------CCCcEEEEecCCcchhhcc
Q 010917 208 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLF 256 (497)
Q Consensus 208 ~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~--------------~g~~Vtlv~~~~~~~~~~~ 256 (497)
.+.+.+. ..++++|||+|++|+|+|..|++ .+.+|+++++.+++++. +
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~ 226 (424)
T PTZ00318 148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-F 226 (424)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-C
Confidence 6544321 12489999999999999999976 36889999999999874 8
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEe
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQV 335 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~v 335 (497)
++.+.+.+++.|+++||+++++++|++++.+ .+.+++|+++++|.+|+++|.+|+ +++++++++.+ +|+|.|
T Consensus 227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~V 299 (424)
T PTZ00318 227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISV 299 (424)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEe
Confidence 9999999999999999999999999999742 467889999999999999999998 68888888765 689999
Q ss_pred cCCCC-CCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCcee
Q 010917 336 DGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY 398 (497)
Q Consensus 336 d~~~~-t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~ 398 (497)
|+++| +++|||||+|||+..+.... ...+..|.+||+.+|+||.+.........||.|
T Consensus 300 d~~l~~~~~~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 300 DDHLRVKPIPNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred CCCcccCCCCCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 99999 59999999999998754221 225677999999999999753222113566654
No 36
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.3e-39 Score=332.95 Aligned_cols=397 Identities=18% Similarity=0.220 Sum_probs=265.4
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCCccccC--------------CC----CCCCCCC
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF--------------PL----DKKPARL 120 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~-~~l~~~~l~--------------~~----~~~~~~~ 120 (497)
+|+||||||||++||..|++.|. +|+|||++.... ..+ +--++.++. .. .....++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 89999999999999999999987 899999975321 001 000111100 00 0000000
Q ss_pred CCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC-cEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917 121 PGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG 196 (497)
Q Consensus 121 ~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lvlAtG~~~~~~~~~~g~~~~g 196 (497)
....... ...+.......+++.+++++.+ ++..++.....+..+++ .+++||+||||||++|+.+| .++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~ 156 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKW 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCe
Confidence 0000000 0000001122345568998875 55556644445555455 36999999999999987443 33322233
Q ss_pred EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917 197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276 (497)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~ 276 (497)
+.+ +.........+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.|++.||+++
T Consensus 157 v~~------~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~ 229 (458)
T PRK06912 157 IIN------SKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIF 229 (458)
T ss_pred EEc------chHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEE
Confidence 322 2223333345789999999999999999999999999999999999875 688999999999999999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcc--hhhcCCcccCCCEEecCCCCCCCCcEEEeccc
Q 010917 277 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 352 (497)
Q Consensus 277 ~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~ 352 (497)
+++++++++.. +..+ .+.. +| +++++|.|++|+|.+|+.+. ++..++..+++++.||+++||+.|||||+|||
T Consensus 230 ~~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~ 306 (458)
T PRK06912 230 TGAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDV 306 (458)
T ss_pred ECCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeec
Confidence 99999999753 2222 2332 34 36999999999999999875 46777777666799999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEeecCCC-------cEE
Q 010917 353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI 424 (497)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~~~ 424 (497)
+..+. ....|..+|+.+|.++.+... .++..+|.. .|..+ .+..+|.... ...
T Consensus 307 ~~~~~----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~---v~~~p------~~a~vGlte~~a~~~g~~~~ 367 (458)
T PRK06912 307 IGGIQ----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRC---IYTSP------EIASVGLTEKQAREQYGDIR 367 (458)
T ss_pred CCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeE---EecCc------hhEEeeCCHHHHHHCCCCeE
Confidence 96432 445699999999999986432 234556653 12111 0233343221 000
Q ss_pred E-------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCC--hhhhcCCCcHHHHHHH
Q 010917 425 E-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVD--KAKLQQASSVEEALEI 486 (497)
Q Consensus 425 ~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 486 (497)
. .+. ...+.++.++ +++|+|+++++.++.++.. +..+++.+.+++ ...++.|||++|+++.
T Consensus 368 ~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 446 (458)
T PRK06912 368 IGEFPFTANGKALIIGE-QTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHE 446 (458)
T ss_pred EEEEecCcchhHhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHH
Confidence 0 111 1346777664 4899999987777776554 445678888886 3446889999999999
Q ss_pred HHccCCc
Q 010917 487 ARAALPV 493 (497)
Q Consensus 487 ~~~~~~~ 493 (497)
|++.+..
T Consensus 447 ~~~~~~~ 453 (458)
T PRK06912 447 ALLQAVG 453 (458)
T ss_pred HHHHhhc
Confidence 9876543
No 37
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=4.9e-39 Score=328.79 Aligned_cols=394 Identities=20% Similarity=0.244 Sum_probs=262.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC------CCCCCCCCCcc-----ccCC------CCCCCCCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY------APYERPALTKG-----YLFP------LDKKPARLPG 122 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~------~~~~~~~l~~~-----~l~~------~~~~~~~~~~ 122 (497)
++||+||||||||+.||..+++.|. +|++||+... ..+....+..+ .+.. .......+ +
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~-g 77 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNY-G 77 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhc-C
Confidence 4799999999999999999999997 8999997421 01111111100 0000 00000000 0
Q ss_pred Cccc--cCCCC--------------CCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEEC--CC--cEEEeccEEeccCCC
Q 010917 123 FHTC--VGSGG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN--SG--KLLKYGSLIVATGCT 182 (497)
Q Consensus 123 ~~~~--~~~~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~g--~~i~~d~lvlAtG~~ 182 (497)
+... ...++ .......++..+|+++.+ ...-+++ +++.+. ++ ..+.||+||||||++
T Consensus 78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~ 154 (484)
T TIGR01438 78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDK--HRIKATNKKGKEKIYSAERFLIATGER 154 (484)
T ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCC
Confidence 0000 00000 011223456779999876 4444443 444442 33 369999999999999
Q ss_pred CCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHH
Q 010917 183 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 262 (497)
Q Consensus 183 ~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~ 262 (497)
|+. |.++|... .. .+++.+......+++++|||+|++|+|+|..|+++|.+|+++++ +.+++ .+++++.+
T Consensus 155 p~~-p~ipG~~~----~~---~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~ 224 (484)
T TIGR01438 155 PRY-PGIPGAKE----LC---ITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCAN 224 (484)
T ss_pred CCC-CCCCCccc----ee---ecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHH
Confidence 874 54554311 11 12333333334578999999999999999999999999999987 46665 48999999
Q ss_pred HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEeccCcCCCcc--hhhcCCccc--CCCEEe
Q 010917 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQV 335 (497)
Q Consensus 263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~--~g~i~v 335 (497)
.+++.|+++||++++++.+.+++..+ +. ..+.+.++ +++++|.|++|+|++||+++ +++.+++.+ +|+|.|
T Consensus 225 ~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~V 302 (484)
T TIGR01438 225 KVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPA 302 (484)
T ss_pred HHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEec
Confidence 99999999999999999999987543 32 23555555 37999999999999999987 567888765 377999
Q ss_pred cCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceee
Q 010917 336 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWW 413 (497)
Q Consensus 336 d~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~ 413 (497)
|++++|+.|+|||+|||+..... ....|..||+.+|+||+++.. ..|..+|+. .|..+ .+
T Consensus 303 d~~~~Ts~p~IyA~GDv~~~~~~---------l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p------~i 364 (484)
T TIGR01438 303 DEEEQTNVPYIYAVGDILEDKQE---------LTPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPL------EY 364 (484)
T ss_pred CCCcccCCCCEEEEEEecCCCcc---------chHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCC------ce
Confidence 99999999999999999963211 345699999999999986442 245566653 23221 13
Q ss_pred EEeecCCCc---------E-EEEccC-------------CCcEEEEEE-E--CCEEEEEEeecCChHHhhHH-HHHHhCC
Q 010917 414 QFFGDNVGE---------T-IEIGNF-------------DPKIATFWI-D--SGKLKGVLVESGSPEEFQLL-PTLARSQ 466 (497)
Q Consensus 414 ~~~g~~~~~---------~-~~~~~~-------------~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~ 466 (497)
..+|....+ . +....+ ...+.++.+ + +++|+|+++++.++.++... ..+++++
T Consensus 365 a~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~ 444 (484)
T TIGR01438 365 GACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCG 444 (484)
T ss_pred eeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 334432210 0 000111 123556654 3 58999999877777775544 5567888
Q ss_pred CCCC-h-hhhcCCCcHHHHHHHHHcc
Q 010917 467 PFVD-K-AKLQQASSVEEALEIARAA 490 (497)
Q Consensus 467 ~~~~-~-~~~~~~~~~~~~~~~~~~~ 490 (497)
.+++ . ...+.|||++|++..++..
T Consensus 445 ~t~~dl~~~~~~hPt~sE~~~~~~~~ 470 (484)
T TIGR01438 445 LTKKDLDNTIGIHPVCAEVFTTLSVT 470 (484)
T ss_pred CCHHHHhhhhcCCCChHHHHHHhhhh
Confidence 8886 3 3457899999999999865
No 38
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=2.1e-39 Score=332.85 Aligned_cols=400 Identities=21% Similarity=0.286 Sum_probs=267.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCC-CccccCCC------------C----CCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPAL-TKGYLFPL------------D----KKPARL 120 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~l~~~------------~----~~~~~~ 120 (497)
+||+||||||||++||..|+++|+ +|+|||++ ...- ++... ++.++... . ....++
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~~-~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGL---KVALVEKE-YLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCC---eEEEEecC-CCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 799999999999999999999997 89999993 3211 11111 11000000 0 000000
Q ss_pred CCCccc---cCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC-cEEEeccEEeccCCCCCcCCCCCCCCCCc
Q 010917 121 PGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG 196 (497)
Q Consensus 121 ~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lvlAtG~~~~~~~~~~g~~~~g 196 (497)
+..... ............+++.+++++.+ ++..++.....+...++ .++.||+||||||+.|+.+| .+ ...++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~~ 154 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFDG 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCCC
Confidence 000000 00000001122345678998886 45555544444444444 47999999999999987533 22 11222
Q ss_pred EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEE
Q 010917 197 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 276 (497)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~ 276 (497)
. .+.+..+. ......+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++. +++++...+.+.+++.||+++
T Consensus 155 ~-~~~~~~~~---~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i~ 229 (461)
T TIGR01350 155 E-VVITSTGA---LNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKIL 229 (461)
T ss_pred c-eEEcchHH---hccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEEE
Confidence 1 12222222 222345789999999999999999999999999999999998874 789999999999999999999
Q ss_pred cCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCc--chhhcCCccc-CCCEEecCCCCCCCCcEEEecc
Q 010917 277 KGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 351 (497)
Q Consensus 277 ~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD 351 (497)
+++++.+++.. ++.+ .+.+.+| +++++|.||+|+|.+|+++ +++++++..+ +|++.||++++|+.|+|||+||
T Consensus 230 ~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD 307 (461)
T TIGR01350 230 TNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGD 307 (461)
T ss_pred eCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeee
Confidence 99999999754 3333 3555666 5799999999999999998 5788888875 4779999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCCC-------c
Q 010917 352 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E 422 (497)
Q Consensus 352 ~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~-------~ 422 (497)
|+..+. ....|..+|+.+|.+|.+... .++...|+. ..++.. +..+|.... +
T Consensus 308 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g~~ 368 (461)
T TIGR01350 308 VIGGPM----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAGYD 368 (461)
T ss_pred cCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCCCC
Confidence 997432 456799999999999986432 223344542 222211 233333211 0
Q ss_pred E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC--hhhhcCCCcHHHHHH
Q 010917 423 T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEALE 485 (497)
Q Consensus 423 ~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~ 485 (497)
. ...- +....+.++.++ +++|+|+++++.++.++... ..+++++.+++ ...+..||+++|+++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~ 448 (461)
T TIGR01350 369 VKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIK 448 (461)
T ss_pred eEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHH
Confidence 0 0000 112346677664 48999999878777766544 55679998886 334688999999999
Q ss_pred HHHccCCc
Q 010917 486 IARAALPV 493 (497)
Q Consensus 486 ~~~~~~~~ 493 (497)
.|++++..
T Consensus 449 ~~~~~~~~ 456 (461)
T TIGR01350 449 EAALAALG 456 (461)
T ss_pred HHHHHhcc
Confidence 99887544
No 39
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=2.6e-39 Score=329.30 Aligned_cols=317 Identities=24% Similarity=0.301 Sum_probs=232.8
Q ss_pred cCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEE
Q 010917 142 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV 221 (497)
Q Consensus 142 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV 221 (497)
.||+++.+..+.. +.++|.+.+|+++.||+||||||+.|.. |+..+ ..++. +.+..+...+ ...+++++|
T Consensus 105 ~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~-~~~~~~~~~l---~~~~k~vvV 174 (452)
T TIGR03452 105 PNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVR-YHTNEDIMRL---PELPESLVI 174 (452)
T ss_pred CCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCE-EEcHHHHHhh---hhcCCcEEE
Confidence 6899998754432 5678888888889999999999999864 43222 22332 2333343333 235789999
Q ss_pred EcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc
Q 010917 222 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 301 (497)
Q Consensus 222 vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~ 301 (497)
||+|++|+|+|..|++.|.+|+++++.+.+++. +++++...+.+.+ +.||+++++++|++++..+ +.+ .+.+.+|+
T Consensus 175 IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~-~~v-~v~~~~g~ 250 (452)
T TIGR03452 175 VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDG-DGV-TLTLDDGS 250 (452)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC-CeE-EEEEcCCC
Confidence 999999999999999999999999999988864 7889888887755 5689999999999998543 333 46677888
Q ss_pred EEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917 302 TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 378 (497)
Q Consensus 302 ~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 378 (497)
++++|.|++++|++||+++ ++++|++.+ +|+|.||+++||+.|+|||+|||+..+. ....|..||+.
T Consensus 251 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~ 320 (452)
T TIGR03452 251 TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEARV 320 (452)
T ss_pred EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHHH
Confidence 9999999999999999987 467788875 5779999999999999999999997542 23458899999
Q ss_pred HHHHHhcCC---CCCCCCCCceeeeccccCCCCcceeeEEeecCCCc-------E-EEEcc-----------CCCcEEEE
Q 010917 379 CIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T-IEIGN-----------FDPKIATF 436 (497)
Q Consensus 379 ~a~~i~~~~---~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-------~-~~~~~-----------~~~~~~~~ 436 (497)
+|+||++.. ...+..+|.. .|..+ .+..+|....+ . +..-. ....+.++
T Consensus 321 ~a~ni~~~~~~~~~~~~~~p~~---i~t~p------~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kl 391 (452)
T TIGR03452 321 VKHNLLHPNDLRKMPHDFVPSA---VFTHP------QIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKL 391 (452)
T ss_pred HHHHhcCCCCcccCCCCCCCeE---EECCC------CeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEE
Confidence 999998643 2344556653 23211 13344443221 0 00000 11346677
Q ss_pred EEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-hhh--hcCCCcHHHHHHHHHccC
Q 010917 437 WID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK--LQQASSVEEALEIARAAL 491 (497)
Q Consensus 437 ~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 491 (497)
.++ +++|+|+++++.++.++... ..+++.+.+++ ... .+.|||++|+++.|++++
T Consensus 392 v~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 452 (452)
T TIGR03452 392 IADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL 452 (452)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence 664 58999999878777766555 45678998886 443 468999999999998864
No 40
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=7.8e-41 Score=339.86 Aligned_cols=331 Identities=20% Similarity=0.209 Sum_probs=243.1
Q ss_pred EeecccccccCccccc--CCCCccccc------CCCCchhhhccccccc---------ccccCCCCCcEEEEcCchHHHH
Q 010917 12 SVSNSLSFKHGLSLWC--PQSPSLHRI------RHSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGY 74 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~~~~~~~~~VvIIGgG~AGl~ 74 (497)
..+||||.++|++|+. +|..+|.+. ..++++..++|+..+. ..+.....++|+||||||||++
T Consensus 68 ~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~ 147 (449)
T TIGR01316 68 KTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLA 147 (449)
T ss_pred HHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHH
Confidence 4689999999999998 899999864 2789999988876532 1123345789999999999999
Q ss_pred HHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEE
Q 010917 75 AARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTS 154 (497)
Q Consensus 75 aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 154 (497)
||..|++.|+ +|+|+|+++..... +. +-.+....+..+ .....+++.+.|+++++++.+
T Consensus 148 aA~~l~~~G~---~V~vie~~~~~GG~---l~--~gip~~~~~~~~-----------~~~~~~~l~~~gv~~~~~~~v-- 206 (449)
T TIGR01316 148 CASELAKAGH---SVTVFEALHKPGGV---VT--YGIPEFRLPKEI-----------VVTEIKTLKKLGVTFRMNFLV-- 206 (449)
T ss_pred HHHHHHHCCC---cEEEEecCCCCCcE---ee--ecCCCccCCHHH-----------HHHHHHHHHhCCcEEEeCCcc--
Confidence 9999999998 89999997643210 00 000100011000 122345677889999998644
Q ss_pred EecCCCEEEECCCcEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecCHHHHHHHHH---------hhccCCeEEEEcC
Q 010917 155 IDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGG 224 (497)
Q Consensus 155 i~~~~~~v~~~~g~~i~~d~lvlAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvVvG~ 224 (497)
.+.+++++.. ..||+||||||+ .|+ .+.++|.+.++++...++.+...+.. ....+++|+|||+
T Consensus 207 ----~~~v~~~~~~-~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGg 280 (449)
T TIGR01316 207 ----GKTATLEELF-SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGG 280 (449)
T ss_pred ----CCcCCHHHHH-hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECC
Confidence 2334444332 479999999998 565 45677877888877655444332221 1235789999999
Q ss_pred CHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC------
Q 010917 225 GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------ 298 (497)
Q Consensus 225 G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~------ 298 (497)
|++|+|+|..+.++|.+||++++.+.... + ......+.+++.||++++++.++++..++++++..+.+.
T Consensus 281 G~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~--~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 355 (449)
T TIGR01316 281 GNTAVDSARTALRLGAEVHCLYRRTREDM---T--ARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQE 355 (449)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeecCcccC---C--CCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecC
Confidence 99999999999999999999998764211 1 112233567899999999999999976555666655543
Q ss_pred ---CC-----------cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcc
Q 010917 299 ---DG-----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 363 (497)
Q Consensus 299 ---~g-----------~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~ 363 (497)
+| +++++|.||+|+|+.|+..+++.+++..+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 356 ~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~------ 429 (449)
T TIGR01316 356 QIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA------ 429 (449)
T ss_pred cCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH------
Confidence 22 36999999999999999988888888765 5789999999999999999999986432
Q ss_pred cccccHHHHHHHHHHHHHHHh
Q 010917 364 ARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 364 ~~~~~~~~A~~~g~~~a~~i~ 384 (497)
.+..|+.+|+.||.+|.
T Consensus 430 ----~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 430 ----TVIRAMGQGKRAAKSIN 446 (449)
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 55679999999999985
No 41
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=1.2e-38 Score=323.87 Aligned_cols=371 Identities=21% Similarity=0.313 Sum_probs=274.4
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCC-HhHHHHcCcEEEeCCcE
Q 010917 74 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT-PEWYKEKGIEMIYQDPV 152 (497)
Q Consensus 74 ~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v 152 (497)
+||.+|++.+. +.+|||||+++.+.|....++. +..........+ ..+. ..++.+.|++++++++|
T Consensus 1 saA~~l~~~~~-~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V 67 (427)
T TIGR03385 1 SAASRVRRLDK-ESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEV 67 (427)
T ss_pred CHHHHHHhhCC-CCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEE
Confidence 47899998763 6789999999987665433332 111111101110 1222 34558889999888999
Q ss_pred EEEecCCCEEEECC---CcEEE--eccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh--ccCCeEEEEcCC
Q 010917 153 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG 225 (497)
Q Consensus 153 ~~i~~~~~~v~~~~---g~~i~--~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvG~G 225 (497)
+.++++.+++.+.+ ++.+. ||+||||||+.|.. |.++|.+.++++..+++.++..+.+.+ ..+++|+|||+|
T Consensus 68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~-~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-PNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 99999888887753 34677 99999999999874 556776667788888888887776665 457899999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEc
Q 010917 226 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 305 (497)
Q Consensus 226 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~ 305 (497)
++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+++++. ++.+ +.+.+|+++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~ 222 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA 222 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence 9999999999999999999999988754457888999999999999999999999999974 3333 45678889999
Q ss_pred CEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917 306 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 306 D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~ 384 (497)
|.+|+|+|.+|+.++++++++..+ +|+|.||++++|+.|+|||+|||+..+....+.......+..|.+||+.+|+||.
T Consensus 223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 999999999999999999998875 5789999999999999999999998766544443334477789999999999998
Q ss_pred cCCCCCCCCC-CceeeeccccCCCCcceeeEEeecCCCc---------EEEEc---------cCCCcEEEEEEE--CCEE
Q 010917 385 SAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG---------NFDPKIATFWID--SGKL 443 (497)
Q Consensus 385 ~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~~~g~~~~~---------~~~~~---------~~~~~~~~~~~~--~~~~ 443 (497)
+. ...|... +..++..++.. +..+|....+ ..... +....+.++.++ +++|
T Consensus 303 g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~i 374 (427)
T TIGR03385 303 GN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRI 374 (427)
T ss_pred CC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeE
Confidence 64 3445432 23334444432 5566654321 11110 001236677764 4999
Q ss_pred EEEEeecCC-hHHhh-HHHHHHhCCCCCC
Q 010917 444 KGVLVESGS-PEEFQ-LLPTLARSQPFVD 470 (497)
Q Consensus 444 ~g~~~~~~~-~~~~~-~~~~~~~~~~~~~ 470 (497)
+|+++++.+ +.++. .+..+++++.+++
T Consensus 375 lG~~~~g~~~a~e~i~~~~~ai~~~~t~~ 403 (427)
T TIGR03385 375 LGAQAVGKEGADKRIDVLAAAIMAGLTVK 403 (427)
T ss_pred EEEEEEccccHHHHHHHHHHHHHCCCCHH
Confidence 999987766 66654 4455678887776
No 42
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.2e-40 Score=336.96 Aligned_cols=334 Identities=20% Similarity=0.205 Sum_probs=242.3
Q ss_pred EeecccccccCccccc--CCCCcccccC--CCCchhhhccccccc--------ccccCCCCCcEEEEcCchHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVA--------YSSFANENREFVIVGGGNAAGYAARTF 79 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~~~VvIIGgG~AGl~aA~~L 79 (497)
..+||||.+||++|++ +|..+|.|.. .+++|..++|+..+. ..+...+.++|+|||||||||+||..|
T Consensus 80 ~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l 159 (464)
T PRK12831 80 AKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDL 159 (464)
T ss_pred HHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHH
Confidence 4579999999999997 8999999965 789999998887642 122345678999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC
Q 010917 80 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 159 (497)
Q Consensus 80 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~ 159 (497)
+++|+ +|+|+|+++...-. +. +-.+. .+++. ........+++++.|+++++++.+.
T Consensus 160 ~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~~l~~------~~~~~~~~~~~~~~gv~i~~~~~v~------ 215 (464)
T PRK12831 160 AKMGY---DVTIFEALHEPGGV---LV--YGIPE----FRLPK------ETVVKKEIENIKKLGVKIETNVVVG------ 215 (464)
T ss_pred HhCCC---eEEEEecCCCCCCe---ee--ecCCC----ccCCc------cHHHHHHHHHHHHcCCEEEcCCEEC------
Confidence 99998 89999987643100 00 00010 01110 0011233467788999999987542
Q ss_pred CEEEECCC-cEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEecCHHHHHHHHH--------hhccCCeEEEEcCCHHHH
Q 010917 160 QTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIGM 229 (497)
Q Consensus 160 ~~v~~~~g-~~i~~d~lvlAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g~ 229 (497)
+.+.+++. +.+.||+||||||+ .|+. +.++|.+.+++++..++.....+.. ....+++|+|||+|++|+
T Consensus 216 ~~v~~~~~~~~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~ 294 (464)
T PRK12831 216 KTVTIDELLEEEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAM 294 (464)
T ss_pred CcCCHHHHHhccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHH
Confidence 22333332 23579999999998 5664 5568888888887665544332211 124679999999999999
Q ss_pred HHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------
Q 010917 230 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE----------- 298 (497)
Q Consensus 230 e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~----------- 298 (497)
|+|..+.++|.+|+++++.+... ++... ..+ +.+++.||++++++.+.++..++++++..+.+.
T Consensus 295 d~A~~l~r~Ga~Vtlv~r~~~~~---m~a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~G 369 (464)
T PRK12831 295 DAARTALRLGAEVHIVYRRSEEE---LPARV-EEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASG 369 (464)
T ss_pred HHHHHHHHcCCEEEEEeecCccc---CCCCH-HHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCC
Confidence 99999999999999999865311 11111 122 345788999999999999976556666555442
Q ss_pred -------CC--cEEEcCEEEEeccCcCCCcchhh-cCCccc-CCCEEecCC-CCCCCCcEEEeccccccCCccCCccccc
Q 010917 299 -------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARV 366 (497)
Q Consensus 299 -------~g--~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~g~~~~~ 366 (497)
+| .++++|.||+|+|+.|+..++.+ .++..+ +|++.||++ ++|+.|+|||+|||+..+.
T Consensus 370 r~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~--------- 440 (464)
T PRK12831 370 RRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA--------- 440 (464)
T ss_pred CccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch---------
Confidence 22 26999999999999999888776 677764 578999997 9999999999999987432
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 010917 367 EHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 367 ~~~~~A~~~g~~~a~~i~~ 385 (497)
.+..|+.+|+.||.+|..
T Consensus 441 -~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 441 -TVILAMGAGKKAAKAIDE 458 (464)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 455688999999988853
No 43
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.1e-39 Score=332.59 Aligned_cols=398 Identities=21% Similarity=0.275 Sum_probs=263.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCCccccC--------------C--CCCCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLF--------------P--LDKKPAR 119 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~---~~~~~l~~~~l~--------------~--~~~~~~~ 119 (497)
.++||+||||||||++||..|++.|. +|+|||++.... +..+--++.++. + ......+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 35899999999999999999999987 899999943211 000000110000 0 0000000
Q ss_pred CCCCccccC---CCCCCCC-HhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC--
Q 010917 120 LPGFHTCVG---SGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY-- 193 (497)
Q Consensus 120 ~~~~~~~~~---~~~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~-- 193 (497)
+........ ..+.... ...++..+++++.+ ++..++ .+.+.+ +++++.||+||||||+. .|.++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~~~ 151 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR---VPPIPGVWLI 151 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCccc
Confidence 000000000 0000011 12234457777764 344343 345555 66789999999999998 23334431
Q ss_pred -CCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCC
Q 010917 194 -LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 272 (497)
Q Consensus 194 -~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~G 272 (497)
...+.+ .+........+++++|||+|++|+|+|..|.++|.+|+++++.+.+++. +++++...+++.++++
T Consensus 152 ~~~~~~~------~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~- 223 (460)
T PRK06292 152 LGDRLLT------SDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE- 223 (460)
T ss_pred CCCcEEC------chHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc-
Confidence 122222 2222222345799999999999999999999999999999999998874 7899999999999999
Q ss_pred cEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEE
Q 010917 273 VKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF 347 (497)
Q Consensus 273 V~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iy 347 (497)
|++++++++++++..++..+ .+++.++ +++++|.|++++|.+|++++ ++.++++.+ +|++.||+++||+.|+||
T Consensus 224 I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~Iy 302 (460)
T PRK06292 224 FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIY 302 (460)
T ss_pred cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEE
Confidence 99999999999985432122 2323333 57999999999999999985 677888765 577999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCCCc---
Q 010917 348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--- 422 (497)
Q Consensus 348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~--- 422 (497)
|+|||+..+. ....|..||+.+|.||++... ..+..+|+. .|..+ .+..+|....+
T Consensus 303 A~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~---~~~~~------~~a~vG~te~~a~~ 363 (460)
T PRK06292 303 AAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPSV---VFTDP------QIASVGLTEEELKA 363 (460)
T ss_pred EEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCeE---EECCC------ccEEeECCHHHHHh
Confidence 9999997532 345699999999999986322 234455642 23211 13445543221
Q ss_pred ----E-EEEcc-----------CCCcEEEEEEE--CCEEEEEEeecCChHHhh-HHHHHHhCCCCCC--hhhhcCCCcHH
Q 010917 423 ----T-IEIGN-----------FDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVE 481 (497)
Q Consensus 423 ----~-~~~~~-----------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 481 (497)
. ...-. ....+.++.++ +++|+|+++++.++.++. .+..+++++.+++ ....+.|||+.
T Consensus 364 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 443 (460)
T PRK06292 364 AGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLS 443 (460)
T ss_pred cCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence 0 00000 12346677664 489999998777777655 4456679998887 34457899999
Q ss_pred HHHHHHHccCCcc
Q 010917 482 EALEIARAALPVE 494 (497)
Q Consensus 482 ~~~~~~~~~~~~~ 494 (497)
|++..+++.+..+
T Consensus 444 e~~~~~~~~~~~~ 456 (460)
T PRK06292 444 EGLRTALRDLFSK 456 (460)
T ss_pred HHHHHHHHHHhhh
Confidence 9999998876543
No 44
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=6.7e-39 Score=328.91 Aligned_cols=401 Identities=18% Similarity=0.263 Sum_probs=267.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCC---CCCCCC-ccccC-----C-------C-CC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPY---ERPALT-KGYLF-----P-------L-DK 115 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~------~~~~~---~~~~l~-~~~l~-----~-------~-~~ 115 (497)
..+||+||||||||++||.++++.|. +|+|||+. ....- .+...+ +.++. . . ..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~ 79 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI 79 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc
Confidence 35899999999999999999999987 89999981 11100 000000 10000 0 0 00
Q ss_pred C----CCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEec--CCCEEEEC--CCcEEEeccEEeccCCCCC
Q 010917 116 K----PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 116 ~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~g~~i~~d~lvlAtG~~~~ 184 (497)
. ..+++...... -..........++..+++++.+ ++..++. +.++|.+. ++++++||+||||||+.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~ 158 (475)
T PRK06327 80 HVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR 158 (475)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC
Confidence 0 00000000000 0000001123345568998875 5555553 24566664 3457999999999999986
Q ss_pred cCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHH
Q 010917 185 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 264 (497)
Q Consensus 185 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~ 264 (497)
.+|.++ ..+...+ +++........+++++|||+|++|+|+|..|+++|.+|+++++.+.+++. +++++.+.+
T Consensus 159 ~~p~~~---~~~~~~~----~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~ 230 (475)
T PRK06327 159 HLPGVP---FDNKIIL----DNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEA 230 (475)
T ss_pred CCCCCC---CCCceEE----CcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHH
Confidence 444322 2222122 12223332345799999999999999999999999999999999988875 789999999
Q ss_pred HHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecC
Q 010917 265 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDG 337 (497)
Q Consensus 265 ~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~ 337 (497)
.+.++++||+++++++|++++..++ .+ .+.+.+ | +++++|.|++++|++|++++ ++.+++..+ +|++.||+
T Consensus 231 ~~~l~~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~ 308 (475)
T PRK06327 231 AKAFTKQGLDIHLGVKIGEIKTGGK-GV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDD 308 (475)
T ss_pred HHHHHHcCcEEEeCcEEEEEEEcCC-EE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECC
Confidence 9999999999999999999986433 33 344433 3 47999999999999999884 567788765 57799999
Q ss_pred CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccccCCCCcceeeEEe
Q 010917 338 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFF 416 (497)
Q Consensus 338 ~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~ 416 (497)
+++|+.|+|||+|||+..+. ....|..||+.+|.+|++... ..|..+|+.. |..+ .+..+
T Consensus 309 ~~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~---~~~p------e~a~v 369 (475)
T PRK06327 309 HCRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI---YTSP------EIAWV 369 (475)
T ss_pred CCccCCCCEEEEEeccCCcc----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---eCCc------ceEEE
Confidence 99999999999999997432 445699999999999986432 2455566532 2211 13344
Q ss_pred ecCCCc-------E-EE------------EccCCCcEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCC-h-
Q 010917 417 GDNVGE-------T-IE------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K- 471 (497)
Q Consensus 417 g~~~~~-------~-~~------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~- 471 (497)
|....+ + .. .+. ...+.++.++ +++|+|+++++.++.++... ..+++++.+++ .
T Consensus 370 Glte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 448 (475)
T PRK06327 370 GKTEQQLKAEGVEYKAGKFPFMANGRALAMGE-PDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA 448 (475)
T ss_pred eCCHHHHHHcCCCEEEEEEcccccchhhhcCC-CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 443211 0 00 011 1346777664 58999999888877776644 55679998886 3
Q ss_pred hhhcCCCcHHHHHHHHHccCCc
Q 010917 472 AKLQQASSVEEALEIARAALPV 493 (497)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~ 493 (497)
..++.|||++|.++.|++.+..
T Consensus 449 ~~~~~hPt~~e~~~~~~~~~~~ 470 (475)
T PRK06327 449 RICHAHPTLSEVWHEAALAVDK 470 (475)
T ss_pred cCCcCCCChHHHHHHHHHHhcc
Confidence 3357899999999999876543
No 45
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=7.4e-39 Score=329.07 Aligned_cols=393 Identities=18% Similarity=0.205 Sum_probs=255.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC----CC--CCCCCCC------Ccccc---------------CC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----YA--PYERPAL------TKGYL---------------FP 112 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~----~~--~~~~~~l------~~~~l---------------~~ 112 (497)
++||+||||||||++||..|+++|. +|+|||+.. .. .+....+ ++-++ ++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 5899999999999999999999998 899999632 10 0000000 00000 00
Q ss_pred CC-CCCCCCCCCccccC---CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECC---CcEEEeccEEeccCCCCCc
Q 010917 113 LD-KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 113 ~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---g~~i~~d~lvlAtG~~~~~ 185 (497)
.. ....++..+..... ..+.......++..+|+++.+ ++.. .+.++|.+.+ +..++||+||||||+.|..
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 00 00000000000000 000000111123356777664 3332 2345665532 3479999999999999874
Q ss_pred CCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH
Q 010917 186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265 (497)
Q Consensus 186 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~ 265 (497)
++.++|... ... +++.+......+++++|||+|++|+|+|..|+++|.+||++++. .+++ .+++++.+.++
T Consensus 159 p~~i~G~~~----~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~ 229 (499)
T PTZ00052 159 PEDVPGAKE----YSI---TSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVV 229 (499)
T ss_pred CCCCCCccc----eee---cHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHH
Confidence 333454321 111 23333333345789999999999999999999999999999874 5664 48999999999
Q ss_pred HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch--hhcCCccc-CCCEEecCCCCCC
Q 010917 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTR 342 (497)
Q Consensus 266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~ 342 (497)
+.|++.||++++++.+.+++..+ +. ..+.+.+|+++++|.|++++|++||++++ ++++++.+ +|++.+++. +|+
T Consensus 230 ~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts 306 (499)
T PTZ00052 230 EYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTN 306 (499)
T ss_pred HHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCC
Confidence 99999999999999999987543 32 34677788899999999999999999875 67888775 466677766 999
Q ss_pred CCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccccCCCCcceeeEEeecCC
Q 010917 343 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV 420 (497)
Q Consensus 343 ~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~ 420 (497)
.|+|||+|||+.... ..+..|..||+.+|.||++... ..+..+|+. .|..+- +..+|...
T Consensus 307 ~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~---ift~p~------ia~vGlte 368 (499)
T PTZ00052 307 IPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTT---IFTPIE------YGACGYSS 368 (499)
T ss_pred CCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeE---EecCCc------ceeecCCH
Confidence 999999999996321 1556799999999999997432 234555653 232210 22333211
Q ss_pred Cc---------E-EEE-----------------cc---------CCCcEEEEEEE---CCEEEEEEeecCChHHhhHHH-
Q 010917 421 GE---------T-IEI-----------------GN---------FDPKIATFWID---SGKLKGVLVESGSPEEFQLLP- 460 (497)
Q Consensus 421 ~~---------~-~~~-----------------~~---------~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~- 460 (497)
.+ . +.. +. ....|.++.++ +++|+|+++++.++.++...-
T Consensus 369 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~ 448 (499)
T PTZ00052 369 EAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFS 448 (499)
T ss_pred HHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHH
Confidence 10 0 000 00 02346667553 499999999888888876554
Q ss_pred HHHhCCCCCC-h-hhhcCCCcHHHHHHHHH
Q 010917 461 TLARSQPFVD-K-AKLQQASSVEEALEIAR 488 (497)
Q Consensus 461 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 488 (497)
.+++++.+++ . ..++.|||++|++..+.
T Consensus 449 ~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~ 478 (499)
T PTZ00052 449 LALKLGAKKSDFDSMIGIHPTDAEVFMNLS 478 (499)
T ss_pred HHHHCCCCHHHHhcccccCCCCchhhEEEE
Confidence 5578888876 3 34578999999986654
No 46
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=2.8e-38 Score=342.24 Aligned_cols=330 Identities=19% Similarity=0.202 Sum_probs=239.8
Q ss_pred EeecccccccCccccc--CCCCcccccCCCCchhhhccccccc-----------c----cc-cCCCCCcEEEEcCchHHH
Q 010917 12 SVSNSLSFKHGLSLWC--PQSPSLHRIRHSSAKNFQRRGFVVA-----------Y----SS-FANENREFVIVGGGNAAG 73 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~-~~~~~~~VvIIGgG~AGl 73 (497)
..+||||.+||++|+. +|..+|.+...+++|..++|+..+. . .+ .....++|+|||||||||
T Consensus 240 ~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGL 319 (944)
T PRK12779 240 ESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGL 319 (944)
T ss_pred HHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHH
Confidence 4689999999999998 6999999988899999988776543 0 11 134579999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcccc---CCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCC
Q 010917 74 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL---FPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQD 150 (497)
Q Consensus 74 ~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 150 (497)
+||..|+++|| +|||+|+.+... |++ .+....+.++ ..+..+.+++.|+++++++
T Consensus 320 saA~~Lar~G~---~VtVfE~~~~~G--------G~l~yGIP~~rlp~~v-----------i~~~i~~l~~~Gv~f~~n~ 377 (944)
T PRK12779 320 INAYLLAVEGF---PVTVFEAFHDLG--------GVLRYGIPEFRLPNQL-----------IDDVVEKIKLLGGRFVKNF 377 (944)
T ss_pred HHHHHHHHCCC---eEEEEeeCCCCC--------ceEEccCCCCcChHHH-----------HHHHHHHHHhhcCeEEEeE
Confidence 99999999999 899999986432 111 1111111111 1234456778899999875
Q ss_pred cEEEEecCCCEEEECCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHHh----------hccCCeE
Q 010917 151 PVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKV 219 (497)
Q Consensus 151 ~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~----------~~~~~~v 219 (497)
.+ .+.+++++.....||+|+||||+. |+ .+.+||.+.+||++..++.+....... ...+++|
T Consensus 378 ~v------G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~V 450 (944)
T PRK12779 378 VV------GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEV 450 (944)
T ss_pred Ee------ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEE
Confidence 44 345666665556899999999995 55 456788888999887665544332211 1257999
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC-CCcEEEEEe-
Q 010917 220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKL- 297 (497)
Q Consensus 220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~~~v~~v~~- 297 (497)
+|||||.+|+|+|..+.++|.+|+++.+++.- .++ .....+.. ..+.||+++++..++++..++ ++.+..+.+
T Consensus 451 vVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~---~mp-a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~ 525 (944)
T PRK12779 451 FVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS---EMP-ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLD 525 (944)
T ss_pred EEECCCHHHHHHHHHHHHcCCEEEEEEecCcc---ccc-ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEE
Confidence 99999999999999999999999999987531 111 22223333 357799999999999997542 234544332
Q ss_pred --------C--------CC--cEEEcCEEEEeccCcCCCcchh-hcCCccc-CCCEEecC-CCCCCCCcEEEeccccccC
Q 010917 298 --------E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFP 356 (497)
Q Consensus 298 --------~--------~g--~~i~~D~vv~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~iya~GD~~~~~ 356 (497)
. +| .+++||.||+|+|+.|+..+.. ..+++.+ +|.|.||+ +++|+.|+|||+|||+..+
T Consensus 526 ~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~ 605 (944)
T PRK12779 526 VNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG 605 (944)
T ss_pred EEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh
Confidence 1 22 3699999999999999965432 3466654 57799997 5899999999999999754
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917 357 LKMYDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 357 ~~~~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
. .+..|+.+|+.||.+|..
T Consensus 606 ~----------~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 606 S----------TAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred H----------HHHHHHHHHHHHHHHHHH
Confidence 2 445688999999999864
No 47
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-38 Score=295.17 Aligned_cols=405 Identities=23% Similarity=0.359 Sum_probs=313.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCC---
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT--- 135 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 135 (497)
...-.+|||||.+..+++...+.+.. ...+.+|+.++..||.||+|++.+++........-..|..|.|+....++
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da-~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDA-TAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCC-CceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence 34568999999999998888887765 77899999999999999999998876655444433445555554332211
Q ss_pred -----HhHH---HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCC---CCCcEEEecCHH
Q 010917 136 -----PEWY---KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVA 204 (497)
Q Consensus 136 -----~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~---~~~gv~~~~~~~ 204 (497)
.+.+ ..-||-+..+..|..+|.+.+.|++.||.+|.||.++||||.+|..++.+... -...+.+++...
T Consensus 256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~ 335 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA 335 (659)
T ss_pred cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence 1122 22379999999999999999999999999999999999999999876644221 134577888888
Q ss_pred HHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917 205 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 280 (497)
Q Consensus 205 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~----~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~ 280 (497)
|.+++...+...++|.|||+|++|.|+|..|.+ .|.+|+-+......+...+++.++++-.+.+++.||.++.+..
T Consensus 336 DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~ 415 (659)
T KOG1346|consen 336 DFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAK 415 (659)
T ss_pred HHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchh
Confidence 998888877777999999999999999999975 4678888888877888888889999999999999999999999
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc--CCCEEecCCCCCCCCcEEEeccccccCCc
Q 010917 281 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358 (497)
Q Consensus 281 v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 358 (497)
|.++.... +. ..+.++||.++..|+||+|+|-.||.++++..|++.+ -||+.||..++.. .|||++||++.+.+.
T Consensus 416 v~sv~~~~-~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~ 492 (659)
T KOG1346|consen 416 VESVRKCC-KN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDG 492 (659)
T ss_pred hhhhhhhc-cc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhcc
Confidence 99887543 23 3578999999999999999999999999999999876 4889999999864 799999999999998
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccccCCCCc----ceeeEEee---cCC-----CcE---
Q 010917 359 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFG---DNV-----GET--- 423 (497)
Q Consensus 359 ~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~~~~~~~p~~~~~~~~~~g~~~----~~~~~~~g---~~~-----~~~--- 423 (497)
..|+. +++||.+|...|+.|..||.+ ...+|.....||++.-..-|... ...+..+| .+. ++.
T Consensus 493 ~LGrR-RVehhdhavvSGRLAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~ 570 (659)
T KOG1346|consen 493 VLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSES 570 (659)
T ss_pred cccce-eccccccceeeceeccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhhc
Confidence 87764 588999999999999999985 56788888899997432211100 00000111 000 000
Q ss_pred ------------------------------EEEccCCCcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhCCCCCC
Q 010917 424 ------------------------------IEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 470 (497)
Q Consensus 424 ------------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (497)
-..++-.+|-+.||++|++|||+++ .|--..+...++.|..+...|
T Consensus 571 sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~d 646 (659)
T KOG1346|consen 571 SDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYD 646 (659)
T ss_pred cCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchh
Confidence 0011112466899999999999997 565567888889988777665
No 48
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=2e-37 Score=308.78 Aligned_cols=293 Identities=23% Similarity=0.336 Sum_probs=227.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 141 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (497)
+|||||||+||+.+|.+|+++..++.+|+|||++++++|.. .++ .++... ....++ .....+++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~-~~~~g~-~~~~~~-----------~~~~~~~~~~ 66 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLP-GMIAGH-YSLDEI-----------RIDLRRLARQ 66 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhh-HHHhee-CCHHHh-----------cccHHHHHHh
Confidence 58999999999999999976533366999999999887763 222 122111 111111 1334567778
Q ss_pred cCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH----HHHhh---c
Q 010917 142 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E 214 (497)
Q Consensus 142 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~~~~---~ 214 (497)
.+++++.+ +|+.+|+++++|.+++|+++.||+||||||+.+. .|.++|. .++++.++++.++.. +.+.. .
T Consensus 67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEGA-ADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 89999885 8999999999999999988999999999999987 4556663 455666666666554 33322 2
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHh----CC--CcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVG----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 288 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~----~g--~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~ 288 (497)
.+++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++. +++.+...+.+.++++||++++++++++++.+
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~- 220 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG- 220 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-
Confidence 45799999999999999999975 34 489999 56666654 78889999999999999999999999998632
Q ss_pred CCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCC-CCCcEEEeccccccCCccCCccccc
Q 010917 289 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARV 366 (497)
Q Consensus 289 ~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t-~~~~iya~GD~~~~~~~~~g~~~~~ 366 (497)
.+.+.+|+++++|.+|+|+|.+|+ .++...++..+ +|++.||+++|| +.|||||+|||+..+..+. .
T Consensus 221 -----~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~ 289 (364)
T TIGR03169 221 -----ALILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----P 289 (364)
T ss_pred -----eEEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----C
Confidence 467788999999999999999998 46667777764 588999999998 9999999999998654322 1
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 010917 367 EHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 367 ~~~~~A~~~g~~~a~~i~~ 385 (497)
.....|..||+.+|+||..
T Consensus 290 ~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 290 KAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CchHHHHHhHHHHHHHHHH
Confidence 2445689999999999964
No 49
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.2e-37 Score=287.57 Aligned_cols=403 Identities=21% Similarity=0.353 Sum_probs=279.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCCccccCCC------------------CCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFPL------------------DKK 116 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~-~~l~~~~l~~~------------------~~~ 116 (497)
..+||+|||+||+|..||...++.|+ +-+.||++..+.-. . +--++.+|... +..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 57999999999999999999999998 78899997643211 0 00011111100 001
Q ss_pred CCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCcCCCCCC
Q 010917 117 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG 191 (497)
Q Consensus 117 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~~~~~~g 191 (497)
..+++.+.... -+.+..-....+++++|++..+ .-.-+++..-++.-.+| ..+.++.+|+||||.-.++| |
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~P---G 190 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFP---G 190 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCC---C
Confidence 11111100000 0000111233456678888775 33345555445555555 36899999999999643233 4
Q ss_pred CCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC
Q 010917 192 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 271 (497)
Q Consensus 192 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (497)
..+++-... .++..+....-+++++|+|+|.+|+|++....++|.+||+++..+.+.+. +|.++++.+++.|+++
T Consensus 191 I~IDekkIV----SStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQ 265 (506)
T KOG1335|consen 191 ITIDEKKIV----SSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQ 265 (506)
T ss_pred eEecCceEE----ecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhc
Confidence 333321111 23333333456899999999999999999999999999999999999986 9999999999999999
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCC
Q 010917 272 GVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM 343 (497)
Q Consensus 272 GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~ 343 (497)
|++|+++++|...+.+++|.+ .+.+.+ + ++++||.+++++|++|-++- +++.|+..| .+++.||..++|.+
T Consensus 266 gikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~v 344 (506)
T KOG1335|consen 266 GIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKV 344 (506)
T ss_pred CceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccC
Confidence 999999999999998888754 344432 2 57999999999999998764 577787765 67899999999999
Q ss_pred CcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-CCCCCCCCceeeeccccCCCCcceeeEEeecCCCc
Q 010917 344 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE 422 (497)
Q Consensus 344 ~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~ 422 (497)
|+||++||+...|. ...-|..+|..+.+.|.++. ...|.-+|. ..|.++- +.++|..+.+
T Consensus 345 P~i~~IGDv~~gpM----------LAhkAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEeq 405 (506)
T KOG1335|consen 345 PHIYAIGDVTLGPM----------LAHKAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQ 405 (506)
T ss_pred CceEEecccCCcch----------hhhhhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchhh
Confidence 99999999998765 33348889999999988754 346666773 4455442 4445554432
Q ss_pred E------EEEccC-------------CCcEEEEEEE--CCEEEEEEeecCChHHhhHHHHH-HhCCCCCC-hhhh-cCCC
Q 010917 423 T------IEIGNF-------------DPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD-KAKL-QQAS 478 (497)
Q Consensus 423 ~------~~~~~~-------------~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~ 478 (497)
. ...|.+ ...|.++..+ +++++|++++++.+.++.+-..| +.-+.... ...+ +.||
T Consensus 406 lkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHP 485 (506)
T KOG1335|consen 406 LKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHP 485 (506)
T ss_pred HHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCC
Confidence 1 112211 1346666553 59999999988888887765544 56666554 3443 9999
Q ss_pred cHHHHHHHHHccCCc
Q 010917 479 SVEEALEIARAALPV 493 (497)
Q Consensus 479 ~~~~~~~~~~~~~~~ 493 (497)
|++||+++|..++..
T Consensus 486 TlSEa~kEa~~aA~~ 500 (506)
T KOG1335|consen 486 TLSEAFKEANMAAYD 500 (506)
T ss_pred cHHHHHHHHHHHhhc
Confidence 999999999988665
No 50
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=7.1e-38 Score=320.00 Aligned_cols=331 Identities=23% Similarity=0.248 Sum_probs=231.6
Q ss_pred EeecccccccCcccccC--CCCcccccC--CCCchhhhccccccc------c--cccCCCCCcEEEEcCchHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVA------Y--SSFANENREFVIVGGGNAAGYAARTF 79 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~------~--~~~~~~~~~VvIIGgG~AGl~aA~~L 79 (497)
..+||||.++|++|+.+ |+..|.+.. .++++..+.++.... . .++....++|+||||||||+++|..|
T Consensus 80 ~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l 159 (457)
T PRK11749 80 LETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRL 159 (457)
T ss_pred HHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHH
Confidence 45799999999999988 988898653 677777776654321 1 22335568999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC
Q 010917 80 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 159 (497)
Q Consensus 80 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~ 159 (497)
+++|+ +|+|+|+++...-. +. +..+....+.+ ......+++++.|+++++++.+.
T Consensus 160 ~~~g~---~V~lie~~~~~gG~---l~--~gip~~~~~~~-----------~~~~~~~~l~~~gv~~~~~~~v~------ 214 (457)
T PRK11749 160 ARKGY---DVTIFEARDKAGGL---LR--YGIPEFRLPKD-----------IVDREVERLLKLGVEIRTNTEVG------ 214 (457)
T ss_pred HhCCC---eEEEEccCCCCCcE---ee--ccCCCccCCHH-----------HHHHHHHHHHHcCCEEEeCCEEC------
Confidence 99998 89999998653200 00 00010000101 11334566788899999886542
Q ss_pred CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHH---HhhccCCeEEEEcCCHHHHHHHHHHH
Q 010917 160 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAV 236 (497)
Q Consensus 160 ~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~ 236 (497)
+.+.+++.. +.||+||+|||+.....+.++|.+.+++.+...+....... ..+..+++|+|||+|++|+|+|..|.
T Consensus 215 ~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~ 293 (457)
T PRK11749 215 RDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAK 293 (457)
T ss_pred CccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHH
Confidence 223333333 68999999999963334456676667776653332222211 11236899999999999999999999
Q ss_pred hCCC-cEEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe-----------------
Q 010917 237 GWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL----------------- 297 (497)
Q Consensus 237 ~~g~-~Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~----------------- 297 (497)
+.|. +|+++++.+. .++. .. ...+.+++.||++++++.+.++..++ +.+..+.+
T Consensus 294 ~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~ 366 (457)
T PRK11749 294 RLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVP 366 (457)
T ss_pred HcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccC
Confidence 9998 8999998654 2221 11 23456789999999999999998543 32223332
Q ss_pred --CCCcEEEcCEEEEeccCcCCCcchh-hcCCccc-CCCEEecC-CCCCCCCcEEEeccccccCCccCCcccccccHHHH
Q 010917 298 --EDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 372 (497)
Q Consensus 298 --~~g~~i~~D~vv~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A 372 (497)
.+++++++|.||+++|++|+..++. ..++..+ +|++.||+ +++|+.|+|||+|||+..+. .+..|
T Consensus 367 ~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~----------~~~~A 436 (457)
T PRK11749 367 IEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAA----------TVVWA 436 (457)
T ss_pred CCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCch----------HHHHH
Confidence 1234799999999999999977764 4566554 57899998 89999999999999995321 45679
Q ss_pred HHHHHHHHHHHhc
Q 010917 373 RQSAQHCIKALLS 385 (497)
Q Consensus 373 ~~~g~~~a~~i~~ 385 (497)
+.+|+.+|.+|..
T Consensus 437 ~~~G~~aA~~I~~ 449 (457)
T PRK11749 437 VGDGKDAAEAIHE 449 (457)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988864
No 51
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=1.5e-37 Score=332.70 Aligned_cols=326 Identities=21% Similarity=0.231 Sum_probs=227.7
Q ss_pred EeecccccccCcccccCCCCcccccC--CCCchhhhccccccc--------cc-cc-CCCCCcEEEEcCchHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA--------YS-SF-ANENREFVIVGGGNAAGYAARTF 79 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~-~~-~~~~~~VvIIGgG~AGl~aA~~L 79 (497)
..+||||.+||++|+.+|..+|.|.. .+++|+.++|+..+. .. +. ....++|+|||||||||+||+.|
T Consensus 477 ~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~L 556 (1012)
T TIGR03315 477 YDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFL 556 (1012)
T ss_pred HHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHH
Confidence 46899999999999999999999965 899999998887642 11 11 23468999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC
Q 010917 80 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 159 (497)
Q Consensus 80 ~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~ 159 (497)
+++|+ +|+|+|+++..... +. +..+....+.+ ......+++.+.||++++++..
T Consensus 557 Ar~G~---~VTV~Ek~~~lGG~---l~--~~IP~~rlp~e-----------~l~~~ie~l~~~GVe~~~g~~~------- 610 (1012)
T TIGR03315 557 ARAGH---PVTVFEKKEKPGGV---VK--NIIPEFRISAE-----------SIQKDIELVKFHGVEFKYGCSP------- 610 (1012)
T ss_pred HHCCC---eEEEEecccccCce---ee--ecccccCCCHH-----------HHHHHHHHHHhcCcEEEEeccc-------
Confidence 99998 89999998653211 00 01111111100 0123345677789999887421
Q ss_pred CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHH---HhhccCCeEEEEcCCHHHHHHHHHHH
Q 010917 160 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAAV 236 (497)
Q Consensus 160 ~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~---~~~~~~~~vvVvG~G~~g~e~A~~l~ 236 (497)
.+.+++.....||+||||||+.+...+.++|.. +++.. .+.....+. .....+++|+|||||++|+|+|..+.
