Query 010918
Match_columns 497
No_of_seqs 150 out of 193
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:02:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2676 Uncharacterized conser 100.0 6.2E-67 1.3E-71 526.3 17.3 421 28-496 23-475 (478)
2 PF09759 Atx10homo_assoc: Spin 100.0 8E-41 1.7E-45 289.2 9.2 102 391-493 1-102 (102)
3 PLN03200 cellulose synthase-in 98.3 6.4E-05 1.4E-09 92.6 23.3 308 28-460 206-528 (2102)
4 PLN03200 cellulose synthase-in 98.1 0.00031 6.7E-09 86.9 23.5 353 69-478 417-795 (2102)
5 PF05804 KAP: Kinesin-associat 98.0 0.0019 4.2E-08 73.4 24.7 371 28-468 266-681 (708)
6 cd00020 ARM Armadillo/beta-cat 97.1 0.0016 3.4E-08 55.2 7.3 69 391-461 22-90 (120)
7 cd00020 ARM Armadillo/beta-cat 97.1 0.0018 3.9E-08 54.9 7.2 112 52-173 7-118 (120)
8 PF00514 Arm: Armadillo/beta-c 96.3 0.0027 5.9E-08 45.7 2.4 40 407-448 1-40 (41)
9 KOG0166 Karyopherin (importin) 96.2 0.41 8.9E-06 52.8 19.5 321 16-468 68-410 (514)
10 PF04826 Arm_2: Armadillo-like 95.9 0.019 4E-07 58.0 7.1 88 345-463 9-96 (254)
11 smart00185 ARM Armadillo/beta- 94.3 0.044 9.5E-07 38.3 3.0 40 408-449 2-41 (41)
12 PF09759 Atx10homo_assoc: Spin 94.1 0.11 2.4E-06 45.6 5.7 65 74-143 4-69 (102)
13 KOG0166 Karyopherin (importin) 93.5 0.35 7.6E-06 53.4 9.2 174 12-199 192-375 (514)
14 KOG4199 Uncharacterized conser 91.8 10 0.00022 40.3 16.7 132 315-483 306-450 (461)
15 PF05804 KAP: Kinesin-associat 90.5 3.7 8E-05 47.4 13.3 165 14-193 290-458 (708)
16 PF03224 V-ATPase_H_N: V-ATPas 88.8 0.31 6.7E-06 50.1 2.9 186 14-208 105-300 (312)
17 KOG4500 Rho/Rac GTPase guanine 87.6 2 4.4E-05 46.7 8.0 95 342-462 77-178 (604)
18 KOG4500 Rho/Rac GTPase guanine 87.5 3.8 8.3E-05 44.7 9.9 106 38-145 69-177 (604)
19 PF04826 Arm_2: Armadillo-like 87.0 4 8.6E-05 41.3 9.5 162 11-188 9-175 (254)
20 KOG2160 Armadillo/beta-catenin 85.1 2.6 5.7E-05 44.4 7.2 72 390-462 138-209 (342)
21 COG5064 SRP1 Karyopherin (impo 84.9 4.4 9.5E-05 43.0 8.6 178 14-200 199-381 (526)
22 PF10508 Proteasom_PSMB: Prote 80.6 98 0.0021 34.3 21.9 132 31-174 97-230 (503)
23 PF01365 RYDR_ITPR: RIH domain 80.0 2.5 5.4E-05 40.8 4.5 59 88-146 33-103 (207)
24 KOG1048 Neural adherens juncti 76.9 3 6.5E-05 47.9 4.6 72 388-461 245-318 (717)
25 KOG4199 Uncharacterized conser 74.2 1.2E+02 0.0026 32.7 14.9 53 406-458 316-368 (461)
26 KOG4646 Uncharacterized conser 73.9 5.8 0.00013 37.2 4.8 66 391-460 32-97 (173)
27 KOG1293 Proteins containing ar 72.7 1.9E+02 0.004 33.4 19.8 92 340-461 453-545 (678)
28 PF13646 HEAT_2: HEAT repeats; 71.3 1.7 3.6E-05 35.2 0.6 59 387-460 11-69 (88)
29 PF00514 Arm: Armadillo/beta-c 70.4 11 0.00024 26.7 4.8 40 88-133 2-41 (41)
30 KOG0946 ER-Golgi vesicle-tethe 69.8 10 0.00023 44.0 6.6 127 30-159 185-328 (970)
31 PF02985 HEAT: HEAT repeat; I 65.9 3.3 7.3E-05 27.9 1.1 29 420-450 2-30 (31)
32 KOG2122 Beta-catenin-binding p 62.1 75 0.0016 39.9 11.7 82 400-483 554-636 (2195)
33 PF08454 RIH_assoc: RyR and IP 56.1 18 0.00039 32.0 4.3 59 51-109 42-107 (109)
34 KOG1517 Guanine nucleotide bin 55.2 11 0.00025 45.0 3.6 66 391-457 572-637 (1387)
35 smart00185 ARM Armadillo/beta- 49.6 40 0.00086 23.0 4.5 38 89-132 3-40 (41)
36 PF10508 Proteasom_PSMB: Prote 48.0 4.2E+02 0.009 29.4 14.3 74 386-462 401-481 (503)
37 KOG2160 Armadillo/beta-catenin 46.2 48 0.001 35.2 6.2 118 67-192 94-213 (342)
38 KOG0946 ER-Golgi vesicle-tethe 44.7 2.2E+02 0.0047 33.8 11.4 145 272-460 103-252 (970)
39 KOG1048 Neural adherens juncti 44.6 1.3E+02 0.0028 35.1 9.7 111 16-132 571-683 (717)
40 PF06371 Drf_GBD: Diaphanous G 41.8 66 0.0014 29.8 6.0 60 67-132 127-186 (187)
41 PF03224 V-ATPase_H_N: V-ATPas 36.3 1.4E+02 0.003 30.7 7.8 125 23-155 69-200 (312)
42 PF08454 RIH_assoc: RyR and IP 36.0 1.1E+02 0.0024 27.0 6.1 86 71-156 8-106 (109)
43 cd03572 ENTH_epsin_related ENT 35.9 1.7E+02 0.0037 26.6 7.3 78 52-132 34-117 (122)
44 KOG3533 Inositol 1,4,5-trispho 35.4 1.3E+02 0.0029 37.5 8.1 76 71-146 1202-1285(2706)
45 PF10165 Ric8: Guanine nucleot 34.9 1.3E+02 0.0028 32.9 7.8 80 31-110 1-86 (446)
46 KOG2122 Beta-catenin-binding p 32.2 1.9E+02 0.0041 36.7 8.8 156 28-191 407-574 (2195)
47 PF15565 Imm16: Immunity prote 32.1 57 0.0012 29.0 3.6 83 145-231 16-105 (106)
48 PF11864 DUF3384: Domain of un 30.4 7.5E+02 0.016 27.0 14.6 76 51-135 212-287 (464)
49 PF07814 WAPL: Wings apart-lik 29.6 57 0.0012 34.5 3.8 72 67-141 233-307 (361)
50 KOG4224 Armadillo repeat prote 29.6 4.9E+02 0.011 28.5 10.4 89 76-172 146-234 (550)
51 PF01365 RYDR_ITPR: RIH domain 27.4 53 0.0011 31.6 2.9 28 70-97 75-102 (207)
52 PF14483 Cut8_M: Cut8 dimerisa 23.7 61 0.0013 23.5 1.9 25 393-417 12-36 (38)
53 PF08045 CDC14: Cell division 23.2 1.7E+02 0.0037 29.9 5.7 46 68-113 146-191 (257)
54 PF13513 HEAT_EZ: HEAT-like re 23.1 97 0.0021 22.9 3.1 53 392-447 3-55 (55)
55 smart00580 PUG domain in prote 22.5 1E+02 0.0022 24.3 3.1 36 394-429 4-45 (58)
56 KOG2734 Uncharacterized conser 21.2 6.2E+02 0.014 28.3 9.6 126 315-463 144-269 (536)
No 1
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.2e-67 Score=526.33 Aligned_cols=421 Identities=19% Similarity=0.189 Sum_probs=341.2
Q ss_pred hHHHHHHHHHhcccccCCcccccccchHHHHHhhhcCCC-----------------CCcHHHHHHHHHHHHhhccccchh
Q 010918 28 LKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPH-----------------SSGCHYLLLSLKLLRNLCAGEITN 90 (497)
Q Consensus 28 ~~~~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il~~~s~-----------------~~~~~~l~~clR~LRNlCa~~~~N 90 (497)
+|-+-++|...||++..|++ |.+++|.++++++++.++ ++++|+++.|+ +|||+|..|..|
T Consensus 23 ~e~i~r~l~~~Fk~q~~r~~-a~rt~~~R~ld~lkk~~~~vsl~~~ss~P~qvenlA~slQlI~~~~-~LqN~~i~cfl~ 100 (478)
T KOG2676|consen 23 MELIRRGLAKGFKSQKARGD-AGRTLYSRFLDYLKKFTESVSLDSFSSLPWQVENLANSLQLIAGNS-PLQNEAIACFLM 100 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhh-hHHHHHHHHHHHHHHhccchhccccccCcHHHHHHHhHhhhhcccc-hhHHHHHHHHHh
Confidence 34444999999999999997 569999999999977544 57889999999 999999999999
Q ss_pred hhHHhhcchhHHHHH---HhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHhcCCCCCccCcee
Q 010918 91 QKSFIEQTGVGIVLR---VLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLC 167 (497)
Q Consensus 91 Q~~i~~~~~i~~~~~---ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~~~ 167 (497)
|++...++.+..-.. +++-....++...++|||++|||+|++..|+++|...|-+.||.+|..+.+|||++++.|..
T Consensus 101 ~ns~~~ldtp~~~vdlIll~~cl~~eq~~~lT~fr~~lQfL~nIasrne~~~s~~wi~~fs~~F~~d~nhPdK~iva~r~ 180 (478)
T KOG2676|consen 101 DNSDFFLDTPMNPVDLILLAQCLALEQALWLTLFRVDLQFLFNIASRNELCHSKSWIRLFSIIFDFDSNHPDKWIVALRE 180 (478)
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhhHHhhhHHHhcccCCCccchhhhhh
Confidence 999999999943332 33444556667789999999999999999999999999999999999999999999999999
Q ss_pred eeehhhccCCchhhHhhhcccchHHHHHHHHHHhhcCCcchhHHHHHHHHhHhcCcHHH-HHHhhhhcCCCcccCCCCCC
Q 010918 168 MVIYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQ-LFFKLSQVGASRNCEDSNSR 246 (497)
Q Consensus 168 MViytc~~~s~er~~eL~~~~~i~i~~e~v~~a~~~~~d~ewl~lli~~~~le~~~l~~-ly~~ls~~~~~~~~e~~~~~ 246 (497)
||+||.+ +.+|+++ .++. ..| .|+.||+.+|..||....++.+.++++++.. +|.++.
T Consensus 181 ~I~F~sl--~aeri~~-eeN~-~~I---~v~~ay~~~pkse~~~id~~~l~~kskel~tA~F~k~l-------------- 239 (478)
T KOG2676|consen 181 DIMFNSL--IAERILK-EENF-PNI---LVNVAYKIGPKSEYFLIDCMSLKIKSKELATAGFYKIL-------------- 239 (478)
T ss_pred hHHHHHH--HHHHHHh-hhcc-chh---hhhhhhccCCccceeehhhhhhhhccHHHHHhHHHHHh--------------
Confidence 9999999 7899998 5554 333 3678999999999999999999999999974 888863
Q ss_pred CCCCChhHhHHHHHHHHHhhccc----ccc-ccCchhH-HHHHHHHHhhhhhhhhhhcCCCCCCCCchhHHHHHhHHHHH
Q 010918 247 EGTFSSEQAFLLEIVSEIVNERI----EEI-IVPNDFA-LSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSIL 320 (497)
Q Consensus 247 ~~~~~~eqvtLL~ll~a~l~e~~----~di-~v~~~~a-~~l~~~F~~~a~~v~~~~~~~~~l~t~~~~~d~L~~sL~lL 320 (497)
|+||+|||.++...+.+.. .++ ++...+| .++-..|-..|..+..+... +.+ ...+...+++++
T Consensus 240 ----nqERvtLl~v~~~~~Ts~E~~~t~eisp~~lrha~~~i~~~f~~~c~~y~~~vs~--~~~----~~~~~l~~~~l~ 309 (478)
T KOG2676|consen 240 ----NQERVTLLCVGRQFATSLEECFTKEISPAGLRHANHFIEIVFLGVCLLYRDYVSY--DTT----ISLKNLDSSSLG 309 (478)
T ss_pred ----hhhhhHHHHHHHHHHhccchhhhhhcCHHHHHHHHhhhHHHHHhHHHhhhhhhcc--CCC----chhhhhhhhhHH
Confidence 8999999999999886443 445 3334444 34444444544443222211 111 112345789999
Q ss_pred HHHhhccCCCCCCCcchhhhHHHHhh-cccHHHHHHHhhhcCCChhhhhhhhcCCCC---CCCc-ccccccCCCcchhHH
Q 010918 321 RNICAREDPAGSSSVNRADLVDSLQS-HGLIEMFLSLLRDLEPPAIIRKAMRQGENQ---EGTS-AKSAKTCPYIGFRRD 395 (497)
Q Consensus 321 ~~Lc~~~~~~s~~~~~~~d~~~~L~~-~gLle~lI~LLr~l~~~~~i~k~~~~~~~~---~~~~-~~~~~~~~~~g~k~~ 395 (497)
+++|+++..+ .+..|++. .||++..+.|||..+.. ++++.+. +|.- ..........|+++|
T Consensus 310 d~lce~~v~~--------~lisyi~~l~~lLd~~i~LLr~~~v~------gkeT~ni~s~egcvr~el~i~nv~n~~esH 375 (478)
T KOG2676|consen 310 DMLCETSVPS--------SLISYIIHLLALLDKRIPLLRKTLVE------GKETYNISSMEGCVRQELYIANVGNKRESH 375 (478)
T ss_pred HHHHhcCCcH--------HHHHHHHHHHHHHHHhhHHHHHHhhc------ccceeeeccccchHHhhhhhhhhcccchHH
Confidence 9999987322 25678776 89999999999986532 1222221 1200 001123467899999
Q ss_pred HHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhcccCCCCCchhHhhc
Q 010918 396 LVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVPELTDL 475 (497)
Q Consensus 396 lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L~~~~~~~~~~L~~~ 475 (497)
++|+||++||+++++||+|||+||+++||++|+|||+|||||||+|+|+|+|+++|.+||++|++|++||++++++|+++
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~kme~q~~~~~daL~ka 455 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKMEPQTTTHSDALEKA 455 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcCCccccchHhHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCCCCceEEeeCCCC
Q 010918 476 GLKVEVDKNTRRAKLVNVPSK 496 (497)
Q Consensus 476 G~~v~id~~~gk~~l~~~~~~ 496 (497)
|++++|.+ +||++|+++..+
T Consensus 456 GFe~~i~k-ggKv~L~sk~~~ 475 (478)
T KOG2676|consen 456 GFESYINK-GGKVVLQSKTAK 475 (478)
T ss_pred CcEEEecC-CceEEEeecCCC
Confidence 99999998 799999988543
No 2
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=100.00 E-value=8e-41 Score=289.16 Aligned_cols=102 Identities=50% Similarity=0.865 Sum_probs=100.4
Q ss_pred chhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhcccCCCCCch
Q 010918 391 GFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVP 470 (497)
Q Consensus 391 g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L~~~~~~~~~ 470 (497)
|||+++||+||||||+|+.|||+||++||||+||+||+||++||||||||||||||||+||++||++|++|+++|+++++
T Consensus 1 g~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~~~~~~ 80 (102)
T PF09759_consen 1 GFKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQGVADNE 80 (102)
T ss_pred CcHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccCCcchH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCceEEEeCCCCceEEeeC
Q 010918 471 ELTDLGLKVEVDKNTRRAKLVNV 493 (497)
Q Consensus 471 ~L~~~G~~v~id~~~gk~~l~~~ 493 (497)
+|+++|++|++|++ ||++|++|
T Consensus 81 ~L~~~G~~v~~d~~-Gk~~l~~~ 102 (102)
T PF09759_consen 81 ELEELGLEVEIDKD-GKVRLKKK 102 (102)
T ss_pred HHHHcCCeEEEcCC-CeEeeecC
Confidence 99999999999995 99999986
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.31 E-value=6.4e-05 Score=92.65 Aligned_cols=308 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred hHHHHHHHHHhccc-ccCCcccccccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHH
Q 010918 28 LKDALEILIESSKT-TVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRV 106 (497)
Q Consensus 28 ~~~~l~~L~~~~k~-~~~R~~~a~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~l 106 (497)
-+++...|...... .++|..+......|.+.++|.+- .+...--.|.-+|+|+|.+++++...+++.|++..+.++
T Consensus 206 Q~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg---~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~l 282 (2102)
T PLN03200 206 QANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG---NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINA 282 (2102)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccC---CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH
Confidence 45677766555443 55777777778889999998642 222344566778999999999999999999999999998
Q ss_pred hcCCCC---CCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHh-cCCCCC-------ccCceeeeehhhcc
Q 010918 107 LRSPGV---NLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLA-GVRCQE-------TCDPLCMVIYTCCD 175 (497)
Q Consensus 107 l~~~~~---~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll-~~~d~k-------~~~~~~MViytc~~ 175 (497)
+..+.. ..+......|.+...|+|++.+- ..+.|.+ -.++ ..+|.. .+.|..|++ +
T Consensus 283 L~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~--------~~ll~~L-~~ll~s~rd~~~~ada~gALayll~l~----d 349 (2102)
T PLN03200 283 TVAPSKEFMQGEFAQALQENAMGALANICGGM--------SALILYL-GELSESPRSPAPIADTLGALAYALMVF----D 349 (2102)
T ss_pred HhCcchhhhccccchHHHHHHHHHHHHHhCCc--------hhhHHHH-HHhhcccchHHHHHHHHhhHHHHHHhc----C
Confidence 876542 22334556889999999999774 1122221 1111 111221 222323322 3
Q ss_pred CCchhhHhhhcccch-HHHHHHHHHHhhcCCcchhHHHHHHH--HhHhcCcHHHHHHhhhhcCCCcccCCCCCCCCCCCh
Q 010918 176 GSSGLFKELCGDKGL-AIMAEIVCTAASVGFKEDWFKFLVSR--TCVEEIHFPQLFFKLSQVGASRNCEDSNSREGTFSS 252 (497)
Q Consensus 176 ~s~er~~eL~~~~~i-~i~~e~v~~a~~~~~d~ewl~lli~~--~~le~~~l~~ly~~ls~~~~~~~~e~~~~~~~~~~~ 252 (497)
++.++.+ ...+.++ ..++.+++. ..+.. .....+.- .++.++.+.++
T Consensus 350 ~~~~~~~-~i~~~~v~~~LV~Llr~---k~p~~-vqe~V~eALasl~gN~~l~~~------------------------- 399 (2102)
T PLN03200 350 SSAESTR-AFDPTVIEQILVKLLKP---RDTKL-VQERIIEALASLYGNAYLSRK------------------------- 399 (2102)
T ss_pred Cchhhhh-hccccccHHHHHHHhCC---CCCch-hHHHHHHHHHHhcCChHHHHH-------------------------
Confidence 3333333 1111111 111222211 00111 01111100 00111111111
Q ss_pred hHhHHHHHHHHHhhccccccccCchhHHHHHHHHHhhhhhhhhhhcCCCCCCCCchhHHHHHhHHHHHHHHhhccCCCCC
Q 010918 253 EQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREDPAGS 332 (497)
Q Consensus 253 eqvtLL~ll~a~l~e~~~di~v~~~~a~~l~~~F~~~a~~v~~~~~~~~~l~t~~~~~d~L~~sL~lL~~Lc~~~~~~s~ 332 (497)
+.+.. -++ .+.+..+.. ..|+...+..-|+.+|..+
T Consensus 400 ------------L~~~d-aik-------~LV~LL~~~-------------------~~evQ~~Av~aL~~L~~~~----- 435 (2102)
T PLN03200 400 ------------LNHAE-AKK-------VLVGLITMA-------------------TADVQEELIRALSSLCCGK----- 435 (2102)
T ss_pred ------------HHhcc-chh-------hhhhhhccC-------------------CHHHHHHHHHHHHHHhCCC-----
Confidence 11000 000 011111100 0122223344556666311
Q ss_pred CCcchhhhHHHHhhcccHHHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhHHHHHHHHhhccCChhhHH
Q 010918 333 SSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQD 412 (497)
Q Consensus 333 ~~~~~~d~~~~L~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~~lvrli~nl~~~~~~~Qd 412 (497)
.+..+.+.+.|.+..++.+|+. +....++.-++.++|++-.+.+++.