T Consensus 611 -d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~--avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~ 686 (1012)
T TIGR03315 611 -DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLK--SLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAAL 686 (1012)
T ss_pred -ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceee--HHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHH
Confidence 112223334679999999999864434444432 23322 112122211 11346899999999999999999988
Q ss_pred hC-CC-cEEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEE--------------EeCC
Q 010917 237 GW-KL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV--------------KLED 299 (497)
Q Consensus 237 ~~-g~-~Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v--------------~~~~ 299 (497)
+. |. +|+++++.+. .++. .. ..+.+. .+.||+++.+..+.+++ ++.+... ...+
T Consensus 687 Rl~Ga~kVtLVyRr~~~~Mpa-~~----eEl~~a-leeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~ 757 (1012)
T TIGR03315 687 RVPGVEKVTVVYRRTKRYMPA-SR----EELEEA-LEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGT 757 (1012)
T ss_pred HhCCCceEEEEEccCcccccc-CH----HHHHHH-HHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecC
Confidence 76 75 7999998763 3332 22 233333 35799999998888886 1222111 1112
Q ss_pred C--cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCC-CCCCCCcEEEeccccccCCccCCcccccccHHHHHHH
Q 010917 300 G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 375 (497)
Q Consensus 300 g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~ 375 (497)
| .++++|.||+|+|..|+.++++++++..+ +|++.||++ ++|+.|+|||+|||+..+. .+..|+.+
T Consensus 758 Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AIaq 827 (1012)
T TIGR03315 758 GETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAIAD 827 (1012)
T ss_pred CCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHHHH
Confidence 3 36999999999999999999998888865 578999986 8999999999999986543 45679999
Q ss_pred HHHHHHHHhcC
Q 010917 376 AQHCIKALLSA 386 (497)
Q Consensus 376 g~~~a~~i~~~ 386 (497)
|+.||.+|++.
T Consensus 828 Gr~AA~nIl~~ 838 (1012)
T TIGR03315 828 GRKAANAILSR 838 (1012)
T ss_pred HHHHHHHHhcc
Confidence 99999999864
No 52
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=2.5e-37 Score=333.11 Aligned_cols=332 Identities=21% Similarity=0.250 Sum_probs=239.6
Q ss_pred EeecccccccCccccc--CCCCcccccC---CCCchhhhccccccc---------ccccCCCCCcEEEEcCchHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAAR 77 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~~~VvIIGgG~AGl~aA~ 77 (497)
..+||||.+||++|+. +|..+|.+.. .++++..++|+..+. +.+.....++|+|||||||||+||.
T Consensus 369 ~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~ 448 (752)
T PRK12778 369 KETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAG 448 (752)
T ss_pred HhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHH
Confidence 4689999999999986 7888898864 478888888866532 1111345789999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEec
Q 010917 78 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI 157 (497)
Q Consensus 78 ~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~ 157 (497)
.|+++|+ +|+|+|+++...-. +. +-.+. .+++. .......+++++.|++++.++.+
T Consensus 449 ~l~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~rlp~-------~~~~~~~~~l~~~gv~~~~~~~v----- 504 (752)
T PRK12778 449 DLAKRGY---DVTVFEALHEIGGV---LK--YGIPE----FRLPK-------KIVDVEIENLKKLGVKFETDVIV----- 504 (752)
T ss_pred HHHHCCC---eEEEEecCCCCCCe---ee--ecCCC----CCCCH-------HHHHHHHHHHHHCCCEEECCCEE-----
Confidence 9999998 89999986542100 00 10111 11110 00123345678889999987644
Q ss_pred CCCEEEECCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHH--------hhccCCeEEEEcCCHHH
Q 010917 158 EKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIG 228 (497)
Q Consensus 158 ~~~~v~~~~g~~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvVvG~G~~g 228 (497)
.+.+++++.....||+||||||+. |+ .+.++|.+.+++++..++.....+.. ....+++|+|||+|++|
T Consensus 505 -~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a 582 (752)
T PRK12778 505 -GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA 582 (752)
T ss_pred -CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence 234444444456799999999994 65 45578888888887665544332211 12357999999999999
Q ss_pred HHHHHHHHhCCCc-EEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--------
Q 010917 229 MEVAAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-------- 298 (497)
Q Consensus 229 ~e~A~~l~~~g~~-Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-------- 298 (497)
+|+|..+.++|.+ ||++++.+. .++. .. ..+ +.+++.||++++++.+.++..++++++..+.+.
T Consensus 583 ~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----~~-~e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~ 656 (752)
T PRK12778 583 MDSARTAKRLGAERVTIVYRRSEEEMPA----RL-EEV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPD 656 (752)
T ss_pred HHHHHHHHHcCCCeEEEeeecCcccCCC----CH-HHH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcC
Confidence 9999999999997 999998754 2221 11 112 346888999999999999976556666665542
Q ss_pred -CC-----------cEEEcCEEEEeccCcCCCcchhhc-CCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCccc
Q 010917 299 -DG-----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364 (497)
Q Consensus 299 -~g-----------~~i~~D~vv~a~G~~p~~~~~~~~-gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~ 364 (497)
+| .++++|.||+|+|+.|+..++... ++..+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 657 ~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~------- 729 (752)
T PRK12778 657 ASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA------- 729 (752)
T ss_pred CCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH-------
Confidence 22 269999999999999998776654 67664 5789999999999999999999997432
Q ss_pred ccccHHHHHHHHHHHHHHHhc
Q 010917 365 RVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 365 ~~~~~~~A~~~g~~~a~~i~~ 385 (497)
.+..|+.+|+.||.+|..
T Consensus 730 ---~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 730 ---TVILAMGDGKRAAAAIDE 747 (752)
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 445688999999988853
No 53
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=3e-37 Score=315.84 Aligned_cols=337 Identities=20% Similarity=0.217 Sum_probs=235.4
Q ss_pred EeecccccccCcccccCCCCcccccC--CCCchhhhcccccccc---------cccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAARTFV 80 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~VvIIGgG~AGl~aA~~L~ 80 (497)
..+||||.+||++|+.+|..+|.|.. .++++..++|+..+.. .+.....++|+||||||||++||..|+
T Consensus 84 ~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~ 163 (471)
T PRK12810 84 HQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA 163 (471)
T ss_pred HHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence 46899999999999999999999975 7899999988766321 122234679999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917 81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 160 (497)
Q Consensus 81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~ 160 (497)
++|+ +|+|+|+++...-. +. +..+....+.. ......+++.+.|+++++++.+. .+...
T Consensus 164 ~~G~---~V~vie~~~~~GG~---l~--~gip~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~-~~~~~- 222 (471)
T PRK12810 164 RAGH---KVTVFERADRIGGL---LR--YGIPDFKLEKE-----------VIDRRIELMEAEGIEFRTNVEVG-KDITA- 222 (471)
T ss_pred hCCC---cEEEEecCCCCCce---ee--ecCCcccCCHH-----------HHHHHHHHHHhCCcEEEeCCEEC-CcCCH-
Confidence 9998 89999998654210 00 00010000100 01233466788899999986552 22111
Q ss_pred EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHH--HHH------hhccCCeEEEEcCCHHHHHHH
Q 010917 161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA--LIS------SLEKAKKVVVVGGGYIGMEVA 232 (497)
Q Consensus 161 ~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~--~~~------~~~~~~~vvVvG~G~~g~e~A 232 (497)
+.....||+||+|||+.....+.++|.+.+++++..++..... +.. ....+++|+|||+|++|+|+|
T Consensus 223 -----~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 223 -----EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred -----HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 1112579999999999833345567777788876533222111 111 123579999999999999999
Q ss_pred HHHHhCCC-cEEEEecCCcchhhccCH----HH-HHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----CC-
Q 010917 233 AAAVGWKL-DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----DG- 300 (497)
Q Consensus 233 ~~l~~~g~-~Vtlv~~~~~~~~~~~~~----~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----~g- 300 (497)
..+.+.|. +|++++..+.......+. .. .....+.+++.||+++++..++++.. +++++..|.+. +|
T Consensus 298 ~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~ 376 (471)
T PRK12810 298 GTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGD 376 (471)
T ss_pred HHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCC
Confidence 99888886 788776554332211010 00 11134567889999999999999974 36666655432 22
Q ss_pred --------cEEEcCEEEEeccCcCCC-cchhhcCCccc-CCCEEec-CCCCCCCCcEEEeccccccCCccCCcccccccH
Q 010917 301 --------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 369 (497)
Q Consensus 301 --------~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~-~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~ 369 (497)
+++++|.||+|+|.+|+. .++++++++.+ +|.+.+| ++++|+.|+|||+|||+..+. .+
T Consensus 377 ~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~~ 446 (471)
T PRK12810 377 FEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------LV 446 (471)
T ss_pred ccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------hH
Confidence 479999999999999985 57888888775 5779998 799999999999999997432 34
Q ss_pred HHHHHHHHHHHHHHhc
Q 010917 370 DHARQSAQHCIKALLS 385 (497)
Q Consensus 370 ~~A~~~g~~~a~~i~~ 385 (497)
..|+.+|+.||.+|..
T Consensus 447 ~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 447 VWAIAEGRQAARAIDA 462 (471)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688899999888853
No 54
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=2.2e-36 Score=308.19 Aligned_cols=332 Identities=20% Similarity=0.212 Sum_probs=237.1
Q ss_pred EeecccccccCcccc--cCCCCcccccC--CCCchhhhcccccccc---------cccCCCCCcEEEEcCchHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAART 78 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~VvIIGgG~AGl~aA~~ 78 (497)
..+||||.+||++|+ .+|..+|.|.. .++++..++|+..+.. .+...+.++|+||||||+|++||..
T Consensus 80 ~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~ 159 (467)
T TIGR01318 80 HQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI 159 (467)
T ss_pred HHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence 568999999999998 58999999975 7999999988875331 1112356899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC
Q 010917 79 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 158 (497)
Q Consensus 79 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~ 158 (497)
|+++|+ +|+++|+.+... +++.. .....+++ .+......+++++.|+++++++.+..
T Consensus 160 l~~~G~---~V~i~e~~~~~g--------G~l~~-gip~~~~~-------~~~~~~~~~~~~~~Gv~~~~~~~v~~---- 216 (467)
T TIGR01318 160 LARAGV---QVVVFDRHPEIG--------GLLTF-GIPSFKLD-------KAVLSRRREIFTAMGIEFHLNCEVGR---- 216 (467)
T ss_pred HHHcCC---eEEEEecCCCCC--------ceeee-cCccccCC-------HHHHHHHHHHHHHCCCEEECCCEeCC----
Confidence 999998 799999986532 11110 00000110 00012345677889999999876621
Q ss_pred CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH--HHHHHh---------hccCCeEEEEcCCHH
Q 010917 159 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALISS---------LEKAKKVVVVGGGYI 227 (497)
Q Consensus 159 ~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~~---------~~~~~~vvVvG~G~~ 227 (497)
.+.+++ ....||+||+|||+.+...+.++|.+.+|+++..++... ..+... ...+++++|+|+|++
T Consensus 217 --~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 293 (467)
T TIGR01318 217 --DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT 293 (467)
T ss_pred --ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence 111111 124799999999998754456678888888865432211 111100 124689999999999
Q ss_pred HHHHHHHHHhCCC-cEEEEecCCcc-hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 010917 228 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------- 298 (497)
Q Consensus 228 g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~------- 298 (497)
|+++|..+.++|. +||++++.+.. ++. .+. ..+.+++.||++++++.+.++..++++++..+++.
T Consensus 294 a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~-----e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 367 (467)
T TIGR01318 294 AMDCVRTAIRLGAASVTCAYRRDEANMPG-SRR-----EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEP 367 (467)
T ss_pred HHHHHHHHHHcCCCeEEEEEecCcccCCC-CHH-----HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEeccc
Confidence 9999999999995 79999987653 322 122 22446789999999999999975555666555431
Q ss_pred --C-----------CcEEEcCEEEEeccCcCCC-cchhhcCCccc-CCCEEec----CCCCCCCCcEEEeccccccCCcc
Q 010917 299 --D-----------GSTIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLKM 359 (497)
Q Consensus 299 --~-----------g~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~-~g~i~vd----~~~~t~~~~iya~GD~~~~~~~~ 359 (497)
+ .+++++|.||+++|++|+. .+++.++++.+ +|++.|| .+++|+.|+|||+|||+..+.
T Consensus 368 ~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~-- 445 (467)
T TIGR01318 368 DADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD-- 445 (467)
T ss_pred CCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc--
Confidence 1 2379999999999999984 56777777765 5779999 688999999999999987542
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc
Q 010917 360 YDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 360 ~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
.+..|+.+|+.||.+|..
T Consensus 446 --------~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 446 --------LVVTAVAEGRQAAQGILD 463 (467)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 345699999999998863
No 55
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=319.11 Aligned_cols=331 Identities=22% Similarity=0.256 Sum_probs=230.4
Q ss_pred EeecccccccCcccccCCCCcccccC--CCCchhhhccccccc---------ccccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAARTFV 80 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~VvIIGgG~AGl~aA~~L~ 80 (497)
..+||||.++|++|+.+|+..|.|.. .++.+..++|+..+. +.+.....++|+||||||||++||..|+
T Consensus 134 ~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La 213 (652)
T PRK12814 134 KETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLL 213 (652)
T ss_pred HhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 46899999999999999999998865 677787777776532 1112335689999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917 81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 160 (497)
Q Consensus 81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~ 160 (497)
+.|+ +|+|+|+++...-. +. +..+....+..+ .....+.+.+.|+++++++.+ ..+
T Consensus 214 ~~G~---~Vtv~e~~~~~GG~---l~--~gip~~~~~~~~-----------~~~~~~~l~~~Gv~i~~~~~v-~~d---- 269 (652)
T PRK12814 214 RKGH---DVTIFDANEQAGGM---MR--YGIPRFRLPESV-----------IDADIAPLRAMGAEFRFNTVF-GRD---- 269 (652)
T ss_pred HCCC---cEEEEecCCCCCce---ee--ecCCCCCCCHHH-----------HHHHHHHHHHcCCEEEeCCcc-cCc----
Confidence 9998 89999998654210 00 001101111100 122345667889999987653 222
Q ss_pred EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCC
Q 010917 161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 240 (497)
Q Consensus 161 ~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~ 240 (497)
+.+++.. ..||+||+|||+.+...+.++|.+.++++...++............+++|+|||+|++|+|+|..+.++|.
T Consensus 270 -v~~~~~~-~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga 347 (652)
T PRK12814 270 -ITLEELQ-KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGA 347 (652)
T ss_pred -cCHHHHH-hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence 1222211 35999999999986444556777777776532222211111124568999999999999999999999986
Q ss_pred -cEEEEecCCc-chhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCc-EEEEEeC---------------CC--
Q 010917 241 -DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR-VAAVKLE---------------DG-- 300 (497)
Q Consensus 241 -~Vtlv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~-v~~v~~~---------------~g-- 300 (497)
+|+++++.+. .++. .+ ..+.+. .+.||+++++..+.++...+++. +..+.+. +|
T Consensus 348 ~~Vtlv~r~~~~~mpa-~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~ 421 (652)
T PRK12814 348 ESVTILYRRTREEMPA-NR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSE 421 (652)
T ss_pred CeEEEeeecCcccCCC-CH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCce
Confidence 5999998764 3332 12 223333 46799999999999987542221 2222211 12
Q ss_pred cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecC-CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917 301 STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 378 (497)
Q Consensus 301 ~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 378 (497)
.++++|.||+++|..|+.++++..++..+ +|++.||+ +++|+.|+|||+|||+..+. .+..|+.+|+.
T Consensus 422 ~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G~~ 491 (652)
T PRK12814 422 FTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQGKR 491 (652)
T ss_pred EEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHHHH
Confidence 26999999999999999999988888775 57899997 68999999999999987542 45568889999
Q ss_pred HHHHHh
Q 010917 379 CIKALL 384 (497)
Q Consensus 379 ~a~~i~ 384 (497)
||.+|.
T Consensus 492 AA~~I~ 497 (652)
T PRK12814 492 AAHAID 497 (652)
T ss_pred HHHHHH
Confidence 888874
No 56
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=329.91 Aligned_cols=332 Identities=17% Similarity=0.198 Sum_probs=234.7
Q ss_pred EeecccccccCccccc--CCCCcccccC--CCCchhhhcccccccc-------cccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY-------SSFANENREFVIVGGGNAAGYAARTFV 80 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~~~VvIIGgG~AGl~aA~~L~ 80 (497)
..+||||.+||++|+. +|..+|.|.. .+++|..++|+..+.. .+...+.++|+|||||||||+||..|+
T Consensus 371 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La 450 (1006)
T PRK12775 371 YEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLV 450 (1006)
T ss_pred HHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 4689999999999997 8999999965 7899999988865431 111234689999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917 81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 160 (497)
Q Consensus 81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~ 160 (497)
++|+ +|+|+|+.+...- .+. +-.+....+.+ ......+++.+.|+++++++.+ . +
T Consensus 451 ~~G~---~VtV~E~~~~~GG---~l~--~gip~~rl~~e-----------~~~~~~~~l~~~Gv~~~~~~~v-g-----~ 505 (1006)
T PRK12775 451 KYGV---DVTVYEALHVVGG---VLQ--YGIPSFRLPRD-----------IIDREVQRLVDIGVKIETNKVI-G-----K 505 (1006)
T ss_pred HcCC---cEEEEecCCCCcc---eee--ccCCccCCCHH-----------HHHHHHHHHHHCCCEEEeCCcc-C-----C
Confidence 9998 8999998765321 000 00111111111 1234456788899999998543 1 1
Q ss_pred EEEECCCc-EEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHHHHHHH---------hhccCCeEEEEcCCHHHH
Q 010917 161 TLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIGM 229 (497)
Q Consensus 161 ~v~~~~g~-~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvVvG~G~~g~ 229 (497)
.+++++-. ...||+||||||+. |+ .+.+||.+.+++++..++.+...+.. ....+++|+|||||++|+
T Consensus 506 ~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~ 584 (1006)
T PRK12775 506 TFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAM 584 (1006)
T ss_pred ccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHH
Confidence 22222111 24699999999995 55 45678888888887655544433211 123689999999999999
Q ss_pred HHHHHHHhCCCc-EEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC----------
Q 010917 230 EVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---------- 298 (497)
Q Consensus 230 e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---------- 298 (497)
++|..+.++|.+ |+++.+....- ++.. ... .+.+++.||++++++.+.++..+++|++..+.+.
T Consensus 585 D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~-~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~ 659 (1006)
T PRK12775 585 DCLRVAKRLGAPTVRCVYRRSEAE---APAR-IEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEK 659 (1006)
T ss_pred HHHHHHHHcCCCEEEEEeecCccc---CCCC-HHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCC
Confidence 999999999985 78887654321 1111 111 2456789999999999999976556777665431
Q ss_pred -------CC--cEEEcCEEEEeccCcCCCcchhh-cCCccc-CCCEEecC-----CCCCCCCcEEEeccccccCCccCCc
Q 010917 299 -------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMYDR 362 (497)
Q Consensus 299 -------~g--~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~g~ 362 (497)
+| .++++|.||+|+|+.|+..++.. .++..+ +|.|.+|+ +++|+.|+|||+|||+..+.
T Consensus 660 Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~----- 734 (1006)
T PRK12775 660 GRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA----- 734 (1006)
T ss_pred CCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc-----
Confidence 12 26999999999999999877654 356654 57799986 78999999999999987542
Q ss_pred ccccccHHHHHHHHHHHHHHHh
Q 010917 363 TARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 363 ~~~~~~~~~A~~~g~~~a~~i~ 384 (497)
.+..|+.+|+.||.+|.
T Consensus 735 -----~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 735 -----TVILAMGAGRRAARSIA 751 (1006)
T ss_pred -----HHHHHHHHHHHHHHHHH
Confidence 34457788888887764
No 57
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=7e-35 Score=283.07 Aligned_cols=284 Identities=23% Similarity=0.325 Sum_probs=207.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCHhHH
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY 139 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 139 (497)
+||+|||||+||++||..|++.|+ +|+|||+++.... +... .....+|++.. ..+.+....+.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg~--------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGGQ--------LTTT--TEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCcc--------eeec--ccccccCCCCCCCChHHHHHHHHHHH
Confidence 589999999999999999999988 8999998752100 0000 00011111110 01111223455667
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCC---CcEEEecCHHHHHHHHHhhc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE 214 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~ 214 (497)
++.++++++ ++|+.+++..+ .+.+.++.++.||+||+|||+.+.. +.+||.+. .++++..... ....
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~-~~i~g~~~~~~~~~~~~~~~~------~~~~ 139 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARK-LGIPGEDEFLGRGVSYCATCD------GPFF 139 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCccc-CCCCChhhcCCccEEEeeecC------hhhc
Confidence 888999998 79999988765 5666777889999999999998863 44555321 2333332111 1234
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVA 293 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~ 293 (497)
.+++|+|+|+|.+|+|+|..|++.+.+|+++++.+.+.. . ..+.+.++++ ||++++++++++++.+ +.+.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~ 210 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVGD--NKVE 210 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEcc--CcEE
Confidence 678999999999999999999999999999999876532 2 3455667777 9999999999999843 3444
Q ss_pred EEEeC-----CCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccc
Q 010917 294 AVKLE-----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 367 (497)
Q Consensus 294 ~v~~~-----~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~ 367 (497)
.+.+. +++++++|.+|+|+|++|+.++++.+ +..+ +|++.||++++|++||||++|||+.... .
T Consensus 211 ~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~---------~ 280 (300)
T TIGR01292 211 GVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY---------R 280 (300)
T ss_pred EEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch---------h
Confidence 45442 23579999999999999999888877 5543 5789999999999999999999997421 2
Q ss_pred cHHHHHHHHHHHHHHHh
Q 010917 368 HVDHARQSAQHCIKALL 384 (497)
Q Consensus 368 ~~~~A~~~g~~~a~~i~ 384 (497)
.+..|+.+|+.||.+|.
T Consensus 281 ~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 281 QAVTAAGDGCIAALSAE 297 (300)
T ss_pred hhhhhhhhHHHHHHHHH
Confidence 56679999999999886
No 58
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=5.5e-35 Score=310.32 Aligned_cols=332 Identities=20% Similarity=0.222 Sum_probs=233.7
Q ss_pred EeecccccccCcccc--cCCCCcccccC--CCCchhhhcccccccc---------cccCCCCCcEEEEcCchHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAART 78 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~VvIIGgG~AGl~aA~~ 78 (497)
..+||||.++|++|+ .+|..+|.+.. .++.|..++|+..+.. .+...+.++|+|||||||||+||..
T Consensus 266 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~ 345 (654)
T PRK12769 266 HQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADV 345 (654)
T ss_pred HHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHH
Confidence 457999999999998 47999998864 7999999888875431 1112356899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC
Q 010917 79 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 158 (497)
Q Consensus 79 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~ 158 (497)
|++.|+ +|+|+|+.+... +++.. .....+++ .+...+..+++++.|+++++++.+.. +
T Consensus 346 L~~~G~---~V~V~E~~~~~G--------G~l~~-gip~~~l~-------~~~~~~~~~~~~~~Gv~~~~~~~v~~-~-- 403 (654)
T PRK12769 346 LARNGV---AVTVYDRHPEIG--------GLLTF-GIPAFKLD-------KSLLARRREIFSAMGIEFELNCEVGK-D-- 403 (654)
T ss_pred HHHCCC---eEEEEecCCCCC--------ceeee-cCCCccCC-------HHHHHHHHHHHHHCCeEEECCCEeCC-c--
Confidence 999998 799999876532 11110 00000111 00012234667788999998876521 1
Q ss_pred CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHH--HHHHHHH---------hhccCCeEEEEcCCHH
Q 010917 159 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS---------SLEKAKKVVVVGGGYI 227 (497)
Q Consensus 159 ~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~--~~~~~~~---------~~~~~~~vvVvG~G~~ 227 (497)
+.+++. ...||+|++|||+.....+.+++.+.+|++....+. ....... ....+++|+|||+|++
T Consensus 404 ---i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 479 (654)
T PRK12769 404 ---ISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDT 479 (654)
T ss_pred ---CCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHH
Confidence 111111 147999999999975434456777778877532211 1111110 0124789999999999
Q ss_pred HHHHHHHHHhCCC-cEEEEecCCcc-hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-------
Q 010917 228 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------- 298 (497)
Q Consensus 228 g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~------- 298 (497)
|+|+|..+.++|. +|+++++.+.. ++. .+ ...+.+++.||+++++..++++..++++++.+|++.
T Consensus 480 a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~--~~----~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 553 (654)
T PRK12769 480 AMDCVRTALRHGASNVTCAYRRDEANMPG--SK----KEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEP 553 (654)
T ss_pred HHHHHHHHHHcCCCeEEEeEecCCCCCCC--CH----HHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCc
Confidence 9999999999986 69999987653 321 22 223557889999999999999975556776655541
Q ss_pred --CC-----------cEEEcCEEEEeccCcCCC-cchhhcCCccc-CCCEEecC----CCCCCCCcEEEeccccccCCcc
Q 010917 299 --DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKM 359 (497)
Q Consensus 299 --~g-----------~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~ 359 (497)
+| .++++|.||+|+|+.|+. .++++++++.+ +|.|.+|+ +++|+.|+|||+||++..+.
T Consensus 554 ~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~-- 631 (654)
T PRK12769 554 DAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD-- 631 (654)
T ss_pred CCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc--
Confidence 22 269999999999999985 56788888875 57789986 48999999999999987543
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc
Q 010917 360 YDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 360 ~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
.+..|+.+|+.||.+|..
T Consensus 632 --------~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 632 --------LVVTAMAEGRHAAQGIID 649 (654)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 455699999999998864
No 59
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=100.00 E-value=6.7e-35 Score=298.43 Aligned_cols=337 Identities=19% Similarity=0.236 Sum_probs=230.7
Q ss_pred EeecccccccCcccccCCCCcccccC--CCCchhhhcccccccc------c---ccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV 80 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~VvIIGgG~AGl~aA~~L~ 80 (497)
..+||||.++|++|+.+|..+|.+.. .++++..++|+..+.. . +.....++|+|||||+||++||..|+
T Consensus 84 ~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~ 163 (485)
T TIGR01317 84 HATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN 163 (485)
T ss_pred HhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence 46899999999999999999999965 7888888877764321 1 11234579999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917 81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 160 (497)
Q Consensus 81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~ 160 (497)
++|+ +|+|+|+++..... +. +..+.......+ .....+++++.|+++++++.+. .+...
T Consensus 164 ~~g~---~V~v~e~~~~~gG~---l~--~gip~~~~~~~~-----------~~~~~~~~~~~Gv~~~~~~~v~-~~~~~- 222 (485)
T TIGR01317 164 RAGH---TVTVFEREDRCGGL---LM--YGIPNMKLDKAI-----------VDRRIDLLSAEGIDFVTNTEIG-VDISA- 222 (485)
T ss_pred HcCC---eEEEEecCCCCCce---ee--ccCCCccCCHHH-----------HHHHHHHHHhCCCEEECCCEeC-CccCH-
Confidence 9998 89999998753210 00 000100000000 1233467788999999987663 11111
Q ss_pred EEEECCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHH-HHHHH---------HhhccCCeEEEEcCCHHHH
Q 010917 161 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVAD-ADALI---------SSLEKAKKVVVVGGGYIGM 229 (497)
Q Consensus 161 ~v~~~~g~~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~-~~~~~---------~~~~~~~~vvVvG~G~~g~ 229 (497)
+.....||+|++|||+. +. .+.++|.+.+|+++...+.. ..... .....+++|+|||+|++|+
T Consensus 223 -----~~~~~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~ 296 (485)
T TIGR01317 223 -----DELKEQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGA 296 (485)
T ss_pred -----HHHHhhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHH
Confidence 11235799999999998 55 45678887888887543322 11111 1113579999999999999
Q ss_pred HHHHHHHhCCC-cEEEEecCCcchhhccC----H------HHHHHHHHHHHHCCcEE-EcCCeEEEEEeCCCCcEEEEEe
Q 010917 230 EVAAAAVGWKL-DTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQNGVKF-VKGASIKNLEAGSDGRVAAVKL 297 (497)
Q Consensus 230 e~A~~l~~~g~-~Vtlv~~~~~~~~~~~~----~------~~~~~~~~~l~~~GV~i-~~~~~v~~i~~~~~~~v~~v~~ 297 (497)
|+|..+.++|. +|+++++.+..+..... + +......+..+..||.+ +++..+.+|..++++++..+.+
T Consensus 297 d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~ 376 (485)
T TIGR01317 297 DCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRT 376 (485)
T ss_pred HHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEE
Confidence 99888877774 79999988765532111 0 11222333344457654 5677788887544466666543
Q ss_pred --------CCC-----------cEEEcCEEEEeccCc-CCCcchhhcCCccc-CCCEE-ecCCCCCCCCcEEEecccccc
Q 010917 298 --------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQ-VDGQFRTRMPGIFAIGDVAAF 355 (497)
Q Consensus 298 --------~~g-----------~~i~~D~vv~a~G~~-p~~~~~~~~gl~~~-~g~i~-vd~~~~t~~~~iya~GD~~~~ 355 (497)
++| +++++|.||+|+|.. |+..+++.++++.+ +|.+. +|++++|+.|+|||+|||+..
T Consensus 377 ~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g 456 (485)
T TIGR01317 377 VRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG 456 (485)
T ss_pred EEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC
Confidence 133 279999999999996 88888988888754 56674 467899999999999999864
Q ss_pred CCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917 356 PLKMYDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 356 ~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
+. ....|+.+|+.||.+|..
T Consensus 457 ~~----------~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 457 QS----------LIVWAINEGRKAAAAVDR 476 (485)
T ss_pred cH----------HHHHHHHHHHHHHHHHHH
Confidence 32 344588888888888753
No 60
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=8.8e-35 Score=300.65 Aligned_cols=287 Identities=25% Similarity=0.353 Sum_probs=205.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 136 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (497)
...+||+||||||||++||..|++.|+ +++||++.... .+....+ ..+.+.....+..+...+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~GG~~~~~~~~------------~~~~~~~~~~~~~l~~~l~ 274 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIGGQVKDTVGI------------ENLISVPYTTGSQLAANLE 274 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCccccCcCc------------ccccccCCCCHHHHHHHHH
Confidence 446899999999999999999999998 89999753110 0110010 0111111111111223455
Q ss_pred hHHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 010917 137 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 211 (497)
Q Consensus 137 ~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~ 211 (497)
+++++++++++.+++|+.++.+. ..+.+.++..+.||++|+|||+.++. +.++|.. ..++.+..... .
T Consensus 275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~~------~ 347 (515)
T TIGR03140 275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHCD------G 347 (515)
T ss_pred HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeeccC------h
Confidence 66777899999999999998765 46677788889999999999999864 4455531 23444432211 1
Q ss_pred hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCC
Q 010917 212 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDG 290 (497)
Q Consensus 212 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~ 290 (497)
....+++|+|||+|++|+|+|..|+..+.+||++++.+.+.. ...+.+.+++ .||++++++.+++++.+ ++
T Consensus 348 ~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~ 419 (515)
T TIGR03140 348 PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVGD-GD 419 (515)
T ss_pred hhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEcC-CC
Confidence 234689999999999999999999999999999998876643 2345666766 69999999999999743 45
Q ss_pred cEEEEEeCC---C--cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCccc
Q 010917 291 RVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 364 (497)
Q Consensus 291 ~v~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~ 364 (497)
++..+.+.+ + +++++|.|++++|.+|++++++.. ++.+ +|+|.||+++||++|+|||+|||+..+...
T Consensus 420 ~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~~~----- 493 (515)
T TIGR03140 420 KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYKQ----- 493 (515)
T ss_pred EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCccce-----
Confidence 665666643 2 479999999999999999998776 6654 578999999999999999999999865421
Q ss_pred ccccHHHHHHHHHHHHHHHh
Q 010917 365 RVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 365 ~~~~~~~A~~~g~~~a~~i~ 384 (497)
+..|+.+|..||.++.
T Consensus 494 ----~~~A~~~G~~Aa~~i~ 509 (515)
T TIGR03140 494 ----IIIAMGEGAKAALSAF 509 (515)
T ss_pred ----EEEEEccHHHHHHHHH
Confidence 1125556666665554
No 61
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.1e-34 Score=283.83 Aligned_cols=273 Identities=20% Similarity=0.278 Sum_probs=193.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 136 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 136 (497)
...+||+|||||||||+||..|+++|+ ++++||.....+.. ... .....+++... ..+.....++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 70 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--TTT--------TEVENWPGDPNDLTGPLLMERMH 70 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCce--ecC--------ceECCCCCCCCCCCHHHHHHHHH
Confidence 346899999999999999999999998 79999854321110 000 00111111100 00011112334
Q ss_pred hHHHHcCcEEEeCCcEEEEecCCCEEEEC-CCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHh
Q 010917 137 EWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 212 (497)
Q Consensus 137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~ 212 (497)
+....++++++.+ +|..++...+.+.+. +...+.||+||+|||+.|+. |.+||.+ ..++++..... ..
T Consensus 71 ~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~~~~------~~ 142 (321)
T PRK10262 71 EHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACATCD------GF 142 (321)
T ss_pred HHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEeecCC------HH
Confidence 4556677787764 677788766654432 23368999999999999874 5555532 23344332211 12
Q ss_pred hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE
Q 010917 213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 292 (497)
Q Consensus 213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v 292 (497)
...+++++|||+|++|+|+|..|++++.+|+++++.+.+. .++.+.+.+++.+++.||++++++.+++++.+ ++.+
T Consensus 143 ~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~ 218 (321)
T PRK10262 143 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGV 218 (321)
T ss_pred HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-CccE
Confidence 3468999999999999999999999999999999987653 35667788888999999999999999999853 3344
Q ss_pred EEEEeCCC------cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecC-----CCCCCCCcEEEeccccccC
Q 010917 293 AAVKLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFP 356 (497)
Q Consensus 293 ~~v~~~~g------~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~ 356 (497)
..+++.++ +++++|.|++++|.+||..++.. ++..++|+|.||+ +++|+.|+|||+|||+..+
T Consensus 219 ~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~ 292 (321)
T PRK10262 219 TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI 292 (321)
T ss_pred EEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCC
Confidence 45555432 47999999999999999887764 4666678899997 7899999999999999754
No 62
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-33 Score=254.59 Aligned_cols=375 Identities=21% Similarity=0.326 Sum_probs=257.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCCCc-----------------cccCCCC-CC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPALTK-----------------GYLFPLD-KK 116 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~---~~~~l~~-----------------~~l~~~~-~~ 116 (497)
...+|++|||||-+|+++|+..++.|. ++.|+|......- .+-..++ .|-++.. ..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG 94 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence 346899999999999999999999987 8999997732110 0000011 1111110 00
Q ss_pred CCCCCCCccccCCCCCCCCHhHH----HHcCcEEEeCCcEEEEecCCCEEEECCCc--EEEeccEEeccCCCCCcCCCCC
Q 010917 117 PARLPGFHTCVGSGGERQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI 190 (497)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lvlAtG~~~~~~~~~~ 190 (497)
..++.-+.. -...+..++...| .+.+|+++.+ +..-+++..-.|...++. .+++.+++||||++|. .|.+|
T Consensus 95 ~fdW~~ik~-krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIp 171 (478)
T KOG0405|consen 95 SFDWKVIKQ-KRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIP 171 (478)
T ss_pred CCcHHHHHh-hhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCC
Confidence 011100000 0000111222222 3346777765 444455555567777774 3688999999999997 57766
Q ss_pred CCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH
Q 010917 191 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 270 (497)
Q Consensus 191 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (497)
|.+ .. .+++.+++....+++++|+|+|++++|+|..++.+|.+++++.|.+.++.. ||+.+++.+.+.++.
T Consensus 172 G~E-----~g---idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~~ 242 (478)
T KOG0405|consen 172 GAE-----LG---IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLEG 242 (478)
T ss_pred chh-----hc---cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhhh
Confidence 543 22 245666666678999999999999999999999999999999999999964 899999999999999
Q ss_pred CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcc--hhhcCCccc-CCCEEecCCCCCCCCcEE
Q 010917 271 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF 347 (497)
Q Consensus 271 ~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~iy 347 (497)
+||++|.+++++++.+..++... +....|+...+|.++||+|+.||+.- +++.|++.+ +|.|.||++.+||+|+||
T Consensus 243 ~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~ 321 (478)
T KOG0405|consen 243 RGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIW 321 (478)
T ss_pred cceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceE
Confidence 99999999999999887666543 44556665669999999999999864 678888876 677999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---CCCCCCCCceeeeccccCCCCcceeeEEeecCCCc--
Q 010917 348 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-- 422 (497)
Q Consensus 348 a~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~---~~~~~~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~-- 422 (497)
++||+++- ++....|..+|+..++.+.++. ...|..+|. .+|.++. +..+|..+.+
T Consensus 322 avGDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~---vVFshP~------igtVGLtE~EAi 382 (478)
T KOG0405|consen 322 AVGDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYENVPC---VVFSHPP------IGTVGLTEEEAI 382 (478)
T ss_pred EeccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccccCce---EEEecCC------cccccCCHHHHH
Confidence 99999974 2344568999999999999743 246777874 5665543 2234443321
Q ss_pred -------E-EEEccC-----------CCcEEEEEE--ECCEEEEEEeecCChHHhh-HHHHHHhCCC
Q 010917 423 -------T-IEIGNF-----------DPKIATFWI--DSGKLKGVLVESGSPEEFQ-LLPTLARSQP 467 (497)
Q Consensus 423 -------~-~~~~~~-----------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~ 467 (497)
+ ++...| +.-+.++.. ++++++|+++++.+..++. -+.-.++.+.
T Consensus 383 ekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGa 449 (478)
T KOG0405|consen 383 EKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGA 449 (478)
T ss_pred HHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCc
Confidence 1 112222 122344444 4689999998777665543 3334455553
No 63
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=6.2e-34 Score=300.88 Aligned_cols=332 Identities=18% Similarity=0.211 Sum_probs=233.6
Q ss_pred EeecccccccCcccc--cCCCCcccccC--CCCchhhhcccccccc---------cccCCCCCcEEEEcCchHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAART 78 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~VvIIGgG~AGl~aA~~ 78 (497)
..+||||.++|++|+ .+|..+|.+.. .++++..++|+..+.. .+...+.++|+|||||||||++|..
T Consensus 249 ~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~ 328 (639)
T PRK12809 249 HQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADI 328 (639)
T ss_pred HHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHH
Confidence 467999999999998 57999998864 7999999988766321 1123357899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC
Q 010917 79 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 158 (497)
Q Consensus 79 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~ 158 (497)
|++.|+ +|+++|+++... +.+.- ...+.+++. .......+++++.|+++++++++..
T Consensus 329 L~~~G~---~Vtv~e~~~~~G--------G~l~~-gip~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~~---- 385 (639)
T PRK12809 329 LARAGV---QVDVFDRHPEIG--------GMLTF-GIPPFKLDK-------TVLSQRREIFTAMGIDFHLNCEIGR---- 385 (639)
T ss_pred HHHcCC---cEEEEeCCCCCC--------Ceeec-cCCcccCCH-------HHHHHHHHHHHHCCeEEEcCCccCC----
Confidence 999998 799999987532 11100 000111110 0012234677889999999876521
Q ss_pred CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH--HHHHH---------hhccCCeEEEEcCCHH
Q 010917 159 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGYI 227 (497)
Q Consensus 159 ~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~---------~~~~~~~vvVvG~G~~ 227 (497)
.+.+++ ....||+|++|||+.+...+.+++.+.+|+++...+... ..+.. ....+++|+|+|+|.+
T Consensus 386 --~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~ 462 (639)
T PRK12809 386 --DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDT 462 (639)
T ss_pred --cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHH
Confidence 111211 124799999999998654455677777887763222211 11110 0125789999999999
Q ss_pred HHHHHHHHHhCCC-cEEEEecCCcc-hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---C----
Q 010917 228 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---E---- 298 (497)
Q Consensus 228 g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~---- 298 (497)
++++|..+.++|. +||++++++.. ++. ... .+ ..+++.||++++++.+++|..++++++..+.+ .
T Consensus 463 a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~----e~-~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 536 (639)
T PRK12809 463 TMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK----EV-VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEP 536 (639)
T ss_pred HHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH----HH-HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCc
Confidence 9999999989985 79999987644 321 111 22 23578899999999999997655666665532 1
Q ss_pred --CC-----------cEEEcCEEEEeccCcCCC-cchhhcCCccc-CCCEEecC----CCCCCCCcEEEeccccccCCcc
Q 010917 299 --DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPLKM 359 (497)
Q Consensus 299 --~g-----------~~i~~D~vv~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~iya~GD~~~~~~~~ 359 (497)
+| .++++|.||+|+|+.|+. .++++++++.+ +|.|.+|+ +++|+.|+|||+|||+..+.
T Consensus 537 ~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~-- 614 (639)
T PRK12809 537 GPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD-- 614 (639)
T ss_pred CCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch--
Confidence 12 369999999999999974 56777888765 57788885 48999999999999987543
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc
Q 010917 360 YDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 360 ~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
.+..|+.+|+.||.+|..
T Consensus 615 --------~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 615 --------LVVTAMAAGRQAARDMLT 632 (639)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 445689999999988864
No 64
>PRK13984 putative oxidoreductase; Provisional
Probab=100.00 E-value=5.6e-34 Score=301.07 Aligned_cols=328 Identities=20% Similarity=0.227 Sum_probs=223.3
Q ss_pred eecccccccCcccccCCCCcccccC--CCCchhhhcccccccc----------cccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917 13 VSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY----------SSFANENREFVIVGGGNAAGYAARTFV 80 (497)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~VvIIGgG~AGl~aA~~L~ 80 (497)
..||||..||++|+.+|..+|.+.. .++.+..++|+..+.. .+.....++|+|||+|+||+++|..|+
T Consensus 224 ~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~ 303 (604)
T PRK13984 224 KTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLA 303 (604)
T ss_pred hcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHH
Confidence 3799999999999999999999964 6777777665443221 112345789999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC
Q 010917 81 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 160 (497)
Q Consensus 81 ~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~ 160 (497)
++|+ +|+|+|+++...-. +. +..+....+.++ .....+++++.|++++.++.|.. +
T Consensus 304 ~~G~---~v~vie~~~~~gG~---~~--~~i~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~-~---- 359 (604)
T PRK13984 304 TMGY---EVTVYESLSKPGGV---MR--YGIPSYRLPDEA-----------LDKDIAFIEALGVKIHLNTRVGK-D---- 359 (604)
T ss_pred HCCC---eEEEEecCCCCCce---Ee--ecCCcccCCHHH-----------HHHHHHHHHHCCcEEECCCEeCC-c----
Confidence 9998 89999998753210 00 001111111100 12234677889999999876631 1
Q ss_pred EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh-------ccCCeEEEEcCCHHHHHHHH
Q 010917 161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVAA 233 (497)
Q Consensus 161 ~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~-------~~~~~vvVvG~G~~g~e~A~ 233 (497)
+..++ ....||+||+|||+.+.+.+.++|.+.++++... .....+...+ ..+++|+|||||++|+|+|.
T Consensus 360 -~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~--~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~ 435 (604)
T PRK13984 360 -IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL--PLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIAR 435 (604)
T ss_pred -CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHH--HHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHH
Confidence 11111 1357999999999975334566777677766532 2222222111 23689999999999999999
Q ss_pred HHHhCCC------cEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---------
Q 010917 234 AAVGWKL------DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------- 298 (497)
Q Consensus 234 ~l~~~g~------~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--------- 298 (497)
.+.+++. +|+++...... . .++... ..+.+ +.+.||+++++..+.++.. +++++..+.+.
T Consensus 436 ~l~r~~~~~~g~~~V~v~~~~r~~-~-~~~~~~-~e~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~ 510 (604)
T PRK13984 436 SMARLQKMEYGEVNVKVTSLERTF-E-EMPADM-EEIEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEE 510 (604)
T ss_pred HHHhccccccCceEEEEeccccCc-c-cCCCCH-HHHHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCC
Confidence 9998753 68886432111 1 112111 12333 3468999999999988864 35666555432
Q ss_pred ----------CCcEEEcCEEEEeccCcCCCcchhh-c--CCcccCCCEEecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917 299 ----------DGSTIDADTIVIGIGAKPTVSPFER-V--GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 365 (497)
Q Consensus 299 ----------~g~~i~~D~vv~a~G~~p~~~~~~~-~--gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~ 365 (497)
+++++++|.||+|+|++|+++++.. + ++..++|+|.||++++|++|+|||+|||+..+.
T Consensus 511 G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~-------- 582 (604)
T PRK13984 511 GRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD-------- 582 (604)
T ss_pred CCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH--------
Confidence 1247999999999999999887653 2 355556789999999999999999999997542
Q ss_pred cccHHHHHHHHHHHHHHHh
Q 010917 366 VEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 366 ~~~~~~A~~~g~~~a~~i~ 384 (497)
...|+.+|+.||.+|.
T Consensus 583 ---~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 583 ---IIHGVADGYWAAEGID 598 (604)
T ss_pred ---HHHHHHHHHHHHHHHH
Confidence 2358888998888875
No 65
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=3e-33 Score=289.63 Aligned_cols=288 Identities=22% Similarity=0.309 Sum_probs=206.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 137 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (497)
...+||+||||||||++||.+|++.|+ +++||++......... .....++++....+..+...+.+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~GG~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~ 274 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERFGGQVLDT-----------MGIENFISVPETEGPKLAAALEE 274 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCeeecc-----------CcccccCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999998 8999976421100000 00011111112222222345566
Q ss_pred HHHHcCcEEEeCCcEEEEecC--CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHh
Q 010917 138 WYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 212 (497)
Q Consensus 138 ~~~~~~v~~~~~~~v~~i~~~--~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~ 212 (497)
.+++++++++.+++|..++.. ...+.+.++..+.||+||+|||+.++. +.+||.. ..++++.... + ..
T Consensus 275 ~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~~~---~---~~ 347 (517)
T PRK15317 275 HVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCPHC---D---GP 347 (517)
T ss_pred HHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEeecc---C---ch
Confidence 778889999999999999876 346777888889999999999998864 4455531 2344443211 1 11
Q ss_pred hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCc
Q 010917 213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGR 291 (497)
Q Consensus 213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~ 291 (497)
...+++|+|||+|++|+|+|..|+..+.+|+++++.+.+.. + +.+.+.+.+ .||++++++.++++..+ +++
T Consensus 348 ~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~ 419 (517)
T PRK15317 348 LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTGD-GDK 419 (517)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEcC-CCc
Confidence 24689999999999999999999999999999999876542 2 244555665 69999999999999853 456
Q ss_pred EEEEEeCC---C--cEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCCcccc
Q 010917 292 VAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 365 (497)
Q Consensus 292 v~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~ 365 (497)
+..+.+.+ | +++++|.+++++|.+|++++++.. +..+ +|+|.||++++|+.|+|||+|||+..+..
T Consensus 420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~k------- 491 (517)
T PRK15317 420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPYK------- 491 (517)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCCC-------
Confidence 66666543 3 369999999999999999998876 5554 57899999999999999999999986542
Q ss_pred cccHHHHHHHHHHHHHHHh
Q 010917 366 VEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 366 ~~~~~~A~~~g~~~a~~i~ 384 (497)
.+..|+.+|..||.++.
T Consensus 492 --~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 492 --QIIIAMGEGAKAALSAF 508 (517)
T ss_pred --EEEEhhhhHHHHHHHHH
Confidence 12225555555555543
No 66
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=5e-32 Score=275.24 Aligned_cols=324 Identities=28% Similarity=0.350 Sum_probs=265.9
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHc
Q 010917 63 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 142 (497)
Q Consensus 63 VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (497)
++|||+|+||+++|..|++... +.+++++..++...|.+++++..+..... ....+. .... +..+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~-~~~~~ 66 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGIA-SLEDLR-----------YPPR-FNRAT 66 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhcccC-CHHHhc-----------ccch-hHHhh
Confidence 5899999999999999999875 77999999999998988888764433221 111110 1112 33577
Q ss_pred CcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEE
Q 010917 143 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 222 (497)
Q Consensus 143 ~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv 222 (497)
++++..+++|+.+|+..+.+.+.++ ++.||+|++|||+.+...+ +....++++++...+...+.......++++|+
T Consensus 67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv 142 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV 142 (415)
T ss_pred CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence 8999999999999999999999999 7999999999999988544 55578899999999988888776667899999
Q ss_pred cCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE-EEeCCCc
Q 010917 223 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGS 301 (497)
Q Consensus 223 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~-v~~~~g~ 301 (497)
|+|++|+|+|..++++|++|++++..++++++.+.+.+.+.+.+.++++||+++++..+.+++...+..... +...++.
T Consensus 143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 222 (415)
T COG0446 143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE 222 (415)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc
Confidence 999999999999999999999999999999863328899999999999999999999999998653322211 5778889
Q ss_pred EEEcCEEEEeccCcCCCcchhhcC--CcccCCCEEecCCCCCC-CCcEEEeccccccCCccCCcccccccHHHHHHHHHH
Q 010917 302 TIDADTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 378 (497)
Q Consensus 302 ~i~~D~vv~a~G~~p~~~~~~~~g--l~~~~g~i~vd~~~~t~-~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 378 (497)
.+++|.+++++|.+||..+..+.+ +...+|++.||++++|+ .++|||+|||+..+....+......+++.+..+++.
T Consensus 223 ~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i 302 (415)
T COG0446 223 EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRI 302 (415)
T ss_pred EEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHH
Confidence 999999999999999977777765 45556789999999997 999999999999876654455567789999999999
Q ss_pred HHHHHhcCCCCCCCCCCceeeeccccC
Q 010917 379 CIKALLSAQTHTYDYLPYFYSRVFEYE 405 (497)
Q Consensus 379 ~a~~i~~~~~~~~~~~p~~~~~~~~~~ 405 (497)
++.++.+. .......++.|.++++..
T Consensus 303 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 328 (415)
T COG0446 303 AAENIAGA-LRIPGLLGTVISDVGDLC 328 (415)
T ss_pred HHHHhccc-cccccccCceEEEEcCeE
Confidence 99999865 333356788888888753
No 67
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-33 Score=265.39 Aligned_cols=266 Identities=26% Similarity=0.372 Sum_probs=206.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCc-EEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 136 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~-V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 136 (497)
+.+||+|||||||||+||.++++.+. + ++|+|+...- +++.... ....+|++.. ..+.++.....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l---~~~li~~~~~~g---------g~~~~~~-~venypg~~~~~~g~~L~~~~~ 68 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGL---KVVLILEGGEPG---------GQLTKTT-DVENYPGFPGGILGPELMEQMK 68 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCC---CcEEEEecCCcC---------Cccccce-eecCCCCCccCCchHHHHHHHH
Confidence 45899999999999999999999987 5 6666665332 1111111 3455666655 44555555666
Q ss_pred hHHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHH
Q 010917 137 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 211 (497)
Q Consensus 137 ~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~ 211 (497)
++....++++.. ..|..++... +.|+++++. +.+++||||||..++. +..++.. ..+++++.. ++.
T Consensus 69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cdg--- 139 (305)
T COG0492 69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CDG--- 139 (305)
T ss_pred HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cCc---
Confidence 667778999887 6888888774 578888888 9999999999999875 4444321 246777743 232
Q ss_pred hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCC
Q 010917 212 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDG 290 (497)
Q Consensus 212 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~ 290 (497)
+.++|+|+|+|||.+++|.|..|.+.+.+||+++|++.+.+ .+.+.+.++++ +|++++++.+.++..+ +
T Consensus 140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~ 209 (305)
T COG0492 140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILGD--D 209 (305)
T ss_pred -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEecC--c
Confidence 35688999999999999999999999999999999987764 23444555655 8999999999999843 3
Q ss_pred cEEEEEeCCC----cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCCCCCcEEEeccccccCC
Q 010917 291 RVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 357 (497)
Q Consensus 291 ~v~~v~~~~g----~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~ 357 (497)
+..+.+.+. +.+++|-+++++|..|++++++..+...++|+|.||+.++||+|+|||+|||+..+.
T Consensus 210 -v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~ 279 (305)
T COG0492 210 -VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG 279 (305)
T ss_pred -cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence 556777663 378999999999999999999998885567899999999999999999999998764
No 68
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.5e-32 Score=285.93 Aligned_cols=285 Identities=20% Similarity=0.294 Sum_probs=197.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
+.+||+|||||||||+||..|+++|+ +|+|||++..... +.. ......+++.....+....+.+.+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG~---------~~~-~~~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGGQ---------ITI-TSEVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCce---------EEe-ccccccCCCCcCCCHHHHHHHHHHH
Confidence 35899999999999999999999988 8999998643210 000 0001111221111111112334455
Q ss_pred HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHHHHhh
Q 010917 139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL 213 (497)
Q Consensus 139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~~ 213 (497)
+++.+++++ +++|+.++.+.. .+.+.++ .+.||+||||||+.|+. |.++|.+ ..+++++..... ..
T Consensus 70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~~------~~ 140 (555)
T TIGR03143 70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCDG------EF 140 (555)
T ss_pred HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecCh------hh
Confidence 667899986 568998887653 4555555 58999999999999874 5555532 234554432211 23
Q ss_pred ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917 214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 293 (497)
Q Consensus 214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~ 293 (497)
..+++|+|||+|++|+|+|..|.++|.+|+++++.+.+.. ..... .+.++++||++++++.|+++.. ++.+.
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v~ 212 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--DDGLR 212 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcEE
Confidence 4689999999999999999999999999999999886532 22222 2334557999999999999973 33333
Q ss_pred EEE---eCCCcE----EEcCE----EEEeccCcCCCcchhhcCCccc-CCCEEecCCCCCCCCcEEEeccccccCCccCC
Q 010917 294 AVK---LEDGST----IDADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 361 (497)
Q Consensus 294 ~v~---~~~g~~----i~~D~----vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g 361 (497)
.+. ..+|+. +++|. |++++|++|++.+++. ++..+ +|+|.||++++|+.|+|||+|||+....
T Consensus 213 ~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---- 287 (555)
T TIGR03143 213 YAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---- 287 (555)
T ss_pred EEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc----
Confidence 332 245653 23676 9999999999998775 45554 5789999999999999999999975321
Q ss_pred cccccccHHHHHHHHHHHHHHH
Q 010917 362 RTARVEHVDHARQSAQHCIKAL 383 (497)
Q Consensus 362 ~~~~~~~~~~A~~~g~~~a~~i 383 (497)
..+..|..+|+.||.+|
T Consensus 288 -----~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 288 -----RQVVTAVADGAIAATSA 304 (555)
T ss_pred -----chheeHHhhHHHHHHHH
Confidence 13345777888887777
No 69
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=100.00 E-value=2.6e-32 Score=285.64 Aligned_cols=330 Identities=22% Similarity=0.253 Sum_probs=224.4
Q ss_pred EeecccccccCcccccCCCCcccccC--CCCchhhhccccccc--------ccccCCCCCcEEEEcCchHHHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA--------YSSFANENREFVIVGGGNAAGYAARTFVE 81 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~~~VvIIGgG~AGl~aA~~L~~ 81 (497)
..+||||.++|++|+.+|..+|.|.. .++.++.++|+..+. ..+.....++|+|||+||+||++|..|++
T Consensus 79 ~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~ 158 (564)
T PRK12771 79 TKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRR 158 (564)
T ss_pred HHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 46799999999999999999999965 678888888764221 11123457899999999999999999999
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcE-EEEecCCC
Q 010917 82 HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV-TSIDIEKQ 160 (497)
Q Consensus 82 ~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v-~~i~~~~~ 160 (497)
.|+ +|+++|+.+..... +. +..+....+.++ .....+++.+.|+++..++.+ ..+..+.