T Consensus 436 -----~e~~~aIi~~ggIp~LV~LL~s----------------------------~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 436 -----GGLWEALGGREGVQLLISLLGL----------------------------SSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred -----HHHHHHHHHcCcHHHHHHHHcC----------------------------CCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1356778889999999999973 1125567778999999999999999
Q ss_pred HHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHh
Q 010918 413 EIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVAD 460 (497)
Q Consensus 413 ~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~ 460 (497)
.|.+.||||.+.+.=. ..++-++|.|.|+|-|++.+++.+|..|.+
T Consensus 483 aIieaGaIP~LV~LL~--s~~~~iqeeAawAL~NLa~~~~qir~iV~~ 528 (2102)
T PLN03200 483 AITAAGGIPPLVQLLE--TGSQKAKEDSATVLWNLCCHSEDIRACVES 528 (2102)
T ss_pred HHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 9999999999998754 557899999999999999998889998865
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.12 E-value=0.00031 Score=86.88 Aligned_cols=353 Identities=15% Similarity=0.164 Sum_probs=193.0
Q ss_pred cHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhch
Q 010918 69 GCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFP 148 (497)
Q Consensus 69 ~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP 148 (497)
.-+......++|+++|.++..+...|.+.+++..+.++|.... ..+.+.++..|+|++.+|.+++..|=.+-.=
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s------~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS------EQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 3467788899999999999999999999999999999998743 3577899999999999999888888777555
Q ss_pred hHHHHHhcCCCCCccCceeeeehhhccCCchhhHhhhcc-cchHHHHHHHHHHhhcCCcchhHHHHHHHHhHhcCcH---
Q 010918 149 DEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCGD-KGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHF--- 224 (497)
Q Consensus 149 ~~f~~ll~~~d~k~~~~~~MViytc~~~s~er~~eL~~~-~~i~i~~e~v~~a~~~~~d~ewl~lli~~~~le~~~l--- 224 (497)
..|..+++.++.++.--.+-.|+|+.-++ +....+... ..++-+++++...... -.+..-|-++... ..++-
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~--~q~~Aa~AL~nLi-~~~d~~~I 566 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPK--GQEIAAKTLTKLV-RTADAATI 566 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHH--HHHHHHHHHHHHH-hccchhHH
Confidence 55778899998887777788999988432 333443322 3455556665432110 0112233333221 11111
Q ss_pred HHHHHhhhhcCCCcccCCCCCCCCCCChhHhHHHHHHHHHhhccccc-----cccCchhHHHHHHHHHhhhhhhhhhhcC
Q 010918 225 PQLFFKLSQVGASRNCEDSNSREGTFSSEQAFLLEIVSEIVNERIEE-----IIVPNDFALSVLGIFTKSIGLVDFYARG 299 (497)
Q Consensus 225 ~~ly~~ls~~~~~~~~e~~~~~~~~~~~eqvtLL~ll~a~l~e~~~d-----i~v~~~~a~~l~~~F~~~a~~v~~~~~~ 299 (497)
+.+-.-|.. + ....+..-|+.+..+++-.+++ ...-.+-...+....+..
T Consensus 567 ~~Lv~LLls-------d--------d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg---------- 621 (2102)
T PLN03200 567 SQLTALLLG-------D--------LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS---------- 621 (2102)
T ss_pred HHHHHHhcC-------C--------ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC----------
Confidence 222221210 1 1344444566665554411110 000011111111111100
Q ss_pred CCCCCCCchhHHHHHhHHHHHHHHhhccCCCCCCCcchhhhHHHHhhcccHHHHHHHhhhcC----CC-----hhhhhhh
Q 010918 300 TPSLPTSSSAINVLGYSLSILRNICAREDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLE----PP-----AIIRKAM 370 (497)
Q Consensus 300 ~~~l~t~~~~~d~L~~sL~lL~~Lc~~~~~~s~~~~~~~d~~~~L~~~gLle~lI~LLr~l~----~~-----~~i~k~~ 370 (497)
.. +.-..+..+|..+|... +|....+...|.+..++.+|+.=. .. ..+....
T Consensus 622 -------s~--~ikk~Aa~iLsnL~a~~----------~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 622 -------KE--ETQEKAASVLADIFSSR----------QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred -------CH--HHHHHHHHHHHHHhcCC----------hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 00 00012233344444210 012223333344444444443100 00 0000000
Q ss_pred hcCCC----CCCCccccc--ccCCCcchhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhH
Q 010918 371 RQGEN----QEGTSAKSA--KTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCV 444 (497)
Q Consensus 371 ~~~~~----~~~~~~~~~--~~~~~~g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~i 444 (497)
++.+. ..|.-.... =..+-.+.+...+..++|++-... +...+++.|||+.+...-+ +.+|--||.|.+++
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr--~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLR--EGTLEGKRNAARAL 759 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHH--hCChHHHHHHHHHH
Confidence 00000 000000000 001233777888888998875544 5667778899988887544 67899999999999
Q ss_pred hhhhcCChHHHHHHHhcccCCCCC--chhHhhcCce
Q 010918 445 RNLLEGNAENQKVVADLELQGSIN--VPELTDLGLK 478 (497)
Q Consensus 445 RnL~e~n~~nQ~~i~~L~~~~~~~--~~~L~~~G~~ 478 (497)
.+||.+.+.+|.+.......|++. .+.|+.++.+
T Consensus 760 ~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~ 795 (2102)
T PLN03200 760 AQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD 795 (2102)
T ss_pred HHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence 999999999997766666666544 2445555444
No 5
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.97 E-value=0.0019 Score=73.43 Aligned_cols=371 Identities=14% Similarity=0.194 Sum_probs=225.0
Q ss_pred hHHHHHHHHHhcccccCCcccccccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHHh
Q 010918 28 LKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVL 107 (497)
Q Consensus 28 ~~~~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll 107 (497)
+.-++..|++++-+.+.+..+..+.+++-+...|.+ .+.++++++.++|++++.... |++.|...+.++.+.+++
T Consensus 266 lrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr----~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR----ENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHh
Confidence 456778899999999999989999999998888874 346789999999999998876 999999999999999988
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHhcCCCCCccCceeeeehhhccCCchhhHhhhc-
Q 010918 108 RSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCG- 186 (497)
Q Consensus 108 ~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~~~MViytc~~~s~er~~eL~~- 186 (497)
.... ......++-+|.|++-..+-..+-|=..+.|.+. .++. +++...++.=++|++... ++.+..+.
T Consensus 341 ~s~~------~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv-~LL~--d~~~~~val~iLy~LS~d--d~~r~~f~~ 409 (708)
T PF05804_consen 341 PSEN------EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLV-ELLK--DPNFREVALKILYNLSMD--DEARSMFAY 409 (708)
T ss_pred cCCC------HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHH-HHhC--CCchHHHHHHHHHHhccC--HhhHHHHhh
Confidence 6533 2477889999999999999888777777889855 4554 344445567788998843 23333333
Q ss_pred ccchHHHHHHHHHHhhcCCcchhHHHHH--------HHHhHhcCcHHHHHHhhhhcCCCcccCCC-------CCCCCCCC
Q 010918 187 DKGLAIMAEIVCTAASVGFKEDWFKFLV--------SRTCVEEIHFPQLFFKLSQVGASRNCEDS-------NSREGTFS 251 (497)
Q Consensus 187 ~~~i~i~~e~v~~a~~~~~d~ewl~lli--------~~~~le~~~l~~ly~~ls~~~~~~~~e~~-------~~~~~~~~ 251 (497)
..+++.+++.+.+.....-+.+-+.+++ .+.+.+.+.++.|..+. .. ..+.. .|..+ .
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra-~~----~~D~lLlKlIRNiS~h~--~ 482 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRA-LK----TRDPLLLKLIRNISQHD--G 482 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHH-Hh----cccHHHHHHHHHHHhcC--c
Confidence 4578877777665422222333233333 23455666666666542 10 00000 00011 1
Q ss_pred hhHhHHHHHHHHHh---hccccccccCchhHHHHHHHHHhhh-------------hhhhhhhcCCCCCCCCchhHHHHHh
Q 010918 252 SEQAFLLEIVSEIV---NERIEEIIVPNDFALSVLGIFTKSI-------------GLVDFYARGTPSLPTSSSAINVLGY 315 (497)
Q Consensus 252 ~eqvtLL~ll~a~l---~e~~~di~v~~~~a~~l~~~F~~~a-------------~~v~~~~~~~~~l~t~~~~~d~L~~ 315 (497)
+.|.-+.+++...+ .+.. ..+++.-++++...-. ..+... .+.+ ..+....|.+++
T Consensus 483 ~~k~~f~~~i~~L~~~v~~~~-----~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L-~~~L--~~g~~~dDl~LE 554 (708)
T PF05804_consen 483 PLKELFVDFIGDLAKIVSSGD-----SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWL-KDLL--KPGASEDDLLLE 554 (708)
T ss_pred hHHHHHHHHHHHHHHHhhcCC-----cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHH-HHHh--CCCCCChHHHHH
Confidence 34444555555322 2111 1122223333322211 111000 0111 122223356666
Q ss_pred HHHHHHHHhhccCCCCCCCcchhhhHHHHhhcccHHHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhHH
Q 010918 316 SLSILRNICAREDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRD 395 (497)
Q Consensus 316 sL~lL~~Lc~~~~~~s~~~~~~~d~~~~L~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~~ 395 (497)
+..++..+|.- ++-...+.+.|++..+++||+.-+.. ..|-..
T Consensus 555 ~Vi~~gtla~d-----------~~~A~lL~~sgli~~Li~LL~~kqeD--------------------------dE~VlQ 597 (708)
T PF05804_consen 555 VVILLGTLASD-----------PECAPLLAKSGLIPTLIELLNAKQED--------------------------DEIVLQ 597 (708)
T ss_pred HHHHHHHHHCC-----------HHHHHHHHhCChHHHHHHHHHhhCch--------------------------HHHHHH
Confidence 77777766631 12245777899999999999753310 144555
Q ss_pred HHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChH-------------HHHHHHhcc
Q 010918 396 LVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAE-------------NQKVVADLE 462 (497)
Q Consensus 396 lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~-------------nQ~~i~~L~ 462 (497)
++-+...+.+. ++..+.+-+..+++.-|= .-+.|.||-+|.-|-.|+-=+.+..++ |++++.-.+
T Consensus 598 il~~f~~ll~h-~~tr~~ll~~~~~~~yli-dL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~ 675 (708)
T PF05804_consen 598 ILYVFYQLLFH-EETREVLLKETEIPAYLI-DLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVE 675 (708)
T ss_pred HHHHHHHHHcC-hHHHHHHHhccchHHHHH-HHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 66666666666 344455544444433331 346788888888888888888888777 666666665
Q ss_pred cCCCCC
Q 010918 463 LQGSIN 468 (497)
Q Consensus 463 ~~~~~~ 468 (497)
.++..+
T Consensus 676 ~~~~~~ 681 (708)
T PF05804_consen 676 SQQLDD 681 (708)
T ss_pred cccccc
Confidence 555443
No 6
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.13 E-value=0.0016 Score=55.23 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=61.8
Q ss_pred chhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhc
Q 010918 391 GFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADL 461 (497)
Q Consensus 391 g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L 461 (497)
..|...+..++|++..++.....+.+.++++.+++. +.+.||-+++.|++|++|++.+.+++.+.+.+.
T Consensus 22 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~--l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 90 (120)
T cd00020 22 NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQL--LKSEDEEVVKAALWALRNLAAGPEDNKLIVLEA 90 (120)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH--HhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHC
Confidence 678889999999999999999999999999999996 556799999999999999999998887776653
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.09 E-value=0.0018 Score=54.92 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=88.9
Q ss_pred cchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHH
Q 010918 52 NILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANV 131 (497)
Q Consensus 52 ~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNi 131 (497)
.+++.+.+++++ .+......++++|.|+|...+.+...+++.+++..+..++... +..+.+.++..|+|+
T Consensus 7 ~~i~~l~~~l~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------~~~v~~~a~~~L~~l 76 (120)
T cd00020 7 GGLPALVSLLSS----SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE------DEEVVKAALWALRNL 76 (120)
T ss_pred CChHHHHHHHHc----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC------CHHHHHHHHHHHHHH
Confidence 456667777763 3356788899999999999999999999999999999988752 356888999999999
Q ss_pred HhcCcccHHHHHhhhchhHHHHHhcCCCCCccCceeeeehhh
Q 010918 132 SLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTC 173 (497)
Q Consensus 132 a~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~~~MViytc 173 (497)
+..++.....+|..-+...+..+++-++.++....+.++.|+
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999988888899887777788888777666665555555444
No 8
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.33 E-value=0.0027 Score=45.70 Aligned_cols=40 Identities=28% Similarity=0.343 Sum_probs=37.6
Q ss_pred ChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhh
Q 010918 407 RKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLL 448 (497)
Q Consensus 407 ~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~ 448 (497)
|+++++.|.+.||||.+++... ..+|-+++-|.||++||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 5788999999999999999988 999999999999999997
No 9
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.41 Score=52.83 Aligned_cols=321 Identities=17% Similarity=0.222 Sum_probs=183.1
Q ss_pred hhhhhhccccCchHHHHHHHHHhcccccCCc------ccccccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccch
Q 010918 16 LQPLLTTSNSSSLKDALEILIESSKTTVGRS------DLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEIT 89 (497)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~L~~~~k~~~~R~------~~a~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~ 89 (497)
.+.......|.+....+++.....|-.+... -+.+ -+.+++-+-|+ ...+.++-.+.-..|.|.+.|.++
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~---~~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLS---RDDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHc---cCCChhHHHHHHHHHHHHhcCchh
Confidence 4555666667777666665554433332222 1111 23333333332 244556677888999999999999
Q ss_pred hhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHhcCCCCCccCceeee
Q 010918 90 NQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMV 169 (497)
Q Consensus 90 NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~~~MV 169 (497)
+-..+++-+-+..+.+++.+++. .+-.-+...|||+|.-.....+-|-.+.-=+-++.++..++. .+|
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~------~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-----~~~- 211 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSA------DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-----LSM- 211 (514)
T ss_pred hccccccCCchHHHHHHhcCCcH------HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-----hHH-
Confidence 99999999999999999988765 255578999999999998888877666433334443333322 011
Q ss_pred ehhhccCCchhhHhhhcccchHHHHHHHHHHhhcCCcchhHHHHHHHHhHhcCcHHHHHHhhhhcCCCcccCCCCCCCCC
Q 010918 170 IYTCCDGSSGLFKELCGDKGLAIMAEIVCTAASVGFKEDWFKFLVSRTCVEEIHFPQLFFKLSQVGASRNCEDSNSREGT 249 (497)
Q Consensus 170 iytc~~~s~er~~eL~~~~~i~i~~e~v~~a~~~~~d~ewl~lli~~~~le~~~l~~ly~~ls~~~~~~~~e~~~~~~~~ 249 (497)
++.+ -|.++..|--.. +
T Consensus 212 ---------------------------lRn~----------tW~LsNlcrgk~-----------P--------------- 228 (514)
T KOG0166|consen 212 ---------------------------LRNA----------TWTLSNLCRGKN-----------P--------------- 228 (514)
T ss_pred ---------------------------HHHH----------HHHHHHHHcCCC-----------C---------------
Confidence 1111 122222220000 0
Q ss_pred CChhHhHHHHHHHHHhhccccccccCchhHHHHHHHHHhhhhhhhhhhcCCCCCCCCchhHHHHHhHHHHHHHHhhccCC
Q 010918 250 FSSEQAFLLEIVSEIVNERIEEIIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREDP 329 (497)
Q Consensus 250 ~~~eqvtLL~ll~a~l~e~~~di~v~~~~a~~l~~~F~~~a~~v~~~~~~~~~l~t~~~~~d~L~~sL~lL~~Lc~~~~~ 329 (497)
+.|.+....++....+-.. +...+++.-+...++-|+. +.