T Consensus 159 ~G~---~V~v~e~~~~~GG~---l~--~gip~~~~~~~~-----------~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~- 218 (564)
T PRK12771 159 MGH---AVTIFEAGPKLGGM---MR--YGIPAYRLPREV-----------LDAEIQRILDLGVEVRLGVRVGEDITLEQ- 218 (564)
T ss_pred CCC---eEEEEecCCCCCCe---ee--ecCCCccCCHHH-----------HHHHHHHHHHCCCEEEeCCEECCcCCHHH-
Confidence 998 79999998754210 00 001111111000 112234567789999887654 2221111
Q ss_pred EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCC-
Q 010917 161 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK- 239 (497)
Q Consensus 161 ~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g- 239 (497)
....||+||+|||+.......+++....++...-.+............+++++|+|+|.++++.+..+.+++
T Consensus 219 -------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga 291 (564)
T PRK12771 219 -------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGA 291 (564)
T ss_pred -------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCC
Confidence 113589999999987543334455555555543222211111111235789999999999999999999998
Q ss_pred CcEEEEecCCcc-hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcE----EEEEe----CC-------C--c
Q 010917 240 LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV----AAVKL----ED-------G--S 301 (497)
Q Consensus 240 ~~Vtlv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v----~~v~~----~~-------g--~ 301 (497)
.+|+++.+.+.. ++. .. ..+ +...+.||+++++..+.++...+++.+ ..+.. .+ | .
T Consensus 292 ~~v~ii~r~~~~~~~~-~~----~~~-~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~ 365 (564)
T PRK12771 292 EEVTIVYRRTREDMPA-HD----EEI-EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEE 365 (564)
T ss_pred CEEEEEEecCcccCCC-CH----HHH-HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceE
Confidence 679999887542 211 11 222 234678999999999999975544432 11221 12 2 3
Q ss_pred EEEcCEEEEeccCcCCCcchhh-cCCcccCCCEEecC-CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHH
Q 010917 302 TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 379 (497)
Q Consensus 302 ~i~~D~vv~a~G~~p~~~~~~~-~gl~~~~g~i~vd~-~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~ 379 (497)
++++|.||+|+|..|+..++++ .++..++|++.||+ +++|+.|+|||+|||+..+. .+..|+.+|+.+
T Consensus 366 ~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G~~a 435 (564)
T PRK12771 366 TLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHGKKA 435 (564)
T ss_pred EEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHHHHH
Confidence 7999999999999999888875 56665578899998 78899999999999987432 456688888888
Q ss_pred HHHHh
Q 010917 380 IKALL 384 (497)
Q Consensus 380 a~~i~ 384 (497)
|.+|.
T Consensus 436 A~~i~ 440 (564)
T PRK12771 436 ARNID 440 (564)
T ss_pred HHHHH
Confidence 88873
No 70
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1.1e-31 Score=265.50 Aligned_cols=289 Identities=24% Similarity=0.280 Sum_probs=198.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 136 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (497)
+...++|+|||||++|+++|..|++.|+ +|+++|+.+..... +..+ .+....+.+. .....
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~---~~~~--~~~~~~~~~~-----------~~~~~ 75 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGGL---MLFG--IPEFRIPIER-----------VREGV 75 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCce---eeec--CcccccCHHH-----------HHHHH
Confidence 3456799999999999999999999987 89999998653210 0000 0000000000 11233
Q ss_pred hHHHHcCcEEEeCCcEEEEec----CC-----CEEEECCCcEEEeccEEeccCCC-CCcCCCCCCCCCCcEEEecCHHHH
Q 010917 137 EWYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADA 206 (497)
Q Consensus 137 ~~~~~~~v~~~~~~~v~~i~~----~~-----~~v~~~~g~~i~~d~lvlAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~ 206 (497)
+.+.+.+++++.++.+..++. .. ..+..+ +..+.||+||||||+. +. .|.++|.+.++++...+ ..
T Consensus 76 ~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~~--~~ 151 (352)
T PRK12770 76 KELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSALE--YL 151 (352)
T ss_pred HHHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC-cCCCCCccccCceeHHH--HH
Confidence 456667999998877754432 01 111111 1237899999999995 44 46667766667665321 11
Q ss_pred HHHHH---------h--hccCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhhccCHHHHHHHHHHHHHCCcE
Q 010917 207 DALIS---------S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 274 (497)
Q Consensus 207 ~~~~~---------~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~ 274 (497)
..+.. . ...+++++|+|+|++|+|+|..|.+.|.+ |+++++.+.... + ......+.|+++||+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~gi~ 226 (352)
T PRK12770 152 FRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA----P-AGKYEIERLIARGVE 226 (352)
T ss_pred HHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcCCE
Confidence 11111 0 11368999999999999999999999997 999988754221 1 113345668999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEe--------------------CCCcEEEcCEEEEeccCcCCCcchhh-cCCccc-CCC
Q 010917 275 FVKGASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGG 332 (497)
Q Consensus 275 i~~~~~v~~i~~~~~~~v~~v~~--------------------~~g~~i~~D~vv~a~G~~p~~~~~~~-~gl~~~-~g~ 332 (497)
+++++.+.+++.. +.+..+.+ .+++++++|.||+++|++|++.+..+ +++..+ +|+
T Consensus 227 i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~ 304 (352)
T PRK12770 227 FLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGE 304 (352)
T ss_pred EeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCc
Confidence 9999999998743 33433332 12357999999999999999887766 777664 467
Q ss_pred EEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917 333 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 333 i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
+.||++++|+.|+|||+|||+..+. .+..|+.+|+.+|.+|..
T Consensus 305 i~vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 305 IVVDEKHMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred EeeCCCcccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987542 456789999999988853
No 71
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.97 E-value=2.5e-30 Score=243.33 Aligned_cols=294 Identities=21% Similarity=0.327 Sum_probs=213.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 136 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (497)
...+++|||+|+|.+|.+.+..|-...+ +|++|++.+++.|. |.|+..-...-+ ...+ .+...
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve--~rSI-----------vEPIr 114 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVE--LRSI-----------VEPIR 114 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCcccccee--ehhh-----------hhhHH
Confidence 4567899999999999999999888766 89999999998776 444321111000 0000 11122
Q ss_pred hHHHHc--CcEEEeCCcEEEEecCCCEEEEC----CC----cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH
Q 010917 137 EWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 206 (497)
Q Consensus 137 ~~~~~~--~v~~~~~~~v~~i~~~~~~v~~~----~g----~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~ 206 (497)
....+. ++.++. .+.+.+|++++.|++. ++ ..+.||+||+|+|+.+.. ..+||- .++.+.++.++++
T Consensus 115 ~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~dA 191 (491)
T KOG2495|consen 115 AIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVEDA 191 (491)
T ss_pred HHhhccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhHH
Confidence 223333 456654 6888999999987653 34 368999999999999885 444443 2233456677777
Q ss_pred HHHHHhhc-----------------cCCeEEEEcCCHHHHHHHHHHHhC--------------CCcEEEEecCCcchhhc
Q 010917 207 DALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRL 255 (497)
Q Consensus 207 ~~~~~~~~-----------------~~~~vvVvG~G~~g~e~A~~l~~~--------------g~~Vtlv~~~~~~~~~~ 255 (497)
.+++..+- .--++||||||++|+|+|.+|+.. -.+||+++..+.+++ .
T Consensus 192 qeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-m 270 (491)
T KOG2495|consen 192 QEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-M 270 (491)
T ss_pred HHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-H
Confidence 77644321 012699999999999999998643 357999999999997 4
Q ss_pred cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcchhhcCCccc---C
Q 010917 256 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS---V 330 (497)
Q Consensus 256 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~---~ 330 (497)
|+..+.++.++.+.+.||++..++.|.+++.. . ..+...+| ++|++-.+||++|..|. ++.+.+....+ +
T Consensus 271 Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~---~-I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~r 345 (491)
T KOG2495|consen 271 FDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK---T-IHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGR 345 (491)
T ss_pred HHHHHHHHHHHHhhhccceeecccEEEeecCc---E-EEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCc
Confidence 89999999999999999999999999998732 2 23444455 57999999999999886 44444433332 3
Q ss_pred CCEEecCCCCC-CCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 010917 331 GGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383 (497)
Q Consensus 331 g~i~vd~~~~t-~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i 383 (497)
.++.||+++|. +.+||||+|||+..+.. .++.+.|.+||.++|+++
T Consensus 346 r~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 346 RGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNF 392 (491)
T ss_pred eeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHH
Confidence 47999999998 89999999999954332 226677999999999988
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.97 E-value=6.5e-29 Score=250.20 Aligned_cols=294 Identities=18% Similarity=0.262 Sum_probs=189.0
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHH--cCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVE--HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ 134 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~--~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (497)
....++|+|||||||||+||..|++ .|+ +|+|+|+.+.. |. +......+.......+ ...
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~---~Vtv~E~~p~p-gG---lvr~gvaP~~~~~k~v-----------~~~ 84 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGA---RVDIIERLPTP-FG---LVRSGVAPDHPETKNV-----------TNQ 84 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCC---eEEEEecCCCC-cc---eEeeccCCCcchhHHH-----------HHH
Confidence 3456899999999999999999997 565 89999998753 22 1110011111111000 122
Q ss_pred CHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHH-------HH
Q 010917 135 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------AD 207 (497)
Q Consensus 135 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~-------~~ 207 (497)
+..++...+++++.+..+ .+.+.+++-. ..||+||||||+.+...+.++|.+.+|++...++.. ..
T Consensus 85 ~~~~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~ 157 (491)
T PLN02852 85 FSRVATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCV 157 (491)
T ss_pred HHHHHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhh
Confidence 344566678988876444 2233443332 479999999999864455678888899987755421 11
Q ss_pred HHHHhhccCCeEEEEcCCHHHHHHHHHHHhC--------------------CC-cEEEEecCCcchhhccCHHH------
Q 010917 208 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KL-DTTIIFPENHLLQRLFTPSL------ 260 (497)
Q Consensus 208 ~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~-~Vtlv~~~~~~~~~~~~~~~------ 260 (497)
.+...+..+++|+|||+|++|+|+|..|.+. +. +|+++.|+...-..+...++
T Consensus 158 ~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l 237 (491)
T PLN02852 158 HLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL 237 (491)
T ss_pred hhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence 1111234689999999999999999998875 54 59999988632111111111
Q ss_pred -------------------------------HHHHHHHHHH---------CCcEEEcCCeEEEEEeC--CCCcEEEEEeC
Q 010917 261 -------------------------------AQRYEQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE 298 (497)
Q Consensus 261 -------------------------------~~~~~~~l~~---------~GV~i~~~~~v~~i~~~--~~~~v~~v~~~ 298 (497)
.+.+.+...+ ++|.|++...+++|..+ +++++.++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~ 317 (491)
T PLN02852 238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLE 317 (491)
T ss_pred CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEE
Confidence 1112222222 57999999999999743 23567666552
Q ss_pred -----------------CC--cEEEcCEEEEeccCc--CCCcc-hh-hcCCcc-cCCCEEecCCCCCCCCcEEEeccccc
Q 010917 299 -----------------DG--STIDADTIVIGIGAK--PTVSP-FE-RVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAA 354 (497)
Q Consensus 299 -----------------~g--~~i~~D~vv~a~G~~--p~~~~-~~-~~gl~~-~~g~i~vd~~~~t~~~~iya~GD~~~ 354 (497)
+| ++++||.||.++|++ |...+ +. ..++.. .+|+|.+|+.++|+.|+|||+|||..
T Consensus 318 ~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~ 397 (491)
T PLN02852 318 RTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKR 397 (491)
T ss_pred EeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEec
Confidence 23 269999999999998 55443 32 233433 36889999888999999999999998
Q ss_pred cCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917 355 FPLKMYDRTARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 355 ~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~ 384 (497)
.+... +..++..|+.++.+|+
T Consensus 398 Gp~gv---------I~t~~~dA~~ta~~i~ 418 (491)
T PLN02852 398 GPTGI---------IGTNLTCAEETVASIA 418 (491)
T ss_pred CCCCe---------eeecHhhHHHHHHHHH
Confidence 66532 2234455555555554
No 73
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-27 Score=218.18 Aligned_cols=208 Identities=27% Similarity=0.435 Sum_probs=165.0
Q ss_pred EEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 169 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 169 ~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
.+.++.+|||||.+|+ +|.+||.. .+. .+++++......+.+-+|||+|++++|+|.+|+..|.+||+..|+
T Consensus 159 ~~ta~~fvIatG~RPr-Yp~IpG~~----Ey~---ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS 230 (503)
T KOG4716|consen 159 FLTAENFVIATGLRPR-YPDIPGAK----EYG---ITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS 230 (503)
T ss_pred EeecceEEEEecCCCC-CCCCCCce----eee---ecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence 5789999999999998 57655532 222 235666666667778889999999999999999999999999886
Q ss_pred CcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEeccCcCCCcc--h
Q 010917 249 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSP--F 321 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~~D~vv~a~G~~p~~~~--~ 321 (497)
-. + +.||.++.+.+.+.++++||+|...+.+.+++..++++.. |... .+ -+-++|.|+||+|+.+.++- +
T Consensus 231 I~-L-rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L 307 (503)
T KOG4716|consen 231 IL-L-RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLR-VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNL 307 (503)
T ss_pred ee-c-ccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEE-EEeecccccccccchhhhhhhhhccccchhhcCC
Confidence 43 3 4599999999999999999999999888888887777642 3222 22 24679999999999998764 5
Q ss_pred hhcCCccc--CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCc
Q 010917 322 ERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPY 396 (497)
Q Consensus 322 ~~~gl~~~--~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~~--~~~~~~p~ 396 (497)
+..|+..+ .|.|.+|+.-+|++|+|||+||+.... .|....|++.|+.+|+.|.++.. ..|..+|.
T Consensus 308 ~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~T 377 (503)
T KOG4716|consen 308 DNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVAT 377 (503)
T ss_pred CccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCce
Confidence 66777763 578999999999999999999998743 33556699999999999997654 36666664
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=2.9e-27 Score=260.63 Aligned_cols=281 Identities=16% Similarity=0.148 Sum_probs=194.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
..+||+|||||||||+||.+|++.|+ +|+|+|+++...- .+.... ..+++.. ..++.....+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~GG--------~~~~~~---~~~~g~~---~~~~~~~~~~~ 224 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAGG--------SLLSEA---ETIDGKP---AADWAAATVAE 224 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCCC--------eeeccc---cccCCcc---HHHHHHHHHHH
Confidence 35799999999999999999999998 8999999865321 111000 0011000 00001122333
Q ss_pred HHHc-CcEEEeCCcEEEEecCCCEEEE-----------CC---C--cEEEeccEEeccCCCCCcCCCCCCCCCCcEEEec
Q 010917 139 YKEK-GIEMIYQDPVTSIDIEKQTLIT-----------NS---G--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR 201 (497)
Q Consensus 139 ~~~~-~v~~~~~~~v~~i~~~~~~v~~-----------~~---g--~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~ 201 (497)
+... +++++.+++|..++........ .. + ..+.||+||||||+.++. ++++|.+.+++.+..
T Consensus 225 l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~-~pipG~~~pgV~~~~ 303 (985)
T TIGR01372 225 LTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP-LVFANNDRPGVMLAG 303 (985)
T ss_pred HhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC-CCCCCCCCCCcEEch
Confidence 4444 5999999999887653321111 00 1 158999999999999874 556888889998764
Q ss_pred CHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917 202 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 280 (497)
Q Consensus 202 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~ 280 (497)
........ .....+++|+|+|+|++|+|+|..|++.|.+ |++++..+.+. ..+.+.+++.||++++++.
T Consensus 304 ~~~~~l~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L~~~GV~i~~~~~ 373 (985)
T TIGR01372 304 AARTYLNR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEARELGIEVLTGHV 373 (985)
T ss_pred HHHHHHHh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHHHHcCCEEEcCCe
Confidence 43322111 1123679999999999999999999999964 78887765432 2355678999999999999
Q ss_pred EEEEEeCCCCcEEEEEeC----CCcEEEcCEEEEeccCcCCCcchhhcCCccc--C--CCEEecCCCCCCCCcEEEeccc
Q 010917 281 IKNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFAIGDV 352 (497)
Q Consensus 281 v~~i~~~~~~~v~~v~~~----~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~--~--g~i~vd~~~~t~~~~iya~GD~ 352 (497)
++++.. ++.+..|++. ++++++||.|+++.|.+||++++..++.... . +... -.|+.|+||++|||
T Consensus 374 v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~ 447 (985)
T TIGR01372 374 VAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAA 447 (985)
T ss_pred EEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEEeecc
Confidence 999973 4445455543 4568999999999999999999988876542 1 1111 13779999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917 353 AAFPLKMYDRTARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~ 384 (497)
++.. ....|..+|+.||..++
T Consensus 448 ~g~~-----------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 448 NGLF-----------GLAAALADGAAAGAAAA 468 (985)
T ss_pred CCcc-----------CHHHHHHHHHHHHHHHH
Confidence 9754 34457888888887764
No 75
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.95 E-value=1.3e-26 Score=244.02 Aligned_cols=287 Identities=11% Similarity=0.076 Sum_probs=178.7
Q ss_pred EEeecccccccC-cccccCCCCcccccC-CCCchhhhccccccc------------------------ccccCCCCCcEE
Q 010917 11 ASVSNSLSFKHG-LSLWCPQSPSLHRIR-HSSAKNFQRRGFVVA------------------------YSSFANENREFV 64 (497)
Q Consensus 11 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------~~~~~~~~~~Vv 64 (497)
...+||||.+|| ++|+ +|..+|.+.. .+++|+.++|+..+. +.+...+.++|+
T Consensus 309 i~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVa 387 (1028)
T PRK06567 309 IVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNIL 387 (1028)
T ss_pred HHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEE
Confidence 346899999999 8887 7999998865 799999998854321 112335678999
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC--C---------CCCCccccC-CCCCCCCCCCCCccccCCC
Q 010917 65 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YE--R---------PALTKGYLF-PLDKKPARLPGFHTCVGSG 130 (497)
Q Consensus 65 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~--~---------~~l~~~~l~-~~~~~~~~~~~~~~~~~~~ 130 (497)
|||||||||+||++|++.|| +||++|+.+..+ |. . +.+...... ........++
T Consensus 388 VVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp--------- 455 (1028)
T PRK06567 388 VTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT--------- 455 (1028)
T ss_pred EECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc---------
Confidence 99999999999999999999 899999864321 11 0 111100000 0000011110
Q ss_pred CCCCCHhHH------HHcC--cEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCC-CCCcCCCCCCCCCCcEEEec
Q 010917 131 GERQTPEWY------KEKG--IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIR 201 (497)
Q Consensus 131 ~~~~~~~~~------~~~~--v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~-~~~~~~~~~g~~~~gv~~~~ 201 (497)
.+...+.+ .+.+ ++++.++.+ . ..++.++-....||+|+||||+ .++ .+.++|.+.+++....
T Consensus 456 -~R~~k~~l~~i~~il~~g~~v~~~~gv~l-G-----~dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda~GV~sA~ 527 (1028)
T PRK06567 456 -VRWDKNNLDILRLILERNNNFKYYDGVAL-D-----FNITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEAKGVKTAS 527 (1028)
T ss_pred -ccchHHHHHHHHHHHhcCCceEEECCeEE-C-----ccCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccCCCeEEHH
Confidence 11122222 2223 555545332 1 1222222123579999999999 566 4567887778887654
Q ss_pred CHHHHHHHHHh--------hccCCeEEEEcCCHHHHHHHHHHHh------------------------------------
Q 010917 202 DVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG------------------------------------ 237 (497)
Q Consensus 202 ~~~~~~~~~~~--------~~~~~~vvVvG~G~~g~e~A~~l~~------------------------------------ 237 (497)
++......... ...+++|+|||||++|+|+|.....
T Consensus 528 DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~ 607 (1028)
T PRK06567 528 DFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLF 607 (1028)
T ss_pred HHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhh
Confidence 43322211110 1236899999999999999984332
Q ss_pred ---------------CCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC----
Q 010917 238 ---------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---- 298 (497)
Q Consensus 238 ---------------~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---- 298 (497)
.| .|+++.|+..--.. ......+.+.+ ..+.||+|+.+..+.+|..+++|++.++++.
T Consensus 608 g~~~~~~~v~~l~~~~G-~VtIvYRr~~~emp-A~~~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~ 684 (1028)
T PRK06567 608 KEAKNNEELRKVFNKLG-GATVYYRGRLQDSP-AYKLNHEELIY-ALALGVDFKENMQPLRINVDKYGHVESVEFENRNR 684 (1028)
T ss_pred cchhccchhhhhhccCC-ceEEEecCChhhCC-CCCCCHHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEec
Confidence 23 28888877532111 00001223333 4678999999999999986656777655442
Q ss_pred ----------C----------------CcEEEcCEEEEeccCcCCCcch
Q 010917 299 ----------D----------------GSTIDADTIVIGIGAKPTVSPF 321 (497)
Q Consensus 299 ----------~----------------g~~i~~D~vv~a~G~~p~~~~~ 321 (497)
+ ..+++||.||+|+|..||+.+.
T Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~ 733 (1028)
T PRK06567 685 HCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD 733 (1028)
T ss_pred ccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc
Confidence 1 1469999999999999998763
No 76
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-26 Score=198.36 Aligned_cols=278 Identities=21% Similarity=0.283 Sum_probs=196.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCcc-ccCCCCCCCCH
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 136 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 136 (497)
..+.+|+|||+|||+..||+++++.-. +-+|+|-.-.- ..-+.+.|. .....+.+|+|+. ..|.++.+..+
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~~~~----~i~pGGQLt-TTT~veNfPGFPdgi~G~~l~d~mr 77 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGMMAN----GIAPGGQLT-TTTDVENFPGFPDGITGPELMDKMR 77 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhccc---CceEEeeeecc----CcCCCceee-eeeccccCCCCCcccccHHHHHHHH
Confidence 345699999999999999999999865 67777753211 011122222 2345677888876 56677777778
Q ss_pred hHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHh--
Q 010917 137 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-- 212 (497)
Q Consensus 137 ~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~-- 212 (497)
++..+.|.+++. .+|.+++...+ ++.+ +.+.+.+|.+|+|||+..+++. .||.. ++-+.-+.+..+.-....
T Consensus 78 kqs~r~Gt~i~t-EtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~g-e~~fWqrGiSaCAVCDGaap 153 (322)
T KOG0404|consen 78 KQSERFGTEIIT-ETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGEG-EGEFWQRGISACAVCDGAAP 153 (322)
T ss_pred HHHHhhcceeee-eehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCCC-cchHHhcccchhhcccCcch
Confidence 888889999987 47888887665 4555 4445899999999999987754 23321 111111122222111111
Q ss_pred hccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCc-
Q 010917 213 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR- 291 (497)
Q Consensus 213 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~- 291 (497)
+..+|..+|||||.+++|-|.+|.+.+.+|++++|++.+..+ .. +.++..+..+|++++++.+.+...+ .+.
T Consensus 154 ifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs---~~---Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l 226 (322)
T KOG0404|consen 154 IFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS---KI---MQQRAEKNPNIEVLYNTVAVEALGD-GKLL 226 (322)
T ss_pred hhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH---HH---HHHHHhcCCCeEEEechhhhhhccC-cccc
Confidence 246889999999999999999999999999999999977653 11 2234456678999999987776532 222
Q ss_pred ----EEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc-CCCEEec-CCCCCCCCcEEEecccccc
Q 010917 292 ----VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAF 355 (497)
Q Consensus 292 ----v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~-~g~i~vd-~~~~t~~~~iya~GD~~~~ 355 (497)
+..+.+.+.+.++.+-+++++|..|++.+++. .++.+ +|+|++- ..-.||+|++||+||+...
T Consensus 227 ~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 227 NGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK 295 (322)
T ss_pred cceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccchH
Confidence 22333334457999999999999999999987 45554 6788876 4677999999999999864
No 77
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=231.08 Aligned_cols=337 Identities=23% Similarity=0.216 Sum_probs=231.3
Q ss_pred EeecccccccCcccccC--CCCccccc--CCCCchhhhccccccc---------ccccCCCCCcEEEEcCchHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWCP--QSPSLHRI--RHSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAART 78 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~VvIIGgG~AGl~aA~~ 78 (497)
..+|+||..+|+.|+.+ |..+|-.. ..++++..+.++..+. ..+.....++|.|||||||||+||..
T Consensus 62 ~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~ 141 (457)
T COG0493 62 HKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADD 141 (457)
T ss_pred HHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHH
Confidence 45799999999999977 88899885 4888998887776632 12224456899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC
Q 010917 79 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 158 (497)
Q Consensus 79 L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~ 158 (497)
|++.|+ .||++|+.+...- +. .|-.+..+.+.++ ..+..+.+++.|++|++++++-
T Consensus 142 L~~~G~---~Vtv~e~~~~~GG----ll-~yGIP~~kl~k~i-----------~d~~i~~l~~~Gv~~~~~~~vG----- 197 (457)
T COG0493 142 LSRAGH---DVTVFERVALDGG----LL-LYGIPDFKLPKDI-----------LDRRLELLERSGVEFKLNVRVG----- 197 (457)
T ss_pred HHhCCC---eEEEeCCcCCCce----eE-EecCchhhccchH-----------HHHHHHHHHHcCeEEEEcceEC-----
Confidence 999999 8999998865320 00 0112222222222 3455678889999999987653
Q ss_pred CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhh---------ccCCeEEEEcCCHHHH
Q 010917 159 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGYIGM 229 (497)
Q Consensus 159 ~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~---------~~~~~vvVvG~G~~g~ 229 (497)
+.++++.- .-.||+++++||+.-.....++|.+.++++...++.......... ..+++|+|||+|.+++
T Consensus 198 -~~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~ 275 (457)
T COG0493 198 -RDITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAM 275 (457)
T ss_pred -CcCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHH
Confidence 11221111 136799999999875444566787788887654443332211111 1248999999999999
Q ss_pred HHHHHHHhCCC-cEEEEecCCcchh-hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---------
Q 010917 230 EVAAAAVGWKL-DTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------- 298 (497)
Q Consensus 230 e~A~~l~~~g~-~Vtlv~~~~~~~~-~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--------- 298 (497)
+++....++|. +|+.+.+...--. ...+........+...++|+.+.+.....++..+++|++..+.+.
T Consensus 276 D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~ 355 (457)
T COG0493 276 DCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVD 355 (457)
T ss_pred HHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCccc
Confidence 99999999998 5777653221100 001112234455667889999999999999987777877655331
Q ss_pred ----------CC--cEEEcCEEEEeccCcCCCcch--hhcCCccc-CCCEEecCCC-CCCCCcEEEeccccccCCccCCc
Q 010917 299 ----------DG--STIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLKMYDR 362 (497)
Q Consensus 299 ----------~g--~~i~~D~vv~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~-~t~~~~iya~GD~~~~~~~~~g~ 362 (497)
.| .++++|.|+.++|+.++.... ...++..+ .|.+.+|+.+ +|+.|++||.||+.....
T Consensus 356 ~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~----- 430 (457)
T COG0493 356 GWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA----- 430 (457)
T ss_pred ccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh-----
Confidence 12 368899999999998874432 22234443 5889999988 999999999999998533
Q ss_pred ccccccHHHHHHHHHHHHHHHh
Q 010917 363 TARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 363 ~~~~~~~~~A~~~g~~~a~~i~ 384 (497)
.+-.|+.+|+.+|+.|.
T Consensus 431 -----~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 431 -----LVVWAIAEGREAAKAID 447 (457)
T ss_pred -----hhhhHHhhchHHHHhhh
Confidence 33447778888777664
No 78
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-26 Score=209.44 Aligned_cols=271 Identities=21% Similarity=0.315 Sum_probs=195.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 137 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (497)
...+||+||||||||-+||.+.+++|... =.+-|+-.....+ ....+.+...+...|..+...+.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRT--Gl~aerfGGQvld------------T~~IENfIsv~~teGpkl~~ale~ 274 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRT--GLVAERFGGQVLD------------TMGIENFISVPETEGPKLAAALEA 274 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchh--hhhhhhhCCeecc------------ccchhheeccccccchHHHHHHHH
Confidence 45689999999999999999999999731 1122221111011 001112222222222222344566
Q ss_pred HHHHcCcEEEeCCcEEEEecC-----CCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCC---CCcEEEecCHHHHHHH
Q 010917 138 WYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL 209 (497)
Q Consensus 138 ~~~~~~v~~~~~~~v~~i~~~-----~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~ 209 (497)
..+++.|++....+++.+.+. ...|++++|..+..+.+|+|||++.+.+ ++||.+ -.|+.++..- +
T Consensus 275 Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~-nvPGE~e~rnKGVayCPHC---D-- 348 (520)
T COG3634 275 HVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNM-NVPGEDEYRNKGVAYCPHC---D-- 348 (520)
T ss_pred HHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcC-CCCchHHHhhCCeeeCCCC---C--
Confidence 677889998876777777763 3489999999999999999999998754 456643 3577777532 2
Q ss_pred HHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCC
Q 010917 210 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGS 288 (497)
Q Consensus 210 ~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~ 288 (497)
..+.++|+|+|||||++|+|.|..|+..-.+||+++-.+.+-. | +.+++.+.. .+|+++.+..-++|..+
T Consensus 349 -GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA---D----~VLq~kl~sl~Nv~ii~na~Ttei~Gd- 419 (520)
T COG3634 349 -GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA---D----AVLQDKLRSLPNVTIITNAQTTEVKGD- 419 (520)
T ss_pred -CcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh---H----HHHHHHHhcCCCcEEEecceeeEEecC-
Confidence 2356899999999999999999999999899999986665432 2 234444544 48999999999999843
Q ss_pred CCcEEEEEeCC---C--cEEEcCEEEEeccCcCCCcchhhcCCcc-cCCCEEecCCCCCCCCcEEEeccccccCCc
Q 010917 289 DGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 358 (497)
Q Consensus 289 ~~~v~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 358 (497)
+.++.++...+ | ..++-+-|++-+|..||++|++.. ++. ..|-|.||....||.|+|||+|||+..++.
T Consensus 420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yK 494 (520)
T COG3634 420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYK 494 (520)
T ss_pred CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccc
Confidence 35666665543 3 357788899999999999999988 554 467799999999999999999999987764
No 79
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=1.9e-24 Score=218.91 Aligned_cols=289 Identities=17% Similarity=0.174 Sum_probs=181.9
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCC-----------------CCccccCCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPA-----------------LTKGYLFPLDK 115 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~-----------------l~~~~l~~~~~ 115 (497)
+...++|+|||||+|||+||++|++.|+ +++++|+++... |.... +...+......
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence 3446899999999999999999999998 899999987543 21000 00000000000
Q ss_pred C---CCCCCCCcc-----------ccCCCCCCCCHhHHHHcCcE--EEeCCcEEEEecCCC--EEEECCC--c--EEEec
Q 010917 116 K---PARLPGFHT-----------CVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYG 173 (497)
Q Consensus 116 ~---~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~--~v~~~~g--~--~i~~d 173 (497)
. ..++|.... ..+.+..+++.++.++.++. ++++++|+.+++.+. .|++.++ . +..||
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence 0 001111100 01122233445555677887 888999999987654 4554432 2 45799
Q ss_pred cEEeccC--CCCCcCCCCCCC-CCCcE-EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917 174 SLIVATG--CTASRFPEKIGG-YLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 249 (497)
Q Consensus 174 ~lvlAtG--~~~~~~~~~~g~-~~~gv-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 249 (497)
+||+||| +.|+ .|.++|. ..+|. .+..++.+.+ ..++|+|+|||+|.+|+|+|..|...+.+|+++++..
T Consensus 164 ~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 9999999 5565 4666664 23442 1212222221 2368999999999999999999999999999999875
Q ss_pred cchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc
Q 010917 250 HLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 329 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~ 329 (497)
.+.. + ..+......+..+..|..+.. ++ .|++.||+++++|.||+|+|++++.++++..+
T Consensus 238 ~~~~----------~-~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~---- 297 (461)
T PLN02172 238 ESDT----------Y-EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNG---- 297 (461)
T ss_pred cccc----------c-ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCccc----
Confidence 3211 0 011112234455666766652 33 47889999999999999999999999887543
Q ss_pred CCCEEecCCC------C---CC-CCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 010917 330 VGGIQVDGQF------R---TR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 387 (497)
Q Consensus 330 ~g~i~vd~~~------~---t~-~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~~ 387 (497)
.+.+|++. . .. .|+++.+|=.... ..+..+..|++.+|+.+.|..
T Consensus 298 --~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 298 --YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred --ceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence 33343321 1 12 4899999943211 133457789999998887643
No 80
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.90 E-value=1.4e-23 Score=215.41 Aligned_cols=331 Identities=19% Similarity=0.264 Sum_probs=198.1
Q ss_pred EeecccccccCcccccCCCCcccccC--CCCchhh---------hcccccccccccCCCCCcEEEEcCchHHHHHHHHHH
Q 010917 12 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNF---------QRRGFVVAYSSFANENREFVIVGGGNAAGYAARTFV 80 (497)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~ 80 (497)
..+|+||..+|+.|+.||..+|.-.. .++.+.. ..+-+..+-+|...+.++|.|||+|||||+||..|.
T Consensus 1726 l~tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqln 1805 (2142)
T KOG0399|consen 1726 LETNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLN 1805 (2142)
T ss_pred HhhCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHh
Confidence 35799999999999999999997632 3443333 333333333444566799999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCC----CCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEe
Q 010917 81 EHGMADGRLCIVSKEAYAP----YERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSID 156 (497)
Q Consensus 81 ~~g~~~~~V~lie~~~~~~----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 156 (497)
+.|| .|+++|+.+... |..|.+ +... + ..++-.+.+.+.||+|..++++-
T Consensus 1806 k~gh---~v~vyer~dr~ggll~ygipnm---------kldk----~-------vv~rrv~ll~~egi~f~tn~eig--- 1859 (2142)
T KOG0399|consen 1806 KAGH---TVTVYERSDRVGGLLMYGIPNM---------KLDK----F-------VVQRRVDLLEQEGIRFVTNTEIG--- 1859 (2142)
T ss_pred hcCc---EEEEEEecCCcCceeeecCCcc---------chhH----H-------HHHHHHHHHHhhCceEEeecccc---
Confidence 9999 899999987642 211111 0000 0 01233456788899999987652
Q ss_pred cCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHH--HHHH-------hhccCCeEEEEcCCHH
Q 010917 157 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS-------SLEKAKKVVVVGGGYI 227 (497)
Q Consensus 157 ~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~--~~~~-------~~~~~~~vvVvG~G~~ 227 (497)
+.+.+ |+-.-.+|++|+|+|+...+-.+++|.++.|++..-.+.+.. .+.. ...++|+|+|||||.+
T Consensus 1860 ---k~vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdt 1935 (2142)
T KOG0399|consen 1860 ---KHVSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDT 1935 (2142)
T ss_pred ---ccccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCc
Confidence 22222 222247899999999874333346788888887544333221 1111 1136899999999999
Q ss_pred HHHHHHHHHhCCCcEE-EEecCCc---------chh---hccCHHHHH-HHHHHHHHCCcEEEcCCe-EEEEEeCCCCcE
Q 010917 228 GMEVAAAAVGWKLDTT-IIFPENH---------LLQ---RLFTPSLAQ-RYEQLYQQNGVKFVKGAS-IKNLEAGSDGRV 292 (497)
Q Consensus 228 g~e~A~~l~~~g~~Vt-lv~~~~~---------~~~---~~~~~~~~~-~~~~~l~~~GV~i~~~~~-v~~i~~~~~~~v 292 (497)
|.++...-.+.|++-. -++--+. ++| +.|--+... ..++ .-|-+..+-+- -+++..+++|.+
T Consensus 1936 g~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~---~~g~dpr~y~vltk~f~~~~~g~v 2012 (2142)
T KOG0399|consen 1936 GTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKE---HYGSDPRTYSVLTKRFIGDDNGNV 2012 (2142)
T ss_pred cccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHH---HhCCCcceeeeeeeeeeccCCCce
Confidence 9999988888887532 2221111 111 111111111 1111 11221111111 112222223322
Q ss_pred EEE------------------EeCC-CcEEEcCEEEEeccCc-CCCcchhhcCCccc-CCCEEe-cCCCCCCCCcEEEec
Q 010917 293 AAV------------------KLED-GSTIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQV-DGQFRTRMPGIFAIG 350 (497)
Q Consensus 293 ~~v------------------~~~~-g~~i~~D~vv~a~G~~-p~~~~~~~~gl~~~-~g~i~v-d~~~~t~~~~iya~G 350 (497)
.++ +..+ .+.++||+|++|.|+. |.....++++++.+ ++.|.+ ++.+.|+++.+||+|
T Consensus 2013 ~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaag 2092 (2142)
T KOG0399|consen 2013 TGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAG 2092 (2142)
T ss_pred eeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecc
Confidence 222 2222 2579999999999997 54456788888876 333443 456889999999999
Q ss_pred cccccCCccCCcccccccHHHHHHHHHHHHH
Q 010917 351 DVAAFPLKMYDRTARVEHVDHARQSAQHCIK 381 (497)
Q Consensus 351 D~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~ 381 (497)
||-..... .+..++.+++.|+.+-.
T Consensus 2093 dcrrgqsl------vvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2093 DCRRGQSL------VVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred cccCCceE------EEEEehhhhHHHHHHHH
Confidence 99885543 23344444444444433
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.88 E-value=9.9e-22 Score=201.61 Aligned_cols=300 Identities=22% Similarity=0.300 Sum_probs=156.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCC--------------CCCcccc-CCCCCCCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERP--------------ALTKGYL-FPLDKKPARL 120 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~--------------~l~~~~l-~~~~~~~~~~ 120 (497)
.++|+|||||++||++|+.|.+.|+ +++++|+++... |... ..++... +.....+.+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~ 77 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY 77 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence 3799999999999999999999998 899999998654 1110 1111111 2222333444
Q ss_pred CCCccccCCCCCCCCHhHHHHcCc--EEEeCCcEEEEecCC-------CEEEECC-Cc--EEEeccEEeccCCCCCc-CC
Q 010917 121 PGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTASR-FP 187 (497)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~-------~~v~~~~-g~--~i~~d~lvlAtG~~~~~-~~ 187 (497)
|.+.. .....+++..+.++.++ .++++++|+++.... ..|++.+ |+ +..||+||+|||....+ +|
T Consensus 78 p~f~~--~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 78 PDFPS--HSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp SSSEB--HHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CCCCC--HHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 43322 11223344555566666 478899999987532 2466644 32 45799999999975321 23
Q ss_pred C--CCCCC-CCc-EEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc-hhhcc------
Q 010917 188 E--KIGGY-LPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-LQRLF------ 256 (497)
Q Consensus 188 ~--~~g~~-~~g-v~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~~------ 256 (497)
. .+|.+ .+| +.+..++.+. ...++|+|+|||+|.+|+++|..|+..+.+|++..|+..+ +++..
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 2 33321 222 2222222221 2347999999999999999999999999999988877432 22111
Q ss_pred ----------------CHHHHHHH-HHH--------------------------------HHHCCcEEEcCCeEEEEEeC
Q 010917 257 ----------------TPSLAQRY-EQL--------------------------------YQQNGVKFVKGASIKNLEAG 287 (497)
Q Consensus 257 ----------------~~~~~~~~-~~~--------------------------------l~~~GV~i~~~~~v~~i~~~ 287 (497)
+..+.+.+ .+. +....|++. ..|.+++.+
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~~ 308 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTEN 308 (531)
T ss_dssp --------------------------------------------------------------------E--E-EEEE-SS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccc
Confidence 00011111 000 111122222 123344321
Q ss_pred CCCcEEEEEeCCCcEE-EcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCC---CCCCCcEEEeccccccCCccCCcc
Q 010917 288 SDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF---RTRMPGIFAIGDVAAFPLKMYDRT 363 (497)
Q Consensus 288 ~~~~v~~v~~~~g~~i-~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~---~t~~~~iya~GD~~~~~~~~~g~~ 363 (497)
++.+.||+++ ++|.||+|||++.+.+++++.-+...++.+..-.++ +...|++..+|=+... |
T Consensus 309 ------~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-----g-- 375 (531)
T PF00743_consen 309 ------SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-----G-- 375 (531)
T ss_dssp ------EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-----S--
T ss_pred ------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----c--
Confidence 5778999875 699999999999988888776444433333222221 1235788888854321 1
Q ss_pred cccccHHHHHHHHHHHHHHHhcCC
Q 010917 364 ARVEHVDHARQSAQHCIKALLSAQ 387 (497)
Q Consensus 364 ~~~~~~~~A~~~g~~~a~~i~~~~ 387 (497)
..+..+..||+.+|+-+.|..
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSS
T ss_pred ---ccccccccccccccccccccc
Confidence 134557889999998877543
No 82
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.87 E-value=1.7e-21 Score=172.07 Aligned_cols=265 Identities=26% Similarity=0.375 Sum_probs=176.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 137 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (497)
+.+|||||+||.+||..|+..-. ..+|.|+..++.. .|..- ..|+...+-. +.
T Consensus 1 kfivvgggiagvscaeqla~~~p-sa~illitass~vksvtn~~~i---~~ylekfdv~-------------------eq 57 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEP-SAEILLITASSFVKSVTNYQKI---GQYLEKFDVK-------------------EQ 57 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCC-CCcEEEEeccHHHHHHhhHHHH---HHHHHhcCcc-------------------cc
Confidence 46899999999999999999875 7799999987642 11110 0011100000 00
Q ss_pred HHHHcCcEEE--eCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhcc
Q 010917 138 WYKEKGIEMI--YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 215 (497)
Q Consensus 138 ~~~~~~v~~~--~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 215 (497)
-....|-++. ++ .|..++...+.+++.+|..+.|++|+++||++|...- .+ --+-+...++.+....+...+.+
T Consensus 58 ~~~elg~~f~~~~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~k 133 (334)
T KOG2755|consen 58 NCHELGPDFRRFLN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVK 133 (334)
T ss_pred chhhhcccHHHHHH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhh
Confidence 0111111111 12 2556677788999999999999999999999987432 22 23556677777777888888889
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCC------------cEEEcC-----
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG------------VKFVKG----- 278 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~G------------V~i~~~----- 278 (497)
.|.|.|+|.|-+++|++..+.. .+|++....+.+...+++|.+...+...+...+ ++.+.+
T Consensus 134 aK~VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~ 211 (334)
T KOG2755|consen 134 AKIVLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENN 211 (334)
T ss_pred cceEEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccC
Confidence 9999999999999999998755 479998888888888888888777766551110 100000
Q ss_pred ------------CeEEEEEeCCCC-------cEE---------EEEe---CCC--cEEEcCEEEEeccCcCCCcchhhcC
Q 010917 279 ------------ASIKNLEAGSDG-------RVA---------AVKL---EDG--STIDADTIVIGIGAKPTVSPFERVG 325 (497)
Q Consensus 279 ------------~~v~~i~~~~~~-------~v~---------~v~~---~~g--~~i~~D~vv~a~G~~p~~~~~~~~g 325 (497)
-....+...++. .+. .++. ..+ ..+.||.+++|+|..||.+++-...
T Consensus 212 vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~ 291 (334)
T KOG2755|consen 212 VGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKM 291 (334)
T ss_pred cccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecCh
Confidence 000000000000 000 0110 111 3688999999999999999765444
Q ss_pred Ccc-cCCCEEecCCCCCCCCcEEEecccccc
Q 010917 326 LNS-SVGGIQVDGQFRTRMPGIFAIGDVAAF 355 (497)
Q Consensus 326 l~~-~~g~i~vd~~~~t~~~~iya~GD~~~~ 355 (497)
+.. ++|++.||+.|+|+.|++||+||++..
T Consensus 292 lq~~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 292 LQITEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred hhhccccCeeehhhccccccceeeecceecc
Confidence 443 578999999999999999999999983
No 83
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.85 E-value=2.5e-20 Score=169.23 Aligned_cols=295 Identities=20% Similarity=0.282 Sum_probs=193.4
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCC--ccccCCCCCCCCCCCCCccccCCCCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT--KGYLFPLDKKPARLPGFHTCVGSGGERQ 134 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (497)
....++|+|||||.+|+..|..+.++-. .++|-++|+.+.+.|+ |... ++.+...+....
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIvep~e~HyYQ-PgfTLvGgGl~~l~~srr---------------- 97 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVEPAEDHYYQ-PGFTLVGGGLKSLDSSRR---------------- 97 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcC-CCceEEecchhhcccC-cceEEeccchhhhhhccC----------------
Confidence 3456899999999999999999988754 6799999999888776 4432 211211111110
Q ss_pred CHhHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCC----CCCCcEEEecCHHHHHHHH
Q 010917 135 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALI 210 (497)
Q Consensus 135 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g----~~~~gv~~~~~~~~~~~~~ 210 (497)
....+--.+...+. ..|..++++.++|.+.+|++|.||++|||+|..-+ +..++| .+.|+|-...+....+...
T Consensus 98 ~~a~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y 175 (446)
T KOG3851|consen 98 KQASLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVY 175 (446)
T ss_pred cccccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHH
Confidence 00011111222222 46788899999999999999999999999998755 455554 3456776666555555554
Q ss_pred Hhhc---cCCeEE--------EEcCCHHHHHHHHH-HHhCCCc--EEEEec--CCcchhhccCHHHHHHHHHHHHHCCcE
Q 010917 211 SSLE---KAKKVV--------VVGGGYIGMEVAAA-AVGWKLD--TTIIFP--ENHLLQRLFTPSLAQRYEQLYQQNGVK 274 (497)
Q Consensus 211 ~~~~---~~~~vv--------VvG~G~~g~e~A~~-l~~~g~~--Vtlv~~--~~~~~~~~~~~~~~~~~~~~l~~~GV~ 274 (497)
+.+. .+.-+- .-|+-.-.+-++.. ++++|.+ +.++.. -+.++. -....+.+++..++++|+
T Consensus 176 ~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~ 252 (446)
T KOG3851|consen 176 KELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNIT 252 (446)
T ss_pred HHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceE
Confidence 4433 333222 23444444444444 4556653 444433 333332 245678888889999999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecC-CCCC-CCCcEEEe
Q 010917 275 FVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAI 349 (497)
Q Consensus 275 i~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~-~~~t-~~~~iya~ 349 (497)
+.......++..+ +...+--.+.+ | ++++++++-+....++. +.+..+.+.+..|++.||. .+|. ..||||++
T Consensus 253 vn~krnLiEV~~~-~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgi 330 (446)
T KOG3851|consen 253 VNYKRNLIEVRTN-DRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGI 330 (446)
T ss_pred eeeccceEEEecc-chhhHHHhcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceee
Confidence 9999999998754 22111111222 4 47899999998888775 7788888887789999998 5664 89999999
Q ss_pred ccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917 350 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 350 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~ 384 (497)
|||.+.|+.. +......|...+-+|+.
T Consensus 331 GDc~n~PnsK--------TaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 331 GDCMNLPNSK--------TAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ccccCCCchh--------hHHHHHhcCchhhhhHH
Confidence 9999988743 22233345566666764
No 84
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.84 E-value=1e-22 Score=185.60 Aligned_cols=188 Identities=30% Similarity=0.480 Sum_probs=129.9
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 141 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (497)
|||||||||||++||.+|++.++ +++|+|+.+..+|....++...+.............. .....+.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 70 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPAR-------LFKLVDQLKN 70 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHH-------HGHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCC---eEEEEeccccccccccccccccccccccccccccccc-------cccccccccc
Confidence 69999999999999999998887 8999998876544333222211110000000000000 0012233467
Q ss_pred cCcEEEeCCcEEEEecCCCEE----------EECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHH
Q 010917 142 KGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 211 (497)
Q Consensus 142 ~~v~~~~~~~v~~i~~~~~~v----------~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~ 211 (497)
.+++++.++++.+++...+.+ ...++.++.||+||+|||+.+.. |.++|. +.....+...++..+..
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~ 147 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLE 147 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHT
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccc
Confidence 899998889999999988742 22345689999999999998764 455553 22223356667888887
Q ss_pred hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCc
Q 010917 212 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 291 (497)
Q Consensus 212 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~ 291 (497)
....+++++|||
T Consensus 148 ~~~~~~~v~VvG-------------------------------------------------------------------- 159 (201)
T PF07992_consen 148 LLESPKRVAVVG-------------------------------------------------------------------- 159 (201)
T ss_dssp HSSTTSEEEEES--------------------------------------------------------------------
T ss_pred cccccccccccc--------------------------------------------------------------------
Confidence 777777999999
Q ss_pred EEEEEeCCCcEEEcCEEEEeccCcCCCcch-hhcCCccc-CCCEEecCCCCCCCCcEEEeccccccC
Q 010917 292 VAAVKLEDGSTIDADTIVIGIGAKPTVSPF-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP 356 (497)
Q Consensus 292 v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~-~~~gl~~~-~g~i~vd~~~~t~~~~iya~GD~~~~~ 356 (497)
.+++ +..+++.+ +|++.||+++||+.|||||+|||+..+
T Consensus 160 --------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 --------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp --------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred --------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 3555 78888874 688999999999999999999999864
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.76 E-value=3.6e-18 Score=155.80 Aligned_cols=178 Identities=22% Similarity=0.321 Sum_probs=101.0
Q ss_pred EEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC----CCCC-CccccCCCCCCCCCCCCCc------------
Q 010917 64 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YE----RPAL-TKGYLFPLDKKPARLPGFH------------ 124 (497)
Q Consensus 64 vIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~----~~~l-~~~~l~~~~~~~~~~~~~~------------ 124 (497)
+|||||||||++|.+|.++|.+ +++|+|+++... +. .+.+ +..........+ ++..+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLP-DFESFSFDDSPEWRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS---CCCHSCHHHHHHHHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCC-cccccccccCCCCCCCcc
Confidence 7999999999999999999982 399999986542 11 0111 000000000000 000000
Q ss_pred cccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCC--CCCcCCCCCC-CCCCcEEE
Q 010917 125 TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHY 199 (497)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~--~~~~~~~~~g-~~~~gv~~ 199 (497)
.....+..+++..+.++++++++++++|+++..+. ..|++++++.+.+|+||+|||. .|. .|.+++ ... ...+
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h 155 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIH 155 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEE
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEe
Confidence 01111122344555677899999999999998765 4788888888999999999996 454 454555 222 2222
Q ss_pred ecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc
Q 010917 200 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 251 (497)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 251 (497)
..++.+.. ..++++|+|||+|.+|+++|..|++.|.+|+++.|++..
T Consensus 156 ~~~~~~~~-----~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 156 SADWRDPE-----DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp GGG-STTG-----GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred hhhcCChh-----hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 22221111 246799999999999999999999999999999998753
No 86
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.72 E-value=2e-16 Score=157.19 Aligned_cols=289 Identities=15% Similarity=0.204 Sum_probs=158.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917 58 NENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 136 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~-~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (497)
...++|+||||||||++||.+|. +.|+ +|+|+|+.+.+. .+.. +...+... .+ .. ....+.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pg----GLvR-~GVaPdh~--~~---k~-----v~~~f~ 98 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPY----GLIR-YGVAPDHI--HV---KN-----TYKTFD 98 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCc----cEEE-EeCCCCCc--cH---HH-----HHHHHH
Confidence 45679999999999999999865 5676 899999997642 1111 11111110 00 00 011122
Q ss_pred hHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCC--------CC-CCC----CCcEEEecCH
Q 010917 137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--------KI-GGY----LPGVHYIRDV 203 (497)
Q Consensus 137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~--------~~-g~~----~~gv~~~~~~ 203 (497)
..+...++++..+.++- ..++.++-. -.||+||+|||+.+..+|. +. |.+ ++|++..+++
T Consensus 99 ~~~~~~~v~f~gnv~VG------~Dvt~eeL~-~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~df 171 (506)
T PTZ00188 99 PVFLSPNYRFFGNVHVG------VDLKMEELR-NHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDL 171 (506)
T ss_pred HHHhhCCeEEEeeeEec------CccCHHHHH-hcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheE
Confidence 23444677776443321 112221112 3799999999998654331 00 332 4566544332
Q ss_pred -----HHHH-----HHHHh---hccCCeEEEEcCCHHHHHHHHHHH--------------------hCCC-cEEEEecCC
Q 010917 204 -----ADAD-----ALISS---LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPEN 249 (497)
Q Consensus 204 -----~~~~-----~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~--------------------~~g~-~Vtlv~~~~ 249 (497)
.+.+ ..... +...++++|||+|++++++|..|. +.+. +|+++.|+.
T Consensus 172 V~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRG 251 (506)
T PTZ00188 172 IYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRG 251 (506)
T ss_pred EEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecC
Confidence 1111 11111 124578999999999999999753 2233 588887772
Q ss_pred cchhhc-----------------cCH-H-----------------------HHHHHHHHHH----------HCCcEEEcC
Q 010917 250 HLLQRL-----------------FTP-S-----------------------LAQRYEQLYQ----------QNGVKFVKG 278 (497)
Q Consensus 250 ~~~~~~-----------------~~~-~-----------------------~~~~~~~~l~----------~~GV~i~~~ 278 (497)
..-..+ +++ + ..+.+.+..+ .+-+.+++.
T Consensus 252 p~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~ 331 (506)
T PTZ00188 252 FWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFY 331 (506)
T ss_pred HHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEcc
Confidence 110000 000 0 1112222221 134677888
Q ss_pred CeEEEEEeCCCCcEEEEEeC-----------CC--cEEEcCEEEEeccCcCCCcchhhcCCcccCCCEEecCCCCC--CC
Q 010917 279 ASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT--RM 343 (497)
Q Consensus 279 ~~v~~i~~~~~~~v~~v~~~-----------~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t--~~ 343 (497)
.++.+|.. .++++..+.+. .| ++++||+|+-++|++... +.. +..++ .+.. ...+. ..