T Consensus 229 -----------------------~P~~~~v~~iLp~L~~ll~---------------~~D~~Vl~Da~WAlsyLsd--g~ 268 (514)
T KOG0166|consen 229 -----------------------SPPFDVVAPILPALLRLLH---------------STDEEVLTDACWALSYLTD--GS 268 (514)
T ss_pred -----------------------CCcHHHHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHHhc--CC
Confidence 0000000111111111000 0001222222333333331 11
Q ss_pred CCCCCcchhhhHHHHhhcccHHHHHHHhhhcCCChhhhhhhhcCCCC-CCCc------------c---cccccCCCcchh
Q 010918 330 AGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQ-EGTS------------A---KSAKTCPYIGFR 393 (497)
Q Consensus 330 ~s~~~~~~~d~~~~L~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~-~~~~------------~---~~~~~~~~~g~k 393 (497)
.+.-++..+.|.+-.++++|..-.++ ....+....+|. .|++ . ..-..+|-..+|
T Consensus 269 --------ne~iq~vi~~gvv~~LV~lL~~~~~~-v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ik 339 (514)
T KOG0166|consen 269 --------NEKIQMVIDAGVVPRLVDLLGHSSPK-VVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIK 339 (514)
T ss_pred --------hHHHHHHHHccchHHHHHHHcCCCcc-cccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHH
Confidence 12345667788888888888765432 011111111111 0000 0 000123455699
Q ss_pred HHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhcccCCCCC
Q 010918 394 RDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSIN 468 (497)
Q Consensus 394 ~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L~~~~~~~ 468 (497)
+...-+|+|.+-++++--++|-+.|-+|.+++.-.-.| -.+|-=|.|||-|++-+.. .+-|.-|-.+|++.
T Consensus 340 kEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e--f~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~ 410 (514)
T KOG0166|consen 340 KEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE--FDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIK 410 (514)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc--hHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCch
Confidence 99999999999999988888888999999999877766 4588889999999999988 55577788888653
No 10
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.95 E-value=0.019 Score=58.01 Aligned_cols=88 Identities=28% Similarity=0.305 Sum_probs=68.3
Q ss_pred hhcccHHHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhHHHHHHHHhhccCChhhHHHHHHhcChHHHh
Q 010918 345 QSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLL 424 (497)
Q Consensus 345 ~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL 424 (497)
.+++-++.++.+|...+.| ..+....-.+||.++ .+.+|+.+|+.||+++|.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp---------------------------~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~ 60 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDP---------------------------FIQEKALIALGNSAA-FPFNQDIIRDLGGISLIG 60 (254)
T ss_pred cCHHHHHHHHHHHhcCCCh---------------------------HHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHH
Confidence 3455678888888765543 444555556788644 679999999999999998
Q ss_pred hhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhccc
Q 010918 425 QQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLEL 463 (497)
Q Consensus 425 ~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L~~ 463 (497)
+. +++.+|-+|+-|+.|+-|+ -.+.+||..|+.--+
T Consensus 61 ~l--L~~p~~~vr~~AL~aL~Nl-s~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 61 SL--LNDPNPSVREKALNALNNL-SVNDENQEQIKMYIP 96 (254)
T ss_pred HH--cCCCChHHHHHHHHHHHhc-CCChhhHHHHHHHHH
Confidence 75 5667999999999999999 677999998875443
No 11
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.34 E-value=0.044 Score=38.34 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=34.5
Q ss_pred hhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhc
Q 010918 408 KHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLE 449 (497)
Q Consensus 408 ~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e 449 (497)
+++...+++.||++.++.... ..+|-+++-+++|+|||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcC
Confidence 346778999999999999866 6689999999999999963
No 12
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.14 E-value=0.11 Score=45.56 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=49.6
Q ss_pred HHHHHHHHhhccccchhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHH-HHHHHHHHHHhcCcccHHHHH
Q 010918 74 LLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIR-IALQVLANVSLAGETHQHAIW 143 (497)
Q Consensus 74 ~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r-~glQ~LgNia~~n~~~Q~~IW 143 (497)
..++|.+=|+|-++..||+.++.++|+..++.-- .. |..---+| +++=-+=|++-+|+++|+.|=
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c---~i--D~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCC---NI--DDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhc---CC--CcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5789999999999999999999999987665421 11 11112345 777778899999999999763
No 13
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=0.35 Score=53.36 Aligned_cols=174 Identities=18% Similarity=0.233 Sum_probs=121.8
Q ss_pred chhhhhhhhhccc-cC---chHHHHHHHHHhcccccCCccccc----ccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhh
Q 010918 12 SEDVLQPLLTTSN-SS---SLKDALEILIESSKTTVGRSDLAS----KNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNL 83 (497)
Q Consensus 12 ~~~~~~~~~~~~~-~~---~~~~~l~~L~~~~k~~~~R~~~a~----~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNl 83 (497)
.--.++||.+... ++ -..-+.+.|.+++|--+ ..++ +.+||.++.+|+ ....+.++-..=.++++
T Consensus 192 ~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~---P~P~~~~v~~iLp~L~~ll~----~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 192 SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN---PSPPFDVVAPILPALLRLLH----STDEEVLTDACWALSYL 264 (514)
T ss_pred hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC---CCCcHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Confidence 3456778887766 33 25567888888887653 1222 245555555554 55666778888899999
Q ss_pred ccccchhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhh-hchhHHHHHhc-CCCCC
Q 010918 84 CAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQ-FFPDEFATLAG-VRCQE 161 (497)
Q Consensus 84 Ca~~~~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~-~fP~~f~~ll~-~~d~k 161 (497)
-.+..+-=.++++.+.+.++.++|...+.. +..-+|..+||+++|+..-=+.|-.. ++|. |..++. .+.++
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~------v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~-l~~ll~~s~~~~ 337 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPK------VVTPALRAIGNIVTGSDEQTQVVINSGALPV-LSNLLSSSPKES 337 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcc------cccHHHhhccceeeccHHHHHHHHhcChHHH-HHHHhccCcchh
Confidence 999999999999999999999999776542 33467889999999987655555554 5555 556665 66666
Q ss_pred ccCceeeeehhhccCCchhhHhhhcccchHHHHHHHHH
Q 010918 162 TCDPLCMVIYTCCDGSSGLFKELCGDKGLAIMAEIVCT 199 (497)
Q Consensus 162 ~~~~~~MViytc~~~s~er~~eL~~~~~i~i~~e~v~~ 199 (497)
+.--.|-+|=|+..|+.+-++.+...--++.++.++.+
T Consensus 338 ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 338 IKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc
Confidence 77767999999999998888887654334444444433
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.79 E-value=10 Score=40.35 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=98.1
Q ss_pred hHHHHHHHHhhccCCCCCCCcchhhhHHHHhhcccHHHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhH
Q 010918 315 YSLSILRNICAREDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRR 394 (497)
Q Consensus 315 ~sL~lL~~Lc~~~~~~s~~~~~~~d~~~~L~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~ 394 (497)
.++++||.|.- +. ++.+.+...|..+.++.++-.-.. -+-+-.
T Consensus 306 ~~lslLralAG------~D-----svKs~IV~~gg~~~ii~l~~~h~~--------------------------~p~Vi~ 348 (461)
T KOG4199|consen 306 TCLSLLRALAG------SD-----SVKSTIVEKGGLDKIITLALRHSD--------------------------DPLVIQ 348 (461)
T ss_pred HHHHHHHHHhC------CC-----chHHHHHHhcChHHHHHHHHHcCC--------------------------ChHHHH
Confidence 57888887772 11 245567778888888766543110 113445
Q ss_pred HHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhcccCC---------
Q 010918 395 DLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQG--------- 465 (497)
Q Consensus 395 ~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L~~~~--------- 465 (497)
..+.+|..+|.+.|++--++-|-||-.+.++.-.--+-.-.+.--|-+.|||+.-...+|.+.+-.+....
T Consensus 349 ~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h 428 (461)
T KOG4199|consen 349 EVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANH 428 (461)
T ss_pred HHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcC
Confidence 56788999999999999999999999999998877777777777889999999999999998876655432
Q ss_pred ----CCCchhHhhcCceEEEeC
Q 010918 466 ----SINVPELTDLGLKVEVDK 483 (497)
Q Consensus 466 ----~~~~~~L~~~G~~v~id~ 483 (497)
.+-..+|+.+|+.|+...