T Consensus 332 ~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~g--~pFd~-~~~n-~~grv~~~~ 404 (506)
T PTZ00188 332 FEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FAE--NLYNQ-SVQM-FKEDIGQHK 404 (506)
T ss_pred CCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CCC--CCccc-cCCC-CCCcccCCC
Confidence 88888874 24677777665 23 369999999999998642 222 22221 1211 11222 36
Q ss_pred CcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 010917 344 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 383 (497)
Q Consensus 344 ~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i 383 (497)
|++|++|=+-..|....|. +..+|...+..+...+
T Consensus 405 ~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~ 439 (506)
T PTZ00188 405 FAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL 439 (506)
T ss_pred CCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence 9999999999877765443 2334555555444443
No 87
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.70 E-value=2.7e-16 Score=153.26 Aligned_cols=248 Identities=21% Similarity=0.302 Sum_probs=131.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcc------ccCCCC-----CCCCCCCCCccccC-
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YLFPLD-----KKPARLPGFHTCVG- 128 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~------~l~~~~-----~~~~~~~~~~~~~~- 128 (497)
+|+++||.||++|+.|..|.+.+ ..++..+|+.+.+.|+...+..+ ++.+.- ..+..+..+....+
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred eeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 69999999999999999999987 34899999998877764333222 111100 01111100000000
Q ss_pred ------CCCCCCC-------HhHHH-HcCcEEEeCCcEEEEecCC------CEEEEC----CCcEEEeccEEeccCCCCC
Q 010917 129 ------SGGERQT-------PEWYK-EKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 129 ------~~~~~~~-------~~~~~-~~~v~~~~~~~v~~i~~~~------~~v~~~----~g~~i~~d~lvlAtG~~~~ 184 (497)
.....-. ..|+. +..-.+..+.+|+.|++.. .+|.+. +++.+.++.||+|||..|.
T Consensus 81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 81 LYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR 160 (341)
T ss_dssp HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE-
T ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC
Confidence 0000001 11222 2344477889999998754 356662 3468999999999998876
Q ss_pred cCCCCCCC-C-CCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchh-------
Q 010917 185 RFPEKIGG-Y-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ------- 253 (497)
Q Consensus 185 ~~~~~~g~-~-~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~------- 253 (497)
+|..... . .+.+.+..++.... +.....++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+
T Consensus 161 -iP~~~~~~~~~~~v~Hss~~~~~~---~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ 236 (341)
T PF13434_consen 161 -IPEWFQDLPGSPRVFHSSEYLSRI---DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFV 236 (341)
T ss_dssp ---GGGGGGTT-TTEEEGGGHHHHH---T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCH
T ss_pred -CCcchhhcCCCCCEEEehHhhhcc---ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccch
Confidence 4533221 1 25566654333221 114578999999999999999999998875 7999999865432
Q ss_pred -hccCHH-------------------------------HHHHHHHH-----H-HHCCcEEEcCCeEEEEEeCCCCcEEEE
Q 010917 254 -RLFTPS-------------------------------LAQRYEQL-----Y-QQNGVKFVKGASIKNLEAGSDGRVAAV 295 (497)
Q Consensus 254 -~~~~~~-------------------------------~~~~~~~~-----l-~~~GV~i~~~~~v~~i~~~~~~~v~~v 295 (497)
..++|+ +.+.+.+. + .+..++++.++.|++++..+++.+ .+
T Consensus 237 ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l 315 (341)
T PF13434_consen 237 NEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RL 315 (341)
T ss_dssp HGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EE
T ss_pred hhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EE
Confidence 122332 22111111 1 234588999999999988765443 34
Q ss_pred EeCC---C--cEEEcCEEEEeccCc
Q 010917 296 KLED---G--STIDADTIVIGIGAK 315 (497)
Q Consensus 296 ~~~~---g--~~i~~D~vv~a~G~~ 315 (497)
.+.+ + +++++|.||+|||++
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---EE
T ss_pred EEEECCCCCeEEEecCEEEEcCCcc
Confidence 4443 2 478999999999985
No 88
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.69 E-value=3.9e-16 Score=145.65 Aligned_cols=156 Identities=20% Similarity=0.269 Sum_probs=99.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 136 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (497)
....++|.|||+||||+.+|..|.++ ++...|+++|+.+.+ | .|..-.+.|.++..... ...+.
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~PvP-F---GLvRyGVAPDHpEvKnv-----------intFt 80 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPVP-F---GLVRYGVAPDHPEVKNV-----------INTFT 80 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCcc-c---ceeeeccCCCCcchhhH-----------HHHHH
Confidence 34456999999999999999999997 346799999999864 2 12211122322222111 12344
Q ss_pred hHHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHH-------HHH
Q 010917 137 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-------DAL 209 (497)
Q Consensus 137 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~-------~~~ 209 (497)
+.+++....+..+..| ...+.+..- +-.||.+|||+|+...+-..+||.++.+|...+.+-.. ..+
T Consensus 81 ~~aE~~rfsf~gNv~v------G~dvsl~eL-~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~l 153 (468)
T KOG1800|consen 81 KTAEHERFSFFGNVKV------GRDVSLKEL-TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNL 153 (468)
T ss_pred HHhhccceEEEeccee------cccccHHHH-hhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccccc
Confidence 4455556666655444 111111111 24799999999998665567889888998876543221 111
Q ss_pred HHhhccCCeEEEEcCCHHHHHHHHHHH
Q 010917 210 ISSLEKAKKVVVVGGGYIGMEVAAAAV 236 (497)
Q Consensus 210 ~~~~~~~~~vvVvG~G~~g~e~A~~l~ 236 (497)
.-.+ .+.+|+|||.|..++++|..|.
T Consensus 154 e~dl-s~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 154 EPDL-SGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred Cccc-ccceEEEEccCchhhhhhhhhh
Confidence 1112 3689999999999999999874
No 89
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.69 E-value=3.3e-15 Score=143.51 Aligned_cols=179 Identities=23% Similarity=0.395 Sum_probs=106.5
Q ss_pred EEEeccEEeccCCCCCcCCCCC--C-CCCCcEEEecCHHHHHHHHHhh-------------ccCCeEEEE---cCCH---
Q 010917 169 LLKYGSLIVATGCTASRFPEKI--G-GYLPGVHYIRDVADADALISSL-------------EKAKKVVVV---GGGY--- 226 (497)
Q Consensus 169 ~i~~d~lvlAtG~~~~~~~~~~--g-~~~~gv~~~~~~~~~~~~~~~~-------------~~~~~vvVv---G~G~--- 226 (497)
++....+|+|||-.+....... | ...++|.+ -.+.+++.... ..+|+|+.| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT---~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVIT---NLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhh---HHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 5678899999998765322111 1 01222222 12333333211 245777765 5432
Q ss_pred -----------HHHHHHHHHHhC--CCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEE
Q 010917 227 -----------IGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 293 (497)
Q Consensus 227 -----------~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~ 293 (497)
.++--|....++ ..+|+++...-+ .++...-+++.+.-++.||+++.+ ++.+|...+++.+
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR----afG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l- 448 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR----AFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL- 448 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee----ccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee-
Confidence 122233333333 246787765543 345555666766666889999987 4777776666652
Q ss_pred EEEeCC---C--cEEEcCEEEEeccCcCCCc---chhhcCCccc-CCCEEec-CCC---CCCCCcEEEeccccccC
Q 010917 294 AVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD-GQF---RTRMPGIFAIGDVAAFP 356 (497)
Q Consensus 294 ~v~~~~---g--~~i~~D~vv~a~G~~p~~~---~~~~~gl~~~-~g~i~vd-~~~---~t~~~~iya~GD~~~~~ 356 (497)
.|..+| | .++++|+||+++|..|... +.+-+||..+ +|+++.. +.+ +|+.++||.+|-|.++.
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPk 524 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPK 524 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCc
Confidence 344333 3 4799999999999998643 3566788765 5676654 334 36889999999776643
No 90
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.68 E-value=5.9e-16 Score=156.49 Aligned_cols=184 Identities=18% Similarity=0.241 Sum_probs=114.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCC--CCCCcccc-CCCCCC--CCCCCCCc
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YER--PALTKGYL-FPLDKK--PARLPGFH 124 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~--~~l~~~~l-~~~~~~--~~~~~~~~ 124 (497)
..+..+|+|||||++||++|++|++.|.+ +++++||+.... |.. ...++.++ ++.... ...++.+.
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~ 82 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA 82 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence 45678999999999999999999999983 399999996432 110 11111111 111111 11121111
Q ss_pred cccCCCCCCCCHhHHHHcCcE--EEeCCcEEEEecCCC----EEEECCCcE--EEeccEEeccCCC--CCcCCCCCCCCC
Q 010917 125 TCVGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ----TLITNSGKL--LKYGSLIVATGCT--ASRFPEKIGGYL 194 (497)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~g~~--i~~d~lvlAtG~~--~~~~~~~~g~~~ 194 (497)
....+..++++++++. +..++.|..++.+.. +|+++++.. +.+|.||+|||.. |. .|.++|.+.
T Consensus 83 -----~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~~ 156 (443)
T COG2072 83 -----EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLDE 156 (443)
T ss_pred -----cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCccC
Confidence 1123445566666654 444555655655442 677877765 4599999999963 32 344444332
Q ss_pred CcEEEecCHHHHHHHHH-hhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch
Q 010917 195 PGVHYIRDVADADALIS-SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 252 (497)
Q Consensus 195 ~gv~~~~~~~~~~~~~~-~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 252 (497)
.....++ +....+ ....+|+|+|||+|.+|++++..|.+.|.+||++.|++...
T Consensus 157 f~g~~~H----S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 157 FKGRILH----SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred CCceEEc----hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 2211221 222111 23479999999999999999999999999999999986543
No 91
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.68 E-value=1.4e-14 Score=137.38 Aligned_cols=293 Identities=17% Similarity=0.211 Sum_probs=178.4
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcccc----------CCCC-C----------
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL----------FPLD-K---------- 115 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l----------~~~~-~---------- 115 (497)
++...|++.||-||+-|+.|..|.+.+. .+...+|+.+.+.|+..++..+.. ...+ .
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 4556899999999999999999998763 479999999988777443332211 0000 0
Q ss_pred CCCCCCCCccccCCCC----CCCCHhHHHHcCcEEEeCCcEE---EEecCCC---EEEECCCcEEEeccEEeccCCCCCc
Q 010917 116 KPARLPGFHTCVGSGG----ERQTPEWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 116 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~v~---~i~~~~~---~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
...++-.|........ ...+-.|....--.++++++|+ .++.+.. .+.+.++..+.++.|||++|..|..
T Consensus 80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 0011111111110000 0112234444445678888998 4444433 2566777789999999999999874
Q ss_pred CCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEecCCcchhh-------
Q 010917 186 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQR------- 254 (497)
Q Consensus 186 ~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~~------- 254 (497)
++......-+.+++... ....+..+...++|.|||+|.+|.|+-..|... ..++.++.|+..+.+.
T Consensus 160 P~~f~~l~~~~vfHss~---~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~ 236 (436)
T COG3486 160 PPCFRSLIGERVFHSSE---YLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL 236 (436)
T ss_pred ChHHhCcCccceeehHH---HHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence 33222211233444321 111122233445599999999999999998654 3357889998665542
Q ss_pred -ccCHHHHH------------------------------HHHHHH-------HHCCcEEEcCCeEEEEEeCCCCcEEEEE
Q 010917 255 -LFTPSLAQ------------------------------RYEQLY-------QQNGVKFVKGASIKNLEAGSDGRVAAVK 296 (497)
Q Consensus 255 -~~~~~~~~------------------------------~~~~~l-------~~~GV~i~~~~~v~~i~~~~~~~v~~v~ 296 (497)
.+.|+..+ .+-+.| .+..|.++.++.+..++..++|++ .+.
T Consensus 237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~ 315 (436)
T COG3486 237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLT 315 (436)
T ss_pred hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEE
Confidence 11222111 111111 245789999999999998777753 333
Q ss_pred e-----CCCcEEEcCEEEEeccCcCCCc-chhhcC--Cc-ccCCCEEecCCCCCCC-----CcEEEecccccc
Q 010917 297 L-----EDGSTIDADTIVIGIGAKPTVS-PFERVG--LN-SSVGGIQVDGQFRTRM-----PGIFAIGDVAAF 355 (497)
Q Consensus 297 ~-----~~g~~i~~D~vv~a~G~~p~~~-~~~~~g--l~-~~~g~i~vd~~~~t~~-----~~iya~GD~~~~ 355 (497)
+ ...++++.|.||+|||++...+ +++.+. +. +++|...|+..++... -.||+.|-+...
T Consensus 316 ~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 316 LRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred EeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence 3 2335899999999999985544 666554 22 3567899998776521 259999977653
No 92
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=5.7e-16 Score=154.24 Aligned_cols=243 Identities=19% Similarity=0.259 Sum_probs=144.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCC----------------CCCcccc-CCCCCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP----------------ALTKGYL-FPLDKKPA 118 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~--~~~~----------------~l~~~~l-~~~~~~~~ 118 (497)
+..++|+|||||||||++|+.|.+.|+ +++++|+.+... |..+ .+++.+. ++..+.+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~ 80 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE 80 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence 456899999999999999999999998 899999998543 1111 1122111 11122222
Q ss_pred CCCCCccccCCCCCCCCHhHHHHcCc--EEEeCCcEEEEecCC---CEEEECCC----cEEEeccEEeccCCCC-CcCCC
Q 010917 119 RLPGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFPE 188 (497)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~---~~v~~~~g----~~i~~d~lvlAtG~~~-~~~~~ 188 (497)
+.+.+. ....+..+++..+.++.++ .+.++++|..++... ..|.+.++ +..-||.|++|||-.. ..+|.
T Consensus 81 ~~~~~~-p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 81 RDPRYF-PSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred cCcccC-CCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence 211110 0000112344455556665 477788888887765 25555443 3678999999999873 12455
Q ss_pred CCCC---CCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHH
Q 010917 189 KIGG---YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 265 (497)
Q Consensus 189 ~~g~---~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~ 265 (497)
+++. ..+| ..++..+.-......+|+|+|||+|.+|+|++..++....+|++..+ .-.... ..+
T Consensus 160 ~~g~~~~~f~G----~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~------- 226 (448)
T KOG1399|consen 160 IPGPGIESFKG----KIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPP------- 226 (448)
T ss_pred CCCCchhhcCC----cceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-ccc-------
Confidence 4442 1222 11111222122234689999999999999999999999888887754 100000 000
Q ss_pred HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcC
Q 010917 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 325 (497)
Q Consensus 266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~g 325 (497)
. .-..++..+.. |..+++ ++ .+.+.++....+|.+|+|+|+.-...+++..+
T Consensus 227 ~-~~~~~~~~~~~--i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 227 E-ILGENLWQVPS--IKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred c-eeecceEEccc--cccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 0 01112333222 555542 32 35566777889999999999998777776553
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.64 E-value=2.8e-14 Score=142.24 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=113.4
Q ss_pred EEEcCCHHHHHHH-HHHH----hCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917 220 VVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 294 (497)
Q Consensus 220 vVvG~G~~g~e~A-~~l~----~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~ 294 (497)
+|++.+.+|+|.+ ..+. ++|.+|+++...+..++. .++.+.+.+.+++.|++++++++|.+++.. ++.+..
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~ 294 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTA 294 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEE
Confidence 6789999999999 6664 579999999988887764 378888999999999999999999999865 455555
Q ss_pred EEeCCCc--EEEcCEEEEeccCcCCCcch-----------------------------------hhcCCcccCCCEEecC
Q 010917 295 VKLEDGS--TIDADTIVIGIGAKPTVSPF-----------------------------------ERVGLNSSVGGIQVDG 337 (497)
Q Consensus 295 v~~~~g~--~i~~D~vv~a~G~~p~~~~~-----------------------------------~~~gl~~~~g~i~vd~ 337 (497)
+...+++ .+++|.||+|+|..++..+. ...|+.+++....+|.
T Consensus 295 v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~ 374 (422)
T PRK05329 295 VWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDS 374 (422)
T ss_pred EEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccC
Confidence 5555553 58999999999987654431 2233333333333444
Q ss_pred CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917 338 QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 338 ~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
..++..+|+||+|++.+.+++..-.. --..|...|..|+++|..
T Consensus 375 ~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 375 QGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAE 418 (422)
T ss_pred CCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHH
Confidence 55556899999999999887542111 112366677777777763
No 94
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.53 E-value=1.7e-12 Score=126.94 Aligned_cols=313 Identities=20% Similarity=0.295 Sum_probs=169.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCCcccc-CCCCCCCCCCCC----CccccCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYL-FPLDKKPARLPG----FHTCVGSG 130 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~l-~~~~~~~~~~~~----~~~~~~~~ 130 (497)
+++|+|||||++|+..|.+|.+.--....|+|+|+.+.+ +|+... +...+ .+........|. |..|....
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~-p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~ 79 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEE-PEHLLNVPAARMSAFAPDIPQDFVRWLQKQ 79 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCC-chhhhccccccccccCCCCchHHHHHHHhc
Confidence 379999999999999999999976444559999998754 344211 10011 000000000010 11111000
Q ss_pred -------------CCCCC-------------HhHHHHcC---cEEEeCCcEEEEecCC----CEEEECCCcEEEeccEEe
Q 010917 131 -------------GERQT-------------PEWYKEKG---IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIV 177 (497)
Q Consensus 131 -------------~~~~~-------------~~~~~~~~---v~~~~~~~v~~i~~~~----~~v~~~~g~~i~~d~lvl 177 (497)
...+. ..++++.. +.++. ++++++.... ..+...+|....+|-+|+
T Consensus 80 ~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vl 158 (474)
T COG4529 80 LQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVL 158 (474)
T ss_pred ccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEE
Confidence 00011 11112222 44443 4555555541 356777888889999999
Q ss_pred ccCCCCCcCCCCCCCCCCcE-EEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchhh
Q 010917 178 ATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR 254 (497)
Q Consensus 178 AtG~~~~~~~~~~g~~~~gv-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~ 254 (497)
|||..+...+. ...++++- .++.+...+.. +..+....+|+|+|+|.+.++....|.++|. .+|++.|+. +.++
T Consensus 159 atgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~-ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~ 235 (474)
T COG4529 159 ATGHSAPPADP-AARDLKGSPRLIADPYPANA-LDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPR 235 (474)
T ss_pred eccCCCCCcch-hhhccCCCcceeccccCCcc-cccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-cccC
Confidence 99976543222 11222211 12222222322 2234556779999999999999999999886 588888873 1110
Q ss_pred ------------cc------------------------------------------------------------------
Q 010917 255 ------------LF------------------------------------------------------------------ 256 (497)
Q Consensus 255 ------------~~------------------------------------------------------------------ 256 (497)
..
T Consensus 236 ~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr 315 (474)
T COG4529 236 PHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHR 315 (474)
T ss_pred CCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHH
Confidence 00
Q ss_pred ---CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEeccCcCCCc-----chhh--
Q 010917 257 ---TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVS-----PFER-- 323 (497)
Q Consensus 257 ---~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~~D~vv~a~G~~p~~~-----~~~~-- 323 (497)
.+.+...+.+.+.+.-++++-+ ++..|...+.+....+.... .+++++|.||-|+|..+... ++..
T Consensus 316 ~R~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~ 394 (474)
T COG4529 316 FRLAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLG 394 (474)
T ss_pred hhhhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHH
Confidence 0111111111112222344433 45555544444322222222 25789999999999876543 2332
Q ss_pred -cCCcc---cCCCEEecCCCCC------CCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917 324 -VGLNS---SVGGIQVDGQFRT------RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 324 -~gl~~---~~g~i~vd~~~~t------~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~ 384 (497)
-|+.. ...|+.|+++.+. ..+++|++|..+...... +..+..-..|+..+|..++
T Consensus 395 ~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~e------i~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 395 ENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWE------IDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred hCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhh------hccChHHHHHHHHHHHHHh
Confidence 34432 2467888887664 468899999888754211 2233344566666776666
No 95
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.50 E-value=3e-13 Score=103.06 Aligned_cols=80 Identities=39% Similarity=0.653 Sum_probs=74.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 297 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~ 297 (497)
+++|||+|++|+|+|..|++.|.+||++++.+.++ +.+++++...+.+.++++||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 68999999999999999999999999999999999 4689999999999999999999999999999987777 66 888
Q ss_pred CCC
Q 010917 298 EDG 300 (497)
Q Consensus 298 ~~g 300 (497)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 886
No 96
>PRK09897 hypothetical protein; Provisional
Probab=99.36 E-value=2.7e-10 Score=117.10 Aligned_cols=170 Identities=16% Similarity=0.130 Sum_probs=95.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCCCCccccCCC--CCCCCCCCCCcccc------
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPALTKGYLFPL--DKKPARLPGFHTCV------ 127 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~----~~~~~l~~~~l~~~--~~~~~~~~~~~~~~------ 127 (497)
+++|+||||||+|+++|.+|.+.+. ..+|+|||+..... |....-+..++... ...+...+.+..|.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence 3689999999999999999998764 56899999975432 33211111001000 00000000011110
Q ss_pred -------------------CCCCCCCCHhH-------HHHcC--cEEEeCCcEEEEecCCC--EEEECC-CcEEEeccEE
Q 010917 128 -------------------GSGGERQTPEW-------YKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI 176 (497)
Q Consensus 128 -------------------~~~~~~~~~~~-------~~~~~--v~~~~~~~v~~i~~~~~--~v~~~~-g~~i~~d~lv 176 (497)
...+-.++... +...| +.++.+++|+.++.... .+++++ +..+.+|+||
T Consensus 80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence 00000111111 12334 67777889999977654 455544 4678999999
Q ss_pred eccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHHHhC
Q 010917 177 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 238 (497)
Q Consensus 177 lAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~ 238 (497)
+|||..+...+ .+ .+ .++.+..+.. ..... .+.+|+|+|.|+++++++..|...
T Consensus 160 LAtGh~~p~~~--~~--~~--~yi~~pw~~~-~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 160 IATGHVWPDEE--EA--TR--TYFPSPWSGL-MEAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred ECCCCCCCCCC--hh--hc--cccCCCCcch-hhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 99997532111 11 11 1222222221 11223 368999999999999999999765
No 97
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.31 E-value=5.5e-12 Score=120.32 Aligned_cols=121 Identities=26% Similarity=0.256 Sum_probs=77.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCCc-----cccC--C------------
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK-----GYLF--P------------ 112 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~~-----~~l~--~------------ 112 (497)
+.+||+|||||||||.||..++++|+ +|+|||+.+... -.|++..+ .|+. +
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHh
Confidence 45899999999999999999999998 899999998321 00111100 0000 0
Q ss_pred ------------C-CCCCCCCCCCcccc---CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEecc
Q 010917 113 ------------L-DKKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGS 174 (497)
Q Consensus 113 ------------~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~ 174 (497)
. -.....-.+...+. .....+.+...+++.||+++++++|.+++.+. ..+.+.+|+++.+|.
T Consensus 79 ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 79 FTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 0 00000000000000 01111223445677899999999999999875 678888998899999
Q ss_pred EEeccCCC
Q 010917 175 LIVATGCT 182 (497)
Q Consensus 175 lvlAtG~~ 182 (497)
||||||..
T Consensus 159 lilAtGG~ 166 (408)
T COG2081 159 LILATGGK 166 (408)
T ss_pred EEEecCCc
Confidence 99999943
No 98
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.27 E-value=4.8e-10 Score=110.67 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=88.2
Q ss_pred hhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEeccCcCCCcchhhc------
Q 010917 253 QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV------ 324 (497)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~~D~vv~a~G~~p~~~~~~~~------ 324 (497)
|...+..+.+.+.+.+++.|++++.+.+|.++... ++++..+.+.++ ..+.+|.+|+|+|.--...++++.
T Consensus 258 PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Ep 336 (419)
T TIGR03378 258 PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEP 336 (419)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeee
Confidence 34455677888999999999999999999998754 566667776776 479999999999987222333321
Q ss_pred --CCcc--------------------cCCCEEecCCCCC-----CCCcEEEeccccccCCccCCcccccccHHHHHHHHH
Q 010917 325 --GLNS--------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 377 (497)
Q Consensus 325 --gl~~--------------------~~g~i~vd~~~~t-----~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~ 377 (497)
++++ ..=||.+|+++|. ..+|+||+|-+.+..++..-.. -...|+..|.
T Consensus 337 if~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gc----G~GVai~Ta~ 412 (419)
T TIGR03378 337 IFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGC----GSGVAVSTAL 412 (419)
T ss_pred ccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCC----CchhHHHHHH
Confidence 1211 1126889999883 3799999999999877643111 0123667777
Q ss_pred HHHHHH
Q 010917 378 HCIKAL 383 (497)
Q Consensus 378 ~~a~~i 383 (497)
.||+.|
T Consensus 413 ~aa~~i 418 (419)
T TIGR03378 413 HAAEQI 418 (419)
T ss_pred HHHHhh
Confidence 777766
No 99
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.12 E-value=2.7e-10 Score=111.44 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=43.0
Q ss_pred CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 010917 330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 386 (497)
Q Consensus 330 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~~ 386 (497)
-|||.||.+.||+.|++||+|.|+.....-.++.+ ..+.-.+...|..+|++|.+.
T Consensus 341 mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 341 MGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred cccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence 48999999999999999999999986543333332 234456788889999999864
No 100
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.07 E-value=9.8e-11 Score=116.67 Aligned_cols=120 Identities=28% Similarity=0.381 Sum_probs=60.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCCc------cccCCCCCCCCCC-------
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK------GYLFPLDKKPARL------- 120 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-------~~~~~l~~------~~l~~~~~~~~~~------- 120 (497)
+||+|||||||||.||..|++.|. +|+|+|+++... -.|..++. .|..........+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence 689999999999999999999998 899999997431 00111110 0100000000000
Q ss_pred -----------CCCcccc---C-----C----CCCCCCHhHHHHcCcEEEeCCcEEEEecCCC---EEEECCCcEEEecc
Q 010917 121 -----------PGFHTCV---G-----S----GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGS 174 (497)
Q Consensus 121 -----------~~~~~~~---~-----~----~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~ 174 (497)
.+..... + . .....+...+++.|++++++++|.++..++. .|.++++..+.+|+
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 0000000 0 0 0001122334677999999999999976543 46776778899999
Q ss_pred EEeccCCCC
Q 010917 175 LIVATGCTA 183 (497)
Q Consensus 175 lvlAtG~~~ 183 (497)
||||||+..
T Consensus 158 vILAtGG~S 166 (409)
T PF03486_consen 158 VILATGGKS 166 (409)
T ss_dssp EEE----SS
T ss_pred EEEecCCCC
Confidence 999999864
No 101
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.06 E-value=7.7e-10 Score=113.58 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=30.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
+||+|||||.|||+||..+++.|. +|+|+||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~---~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGF---DVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 799999999999999999999987 899999974
No 102
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.04 E-value=3.3e-09 Score=98.05 Aligned_cols=129 Identities=18% Similarity=0.250 Sum_probs=85.3
Q ss_pred hhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeccCcCCCcchh-------
Q 010917 252 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE------- 322 (497)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~~D~vv~a~G~~p~~~~~~------- 322 (497)
.|..++-.+.+.+...+++.|..+.++-.|.+.+- .+++++.|.+.+... +.+|..|+|+|.--...+..
T Consensus 252 PPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~E 330 (421)
T COG3075 252 PPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYE 330 (421)
T ss_pred CcchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhc
Confidence 33445566788899999999999999999999875 478888999888765 55999999999643322211
Q ss_pred ---hcCCc---c---------------cCCCEEecCCCCCC-----CCcEEEeccccccCCccCCcccccccHHHHHHHH
Q 010917 323 ---RVGLN---S---------------SVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 376 (497)
Q Consensus 323 ---~~gl~---~---------------~~g~i~vd~~~~t~-----~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g 376 (497)
++.+. . ..=||.+|+++|-+ ..|+||||.+.+.+++..-... -..+...|
T Consensus 331 PIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcG----sGVaivta 406 (421)
T COG3075 331 PIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCG----SGVAIVTA 406 (421)
T ss_pred chhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCC----cchHHHHH
Confidence 11110 0 11257888888753 5789999999988775421110 01244455
Q ss_pred HHHHHHHhc
Q 010917 377 QHCIKALLS 385 (497)
Q Consensus 377 ~~~a~~i~~ 385 (497)
..+|..|+.
T Consensus 407 ~~aa~qi~~ 415 (421)
T COG3075 407 LHAAEQIAE 415 (421)
T ss_pred HHHHHHHHH
Confidence 555555553
No 103
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.99 E-value=6.5e-09 Score=107.47 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=38.2
Q ss_pred cCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917 329 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 329 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
.-|||.+|.+.+|++||+||+|+|+.....-.++.. -.+...|...|+.+++++..
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999742111011111 22455677788888887764
No 104
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.98 E-value=7.4e-10 Score=116.65 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=79.3
Q ss_pred HHhhccCCeEEEEcCCH--HHHHHHHHHHhCCCcEEEEecCCcchhhc-------------cCHHHHHHHHHHHHHCCcE
Q 010917 210 ISSLEKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVK 274 (497)
Q Consensus 210 ~~~~~~~~~vvVvG~G~--~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-------------~~~~~~~~~~~~l~~~GV~ 274 (497)
.+.....+++.|+|+++ ++.+++..+...+.+++++.+.+.++... ....+...+.+.+++.|++
T Consensus 151 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~ 230 (574)
T PRK12842 151 ARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIP 230 (574)
T ss_pred HhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCE
Confidence 33344668889999998 89999999999998888776555544321 1234666677888899999
Q ss_pred EEcCCeEEEEEeCCCCcEEEEEeCC--Cc-EEEcC-EEEEeccCcCC
Q 010917 275 FVKGASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT 317 (497)
Q Consensus 275 i~~~~~v~~i~~~~~~~v~~v~~~~--g~-~i~~D-~vv~a~G~~p~ 317 (497)
++.++.++++... ++++.+|...+ ++ .+.++ .||+|+|..++
T Consensus 231 i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 231 ILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred EEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 9999999998854 57777776643 33 47786 79999997664
No 105
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=101.04 Aligned_cols=217 Identities=20% Similarity=0.279 Sum_probs=119.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCC-CCCCCCCCCccccCCCCCCCCHh
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD-KKPARLPGFHTCVGSGGERQTPE 137 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 137 (497)
+++||+|||||+-|+++|+.|+++.. +.+|+|+||++....+......+...... ..+..+... ..........+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p-~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~---l~~~g~~~~~~ 77 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEP-DLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAK---LCVAGNINEFA 77 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCC-CceEEEEEccCccccccccCcccceeccccCCCcchhhH---HHHHHHHHHHH
Confidence 46899999999999999999999983 45999999998776554432222221110 001011000 00000001123
Q ss_pred HHHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCc-CCCCC-CCCCCcEEEecCHHHHHHHHHhhcc
Q 010917 138 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-FPEKI-GGYLPGVHYIRDVADADALISSLEK 215 (497)
Q Consensus 138 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~-~~~~~-g~~~~gv~~~~~~~~~~~~~~~~~~ 215 (497)
+++++++.+ +...++++|+|-.... +.... .....+++.. ...+.+.+.+..+.
T Consensus 78 ~~kq~~~~f-----------------------~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~-~~ld~~~i~~~eP~ 133 (429)
T COG0579 78 ICKQLGIPF-----------------------INCGKLSVATGEEEVERLEKLYERGKANGVFDL-EILDKEEIKELEPL 133 (429)
T ss_pred HHHHhCCcc-----------------------cccCeEEEEEChHHHHHHHHHHHHHhhCCCcce-eecCHHHHHhhCcc
Confidence 334444222 2236888998864321 10000 0001122211 11234444433221
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 295 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v 295 (497)
-..- ++|+ +..+...+. -..++...+.+.++++|++++++++|+.|+..++| +..+
T Consensus 134 l~~~-~~aa-------------------l~~p~~giV---~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~ 189 (429)
T COG0579 134 LNEG-AVAA-------------------LLVPSGGIV---DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVL 189 (429)
T ss_pred cccc-ceee-------------------EEcCCCceE---cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEE
Confidence 0000 1110 111111111 12245667777788899999999999999987665 5567
Q ss_pred EeCCCcE-EEcCEEEEeccCcCCCcchhhcCCcc
Q 010917 296 KLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS 328 (497)
Q Consensus 296 ~~~~g~~-i~~D~vv~a~G~~p~~~~~~~~gl~~ 328 (497)
.+.+|++ ++|+.||.|.|.... .+++.+|+..
T Consensus 190 ~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~ 222 (429)
T COG0579 190 NTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE 222 (429)
T ss_pred EecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence 8888876 999999999998765 5667666654
No 106
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.95 E-value=6.5e-09 Score=79.57 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=62.3
Q ss_pred ceeeeccccCCCCcceeeEEeecCCC--cEEEEccCC-CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHhCCCCCChh
Q 010917 396 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 472 (497)
Q Consensus 396 ~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (497)
||||+||+.. +|++|.... +++.+|+.+ .++..+|+++|+++|++. +|.+.++..++++++.+..++++
T Consensus 1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~ 72 (85)
T PF14759_consen 1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA 72 (85)
T ss_dssp EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence 7999999875 999998653 678888876 789999999999999995 89999999999999999999999
Q ss_pred hhcCCCc
Q 010917 473 KLQQASS 479 (497)
Q Consensus 473 ~~~~~~~ 479 (497)
.+.++..
T Consensus 73 ~l~d~~~ 79 (85)
T PF14759_consen 73 RLADPSV 79 (85)
T ss_dssp HHHSTTS
T ss_pred HhcCCCC
Confidence 8877654
No 107
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.93 E-value=5.5e-08 Score=101.67 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
....||||||+|.|||+||..+++.|. +|+|+||...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence 346899999999999999999999887 8999999764
No 108
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.90 E-value=2e-07 Score=97.91 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...||||||||.||++||..+++.|. +|+|+||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~---~V~lveK~~ 38 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGF---KVAVISKVF 38 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCC---cEEEEEccC
Confidence 45799999999999999999999887 899999975
No 109
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.87 E-value=3.3e-08 Score=104.11 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
..||||||||.|||+||..+++.|. ..+|+|+||..
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~ 39 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVY 39 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccC
Confidence 4699999999999999999998763 34899999975
No 110
>PRK06847 hypothetical protein; Provisional
Probab=98.86 E-value=9.4e-09 Score=103.03 Aligned_cols=123 Identities=20% Similarity=0.217 Sum_probs=74.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCcc------------ccC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKG------------YLF 111 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~------------~l~ 111 (497)
++++|+||||||||+++|..|++.|+ +|+|+|+.+...-... .+... +..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 45799999999999999999999998 8999999864211000 00000 000
Q ss_pred CCCCCCCCC----------CCCccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEecc
Q 010917 112 PLDKKPARL----------PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT 179 (497)
Q Consensus 112 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAt 179 (497)
........+ +.........+...+.+.+.+.|++++.+++|+.++.... .+.+.+|+++.+|.||.|+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence 000000000 0000000000011122334456899999999999876544 5667788889999999999
Q ss_pred CCCCC
Q 010917 180 GCTAS 184 (497)
Q Consensus 180 G~~~~ 184 (497)
|....
T Consensus 160 G~~s~ 164 (375)
T PRK06847 160 GLYSK 164 (375)
T ss_pred CCCcc
Confidence 98653
No 111
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.86 E-value=1.8e-08 Score=105.20 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=30.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
....||||||+|.||++||.++++ |. +|+||||.+.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~---~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HL---RVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CC---CEEEEEccCC
Confidence 345799999999999999999964 65 8999999863
No 112
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.85 E-value=1.3e-07 Score=98.15 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=38.2
Q ss_pred CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917 330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 330 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
-|||.+|.+.+|+.|++||+|+|+.....-.++.. -.+...+...|+.|++++..
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999752111001111 22455677888888888753
No 113
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.84 E-value=4e-07 Score=95.16 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=38.2
Q ss_pred cCCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917 329 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 329 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
.-|||.+|.+.+|+.|++||+|+|+.....-.++.. -.+...|...|+.|++++..
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred ecCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999742111111111 22455677778888877754
No 114
>PLN02815 L-aspartate oxidase
Probab=98.81 E-value=3.4e-07 Score=96.13 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
..||||||+|.|||+||..+++.| +|+|+||.+.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G----~VvlleK~~~ 62 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG----TVAIITKDEP 62 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC----CEEEEECCCC
Confidence 579999999999999999999976 5999999763
No 115
>PRK08275 putative oxidoreductase; Provisional
Probab=98.81 E-value=2.2e-08 Score=105.10 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=32.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
...||||||||.||++||..+++.|. ..+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence 34799999999999999999998752 348999999864
No 116
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.80 E-value=4.1e-08 Score=97.42 Aligned_cols=67 Identities=30% Similarity=0.489 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCC
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 326 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl 326 (497)
+..+.+.+.+.+++.|++++.+++|+++... ++.+.+|.+.+|+ +.+|.||+|+|.... .++..++.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 4577888888899999999999999999865 5667679999998 999999999998654 45555554
No 117
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=5.2e-08 Score=102.79 Aligned_cols=39 Identities=31% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
...||||||||.|||+||..+++.|....+|+|+||...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 357999999999999999999998711138999999763
No 118
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.78 E-value=3.8e-08 Score=103.39 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=31.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
..||+|||||.|||+||..+++.+. ..+|+|+||..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~-g~~V~lveK~~ 38 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANP-HLDVALISKVY 38 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccC
Confidence 4699999999999999999998753 34899999975
No 119
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.78 E-value=4.2e-08 Score=108.50 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=32.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
..+||||||||.|||+||.++++.|. +|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence 35799999999999999999999887 8999999763
No 120
>PRK10015 oxidoreductase; Provisional
Probab=98.75 E-value=2.8e-08 Score=100.88 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCCc---cccCCCC--CCC------------
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK---GYLFPLD--KKP------------ 117 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---~l~~---~~l~~~~--~~~------------ 117 (497)
..++||+||||||||++||+.|++.|+ +|+|||+.+....... .++. ..+.+.. ..+
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 79 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISF 79 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEE
Confidence 346899999999999999999999998 8999999875432110 0000 0000000 000
Q ss_pred --------CCCCC----CccccCCCCCC-C----CHhHHHHcCcEEEeCCcEEEEecCCCEE--EECCCcEEEeccEEec
Q 010917 118 --------ARLPG----FHTCVGSGGER-Q----TPEWYKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVA 178 (497)
Q Consensus 118 --------~~~~~----~~~~~~~~~~~-~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~g~~i~~d~lvlA 178 (497)
.++.. .....+....+ . +.+..++.|++++.+++|+.+..++..+ ...++.++.+|.+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A 159 (429)
T PRK10015 80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA 159 (429)
T ss_pred EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence 00000 00000000001 1 2223355799999999999887654433 2334567999999999
Q ss_pred cCCCC
Q 010917 179 TGCTA 183 (497)
Q Consensus 179 tG~~~ 183 (497)
+|...
T Consensus 160 dG~~s 164 (429)
T PRK10015 160 DGVNS 164 (429)
T ss_pred cCcch
Confidence 99753
No 121
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.75 E-value=2.9e-08 Score=100.88 Aligned_cols=121 Identities=21% Similarity=0.284 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCcccc--------CCCC--CCC-CCCC-----
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL--------FPLD--KKP-ARLP----- 121 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l--------~~~~--~~~-~~~~----- 121 (497)
..++||+||||||||++||..|+++|+ +|+|+|+.+...... ...+.+ .+.. ..+ .+..
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~--~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKN--VTGGRLYAHSLEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCcc--cccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence 346899999999999999999999998 899999986543211 000000 0000 000 0000
Q ss_pred ------C---Cccc-------cCCCC--C-----CCCHhHHHHcCcEEEeCCcEEEEecCCCE--EEECCCcEEEeccEE
Q 010917 122 ------G---FHTC-------VGSGG--E-----RQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLI 176 (497)
Q Consensus 122 ------~---~~~~-------~~~~~--~-----~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~g~~i~~d~lv 176 (497)
+ +... ....+ . ..+.+..++.|++++.+++|+.+..+... ....++.++.+|.||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI 157 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI 157 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence 0 0000 00000 0 01122334579999999999988654433 234566789999999
Q ss_pred eccCCCC
Q 010917 177 VATGCTA 183 (497)
Q Consensus 177 lAtG~~~ 183 (497)
.|+|...
T Consensus 158 ~A~G~~s 164 (428)
T PRK10157 158 LADGVNS 164 (428)
T ss_pred EEeCCCH
Confidence 9999753
No 122
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.75 E-value=3.1e-08 Score=99.75 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=74.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---CCcccc---CCCCCC--CCCC-------CCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKGYL---FPLDKK--PARL-------PGF 123 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~---l~~~~l---~~~~~~--~~~~-------~~~ 123 (497)
+++||+||||||||++||+.|++.|+ +|+|+|+.+...+.... ++...+ .+.... ...+ ++.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~ 78 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGE 78 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCC
Confidence 46899999999999999999999997 89999998765543211 111000 010000 0000 000
Q ss_pred ----------cccc-CCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCE--E-EECCCcEEEeccEEeccCCCCC
Q 010917 124 ----------HTCV-GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--L-ITNSGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 124 ----------~~~~-~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v-~~~~g~~i~~d~lvlAtG~~~~ 184 (497)
...+ ...+.+.+.+..++.|.+++.++++..+..++.. + +..++.++.++.+|.|+|....
T Consensus 79 ~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 79 KVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred ceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 0000 0001111223345679999999999988766532 2 2233357999999999997643
No 123
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.74 E-value=5.1e-08 Score=103.11 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=31.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY 97 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~ 97 (497)
..||||||||.|||+||.++++. |. +|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~---~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDL---KVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCC---eEEEEECCCc
Confidence 47999999999999999999998 76 8999999864
No 124
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.74 E-value=1.3e-07 Score=91.68 Aligned_cols=99 Identities=22% Similarity=0.317 Sum_probs=79.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc---ch--------hh----ccCHHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGASIK 282 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~~--------~~----~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 282 (497)
+|+|||+|+.|+++|..|.+.|.+|+++++.+. +. +. ..+.++...+.+.+++.|+++++ .++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997641 10 11 12357778888889999999998 7899
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917 283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 319 (497)
Q Consensus 283 ~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~ 319 (497)
+++..+ +. ..+.+.+++++.+|.+|+|+|..|+..
T Consensus 81 ~v~~~~-~~-~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDLSD-RP-FKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEecC-Ce-eEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 998643 22 246677888999999999999988643
No 125
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.73 E-value=5.3e-08 Score=93.99 Aligned_cols=120 Identities=23% Similarity=0.335 Sum_probs=70.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCCcc---cc----------------CCCCCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTKG---YL----------------FPLDKKPAR 119 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--~l~~~---~l----------------~~~~~~~~~ 119 (497)
+||+||||||||+++|..|++.|. +|+|+|+.+....... .+... .+ .........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 589999999999999999999988 8999999875322000 00000 00 000000000
Q ss_pred CCC----CccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECC-CcEEEeccEEeccCCCC
Q 010917 120 LPG----FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTA 183 (497)
Q Consensus 120 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~-g~~i~~d~lvlAtG~~~ 183 (497)
.+. ............+.+.+.+.|++++.+++++.+..+.. .+.+.+ +.++.+|+||+|+|...
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 000 00000001111223344567899999999988765544 344343 45799999999999753
No 126
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.73 E-value=8.2e-09 Score=108.21 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=77.9
Q ss_pred cCCeEEEEcCCHHHHHHHHH-------HHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC
Q 010917 215 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 287 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~-------l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 287 (497)
.++.++++|++.++++.+.. +.+++.+|+++...+..+. .++..+...+.+.+++.||++++++.++++..+
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~ 237 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE 237 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence 45678899999999998865 5667777777654443332 256677888888899999999999999999864
Q ss_pred CCCcEEEEEeC-CCc--EEEcC-EEEEec-cCcCCCcchhhc
Q 010917 288 SDGRVAAVKLE-DGS--TIDAD-TIVIGI-GAKPTVSPFERV 324 (497)
Q Consensus 288 ~~~~v~~v~~~-~g~--~i~~D-~vv~a~-G~~p~~~~~~~~ 324 (497)
++++.+|... +++ .+.++ .||+|+ |+.+|.++++..
T Consensus 238 -~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~ 278 (557)
T PRK07843 238 -DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAKY 278 (557)
T ss_pred -CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHHh
Confidence 5677776553 443 57785 577755 566776665544
No 127
>PLN02463 lycopene beta cyclase
Probab=98.72 E-value=4.6e-08 Score=99.12 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CC-ccc--------c---CCC------CCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LT-KGY--------L---FPL------DKKP 117 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~-~~~--------l---~~~------~~~~ 117 (497)
....+||+||||||||+++|..|++.|+ +|+|+|+.+...+.+.. .. ..+ + .+. ....
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~ 101 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK 101 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC
Confidence 4456899999999999999999999988 89999997654332110 00 000 0 000 0000
Q ss_pred CCCCC-CccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917 118 ARLPG-FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 118 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~ 184 (497)
..... +...........+.+.+.+.|++++. ++|.+++.... .|++++|.++.+|.||.|+|....
T Consensus 102 ~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 102 KDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 00000 00000000001122233456899874 68888876543 577888888999999999998754
No 128
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.72 E-value=1.6e-07 Score=97.54 Aligned_cols=55 Identities=31% Similarity=0.441 Sum_probs=36.3
Q ss_pred CCCEEecCCCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 010917 330 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 385 (497)
Q Consensus 330 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~~ 385 (497)
-|||.+|.+.+|+.|++||+|+|+.....-.++.. -.+...+...|+.+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999732111111111 12344566677777776643
No 129
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.71 E-value=5.7e-08 Score=99.38 Aligned_cols=97 Identities=16% Similarity=0.350 Sum_probs=73.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||++|+.+|..|++.|. +|+++++.+... +.. ...+ .....+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l------------~~~--~~~~-----------~~~~~~~l 208 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTIL------------PRE--EPSV-----------AALAKQYM 208 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccC------------CCC--CHHH-----------HHHHHHHH
Confidence 4689999999999999999999886 899999976531 000 0000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCCEE-EECCCcEEEeccEEeccCCCCC
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v-~~~~g~~i~~d~lvlAtG~~~~ 184 (497)
++.|+++++++++++++.+...+ ...+++++.+|.+|+|+|..|.
T Consensus 209 ~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 209 EEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 88999999999999998765443 3345678999999999999876
No 130
>PRK06834 hypothetical protein; Provisional
Probab=98.71 E-value=8.3e-08 Score=99.03 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=74.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCC-CCC-------------ccccCCCCCC------
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERP-ALT-------------KGYLFPLDKK------ 116 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~--~~~-~l~-------------~~~l~~~~~~------ 116 (497)
..++|+||||||+|+++|..|+++|+ +|+|+|+.+...+ .|. .++ ..+.......
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence 35799999999999999999999998 8999999864321 110 010 0000000000
Q ss_pred --CCCCCCCcc--ccC-----CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917 117 --PARLPGFHT--CVG-----SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 117 --~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~ 184 (497)
..++..... ..+ ......+.+.+++.|++++.+++++.+..+.. .+++.++.++.+|+||.|.|....
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 000000000 000 00001122334567999999999999876554 456667778999999999998754
No 131
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.71 E-value=2.5e-07 Score=88.90 Aligned_cols=110 Identities=17% Similarity=0.300 Sum_probs=86.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 254 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------ 254 (497)
..|+|||+|+.|+-+|..+++.|.+|++++..+++...
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 46999999999999999999999999999988433211
Q ss_pred -------------------cc-----CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917 255 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310 (497)
Q Consensus 255 -------------------~~-----~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~ 310 (497)
.| ...+.+.+.+++++.||+++++++|.+++..+ ....+.+.+|+++.||.+|+
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence 11 12356778888999999999999999999653 33468889998999999999
Q ss_pred eccC--cCCC-------cchhhcCCcc
Q 010917 311 GIGA--KPTV-------SPFERVGLNS 328 (497)
Q Consensus 311 a~G~--~p~~-------~~~~~~gl~~ 328 (497)
|+|- -|.+ .++++.|+..
T Consensus 162 AtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 162 ATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred ecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 9994 4532 2467777664
No 132
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.70 E-value=1.2e-07 Score=99.71 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=29.4
Q ss_pred cEEEEcCchHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 010917 62 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY 97 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~----~~g~~~~~V~lie~~~~ 97 (497)
||||||||.|||+||.+++ +.|. +|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence 7999999999999999998 5666 8999999764
No 133
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.70 E-value=1.9e-07 Score=94.06 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCC
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 326 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl 326 (497)
...+...+.+.+++.|++++.++.|.+++..+ +.+ .+.+.+| ++.+|.||+|+|...+ .+++.+++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~ 213 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL 213 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence 34677788888899999999999999998643 333 4666666 6999999999998754 45554444
No 134
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=3.3e-07 Score=96.74 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
+.||||||+|.|||+||.++++.|. +|+||||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~ 36 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVP 36 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCC---cEEEEEccC
Confidence 4699999999999999999999987 899999865
No 135
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.68 E-value=5.5e-08 Score=91.32 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=69.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC-------------CC-CC-CCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-------------KP-AR-LPGF 123 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~-------------~~-~~-~~~~ 123 (497)
..+||+||||||||++||+.|++.|+ +|+|+|+.+...... ...+.+++... .+ .. -.+.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~ 98 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGL 98 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCcc
Confidence 45899999999999999999999988 899999986542110 00111111000 00 00 0000
Q ss_pred ccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC-EE---EEC-----------CCcEEEeccEEeccCCCC
Q 010917 124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TL---ITN-----------SGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v---~~~-----------~g~~i~~d~lvlAtG~~~ 183 (497)
...........+.+...+.|++++.+++|..+..++. ++ ... +...+.++.+|+|||...
T Consensus 99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 0000001111223334567999999999988764332 22 111 124689999999999754
No 136
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.67 E-value=4.7e-08 Score=100.79 Aligned_cols=98 Identities=20% Similarity=0.335 Sum_probs=73.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||++|+.+|..|++.|. +|+|+++.+... +.+. ..+ .....+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~-----------~~~-----------~~~~~~~l 221 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL---PGED-----------AEV-----------SKVVAKAL 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC---CCCC-----------HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 899999876421 0000 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCCE--EEECCC--cEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQT--LITNSG--KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~g--~~i~~d~lvlAtG~~~~~ 185 (497)
++.|++++++++|.+++.+... +.+.+| .++.+|.||+|+|..|..
T Consensus 222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence 8889999999999998865543 344456 479999999999998763
No 137
>PRK07190 hypothetical protein; Provisional
Probab=98.66 E-value=8.6e-08 Score=98.78 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC--------------CCCcccc-----------C
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP--------------ALTKGYL-----------F 111 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-~~~~--------------~l~~~~l-----------~ 111 (497)
+..++|+||||||+||++|..|+++|. +|+|||+.+... ..+. .+...+. +
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~ 79 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVW 79 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEe
Confidence 345799999999999999999999998 899999986431 1110 0000000 0
Q ss_pred CCCCCC-------CCCCCC--c--cccCC-CCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEe
Q 010917 112 PLDKKP-------ARLPGF--H--TCVGS-GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV 177 (497)
Q Consensus 112 ~~~~~~-------~~~~~~--~--~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvl 177 (497)
...... ..+.+. . ..... .....+.+.+.+.|++++.+++|+.+..+.. .+.+.+|+++.+++||.
T Consensus 80 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVg 159 (487)
T PRK07190 80 ANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIG 159 (487)
T ss_pred cCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEE
Confidence 000000 000000 0 00000 0000112334567999999999999876543 45667778899999999
Q ss_pred ccCCCC
Q 010917 178 ATGCTA 183 (497)
Q Consensus 178 AtG~~~ 183 (497)
|+|...
T Consensus 160 ADG~~S 165 (487)
T PRK07190 160 ADGSRS 165 (487)
T ss_pred CCCCCH
Confidence 999864
No 138
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.65 E-value=5.5e-07 Score=92.14 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHhCCCc------EEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC-CC--CcEEEE
Q 010917 225 GYIGMEVAAAAVGWKLD------TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAV 295 (497)
Q Consensus 225 G~~g~e~A~~l~~~g~~------Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~--~~v~~v 295 (497)
-.++.|+...+.+.-.+ ..-+.+.. . . -.+.+...+.+.++++||+|+++++|+++..+ ++ +++.++
T Consensus 191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~-y--n-qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI 266 (576)
T PRK13977 191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTK-Y--N-QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAI 266 (576)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccccccCCC-C--C-chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEE
Confidence 35788888888655211 11111111 1 1 23678888999999999999999999998864 22 567777
Q ss_pred EeC-CC--c---EEEcCEEEEeccCc
Q 010917 296 KLE-DG--S---TIDADTIVIGIGAK 315 (497)
Q Consensus 296 ~~~-~g--~---~i~~D~vv~a~G~~ 315 (497)
... +| + ..+.|.||+++|.-
T Consensus 267 ~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 267 HLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred EEEeCCceeEEEecCCCEEEEeCCcC
Confidence 774 23 2 35689999999964
No 139
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.64 E-value=1e-07 Score=96.58 Aligned_cols=124 Identities=17% Similarity=0.203 Sum_probs=72.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CC-CCC-------------cccc-----------C
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RP-ALT-------------KGYL-----------F 111 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---~~-~l~-------------~~~l-----------~ 111 (497)
++||+||||||+|+++|..|+++|. ..+|+|+|+.+..... +. .++ ..+. .
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~-g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAP-HLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCC-CCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence 3799999999999999999999862 2389999997642110 00 000 0000 0
Q ss_pred C-CCCCC-----CCCC-----CCc---cccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccE
Q 010917 112 P-LDKKP-----ARLP-----GFH---TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL 175 (497)
Q Consensus 112 ~-~~~~~-----~~~~-----~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~l 175 (497)
. ..... ..+. +.. ..........+.+.+.+.|++++.+++|+.++.+.. .+++++|..+.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL 159 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence 0 00000 0000 000 000000011122334556999999999999876554 466678888999999
Q ss_pred EeccCCCCC
Q 010917 176 IVATGCTAS 184 (497)
Q Consensus 176 vlAtG~~~~ 184 (497)
|.|+|....
T Consensus 160 I~AdG~~S~ 168 (403)
T PRK07333 160 VAADGARSK 168 (403)
T ss_pred EEcCCCChH
Confidence 999997643
No 140
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.63 E-value=8e-08 Score=89.92 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCC-------------CCCCCC-C-CCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL-------------DKKPAR-L-PGF 123 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~-------------~~~~~~-~-~~~ 123 (497)
..+||+||||||||++||+.|+++|+ +|+|+|+........ ...+.+++. ...+.. . .++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 94 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY 94 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence 36899999999999999999999987 899999987643110 000111000 000000 0 000
Q ss_pred ccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--E---EEEC-----------CCcEEEeccEEeccCCC
Q 010917 124 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T---LITN-----------SGKLLKYGSLIVATGCT 182 (497)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~g~~i~~d~lvlAtG~~ 182 (497)
...........+.+...+.|++++.++.|..+..++. + +.+. +...+.++.+|.|||..