T Consensus 429 ~tce~~akaALRDLGc~v~lre 450 (461)
T KOG4199|consen 429 ETCEAAAKAALRDLGCDVYLRE 450 (461)
T ss_pred ccHHHHHHHHHHhcCcchhhHH
Confidence 122358999999998754
No 15
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=90.54 E-value=3.7 Score=47.41 Aligned_cols=165 Identities=17% Similarity=0.254 Sum_probs=115.6
Q ss_pred hhhhhhhhccccCchH---HHHHHHHHhcccccCCcccccccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchh
Q 010918 14 DVLQPLLTTSNSSSLK---DALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITN 90 (497)
Q Consensus 14 ~~~~~~~~~~~~~~~~---~~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~N 90 (497)
+.+.+|-..=++.+.+ -+++.|..+|=-..++..++.-.+.+.+..++++ .+-.+....+|+|-|+.-.. .+
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s----~~~~l~~~aLrlL~NLSfd~-~~ 364 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS----ENEDLVNVALRLLFNLSFDP-EL 364 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC----CCHHHHHHHHHHHHHhCcCH-HH
Confidence 4455555554544433 3568889999888899999988999999999874 34467888899999998765 45
Q ss_pred hhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHH-HhhhchhHHHHHhcCCCCCccCceeee
Q 010918 91 QKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAI-WCQFFPDEFATLAGVRCQETCDPLCMV 169 (497)
Q Consensus 91 Q~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~I-W~~~fP~~f~~ll~~~d~k~~~~~~MV 169 (497)
...|++.|.+..+..+|..+.. ...++-+|.|++. .+++...+ -..+.|.+...++..+.+.+---+.-+
T Consensus 365 R~~mV~~GlIPkLv~LL~d~~~--------~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL 435 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDPNF--------REVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIAL 435 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCCch--------HHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHH
Confidence 7899999999999888875432 2357889999998 44454433 334688887778887777653323345
Q ss_pred ehhhccCCchhhHhhhcccchHHH
Q 010918 170 IYTCCDGSSGLFKELCGDKGLAIM 193 (497)
Q Consensus 170 iytc~~~s~er~~eL~~~~~i~i~ 193 (497)
++||.. ++...+.+|+..|++.+
T Consensus 436 ~iNLa~-~~rnaqlm~~g~gL~~L 458 (708)
T PF05804_consen 436 LINLAL-NKRNAQLMCEGNGLQSL 458 (708)
T ss_pred HHHHhc-CHHHHHHHHhcCcHHHH
Confidence 555552 34566777776677664
No 16
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.84 E-value=0.31 Score=50.10 Aligned_cols=186 Identities=16% Similarity=0.120 Sum_probs=103.2
Q ss_pred hhhhhhhhccccCc---hHHHHHHHHHhcccccCCcccccccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchh
Q 010918 14 DVLQPLLTTSNSSS---LKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITN 90 (497)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~N 90 (497)
+...|+|...++.+ -.-+...|+.+......+.....+.+++.+++.|++....+..++..-|+++|-++. .....
T Consensus 105 ~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~ 183 (312)
T PF03224_consen 105 DPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEY 183 (312)
T ss_dssp --HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-Ccchh
Confidence 46777777666555 566777788777777666643335788999999987554555666788899999996 77788
Q ss_pred hhHHhhcchhHHHHHHhcCCC-----CCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhh-hchhHHHHHhcCCCCCccC
Q 010918 91 QKSFIEQTGVGIVLRVLRSPG-----VNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQ-FFPDEFATLAGVRCQETCD 164 (497)
Q Consensus 91 Q~~i~~~~~i~~~~~ll~~~~-----~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~-~fP~~f~~ll~~~d~k~~~ 164 (497)
-..|.+.+++..+.++++... ..-.-.|.++-|.+++ +-+++.-..+=+. .+|.+...+-..+.+|++-
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL-----SF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvR 258 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL-----SFEPEIAEELNKKYLIPLLADILKDSIKEKVVR 258 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-----TTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH-----hcCHHHHHHHhccchHHHHHHHHHhcccchHHH
Confidence 888888999988888884221 1111234444444443 1222221211111 3444444444667889999
Q ss_pred ceeeeehhhccCCch-hhHhhhcccchHHHHHHHHHHhhcCCcch
Q 010918 165 PLCMVIYTCCDGSSG-LFKELCGDKGLAIMAEIVCTAASVGFKED 208 (497)
Q Consensus 165 ~~~MViytc~~~s~e-r~~eL~~~~~i~i~~e~v~~a~~~~~d~e 208 (497)
.+.+++.||+..+.. .+..+.....+++ .+.+. .++..|+|
T Consensus 259 v~la~l~Nl~~~~~~~~~~~mv~~~~l~~-l~~L~--~rk~~Ded 300 (312)
T PF03224_consen 259 VSLAILRNLLSKAPKSNIELMVLCGLLKT-LQNLS--ERKWSDED 300 (312)
T ss_dssp HHHHHHHHTTSSSSTTHHHHHHHH-HHHH-HHHHH--SS--SSHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHccHHHH-HHHHh--cCCCCCHH
Confidence 999999999954332 3333333333343 33332 24445665
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=87.64 E-value=2 Score=46.70 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=66.7
Q ss_pred HHHhhcccHHHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhHHHHHHHHhhccCChhhHHHHHHhcC--
Q 010918 342 DSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDG-- 419 (497)
Q Consensus 342 ~~L~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~~lvrli~nl~~~~~~~Qd~vr~~~g-- 419 (497)
+.+..+......+++||.+.. + |-...--.+.|.+||.||.|-++++.+-++||
T Consensus 77 ~~F~~~~I~a~~le~Lrq~ps-------S-----------------~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq 132 (604)
T KOG4500|consen 77 SLFRNYCIDAEALELLRQTPS-------S-----------------PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ 132 (604)
T ss_pred HHHHHHhhHHHHHHHHHhCCC-------C-----------------CcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence 344456555677788887541 1 22355567889999999999999999999999
Q ss_pred --hHHHhhhcccCCCCCcchhhhHH---hHhhhhcCChHHHHHHHhcc
Q 010918 420 --ILLLLQQCVTDEDNPFSREWGIW---CVRNLLEGNAENQKVVADLE 462 (497)
Q Consensus 420 --i~liL~~c~iD~~nP~~rEwai~---~iRnL~e~n~~nQ~~i~~L~ 462 (497)
|-++=.-|.+|+ |---|+.-. -+.|-.-+|.+-|+.++++.
T Consensus 133 ivid~L~~~cs~d~--~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~g 178 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDN--PANEEYSAVAFGVLHNYILDSRELRAQVADAG 178 (604)
T ss_pred ehHhhhccccccCC--ccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcc
Confidence 555555688765 333444332 36777788888888887775
No 18
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=87.52 E-value=3.8 Score=44.65 Aligned_cols=106 Identities=25% Similarity=0.314 Sum_probs=75.0
Q ss_pred hcccccCCcccccccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHHhcCCCCCCC--
Q 010918 38 SSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLD-- 115 (497)
Q Consensus 38 ~~k~~~~R~~~a~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~~~~~~e-- 115 (497)
-+|.+..|...-...|-..++..|...+..++-+...-|+|.|-|.|--.-+|-..|-++||-.++.++|+......+
T Consensus 69 ~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~a 148 (604)
T KOG4500|consen 69 RSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPA 148 (604)
T ss_pred HhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCcc
Confidence 344444444332222334445555444333356778899999999999999999999999999999998887654432
Q ss_pred -chhHHHHHHHHHHHHHHhcCcccHHHHHhh
Q 010918 116 -KDYGIIRIALQVLANVSLAGETHQHAIWCQ 145 (497)
Q Consensus 116 -~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~ 145 (497)
..|..+||| +|.|-..+|+..|..+-..
T Consensus 149 ne~~~~v~~g--~l~Ny~l~~~~l~aq~~~~ 177 (604)
T KOG4500|consen 149 NEEYSAVAFG--VLHNYILDSRELRAQVADA 177 (604)
T ss_pred HHHHHHHHHH--HHHHhhCCcHHHHHHHHhc
Confidence 256778887 5999999999988776443
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=87.03 E-value=4 Score=41.35 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=97.1
Q ss_pred cchhhhhhhhhccccCc----hHHHHHHHHHhcccccCCcccccccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccc
Q 010918 11 LSEDVLQPLLTTSNSSS----LKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAG 86 (497)
Q Consensus 11 ~~~~~~~~~~~~~~~~~----~~~~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~ 86 (497)
+..+-++.|...=.+++ -+.++-+|-..+--+.+|+-+..-...+.+..+|. .++.+.-...+.+|-|+ +.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~----~p~~~vr~~AL~aL~Nl-s~ 83 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN----DPNPSVREKALNALNNL-SV 83 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC----CCChHHHHHHHHHHHhc-CC
Confidence 66677788877755544 34555666665555555554444345555555554 33445556678888888 56
Q ss_pred cchhhhHHhhcchhHHHHH-HhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHhcCCCCCccCc
Q 010918 87 EITNQKSFIEQTGVGIVLR-VLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDP 165 (497)
Q Consensus 87 ~~~NQ~~i~~~~~i~~~~~-ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~ 165 (497)
..+||..|.. -+..+.. +++. ... ......|+++|+|+++-+.. |..+ ....|++ ..++...++++-..