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 0000000111222334567999999999988765433 2 2222 12468999999999964
No 141
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.63 E-value=1.4e-07 Score=100.52 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...||||||||.|||+||..+++.|. +|+|+||.+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~ 38 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVP 38 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCC
Confidence 45799999999999999999999987 899999865
No 142
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.62 E-value=8e-08 Score=72.98 Aligned_cols=78 Identities=18% Similarity=0.366 Sum_probs=58.8
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 141 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (497)
+|+|||||+.|+.+|..|++.|. +|+|+++.+.+. +.+.. .. .....+++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~---~~~~~-----------~~-----------~~~~~~~l~~ 52 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL---PGFDP-----------DA-----------AKILEEYLRK 52 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS---TTSSH-----------HH-----------HHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh---hhcCH-----------HH-----------HHHHHHHHHH
Confidence 68999999999999999999987 899999987642 11100 00 1234677889
Q ss_pred cCcEEEeCCcEEEEecCCCE--EEECCC
Q 010917 142 KGIEMIYQDPVTSIDIEKQT--LITNSG 167 (497)
Q Consensus 142 ~~v~~~~~~~v~~i~~~~~~--v~~~~g 167 (497)
.||++++++.+..++.+... |+++||
T Consensus 53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 99999999999999876643 565554
No 143
>PRK06184 hypothetical protein; Provisional
Probab=98.61 E-value=1.5e-07 Score=98.10 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=71.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CC--------------CCCCcccc-----------CCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PALTKGYL-----------FPL 113 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~-~~--------------~~l~~~~l-----------~~~ 113 (497)
+.+|+||||||+||++|..|+++|+ +|+|||+.+...- .+ -.+...+. +..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 79 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRD 79 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeC
Confidence 5799999999999999999999998 8999999864310 00 00000000 000
Q ss_pred CCCC--CCCC-------C--Ccc---ccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEE---CCCcEEEecc
Q 010917 114 DKKP--ARLP-------G--FHT---CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGS 174 (497)
Q Consensus 114 ~~~~--~~~~-------~--~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~---~~g~~i~~d~ 174 (497)
.... ..+. . +.. +........+.+.+.+.|++++.++++++++.+.. ++++ ++++++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~ 159 (502)
T PRK06184 80 DGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARY 159 (502)
T ss_pred CceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCE
Confidence 0000 0000 0 000 00000001122334556899999999999876544 3444 5567899999
Q ss_pred EEeccCCCC
Q 010917 175 LIVATGCTA 183 (497)
Q Consensus 175 lvlAtG~~~ 183 (497)
||.|+|...
T Consensus 160 vVgADG~~S 168 (502)
T PRK06184 160 LVGADGGRS 168 (502)
T ss_pred EEECCCCch
Confidence 999999864
No 144
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.60 E-value=2.9e-07 Score=97.16 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=67.8
Q ss_pred cCCeEEEEcCCHHH-HHHHHHHHhCCCcEEEEecCCcchhh-------------ccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917 215 KAKKVVVVGGGYIG-MEVAAAAVGWKLDTTIIFPENHLLQR-------------LFTPSLAQRYEQLYQQNGVKFVKGAS 280 (497)
Q Consensus 215 ~~~~vvVvG~G~~g-~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------~~~~~~~~~~~~~l~~~GV~i~~~~~ 280 (497)
...++.++|++.++ .+++..+...+..+.+..+..+++.. ..+..+...+.+.+++.|++++.++.
T Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~ 239 (581)
T PRK06134 160 PLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAP 239 (581)
T ss_pred ccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCE
Confidence 44567778877665 67777776666555443322221111 12345667788888999999999999
Q ss_pred EEEEEeCCCCcEEEEEeC--CCc-EEEc-CEEEEeccCcCC
Q 010917 281 IKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT 317 (497)
Q Consensus 281 v~~i~~~~~~~v~~v~~~--~g~-~i~~-D~vv~a~G~~p~ 317 (497)
++++..+ ++++.+|... ++. ++.+ +.||+|+|.-.+
T Consensus 240 v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 240 ARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 9998754 5677666543 333 5788 999999987654
No 145
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.59 E-value=1.2e-07 Score=95.53 Aligned_cols=124 Identities=19% Similarity=0.330 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--C-----CCCc---ccc-----CCCCC--CCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--P-----ALTK---GYL-----FPLDK--KPARL 120 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~--~-----~l~~---~~l-----~~~~~--~~~~~ 120 (497)
..++||+||||||+|+++|..|+++|+ +|+|||+.+...+.. + .+.. ..+ ..... ....+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~---~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGL---SVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY 80 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC---EEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence 345899999999999999999999998 899999976432210 0 0000 000 00000 00000
Q ss_pred CCC----------ccc----cCCC----------CCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEecc
Q 010917 121 PGF----------HTC----VGSG----------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS 174 (497)
Q Consensus 121 ~~~----------~~~----~~~~----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~ 174 (497)
... ..+ .+.. +...+.+.+++.|++++.+++|+++..+.. ++++++|.++.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~ 160 (392)
T PRK08773 81 RRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAAL 160 (392)
T ss_pred cEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCE
Confidence 000 000 0000 000112224456999999999998876544 46667788899999
Q ss_pred EEeccCCCCC
Q 010917 175 LIVATGCTAS 184 (497)
Q Consensus 175 lvlAtG~~~~ 184 (497)
||.|+|....
T Consensus 161 vV~AdG~~S~ 170 (392)
T PRK08773 161 AIAADGAAST 170 (392)
T ss_pred EEEecCCCch
Confidence 9999998753
No 146
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.56 E-value=1.9e-07 Score=94.09 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=68.9
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCCccccC--C-CCCCCCCCCC--------Ccc----
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYLF--P-LDKKPARLPG--------FHT---- 125 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~l~~~~l~--~-~~~~~~~~~~--------~~~---- 125 (497)
||+||||||||+++|..|++.|+ +|+|||+.+..+.... .+....+. . .......+.+ ...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 69999999999999999999988 8999999865432210 00000000 0 0000000000 000
Q ss_pred ----ccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecC-C--CEEEECCCcEEEeccEEeccCCCC
Q 010917 126 ----CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 126 ----~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~--~~v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
.....+...+.+.+.+.|++++ ..+|..+... . ..+++++|.++.+|.||.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0000001112233355688886 4578877655 2 356777887899999999999875
No 147
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.56 E-value=7.3e-07 Score=77.23 Aligned_cols=118 Identities=15% Similarity=0.283 Sum_probs=65.2
Q ss_pred EEEcCchHHHHHHHHHHHcC--CCCCcEEEEcCCCCC---CCCCCCCCccccCCCC----CCCCCC-CCCccccCCCC--
Q 010917 64 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAYA---PYERPALTKGYLFPLD----KKPARL-PGFHTCVGSGG-- 131 (497)
Q Consensus 64 vIIGgG~AGl~aA~~L~~~g--~~~~~V~lie~~~~~---~~~~~~l~~~~l~~~~----~~~~~~-~~~~~~~~~~~-- 131 (497)
+|||||++|++++.+|.+.. ....+|+|||+.+.. +|.........+.... ..+.+. +.|..|.....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 59999999999999999984 346799999996542 2332111100110000 000000 11111111110
Q ss_pred --------CC--------CCHhHH----HH--cCcEEE-eCCcEEEEecCCC--EEEECCCcEEEeccEEeccCC
Q 010917 132 --------ER--------QTPEWY----KE--KGIEMI-YQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC 181 (497)
Q Consensus 132 --------~~--------~~~~~~----~~--~~v~~~-~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~ 181 (497)
.. ++.+.+ +. .++++. ...+|+.++.... .+.+++|..+.+|+||||||.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 00 111111 11 244432 2358888887544 678899999999999999994
No 148
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.54 E-value=1.9e-06 Score=82.42 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---------------CcEEEcCEEEEeccCcCC
Q 010917 260 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---------------g~~i~~D~vv~a~G~~p~ 317 (497)
+..++-+..++.||+++++....++--+++|.|.+|.++| |-++.+..-|+|-|-+..
T Consensus 185 ~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~ 257 (621)
T KOG2415|consen 185 LVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS 257 (621)
T ss_pred HHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence 4456666678999999999998888888889888887754 235778888999888764
No 149
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.54 E-value=3.3e-07 Score=92.43 Aligned_cols=124 Identities=17% Similarity=0.270 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC--------CC-------cccc-CCCC----CCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--------LT-------KGYL-FPLD----KKP 117 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~--------l~-------~~~l-~~~~----~~~ 117 (497)
...+||+||||||+|+++|..|++.|+ +|+|+|+.+...+.... ++ +.+- .... ..+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP 79 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence 345899999999999999999999998 89999997532221000 00 0000 0000 000
Q ss_pred -CC-----CCC-Cccc-----cCCC--C-CC--CC----HhHHHHc-CcEEEeCCcEEEEecCCC--EEEECCCcEEEec
Q 010917 118 -AR-----LPG-FHTC-----VGSG--G-ER--QT----PEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 173 (497)
Q Consensus 118 -~~-----~~~-~~~~-----~~~~--~-~~--~~----~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d 173 (497)
.. ... .... .... + .. .+ .+.+.+. +++++.+++++.+..+.. .+.++++.++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~ 159 (391)
T PRK08020 80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK 159 (391)
T ss_pred cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence 00 000 0000 0000 0 00 01 1122334 899998999998865443 4666788889999
Q ss_pred cEEeccCCCCC
Q 010917 174 SLIVATGCTAS 184 (497)
Q Consensus 174 ~lvlAtG~~~~ 184 (497)
.||.|.|....
T Consensus 160 ~vI~AdG~~S~ 170 (391)
T PRK08020 160 LVIGADGANSQ 170 (391)
T ss_pred EEEEeCCCCch
Confidence 99999998653
No 150
>PRK07236 hypothetical protein; Provisional
Probab=98.53 E-value=6e-07 Score=90.32 Aligned_cols=123 Identities=13% Similarity=0.070 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--CCcc---ccC--CCC-CCCCCCC--CC--c
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YLF--PLD-KKPARLP--GF--H 124 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-~--l~~~---~l~--~~~-~~~~~~~--~~--~ 124 (497)
++..+|+|||||++|+++|..|++.|+ +|+|+|+.+...-.+. . +... .+. +.. ......+ .. .
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 80 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL 80 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence 445899999999999999999999998 8999999864311110 0 0000 000 000 0000000 00 0
Q ss_pred cccCC-----CC------CCCCHhHHH-H-cCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917 125 TCVGS-----GG------ERQTPEWYK-E-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 125 ~~~~~-----~~------~~~~~~~~~-~-~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
...+. .. ...+...+. . .+++++.+++|+.+..+.. ++++++|+++.+|.||.|-|...
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 00000 00 000111121 1 2467899999999976554 46778898999999999999754
No 151
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.52 E-value=8.7e-08 Score=99.89 Aligned_cols=56 Identities=29% Similarity=0.421 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
..+.+.+.+.+++.|+++++++.|.+|... ++++..|.+.+|+++.+|.||++++.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcH
Confidence 467788888899999999999999999864 56666888999999999999999875
No 152
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.52 E-value=6.9e-06 Score=76.95 Aligned_cols=166 Identities=18% Similarity=0.211 Sum_probs=102.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------ccCH
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP 258 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------~~~~ 258 (497)
.-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+... ....
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 457999999999999999999999999999987543100 0112
Q ss_pred HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC-cEEEEEeCC-----------CcEEEcCEEEEeccCcCCC-cch-hhc
Q 010917 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTIVIGIGAKPTV-SPF-ERV 324 (497)
Q Consensus 259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~-~v~~v~~~~-----------g~~i~~D~vv~a~G~~p~~-~~~-~~~ 324 (497)
++.+.+.+...+.|++++.++.+.++...+++ ++.++.... ..++.++.||.|+|..... .++ +..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 34455666677899999999999998765442 566766532 2479999999999976432 222 222
Q ss_pred CCcccC------CCEEecC-------CCCCCCCcEEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917 325 GLNSSV------GGIQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 325 gl~~~~------g~i~vd~-------~~~t~~~~iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~ 384 (497)
++.... +....+. +-+--+|++|++|=.+.-.... .++.+ ....=...|+.+|+.++
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~-~rmgp--~fg~m~~sg~~~a~~~~ 250 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGL-PRMGP--IFGGMLLSGKHVAEQIL 250 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCC-CCcCc--hHHHHHHhhHHHHHHHH
Confidence 222110 0111110 1111479999999776522110 11111 12212345777777665
No 153
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.51 E-value=4.4e-07 Score=92.59 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=75.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||++|+.+|..|++.|. +|+++++.+.... +.+. ..+ .....+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~~--~~~~-----------~~~-----------~~~~~~~l 189 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERILN--KLFD-----------EEM-----------NQIVEEEL 189 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccCc--cccC-----------HHH-----------HHHHHHHH
Confidence 4799999999999999999999886 8999998764210 0000 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~ 184 (497)
++.||+++.++++.+++.+...+.+.+|+++.+|.||+|+|..|.
T Consensus 190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 888999999999999987666556678888999999999998876
No 154
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.51 E-value=4.6e-06 Score=78.35 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=76.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------ccCH
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP 258 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------~~~~ 258 (497)
...|+|||+|+.|+-+|..|++.|.+|.++++.+.+... ....
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999987543210 0012
Q ss_pred HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeccCcCC
Q 010917 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vv~a~G~~p~ 317 (497)
.+...+.+...+.|++++.++.+.++...+++++.++... +..++.++.||.|+|....
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 3445566667889999999999999876544466665542 2247999999999997543
No 155
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.51 E-value=1.3e-06 Score=90.69 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=33.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...++||||||||.|||.||..+++.|. +|+|+||.+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~ 39 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAP 39 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEccc
Confidence 3456899999999999999999999997 899999986
No 156
>PRK09126 hypothetical protein; Provisional
Probab=98.51 E-value=7.7e-07 Score=89.76 Aligned_cols=122 Identities=23% Similarity=0.339 Sum_probs=71.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-------CCc---------cc---cCCCCCCCC--
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-------LTK---------GY---LFPLDKKPA-- 118 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-------l~~---------~~---l~~~~~~~~-- 118 (497)
+++|+||||||+|+++|..|+++|+ +|+|+|+.+......+. +.. +. +......+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~ 79 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRD 79 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccce
Confidence 5899999999999999999999998 89999998652110000 000 00 000000000
Q ss_pred ------CCCCCccccC----CCCC------CCCH----hHH-HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccE
Q 010917 119 ------RLPGFHTCVG----SGGE------RQTP----EWY-KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL 175 (497)
Q Consensus 119 ------~~~~~~~~~~----~~~~------~~~~----~~~-~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~l 175 (497)
.......... .... ..+. +.+ +..|++++.+++|+.++.... .+.+++|+++.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~v 159 (392)
T PRK09126 80 AKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLL 159 (392)
T ss_pred EEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEE
Confidence 0000000000 0000 0011 111 235899999999998875543 566778888999999
Q ss_pred EeccCCCCC
Q 010917 176 IVATGCTAS 184 (497)
Q Consensus 176 vlAtG~~~~ 184 (497)
|.|.|....
T Consensus 160 I~AdG~~S~ 168 (392)
T PRK09126 160 VAADSRFSA 168 (392)
T ss_pred EEeCCCCch
Confidence 999997643
No 157
>PRK08244 hypothetical protein; Provisional
Probab=98.50 E-value=4.4e-07 Score=94.34 Aligned_cols=121 Identities=17% Similarity=0.305 Sum_probs=70.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCC--------------CCCCccccC----------CCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER--------------PALTKGYLF----------PLD 114 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~-~~~--------------~~l~~~~l~----------~~~ 114 (497)
+++|+||||||+|+++|..|++.|+ +|+|||+.+... ..+ -.+...+.. ...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 4799999999999999999999998 899999986431 110 000000000 000
Q ss_pred CCCCCCCCCcc-------ccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCE--EEEC--CC-cEEEeccEEeccCCC
Q 010917 115 KKPARLPGFHT-------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITN--SG-KLLKYGSLIVATGCT 182 (497)
Q Consensus 115 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~--~g-~~i~~d~lvlAtG~~ 182 (497)
....++..... +........+.+.+++.|++++.+++++++..+... +++. +| .++++|+||.|.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 00000000000 000000011122345569999999999998765543 3333 45 479999999999986
Q ss_pred C
Q 010917 183 A 183 (497)
Q Consensus 183 ~ 183 (497)
.
T Consensus 159 S 159 (493)
T PRK08244 159 S 159 (493)
T ss_pred h
Confidence 5
No 158
>PLN02697 lycopene epsilon cyclase
Probab=98.50 E-value=3.1e-07 Score=94.64 Aligned_cols=119 Identities=14% Similarity=0.197 Sum_probs=68.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CCcccc--CCC-CCCCCCCCCC--------ccc
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPL-DKKPARLPGF--------HTC 126 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~l--~~~-~~~~~~~~~~--------~~~ 126 (497)
..+||+||||||||+++|..|++.|+ +|+|||+... +..+. .+...+ .+. ......+++. ...
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~p--~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~ 181 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDLP--FTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM 181 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEecCccc--CCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence 45899999999999999999999998 8999998532 21110 000000 000 0000000000 000
Q ss_pred cCCCCC--------CCCHhHHHHcCcEEEeCCcEEEEecCCC--E-EEECCCcEEEeccEEeccCCCC
Q 010917 127 VGSGGE--------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 127 ~~~~~~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~-v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
.+..+. ..+.+.+.+.|+++ .+++|+.+..+.. . +++.+|.++.++.||.|+|...
T Consensus 182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 182 IGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000000 11222234568998 4678988875433 2 4557788899999999999876
No 159
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.50 E-value=1.4e-06 Score=93.84 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
..+...+.+.+++ |++++.++.|++++.. ++.+ .|.+.+|..+.+|.||+|+|....
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 4566777777777 9999999999999864 3444 377788877899999999998654
No 160
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.49 E-value=1.7e-07 Score=95.66 Aligned_cols=58 Identities=31% Similarity=0.579 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
.+.+.+.+...+.||+++.++ |+++...+++.+..|++++|+++.+|.+|-|+|++..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 566678888889999999885 7777777788898999999999999999999999753
No 161
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.49 E-value=1.4e-06 Score=89.52 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeccC
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA 314 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~~D~vv~a~G~ 314 (497)
..+.+.+.+.+++.|++|++++.|++|...+++++.++.+.+++ ++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45667778888889999999999999986556777778886665 7999999999864
No 162
>PRK07045 putative monooxygenase; Reviewed
Probab=98.49 E-value=4e-07 Score=91.71 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CC-CCCc---ccc----------------------
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RP-ALTK---GYL---------------------- 110 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~~-~l~~---~~l---------------------- 110 (497)
+.+++|+||||||||+++|..|+++|+ +|+|+|+.+..... +. .+.. ..+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 79 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGH---SVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRL 79 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCC---cEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEE
Confidence 345799999999999999999999998 89999998754210 00 0000 000
Q ss_pred CCCCCCCCCCCCCccccCCCCC-----CCCHhHH----H-HcCcEEEeCCcEEEEecCC-C---EEEECCCcEEEeccEE
Q 010917 111 FPLDKKPARLPGFHTCVGSGGE-----RQTPEWY----K-EKGIEMIYQDPVTSIDIEK-Q---TLITNSGKLLKYGSLI 176 (497)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~-~~~v~~~~~~~v~~i~~~~-~---~v~~~~g~~i~~d~lv 176 (497)
.........+. +.......+. ..+.+.+ . ..+++++++++++.+.... . .+++++|+++.+|.||
T Consensus 80 ~~~g~~~~~~~-~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vI 158 (388)
T PRK07045 80 YHDKELIASLD-YRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLV 158 (388)
T ss_pred ecCCcEEEEec-CCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEE
Confidence 00000000000 0000000000 0011111 2 2478999999999887543 2 4777888899999999
Q ss_pred eccCCCC
Q 010917 177 VATGCTA 183 (497)
Q Consensus 177 lAtG~~~ 183 (497)
-|.|...
T Consensus 159 gADG~~S 165 (388)
T PRK07045 159 GADGARS 165 (388)
T ss_pred ECCCCCh
Confidence 9999764
No 163
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.48 E-value=3.9e-06 Score=84.29 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCC
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 326 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl 326 (497)
..+...+.+.+++.|++++.+++|.+++.. ++.+ .+.+.++ ++.+|.||+|+|.... .++..+++
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g~ 209 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLGI 209 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhccc
Confidence 355667777788899999999999999864 3333 4666665 6999999999997543 44444443
No 164
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.47 E-value=9.9e-07 Score=88.19 Aligned_cols=98 Identities=20% Similarity=0.352 Sum_probs=66.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------- 254 (497)
+|+|||||+.|+-+|..+++.|.+|.|+++.+++..+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999998433211
Q ss_pred -----------------------c-cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917 255 -----------------------L-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310 (497)
Q Consensus 255 -----------------------~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~ 310 (497)
. -..++.+.+.+.+++.||+++++++|.+++.. ++.+..|.++++.++.+|.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence 0 01235567788889999999999999999865 4444567887888999999999
Q ss_pred eccCcC
Q 010917 311 GIGAKP 316 (497)
Q Consensus 311 a~G~~p 316 (497)
|+|-..
T Consensus 161 AtGG~S 166 (409)
T PF03486_consen 161 ATGGKS 166 (409)
T ss_dssp ----SS
T ss_pred ecCCCC
Confidence 999754
No 165
>PLN02612 phytoene desaturase
Probab=98.46 E-value=3.5e-06 Score=88.55 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
..+.+.+.+.+++.|.+|++++.|++|+.++++.+..+.+.+|+++.+|.||++++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 456677888888899999999999999876677777788889999999999999763
No 166
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.46 E-value=4.6e-07 Score=91.25 Aligned_cols=120 Identities=21% Similarity=0.315 Sum_probs=70.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-------CCCc---cccCCC---CC------CC---
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-------ALTK---GYLFPL---DK------KP--- 117 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-------~l~~---~~l~~~---~~------~~--- 117 (497)
++||+||||||||+++|..|++.|+ +|+|+|+.+....... .++. ..+... .. .+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 81 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD 81 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceE
Confidence 5799999999999999999999988 8999999865321000 0000 000000 00 00
Q ss_pred --------CC---------CCCCcc-ccCCCCCCCCHhHHHHcC-cEEEeCCcEEEEecCCC--EEEECCCcEEEeccEE
Q 010917 118 --------AR---------LPGFHT-CVGSGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 176 (497)
Q Consensus 118 --------~~---------~~~~~~-~~~~~~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lv 176 (497)
.. .+.... .........+.+.+.+.+ ++++ +++++++..... .+++.+|.++.+|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI 160 (388)
T PRK07608 82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVV 160 (388)
T ss_pred EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEE
Confidence 00 000000 000000011223344556 8888 888888865433 5677788789999999
Q ss_pred eccCCCC
Q 010917 177 VATGCTA 183 (497)
Q Consensus 177 lAtG~~~ 183 (497)
.|+|...
T Consensus 161 ~adG~~S 167 (388)
T PRK07608 161 GADGAHS 167 (388)
T ss_pred EeCCCCc
Confidence 9999864
No 167
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.46 E-value=4.5e-07 Score=92.19 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=34.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
+.++||+||||||||+++|..|++.|+ +|+|+|+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence 346899999999999999999999998 89999998753
No 168
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.46 E-value=8.3e-07 Score=88.63 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
++|+|||||+|||+||+.|++++. +.+|+|+|+++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p-~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGP-DVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCC-CCcEEEEecCCCC
Confidence 379999999999999999999995 6799999998754
No 169
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.45 E-value=7.8e-07 Score=89.14 Aligned_cols=99 Identities=16% Similarity=0.339 Sum_probs=76.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
..++|+|||||+.|+.+|..|++.|. +|+++++.+...- ..+ +... ...+.+.
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l~-------~~~------~~~~-----------~~~l~~~ 192 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLLA-------SLM------PPEV-----------SSRLQHR 192 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCcccc-------hhC------CHHH-----------HHHHHHH
Confidence 35789999999999999999999887 8999998765310 000 0000 1234566
Q ss_pred HHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917 139 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 139 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~ 184 (497)
+++.|++++.++++.+++.+.. .+.+.+|+++.+|.+|+|+|..|.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 7889999999999999987543 467788889999999999998875
No 170
>PRK08013 oxidoreductase; Provisional
Probab=98.45 E-value=4e-07 Score=91.98 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------C-----C---------CCCccccCCCCCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------R-----P---------ALTKGYLFPLDKKPA 118 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-------~-----~---------~l~~~~l~~~~~~~~ 118 (497)
.+||+||||||+|+++|..|++.|+ +|+|+|+.+...-. + | .+.............
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~ 79 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH 79 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence 4799999999999999999999998 89999998652210 0 0 000000000000000
Q ss_pred CC-----C--CCccc----cCCCC----CC--CCHh----HHHHc-CcEEEeCCcEEEEecCC--CEEEECCCcEEEecc
Q 010917 119 RL-----P--GFHTC----VGSGG----ER--QTPE----WYKEK-GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGS 174 (497)
Q Consensus 119 ~~-----~--~~~~~----~~~~~----~~--~~~~----~~~~~-~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~ 174 (497)
.+ . +.... .+... .. .+.. .+.+. +++++.+++++.++.+. .++++.+|+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 159 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL 159 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence 00 0 00000 00000 00 0111 12332 79999999999886544 356777888999999
Q ss_pred EEeccCCCC
Q 010917 175 LIVATGCTA 183 (497)
Q Consensus 175 lvlAtG~~~ 183 (497)
||-|.|...
T Consensus 160 vVgADG~~S 168 (400)
T PRK08013 160 VVGADGANS 168 (400)
T ss_pred EEEeCCCCc
Confidence 999999764
No 171
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.45 E-value=1.4e-06 Score=87.78 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=34.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
++..+||+||||||+|+++|..|+++|+ +|+|||+.+.
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~ 41 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPP 41 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCC
Confidence 4556799999999999999999999998 8999999864
No 172
>PRK07233 hypothetical protein; Provisional
Probab=98.45 E-value=6e-07 Score=91.83 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
..+.+.+.+.+++.|++++++++|++|+.. ++.+..+. .+++++++|.||+|++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCH
Confidence 456777888888999999999999999865 34443343 56778999999999875
No 173
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.45 E-value=2.4e-06 Score=86.66 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEeccCcC
Q 010917 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKP 316 (497)
Q Consensus 259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-----g~~i~~D~vv~a~G~~p 316 (497)
.+...+.+.+++.|++++.++.|++++.. ++.+ .+.+.+ +.++.+|.||+|+|...
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 45566778889999999999999999864 3333 233322 23799999999999764
No 174
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.45 E-value=1.3e-06 Score=88.01 Aligned_cols=99 Identities=26% Similarity=0.377 Sum_probs=73.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchh-h-ccCHHHH---------HHHHHHHHHCCcEEEcCCeEE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ-R-LFTPSLA---------QRYEQLYQQNGVKFVKGASIK 282 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~-~-~~~~~~~---------~~~~~~l~~~GV~i~~~~~v~ 282 (497)
.++|+|||+|+.|+.+|..|++.+. +|+++++.+.+.. + .+...+. ..-.+.+.+.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999876 6899987654211 0 1111110 001244677899999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917 283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 318 (497)
Q Consensus 283 ~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~ 318 (497)
.++.. .+ .+.+.+|+++.+|.+|+|||.+|..
T Consensus 83 ~id~~--~~--~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRD--TR--ELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECC--CC--EEEECCCCEEEcCEEEEccCCCCCC
Confidence 99753 22 4667888899999999999999853
No 175
>PRK05868 hypothetical protein; Validated
Probab=98.45 E-value=6.8e-07 Score=89.28 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---------------CCCCCccc-----------cC-C
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------------RPALTKGY-----------LF-P 112 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~---------------~~~l~~~~-----------l~-~ 112 (497)
+++|+|||||++|+++|..|+++|+ +|+|+|+.+...-. +..+...+ +. .
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 77 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR 77 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence 3699999999999999999999998 89999998643210 00000000 00 0
Q ss_pred CCCCCCCCCC---CccccCCCCCC----CCHhHHH---HcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccC
Q 010917 113 LDKKPARLPG---FHTCVGSGGER----QTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG 180 (497)
Q Consensus 113 ~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~---~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG 180 (497)
.......... ........... .+.+.+. ..+++++++++|+.++.+.. ++++++|.++.+|.||-|-|
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 0000000000 00000000000 1112222 25799999999999875443 56778888999999999999
Q ss_pred CCC
Q 010917 181 CTA 183 (497)
Q Consensus 181 ~~~ 183 (497)
...
T Consensus 158 ~~S 160 (372)
T PRK05868 158 LHS 160 (372)
T ss_pred CCc
Confidence 754
No 176
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.45 E-value=1.7e-06 Score=78.54 Aligned_cols=97 Identities=21% Similarity=0.351 Sum_probs=67.5
Q ss_pred EEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhh------------------------------------------cc
Q 010917 220 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR------------------------------------------LF 256 (497)
Q Consensus 220 vVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~------------------------------------------~~ 256 (497)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+... ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 9999987332110 00
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC--cCCC
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTV 318 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~--~p~~ 318 (497)
.+++.+++++..++.++++.++++|++++..+++ -.|++.+++++.||.||+|+|. .|+.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB--
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCc
Confidence 1235577888889999999999999999987655 4688889888999999999997 5543
No 177
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.45 E-value=6.8e-07 Score=91.89 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++++|||||++|+.+|..|++.|. +|+|+++.+.... . . ..++ ...+.+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll~-----------~-~--d~e~-----------~~~l~~~L 221 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLLP-----------G-E--DEDI-----------AHILREKL 221 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcCc-----------c-c--cHHH-----------HHHHHHHH
Confidence 4799999999999999999999886 8999998764210 0 0 0001 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCCEEEEC-CC--cEEEeccEEeccCCCCC
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTAS 184 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v~~~-~g--~~i~~d~lvlAtG~~~~ 184 (497)
++.||++++++++..++.+...+.+. ++ .++.+|.|++|+|..|.
T Consensus 222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 88899999999999998766554442 33 36899999999998876
No 178
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.44 E-value=8.5e-07 Score=93.11 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
...+||+||||||+|+++|..|++.|+ +|+|+|+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 456899999999999999999999998 8999999864
No 179
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.44 E-value=5.5e-06 Score=83.98 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
.+...+.+.+++.|++++.+++|++++..+++.+..+.+.+| ++.++.||+|+|..
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 455556777889999999999999997544456666777777 59999988887754
No 180
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.44 E-value=6.8e-06 Score=83.57 Aligned_cols=63 Identities=29% Similarity=0.466 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhc
Q 010917 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 324 (497)
Q Consensus 259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~ 324 (497)
.+...+.+.+++.|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|.... .++...
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~ 264 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPL 264 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHh
Confidence 55667777888999999999999999864 444545666654 6999999999997643 344443
No 181
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.44 E-value=2.8e-07 Score=95.14 Aligned_cols=57 Identities=23% Similarity=0.411 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
...+.+.+.+.++++|++|+++++|++|... +++.+.+...+|+.+++|.||.....
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence 3467888999999999999999999999864 55556778888878999999998776
No 182
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.44 E-value=4.6e-07 Score=91.54 Aligned_cols=123 Identities=19% Similarity=0.243 Sum_probs=71.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------C---------CCCccc-----------cCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------P---------ALTKGY-----------LFP 112 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~---------~l~~~~-----------l~~ 112 (497)
++.+|+|||||++|+++|..|++.|+ +|+|+|+.+...-.. | .+.... +..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD 79 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence 35799999999999999999999998 899999986432100 0 000000 000
Q ss_pred --CCCCCCCCC--C-CccccCCCC--------CCCCHhHHHHc-CcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEE
Q 010917 113 --LDKKPARLP--G-FHTCVGSGG--------ERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 176 (497)
Q Consensus 113 --~~~~~~~~~--~-~~~~~~~~~--------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lv 176 (497)
.......++ . +....+... ...+.+.+.+. +++++.+++++.++.+.. .+++.+|+++.+|.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV 159 (396)
T PRK08163 80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALI 159 (396)
T ss_pred CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEE
Confidence 000000000 0 000000000 00111122233 489999999999876543 5666788889999999
Q ss_pred eccCCCCC
Q 010917 177 VATGCTAS 184 (497)
Q Consensus 177 lAtG~~~~ 184 (497)
.|.|....
T Consensus 160 ~AdG~~S~ 167 (396)
T PRK08163 160 GCDGVKSV 167 (396)
T ss_pred ECCCcChH
Confidence 99998643
No 183
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.43 E-value=4.8e-07 Score=91.69 Aligned_cols=121 Identities=17% Similarity=0.279 Sum_probs=71.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--C------CC-C-CCCCc---ccc-----CCCC----CCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--P------YE-R-PALTK---GYL-----FPLD----KKP 117 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~--~------~~-~-~~l~~---~~l-----~~~~----~~~ 117 (497)
.+||+||||||+|+++|..|+++|+ +|+|+|+.+.. + +. + ..++. ..+ .+.- ..+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL---EVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP 78 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC---EEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence 4699999999999999999999998 89999997621 0 00 0 00000 000 0000 000
Q ss_pred -CC-----CCCC--cccc----CCCC----------CCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEec
Q 010917 118 -AR-----LPGF--HTCV----GSGG----------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 173 (497)
Q Consensus 118 -~~-----~~~~--~~~~----~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d 173 (497)
.. -.+. ..+. .... ...+.+.+.+.+++++.++++.+++.... .+++.+|+++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 00 0000 0000 0000 00111223446899999999998875543 5677888889999
Q ss_pred cEEeccCCCC
Q 010917 174 SLIVATGCTA 183 (497)
Q Consensus 174 ~lvlAtG~~~ 183 (497)
.||.|.|...
T Consensus 159 ~vVgAdG~~S 168 (405)
T PRK05714 159 LVVAADGANS 168 (405)
T ss_pred EEEEecCCCc
Confidence 9999999764
No 184
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.43 E-value=6.1e-07 Score=81.21 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=31.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
.+|+|||+|+||++||..|++.|. +|||+||+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCC
Confidence 479999999999999999999998 899999986
No 185
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.43 E-value=8.9e-06 Score=83.98 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEeccC-cCCCcchh
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGA-KPTVSPFE 322 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vv~a~G~-~p~~~~~~ 322 (497)
..+...+.+.+++.|++++.+++++++... ++++..+... ++ ..+.++.||+|+|- ..|.++++
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 456677778889999999999999999864 5777777653 33 36889999999984 34434443
No 186
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.41 E-value=6.3e-06 Score=80.33 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=67.2
Q ss_pred HHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 235 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 235 l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
....|....++....+.+....-+.+.+-+.+.+++.|++++++++|.+++.. ++.+..+.+++|.++++|.||+|+|.
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCc
Confidence 34445555544333332222345677888899999999999999999999864 55567899999999999999999999
Q ss_pred cCCCcch----hhcCCccc
Q 010917 315 KPTVSPF----ERVGLNSS 329 (497)
Q Consensus 315 ~p~~~~~----~~~gl~~~ 329 (497)
... +++ +.+|+...
T Consensus 229 sg~-dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 229 SGR-DWFEMLHKKLGVKMR 246 (486)
T ss_pred chH-HHHHHHHHhcCcccc
Confidence 876 443 34455443
No 187
>PRK06126 hypothetical protein; Provisional
Probab=98.41 E-value=1.1e-06 Score=92.66 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
....++|+||||||+|+++|..|+++|+ +|+|+|+.+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence 3446899999999999999999999998 8999999864
No 188
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.40 E-value=8.1e-07 Score=89.29 Aligned_cols=122 Identities=12% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCCcc---c-----cCCCC----CCCC-
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTKG---Y-----LFPLD----KKPA- 118 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~--------~l~~~---~-----l~~~~----~~~~- 118 (497)
.+||+||||||+|+++|..|++.|+ +|+|+|+.+...+... .++.. . +...- ..+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 4799999999999999999999998 8999998752222110 11100 0 00000 0000
Q ss_pred ------CCCCCcccc-----CCC--C-C-C-CCHhH----HHH-cCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccE
Q 010917 119 ------RLPGFHTCV-----GSG--G-E-R-QTPEW----YKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSL 175 (497)
Q Consensus 119 ------~~~~~~~~~-----~~~--~-~-~-~~~~~----~~~-~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~l 175 (497)
.......+. ... + . + .+... +.. .+++++.++++++++.+. .++++++|.++.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 000000000 000 0 0 0 01111 122 369999999999887544 3678889999999999
Q ss_pred EeccCCCCC
Q 010917 176 IVATGCTAS 184 (497)
Q Consensus 176 vlAtG~~~~ 184 (497)
|.|.|....
T Consensus 160 IgADG~~S~ 168 (384)
T PRK08849 160 IGADGANSQ 168 (384)
T ss_pred EEecCCCch
Confidence 999998643
No 189
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.40 E-value=8.3e-07 Score=91.49 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=74.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+.+|..|++.|. +|+++++.+... |.+ . ..+ .....+.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~---~~~-----------~~~l~~~l 223 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL---PGE--------D---KEI-----------SKLAERAL 223 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC---CcC--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 899999876531 000 0 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCCE--EEECCC---cEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQT--LITNSG---KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~g---~~i~~d~lvlAtG~~~~~ 185 (497)
++.|++++++++|.+++.+... +.+.++ +++.+|.||+|+|..|..
T Consensus 224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 8899999999999999876543 444455 679999999999998763
No 190
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.40 E-value=5.2e-07 Score=93.23 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=32.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
.++||+|||||+||++||..+++.|. +|+|+|+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence 35899999999999999999999998 899999874
No 191
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.40 E-value=1e-06 Score=89.61 Aligned_cols=54 Identities=22% Similarity=0.264 Sum_probs=37.7
Q ss_pred cCCCEEecCCCCCCCCcEEEeccccc-cCCccCCcccccccHHHHHHHHHHHHHHHh
Q 010917 329 SVGGIQVDGQFRTRMPGIFAIGDVAA-FPLKMYDRTARVEHVDHARQSAQHCIKALL 384 (497)
Q Consensus 329 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~g~~~~~~~~~~A~~~g~~~a~~i~ 384 (497)
..|||.||.+.||+.|++||+|.|+. .... .++.. -.+...+...|+.|++++.
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG-~nrl~-gnsl~~~lvfGr~Ag~~a~ 384 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGVHG-ANRLA-SNSLLEGLVFSKRGAEKIN 384 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCCCc-cccch-hHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999974 2111 01111 2245567778888888775
No 192
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.39 E-value=7.5e-07 Score=89.53 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=71.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC--C--------------CCC----Cc-c-------ccC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE--R--------------PAL----TK-G-------YLF 111 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~--~--------------~~l----~~-~-------~l~ 111 (497)
.++|+||||||+|+++|..|++.|+ +|+|||+.+..... + -.+ .. + ...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~---~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL---DVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 4799999999999999999999998 89999998211000 0 000 00 0 000
Q ss_pred CCCC--CCCCCCCCc-----c-ccCCCCCCCCHhHHHHc-CcEEEeCCcEEEEecCCC--EEEEC-CCcEEEeccEEecc
Q 010917 112 PLDK--KPARLPGFH-----T-CVGSGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITN-SGKLLKYGSLIVAT 179 (497)
Q Consensus 112 ~~~~--~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~--~v~~~-~g~~i~~d~lvlAt 179 (497)
.... ...+..... . .........+.+.+.+. +++++.+++|+.++.+.. +++++ +|+++.+|.||-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 0000 000000000 0 00000001112223334 489999999999987653 57777 89999999999999
Q ss_pred CCC
Q 010917 180 GCT 182 (497)
Q Consensus 180 G~~ 182 (497)
|..
T Consensus 159 G~~ 161 (387)
T COG0654 159 GAN 161 (387)
T ss_pred CCc
Confidence 965
No 193
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.39 E-value=4.4e-06 Score=85.77 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHH----CC--cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCc
Q 010917 259 SLAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 327 (497)
Q Consensus 259 ~~~~~~~~~l~~----~G--V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~ 327 (497)
.+...+.+.+++ .| +++++++.|++++..+ +....|.+.+| ++.+|.||+|+|.... .+++.+|+.
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~ 283 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence 566777777777 77 8899999999998653 33445777777 5999999999997653 556666653
No 194
>PRK07588 hypothetical protein; Provisional
Probab=98.39 E-value=1.8e-06 Score=86.98 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=70.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C-----C---------CCCcccc-----C-------CC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R-----P---------ALTKGYL-----F-------PL 113 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~-~-----~---------~l~~~~l-----~-------~~ 113 (497)
.||+||||||+|+++|..|++.|+ +|+|+|+.+...-. + + .+...+. . ..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 389999999999999999999998 89999998643100 0 0 0000000 0 00
Q ss_pred CCCCCCCC--CCccccCCCCCCC----CHhHH---HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCC
Q 010917 114 DKKPARLP--GFHTCVGSGGERQ----TPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT 182 (497)
Q Consensus 114 ~~~~~~~~--~~~~~~~~~~~~~----~~~~~---~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~ 182 (497)
......+. .+....+...... +...+ ...+++++.+++|++++.+.. ++++++|+.+.+|.||-|.|..
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 00000000 0000000000000 11111 123689999999999986554 4677888889999999999975
Q ss_pred CC
Q 010917 183 AS 184 (497)
Q Consensus 183 ~~ 184 (497)
..
T Consensus 158 S~ 159 (391)
T PRK07588 158 SH 159 (391)
T ss_pred cc
Confidence 43
No 195
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.39 E-value=9.1e-07 Score=88.34 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=68.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCC-----CCCCCCC-------Cccc-cC
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-----KPARLPG-------FHTC-VG 128 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~-------~~~~-~~ 128 (497)
||+||||||||+++|..|++... +.+|+|||+++..++...... .+...... ....+.+ .... ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW-~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~ 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTW-CFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCccc-ccccccccchHHHHheecCceEEEeCCCceEEcc
Confidence 79999999999999999944332 449999999876633221110 00000000 0000000 0000 00
Q ss_pred --------CCCCCCCHhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917 129 --------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 129 --------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
..+...+.+.+...+ ..+.++.|..++.... .+++++|.++.++.||-|+|...
T Consensus 79 ~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 79 YPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred cceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 000001111222224 4556789999987765 67889999999999999999554
No 196
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=1.2e-06 Score=90.44 Aligned_cols=98 Identities=20% Similarity=0.361 Sum_probs=72.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||++|+.+|..|++.|. +|+|+++.+... +.. ...+ .....+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il---~~~-----------~~~~-----------~~~l~~~l 231 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL---PTE-----------DAEL-----------SKEVARLL 231 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC---CcC-----------CHHH-----------HHHHHHHH
Confidence 4799999999999999999999886 899999876421 000 0000 12345667
Q ss_pred HHcCcEEEeCCcEEEEec--CCCE--EEECCC--cEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~--~~~~--v~~~~g--~~i~~d~lvlAtG~~~~~ 185 (497)
++.||++++++++..++. +... +.+.+| +++.+|.||+|+|..|..
T Consensus 232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 888999999999999974 3332 233455 368999999999998763
No 197
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.37 E-value=1.1e-06 Score=88.88 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=34.2
Q ss_pred CcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCC
Q 010917 143 GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 143 ~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
+++++.+++|+.++.+. ..+++++|+.+.+|.||.|.|...
T Consensus 126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 69999999999886544 367778888999999999999764
No 198
>PRK14694 putative mercuric reductase; Provisional
Probab=98.37 E-value=1.5e-06 Score=89.68 Aligned_cols=96 Identities=23% Similarity=0.367 Sum_probs=71.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++++|||||+.|+..|..|++.|. +|+++++...++. . . ..+ ...+.+.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l~~----~--------~---~~~-----------~~~l~~~l 228 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVLSQ----E--------D---PAV-----------GEAIEAAF 228 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCCCC----C--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 8999986432110 0 0 000 12346677
Q ss_pred HHcCcEEEeCCcEEEEecCCCE--EEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.||+++.++.+..++.+... +.+++ .++.+|.||+|+|..|+.
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 8899999999999999876553 33334 469999999999998864
No 199
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.37 E-value=3e-06 Score=87.00 Aligned_cols=103 Identities=22% Similarity=0.428 Sum_probs=73.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcch------hhcc----C--HHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QRLF----T--PSLAQRYEQLYQQNGVKFVKGASIK 282 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~------~~~~----~--~~~~~~~~~~l~~~GV~i~~~~~v~ 282 (497)
++|+|||+|+.|+.+|..|++++ .+|+|+++.+.+. +... . .++.....+.+++.||+++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 47999999999999999999876 4899999887531 1111 1 1223334466788999999999999
Q ss_pred EEEeCCCCcEEEEEe-CCCcEEE--cCEEEEeccCcCCCcch
Q 010917 283 NLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVSPF 321 (497)
Q Consensus 283 ~i~~~~~~~v~~v~~-~~g~~i~--~D~vv~a~G~~p~~~~~ 321 (497)
+++.. +..+ .+.. .+++++. +|.+|+|+|.+|+...+
T Consensus 81 ~id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i 120 (444)
T PRK09564 81 KVDAK-NKTI-TVKNLKTGSIFNDTYDKLMIATGARPIIPPI 120 (444)
T ss_pred EEECC-CCEE-EEEECCCCCEEEecCCEEEECCCCCCCCCCC
Confidence 99854 2222 2322 2356666 99999999999875433
No 200
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.37 E-value=5.9e-07 Score=90.46 Aligned_cols=47 Identities=30% Similarity=0.355 Sum_probs=35.4
Q ss_pred HhHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917 136 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 136 ~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
.+.+++.+++++.++.|+.+..... .+.+ ++..+.+|+||+|||...
T Consensus 112 ~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 112 LNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 3445667999999999999876544 3444 456789999999999754
No 201
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.37 E-value=1.4e-06 Score=88.97 Aligned_cols=95 Identities=15% Similarity=0.263 Sum_probs=74.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+.+|..|++.|. +|+|+++.+... +.+. .++ .....+.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~---~~~d-----------~~~-----------~~~l~~~l 199 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKIN---KLMD-----------ADM-----------NQPILDEL 199 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccc---hhcC-----------HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 899999876421 0000 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCC
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~ 184 (497)
++.||++++++++.+++. ..+++++|+.+.+|.+++|+|..|.
T Consensus 200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence 889999999999999874 4677788888999999999998876
No 202
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.36 E-value=4.4e-06 Score=87.18 Aligned_cols=101 Identities=26% Similarity=0.378 Sum_probs=80.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Ccc-----------hhhccCHHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 282 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 282 (497)
..+|+|||||+.|+.+|..+++.|.+|+++... ..+ .+....+++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 357999999999999999999999999999753 111 0111345778888899999999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917 283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 318 (497)
Q Consensus 283 ~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~ 318 (497)
+++..+ + ...+.+.+|+++.+|.||+|+|.+|..
T Consensus 291 ~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAA-G-LIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998643 2 235677888899999999999998753
No 203
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.36 E-value=5e-06 Score=86.64 Aligned_cols=101 Identities=25% Similarity=0.361 Sum_probs=79.7
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Ccch-----------hhccCHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASI 281 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v 281 (497)
...+|+|||||+.|+.+|..+++.|.+|+++... ..+. +....+++...+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 3468999999999999999999999999998642 1111 01134567778888889999999999999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
.+++..+ +. ..+.+++|+.+.+|.+|+|+|..|.
T Consensus 291 ~~I~~~~-~~-~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 291 KKIETED-GL-IVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred EEEEecC-Ce-EEEEECCCCEEEeCEEEECCCCCcC
Confidence 9997543 22 3567788889999999999999875
No 204
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.36 E-value=1.4e-06 Score=89.27 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=74.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++++|||||+.|+.+|..+++.|. +|+++++.+.... .+ ..++ ...+.+.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~-----------d~~~-----------~~~l~~~l 217 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELILR---GF-----------DDDM-----------RALLARNM 217 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCCc---cc-----------CHHH-----------HHHHHHHH
Confidence 4789999999999999999999886 8999998764210 00 0000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.|++++.++++..++... ..+.+.+++++.+|.||+|+|..|..
T Consensus 218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 88899999999999987533 35666678889999999999988763
No 205
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.36 E-value=7.6e-07 Score=89.46 Aligned_cols=119 Identities=19% Similarity=0.273 Sum_probs=69.8
Q ss_pred cEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-CCCCcc---c-----cCCC----CCCCCCC--
Q 010917 62 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYE-----R-PALTKG---Y-----LFPL----DKKPARL-- 120 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~~~~~-----~-~~l~~~---~-----l~~~----~~~~~~~-- 120 (497)
||+||||||||+++|..|+++| + +|+|+|+.+..... + ..+... . +... ......+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 6999999999999999999999 8 89999998653221 0 000000 0 0000 0000000
Q ss_pred --C---CCcccc----CCC---C-------CCCCHhHHHH-cCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEec
Q 010917 121 --P---GFHTCV----GSG---G-------ERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA 178 (497)
Q Consensus 121 --~---~~~~~~----~~~---~-------~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlA 178 (497)
. +..... +.. + ...+.+.+.+ .|++++.+++|+++..+.. ++++++|.++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 000000 000 0 0011122233 3899999999999865443 567778888999999999
Q ss_pred cCCCC
Q 010917 179 TGCTA 183 (497)
Q Consensus 179 tG~~~ 183 (497)
.|...
T Consensus 158 dG~~S 162 (382)
T TIGR01984 158 DGANS 162 (382)
T ss_pred cCCCh
Confidence 99764
No 206
>PRK06116 glutathione reductase; Validated
Probab=98.36 E-value=1.5e-06 Score=89.15 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=75.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+..|..|++.|. +|+++++.+... +.. . ..+ ...+.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~--------~---~~~-----------~~~l~~~L 218 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPL---RGF--------D---PDI-----------RETLVEEM 218 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCc---ccc--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999986 899999875421 000 0 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.|++++++++|.+++.+. ..+.+.+|+++.+|.+|+|+|..|..
T Consensus 219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 219 EKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred HHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 88999999999999997642 34667788889999999999988763
No 207
>PRK06185 hypothetical protein; Provisional
Probab=98.36 E-value=1.2e-06 Score=88.91 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
...+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 356899999999999999999999998 8999999753
No 208
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.35 E-value=2.6e-05 Score=79.73 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=75.9
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc---------------------------------------
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------------------------------- 255 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~--------------------------------------- 255 (497)
..++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 35889999999999999999999999999999864321110
Q ss_pred --------------------cCHHHHHHHHHHHHHCCcE--EEcCCeEEEEEeCCCCcEEEEEeCC--Cc--EEEcCEEE
Q 010917 256 --------------------FTPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIV 309 (497)
Q Consensus 256 --------------------~~~~~~~~~~~~l~~~GV~--i~~~~~v~~i~~~~~~~v~~v~~~~--g~--~i~~D~vv 309 (497)
-..++.+++++..+..|+. +.++++|++++..++.. .|.+.+ +. +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w--~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKW--RVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeE--EEEEEcCCCceEEEEcCEEE
Confidence 0135667788888888988 88999999998653322 344432 22 46799999
Q ss_pred Eecc--CcCCCc
Q 010917 310 IGIG--AKPTVS 319 (497)
Q Consensus 310 ~a~G--~~p~~~ 319 (497)
+|+| ..|+..
T Consensus 167 vAtG~~~~P~~P 178 (461)
T PLN02172 167 VCNGHYTEPNVA 178 (461)
T ss_pred EeccCCCCCcCC
Confidence 9999 466544
No 209
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.34 E-value=1.9e-06 Score=87.86 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=34.8
Q ss_pred cCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 56 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 56 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
+..+++||+||||||||++||..|+++|+ +|+|+|+...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~ 73 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD 73 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 35567899999999999999999999998 8999999753
No 210
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.34 E-value=1.1e-05 Score=83.14 Aligned_cols=54 Identities=26% Similarity=0.420 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
..+...+.+.+++.|++++.++.|.+++.+ +. ..|.+.+| ++.+|.||+|+|.-
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~-~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEG--QP-AVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeC--Cc-eEEEeCCc-EEECCEEEEccccc
Confidence 456677778889999999999999999742 22 34666666 59999999999854
No 211
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.34 E-value=1.8e-06 Score=87.03 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHh
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 137 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (497)
..+++++|||||+-|+..|..+++.|. +|||+|+.+.. +...++.. ...+.+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~i-----------Lp~~D~ei--------------~~~~~~ 222 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRI-----------LPGEDPEI--------------SKELTK 222 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCC-----------CCcCCHHH--------------HHHHHH
Confidence 345799999999999999999999997 89999998763 11111111 133556
Q ss_pred HHHHcCcEEEeCCcEEEEecCCC--EEEECCCc--EEEeccEEeccCCCCC
Q 010917 138 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTAS 184 (497)
Q Consensus 138 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~--~i~~d~lvlAtG~~~~ 184 (497)
.+++.++++++++.+..+...+. .+.++++. .+.+|++++|+|-.|+
T Consensus 223 ~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 223 QLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred HHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccC
Confidence 67777899999999998876654 56677766 6899999999998776
No 212
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.34 E-value=1.9e-06 Score=86.01 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=30.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
+||+|||||++|+++|++|+++|+ +|+|+|++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~---~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGL---SVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 489999999999999999999987 899999975
No 213
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.33 E-value=4.7e-06 Score=81.75 Aligned_cols=95 Identities=24% Similarity=0.419 Sum_probs=70.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccchh-------------------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQ------------------------------------------- 253 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~~~------------------------------------------- 253 (497)
.|+|||||..|+|.|..+++.|.+|.++... +.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999999433 11100
Q ss_pred ---------hccCH-HHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 254 ---------RLFTP-SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 254 ---------~~~~~-~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
...|. .+...+++.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|+|.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 01222 345667777777 689987 457999875 478999999999999999999999998
No 214
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.33 E-value=1.1e-06 Score=88.77 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=34.5
Q ss_pred cCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCC
Q 010917 142 KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 142 ~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~ 184 (497)
.|++++.+++|+.+..... .++++++..+.+|.||.|.|....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 3799999999998865443 567778888999999999997643
No 215
>PRK11445 putative oxidoreductase; Provisional
Probab=98.33 E-value=2.8e-06 Score=84.20 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC---CCcc---cc-----CCCCCCCC-------
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA---LTKG---YL-----FPLDKKPA------- 118 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~---~~~~~~---l~~~---~l-----~~~~~~~~------- 118 (497)
++||+||||||||+++|..|++. + +|+|+|+.+.. ++..+. ++.. .+ ........
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~ 76 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAV 76 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecccccee
Confidence 36999999999999999999998 7 89999998643 122110 1100 00 00000000
Q ss_pred ---CCCC-CccccCCCCCC----CCHhHH---HHcCcEEEeCCcEEEEecCCC--EEEE-CCCc--EEEeccEEeccCCC
Q 010917 119 ---RLPG-FHTCVGSGGER----QTPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLIT-NSGK--LLKYGSLIVATGCT 182 (497)
Q Consensus 119 ---~~~~-~~~~~~~~~~~----~~~~~~---~~~~v~~~~~~~v~~i~~~~~--~v~~-~~g~--~i~~d~lvlAtG~~ 182 (497)
++.. .....+..... .+.+++ ...+++++.++.+..+..... .+.+ ++|+ ++.+|.||.|+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 77 KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0000 00000000000 111222 235899999989988865443 3443 4554 68999999999986
Q ss_pred C
Q 010917 183 A 183 (497)
Q Consensus 183 ~ 183 (497)
.
T Consensus 157 S 157 (351)
T PRK11445 157 S 157 (351)
T ss_pred c
Confidence 4
No 216
>PRK06847 hypothetical protein; Provisional
Probab=98.33 E-value=7.7e-06 Score=81.95 Aligned_cols=101 Identities=26% Similarity=0.348 Sum_probs=78.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh------------------------------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------ 253 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------ 253 (497)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56899999999999999999999999999987642100
Q ss_pred ---hc----------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 254 ---RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 254 ---~~----------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
.. ...++.+.+.+.+++.|++++.++++++++..++ . ..+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~-~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-G-VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-E-EEEEEcCCCEEEcCEEEECcCC
Confidence 00 0023455666777788999999999999986433 3 3577888999999999999998
Q ss_pred cCCC
Q 010917 315 KPTV 318 (497)
Q Consensus 315 ~p~~ 318 (497)
.+..
T Consensus 162 ~s~~ 165 (375)
T PRK06847 162 YSKV 165 (375)
T ss_pred Ccch
Confidence 7654
No 217
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.33 E-value=2.2e-06 Score=90.22 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=33.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
+.+.+|+||||||+|+++|..|++.|+ +|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 356799999999999999999999998 8999999874
No 218
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.33 E-value=1.6e-06 Score=87.23 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=70.2
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-CCCCc---cc-----cCCCC-C-CCCCCCCCc
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---GY-----LFPLD-K-KPARLPGFH 124 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~------~-~~l~~---~~-----l~~~~-~-~~~~~~~~~ 124 (497)
||+||||||||+++|..|+++|+ +|+|+|+.+..... + ..+.. .. +.... . ......+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 69999999999999999999998 89999999753111 0 00000 00 00000 0 000000000
Q ss_pred ----------ccc-----C---------CCCCCCCHhHHHHcC-cEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEe
Q 010917 125 ----------TCV-----G---------SGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV 177 (497)
Q Consensus 125 ----------~~~-----~---------~~~~~~~~~~~~~~~-v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvl 177 (497)
... . ......+.+.+.+.+ ++++.+++|+.++.... .+.+++|+.+.+|.||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 000 0 000001112234455 99999999999876554 45667888899999999
Q ss_pred ccCCCC
Q 010917 178 ATGCTA 183 (497)
Q Consensus 178 AtG~~~ 183 (497)
|.|...
T Consensus 158 adG~~S 163 (385)
T TIGR01988 158 ADGANS 163 (385)
T ss_pred eCCCCC
Confidence 999764
No 219
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.32 E-value=1.8e-06 Score=88.94 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=74.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+.+|..|++.|. +|+|+++.+... +.+ + .++ ...+.+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~l~~~l 226 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL---SFL--------D---DEI-----------SDALSYHL 226 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---CcC--------C---HHH-----------HHHHHHHH
Confidence 5799999999999999999999987 899999876421 000 0 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.|++++.+++++.++.... .+.+.+++++.+|.+++|+|.+|..
T Consensus 227 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 227 RDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 888999999999999875433 4556778889999999999988763
No 220
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.32 E-value=2.2e-06 Score=85.94 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
++||+|||||++|+++|++|+++|+ +|+|+|++.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~---~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL---RVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC---eEEEEeccc
Confidence 5799999999999999999999997 899999875
No 221
>PRK07846 mycothione reductase; Reviewed
Probab=98.32 E-value=2.1e-06 Score=87.93 Aligned_cols=97 Identities=26% Similarity=0.357 Sum_probs=71.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ . .++ ...+.+ +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll---~~~--------d---~~~-----------~~~l~~-l 216 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL---RHL--------D---DDI-----------SERFTE-L 216 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc--------C---HHH-----------HHHHHH-H
Confidence 4799999999999999999999886 899999876431 000 0 000 011122 3
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
.+.++++++++++++++.... .+.+.+++++++|.|++|+|..|..
T Consensus 217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 356899999999999986543 4566778889999999999988763
No 222
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.32 E-value=5.8e-07 Score=88.00 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=31.1
Q ss_pred cCcEEEeCCcEEEEecCCC---EEEECCCcEEEeccEEeccCC
Q 010917 142 KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC 181 (497)
Q Consensus 142 ~~v~~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lvlAtG~ 181 (497)
.+++++. .+|+.+..++. -|.+.+|..+.+|.+|+|||.
T Consensus 109 ~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 109 PNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 4789875 68999987665 467889999999999999997
No 223
>PRK06753 hypothetical protein; Provisional
Probab=98.31 E-value=2.7e-06 Score=85.22 Aligned_cols=116 Identities=20% Similarity=0.172 Sum_probs=68.7
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCCccc------------cCCCC
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKGY------------LFPLD 114 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~---------------~l~~~~------------l~~~~ 114 (497)
+|+||||||||+++|..|+++|+ +|+|+|+.+....... .+.... .....
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 79999999999999999999998 8999999875321100 000000 00000
Q ss_pred CCCCCCCCCccccCCCCCC----CCHhHHHH--cCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917 115 KKPARLPGFHTCVGSGGER----QTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
.....++ + ..+..... .+.+.+.+ .+.+++.+++|++++.++. .+++++|+++.+|.||-|.|...
T Consensus 79 ~~~~~~~-~--~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 79 TLLNKVK-L--KSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred CEEeecc-c--ccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 0000000 0 00000000 11222222 2457888999999976554 56778888899999999999653
No 224
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.31 E-value=1.8e-06 Score=78.26 Aligned_cols=105 Identities=21% Similarity=0.322 Sum_probs=73.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--ccCH-----------HHH--H--HHHHHHHHCCcEEEcCCe
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFTP-----------SLA--Q--RYEQLYQQNGVKFVKGAS 280 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--~~~~-----------~~~--~--~~~~~l~~~GV~i~~~~~ 280 (497)
+|+|||||+.|+.+|..|++.+.+++++++.+..... .+.. ... . .+.+.+...+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 5899999999999999999999999999776532110 0000 011 1 334445778999999999
Q ss_pred EEEEEeCCCC------cEEEEEeCCCcEEEcCEEEEeccCcCCCcchh
Q 010917 281 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 322 (497)
Q Consensus 281 v~~i~~~~~~------~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~ 322 (497)
+.+++..... .+......++.++.+|.+|+|+|..|+...+.
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~ 128 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP 128 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecC
Confidence 9999865331 11122445667899999999999988755444
No 225
>PRK06370 mercuric reductase; Validated
Probab=98.31 E-value=2.6e-06 Score=87.86 Aligned_cols=98 Identities=15% Similarity=0.241 Sum_probs=72.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+.+|..|++.|. +|+|+++.+...- .. . .++ .....+.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------~---~~~-----------~~~l~~~l 222 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLLP---RE--------D---EDV-----------AAAVREIL 222 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCCc---cc--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 8999998765310 00 0 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEE---CCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~---~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.|++++++++|..++..+. .+.+ .++.++.+|.||+|+|..|..
T Consensus 223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 888999999999999986543 3333 234579999999999998763
No 226
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.31 E-value=2.8e-06 Score=84.54 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=65.8
Q ss_pred cEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCC------CCCCccccCCC-CCCCCCCCCCcccc-----
Q 010917 62 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYAPYER------PALTKGYLFPL-DKKPARLPGFHTCV----- 127 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~~~~~~------~~l~~~~l~~~-~~~~~~~~~~~~~~----- 127 (497)
||+|||||+||+++|..|++. |+ +|+|+|+.+...-++ ..+........ .....+++......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~---~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~ 77 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDF---RIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRR 77 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCC---eEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhh
Confidence 699999999999999999987 66 899999986332111 11110000000 00000111000000
Q ss_pred --CCCCC-C---CCHhH-HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCC
Q 010917 128 --GSGGE-R---QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 128 --~~~~~-~---~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
+..+. . .+.+. +++.+..++++++|..++.+ .+++.+|+++.+|.||-|.|..+
T Consensus 78 ~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 78 KLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 00000 0 01111 22234446778899988654 47778899999999999999764
No 227
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.31 E-value=5.2e-07 Score=91.74 Aligned_cols=117 Identities=22% Similarity=0.268 Sum_probs=29.7
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-----CCCc---------c----ccCCCCC---CCC-C
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-----ALTK---------G----YLFPLDK---KPA-R 119 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~-----~l~~---------~----~l~~~~~---~~~-~ 119 (497)
||||||||+||++||..+++.|. +|+|||+.+.+..... .... + +...... ... .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 79999999999999999999998 8999999986532100 0000 0 0000000 000 0
Q ss_pred CCCC---ccccCCCCCCCCHhHHHHcCcEEEeCCcEEEEecCCCE---EEECC---CcEEEeccEEeccCC
Q 010917 120 LPGF---HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNS---GKLLKYGSLIVATGC 181 (497)
Q Consensus 120 ~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---g~~i~~d~lvlAtG~ 181 (497)
..+. ...........+.+++.+.|+++++++.+..+..++.+ |.+.+ ..++.++.+|-|||-
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 00011111234556667789999999999998877643 34433 457899999999994
No 228
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.31 E-value=2.3e-06 Score=86.12 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=30.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 95 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~ 95 (497)
+||+||||||||++||+.|++.|+ +|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 589999999999999999999998 89999997
No 229
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.30 E-value=2.4e-06 Score=87.54 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+..|..|++.|. +|+|+++.+... +.+. ..+ .....+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il---~~~d-----------~~~-----------~~~~~~~l 217 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL---RSFD-----------SMI-----------SETITEEY 217 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC---cccC-----------HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 899999875421 0000 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCC---CEEEECCC-cEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~---~~v~~~~g-~~i~~d~lvlAtG~~~~~ 185 (497)
++.||++++++.++.++.+. ..+.++++ +.+.+|.+++|+|..|..
T Consensus 218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 88899999999999987542 24666677 579999999999988763
No 230
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.29 E-value=2.3e-06 Score=90.30 Aligned_cols=37 Identities=30% Similarity=0.307 Sum_probs=32.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
..||||||||.||++||.++++.|. ..+|+|+||...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 4799999999999999999998863 348999999863
No 231
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.28 E-value=2.6e-06 Score=87.79 Aligned_cols=98 Identities=23% Similarity=0.321 Sum_probs=72.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+.+|..|++.|. +|+|+++.+... |.. . .++ ...+.+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d---~~~-----------~~~l~~~l 223 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL---PNE--------D---AEV-----------SKEIAKQY 223 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC---Ccc--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 899999765320 000 0 000 12345677
Q ss_pred HHcCcEEEeCCcEEEEecCCCE--EEEC--CC--cEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQT--LITN--SG--KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~--~g--~~i~~d~lvlAtG~~~~~ 185 (497)
++.||+++++++|..++.+... +.+. +| .++++|.||+|+|..|..
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 8899999999999999765543 3333 55 369999999999988763
No 232
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.28 E-value=5.9e-06 Score=84.05 Aligned_cols=100 Identities=23% Similarity=0.363 Sum_probs=72.4
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccC----------HHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT----------PSLAQRYEQLYQQNGVKFVKGASIKNL 284 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~----------~~~~~~~~~~l~~~GV~i~~~~~v~~i 284 (497)
..++|||||||+.|+.+|..|...+.+||+|++.+.+....+- ..+...+.+.++..+++++.+ +|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence 4578999999999999999997777899999988764322111 122333455566778988765 78999
Q ss_pred EeCCCCcEEEEEe----------CCCcEEEcCEEEEeccCcCCCc
Q 010917 285 EAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTVS 319 (497)
Q Consensus 285 ~~~~~~~v~~v~~----------~~g~~i~~D~vv~a~G~~p~~~ 319 (497)
+.. +.. +.+ .+|+++++|.+|+|+|.+|+..
T Consensus 88 d~~-~~~---v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DFE-EKR---VKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred EcC-CCE---EEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 854 222 333 4567899999999999997643
No 233
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28 E-value=4.1e-06 Score=83.55 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=72.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcchhhcc----------CHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917 218 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKGASIKNL 284 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~~----------~~~~~~~~~~~l~~~GV~i~~~~~v~~i 284 (497)
+|+|||||+.|+.+|..+.+. +.+|+++++.+....... ..++...+.+.+++.||+++.+ +|+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999999643 578999998765321100 1223334566677889999876 78999
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917 285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 319 (497)
Q Consensus 285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~ 319 (497)
+..+ + .|.+.+|+++.+|.+|+|+|.+|+..
T Consensus 80 d~~~--~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DPDR--R--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred eccc--C--EEEECCCCcccccEEEEccCCCCCCC
Confidence 8542 2 47788898899999999999998754
No 234
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.27 E-value=2.8e-06 Score=87.54 Aligned_cols=98 Identities=19% Similarity=0.341 Sum_probs=72.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+.+|..|++.|. +|+|+++.+... +.. . ..+ .....+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~l~~~l 217 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL---PRE--------E---PEI-----------SAAVEEAL 217 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC---Ccc--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 899999876421 000 0 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEEC---CCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~---~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.||+++++++|..++.++. .+.+. +++++.+|.+|+|+|..|..
T Consensus 218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 888999999999999876543 34432 23579999999999988764
No 235
>PRK06996 hypothetical protein; Provisional
Probab=98.27 E-value=2.2e-06 Score=86.53 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=34.4
Q ss_pred cCCCCCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCC
Q 010917 56 FANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEA 96 (497)
Q Consensus 56 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~ 96 (497)
|.++.+||+||||||+|+++|..|++.|. +..+|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 45667899999999999999999999872 123799999975
No 236
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.26 E-value=3.4e-06 Score=86.86 Aligned_cols=98 Identities=15% Similarity=0.295 Sum_probs=74.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++++|||||+.|+..|..|++.|. +|+++++.+...- .... .. .....+.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~l~-----------~~d~---~~-----------~~~l~~~L 228 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRVLP-----------GEDA---DA-----------AEVLEEVF 228 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcCCC-----------CCCH---HH-----------HHHHHHHH
Confidence 4689999999999999999999987 8999998754210 0000 00 12345677
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.||+++.++++.+++.... .+.+.+|+++.+|.+++|+|..|..
T Consensus 229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 889999999999999864433 4566778889999999999988764
No 237
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.25 E-value=5.8e-06 Score=85.96 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=33.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
...||||||+|.||++||..+++.|. +|+||||.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga---~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGM---NPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence 46899999999999999999999997 8999999874
No 238
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.25 E-value=2.5e-07 Score=91.76 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
+||+||||||||+++|..|+++|+ +|+|||+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence 589999999999999999999998 89999998753
No 239
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.25 E-value=2.9e-05 Score=80.09 Aligned_cols=68 Identities=22% Similarity=0.463 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeccCcCCCcchhhcCCc
Q 010917 258 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 327 (497)
Q Consensus 258 ~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~ 327 (497)
..+...+.+.+++.| +++++++.|++++..+++.+ .+. +.+|+ ++.++.||+|.|.... .+++.+|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 356677777788876 99999999999987555533 233 23453 6999999999998754 566666654
No 240
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.25 E-value=5.2e-06 Score=90.67 Aligned_cols=99 Identities=19% Similarity=0.439 Sum_probs=74.5
Q ss_pred EEEEcCCHHHHHHHHHHHhCC---CcEEEEecCCcch------hhccC-----HHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917 219 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL------QRLFT-----PSLAQRYEQLYQQNGVKFVKGASIKNL 284 (497)
Q Consensus 219 vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~~~------~~~~~-----~~~~~~~~~~l~~~GV~i~~~~~v~~i 284 (497)
|||||+|+.|+.+|..|.+++ .+|||+++.+.+. +..+. +++.....+.+++.||+++.++.|++|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988754 5899999887642 11111 112222356678899999999999999
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917 285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 321 (497)
Q Consensus 285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~ 321 (497)
+.. .+ .|.+.+|+++++|.+|+|||..|+...+
T Consensus 81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p~i 113 (785)
T TIGR02374 81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFILPI 113 (785)
T ss_pred ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCCCC
Confidence 853 22 4677889899999999999999875433
No 241
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=3.7e-06 Score=86.90 Aligned_cols=98 Identities=14% Similarity=0.273 Sum_probs=72.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+.+|..|++.|. +|+|+++.+... +.. . ..+ .....+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~~~~~l 234 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFL---AAA--------D---EQV-----------AKEAAKAF 234 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccC---CcC--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999886 899999876421 000 0 000 12335667
Q ss_pred HHcCcEEEeCCcEEEEecCCCE--EEECC--C--cEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQT--LITNS--G--KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~--g--~~i~~d~lvlAtG~~~~~ 185 (497)
++.|++++++++|.+++.+... +.+.+ | ..+++|.|++|+|..|..
T Consensus 235 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred HHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 7889999999999999865443 34333 3 468999999999998763
No 242
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.24 E-value=2.7e-05 Score=78.85 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
..++.+.+.+.++..|.++++++.|++|..++++++..|++.+|+++.|+.||....+.|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4467888888889999999999999999876567778899999999999999998888776
No 243
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.23 E-value=3e-06 Score=86.59 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=33.9
Q ss_pred CcEEEeCCcEEEEec---------CCCEEEECCCcEEEeccEEeccCCCC
Q 010917 143 GIEMIYQDPVTSIDI---------EKQTLITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 143 ~v~~~~~~~v~~i~~---------~~~~v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
+++++.+++|+.++. +..++++.+|+++++|.||-|-|...
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence 489999999999863 22367788999999999999999864
No 244
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.23 E-value=8.1e-06 Score=82.96 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=67.4
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC---------CCcccc-----CCC--------
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA---------LTKGYL-----FPL-------- 113 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~------~~---------l~~~~l-----~~~-------- 113 (497)
+|+|||||+|||++|..|++.|+ .+|+|+|+.+...-.. |. +...+. ...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~--~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSH--LNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFE 79 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC--CCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEE
Confidence 79999999999999999999873 1799999986532100 00 000000 000
Q ss_pred --CCCCCCCCCCccccCCCC--CC--CCHhHH-HHc-CcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCC
Q 010917 114 --DKKPARLPGFHTCVGSGG--ER--QTPEWY-KEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 183 (497)
Q Consensus 114 --~~~~~~~~~~~~~~~~~~--~~--~~~~~~-~~~-~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~ 183 (497)
......+.+.....+... .. .+.+.+ +.. +..++++++|++++.... ++++++|.++.+|.||.|.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 000000000000000000 00 011222 221 456788999999876443 56778888899999999999764
No 245
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.23 E-value=5e-06 Score=83.82 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
.||+||||||||++||..|++.|+ +|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 489999999999999999999998 8999999753
No 246
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.23 E-value=3.4e-06 Score=85.55 Aligned_cols=98 Identities=17% Similarity=0.318 Sum_probs=78.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++++|||+|+.|+.+|..|+++|+ +|+++|..+...-. +.. ..+ ...+.+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~--------~~~-----~~~-----------~~~~~~~l 188 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ--------LLD-----PEV-----------AEELAELL 188 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh--------hhh-----HHH-----------HHHHHHHH
Confidence 5899999999999999999999998 89999998764211 000 001 13456778
Q ss_pred HHcCcEEEeCCcEEEEecCCCE-----EEECCCcEEEeccEEeccCCCCC
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~-----v~~~~g~~i~~d~lvlAtG~~~~ 184 (497)
++.||+++++..+..++...+. +...++..+++|.+++++|.+|.
T Consensus 189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 8999999999999999987653 56778888999999999999985
No 247
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=4.8e-06 Score=85.78 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=71.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+..|..+++.|. +|+|+++.+... +.+ . ..+ .....+.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il---~~~--------d---~~~-----------~~~l~~~l 225 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC---PGT--------D---TET-----------AKTLQKAL 225 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC---CCC--------C---HHH-----------HHHHHHHH
Confidence 5799999999999999999999987 899999865421 000 0 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEEC---C--CcEEEeccEEeccCCCCC
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITN---S--GKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~---~--g~~i~~d~lvlAtG~~~~ 184 (497)
++.||++++++++.++..... .+.+. + ++.+++|.|++|+|..|.
T Consensus 226 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 226 TKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred HhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 888999999999999976433 23332 2 357999999999998876
No 248
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.22 E-value=2.2e-05 Score=80.82 Aligned_cols=68 Identities=24% Similarity=0.417 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE---eCCC--cEEEcCEEEEeccCcCCCcchhhcCCc
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN 327 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~---~~~g--~~i~~D~vv~a~G~~p~~~~~~~~gl~ 327 (497)
..+...+.+.++++|++++.+++|++++..+++.+. +. +.+| .++.+|.||+|+|.... .+++.+|+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~ 250 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence 466777888888899999999999999865444322 22 2334 36899999999998653 566666654
No 249
>PLN02507 glutathione reductase
Probab=98.22 E-value=4.3e-06 Score=86.64 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=74.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+..|..|++.|. +|+|+++.+... +.+ . .++ .....+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~l~~~l 254 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELPL---RGF--------D---DEM-----------RAVVARNL 254 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCcC---ccc--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999886 899999875320 000 0 000 12345567
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.||+++++++|.+++.... .+.+.+|+++.+|.+++|+|..|..
T Consensus 255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 888999999999999875432 4566678889999999999988763
No 250
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.21 E-value=4.2e-06 Score=84.63 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
.+|+|||||+||+++|..|++.|+ +|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 689999999999999999999998 8999999864
No 251
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.21 E-value=2.9e-05 Score=79.59 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=47.2
Q ss_pred HHHHHHHHHHH-HCCcEEEcCCeEEEEEeCCCCcE-EEEE-eCCCc--EEEcCEEEEeccCcCCCcchhhcCCc
Q 010917 259 SLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRV-AAVK-LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 327 (497)
Q Consensus 259 ~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~~~v-~~v~-~~~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~ 327 (497)
.+.+.+.+.+. ..|+++++++.|..++..+++.. ..+. +.+++ ++.+|.||+|.|.... .+++.+|+.
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~ 257 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 45566666665 45999999999999986534332 2222 34442 6899999999998874 667777664
No 252
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.21 E-value=3e-06 Score=88.80 Aligned_cols=35 Identities=26% Similarity=0.540 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
..+||+|||||..|+++|+.|+++|+ +|+|||+.+
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~---~V~LlEk~d 39 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGL---RCILVERHD 39 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCC---eEEEEECCC
Confidence 35899999999999999999999998 899999975
No 253
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.21 E-value=2.8e-06 Score=85.03 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=30.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
.||+||||||+|+++|..|++.|+ +|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGI---KTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCC---eEEEecCCC
Confidence 689999999999999999999998 899999863
No 254
>PLN02487 zeta-carotene desaturase
Probab=98.20 E-value=6e-06 Score=86.04 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=47.3
Q ss_pred cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC--CC--cEEEEEe---CCCcEEEcCEEEEeccCc
Q 010917 256 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 256 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~~--~v~~v~~---~~g~~i~~D~vv~a~G~~ 315 (497)
+...+.+.+.+.++++|.+|++++.|.+|+... ++ ++.++.+ .+++.+++|.||++++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 344577888899999999999999999998652 33 3677777 344579999999999864
No 255
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.20 E-value=5.1e-06 Score=82.36 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=70.3
Q ss_pred ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc--------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917 214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE 285 (497)
Q Consensus 214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~--------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~ 285 (497)
..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.... .+.+......+.+.+.|++++.++.+..+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~ 95 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE 95 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence 457899999999999999999999999999999987654211 122333344456677899999998876553
Q ss_pred e---CCCCcEE--EEEeCCCcEEEcCEEEEeccCc-CC
Q 010917 286 A---GSDGRVA--AVKLEDGSTIDADTIVIGIGAK-PT 317 (497)
Q Consensus 286 ~---~~~~~v~--~v~~~~g~~i~~D~vv~a~G~~-p~ 317 (497)
. ..++... .+..+ +..+.+|.||+|+|.. |.
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred ccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC
Confidence 2 1111110 01111 2247899999999984 43
No 256
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.20 E-value=8.1e-06 Score=80.45 Aligned_cols=99 Identities=23% Similarity=0.448 Sum_probs=76.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcchhhcc----------CHHHHHHHHHHHHHCC-cEEEcCCeEE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNG-VKFVKGASIK 282 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~~~----------~~~~~~~~~~~l~~~G-V~i~~~~~v~ 282 (497)
.++|||+|||+.|+.++..|.+.- .+||+|++.+..+-..+ ..++...+++.++..+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 578999999999999999999874 88999999876543211 1234455777777555 998876 588
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917 283 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 319 (497)
Q Consensus 283 ~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~ 319 (497)
+|+.+ ++ .|.+.++..+++|.+|+++|.+++..
T Consensus 82 ~ID~~--~k--~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 82 DIDRD--AK--KVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEccc--CC--EEEeCCCccccccEEEEecCCcCCcC
Confidence 88753 32 57788878899999999999998753
No 257
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.19 E-value=5.4e-06 Score=85.93 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=72.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++++|||||+.|+..|..|++.|. +|||+++... + +.+.. .+ .....+.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~--l--~~~d~-----------~~-----------~~~l~~~l 232 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIP--L--RGFDR-----------QC-----------SEKVVEYM 232 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCcc--c--ccCCH-----------HH-----------HHHHHHHH
Confidence 3689999999999999999999987 8999986321 1 10100 00 12346678
Q ss_pred HHcCcEEEeCCcEEEEecCC--CEEEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.||+++.++.+..+.... ..+.+.+|+++.+|.|++|+|..|..
T Consensus 233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 88999999998888776433 24666778889999999999988763
No 258
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.19 E-value=3e-06 Score=85.23 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=32.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
.+||+||||||+|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence 4799999999999999999999998 8999999874
No 259
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.19 E-value=6.1e-06 Score=84.59 Aligned_cols=97 Identities=27% Similarity=0.368 Sum_probs=71.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++++|||||+.|+..|..|++.|. +|++|++.+... +.+. .++ ...+.+ +
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll---~~~d-----------~~~-----------~~~l~~-~ 219 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL---RHLD-----------EDI-----------SDRFTE-I 219 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc---cccC-----------HHH-----------HHHHHH-H
Confidence 4799999999999999999999986 899999876421 0000 000 011222 3
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
.+.++++++++++.+++.+.. .+.+.+|+++.+|.+++|+|..|..
T Consensus 220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 346899999999999986543 4556678889999999999988763
No 260
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.19 E-value=9.4e-06 Score=88.75 Aligned_cols=102 Identities=19% Similarity=0.432 Sum_probs=76.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC----CCcEEEEecCCcch------hhccC----HHHHHHHHHHHHHCCcEEEcCCeE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKGASI 281 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~~------~~~~~----~~~~~~~~~~l~~~GV~i~~~~~v 281 (497)
.++|||||+|+.|+.+|..|.++ +.+||++.+.+.+. +..+. .++.....+.+++.||+++.++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999764 46899998887642 11111 122222345678899999999999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 321 (497)
Q Consensus 282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~ 321 (497)
.+++.. .+ .|.+.+|+++.+|.+|+|||.+|....+
T Consensus 83 ~~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p~i 118 (847)
T PRK14989 83 ITINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIPPI 118 (847)
T ss_pred EEEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCCCC
Confidence 999753 22 4667888899999999999999875443
No 261
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.19 E-value=5.2e-06 Score=83.68 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=32.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
+.||+||||||+|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence 4799999999999999999999998 8999999874
No 262
>PRK07236 hypothetical protein; Provisional
Probab=98.18 E-value=1.2e-05 Score=80.90 Aligned_cols=100 Identities=22% Similarity=0.331 Sum_probs=72.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----ccCHHHHHHHH-------------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYE------------------------- 265 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----~~~~~~~~~~~------------------------- 265 (497)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+..... .+.+...+.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 578999999999999999999999999999988643211 01222222211
Q ss_pred ------------------HHHHH--CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 266 ------------------QLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 266 ------------------~~l~~--~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
+.|.+ .+++++.++++++++..++ .+ .+++.+|+++.+|.||.|-|....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD-RV-TARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-eE-EEEECCCCEEEeCEEEECCCCCch
Confidence 11111 1356899999999986533 33 578899999999999999997654
No 263
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.18 E-value=6e-06 Score=85.09 Aligned_cols=98 Identities=18% Similarity=0.323 Sum_probs=72.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 136 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (497)
.++++|||||+.|+..|..+... |. +|+|+++.+... +.+ + .++ .....
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~---~Vtli~~~~~il---~~~--------d---~~~-----------~~~l~ 238 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGG---KVTLCYRNNMIL---RGF--------D---STL-----------RKELT 238 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCC---eEEEEecCCccc---ccc--------C---HHH-----------HHHHH
Confidence 47999999999999999877654 54 899999876421 000 0 000 12345
Q ss_pred hHHHHcCcEEEeCCcEEEEecCC---CEEEECCCcEEEeccEEeccCCCCCc
Q 010917 137 EWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 137 ~~~~~~~v~~~~~~~v~~i~~~~---~~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
+.+++.||++++++.+.++.... ..+.+.++.++++|.+++|+|..|..
T Consensus 239 ~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 239 KQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 67788999999999999887532 35666778889999999999988763
No 264
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.18 E-value=7.1e-06 Score=84.06 Aligned_cols=97 Identities=19% Similarity=0.342 Sum_probs=72.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+..|..|++.|. +|+|+++.+... |.. . ..+ ...+.+.+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~---~~~-----------~~~l~~~l 209 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL---PRE--------D---RDI-----------ADNIATIL 209 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC---CCc--------C---HHH-----------HHHHHHHH
Confidence 4699999999999999999999987 899999875421 000 0 000 12345677
Q ss_pred HHcCcEEEeCCcEEEEecCCCEE--EECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~v--~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.||++++++++.+++.++..+ ..+++ ++.+|.+++|+|..|..
T Consensus 210 ~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 210 RDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 88999999999999998655433 33444 58999999999988763
No 265
>PLN02661 Putative thiazole synthesis
Probab=98.17 E-value=5.2e-06 Score=80.16 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYA 98 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~ 98 (497)
...||+|||||+||+.||+.|++. |+ +|+|||+....
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~---kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNV---KVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCC---eEEEEecCccc
Confidence 357999999999999999999975 55 89999997653
No 266
>PRK13748 putative mercuric reductase; Provisional
Probab=98.17 E-value=6e-06 Score=87.36 Aligned_cols=96 Identities=20% Similarity=0.322 Sum_probs=71.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+..|..|++.|. +|+|+++...++ .. . .++ ...+.+.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~----~~--------d---~~~-----------~~~l~~~l 320 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLFF----RE--------D---PAI-----------GEAVTAAF 320 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCcccc----cc--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 899998753210 00 0 000 12345677
Q ss_pred HHcCcEEEeCCcEEEEecCCCE--EEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.||++++++.+..++.++.. +.++++ .+.+|.+++|+|..|+.
T Consensus 321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 8899999999999988765443 333444 59999999999998864
No 267
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.17 E-value=1e-05 Score=88.36 Aligned_cols=91 Identities=27% Similarity=0.294 Sum_probs=68.7
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.+......+.+++.||++++++.+ .++
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~- 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT- 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence 4689999999999999999999999999999987654221 123344455557778899999999876 222
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
+.+.....+|.||+|+|..+.
T Consensus 616 ----------le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 ----------VEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ----------hhhheeccCCEEEECcCCCCC
Confidence 122334568999999999864
No 268
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.17 E-value=2.3e-05 Score=75.47 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=73.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------- 254 (497)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 4899999999999999999999999999988542110
Q ss_pred ------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEeccCcC
Q 010917 255 ------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 255 ------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vv~a~G~~p 316 (497)
.....+.+.+.+.+++.|++++.+++++++...++ .+ .+.+. ++.++.+|.||.|.|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence 01124556677778889999999999999875433 33 23333 346799999999999864
No 269
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.16 E-value=5.6e-06 Score=87.52 Aligned_cols=33 Identities=33% Similarity=0.357 Sum_probs=30.5
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
||||||||.||++||..+++.|. +|+|+||.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~---~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL---NTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence 79999999999999999999987 8999999753
No 270
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.16 E-value=1.9e-05 Score=81.56 Aligned_cols=51 Identities=20% Similarity=0.353 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313 (497)
Q Consensus 259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G 313 (497)
.+.+.+.+.+++ +++++++.|++|+..+++ + .|.+.+|+++.+|.||+++.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~-~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR-Y-EISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE-E-EEEECCCCEEEeCEEEECCC
Confidence 344455555533 579999999999876443 3 57778888899999999985
No 271
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.16 E-value=2.8e-05 Score=80.30 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=33.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHc----CCCCCcEEEEcCCCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP 99 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~----g~~~~~V~lie~~~~~~ 99 (497)
++||+|||||+|||+||+.|+++ |+ +|+|+|+++...
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence 36999999999999999999998 77 899999997653
No 272
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=6.8e-06 Score=86.98 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=31.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...||||||||.|||+||..+++.|. +|+|+||..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~---~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGL---KTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence 45799999999999999999999886 899999975
No 273
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.15 E-value=3.3e-06 Score=74.28 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=33.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
..||+||||||+||+||++|+++|. +|+++|+...+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~ 65 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSF 65 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCc---eEEEEEeeccc
Confidence 4699999999999999999999988 89999998664
No 274
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.15 E-value=7.8e-06 Score=84.38 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=70.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++++|||||+.|+.+|..|++.|. +|+|+++.... +.+.. ++ .....+.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d~-----------~~-----------~~~l~~~L 230 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFDQ-----------DC-----------ANKVGEHM 230 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEecccc----cccCH-----------HH-----------HHHHHHHH
Confidence 3689999999999999999999987 89999864211 10000 00 12345677
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEECCC---cEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g---~~i~~d~lvlAtG~~~~~ 185 (497)
++.||++++++.+..+..... .+.+.++ +++.+|.+++|+|..|..
T Consensus 231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 889999999988887765332 3555554 379999999999988763
No 275
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.15 E-value=8.3e-06 Score=86.23 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...||||||||.|||+||..+++.|. +|+||||..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGL---SVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence 45799999999999999999999887 899999974
No 276
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.15 E-value=4.2e-05 Score=76.94 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 258 PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 258 ~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
..+...+.+.+++.| ..+..++.+..++.. . ....|.+.+|+ +.+|.||+|+|...
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 466777888889999 556668888888753 2 55578888887 99999999999653
No 277
>PRK14727 putative mercuric reductase; Provisional
Probab=98.14 E-value=8.3e-06 Score=84.30 Aligned_cols=96 Identities=20% Similarity=0.366 Sum_probs=70.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+..|..|++.|. +|+|+++....+ .. . ..+ ...+.+.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l~----~~--------d---~~~-----------~~~l~~~L 238 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLLF----RE--------D---PLL-----------GETLTACF 238 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCCC----cc--------h---HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 899998642210 00 0 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
++.|+++++++++..++.... .+...++ ++.+|.+|+|+|..|+.
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 888999999999998875444 3444444 58999999999998763
No 278
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.13 E-value=1.1e-05 Score=82.64 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=30.8
Q ss_pred cEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 010917 62 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAY 97 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~~ 97 (497)
||||||||.||++||.+++++| . +|+|+||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~---~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAA---NVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCc---cEEEEecCCC
Confidence 7999999999999999999998 6 8999999864
No 279
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=1.7e-05 Score=84.57 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...||||||||.|||+||..+++.|. +|+|+||..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~---~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGY---NVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEecCC
Confidence 35799999999999999999999987 899999854
No 280
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.12 E-value=3.5e-06 Score=61.40 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=28.1
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 65 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 65 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
|||||++||++|..|++.|+ +|+|+|+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS---EEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC---cEEEEecCccc
Confidence 89999999999999999987 99999999765
No 281
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.11 E-value=2.1e-06 Score=87.41 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=29.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
||||||+|.||++||.+++++|. +|+||||.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~---~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGA---KVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT----EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcC---eEEEEEeecc
Confidence 79999999999999999999997 8999999874
No 282
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.10 E-value=1.2e-05 Score=85.14 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=30.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...||||||||.||++||.++++. . +|+|+||..
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~---~VilleK~~ 37 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-A---RTAVLTKLY 37 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-C---CEEEEeCCC
Confidence 357999999999999999999875 4 899999975
No 283
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.10 E-value=9.8e-06 Score=83.34 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=70.0
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+... ..+.++.....+.+++.||+++.++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 4689999999999999999999999999999988765211 13556777777888999999999986521
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
.+.+.+.. +.+|.||+|+|..
T Consensus 216 -------~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHHH-hhCCEEEEccCCC
Confidence 12223333 7899999999985
No 284
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.09 E-value=1.9e-05 Score=81.36 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC--CC--cEEEEEeCCC---cEEEcCEEEEeccCc
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK 315 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~~--~v~~v~~~~g---~~i~~D~vv~a~G~~ 315 (497)
+..+.+.+.+.++++|++|+.+++|++|+..+ ++ ++..+.+.+| +++++|.||+|++..
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 33455667788899999999999999998643 23 2666667544 569999999998853
No 285
>PRK07121 hypothetical protein; Validated
Probab=98.09 E-value=4.8e-05 Score=79.04 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEeccCc-CCCcchhh
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK-PTVSPFER 323 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~~-D~vv~a~G~~-p~~~~~~~ 323 (497)
...+...+.+.+++.|+++++++.++++..++++++..|...+ ++ .+.+ +.||+|+|-- .|.++++.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~~ 247 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVAR 247 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHHH
Confidence 3456777788889999999999999999765556777776543 32 5788 9999999854 34444443
No 286
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.09 E-value=1.2e-05 Score=88.86 Aligned_cols=93 Identities=24% Similarity=0.201 Sum_probs=72.6
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+.+|..|++.|++||++++.+.+... .++.++.+...+.+++.||+|++++.+-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 4799999999999999999999999999999987654321 13456666667788999999998865421
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCc-CC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT 317 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~-p~ 317 (497)
.+.+++.....+|.|++|+|.. |.
T Consensus 382 -------dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 -------TATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence 3455555556799999999984 54
No 287
>PRK06834 hypothetical protein; Provisional
Probab=98.08 E-value=5.1e-05 Score=78.45 Aligned_cols=107 Identities=23% Similarity=0.351 Sum_probs=78.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch---hh--cc-----------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QR--LF----------------------------------- 256 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~--~~----------------------------------- 256 (497)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++ .+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 469999999999999999999999999999764211 00 00
Q ss_pred ---------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917 257 ---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 321 (497)
Q Consensus 257 ---------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~ 321 (497)
-..+.+.+.+.+++.|++++.++++++++.++++ + .+++.+|+++.+|+||.|.|..+.. -
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~v--R 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLV--R 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCc--H
Confidence 0122344556667789999999999999865443 3 4667788889999999999998743 2
Q ss_pred hhcCCc
Q 010917 322 ERVGLN 327 (497)
Q Consensus 322 ~~~gl~ 327 (497)
+.+++.
T Consensus 160 ~~lgi~ 165 (488)
T PRK06834 160 KAAGID 165 (488)
T ss_pred hhcCCC
Confidence 444444
No 288
>PTZ00058 glutathione reductase; Provisional
Probab=98.08 E-value=1.2e-05 Score=83.86 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=71.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+..|..|++.|. +|+++++.+... +.. + ..+ .....+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il---~~~--------d---~~i-----------~~~l~~~L 288 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL---RKF--------D---ETI-----------INELENDM 288 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc---ccC--------C---HHH-----------HHHHHHHH
Confidence 5799999999999999999999987 899999875421 000 0 000 12345667
Q ss_pred HHcCcEEEeCCcEEEEecCCC---EEEECC-CcEEEeccEEeccCCCCC
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS 184 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~---~v~~~~-g~~i~~d~lvlAtG~~~~ 184 (497)
++.||+++++..+.+++.+.. .+...+ ++++.+|.|++|+|..|.
T Consensus 289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 888999999999999876432 233333 457999999999998776
No 289
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.00011 Score=64.83 Aligned_cols=138 Identities=22% Similarity=0.312 Sum_probs=89.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc-------------------------------------cCH
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FTP 258 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-------------------------------------~~~ 258 (497)
...|+|+|+|++|+-+|..|++.|.+|.+++++-.+.... -+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 4679999999999999999999999999999884332110 011
Q ss_pred HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeccCcCCCc-ch-hh--
Q 010917 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ER-- 323 (497)
Q Consensus 259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vv~a~G~~p~~~-~~-~~-- 323 (497)
.+...+....-+.|.+++....++.+--.++.++.++..+ |--.++++.||-+||.....- ++ +.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 2333334444567899999999998765544367776653 224789999999999875421 22 11
Q ss_pred -cCCccc-CCC--------EEecCCCCCCCCcEEEeccccc
Q 010917 324 -VGLNSS-VGG--------IQVDGQFRTRMPGIFAIGDVAA 354 (497)
Q Consensus 324 -~gl~~~-~g~--------i~vd~~~~t~~~~iya~GD~~~ 354 (497)
++.... .+. ..|+.+. --.||+|++|=.++
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~ 229 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVN 229 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHH
Confidence 122221 011 2222222 25799999997664
No 290
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.07 E-value=1.3e-05 Score=82.52 Aligned_cols=98 Identities=14% Similarity=0.271 Sum_probs=71.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
..++|+|||||+.|+..|..|++.|. +|+++++.+... +.+ . .++ .....+.
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d---~~~-----------~~~~~~~ 219 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL---PLE--------D---PEV-----------SKQAQKI 219 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cch--------h---HHH-----------HHHHHHH
Confidence 35799999999999999999999987 899999876421 000 0 000 1234556
Q ss_pred HHHcCcEEEeCCcEEEEecCCC-EEEE--CC--CcEEEeccEEeccCCCCCc
Q 010917 139 YKEKGIEMIYQDPVTSIDIEKQ-TLIT--NS--GKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 139 ~~~~~v~~~~~~~v~~i~~~~~-~v~~--~~--g~~i~~d~lvlAtG~~~~~ 185 (497)
+++. +++++++++.+++.... .+++ .+ +.++++|.+++|+|..|+.
T Consensus 220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 6777 99999999999976543 3442 23 3469999999999988763
No 291
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.07 E-value=1.3e-05 Score=84.95 Aligned_cols=35 Identities=34% Similarity=0.376 Sum_probs=32.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...||||||||.||++||.++++.|. +|+|+||..
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~---~V~lveK~~ 62 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGY---KTACISKLF 62 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEeccC
Confidence 45799999999999999999999987 899999986
No 292
>PLN02463 lycopene beta cyclase
Probab=98.06 E-value=4.2e-05 Score=77.73 Aligned_cols=98 Identities=26% Similarity=0.299 Sum_probs=73.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-hhc----------------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL---------------------------------------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~---------------------------------------- 255 (497)
-.|+|||+|+.|+.+|..|++.|.+|.++++.+... ++.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999998864211 000
Q ss_pred ---cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 256 ---FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 256 ---~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
....+.+.+.+.+.+.|++++ ..+|++++..+++ ..|.+++|+++.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 011223445555677899997 4689999865333 3578889989999999999998754
No 293
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.06 E-value=1.1e-05 Score=84.01 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=33.8
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
++.++||+|||||+.|+++|+.|+++|. +|+|+|+.+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~---~V~LlEk~d 39 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGL---KVLLCEKDD 39 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCC---cEEEEECCC
Confidence 3456899999999999999999999998 899999986
No 294
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.06 E-value=1.5e-05 Score=84.61 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=32.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...||||||+|.|||+||..+++.|. +|+|+||..
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~---~VilveK~~ 83 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGF---NTACITKLF 83 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCC---cEEEEEcCC
Confidence 35799999999999999999999987 899999985
No 295
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.06 E-value=1.1e-05 Score=85.96 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=32.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
...||||||||.|||+||..+++.|. +|+||||...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence 35799999999999999999999987 8999999753
No 296
>PRK07045 putative monooxygenase; Reviewed
Probab=98.05 E-value=5.9e-05 Score=75.97 Aligned_cols=101 Identities=21% Similarity=0.260 Sum_probs=76.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh---------h--------------------c------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R--------------------L------------ 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------~--------------------~------------ 255 (497)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999997743210 0 0
Q ss_pred -----------cC-------HHHHHHHHHHHH-HCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 256 -----------FT-------PSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 256 -----------~~-------~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
.+ ..+.+.+.+.+. ..|++++++++++.++..+++.+..+++++|+++.+|+||-|.|...
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 00 012233344443 35799999999999987766665678889999999999999999875
Q ss_pred C
Q 010917 317 T 317 (497)
Q Consensus 317 ~ 317 (497)
.
T Consensus 166 ~ 166 (388)
T PRK07045 166 M 166 (388)
T ss_pred H
Confidence 3
No 297
>PRK07538 hypothetical protein; Provisional
Probab=98.05 E-value=1.4e-05 Score=81.23 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=31.0
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
||+||||||||+++|..|+++|+ +|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence 79999999999999999999998 8999999864
No 298
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.05 E-value=5.2e-05 Score=76.48 Aligned_cols=108 Identities=28% Similarity=0.368 Sum_probs=79.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--------------hh---------------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------QR--------------------------- 254 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------------~~--------------------------- 254 (497)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+... +.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 4579999999999999999999999999999753210 00
Q ss_pred ---------cc---------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917 255 ---------LF---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310 (497)
Q Consensus 255 ---------~~---------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~ 310 (497)
.+ ...+.+.+.+.+++.|++++.++++++++..++ .+ .+++++|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-RV-RLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-eE-EEEECCCCEEEeCEEEE
Confidence 00 012334455666778999999999999986533 33 47778888999999999
Q ss_pred eccCcCCCcchhhcCCc
Q 010917 311 GIGAKPTVSPFERVGLN 327 (497)
Q Consensus 311 a~G~~p~~~~~~~~gl~ 327 (497)
|.|..+. +.+.+++.
T Consensus 164 AdG~~S~--vr~~~g~~ 178 (392)
T PRK08773 164 ADGAAST--LRELAGLP 178 (392)
T ss_pred ecCCCch--HHHhhcCC
Confidence 9999874 33444443
No 299
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.05 E-value=1.2e-05 Score=78.86 Aligned_cols=100 Identities=20% Similarity=0.333 Sum_probs=79.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
...+||++|||..|+.+|..|+...+ +||+|++++.. +. . ++.+ .+ ......+
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~-----~-lf~~------~i-----------~~~~~~y 264 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LP-----R-LFGP------SI-----------GQFYEDY 264 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hh-----h-hhhH------HH-----------HHHHHHH
Confidence 36789999999999999999999876 89999999753 11 1 1110 01 1345778
Q ss_pred HHHcCcEEEeCCcEEEEecCC----CEEEECCCcEEEeccEEeccCCCCCc
Q 010917 139 YKEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 139 ~~~~~v~~~~~~~v~~i~~~~----~~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
|++++|++++++.+.+++... ..|.+.++.++.+|-||+.+|+.|..
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred HHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 899999999999988887554 25788999999999999999999874
No 300
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.02 E-value=1.7e-05 Score=74.35 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=40.0
Q ss_pred CHhHHHHcCcEEEeCCcEEEEecC-----CCEEEECCCcEEEeccEEeccCCCCCc
Q 010917 135 TPEWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 135 ~~~~~~~~~v~~~~~~~v~~i~~~-----~~~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
+++.+++.|+.++.+..|..+... ...|.+.+|..+.++++|+++|+.-..
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 344567789999999988877632 236788899999999999999987544
No 301
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=2.4e-05 Score=82.62 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
..||||||+|.|||+||.++++.|. +|+|+||..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lleK~~ 40 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQ---SCALLSKVF 40 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCC---cEEEEEccC
Confidence 5799999999999999999999887 899999975
No 302
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.01 E-value=1.6e-05 Score=82.02 Aligned_cols=97 Identities=15% Similarity=0.304 Sum_probs=69.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHH
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 139 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (497)
.++|+|||||+.|+.+|..|++.|. +||||++.+... +.. + ..+ .....+.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il---~~~--------d---~~~-----------~~~~~~~l 225 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVI---PAA--------D---KDI-----------VKVFTKRI 225 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCC---CcC--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999987 899999876421 000 0 000 11234556
Q ss_pred HHcCcEEEeCCcEEEEecCCC--EEEECC--C--cEEEeccEEeccCCCCCc
Q 010917 140 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 140 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~--g--~~i~~d~lvlAtG~~~~~ 185 (497)
++. +++++++.+..++.... .+.+.+ + +++++|.+|+|+|..|..
T Consensus 226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 666 99999999998875443 344333 2 369999999999998763
No 303
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=81.37 Aligned_cols=89 Identities=22% Similarity=0.292 Sum_probs=68.9
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEE-EEE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIK-NLE 285 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~-~i~ 285 (497)
.+++|+|||+|+.|+.+|..|++.|+.||++++.+.+... .++.++.+...+.|++.|++|+.++++- .+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i- 200 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDI- 200 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcC-
Confidence 4689999999999999999999999999999888654321 2455778888899999999999997653 12
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 286 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 286 ~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
+++. -.-++|.|++++|..
T Consensus 201 ----------t~~~-L~~e~Dav~l~~G~~ 219 (457)
T COG0493 201 ----------TLEE-LLKEYDAVFLATGAG 219 (457)
T ss_pred ----------CHHH-HHHhhCEEEEecccc
Confidence 1111 123459999999974
No 304
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.01 E-value=1.8e-05 Score=81.04 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=69.4
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.. ..++.++.....+.+++.||+++++..+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 467999999999999999999999999999998765421 014556666677778899999999875411
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccC-cCC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 317 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~-~p~ 317 (497)
.+.+.+. ...+|.||+|+|. .|.
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 1333332 3568999999997 564
No 305
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.00 E-value=2.1e-05 Score=81.45 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
+||+|||||+||+.||..+++.|. +|+|+++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---CEEEEeccc
Confidence 589999999999999999999987 899999874
No 306
>PRK10262 thioredoxin reductase; Provisional
Probab=98.00 E-value=9.2e-05 Score=72.47 Aligned_cols=100 Identities=19% Similarity=0.283 Sum_probs=69.8
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC---cch--------h----hccCHHHHHHHHHHHHHCCcEEEcCC
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HLL--------Q----RLFTPSLAQRYEQLYQQNGVKFVKGA 279 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~---~~~--------~----~~~~~~~~~~~~~~l~~~GV~i~~~~ 279 (497)
..++|+|||+|+.|+.+|..++++|.++++++... .+. + ....+.+.+.+.+.....++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 46789999999999999999999999999886321 100 0 1122345667777777788887765
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917 280 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 318 (497)
Q Consensus 280 ~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~ 318 (497)
.+..++.. ++.. .+..++ ..+.+|.||+|+|..|+.
T Consensus 84 ~v~~v~~~-~~~~-~v~~~~-~~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 HINKVDLQ-NRPF-RLTGDS-GEYTCDALIIATGASARY 119 (321)
T ss_pred EEEEEEec-CCeE-EEEecC-CEEEECEEEECCCCCCCC
Confidence 46667643 3322 233333 368999999999999864
No 307
>PRK08244 hypothetical protein; Provisional
Probab=97.99 E-value=6.9e-05 Score=77.96 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=73.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 254 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------ 254 (497)
..|+|||+|+.|+-+|..|++.|.+|+|+++.+.....
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999976321100
Q ss_pred -c------------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeccCcCC
Q 010917 255 -L------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT 317 (497)
Q Consensus 255 -~------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~~p~ 317 (497)
+ + -..+.+.+.+.+++.|++++.++++++++..+++....+...+| +++.+|+||.|.|....
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 0 0 01234556666778899999999999998654443222333356 47999999999998764
No 308
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00038 Score=66.88 Aligned_cols=98 Identities=22% Similarity=0.370 Sum_probs=73.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcE-EEEecC---------------CcchhhccCHHHHHHHHHHHHHCCcEEEcCCe
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDT-TIIFPE---------------NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 280 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~V-tlv~~~---------------~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~ 280 (497)
-.|+|||+|+.|+-.|-.+.+.+.++ .+++.. +.+......+++.+.+++..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 36999999999999999999999884 444432 11111134567778888888888999988 67
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917 281 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 318 (497)
Q Consensus 281 v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~ 318 (497)
+.+++..++ ...|.+.+++ +.++.||+|+|..+..
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence 788875432 4467888887 9999999999998753
No 309
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.98 E-value=5.9e-06 Score=73.17 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
..+||+|||||||||+||+.|++.|+ +|+++|++...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCC
Confidence 35899999999999999999999998 89999998653
No 310
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.98 E-value=9.1e-05 Score=74.49 Aligned_cols=99 Identities=30% Similarity=0.375 Sum_probs=76.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC-cchhh----------------------------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQR---------------------------------------- 254 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~~---------------------------------------- 254 (497)
..+|+|||||+.|+-+|..|++.|.+|+|+++.+ .+.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 3579999999999999999999999999999871 11110
Q ss_pred -------------------ccCHHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEecc
Q 010917 255 -------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIG 313 (497)
Q Consensus 255 -------------------~~~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~~D~vv~a~G 313 (497)
..-..+.+.+.+.+.+.+ |+++.+++|+.++.++ +.+. ++++ +|+++.||+||-|-|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCC
Confidence 001124555666676665 9999999999999764 4444 7777 999999999999999
Q ss_pred CcC
Q 010917 314 AKP 316 (497)
Q Consensus 314 ~~p 316 (497)
...
T Consensus 160 ~~S 162 (387)
T COG0654 160 ANS 162 (387)
T ss_pred Cch
Confidence 754
No 311
>PRK12831 putative oxidoreductase; Provisional
Probab=97.96 E-value=2.3e-05 Score=80.47 Aligned_cols=93 Identities=24% Similarity=0.313 Sum_probs=68.0
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------h-ccC-HHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLE 285 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~-~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~ 285 (497)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . .++ .++.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 578999999999999999999999999999997654311 0 012 22555666778899999999985521
Q ss_pred eCCCCcEEEEEeCCC-cEEEcCEEEEeccC-cCC
Q 010917 286 AGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT 317 (497)
Q Consensus 286 ~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~-~p~ 317 (497)
.+.+.+. +.+.+|.||+|+|. .|.
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1223332 34569999999998 464
No 312
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.96 E-value=0.00012 Score=74.67 Aligned_cols=107 Identities=21% Similarity=0.372 Sum_probs=76.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------------ccC-------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------LFT------------------------- 257 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------~~~------------------------- 257 (497)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+... .++
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 46999999999999999999999999999976432100 000
Q ss_pred ----------------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 258 ----------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 258 ----------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
..+-+.+.+..++.|++++.+++|+++... ++.+..+. .++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 011234555667789999999999998754 45554444 567789999999999985
Q ss_pred CCCcchhhcCCc
Q 010917 316 PTVSPFERVGLN 327 (497)
Q Consensus 316 p~~~~~~~~gl~ 327 (497)
. .+.+.+++.
T Consensus 164 s--~l~~~lgl~ 173 (428)
T PRK10157 164 S--ILAEKLGMA 173 (428)
T ss_pred H--HHHHHcCCC
Confidence 3 455555543
No 313
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.96 E-value=9.9e-05 Score=74.52 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=73.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------------cc-----
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF----- 256 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------~~----- 256 (497)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.+... ..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 568999999999999999999999999999987432100 00
Q ss_pred --------C----------------HHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 010917 257 --------T----------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 311 (497)
Q Consensus 257 --------~----------------~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a 311 (497)
+ .++.+.+.+.+.+. +++++.++++++++..++ .+ .+.+.+|+++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-GV-TVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-ce-EEEEcCCCEEecCEEEEC
Confidence 0 01223344444445 499999999999985433 33 477788889999999999
Q ss_pred ccCcCC
Q 010917 312 IGAKPT 317 (497)
Q Consensus 312 ~G~~p~ 317 (497)
.|....