T Consensus 84 ~~en~~~Ik~--~i~~Vc~~~~s~-~ln----s~~Q~agLrlL~nLtv~~~~-~~~l-~~~i~~l-l~LL~~G~~~~k~~ 153 (254)
T PF04826_consen 84 NDENQEQIKM--YIPQVCEETVSS-PLN----SEVQLAGLRLLTNLTVTNDY-HHML-ANYIPDL-LSLLSSGSEKTKVQ 153 (254)
T ss_pred ChhhHHHHHH--HHHHHHHHHhcC-CCC----CHHHHHHHHHHHccCCCcch-hhhH-HhhHHHH-HHHHHcCChHHHHH
Confidence 6899998853 3544444 4443 222 23568999999999988665 4444 4578875 56777776665333
Q ss_pred eeeeehhhccCCchhhHhhhccc
Q 010918 166 LCMVIYTCCDGSSGLFKELCGDK 188 (497)
Q Consensus 166 ~~MViytc~~~s~er~~eL~~~~ 188 (497)
..=++.|.- .++..+.++...+
T Consensus 154 vLk~L~nLS-~np~~~~~Ll~~q 175 (254)
T PF04826_consen 154 VLKVLVNLS-ENPDMTRELLSAQ 175 (254)
T ss_pred HHHHHHHhc-cCHHHHHHHHhcc
Confidence 333444433 2344455555444
No 20
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.11 E-value=2.6 Score=44.42 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=60.8
Q ss_pred cchhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhcc
Q 010918 390 IGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLE 462 (497)
Q Consensus 390 ~g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L~ 462 (497)
.++|..-.++||-++-+||.+|.+|-|.||++-++..-.-|+.| -.|==|++||-.|..+|+.-|.....+.
T Consensus 138 ~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~-~~r~kaL~AissLIRn~~~g~~~fl~~~ 209 (342)
T KOG2160|consen 138 AELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPN-TVRTKALFAISSLIRNNKPGQDEFLKLN 209 (342)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCc-hHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 38888999999999999999999999999999988886643333 3456799999999999999998776554
No 21
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=84.88 E-value=4.4 Score=43.03 Aligned_cols=178 Identities=15% Similarity=0.170 Sum_probs=119.9
Q ss_pred hhhhhhhhccccCch-----HHHHHHHHHhcccccCCcccccccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccc
Q 010918 14 DVLQPLLTTSNSSSL-----KDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEI 88 (497)
Q Consensus 14 ~~~~~~~~~~~~~~~-----~~~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~ 88 (497)
.+|+||++...|+-. .-+-+.|.++. +||.---++......+-+|.++-+.-.-+.+.-..-.+--+--+-.
T Consensus 199 galeplL~ll~ss~~~ismlRn~TWtLSNlc---RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~ 275 (526)
T COG5064 199 GALEPLLGLLLSSAIHISMLRNATWTLSNLC---RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN 275 (526)
T ss_pred CchHHHHHHHHhccchHHHHHHhHHHHHHhh---CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH
Confidence 567888887776553 33444455554 3454333344444455555555443344445555555555556666
Q ss_pred hhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHhcCCCCCccCceee
Q 010918 89 TNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCM 168 (497)
Q Consensus 89 ~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~~~M 168 (497)
+.=.++.+.+...+++.+|..++... ..=++-..||++.|+..--+.|..+-+-..|.+++.+|.+.+.--.|-
T Consensus 276 E~i~avld~g~~~RLvElLs~~sa~i------qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCW 349 (526)
T COG5064 276 EKIQAVLDVGIPGRLVELLSHESAKI------QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACW 349 (526)
T ss_pred HHHHHHHhcCCcHHHHHHhcCccccc------cCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhe
Confidence 66668888888899999998877642 122355689999999988888888888888999999998888888899
Q ss_pred eehhhccCCchhhHhhhcccchHHHHHHHHHH
Q 010918 169 VIYTCCDGSSGLFKELCGDKGLAIMAEIVCTA 200 (497)
Q Consensus 169 Viytc~~~s~er~~eL~~~~~i~i~~e~v~~a 200 (497)
-|-|+--|+.+.++.+-.---++.++.++-.+
T Consensus 350 TiSNITAGnteqiqavid~nliPpLi~lls~a 381 (526)
T COG5064 350 TISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381 (526)
T ss_pred eecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence 99999988888888765432244444444444
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=80.65 E-value=98 Score=34.26 Aligned_cols=132 Identities=13% Similarity=0.123 Sum_probs=81.7
Q ss_pred HHHHHHHhcccccC-CcccccccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHHhcC
Q 010918 31 ALEILIESSKTTVG-RSDLASKNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRS 109 (497)
Q Consensus 31 ~l~~L~~~~k~~~~-R~~~a~~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~ 109 (497)
++..|-...+...+ -+.+.+.++++.|++.|. .........+.+.|++++-... .-+.+.+.+....+..++..
T Consensus 97 ~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~----~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~ 171 (503)
T PF10508_consen 97 ALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR----DPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQ 171 (503)
T ss_pred HHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc----CCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhc
Confidence 34444444444433 222456788888888875 5667788899999999997544 33345555555555556544
Q ss_pred CCCCCCchhHHHH-HHHHHHHHHHhcCcccHHHHHhhhchhHHHHHhcCCCCCccCceeeeehhhc
Q 010918 110 PGVNLDKDYGIIR-IALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCC 174 (497)
Q Consensus 110 ~~~~~e~~~~~~r-~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~~~MViytc~ 174 (497)
.+ + ..| -.+.++.+++..++++-+.+|..-+=+.+...+.-+|.-+.--.+.+++...
T Consensus 172 ~~-----~--~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La 230 (503)
T PF10508_consen 172 SS-----D--IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELA 230 (503)
T ss_pred cC-----H--HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 22 1 233 4899999999999999999998543333444444455433333344555544
No 23
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=80.05 E-value=2.5 Score=40.82 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=44.6
Q ss_pred chhhhHHhhcchhHHHHHHhcCCCCC-----------C-CchhHHHHHHHHHHHHHHhcCcccHHHHHhhh
Q 010918 88 ITNQKSFIEQTGVGIVLRVLRSPGVN-----------L-DKDYGIIRIALQVLANVSLAGETHQHAIWCQF 146 (497)
Q Consensus 88 ~~NQ~~i~~~~~i~~~~~ll~~~~~~-----------~-e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~ 146 (497)
..+|+.|++++..+.+..++..+-.. . .....++|.+.+||...+.+|+++|..+-+++
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~ 103 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHL 103 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 46899999999998888877443211 1 13457899999999999999999999887653
No 24
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=76.92 E-value=3 Score=47.86 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=60.9
Q ss_pred CCcchhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChH--HHHHHHhc
Q 010918 388 PYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAE--NQKVVADL 461 (497)
Q Consensus 388 ~~~g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~--nQ~~i~~L 461 (497)
..+-.++..-..|..+||.+-++..+||++|||+.+.. -.|.+|+-+.-.|-.|+|||.-++.. |.-.|..+
T Consensus 245 q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~--Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~ 318 (717)
T KOG1048|consen 245 QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVA--LLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL 318 (717)
T ss_pred cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHH--HhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence 45556666677799999999999999999999998875 46899999999999999999999887 76666544
No 25
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.17 E-value=1.2e+02 Score=32.65 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=46.8
Q ss_pred CChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHH
Q 010918 406 RRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVV 458 (497)
Q Consensus 406 ~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i 458 (497)
++..|.+.|.+.||++.|...-----.||.+-|-+..||-.||-..|+|-..+
T Consensus 316 G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ 368 (461)
T KOG4199|consen 316 GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKA 368 (461)
T ss_pred CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHH
Confidence 57788899999999999988877788899999999999999999999986544
No 26
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=73.94 E-value=5.8 Score=37.19 Aligned_cols=66 Identities=24% Similarity=0.317 Sum_probs=55.4
Q ss_pred chhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHh
Q 010918 391 GFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVAD 460 (497)
Q Consensus 391 g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~ 460 (497)
.-|-.++.=+||-.| .|-|-..+|+++-+.+.+++ +.+.|-.+.|++|-++-|||-+ +.|-++|.+
T Consensus 32 eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvds--l~e~ne~LvefgIgglCNlC~d-~~n~~~I~e 97 (173)
T KOG4646|consen 32 EAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDS--LEEQNELLVEFGIGGLCNLCLD-KTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHH--hhcccHHHHHHhHHHHHhhccC-hHHHHHHHH
Confidence 345667777888888 58899999999999999987 6789999999999999999986 567777765
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=72.72 E-value=1.9e+02 Score=33.42 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=63.9
Q ss_pred hHHHHhhcccHHHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhHHHHHHHHhhccCChhhHHHH-HHhc
Q 010918 340 LVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQDEI-RERD 418 (497)
Q Consensus 340 ~~~~L~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~~lvrli~nl~~~~~~~Qd~v-r~~~ 418 (497)
+...+..+|+++.+++++.. |-+..|..-++++-++.|.+++.-..- -.-=
T Consensus 453 ~kskfl~~ngId~l~s~~~~----------------------------~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki 504 (678)
T KOG1293|consen 453 LKSKFLRNNGIDILESMLTD----------------------------PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKI 504 (678)
T ss_pred HHHHHHHcCcHHHHHHHhcC----------------------------CCchHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 34667778888888777642 223556667788889999887764432 2222
Q ss_pred ChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhc
Q 010918 419 GILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADL 461 (497)
Q Consensus 419 gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L 461 (497)
|-..|+ |-+.|..|-+.|=+.--+|||+.++.+--+++=+.