T Consensus 162 dG~~S~ 167 (396)
T PRK08163 162 DGVKSV 167 (396)
T ss_pred CCcChH
Confidence 998754
No 314
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.95 E-value=2.8e-05 Score=79.98 Aligned_cols=92 Identities=17% Similarity=0.321 Sum_probs=69.8
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++.++.....+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 468999999999999999999999999999998875421 1135566666778889999999999866321
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
+.+.+ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999999875
No 315
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.94 E-value=3e-05 Score=79.25 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=67.0
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHh--CCCcEEEEecCCcchhhc---------cCHHHHHHHHHHHHHCCcEEEcCCeEEE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN 283 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~~~~~---------~~~~~~~~~~~~l~~~GV~i~~~~~v~~ 283 (497)
.+++|+|||+|+.|+.+|..|++ .|++|+|+++.+.+.... ....+...+.+.+++.+|+++.+..+-.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46899999999999999999987 799999999998654210 1123344566677888999998765421
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 284 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 284 i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
.+.+++-. ..+|.||+|+|..+.
T Consensus 105 ----------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 ----------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence 23333332 469999999999764
No 316
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.94 E-value=9.9e-05 Score=77.68 Aligned_cols=98 Identities=29% Similarity=0.416 Sum_probs=73.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh------------h---ccCHHHHHHHHHHHHHCCcEEEcCCeE
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------R---LFTPSLAQRYEQLYQQNGVKFVKGASI 281 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------~---~~~~~~~~~~~~~l~~~GV~i~~~~~v 281 (497)
-.|+|||||+.|+.+|..|++.|.+|+++++.. +.. . .....+.+.+.+.+++.|++++ +..+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V 82 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV 82 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence 469999999999999999999999999999753 210 0 0124566777778888999986 5678
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCc
Q 010917 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 319 (497)
Q Consensus 282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~ 319 (497)
..++.. +....+.+.++ .+.+|.+|+|+|.+|...
T Consensus 83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 888753 22334556555 589999999999988643
No 317
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.93 E-value=4.7e-05 Score=81.16 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY 97 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~ 97 (497)
+.+.+|+||||||+||++|..|++. |. +++|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence 3468999999999999999999995 88 8999999863
No 318
>PRK07588 hypothetical protein; Provisional
Probab=97.93 E-value=0.00011 Score=74.12 Aligned_cols=98 Identities=23% Similarity=0.250 Sum_probs=71.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------- 254 (497)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 6999999999999999999999999999876432100
Q ss_pred -ccC-----------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 255 -LFT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 255 -~~~-----------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
.++ ..+...+.+.+ ..|+++++++++++++..++ .+ .+.+++|+++.+|.||-|-|...
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRD-GV-RVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCC-eE-EEEECCCCEEEeCEEEECCCCCc
Confidence 000 00112222222 34799999999999986533 33 47888999999999999999865
Q ss_pred CC
Q 010917 317 TV 318 (497)
Q Consensus 317 ~~ 318 (497)
..
T Consensus 159 ~v 160 (391)
T PRK07588 159 HV 160 (391)
T ss_pred cc
Confidence 43
No 319
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.92 E-value=5.5e-05 Score=79.92 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEeccCcC-CCcchhh
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKP-TVSPFER 323 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~~-D~vv~a~G~~p-~~~~~~~ 323 (497)
+..+...+.+.+++.||+++.++.++++..+ ++++.+|...+ ++ ++.+ +.||+|+|--. |.+++++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 4567777888899999999999999998753 67777776643 33 4776 68999988643 4444444
No 320
>PLN02546 glutathione reductase
Probab=97.92 E-value=3.6e-05 Score=80.47 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
..++|+|||||+.|+..|..|++.|. +|+|+++.+... +.+ . ..+ .....+.
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il---~~~--------d---~~~-----------~~~l~~~ 302 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVL---RGF--------D---EEV-----------RDFVAEQ 302 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccc---ccc--------C---HHH-----------HHHHHHH
Confidence 35799999999999999999999876 899999875421 000 0 000 1234566
Q ss_pred HHHcCcEEEeCCcEEEEecC-CC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917 139 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 139 ~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
+++.||++++++.+..+... .. .+.+.+++...+|.+++|+|..|..
T Consensus 303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 78899999999999888642 22 2344455445589999999988764
No 321
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.92 E-value=3.8e-05 Score=80.67 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=30.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
..||||||||.||++||..+ +.|. +|+|+||.+
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~---~VilleK~~ 39 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGK---NVVIVSKGL 39 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCC---CEEEEEccC
Confidence 47999999999999999999 8876 899999975
No 322
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.91 E-value=0.00014 Score=73.80 Aligned_cols=99 Identities=18% Similarity=0.330 Sum_probs=73.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc----------ch-------h-------------hc-----------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------LL-------Q-------------RL----------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~----------~~-------~-------------~~----------- 255 (497)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+. .. + ..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999997641 00 0 00
Q ss_pred ------------cC---------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 010917 256 ------------FT---------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308 (497)
Q Consensus 256 ------------~~---------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~v 308 (497)
++ ..+.+.+.+.+++.|++++.++++.+++..+++ + .+++.+|+++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEE
Confidence 00 012223445566779999999999999865443 3 477888989999999
Q ss_pred EEeccCcCC
Q 010917 309 VIGIGAKPT 317 (497)
Q Consensus 309 v~a~G~~p~ 317 (497)
|.|.|....
T Consensus 161 VgAdG~~S~ 169 (405)
T PRK05714 161 VAADGANSA 169 (405)
T ss_pred EEecCCCch
Confidence 999998653
No 323
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.91 E-value=2.9e-05 Score=82.29 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=68.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH-
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW- 138 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (497)
.++|+|||||+.|+..|..|++.|. +||||++.+... +.+ +. ++ .....+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll---~~~--------d~---ei-----------s~~l~~~l 363 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLL---PLL--------DA---DV-----------AKYFERVF 363 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccc---ccC--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999986 899999876521 000 00 00 0122333
Q ss_pred HHHcCcEEEeCCcEEEEecCCC----EEEEC-------CC--------cEEEeccEEeccCCCCCc
Q 010917 139 YKEKGIEMIYQDPVTSIDIEKQ----TLITN-------SG--------KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 139 ~~~~~v~~~~~~~v~~i~~~~~----~v~~~-------~g--------~~i~~d~lvlAtG~~~~~ 185 (497)
+++.||++++++.|..++.... .+.+. ++ +++.+|.|++|||..|..
T Consensus 364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 3567999999999999976432 23222 11 269999999999988763
No 324
>PRK06184 hypothetical protein; Provisional
Probab=97.90 E-value=0.00014 Score=75.83 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=73.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------------c-------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------~------- 255 (497)
.+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+... .
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 46999999999999999999999999999986322100 0
Q ss_pred ----------------------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEE
Q 010917 256 ----------------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV 309 (497)
Q Consensus 256 ----------------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~~D~vv 309 (497)
+ -..+.+.+.+.+.+.|++++.++++++++.++++ + .+++ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence 0 0112345666677889999999999999866444 2 2334 556789999999
Q ss_pred EeccCcC
Q 010917 310 IGIGAKP 316 (497)
Q Consensus 310 ~a~G~~p 316 (497)
.|.|...
T Consensus 162 gADG~~S 168 (502)
T PRK06184 162 GADGGRS 168 (502)
T ss_pred ECCCCch
Confidence 9999764
No 325
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.89 E-value=0.00014 Score=73.69 Aligned_cols=106 Identities=25% Similarity=0.375 Sum_probs=78.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC--CcEEEEecCCcchh------------------h-----------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ------------------R----------------------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~------------------~----------------------- 254 (497)
+|+|||+|+.|+-+|..|++.| .+|+++++.+...+ .
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999995 89999997632100 0
Q ss_pred ----------c---------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 010917 255 ----------L---------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309 (497)
Q Consensus 255 ----------~---------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv 309 (497)
. ....+.+.+.+.+.+.|++++.++++++++..++ .+ .+++++|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-GV-TVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EE-EEEECCCCEEEeCEEE
Confidence 0 0012345566667778999999999999986433 33 5777888899999999
Q ss_pred EeccCcCCCcchhhcCCc
Q 010917 310 IGIGAKPTVSPFERVGLN 327 (497)
Q Consensus 310 ~a~G~~p~~~~~~~~gl~ 327 (497)
.|.|.... +.+.+++.
T Consensus 161 ~AdG~~S~--vr~~~g~~ 176 (403)
T PRK07333 161 AADGARSK--LRELAGIK 176 (403)
T ss_pred EcCCCChH--HHHHcCCC
Confidence 99998764 44445544
No 326
>PRK07190 hypothetical protein; Provisional
Probab=97.89 E-value=0.00022 Score=73.68 Aligned_cols=107 Identities=18% Similarity=0.307 Sum_probs=77.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh----------------------------------------hc-
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------RL- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------------------~~- 255 (497)
..|+|||+|++|+-+|..|++.|.+|.++++.+.+.. ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4799999999999999999999999999987732100 00
Q ss_pred ---------cC------------HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 256 ---------FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 256 ---------~~------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
.. ..+...+.+.+++.|++++.++++++++.++++. .+.+.+|+++.++.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence 00 0122344556678899999999999998765442 345677889999999999998
Q ss_pred cCCCcchhhcCCc
Q 010917 315 KPTVSPFERVGLN 327 (497)
Q Consensus 315 ~p~~~~~~~~gl~ 327 (497)
+.. .-+.+|+.
T Consensus 164 ~S~--vR~~lgi~ 174 (487)
T PRK07190 164 RSF--VRNHFNVP 174 (487)
T ss_pred CHH--HHHHcCCC
Confidence 642 23344554
No 327
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.89 E-value=5.1e-05 Score=78.64 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=64.7
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 294 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~ 294 (497)
.+++|+|+|+|.+|+++|..|.++|.+|+++++.+. .....+.+.+++.||+++.+..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 478999999999999999999999999999986642 223345566888999998775432
Q ss_pred EEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917 295 VKLEDGSTIDADTIVIGIGAKPTVSPF 321 (497)
Q Consensus 295 v~~~~g~~i~~D~vv~a~G~~p~~~~~ 321 (497)
....+|.||+++|..|+.+++
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHH
Confidence 124589999999999998874
No 328
>PRK05868 hypothetical protein; Validated
Probab=97.86 E-value=0.00016 Score=72.24 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=71.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 254 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------ 254 (497)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999977432110
Q ss_pred --ccC--H-H-----------HHHHHHHHHH---HCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 255 --LFT--P-S-----------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 255 --~~~--~-~-----------~~~~~~~~l~---~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
... . . ....+.+.|. ..|+++++++++++++.+ ++.+ .+++.+|+++.+|+||-|-|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCCC
Confidence 000 0 0 0112223322 368999999999999754 3333 5788999999999999999976
Q ss_pred CC
Q 010917 316 PT 317 (497)
Q Consensus 316 p~ 317 (497)
..
T Consensus 160 S~ 161 (372)
T PRK05868 160 SN 161 (372)
T ss_pred ch
Confidence 54
No 329
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.86 E-value=4.6e-05 Score=78.74 Aligned_cols=90 Identities=24% Similarity=0.320 Sum_probs=68.3
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-------hh-ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. +. .++.++.....+.+++.||+++.++.+.. +
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence 45799999999999999999999999999999887542 11 13456666666778899999999987631 1
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
+. .++....+|.|++|+|..
T Consensus 220 --------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 --------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------cC-HHHHHhhCCEEEEccCCC
Confidence 10 111235799999999997
No 330
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.85 E-value=4.7e-05 Score=83.17 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=69.3
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.....+.+++.||++++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 3679999999999999999999999999999986543210 12445666666778899999999875411
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccC-cCC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 317 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~-~p~ 317 (497)
.+.+++.....+|.||+|+|. .|.
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 233444445679999999998 465
No 331
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.84 E-value=0.00017 Score=74.90 Aligned_cols=96 Identities=24% Similarity=0.368 Sum_probs=69.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC-cchh-------------------hcc--------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ-------------------RLF-------------------- 256 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~~~-------------------~~~-------------------- 256 (497)
-.|+|||||+.|+++|..+++.|.+|.++++.. .+.. ..+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 369999999999999999999999999998862 1100 000
Q ss_pred -------------CH-HHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 257 -------------TP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 257 -------------~~-~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
+. .+...+.+.+++. |++++ ...+.++... ++++.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 0123344444544 88886 4467777643 66778899999999999999999994
No 332
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.84 E-value=0.0002 Score=71.96 Aligned_cols=97 Identities=22% Similarity=0.340 Sum_probs=72.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcchhh--------cc--------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------LF-------------------------------- 256 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~--------~~-------------------------------- 256 (497)
.|+|||+|+.|+-+|..|++.| .+|+++++.+.+... .+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 999999876422100 00
Q ss_pred -----------------------CHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEec
Q 010917 257 -----------------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 312 (497)
Q Consensus 257 -----------------------~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~ 312 (497)
-..+.+.+.+.+.+ .|++++.++++++++..+++ + .+++++|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEec
Confidence 01123344455555 49999999999999865443 3 4677888899999999999
Q ss_pred cCcC
Q 010917 313 GAKP 316 (497)
Q Consensus 313 G~~p 316 (497)
|...
T Consensus 159 G~~S 162 (382)
T TIGR01984 159 GANS 162 (382)
T ss_pred CCCh
Confidence 9764
No 333
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.84 E-value=0.00027 Score=73.40 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=82.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc----------------------------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL---------------------------------------- 255 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~---------------------------------------- 255 (497)
.|+|+|||+|.+|+-.+..|.+.|.+++++++.+.+..-.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 3799999999999999999999999999999885432210
Q ss_pred -cCHHHHHHHHHHHHHCCc--EEEcCCeEEEEEeCCCC---cEEEEEeC-CCc--EEEcCEEEEeccCc--CCCcchhhc
Q 010917 256 -FTPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DGS--TIDADTIVIGIGAK--PTVSPFERV 324 (497)
Q Consensus 256 -~~~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~~---~v~~v~~~-~g~--~i~~D~vv~a~G~~--p~~~~~~~~ 324 (497)
-..++.++++...+..++ .+.++++|.+++..++. ..-.|++. +|+ +..+|.||+|+|.- |+.+.-.--
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~ 160 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP 160 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence 014577888888887776 58899999999875442 12234454 342 45689999999974 443320011
Q ss_pred CCcccCCCEEecCCCCC----CCCcEEEecc
Q 010917 325 GLNSSVGGIQVDGQFRT----RMPGIFAIGD 351 (497)
Q Consensus 325 gl~~~~g~i~vd~~~~t----~~~~iya~GD 351 (497)
|++.-.|.+.--..++. ...+|-++|-
T Consensus 161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~ 191 (531)
T PF00743_consen 161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGG 191 (531)
T ss_dssp TGGGHCSEEEEGGG--TGGGGTTSEEEEESS
T ss_pred hhhcCCeeEEccccCcChhhcCCCEEEEEeC
Confidence 33322344443333433 3456777774
No 334
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.84 E-value=9e-05 Score=68.77 Aligned_cols=66 Identities=9% Similarity=0.121 Sum_probs=46.4
Q ss_pred HHHHHHHHCCcEEEcCCeEEEEEeCCCC---cEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCCccc
Q 010917 263 RYEQLYQQNGVKFVKGASIKNLEAGSDG---RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 329 (497)
Q Consensus 263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~---~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~ 329 (497)
.+-+.++..|-+++++.+++.+..+.++ .-..|....++++.+..+|-|+|...+ ...+.++++.+
T Consensus 201 s~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d 269 (453)
T KOG2665|consen 201 SFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD 269 (453)
T ss_pred HHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence 3444478889999999999998866543 222344445688999999999999865 34455555543
No 335
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.83 E-value=4.7e-06 Score=80.33 Aligned_cols=100 Identities=24% Similarity=0.309 Sum_probs=71.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHcC-----------CCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHG-----------MADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 129 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g-----------~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 129 (497)
-++|||||||.|+..|.+|+..- ..+.+|||+|..++. |...++ ++
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i-----------L~mFdk---rl--------- 275 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI-----------LNMFDK---RL--------- 275 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH-----------HHHHHH---HH---------
Confidence 47999999999999999988531 124579999988753 110000 11
Q ss_pred CCCCCCHhHHHHcCcEEEeCCcEEEEecCCCEEEECCC--cEEEeccEEeccCCCCCc
Q 010917 130 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASR 185 (497)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lvlAtG~~~~~ 185 (497)
..+.++.+.+.+|++.+++.|..++.+.-.+...+| ++++|--||.|||..+++
T Consensus 276 --~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 276 --VEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred --HHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence 134466778889999999889888765544444444 479999999999998874
No 336
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.83 E-value=0.00018 Score=73.08 Aligned_cols=100 Identities=23% Similarity=0.337 Sum_probs=69.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch----hh--cc---------------------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR--LF--------------------------------- 256 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~~--~~--------------------------------- 256 (497)
..+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+. .+ .+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3579999999999999999999999999999764321 00 00
Q ss_pred ----------------------CHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCC--C-cEEEcCEEEE
Q 010917 257 ----------------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED--G-STIDADTIVI 310 (497)
Q Consensus 257 ----------------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~--g-~~i~~D~vv~ 310 (497)
...+.+.+.+.+.+. ||+++.++++++++..+++ + .+++.+ + .++.+|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEE
Confidence 011222333434443 7999999999999765443 2 355543 2 3699999999
Q ss_pred eccCcCC
Q 010917 311 GIGAKPT 317 (497)
Q Consensus 311 a~G~~p~ 317 (497)
|.|....
T Consensus 176 ADG~~S~ 182 (415)
T PRK07364 176 ADGARSP 182 (415)
T ss_pred eCCCCch
Confidence 9998764
No 337
>PRK09126 hypothetical protein; Provisional
Probab=97.82 E-value=0.0002 Score=72.21 Aligned_cols=99 Identities=23% Similarity=0.360 Sum_probs=71.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-------hh-----------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR----------------------------------- 254 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~~----------------------------------- 254 (497)
-+|+|||||+.|+-+|..|++.|.+|+|+++.+.+. .+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999864310 00
Q ss_pred --------ccCH---------------HHHHHHHHHH-HHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917 255 --------LFTP---------------SLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310 (497)
Q Consensus 255 --------~~~~---------------~~~~~~~~~l-~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~ 310 (497)
.++. .+.+.+.+.+ +..|++++.++++++++..++ .+ .+.+++|+++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~~-~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-GA-QVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-eE-EEEEcCCCEEEeCEEEE
Confidence 0000 0111222222 346899999999999986533 33 57778899999999999
Q ss_pred eccCcCC
Q 010917 311 GIGAKPT 317 (497)
Q Consensus 311 a~G~~p~ 317 (497)
|.|..+.
T Consensus 162 AdG~~S~ 168 (392)
T PRK09126 162 ADSRFSA 168 (392)
T ss_pred eCCCCch
Confidence 9998764
No 338
>PLN02697 lycopene epsilon cyclase
Probab=97.82 E-value=0.0002 Score=74.09 Aligned_cols=98 Identities=23% Similarity=0.376 Sum_probs=71.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc-----------------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~----------------------------------------- 255 (497)
-.|+|||+|+.|+.+|..|++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 369999999999999999999999999998642211000
Q ss_pred c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 256 F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 256 ~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
+ ...+.+.+.+.+.+.|+++ .+.+|++++..+++ +..+.+.+|.++.++.||.|.|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 0122344555567789998 56789998764333 3335667888999999999999876
No 339
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.82 E-value=9.6e-05 Score=76.60 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
..++|+|||+|++|+++|..|+++|+ +|+++|+.+... .....+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~ 59 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAI 59 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHH
Confidence 35689999999999999999999998 799998764210 0112355
Q ss_pred HHHcCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCc
Q 010917 139 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 139 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
+++.|++++++..+. . ...+|.+|+++|..|..
T Consensus 60 l~~~gv~~~~~~~~~-~-------------~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 60 LEALGATVRLGPGPT-L-------------PEDTDLVVTSPGWRPDA 92 (480)
T ss_pred HHHcCCEEEECCCcc-c-------------cCCCCEEEECCCcCCCC
Confidence 778899998875442 0 14589999999988763
No 340
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.82 E-value=7.2e-05 Score=82.27 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=65.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeC
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 287 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~ 287 (497)
+++|+|||||+.|+.+|..|++.|.+|+|+++.+.+... ..+.+......+.+.+.||+++++....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 578999999999999999999999999999987654221 1234444555567788899998874211
Q ss_pred CCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 288 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 288 ~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
+.+.+.+...+|.||+|+|..+.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCC
Confidence 12223334668999999999754
No 341
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=2.4e-05 Score=80.19 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=36.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
..++++|+|||||+|||+||++|.+.|+ +|+|+|..+...
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvG 51 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVG 51 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcC
Confidence 5667899999999999999999999999 799999988654
No 342
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.80 E-value=0.00025 Score=71.39 Aligned_cols=98 Identities=27% Similarity=0.355 Sum_probs=73.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh---------------------hc-c------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------RL-F------------------ 256 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~~-~------------------ 256 (497)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .. +
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4699999999999999999999999999997754311 00 0
Q ss_pred ------------------------CHHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 010917 257 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 311 (497)
Q Consensus 257 ------------------------~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a 311 (497)
...+.+.+.+.+++.| ++++ +.++++++..++ .+ .+++.+|+++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD-AA-TLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-eE-EEEECCCCEEEeeEEEEe
Confidence 1123344556667777 9999 888999875433 33 477888888999999999
Q ss_pred ccCcCC
Q 010917 312 IGAKPT 317 (497)
Q Consensus 312 ~G~~p~ 317 (497)
.|....
T Consensus 163 dG~~S~ 168 (388)
T PRK07608 163 DGAHSW 168 (388)
T ss_pred CCCCch
Confidence 998753
No 343
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.80 E-value=9.5e-06 Score=88.44 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.4
Q ss_pred cEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 010917 62 EFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY 97 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~--g~~~~~V~lie~~~~ 97 (497)
+|+|||||||||++|..|++. |+ +|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~---~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAH---EVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCC---eEEEEecCCC
Confidence 799999999999999999998 56 8999999874
No 344
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.80 E-value=0.00026 Score=71.08 Aligned_cols=97 Identities=27% Similarity=0.348 Sum_probs=72.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------h--ccC-------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--LFT------------------------------- 257 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~--~~~------------------------------- 257 (497)
.|+|||+|+.|+-+|..|++.|.+|+|+++.+.+.. + .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 489999999999999999999999999998853200 0 000
Q ss_pred -------------------------HHHHHHHHHHHHHCC-cEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEe
Q 010917 258 -------------------------PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 311 (497)
Q Consensus 258 -------------------------~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a 311 (497)
..+.+.+.+.+.+.| ++++.+++|++++..+ +.+ .+.+++|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEECCCCEEEeeEEEEe
Confidence 112233445556666 9999999999998653 333 477889989999999999
Q ss_pred ccCcC
Q 010917 312 IGAKP 316 (497)
Q Consensus 312 ~G~~p 316 (497)
.|...
T Consensus 159 dG~~S 163 (385)
T TIGR01988 159 DGANS 163 (385)
T ss_pred CCCCC
Confidence 99865
No 345
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.80 E-value=6.3e-05 Score=80.01 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...+||||||||..|.++|+.|+++|+ +|+|||+++
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl---~V~LvE~~d 104 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGL---RVGLVERED 104 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCC---EEEEEeccc
Confidence 345899999999999999999999998 899999985
No 346
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.79 E-value=0.00018 Score=71.15 Aligned_cols=100 Identities=29% Similarity=0.393 Sum_probs=71.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------- 254 (497)
+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 5999999999999999999999999999987221100
Q ss_pred -------------------------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CC--cEEEcC
Q 010917 255 -------------------------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDAD 306 (497)
Q Consensus 255 -------------------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~~D 306 (497)
..-..+.+.+.+.+++.|++++.++++..++.+.++....+... +| +++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 00124566777888889999999999999886654432233333 34 369999
Q ss_pred EEEEeccCcCC
Q 010917 307 TIVIGIGAKPT 317 (497)
Q Consensus 307 ~vv~a~G~~p~ 317 (497)
+||-|-|....
T Consensus 163 lvVgADG~~S~ 173 (356)
T PF01494_consen 163 LVVGADGAHSK 173 (356)
T ss_dssp EEEE-SGTT-H
T ss_pred eeecccCcccc
Confidence 99999998753
No 347
>PRK08013 oxidoreductase; Provisional
Probab=97.79 E-value=0.00026 Score=71.62 Aligned_cols=99 Identities=25% Similarity=0.326 Sum_probs=72.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------h--ccC-----------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------R--LFT----------------------------- 257 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~--~~~----------------------------- 257 (497)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. + .+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 4799999999999999999999999999997643110 0 000
Q ss_pred ---------------------------HHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 010917 258 ---------------------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 309 (497)
Q Consensus 258 ---------------------------~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv 309 (497)
..+.+.+.+.+.+. ||+++.++++++++.++++ ..+++.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 01122233334443 7999999999999765443 35677899999999999
Q ss_pred EeccCcCC
Q 010917 310 IGIGAKPT 317 (497)
Q Consensus 310 ~a~G~~p~ 317 (497)
-|-|....
T Consensus 162 gADG~~S~ 169 (400)
T PRK08013 162 GADGANSW 169 (400)
T ss_pred EeCCCCcH
Confidence 99998753
No 348
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.78 E-value=0.00014 Score=73.38 Aligned_cols=92 Identities=12% Similarity=0.174 Sum_probs=62.1
Q ss_pred cCCeEEEEcCCHHHHHHHHHH-HhCCCcEEEEecCCcchhhc---c------CHHHHHHHHHHHHHCCcEEEcCCeEEEE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAA-VGWKLDTTIIFPENHLLQRL---F------TPSLAQRYEQLYQQNGVKFVKGASIKNL 284 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l-~~~g~~Vtlv~~~~~~~~~~---~------~~~~~~~~~~~l~~~GV~i~~~~~v~~i 284 (497)
.+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+..-. . -..+...+...+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 578999999999999999976 46799999999998764210 1 123445555556678888875543311
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
.+..++= ...+|.||+|+|..+.
T Consensus 117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 1111111 2368999999998853
No 349
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.77 E-value=0.00027 Score=71.31 Aligned_cols=108 Identities=18% Similarity=0.274 Sum_probs=79.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------c-----------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------L----------------------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------~----------------------- 255 (497)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+..+ .
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 36999999999999999999999999999987322110 0
Q ss_pred --------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchhhcCC
Q 010917 256 --------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 326 (497)
Q Consensus 256 --------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~~~gl 326 (497)
+ -..+-+++.+..++.|++++.++++..+..++++.+..+ ..++.++.++.||.|.|... .+.+.+++
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s--~l~~~lg~ 160 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNS--ALARKLGL 160 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcch--HHHHHhCC
Confidence 0 112345577778889999999999999987655655443 34447899999999999765 34444444
Q ss_pred c
Q 010917 327 N 327 (497)
Q Consensus 327 ~ 327 (497)
.
T Consensus 161 ~ 161 (396)
T COG0644 161 K 161 (396)
T ss_pred C
Confidence 4
No 350
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.76 E-value=0.00033 Score=70.64 Aligned_cols=99 Identities=22% Similarity=0.337 Sum_probs=72.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch---------------h-------------hc-------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------Q-------------RL------------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------~-------------~~------------- 255 (497)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+... + ..
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET 85 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence 479999999999999999999999999998764100 0 00
Q ss_pred ---------c---------------CHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917 256 ---------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310 (497)
Q Consensus 256 ---------~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~ 310 (497)
+ ...+.+.+.+.+++. |++++.++++++++..+++ ..+.+.+|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIG 163 (391)
T ss_pred EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEE
Confidence 0 011223344445555 9999999999999755333 356778888999999999
Q ss_pred eccCcCC
Q 010917 311 GIGAKPT 317 (497)
Q Consensus 311 a~G~~p~ 317 (497)
|.|....
T Consensus 164 AdG~~S~ 170 (391)
T PRK08020 164 ADGANSQ 170 (391)
T ss_pred eCCCCch
Confidence 9998764
No 351
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.76 E-value=0.00045 Score=65.21 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=40.0
Q ss_pred cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 256 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 256 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
.......++++.-..-+-++.+++.|..+..-.+|. .+...+|+.-.+|.||+|+-.
T Consensus 215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv--~l~~~~G~s~rFD~vViAth~ 271 (447)
T COG2907 215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGV--VLVNADGESRRFDAVVIATHP 271 (447)
T ss_pred cccchHHHHHHHhccccceeecCCceeeeeeCCCce--EEecCCCCccccceeeeecCh
Confidence 344445566555444444588999999998777774 355567888899999999754
No 352
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.75 E-value=0.0003 Score=74.04 Aligned_cols=99 Identities=24% Similarity=0.308 Sum_probs=71.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----------------------------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 254 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------------- 254 (497)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 457999999999999999999999999999977321100
Q ss_pred ---ccC-----------------HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEE
Q 010917 255 ---LFT-----------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV 309 (497)
Q Consensus 255 ---~~~-----------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~~D~vv 309 (497)
.++ +.+.+.+.+.+.+ .|++++.++++++++.++++. .++++ +| +++.+|+||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence 000 1122334444555 489999999999998765553 34443 56 479999999
Q ss_pred EeccCcC
Q 010917 310 IGIGAKP 316 (497)
Q Consensus 310 ~a~G~~p 316 (497)
-|.|...
T Consensus 168 gADG~~S 174 (538)
T PRK06183 168 GCDGANS 174 (538)
T ss_pred ecCCCch
Confidence 9999754
No 353
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.75 E-value=7.7e-05 Score=79.82 Aligned_cols=92 Identities=18% Similarity=0.334 Sum_probs=70.0
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++..+.....+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 478999999999999999999999999999998876431 124566666667888999999999986521
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
+ +.+.+ ....+|.|++|+|..+.
T Consensus 386 --~-----~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --D-----ITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 0 11211 13468999999998653
No 354
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.75 E-value=8.8e-05 Score=82.84 Aligned_cols=93 Identities=25% Similarity=0.310 Sum_probs=68.7
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+.+|..|++.|.+|+|+++.+.+... ..+.++.....+.+++.||++++++.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~--- 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK--- 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC---
Confidence 3579999999999999999999999999999987654321 13566777777889999999999964411
Q ss_pred CCCCcEEEEEeCCC-cEEEcCEEEEeccCc-CC
Q 010917 287 GSDGRVAAVKLEDG-STIDADTIVIGIGAK-PT 317 (497)
Q Consensus 287 ~~~~~v~~v~~~~g-~~i~~D~vv~a~G~~-p~ 317 (497)
.+...+- ....+|.||+|+|.. |.
T Consensus 506 -------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 -------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred -------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 1111111 124589999999984 54
No 355
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=2.8e-05 Score=77.59 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=29.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
.+||+|||||.||..||...++.|. ++.|+.-+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~ 37 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNL 37 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCC---eEEEEEcCC
Confidence 4899999999999999999999997 677776654
No 356
>PRK06753 hypothetical protein; Provisional
Probab=97.74 E-value=0.00024 Score=71.06 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=69.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----ccCHH----------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPS---------------------------------- 259 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----~~~~~---------------------------------- 259 (497)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+... .+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6999999999999999999999999999987542110 00000
Q ss_pred --------------HHHHHHHHHHH--CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 260 --------------LAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 260 --------------~~~~~~~~l~~--~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
-...+.+.|.+ .+.++++++++++++.. ++.+ .+++++|+++.+|.||-|-|....
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchH
Confidence 01112222322 24678899999999854 3333 577889999999999999997653
No 357
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.74 E-value=0.00033 Score=70.44 Aligned_cols=100 Identities=23% Similarity=0.316 Sum_probs=71.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC--cch---h---h--ccCH----------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL---Q---R--LFTP---------------------------- 258 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~--~~~---~---~--~~~~---------------------------- 258 (497)
.+|+|||||+.|+-+|..|++.|.+|+++++.+ .+. . + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 369999999999999999999999999999653 100 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917 259 ---------------------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310 (497)
Q Consensus 259 ---------------------------~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~ 310 (497)
.+...+.+.+++ .|++++.++++++++.++++ + .+++++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEE
Confidence 001112222233 37999999999999865443 3 57888999999999999
Q ss_pred eccCcCCC
Q 010917 311 GIGAKPTV 318 (497)
Q Consensus 311 a~G~~p~~ 318 (497)
|.|.....
T Consensus 162 ADG~~S~v 169 (384)
T PRK08849 162 ADGANSQV 169 (384)
T ss_pred ecCCCchh
Confidence 99997653
No 358
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.74 E-value=0.00038 Score=72.31 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=71.0
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch------------------hh-------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR------------------------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------~~------------------------- 254 (497)
.|+|||+|..|+++|..+++.|.+|.++++..... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998652110 00
Q ss_pred ----------ccCH-HHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 255 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 255 ----------~~~~-~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
.+|+ .+...+++.+++. |+.++.+ .++++...+++.+.+|.+.+|..+.||.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0000 1123455555665 7888766 5666654335678889999999999999999999874
No 359
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.74 E-value=9.1e-05 Score=76.43 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=67.9
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .++.++.....+.+++.||+++.++.+.. +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence 4679999999999999999999999999999988765311 13445556666778899999999986531 1
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
+.. +.....+|.||+|+|..+
T Consensus 220 --------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 --------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred --------CCH-HHHHhhCCEEEEecCCCC
Confidence 000 111357999999999973
No 360
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.73 E-value=0.00037 Score=73.50 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=72.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------------c------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------ 255 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------~------ 255 (497)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 357999999999999999999999999999877422100 0
Q ss_pred -------------------c-CHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEecc
Q 010917 256 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG 313 (497)
Q Consensus 256 -------------------~-~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~~D~vv~a~G 313 (497)
. ...+.+.+.+.+.+. ++++++++++++++.++++....+...+++ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 001223444555554 799999999999987644433334444554 699999999999
Q ss_pred CcCC
Q 010917 314 AKPT 317 (497)
Q Consensus 314 ~~p~ 317 (497)
....
T Consensus 183 ~~S~ 186 (547)
T PRK08132 183 ARSP 186 (547)
T ss_pred CCcH
Confidence 8764
No 361
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.73 E-value=0.00017 Score=73.30 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEeccCcCC
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPT 317 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~~D~vv~a~G~~p~ 317 (497)
+..+.-.......++|-++.+.++|+++..+ ++ +.+|...|.+ ++.++.||-|+|.-.+
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 3455566667778999999999999999864 44 7778776532 5899999999997654
No 362
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.72 E-value=0.00035 Score=70.32 Aligned_cols=97 Identities=22% Similarity=0.302 Sum_probs=70.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------c--------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------L-------------- 255 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------~-------------- 255 (497)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 4899999999999999999999999999976432100 0
Q ss_pred -c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 256 -F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 256 -~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
+ ...+.+.+.+.+.+.|++++ ..++..++..+ +....+.+++|+++.+|.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 01233445556677799886 45788887542 333457778888999999999999876
No 363
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.72 E-value=5.7e-05 Score=75.44 Aligned_cols=105 Identities=21% Similarity=0.193 Sum_probs=63.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccC-HH-----------------HHHHHHHHHHHCCcEEEcCC
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT-PS-----------------LAQRYEQLYQQNGVKFVKGA 279 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~-~~-----------------~~~~~~~~l~~~GV~i~~~~ 279 (497)
+|+|||||..|+|+|..|++.|.+|+++++.+..+..... .. ....+.+.++..|..+....
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~a 81 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITAA 81 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeehh
Confidence 6999999999999999999999999999977654321100 00 01123456666665555444
Q ss_pred eEEEEEeCCCCcEE------------------EEEeCCC--cEE-EcCEEEEeccCcCCCcchhhc
Q 010917 280 SIKNLEAGSDGRVA------------------AVKLEDG--STI-DADTIVIGIGAKPTVSPFERV 324 (497)
Q Consensus 280 ~v~~i~~~~~~~v~------------------~v~~~~g--~~i-~~D~vv~a~G~~p~~~~~~~~ 324 (497)
....+.. .+.+. .+....+ +.+ ..|.||+|+|..++..+.+.+
T Consensus 82 d~~~Ipa--gg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG~~~s~~La~~L 145 (433)
T TIGR00137 82 DRHAVPA--GGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATGPLTSPALSEDL 145 (433)
T ss_pred hhhCCCC--CceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCCCCccHHHHHHH
Confidence 4443321 11100 0011122 123 467999999998887775543
No 364
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.72 E-value=0.00078 Score=67.95 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=87.5
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh----------------------------------------h
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R 254 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------------------------~ 254 (497)
..++|+|||+|++|+-.|..|.+.|.++++++|.+.+.. +
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 368899999999999999999999999999998843221 0
Q ss_pred c-cCH-HHHHHHHHHHHHCCc--EEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEeccCc--CCCcchhhc
Q 010917 255 L-FTP-SLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV 324 (497)
Q Consensus 255 ~-~~~-~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vv~a~G~~--p~~~~~~~~ 324 (497)
. .+. ++.++++...+.-++ .+.+++.+.+++...+|. -.|.+.++ ++.-+|.|++|+|.- |+.+.....
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 1 111 466777777777775 577788888887654222 13333332 467799999999987 554444433
Q ss_pred CCcccCCCEEecCCCCC----CCCcEEEec
Q 010917 325 GLNSSVGGIQVDGQFRT----RMPGIFAIG 350 (497)
Q Consensus 325 gl~~~~g~i~vd~~~~t----~~~~iya~G 350 (497)
+++.=.|.+.---.++. ....|.++|
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG 193 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVG 193 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEEC
Confidence 33222333332222222 236688888
No 365
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.71 E-value=0.00013 Score=77.30 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=29.1
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 63 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 63 VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
|||||+|.|||+||..+++.|. +|+|+||.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~---~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY---HVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC---CEEEEEecC
Confidence 6999999999999999999987 899999986
No 366
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.71 E-value=0.00035 Score=70.76 Aligned_cols=98 Identities=22% Similarity=0.359 Sum_probs=70.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccc-------------hh-------h------c--------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-------------LQ-------R------L-------------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~-------------~~-------~------~-------------- 255 (497)
.+|+|||+|+.|+-+|..|++.|.+|+++++. +.. .+ . .
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 84 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW 84 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence 47999999999999999999999999999974 110 00 0 0
Q ss_pred ---------cC---------------HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 010917 256 ---------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 310 (497)
Q Consensus 256 ---------~~---------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~ 310 (497)
++ ..+...+.+.+.+ .||+++.++++++++.++++ ..+.+++|+++.+|+||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvIg 162 (405)
T PRK08850 85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVVG 162 (405)
T ss_pred eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEEE
Confidence 00 0011223333334 47999999999999765333 357788999999999999
Q ss_pred eccCcC
Q 010917 311 GIGAKP 316 (497)
Q Consensus 311 a~G~~p 316 (497)
|.|...
T Consensus 163 ADG~~S 168 (405)
T PRK08850 163 ADGANS 168 (405)
T ss_pred eCCCCC
Confidence 999765
No 367
>PLN02661 Putative thiazole synthesis
Probab=97.69 E-value=0.0011 Score=64.39 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcchhh-------------------c-------cC-----------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR-------------------L-------FT----------- 257 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~-------------------~-------~~----------- 257 (497)
.-.|+|||+|..|+-+|..|++. |.+|+++++...+... . ++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 35799999999999999999976 8899999987543110 0 00
Q ss_pred HHHHHHHH-HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC------C--C------cEEEcCEEEEeccCcC
Q 010917 258 PSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTIVIGIGAKP 316 (497)
Q Consensus 258 ~~~~~~~~-~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~------~--g------~~i~~D~vv~a~G~~p 316 (497)
..+...+. +.+++.||+++.++.+.++..+ ++++.++... + + ..+.++.||+|||..+
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 01111222 3444578999999999998754 5667676631 1 1 2689999999999665
No 368
>PRK07208 hypothetical protein; Provisional
Probab=97.67 E-value=5.3e-05 Score=78.55 Aligned_cols=57 Identities=28% Similarity=0.399 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe--CCCc--EEEcCEEEEeccC
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTIVIGIGA 314 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~--~~g~--~i~~D~vv~a~G~ 314 (497)
..+.+.+.+.+++.|+++++++.|++|...+++.+..+.. .+|+ ++.+|.||+++..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 4567788888899999999999999998765554444443 2453 6899999999764
No 369
>PRK10015 oxidoreductase; Provisional
Probab=97.66 E-value=0.00058 Score=69.52 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=71.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch------------------hhc-----------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL----------------------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------~~~----------------------- 255 (497)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. +.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 369999999999999999999999999998763210 000
Q ss_pred --c------------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 256 --F------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 256 --~------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
+ -..+-.++.+..++.|++++.+++|+++... ++.+..+.. ++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 0012234556667889999999999998754 455544543 44679999999999975
Q ss_pred C
Q 010917 316 P 316 (497)
Q Consensus 316 p 316 (497)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
No 370
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.0018 Score=66.02 Aligned_cols=136 Identities=21% Similarity=0.303 Sum_probs=86.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCc-EEEEecCCcchhh-----------------------cc--------CHHHHHH
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQR-----------------------LF--------TPSLAQR 263 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~-----------------------~~--------~~~~~~~ 263 (497)
..+|+|||+|++|+-+|..|.+.|.. +.++++.+.+... .+ ...+.++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 46799999999999999999999998 9999988432110 00 0125677
Q ss_pred HHHHHHHCCcEE--EcCCeEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEeccCc--CCCcchhhcCCcccCCCEEecC
Q 010917 264 YEQLYQQNGVKF--VKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAK--PTVSPFERVGLNSSVGGIQVDG 337 (497)
Q Consensus 264 ~~~~l~~~GV~i--~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~~D~vv~a~G~~--p~~~~~~~~gl~~~~g~i~vd~ 337 (497)
+.+.+++.++.. ..++.|..++.++++..-.|+++++.+ +.+|.||+|+|.- |+..-+ .|++.-.|.+.--.
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--~G~~~f~g~~~HS~ 165 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--AGLDEFKGRILHSA 165 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC--CCccCCCceEEchh
Confidence 888888776543 344556556655666666788888765 5599999999983 332222 23332223322211
Q ss_pred C----CCCCCCcEEEecccc
Q 010917 338 Q----FRTRMPGIFAIGDVA 353 (497)
Q Consensus 338 ~----~~t~~~~iya~GD~~ 353 (497)
+ ..-.-++|-+||--+
T Consensus 166 ~~~~~~~~~GKrV~VIG~Ga 185 (443)
T COG2072 166 DWPNPEDLRGKRVLVIGAGA 185 (443)
T ss_pred cCCCccccCCCeEEEECCCc
Confidence 1 222457788888443
No 371
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.64 E-value=0.00055 Score=68.53 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=70.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC----cc----------------hhh-----------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----------------LQR----------------------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~----~~----------------~~~----------------------- 254 (497)
+|+|||||+.|+-+|..|++.|.+|+++++.+ .+ +..
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999641 10 000
Q ss_pred ------------------ccCHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 255 ------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 255 ------------------~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
..-..+.+.+.+.+.+. +++++.+++++++...+++ + .+.++++ ++.+|+||-|-|..
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCC
Confidence 00012334445555555 4899999999998765443 3 4677766 89999999999987
Q ss_pred CCC
Q 010917 316 PTV 318 (497)
Q Consensus 316 p~~ 318 (497)
...
T Consensus 160 S~v 162 (374)
T PRK06617 160 SKV 162 (374)
T ss_pred chh
Confidence 543
No 372
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.63 E-value=0.00015 Score=77.96 Aligned_cols=91 Identities=21% Similarity=0.352 Sum_probs=67.1
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++.++.....+.+++.||+++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 468999999999999999999999999999998765321 113455555566778889999999986521
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
+ +.+.+ ....+|.|++|+|..+
T Consensus 403 --~-----i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 --D-----ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence 0 11111 1246999999999864
No 373
>PRK06185 hypothetical protein; Provisional
Probab=97.63 E-value=0.00066 Score=68.82 Aligned_cols=109 Identities=25% Similarity=0.315 Sum_probs=74.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh----------------------h-------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R------------------- 254 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------------------~------------------- 254 (497)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 45799999999999999999999999999997632100 0
Q ss_pred ---c----------------cCHHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEE--EeCCCc-EEEcCEEEEe
Q 010917 255 ---L----------------FTPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAV--KLEDGS-TIDADTIVIG 311 (497)
Q Consensus 255 ---~----------------~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v--~~~~g~-~i~~D~vv~a 311 (497)
. ....+.+.+.+.+.+ .|++++.+++++++... ++.+..+ ...+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0 001122334444444 48999999999999765 4444433 344664 7999999999
Q ss_pred ccCcCCCcchhhcCCc
Q 010917 312 IGAKPTVSPFERVGLN 327 (497)
Q Consensus 312 ~G~~p~~~~~~~~gl~ 327 (497)
.|.... +-+.+++.
T Consensus 165 dG~~S~--vr~~~gi~ 178 (407)
T PRK06185 165 DGRHSR--VRALAGLE 178 (407)
T ss_pred CCCchH--HHHHcCCC
Confidence 998753 33444443
No 374
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.63 E-value=0.00015 Score=77.65 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=67.9
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch-------hh-ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. .+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 46899999999999999999999999999999886542 11 1345556666677889999999887541 11
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
+.+.+. ...+|.||+|+|..+.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 112221 2359999999998753
No 375
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.62 E-value=4.6e-05 Score=77.51 Aligned_cols=107 Identities=24% Similarity=0.325 Sum_probs=27.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------- 254 (497)
.|+|||||+.|+-.|..+++.|.+|.|+++.+.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 4899999999999999999999999999988543110
Q ss_pred -----ccCHH-HHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEeccCcCCCcchhhcC
Q 010917 255 -----LFTPS-LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVG 325 (497)
Q Consensus 255 -----~~~~~-~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~~D~vv~a~G~~p~~~~~~~~g 325 (497)
.+++. +...+.+.+++.||++++++.+.++..+ ++++.+|.+.+ ..++.++.+|-|+|- -+++..+|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~aG 156 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALAG 156 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc---cccccccc
Confidence 01111 1223556677889999999999999864 66788888765 468999999999993 24555555
Q ss_pred Ccc
Q 010917 326 LNS 328 (497)
Q Consensus 326 l~~ 328 (497)
.+.
T Consensus 157 ~~~ 159 (428)
T PF12831_consen 157 APY 159 (428)
T ss_dssp ---
T ss_pred ccc
Confidence 544
No 376
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.62 E-value=0.00078 Score=59.96 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=69.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhcc-------------------------------------CH
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------------------------------------TP 258 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~-------------------------------------~~ 258 (497)
...|+|||+|+.|+-+|..|++.|.+|.++++...+..... ..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 45799999999999999999999999999998743321100 01
Q ss_pred HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEeccCcCCC
Q 010917 259 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV 318 (497)
Q Consensus 259 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~~D~vv~a~G~~p~~ 318 (497)
++...+....-+.|++++....++.+--.+++++.++..+ |--.+.+..||-|||.....
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 1223333333459999999999998765555788877663 22479999999999987653
No 377
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.62 E-value=0.00078 Score=68.11 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=69.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh------------------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 254 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------ 254 (497)
++|+|||||..|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999977321000
Q ss_pred -cc-------------------C-HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCcEEEcCEEE
Q 010917 255 -LF-------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV 309 (497)
Q Consensus 255 -~~-------------------~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~~D~vv 309 (497)
.+ . ..+.+.+.+.+.+ .|+++++++++++++..+++ + .+++ .+++++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence 00 0 1122334444444 47999999999999864333 2 3333 344679999999
Q ss_pred EeccCcCC
Q 010917 310 IGIGAKPT 317 (497)
Q Consensus 310 ~a~G~~p~ 317 (497)
-|-|....
T Consensus 161 gADG~~S~ 168 (400)
T PRK06475 161 ACDGVWSM 168 (400)
T ss_pred ECCCccHh
Confidence 99998653
No 378
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.61 E-value=0.00031 Score=69.98 Aligned_cols=94 Identities=22% Similarity=0.328 Sum_probs=64.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCcchhh----c----cCHHHHH-------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR----L----FTPSLAQ------------------------- 262 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~----~----~~~~~~~------------------------- 262 (497)
.|+|||+|..|+.+|..|++. |.+|.++++.+.+.+. + .++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 389999999999999999987 9999999987633221 0 1111100
Q ss_pred ---------HHHHH-HHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 263 ---------RYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 263 ---------~~~~~-l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
.+.+. +++.+..++.+.+|.+++. + .+++.+|+++.+|.||.|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence 11111 2333444677888888853 2 255588999999999999998864
No 379
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.60 E-value=6.8e-05 Score=77.13 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=32.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
++|+|||||+|||+||+.|++.|. ..+|+|+|+++...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCc
Confidence 479999999999999999999882 23899999997653
No 380
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.60 E-value=0.0007 Score=76.05 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=70.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhcc----------CHHHHHHHHHHHHHC-CcEEEcCCeEEEE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL 284 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~----------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i 284 (497)
..+|+|||+|+.|+..|..+++.|.+|++++..+.+..... ..++...+.+.+++. +|+++.+++|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 46799999999999999999999999999998765432111 123333444555555 5999999999887
Q ss_pred EeCCCCcEEEEE-eC-------CC------cEEEcCEEEEeccCcCCC
Q 010917 285 EAGSDGRVAAVK-LE-------DG------STIDADTIVIGIGAKPTV 318 (497)
Q Consensus 285 ~~~~~~~v~~v~-~~-------~g------~~i~~D~vv~a~G~~p~~ 318 (497)
.. ++.+..+. .. ++ .++.+|.||+|+|..+..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 63 22221111 00 11 268999999999998754
No 381
>PLN02529 lysine-specific histone demethylase 1
Probab=97.59 E-value=9.8e-05 Score=78.92 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
....++|+|||||+|||+||..|+++|+ +|+|+|+.+...
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 196 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG 196 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence 4456899999999999999999999998 799999987543
No 382
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.59 E-value=0.00076 Score=68.05 Aligned_cols=107 Identities=27% Similarity=0.392 Sum_probs=74.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCC-c-------------chhh---------c---------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------LLQR---------L--------------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~-~-------------~~~~---------~--------------- 255 (497)
-+|+|||+|+.|+-+|..|++. |.+|+|+++.. . +.+. .
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4699999999999999999998 99999999831 1 0000 0
Q ss_pred -----------cC---------------HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 010917 256 -----------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 308 (497)
Q Consensus 256 -----------~~---------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~v 308 (497)
+. ..+.+.+.+.+.+ .|++++.+++++++...++ .+ .+++++|.++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQG-SV-RVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC-eE-EEEECCCCEEEeCEE
Confidence 00 0112233444444 4799999999999875433 33 477788888999999
Q ss_pred EEeccCcCCCcchhhcCCc
Q 010917 309 VIGIGAKPTVSPFERVGLN 327 (497)
Q Consensus 309 v~a~G~~p~~~~~~~~gl~ 327 (497)
|.|.|.... +.+.+++.
T Consensus 162 I~AdG~~S~--vr~~~~~~ 178 (395)
T PRK05732 162 VAADGSHSA--LREALGID 178 (395)
T ss_pred EEecCCChh--hHHhhCCC
Confidence 999998763 44444443
No 383
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.57 E-value=0.00071 Score=68.11 Aligned_cols=98 Identities=24% Similarity=0.334 Sum_probs=70.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh---------------------h-----------------c---
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------R-----------------L--- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~-----------------~--- 255 (497)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.... . .
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~ 87 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI 87 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence 4799999999999999999999999999998632100 0 0
Q ss_pred ------c---------------CHHHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917 256 ------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313 (497)
Q Consensus 256 ------~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G 313 (497)
+ ...+.+.+.+.+.+. ++. +.+++|.+++..+++ + .+++++|+++.+|.||.|.|
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG 164 (388)
T PRK07494 88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGADG 164 (388)
T ss_pred CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEecC
Confidence 0 011233344445554 466 778999999765433 3 47788888999999999999
Q ss_pred CcCC
Q 010917 314 AKPT 317 (497)
Q Consensus 314 ~~p~ 317 (497)
....
T Consensus 165 ~~S~ 168 (388)
T PRK07494 165 RNSP 168 (388)
T ss_pred CCch
Confidence 8753
No 384
>PRK09897 hypothetical protein; Provisional
Probab=97.56 E-value=0.0013 Score=68.29 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=66.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC--cEEEEecCCcchhh----------------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR---------------------------------------- 254 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~---------------------------------------- 254 (497)
++|+|||+|+.|+-+|..|.+.+. +|+|+++...+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 479999999999999999987654 79999985322110
Q ss_pred --------------c-----cCHHHHHH---HHHHHHHCC--cEEEcCCeEEEEEeCCCCcEEEEEeCC-CcEEEcCEEE
Q 010917 255 --------------L-----FTPSLAQR---YEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIV 309 (497)
Q Consensus 255 --------------~-----~~~~~~~~---~~~~l~~~G--V~i~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~~D~vv 309 (497)
+ ++..+.+. +.+.+.+.| +.++.+++|++++..+++ + .+.+.+ +..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-V-MLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-E-EEEECCCCeEEEcCEEE
Confidence 0 00011111 222234555 788889899999865443 2 466655 4689999999
Q ss_pred EeccCcCC
Q 010917 310 IGIGAKPT 317 (497)
Q Consensus 310 ~a~G~~p~ 317 (497)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99997543
No 385
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.54 E-value=0.00052 Score=69.74 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=67.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC-CcEEEEecCCcchhhc----cCH-------------H--------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----FTP-------------S-------------------- 259 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~----~~~-------------~-------------------- 259 (497)
+|+|||+|..|+-+|..|++.| .+|+|+++.+.+.... +.+ .
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 5999999875431100 000 0
Q ss_pred ---------------------HHHHHHHHHHHC--CcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 260 ---------------------LAQRYEQLYQQN--GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 260 ---------------------~~~~~~~~l~~~--GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
....+.+.|.+. ++.++.+++|++++..+++ ..+.+.+|+++.+|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 001122222221 4567889999999865444 357788999999999999999764
No 386
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.54 E-value=0.00035 Score=79.69 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
...||||||+|.||++||.++++.|. +|+|+||.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCC
Confidence 35899999999999999999999987 8999999864
No 387
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.53 E-value=0.00021 Score=73.02 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=27.9
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 65 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 65 IIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
|||+|.||++||.++++.|. +|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga---~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGA---SVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 79999999999999999987 8999999863
No 388
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.52 E-value=0.0001 Score=73.13 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
+++|+|||||++|++||..|+++|+ +|+|+|+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence 4699999999999999999999998 8999997654
No 389
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.52 E-value=0.0011 Score=68.90 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=77.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-------------------------------c---------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------L--------- 255 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------~--------- 255 (497)
.-.|+|||+|..|+-.|..+++.|.+|.|+++.+.+... .
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 346999999999999999999999999999876421100 0
Q ss_pred -----------------------------------------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC
Q 010917 256 -----------------------------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 288 (497)
Q Consensus 256 -----------------------------------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~ 288 (497)
.+..+...+.+.+++.||++++++.++++...
T Consensus 141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~- 219 (506)
T PRK06481 141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK- 219 (506)
T ss_pred HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec-
Confidence 00113344556667889999999999999753
Q ss_pred CCcEEEEEe--CCC--cEEEcCEEEEecc-CcCCCcchhhc
Q 010917 289 DGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFERV 324 (497)
Q Consensus 289 ~~~v~~v~~--~~g--~~i~~D~vv~a~G-~~p~~~~~~~~ 324 (497)
++++..+.. .++ .++.++.||+|+| +..|.+++++.
T Consensus 220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~ 260 (506)
T PRK06481 220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAKY 260 (506)
T ss_pred CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHHh
Confidence 577766655 343 3689999999997 67776665554
No 390
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.50 E-value=0.00073 Score=68.14 Aligned_cols=94 Identities=17% Similarity=0.352 Sum_probs=68.4
Q ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------c----------------------
Q 010917 220 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------L---------------------- 255 (497)
Q Consensus 220 vVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------~---------------------- 255 (497)
+|||+|..|+-+|..+++.|.+|+++++.+.+... .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 58999999999999999999999999876432210 0
Q ss_pred ----------------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917 256 ----------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313 (497)
Q Consensus 256 ----------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G 313 (497)
....+.+.+.+.+++.|+++++++.+.+++.. ++. ..+.+ +++++.+|.||+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCC
Confidence 00123344566677889999999999999754 332 34555 566799999999999
Q ss_pred CcC
Q 010917 314 AKP 316 (497)
Q Consensus 314 ~~p 316 (497)
...
T Consensus 158 ~~s 160 (400)
T TIGR00275 158 GLS 160 (400)
T ss_pred Ccc
Confidence 753
No 391
>PRK06126 hypothetical protein; Provisional
Probab=97.49 E-value=0.0012 Score=69.58 Aligned_cols=101 Identities=25% Similarity=0.332 Sum_probs=69.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh-----------------------------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 254 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------------- 254 (497)
..+|+|||+|+.|+-+|..|++.|.+|+|+++.+.....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 457999999999999999999999999999977321000
Q ss_pred -------------c----------------------cC-HHHHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEe
Q 010917 255 -------------L----------------------FT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL 297 (497)
Q Consensus 255 -------------~----------------------~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~ 297 (497)
. .+ ..+...+.+.+++ .|+++++++++++++.++++....+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 166 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence 0 00 0122233444444 489999999999998654432222221
Q ss_pred -CCCc--EEEcCEEEEeccCcC
Q 010917 298 -EDGS--TIDADTIVIGIGAKP 316 (497)
Q Consensus 298 -~~g~--~i~~D~vv~a~G~~p 316 (497)
.+|+ ++.+|.||.|.|...
T Consensus 167 ~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 167 LDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred CCCCcEEEEEEEEEEecCCcch
Confidence 3453 689999999999764
No 392
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.48 E-value=0.0012 Score=67.61 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEeccC-cCCCcchhh
Q 010917 261 AQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGA-KPTVSPFER 323 (497)
Q Consensus 261 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~~D~vv~a~G~-~p~~~~~~~ 323 (497)
...+.+.+++.|+++++++.++++..++++++..+... +++ .+.++.||+|+|. ..|.++++.
T Consensus 133 ~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~ 200 (439)
T TIGR01813 133 VQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK 200 (439)
T ss_pred HHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence 34455666788999999999999987656677666553 343 4789999999994 555555444
No 393
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.00013 Score=73.10 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=33.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
+||+|+|||.|||+||+.|+++|+ +|||+|..+...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccC
Confidence 489999999999999999999999 899999998753
No 394
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.46 E-value=0.0017 Score=65.48 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=70.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcc------------------hhh------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQR------------------------ 254 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~------------------~~~------------------------ 254 (497)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.. +.+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 46999999999999999999999999999987531 000
Q ss_pred ----cc-------------CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeccC
Q 010917 255 ----LF-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGA 314 (497)
Q Consensus 255 ----~~-------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vv~a~G~ 314 (497)
.+ -..+.+.+.+...+.|+++++++++++++..++.. ..|++ .+|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCC
Confidence 00 01222334444467899999999999987522222 24555 4664 6899999999998
Q ss_pred cCC
Q 010917 315 KPT 317 (497)
Q Consensus 315 ~p~ 317 (497)
...
T Consensus 162 ~S~ 164 (392)
T PRK08243 162 HGV 164 (392)
T ss_pred CCc
Confidence 754
No 395
>PLN02268 probable polyamine oxidase
Probab=97.45 E-value=0.00014 Score=74.47 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=33.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
++|+|||||.|||+||+.|.+.|+ +|+|+|+.+...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCC
Confidence 489999999999999999999988 899999998764
No 396
>PLN02576 protoporphyrinogen oxidase
Probab=97.45 E-value=0.00016 Score=75.31 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=34.9
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP 99 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~~V~lie~~~~~~ 99 (497)
+...++|+|||||++||+||+.|.+. |+ +|+|+|+++...
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG 49 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG 49 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence 34457999999999999999999999 87 899999997653
No 397
>PLN02985 squalene monooxygenase
Probab=97.45 E-value=0.00017 Score=74.99 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=34.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
....+||+|||||++|+++|..|++.|+ +|+|+|+...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcCC
Confidence 4556899999999999999999999998 8999999753
No 398
>PRK13984 putative oxidoreductase; Provisional
Probab=97.45 E-value=0.00037 Score=74.41 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=67.5
Q ss_pred ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEE
Q 010917 214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 285 (497)
Q Consensus 214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~ 285 (497)
..+++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+... .+..++.....+.+++.|++++.++.+.. +
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~ 359 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK-D 359 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC-c
Confidence 35788999999999999999999999999999887654210 12344555556778899999999977632 0
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 286 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 286 ~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
+..++ ....+|.||+|+|..+
T Consensus 360 ---------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 ---------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred ---------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999864
No 399
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.44 E-value=0.0018 Score=66.24 Aligned_cols=100 Identities=21% Similarity=0.324 Sum_probs=71.8
Q ss_pred eEEEEcCCHHHHHHHHHHHh----CCCcEEEEecCC--cch-------------------hh------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL-------------------QR------------------ 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~----~g~~Vtlv~~~~--~~~-------------------~~------------------ 254 (497)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... ++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 48999999999999999998 799999999832 110 00
Q ss_pred ------------------ccC--------------HHHHHHHHHHHHHCC---cEEEcCCeEEEEEeC-----CCCcEEE
Q 010917 255 ------------------LFT--------------PSLAQRYEQLYQQNG---VKFVKGASIKNLEAG-----SDGRVAA 294 (497)
Q Consensus 255 ------------------~~~--------------~~~~~~~~~~l~~~G---V~i~~~~~v~~i~~~-----~~~~v~~ 294 (497)
.++ ..+...+.+.+++.+ ++++.++++.+++.. +++.-..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 000 112333455556654 999999999999642 1222246
Q ss_pred EEeCCCcEEEcCEEEEeccCcCC
Q 010917 295 VKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 295 v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
+++.+|+++.+|+||-|-|....
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCCh
Confidence 78899999999999999998764
No 400
>PLN02568 polyamine oxidase
Probab=97.43 E-value=0.00018 Score=74.99 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=35.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCC--CCCcEEEEcCCCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAP 99 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~--~~~~V~lie~~~~~~ 99 (497)
+++.++|+|||||+|||+||..|.+.|. +..+|+|+|+.....
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 4556899999999999999999999871 123899999987653
No 401
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.41 E-value=0.0021 Score=55.57 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=31.8
Q ss_pred CcEEE-cCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 272 GVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 272 GV~i~-~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
|+++. ...+|+.+...+++. .+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 54443 355888998776553 578899999999999999995
No 402
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.40 E-value=0.00046 Score=72.93 Aligned_cols=92 Identities=21% Similarity=0.230 Sum_probs=65.8
Q ss_pred ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh--------hccCHHHHHHHHHHHHHCCcEEEcCCeE-EEE
Q 010917 214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASI-KNL 284 (497)
Q Consensus 214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v-~~i 284 (497)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++.+....-.+.+++.|++++.++.+ ..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 4678999999999999999999999999999997765421 1123344444455677899999988765 332
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 285 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 285 ~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
... .....+|.|++|+|..+.
T Consensus 215 ~~~------------~~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 215 TLE------------QLEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CHH------------HHHhhCCEEEEeeCCCCC
Confidence 210 011248999999998753
No 403
>PRK06996 hypothetical protein; Provisional
Probab=97.39 E-value=0.0014 Score=66.23 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=72.8
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCC----CcEEEEecCCcc------------------hhh------------------
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHL------------------LQR------------------ 254 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g----~~Vtlv~~~~~~------------------~~~------------------ 254 (497)
...+|+|||||+.|+-+|..|++.| .+|+++++.+.. +..
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 3457999999999999999999987 469999875210 000
Q ss_pred ---------------------cc-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC---cEEEcCEEE
Q 010917 255 ---------------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV 309 (497)
Q Consensus 255 ---------------------~~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~~D~vv 309 (497)
.. -..+.+.+.+.+++.|++++.++++++++..+++. .+.+.++ +++.+|+||
T Consensus 90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAV 167 (398)
T ss_pred CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEE
Confidence 00 12345667777788899999999999997654442 4566654 589999999
Q ss_pred EeccCc
Q 010917 310 IGIGAK 315 (497)
Q Consensus 310 ~a~G~~ 315 (497)
-|-|..
T Consensus 168 gADG~~ 173 (398)
T PRK06996 168 QAEGGL 173 (398)
T ss_pred ECCCCC
Confidence 999954
No 404
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.38 E-value=0.00052 Score=66.96 Aligned_cols=55 Identities=15% Similarity=0.322 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEecc
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 313 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G 313 (497)
..++..+.+-+++.|-+|.+...|++|.-+ +|++.+|.+.||+++.+..||.-++
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence 356777888899999999999999999865 5999999999999999977666544
No 405
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.38 E-value=0.0017 Score=64.91 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=70.3
Q ss_pred eEEEEcCCHHHHHHHHHH--HhCCCcEEEEecCCcc--hhh---------------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQR--------------------------------------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l--~~~g~~Vtlv~~~~~~--~~~--------------------------------------- 254 (497)
.|+|||+|+.|+-+|..| ++.|.+|.++++.+.. ...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 389999999999999999 8889999999876443 100
Q ss_pred ---ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 255 ---LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 255 ---~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
.-...+.+.+.+.+.+.| .+..+.+|++|+..++ ...+.+++|+++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 001123444555556445 4566788999986544 33578899999999999999996544
No 406
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.36 E-value=0.00025 Score=69.83 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=35.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
....+|||||||.|||+||.+|.+.|+. +++|+|.++...
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIG 58 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIG 58 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccC
Confidence 3456999999999999999999999875 899999998653
No 407
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.35 E-value=0.00024 Score=70.24 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
.||+|||||+||+++|..|++.|. +|+|+|+.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCC
Confidence 589999999999999999999886 89999997654
No 408
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.34 E-value=0.00024 Score=73.93 Aligned_cols=37 Identities=19% Similarity=0.423 Sum_probs=33.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
...+||+|||||..|+++|+.|+++|+ +|+|||+++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl---~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGL---SVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCC
Confidence 346899999999999999999999998 8999999754
No 409
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.34 E-value=0.00022 Score=75.35 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=33.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
.++.+|+|||||++||++|..|+++|+ +|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence 345899999999999999999999998 899999975
No 410
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.33 E-value=0.00024 Score=73.88 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-----cEEEcCEEEEeccC
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGA 314 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~~D~vv~a~G~ 314 (497)
...+.+.+.+.++++|++|++++.|++|... ++++..+.+.++ +++.+|.||+++..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 4567888889999999999999999999865 444445655554 57899999999874
No 411
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.33 E-value=0.0028 Score=63.46 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=36.1
Q ss_pred HHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 268 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 268 l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
+.+.|++++.+++|++++..+ +.+ .+.+.+| ++.+|.||+|+|....
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHCCCEEECCCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcchh
Confidence 456789999999999998643 333 4677777 6999999999997643
No 412
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.32 E-value=0.00032 Score=65.38 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=29.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
..|||||+|.|||+|+..+...|- .|+|+|++.
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg---~V~llek~~ 42 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGG---IVILLEKAG 42 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCC---eEEEEeccC
Confidence 379999999999999999999875 699999986
No 413
>PRK07538 hypothetical protein; Provisional
Probab=97.31 E-value=0.0024 Score=64.85 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=66.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh----------------------------------cc-------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF------- 256 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------~~------- 256 (497)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+. +.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 6999999999999999999999999999987432100 00
Q ss_pred -------------------CHHHHHHHHHHHHH-CC-cEEEcCCeEEEEEeCCCCcEEEEEeC-C--CcEEEcCEEEEec
Q 010917 257 -------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLE-D--GSTIDADTIVIGI 312 (497)
Q Consensus 257 -------------------~~~~~~~~~~~l~~-~G-V~i~~~~~v~~i~~~~~~~v~~v~~~-~--g~~i~~D~vv~a~ 312 (497)
-..+.+.+.+.+.+ .| ++++.++++++++..+++.+..+... + ++++.+|+||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence 00112223333333 35 57999999999987655533222211 1 2489999999999
Q ss_pred cCcC
Q 010917 313 GAKP 316 (497)
Q Consensus 313 G~~p 316 (497)
|...
T Consensus 162 G~~S 165 (413)
T PRK07538 162 GIHS 165 (413)
T ss_pred CCCH
Confidence 9864
No 414
>PTZ00367 squalene epoxidase; Provisional
Probab=97.28 E-value=0.00028 Score=73.88 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
..+||+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence 46899999999999999999999998 899999975
No 415
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.26 E-value=0.003 Score=66.42 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=30.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
-.|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 46999999999999999999999999999976
No 416
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.00087 Score=67.28 Aligned_cols=97 Identities=23% Similarity=0.359 Sum_probs=66.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc------------------------------------------chhh
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------------------------------------LLQR 254 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~------------------------------------------~~~~ 254 (497)
-.|+|||||..|+|.|.+.++.|.++.+++.... .+..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 4699999999999999999999999888765410 0000
Q ss_pred c-----------cCHH-HHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 255 L-----------FTPS-LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 255 ~-----------~~~~-~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
. .|.. ....+++.++. .++.++.+. |.++...++.++.+|.+.+|..+.|+.||+++|.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 0 1111 12333444433 467776553 5555533333688999999999999999999994
No 417
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.26 E-value=0.0032 Score=63.43 Aligned_cols=100 Identities=19% Similarity=0.227 Sum_probs=69.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--h----hcc----------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----RLF---------------------------------- 256 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~----~~~---------------------------------- 256 (497)
.+|+|||+|+.|+-+|..|++.|.+|+|+++.+... . ..+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999875310 0 000
Q ss_pred ------------------C-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcCEEEEeccC
Q 010917 257 ------------------T-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA 314 (497)
Q Consensus 257 ------------------~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D~vv~a~G~ 314 (497)
. ..+...+.+.+.+.|+.++.+.+++.+...++.. ..|++. +|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 0 1122334455566788888888877775322222 245564 675 6899999999998
Q ss_pred cCC
Q 010917 315 KPT 317 (497)
Q Consensus 315 ~p~ 317 (497)
...
T Consensus 162 ~S~ 164 (390)
T TIGR02360 162 HGV 164 (390)
T ss_pred chh
Confidence 653
No 418
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00077 Score=72.36 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=70.8
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhh--------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEe
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 286 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~ 286 (497)
.+++|.|||+|+.|+.+|..|.+.|+.|++++|.+++..- -+|..+.++-.+.|.+.||+|++++.|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 5789999999999999999999999999999999875421 245566677778899999999999765321
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 287 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 287 ~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
+. -|+-.-+.|.||+|+|..-.
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCCCC
Confidence 11 13333567899999998643
No 419
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.25 E-value=0.0004 Score=66.34 Aligned_cols=98 Identities=14% Similarity=0.213 Sum_probs=72.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 138 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (497)
-+++++|||||.-||..+--..+.|- +||++|-.++..- .+ + .++ ...+++.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~---~m------D-----~Ei-----------sk~~qr~ 261 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGG---VM------D-----GEI-----------SKAFQRV 261 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhcc---cc------C-----HHH-----------HHHHHHH
Confidence 35899999999999999999999986 8999997654310 00 0 000 1245677
Q ss_pred HHHcCcEEEeCCcEEEEecCCC---EEEECC---C--cEEEeccEEeccCCCCC
Q 010917 139 YKEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS 184 (497)
Q Consensus 139 ~~~~~v~~~~~~~v~~i~~~~~---~v~~~~---g--~~i~~d~lvlAtG~~~~ 184 (497)
+.+.|++|.++++|..++++.. .+.+.+ + +++++|.|++|+|-+|.
T Consensus 262 L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 262 LQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred HHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 8889999999999999987665 333332 2 47899999999997765
No 420
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.25 E-value=0.0034 Score=63.19 Aligned_cols=96 Identities=22% Similarity=0.407 Sum_probs=66.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC-Ccc-----------hh---------------------h----------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------LQ---------------------R---------- 254 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~-----------~~---------------------~---------- 254 (497)
+|+|||+|+.|+-+|..|++.|.+|.++++. +.. +. .
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999876 210 00 0
Q ss_pred ---c---cCH-HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC------C--cEEEcCEEEEeccCcC
Q 010917 255 ---L---FTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKP 316 (497)
Q Consensus 255 ---~---~~~-~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~------g--~~i~~D~vv~a~G~~p 316 (497)
. ++. .+-+.+.+...+.|++++.+ +++++..++++ + .+.+.+ | .++.+|.||.|.|...
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-V-TLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-E-EEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 0 010 12234555567789999765 58888765433 2 344432 2 4799999999999765
No 421
>PRK11445 putative oxidoreductase; Provisional
Probab=97.23 E-value=0.0051 Score=60.99 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=66.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch--------hhccCH-------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTP------------------------------- 258 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------~~~~~~------------------------------- 258 (497)
+|+|||+|+.|+-+|..|++. .+|+++++.+.+. ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999999 9999999775320 000000
Q ss_pred ------------------HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEeccCcCC
Q 010917 259 ------------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT 317 (497)
Q Consensus 259 ------------------~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~~D~vv~a~G~~p~ 317 (497)
++.+.+.+ ..+.|++++.++.+++++..+++. .+.+ .+|+ ++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~--~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGY--HVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEE--EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 00111122 235689999999999998654442 2443 5664 6899999999998653
No 422
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.22 E-value=0.00075 Score=73.38 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=32.6
Q ss_pred ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
..+++|+|||+|+.|+.+|..|++.|++||+++..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 35789999999999999999999999999999975
No 423
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0025 Score=56.49 Aligned_cols=99 Identities=15% Similarity=0.277 Sum_probs=72.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEe--------------------cCCcchhhccCHHHHHHHHHHHHHCCcEE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF--------------------PENHLLQRLFTPSLAQRYEQLYQQNGVKF 275 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~GV~i 275 (497)
..+|+|||+|+.+...|..+++.-.+..+++ .-|.+.....++++.+.+++.-++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 4589999999999999999887765555443 22444445567889999999999999999
Q ss_pred EcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCC
Q 010917 276 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 318 (497)
Q Consensus 276 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~ 318 (497)
++.+ |.+++.. .+.-.+ +.+.+.+.+|.||+|+|.....
T Consensus 88 ~tEt-Vskv~~s--skpF~l-~td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 88 ITET-VSKVDLS--SKPFKL-WTDARPVTADAVILATGASAKR 126 (322)
T ss_pred eeee-hhhcccc--CCCeEE-EecCCceeeeeEEEecccceee
Confidence 8764 6666532 222233 3466679999999999987653
No 424
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.20 E-value=0.0034 Score=63.81 Aligned_cols=59 Identities=25% Similarity=0.416 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccCcCC
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 317 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~~p~ 317 (497)
..+...+.+.++++|+++++++.++++..+ +++|.++... +|+ ++.++.||+|+|--..
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 345667788889999999999999999864 6788888776 454 5789999999997654
No 425
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.20 E-value=0.005 Score=62.13 Aligned_cols=98 Identities=19% Similarity=0.320 Sum_probs=64.5
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh------------h------c------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------R------L------------------------ 255 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------~------~------------------------ 255 (497)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.... . .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 689999999999999999999999999987632100 0 0
Q ss_pred --------cC-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeC-CCCcEEEEEe--CC-----C--cEEEcCEEEEeccCcC
Q 010917 256 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAKP 316 (497)
Q Consensus 256 --------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~~~v~~v~~--~~-----g--~~i~~D~vv~a~G~~p 316 (497)
++ ..+-+.+.+...+.|++++.++ +..++.. ..+....+++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 0112234555677899998775 6666421 1122223332 21 3 4799999999999876
No 426
>PLN02785 Protein HOTHEAD
Probab=97.19 E-value=0.0069 Score=63.95 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=31.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
...+|++|||||.||+.+|.+|.+ .. +|+|||+.+.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~---~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NF---SVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CC---cEEEEecCCC
Confidence 346999999999999999999999 34 8999999864
No 427
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.17 E-value=0.00075 Score=66.82 Aligned_cols=85 Identities=20% Similarity=0.444 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHC-CcEEEcCCeEEEEEeCCCC-cEEEEE-eC--CCcEEEcCEEEEeccCcCCCcchhhcCCccc--CC
Q 010917 259 SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDG-RVAAVK-LE--DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VG 331 (497)
Q Consensus 259 ~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~~-~v~~v~-~~--~g~~i~~D~vv~a~G~~p~~~~~~~~gl~~~--~g 331 (497)
.+.+.+.+.+.+. |++++++++|+.|+..+++ ..+.+. +. +..++.++.|++..|-.. ..+++.+|++-. -|
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~gyg 260 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKGYG 260 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhcccC
Confidence 3445555556666 9999999999999988777 333332 22 335799999999999765 367888888532 23
Q ss_pred CEEec-CCCCCCCC
Q 010917 332 GIQVD-GQFRTRMP 344 (497)
Q Consensus 332 ~i~vd-~~~~t~~~ 344 (497)
+..|. .++++..|
T Consensus 261 gfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 261 GFPVSGQFLRCKNP 274 (488)
T ss_pred CCcccceEEecCCH
Confidence 44443 35555444
No 428
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.16 E-value=0.0042 Score=61.96 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=28.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999865
No 429
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.15 E-value=0.0055 Score=65.38 Aligned_cols=32 Identities=38% Similarity=0.447 Sum_probs=30.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
-.|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999999876
No 430
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.13 E-value=0.00053 Score=71.33 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccC
Q 010917 258 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 314 (497)
Q Consensus 258 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~ 314 (497)
..+.+.+.+.++++|++++.++.|++|... ++++..|.+.+|+++++|.||+++|.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~ 284 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATR 284 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCCh
Confidence 457788889999999999999999999864 56777899999999999999999875
No 431
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.11 E-value=0.0062 Score=57.58 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHCCcEEEcCCeEEEEEe-CCCCcEEEEEeCCCcEEEcCEEEEeccCcCC
Q 010917 260 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 317 (497)
Q Consensus 260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~-~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~ 317 (497)
..+.++..+++.|+.++.+..++.++- ++++....|.+.+|..+.++.+|+++|.--+
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~ 213 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN 213 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence 345677778999999999999887762 2345566899999999999999999997654
No 432
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.10 E-value=0.0056 Score=63.10 Aligned_cols=97 Identities=28% Similarity=0.392 Sum_probs=67.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-----------------------h-------c-----------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------R-------L----------- 255 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------------------~-------~----------- 255 (497)
..|+|||+|..|+-+|..+++.|.+|.|++..+.... . .
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4699999999999999999999999999887421000 0 0
Q ss_pred ------------------------------------cCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCC
Q 010917 256 ------------------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 299 (497)
Q Consensus 256 ------------------------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~ 299 (497)
....+.+.+.+.+++.||+++.+ .++.+.. +++++..+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 01123344455556678888765 6666654 3566666665 5
Q ss_pred CcEEEcCEEEEeccCcC
Q 010917 300 GSTIDADTIVIGIGAKP 316 (497)
Q Consensus 300 g~~i~~D~vv~a~G~~p 316 (497)
++.+.++.||+|+|...
T Consensus 159 g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 159 GELLKFDATVIATGGFS 175 (466)
T ss_pred CEEEEeCeEEECCCcCc
Confidence 66799999999999644
No 433
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.09 E-value=0.00058 Score=68.30 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=31.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 61 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 61 ~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
.+|+|||||+||++||..|+++|+ +|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence 379999999999999999999998 8999998654
No 434
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.08 E-value=0.0059 Score=64.16 Aligned_cols=98 Identities=23% Similarity=0.289 Sum_probs=70.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh-------------------------------------------
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 253 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------- 253 (497)
-.|+|||+|..|+-.|..+++.|.+|.|+++.+....
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4699999999999999999999999999887521100
Q ss_pred ------------------------------------h-------ccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCC
Q 010917 254 ------------------------------------R-------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 290 (497)
Q Consensus 254 ------------------------------------~-------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~ 290 (497)
+ ..+..+...+.+.+++.||+++.++.+.++..++++
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 0 001223344556666778999999999998755456
Q ss_pred cEEEEEeC-------CC-cEEEcCEEEEeccC
Q 010917 291 RVAAVKLE-------DG-STIDADTIVIGIGA 314 (497)
Q Consensus 291 ~v~~v~~~-------~g-~~i~~D~vv~a~G~ 314 (497)
++.++... ++ ..+.++.||+|+|-
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 77666543 23 36899999999985
No 435
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.07 E-value=0.00068 Score=65.83 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
....+|+|+|||.+||++|++|++++. +..|+|+|+.+...
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG 49 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence 345799999999999999999999986 67799999988654
No 436
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.05 E-value=0.0008 Score=72.54 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=35.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
....++|+|||||++|++||+.|.+.|+ +|+|+|+.+...
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G 274 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG 274 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence 3456899999999999999999999998 899999987653
No 437
>PLN02676 polyamine oxidase
Probab=97.03 E-value=0.00091 Score=69.15 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=34.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
..+++|+|||||++||+||++|++.|.. +|+|+|+.+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~ 62 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRI 62 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCC
Confidence 3467999999999999999999999862 69999998764
No 438
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.00 E-value=0.00079 Score=70.92 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...||||||+|.|||+||.++++.|. +|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 35799999999999999999999987 899999987
No 439
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.99 E-value=0.0096 Score=60.93 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=65.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcch---h---------h------c----------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---Q---------R------L---------------------- 255 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~---------~------~---------------------- 255 (497)
.-+|+|||+|+.|.-+|..|++.|.+|.++++.+... . . .
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 3479999999999999999999999999998763210 0 0 0
Q ss_pred ----------cC-HHHHHHHHHHHHHCCcEEEcCCeEEEEEeCC--CCcEEEEEeCC-------C--cEEEcCEEEEecc
Q 010917 256 ----------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLED-------G--STIDADTIVIGIG 313 (497)
Q Consensus 256 ----------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~~~v~~v~~~~-------g--~~i~~D~vv~a~G 313 (497)
++ ..+-+.+.+...+.|++++.+ .+.+++... ++.+ .+.+.+ | .++.+|.||-|.|
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPY-VIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcE-EEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 00 012234555567789999866 466665321 2222 233321 3 4799999999999
Q ss_pred CcC
Q 010917 314 AKP 316 (497)
Q Consensus 314 ~~p 316 (497)
...
T Consensus 197 ~~S 199 (450)
T PLN00093 197 ANS 199 (450)
T ss_pred cch
Confidence 754
No 440
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.98 E-value=0.00082 Score=70.12 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
...||||||+| ||++||.++++.|. +|+||||.+..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~~ 41 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDKF 41 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCCC
Confidence 36799999999 99999999999997 89999998753
No 441
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.97 E-value=0.0046 Score=64.39 Aligned_cols=103 Identities=20% Similarity=0.442 Sum_probs=76.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC---CCcEEEEecCCcc------hhhccC-----HHHHHHHHHHHHHCCcEEEcCCeE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFT-----PSLAQRYEQLYQQNGVKFVKGASI 281 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~------~~~~~~-----~~~~~~~~~~l~~~GV~i~~~~~v 281 (497)
..+++|||.|..|.-+...+.+. -.++|++...+++ +.+.+. +++.-.-.++.+++||+++.+..+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46799999999999999988874 3468887655432 111121 122223356789999999999999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcCCCcchh
Q 010917 282 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 322 (497)
Q Consensus 282 ~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p~~~~~~ 322 (497)
..|+.. .+ .|+.++|.++.+|.+|+|||..|......
T Consensus 83 ~~idr~--~k--~V~t~~g~~~~YDkLilATGS~pfi~PiP 119 (793)
T COG1251 83 IQIDRA--NK--VVTTDAGRTVSYDKLIIATGSYPFILPIP 119 (793)
T ss_pred EEeccC--cc--eEEccCCcEeecceeEEecCccccccCCC
Confidence 999854 32 57889999999999999999999765443
No 442
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.96 E-value=0.00098 Score=64.75 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=32.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 97 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~ 97 (497)
+.+|+|||||.+|+++|..|.++|+ +++|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeeccc
Confidence 4699999999999999999999999 8999999654
No 443
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.95 E-value=0.0079 Score=61.48 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHCCcEEEcCCeEEEEEeCC-CCcEEEEEeCC-CcEEEcCEEEEecc-CcCCCcchhh
Q 010917 260 LAQRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIG-AKPTVSPFER 323 (497)
Q Consensus 260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~~~v~~v~~~~-g~~i~~D~vv~a~G-~~p~~~~~~~ 323 (497)
+.+.+.+.+++.|+++++++.++++..++ ++++..+...+ +.++.++.||+|+| +..|.+++..
T Consensus 125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 34455566678899999999999987643 46676666543 35799999999999 4555555554
No 444
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.93 E-value=0.01 Score=62.98 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=37.8
Q ss_pred HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 315 (497)
Q Consensus 264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~ 315 (497)
+.+.+++.||+++.++.++++..+ ++++.++.. .+|+ .+.++.||+|+|-.
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 344456678999999999998754 577766543 3564 58999999999964
No 445
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.00086 Score=65.87 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=31.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...++|||||||.||..||...++.|. +-+|+..+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga---~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGA---RTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCC---ceEEeeccc
Confidence 457899999999999999999999986 677777654
No 446
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0014 Score=64.73 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=35.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
....+|+|||+|.|||.||+.|.+.|+ +|+|+|..+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcC
Confidence 456899999999999999999999999 799999988654
No 447
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.84 E-value=0.0013 Score=69.64 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEecc-CcCCCcchhh
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER 323 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D-~vv~a~G-~~p~~~~~~~ 323 (497)
...+...+.+..++.|++|++++.++++..+++++|++|... +++ ++.+. .||+|+| +.-|.+++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 345556667777888999999999999886656788776553 333 46776 4777765 4555555554
No 448
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.83 E-value=0.0031 Score=62.28 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=55.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc------cCHH------HHHHHHHHHHHCCcEEEcCCeEEE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN 283 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------~~~~------~~~~~~~~l~~~GV~i~~~~~v~~ 283 (497)
.++++|||||..|++.|..|++.|.+|+++++.+.+..+. |+.. +...+.+.-...+|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 5789999999999999999999999999999998776541 1111 223344444556899999999999
Q ss_pred EEe
Q 010917 284 LEA 286 (497)
Q Consensus 284 i~~ 286 (497)
++.
T Consensus 204 v~G 206 (622)
T COG1148 204 VSG 206 (622)
T ss_pred ecc
Confidence 864
No 449
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0087 Score=61.48 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=54.4
Q ss_pred CcEEEEecCCcchhhccCH-HHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEeccCcC
Q 010917 240 LDTTIIFPENHLLQRLFTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 316 (497)
Q Consensus 240 ~~Vtlv~~~~~~~~~~~~~-~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g~~i~~D~vv~a~G~~p 316 (497)
..-.+..+.+..+ || .+...+....++.|..++.+..|+++... +++..+|.+.-|. |++..+|-|+|+-.
T Consensus 172 v~g~Ly~P~DG~~----DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 172 VYGGLYSPGDGVM----DPAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGS-IETECVVNAAGVWA 243 (856)
T ss_pred heeeeecCCCccc----CHHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcc-eecceEEechhHHH
Confidence 3445677777543 44 45677788889999999999999999864 4444478888885 99999999999865
No 450
>PLN02985 squalene monooxygenase
Probab=96.80 E-value=0.015 Score=60.54 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=30.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
..+|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 347999999999999999999999999999976
No 451
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.79 E-value=0.0049 Score=58.03 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=32.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
...+|+|||+|.|||-||.+|+.+|. +|+++|.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCc---eEEEEcccc
Confidence 35799999999999999999999998 899999986
No 452
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.78 E-value=0.016 Score=61.58 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCcC
Q 010917 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 316 (497)
Q Consensus 263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~p 316 (497)
.+.+.+++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|+|--.
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 34445567889999999999987554477877754 3554 688999999999643
No 453
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.78 E-value=0.0011 Score=64.07 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHCCcEEEcCCeEEEEEe-CCCCcEEEEEeCC--Cc----EEEcCEEEEeccCcCCCcchhhcCC
Q 010917 260 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLED--GS----TIDADTIVIGIGAKPTVSPFERVGL 326 (497)
Q Consensus 260 ~~~~~~~~l~~~GV~i~~~~~v~~i~~-~~~~~v~~v~~~~--g~----~i~~D~vv~a~G~~p~~~~~~~~gl 326 (497)
...++...++..|++++++++|++|.. .+++++.+|++.+ +. .+.++.||+|.|.--...+|..+|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 445666666666999999999999943 2466777776643 33 5678999999997655467776666
No 454
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.77 E-value=0.0047 Score=56.58 Aligned_cols=100 Identities=18% Similarity=0.296 Sum_probs=65.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhc------------------------------------------
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------------ 255 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~------------------------------------------ 255 (497)
+|+|||+|..|+-+|..|+..|.+||+++++..+..+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 58999999999999999999999999999873222110
Q ss_pred -------------------c-CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEeccC
Q 010917 256 -------------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGA 314 (497)
Q Consensus 256 -------------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~~D~vv~a~G~ 314 (497)
. .+.++ .+.+.| ....++.++++|+++...++. -.+++++| ....+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgms-alak~L-AtdL~V~~~~rVt~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMS-ALAKFL-ATDLTVVLETRVTEVARTDND--WTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchH-HHHHHH-hccchhhhhhhhhhheecCCe--eEEEecCCCcccccceEEEecCC
Confidence 0 01111 122222 234667778888888755333 35777565 46889999999865
Q ss_pred cCCCcch
Q 010917 315 KPTVSPF 321 (497)
Q Consensus 315 ~p~~~~~ 321 (497)
-.-..++
T Consensus 159 PQ~~~LL 165 (331)
T COG3380 159 PQTATLL 165 (331)
T ss_pred Ccchhhc
Confidence 3333344
No 455
>PRK08275 putative oxidoreductase; Provisional
Probab=96.77 E-value=0.019 Score=60.64 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCcC
Q 010917 262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 316 (497)
Q Consensus 262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~p 316 (497)
..+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|+|-..
T Consensus 141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 141 KVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 445555677899999999999987644567766653 3554 588999999999754
No 456
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.76 E-value=0.015 Score=61.83 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=33.9
Q ss_pred CcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccCc
Q 010917 272 GVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 315 (497)
Q Consensus 272 GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~~ 315 (497)
||+++.++.++++..++++++.++... +|+ .+.++.||+|||--
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 799999999998875545677777653 443 58899999999863
No 457
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=96.75 E-value=0.0058 Score=48.77 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=24.7
Q ss_pred CcEEEEEEECCEEEEEEeecCChHHhhHHHHHHh
Q 010917 431 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 464 (497)
Q Consensus 431 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 464 (497)
.|-++||+++++|+|+++ .|--..+...|++|.
T Consensus 99 ~kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~ 131 (133)
T PF14721_consen 99 GKGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA 131 (133)
T ss_dssp SEEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred CceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence 345789999999999997 666677888888874
No 458
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.73 E-value=0.02 Score=61.14 Aligned_cols=54 Identities=24% Similarity=0.215 Sum_probs=38.3
Q ss_pred HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917 262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 315 (497)
Q Consensus 262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~ 315 (497)
..+.+..++.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|+|--
T Consensus 170 ~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 170 HTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 334444566788888888888876534677777654 3554 67899999999753
No 459
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.73 E-value=0.0018 Score=68.16 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEeccC-cCCCcchhh
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIGA-KPTVSPFER 323 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~D-~vv~a~G~-~p~~~~~~~ 323 (497)
+..+...+.+.+++.|+++++++.++++..+ ++++.+|... +|+ ++.++ .||+|+|- .-|.++++.
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~~ 277 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRKR 277 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHHH
Confidence 4566677777788899999999999998754 5777776553 343 46774 67777764 444444443
No 460
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0064 Score=59.99 Aligned_cols=32 Identities=41% Similarity=0.498 Sum_probs=28.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
-.|+|||||..|+|.|.+.++.|.+.++++..
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 47999999999999999999999998887655
No 461
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.69 E-value=0.015 Score=60.56 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=30.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
-.|+|||||.+|+-+|..|+++|.+|.|+++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 46999999999999999999999999999977
No 462
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.68 E-value=0.017 Score=61.40 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=33.0
Q ss_pred ccCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCC
Q 010917 214 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 249 (497)
Q Consensus 214 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 249 (497)
.+..+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456789999999999999999999999999999864
No 463
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.67 E-value=0.02 Score=58.46 Aligned_cols=54 Identities=9% Similarity=0.228 Sum_probs=38.1
Q ss_pred HHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEE-eCCCc--EEEcCEEEEeccCc
Q 010917 261 AQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK 315 (497)
Q Consensus 261 ~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~-~~~g~--~i~~D~vv~a~G~~ 315 (497)
.+.+.+.+++ .||++++++.++++..+ ++++.++. ..+++ .+.++.||+|+|--
T Consensus 131 ~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 131 EKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 3344545554 59999999999998653 56666643 33444 58999999999964
No 464
>PRK12839 hypothetical protein; Provisional
Probab=96.66 E-value=0.0023 Score=67.46 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC--CCc-E-EEcCEEEEeccCc-CCCcchhh
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE--DGS-T-IDADTIVIGIGAK-PTVSPFER 323 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~--~g~-~-i~~D~vv~a~G~~-p~~~~~~~ 323 (497)
+..+...+.+..++.|++++.++.++++..++++++.+|... +++ . ..++.||+|+|-- -|.+++..
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~~ 284 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRKE 284 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHHH
Confidence 445666677778889999999999999875556788877543 443 2 3458899998654 44444433
No 465
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.66 E-value=0.02 Score=61.35 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=37.3
Q ss_pred HHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccCc
Q 010917 266 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 315 (497)
Q Consensus 266 ~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~~ 315 (497)
+.+++.||+++.++.++++..+ ++++.++... +|+ .+.++.||+|+|--
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 3456778999999999998753 5777777653 453 68999999999963
No 466
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.65 E-value=0.018 Score=60.84 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=37.7
Q ss_pred HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEeccC
Q 010917 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA 314 (497)
Q Consensus 263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~~D~vv~a~G~ 314 (497)
.+.+.+.+.||+++.++.++++..+ +|++.++... +++ .+.++.||+|+|-
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 3444455678999999999988754 6788877653 332 5789999999994
No 467
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0057 Score=57.92 Aligned_cols=100 Identities=27% Similarity=0.407 Sum_probs=77.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC--Ccc-----------hhhccCHHHHHHHHHHHHHCCcEEEcCCeEE
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 282 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 282 (497)
+-.|+|||||+.|...|-+.++.|.+.-++..+ ..+ .+...++++...+++..++..|+++...+.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 457999999999999999999988764433111 000 1123567889999999999999999988888
Q ss_pred EEEeCC-CCcEEEEEeCCCcEEEcCEEEEeccCc
Q 010917 283 NLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAK 315 (497)
Q Consensus 283 ~i~~~~-~~~v~~v~~~~g~~i~~D~vv~a~G~~ 315 (497)
++++.. .+....|++.+|-.+++..+|+++|.+
T Consensus 291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 887632 344568999999999999999999975
No 468
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.60 E-value=0.031 Score=59.89 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=69.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHhC-CCcEEEEecCCcchhh----------------------------------------
Q 010917 216 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR---------------------------------------- 254 (497)
Q Consensus 216 ~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~---------------------------------------- 254 (497)
.-+|+|||+|+.|+-+|..|+++ |.+|+|+++.+.....
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 45799999999999999999995 9999999977221100
Q ss_pred -------------------------ccC-HHHHHHHHHHHHHCC--cEEEcCCeEEEEEeCCCC-cEEEEEeC------C
Q 010917 255 -------------------------LFT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG-RVAAVKLE------D 299 (497)
Q Consensus 255 -------------------------~~~-~~~~~~~~~~l~~~G--V~i~~~~~v~~i~~~~~~-~v~~v~~~------~ 299 (497)
.+. ..+.+.+.+.+.+.| +++..++++++++.++++ .-+.+++. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 000 013344556666665 578889999999765322 21234443 3
Q ss_pred C--cEEEcCEEEEeccCcC
Q 010917 300 G--STIDADTIVIGIGAKP 316 (497)
Q Consensus 300 g--~~i~~D~vv~a~G~~p 316 (497)
| +++.+|+||-|-|.+.
T Consensus 192 g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARS 210 (634)
T ss_pred CceEEEEeCEEEECCCCch
Confidence 5 5799999999999753
No 469
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.60 E-value=0.027 Score=59.73 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=38.1
Q ss_pred HHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917 264 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 315 (497)
Q Consensus 264 ~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~ 315 (497)
+.+...+.||+++.++.++++..++++++.++.. .+|+ .+.++.||+|||--
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 3344456788999999988887544678877754 3554 57899999999964
No 470
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.60 E-value=0.0029 Score=59.32 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
++|++|||+|.+|+..|..|++.|. +|.|||+.++..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCC
Confidence 3799999999999999999999998 899999998864
No 471
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.60 E-value=0.018 Score=59.83 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=40.3
Q ss_pred HHHHHHHHHHH-CCcEEEcCCeEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEeccCcCC
Q 010917 260 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPT 317 (497)
Q Consensus 260 ~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~~D~vv~a~G~~p~ 317 (497)
+...+.+.+++ .||+++.++.++++..+ ++.+.++...+ + ..+.++.||+|+|-...
T Consensus 130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 130 VITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 33445555565 68999999999998753 56666665543 3 36899999999997543
No 472
>PRK02106 choline dehydrogenase; Validated
Probab=96.59 E-value=0.0026 Score=67.23 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=46.5
Q ss_pred HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEeccCcCCCcchhhcCCcc
Q 010917 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNS 328 (497)
Q Consensus 263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~~D~vv~a~G~~p~~~~~~~~gl~~ 328 (497)
++....+..++++++++.|.+|.-+ ++++.+|+..+. ..+.++.||+|.|.--...+|..+|+-.
T Consensus 206 ~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~ 274 (560)
T PRK02106 206 YLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP 274 (560)
T ss_pred hhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence 3444445678999999999999865 566777776432 2468999999999765556666666643
No 473
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.57 E-value=0.029 Score=59.76 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=29.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhC--CCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~ 248 (497)
-.|+|||+|..|+-+|..+++. |.+|.|+++.
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~ 45 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA 45 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 3699999999999999999998 9999998865
No 474
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.0098 Score=61.15 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=31.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 010917 59 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 96 (497)
Q Consensus 59 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~ 96 (497)
+.++|+|+|+|..|+++|..|++.|+ +|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~---~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA---KVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 45899999999999999999999998 899998864
No 475
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.49 E-value=0.03 Score=58.93 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=38.1
Q ss_pred HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 315 (497)
Q Consensus 263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~ 315 (497)
.+.+.+++.||++++++.++++..++++++.++.. .+|+ .+.++.||+|+|--
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 34455566789999999999987544444666543 4554 58899999999964
No 476
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.49 E-value=0.0098 Score=59.75 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=31.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCC
Q 010917 60 NREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEA 96 (497)
Q Consensus 60 ~~~VvIIGgG~AGl~aA~~L~~~g-~~~~~V~lie~~~ 96 (497)
+++.=|||+|.|+|+||..|.+.+ .+..+|+++|+.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~ 39 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELD 39 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCC
Confidence 467889999999999999999865 3566899999876
No 477
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.49 E-value=0.0043 Score=60.06 Aligned_cols=104 Identities=21% Similarity=0.254 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 136 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (497)
..++.|.|||+|+-|-..|..|.++-. ...+|.-+=.+.+ . +.+ + .+..+ .+...
T Consensus 345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~---n---m~k--i-----LPeyl-----------s~wt~ 400 (659)
T KOG1346|consen 345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY---N---MEK--I-----LPEYL-----------SQWTI 400 (659)
T ss_pred hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC---C---hhh--h-----hHHHH-----------HHHHH
Confidence 456899999999999999999988532 1223322222211 0 000 0 01111 12234
Q ss_pred hHHHHcCcEEEeCCcEEEEecCCC--EEEECCCcEEEeccEEeccCCCCCc
Q 010917 137 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 185 (497)
Q Consensus 137 ~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lvlAtG~~~~~ 185 (497)
+-+++.||+++.+..|.++..... .+.+.||.++..|.+|+|+|..|+.
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 456778999999988887765443 6788999999999999999998873
No 478
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.48 E-value=0.013 Score=60.34 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=74.9
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHH
Q 010917 62 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 141 (497)
Q Consensus 62 ~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (497)
+|+|||.|++|+++|+.|+++|+ +|+++|+++...+ ......+++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~---~V~~~D~~~~~~~--------------------------------~~~~~~l~~ 46 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW---EVVVSDRNDSPEL--------------------------------LERQQELEQ 46 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC---EEEEECCCCchhh--------------------------------HHHHHHHHH
Confidence 69999999999999999999998 8999998754210 011234566
Q ss_pred cCcEEEeCCcEEEEecCCCEEEECCCcEEEeccEEeccCCCCCcCCCCCCCCCCcEEEecCHHHHHHHHHhhccCCeEEE
Q 010917 142 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV 221 (497)
Q Consensus 142 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lvlAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV 221 (497)
.|+.+..+... +.+...... -.+|.||+..|..+.. |...-....++..+.. .+.+.......+.|.|
T Consensus 47 ~gi~~~~g~~~---~~~~~~~~~-----~~~d~vv~s~gi~~~~-~~~~~a~~~~i~v~~~---~~~~~~~~~~~~~I~V 114 (459)
T PRK02705 47 EGITVKLGKPL---ELESFQPWL-----DQPDLVVVSPGIPWDH-PTLVELRERGIEVIGE---IELAWRALKHIPWVGI 114 (459)
T ss_pred cCCEEEECCcc---chhhhhHHh-----hcCCEEEECCCCCCCC-HHHHHHHHcCCcEEEh---HHHHHHhhcCCCEEEE
Confidence 78888776422 111100000 2478899988876542 3211111123333322 2222222223344555
Q ss_pred EcC-C--HHHHHHHHHHHhCCCcEEE
Q 010917 222 VGG-G--YIGMEVAAAAVGWKLDTTI 244 (497)
Q Consensus 222 vG~-G--~~g~e~A~~l~~~g~~Vtl 244 (497)
=|+ | -+.--++..|...|.+...
T Consensus 115 TGT~GKTTTt~ml~~iL~~~g~~~~~ 140 (459)
T PRK02705 115 TGTNGKTTVTALLAHILQAAGLNAPA 140 (459)
T ss_pred eCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 553 2 2333445566667766554
No 479
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.48 E-value=0.035 Score=59.30 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=37.7
Q ss_pred HHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEeccCc
Q 010917 263 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 315 (497)
Q Consensus 263 ~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~~D~vv~a~G~~ 315 (497)
.+.+...+.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|+|--
T Consensus 192 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 192 TLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 33444556788998888888866544577777654 3453 67899999999864
No 480
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.46 E-value=0.033 Score=59.03 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEeccCcC
Q 010917 262 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP 316 (497)
Q Consensus 262 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~~D~vv~a~G~~p 316 (497)
..+.+.+++.||+++.++.+.++... ++++.++. ..+|+ .+.++.||+|+|-..
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 34555567789999999999998653 56666554 34554 589999999999753
No 481
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.45 E-value=0.0039 Score=65.62 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEEEEeC-CCc--EEEc-CEEEEeccCc-CCCcchhh
Q 010917 257 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGAK-PTVSPFER 323 (497)
Q Consensus 257 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~~-D~vv~a~G~~-p~~~~~~~ 323 (497)
+..+...+.+.+++.||++++++.++++.. ++++|.+|... +|. .+.+ ..||+|+|-- -|.++.++
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~~ 286 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRWK 286 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHHH
Confidence 567777888888999999999999999875 36788777543 343 3555 5788888754 44344443
No 482
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.44 E-value=0.0053 Score=44.62 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.7
Q ss_pred EEcCCHHHHHHHHHHHhCCCcEEEEecCCcchh
Q 010917 221 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 253 (497)
Q Consensus 221 VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 253 (497)
|||+|.+|+-+|..|++.|.+|+|+++.+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999987654
No 483
>PLN03000 amine oxidase
Probab=96.44 E-value=0.0042 Score=67.24 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 99 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~~ 99 (497)
...++|+|||||++|+.||+.|++.|+ +|+|+|+.+...
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG 220 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG 220 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence 346899999999999999999999998 899999987643
No 484
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.43 E-value=0.033 Score=58.11 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=30.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
-.|+|||||.+|+-+|..|+++|.+|.|+++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999999999999999999999999976
No 485
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.43 E-value=0.046 Score=58.13 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
-.|+|||+|..|+-.|..+++.|.+|+|++..
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 46999999999999999999999999998875
No 486
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.04 Score=55.08 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=26.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCC---cEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKL---DTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~---~Vtlv~~~ 248 (497)
.+|+|||+|++|+.+|..|.+.-. .++++++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~ 36 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR 36 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc
Confidence 479999999999999999987531 38888776
No 487
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.35 E-value=0.015 Score=59.88 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=58.9
Q ss_pred cCCeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCcchhhccCHHHHHHHHHHHHHCCcEEEcCCeEEEEEeCCCCcEEE
Q 010917 215 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 294 (497)
Q Consensus 215 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~v~~ 294 (497)
.+++++|+|+|.+|+.+|..|++.|.+|+++++... +.+ ....+.+.+.|++++.+....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence 478999999999999999999999999999977541 112 2223446677888765543210
Q ss_pred EEeCCCcEEEcCEEEEeccCcCCCcch
Q 010917 295 VKLEDGSTIDADTIVIGIGAKPTVSPF 321 (497)
Q Consensus 295 v~~~~g~~i~~D~vv~a~G~~p~~~~~ 321 (497)
..-.+|.||.++|..|+.+.+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 112479999999998887654
No 488
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.28 E-value=0.0045 Score=64.22 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=44.4
Q ss_pred HHHHHCCcEEEcCCeEEEEEeCCC--CcEEEEEeC---CCc--EEEcCEEEEeccCcCCCcchhhcCCc
Q 010917 266 QLYQQNGVKFVKGASIKNLEAGSD--GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN 327 (497)
Q Consensus 266 ~~l~~~GV~i~~~~~v~~i~~~~~--~~v~~v~~~---~g~--~i~~D~vv~a~G~~p~~~~~~~~gl~ 327 (497)
+.++..++++++++.|.+|..+++ +++..+... +|+ ++.|+.||+|.|..-+..+|-.++..
T Consensus 222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~ 290 (544)
T TIGR02462 222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG 290 (544)
T ss_pred hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence 334456699999999999986544 356666443 343 58999999999987776776655543
No 489
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.27 E-value=0.064 Score=56.98 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=41.1
Q ss_pred HHHHHHHHHHCCcEEEcCCeEEEEEeCCC---CcEEEEEe---CCCc--EEEcCEEEEeccCcC
Q 010917 261 AQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP 316 (497)
Q Consensus 261 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~---~~v~~v~~---~~g~--~i~~D~vv~a~G~~p 316 (497)
...+.+.+++.||+++.++.+.++...++ +++.++.. .+|+ .+.++.||+|+|-..
T Consensus 143 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 143 LQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 34455666778999999999999875432 67777654 3554 578999999999754
No 490
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.27 E-value=0.048 Score=58.38 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
-.|+|||+|..|+-+|..+++.|.+|.+++..
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 36999999999999999999999999998765
No 491
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.24 E-value=0.047 Score=57.88 Aligned_cols=34 Identities=38% Similarity=0.456 Sum_probs=30.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 250 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 250 (497)
-.|+|||+|..|+-.|..+++.|.+|.|+++.+.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4699999999999999999999999999987754
No 492
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.22 E-value=0.053 Score=57.56 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=28.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC---CcEEEEecC
Q 010917 218 KVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPE 248 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~ 248 (497)
.|+|||+|..|+-.|..+++.| .+|+|+++.
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~ 40 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT 40 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 5999999999999999999998 799998865
No 493
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.17 E-value=0.055 Score=57.52 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=29.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
..|+|||+|..|+-.|..+++.|.+|.|++..
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 36999999999999999999999999999843
No 494
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.15 E-value=0.022 Score=55.62 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=31.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecCCc
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 250 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 250 (497)
.+|+|||||..|+-.|.+|.+.|.+|.+++.+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5799999999999999999999999999987633
No 495
>PLN02976 amine oxidase
Probab=96.13 E-value=0.0073 Score=68.10 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 58 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 58 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
...++|+|||||++|+++|+.|.+.|+ +|+|+|+.+..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~v 728 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRI 728 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCC
Confidence 345899999999999999999999998 89999998654
No 496
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.10 E-value=0.015 Score=63.72 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhC--CCcEEEEecCCc
Q 010917 218 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH 250 (497)
Q Consensus 218 ~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~ 250 (497)
+|+|||+|+.|+-+|..|++. |.+|+|+++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999998864
No 497
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.04 E-value=0.0084 Score=57.66 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=34.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 010917 57 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 98 (497)
Q Consensus 57 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~~V~lie~~~~~ 98 (497)
.....||+|||||.+|-+.|+.|++.|. +|.+||++-..
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~E 80 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLSE 80 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCc---EEEEEeccccc
Confidence 4456899999999999999999999987 89999998543
No 498
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=96.02 E-value=0.014 Score=47.02 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=44.0
Q ss_pred cEEEEEEE--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh--hhhcCCCcHHHHHHHHH
Q 010917 432 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIAR 488 (497)
Q Consensus 432 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 488 (497)
.+.|+.++ +++|+|+++++.++.++... ..+++++.+++. ..+..|||++|+++.|+
T Consensus 49 g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 49 GFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp EEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred eeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 46677665 48999999988878776544 556789988872 33589999999999986
No 499
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.98 E-value=0.05 Score=56.76 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=26.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
..|+|||+|..|+-.|..+++ |.+|.+++..
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~ 34 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK 34 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence 469999999999999999876 8899988765
No 500
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.98 E-value=0.04 Score=57.97 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=26.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHhCCCcEEEEecC
Q 010917 217 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 248 (497)
Q Consensus 217 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 248 (497)
-.|+|||+|..|+-+|..++ .|.+|.|++..
T Consensus 10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~ 40 (553)
T PRK07395 10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKD 40 (553)
T ss_pred CCEEEECccHHHHHHHHHhh-cCCCEEEEEcc
Confidence 46999999999999998886 48899998865
Done!