T Consensus 505 ~a~~i~--~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 505 PANLIL--DLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred hHHHHH--HHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 233333 45567888899999999999999999988887543
No 28
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=71.29 E-value=1.7 Score=35.20 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=43.9
Q ss_pred CCCcchhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHh
Q 010918 387 CPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVAD 460 (497)
Q Consensus 387 ~~~~g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~ 460 (497)
.+.+..|...++.+|.+ +.+ ..++.+...+ .+.||.+|.+|++++..+ |+++....+.+
T Consensus 11 ~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l--~d~~~~vr~~a~~aL~~i--~~~~~~~~L~~ 69 (88)
T PF13646_consen 11 DPDPQVRAEAARALGEL--GDP---------EAIPALIELL--KDEDPMVRRAAARALGRI--GDPEAIPALIK 69 (88)
T ss_dssp SSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHH--TSSSHHHHHHHHHHHHCC--HHHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHH--cCCCHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence 45668999999999933 222 3477777777 689999999999999987 55555555555
No 29
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=70.42 E-value=11 Score=26.66 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=33.7
Q ss_pred chhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHh
Q 010918 88 ITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSL 133 (497)
Q Consensus 88 ~~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~ 133 (497)
+.|...+++.|++..+.+++... +..+.+.+.-.|+|++.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~------~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSP------DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSS------SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCC------CHHHHHHHHHHHHHHhC
Confidence 57888999999999999999842 45688899999999974
No 30
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.76 E-value=10 Score=43.99 Aligned_cols=127 Identities=21% Similarity=0.209 Sum_probs=86.2
Q ss_pred HHHHHHHHhccccc-CCcccccccchHHHHHhhhcCCCCCcH---HHHHHHHHHHHhhccccchhhhHHhhcchhHHHHH
Q 010918 30 DALEILIESSKTTV-GRSDLASKNILPEVLQLTQSIPHSSGC---HYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLR 105 (497)
Q Consensus 30 ~~l~~L~~~~k~~~-~R~~~a~~~~~~~~l~il~~~s~~~~~---~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ 105 (497)
|++=-|.++.|.-. .-.-+|-+++|-+.+.||.- +.++ =....|+.+|-|+.-..+.||+-|++-+.|.+..+
T Consensus 185 e~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee---EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~k 261 (970)
T KOG0946|consen 185 EAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE---EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLK 261 (970)
T ss_pred hHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh---cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHh
Confidence 45555666666432 22335677889888888752 2222 25789999999999999999999999999999998
Q ss_pred HhcCCCCCC------C-chhHHHHHHHHHHHHHHhcC------cccHHHHHhhhchhHHHHHhcCCC
Q 010918 106 VLRSPGVNL------D-KDYGIIRIALQVLANVSLAG------ETHQHAIWCQFFPDEFATLAGVRC 159 (497)
Q Consensus 106 ll~~~~~~~------e-~~~~~~r~glQ~LgNia~~n------~~~Q~~IW~~~fP~~f~~ll~~~d 159 (497)
+|.-...+. + .-...+.+.||.+-=++.-+ -.+|+++-....-+.+..++-+++
T Consensus 262 lL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 262 LLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred hcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 875443222 2 23445779999986554433 345667776666666666666653
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=65.88 E-value=3.3 Score=27.92 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=23.5
Q ss_pred hHHHhhhcccCCCCCcchhhhHHhHhhhhcC
Q 010918 420 ILLLLQQCVTDEDNPFSREWGIWCVRNLLEG 450 (497)
Q Consensus 420 i~liL~~c~iD~~nP~~rEwai~~iRnL~e~ 450 (497)
+|.+++.+. |.+|-.|+.|..|+-.+++.
T Consensus 2 lp~l~~~l~--D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLN--DPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT---SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHHHhh
Confidence 577777766 77999999999999998874
No 32
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=62.11 E-value=75 Score=39.93 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=63.4
Q ss_pred HHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhcccCCCCCch-hHhhcCce
Q 010918 400 IGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLELQGSINVP-ELTDLGLK 478 (497)
Q Consensus 400 i~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L~~~~~~~~~-~L~~~G~~ 478 (497)
|.||.-++++-|..+++.|.++.+.+ .|-..|-.|-+=+.-|+|||+-.-|.-|.--.-+-+-..+..= +=+.++++
T Consensus 554 LWNLSAR~p~DQq~LwD~gAv~mLrn--LIhSKhkMIa~GSaaALrNLln~RPAkq~~~~~~~~g~svgsL~vrKqkale 631 (2195)
T KOG2122|consen 554 LWNLSARSPEDQQMLWDDGAVPMLRN--LIHSKHKMIAMGSAAALRNLLNFRPAKQASHRLMSPGSSVGSLAVRKQKALE 631 (2195)
T ss_pred hhhhhcCCHHHHHHHHhcccHHHHHH--HHhhhhhhhhhhHHHHHHHHhcCCchhhhhhcccCccccccchhhhHHhhhc
Confidence 89999999999999999999999887 4678899999999999999999888876554444333334432 23456777
Q ss_pred EEEeC
Q 010918 479 VEVDK 483 (497)
Q Consensus 479 v~id~ 483 (497)
.++|.
T Consensus 632 ~eL~~ 636 (2195)
T KOG2122|consen 632 AELDA 636 (2195)
T ss_pred cchhh
Confidence 76663
No 33
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=56.11 E-value=18 Score=32.05 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=44.7
Q ss_pred ccchHHHHHhhhcC------CCCCcHHHHHHHHHHHHhhccc-cchhhhHHhhcchhHHHHHHhcC
Q 010918 51 KNILPEVLQLTQSI------PHSSGCHYLLLSLKLLRNLCAG-EITNQKSFIEQTGVGIVLRVLRS 109 (497)
Q Consensus 51 ~~~~~~~l~il~~~------s~~~~~~~l~~clR~LRNlCa~-~~~NQ~~i~~~~~i~~~~~ll~~ 109 (497)
-++...+.+++..+ -.+.....+.-||.+|.-.|.| |.+||.++.+-..++.+..+|+.
T Consensus 42 ~nlV~~~~~ll~~l~~~~~~~~~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 42 YNLVSETVDLLDSLQEFGKDINSDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 45555555555443 1145667889999999999999 99999999987777888777754
No 34
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.20 E-value=11 Score=44.95 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=59.0
Q ss_pred chhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHH
Q 010918 391 GFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKV 457 (497)
Q Consensus 391 g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~ 457 (497)
.=|.-..=++|..+.+-+.-|..+-+.+-|.++|.+=+-|. .|.+|+|..+|+-.|-++++++|--
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~ 637 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWS 637 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhc
Confidence 55666777899999999999999999999999999888775 8999999999999999999999843
No 35
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=49.61 E-value=40 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=30.7
Q ss_pred hhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 010918 89 TNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVS 132 (497)
Q Consensus 89 ~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia 132 (497)
.|...|++.++++.+.+++.. .+..+.+.++..|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~------~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKS------EDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHc
Confidence 466788899999999888873 23568999999999986
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=48.01 E-value=4.2e+02 Score=29.38 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=54.3
Q ss_pred cCCCcchhHHHHHHHHhhccCChhhHHHHHHhcCh-HHHhhhcccCCCCCcchhhhHHhHhhhhcCCh------HHHHHH
Q 010918 386 TCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGI-LLLLQQCVTDEDNPFSREWGIWCVRNLLEGNA------ENQKVV 458 (497)
Q Consensus 386 ~~~~~g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi-~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~------~nQ~~i 458 (497)
..||+.+|....|++..+|...--++. +-..+|+ +.+|+.-. +.+.-.+||=--+|+.|.+... .++.++
T Consensus 401 ~qPF~elr~a~~~~l~~l~~~~Wg~~~-i~~~~gfie~lldr~~--E~~K~~ke~K~~ii~~l~~~~~~~~~~~~~~~~~ 477 (503)
T PF10508_consen 401 KQPFPELRCAAYRLLQALAAQPWGQRE-ICSSPGFIEYLLDRST--ETTKEGKEAKYDIIKALAKSSTNASSVFDDPEYL 477 (503)
T ss_pred cCCchHHHHHHHHHHHHHhcCHHHHHH-HHhCccHHhhhcCCCC--CCCHHHHHHHHHHHHHHHhcccchhhcCCCHHHH
Confidence 579999999999999999988755555 5555554 88887543 4577899999888888885544 355555
Q ss_pred Hhcc
Q 010918 459 ADLE 462 (497)
Q Consensus 459 ~~L~ 462 (497)
.+|+
T Consensus 478 ~kL~ 481 (503)
T PF10508_consen 478 GKLQ 481 (503)
T ss_pred HHHH
Confidence 4443
No 37
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.18 E-value=48 Score=35.24 Aligned_cols=118 Identities=15% Similarity=0.105 Sum_probs=79.6
Q ss_pred CCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHH-HHHHHHHHHHhcCcccHHHHHhh
Q 010918 67 SSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIR-IALQVLANVSLAGETHQHAIWCQ 145 (497)
Q Consensus 67 ~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r-~glQ~LgNia~~n~~~Q~~IW~~ 145 (497)
.+..+-...||=.|.-+| +...|=+.|.+++|...+..++.... +-+| .+.+++|=.+-+|..+|..|-..
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~-------~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSD-------AELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCc-------HHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 567777888888888775 56788899999999988876554432 2455 89999999999999999999999
Q ss_pred hchhHHHHHhcCCCCCcc-CceeeeehhhccCCchhhHhhhcccchHH
Q 010918 146 FFPDEFATLAGVRCQETC-DPLCMVIYTCCDGSSGLFKELCGDKGLAI 192 (497)
Q Consensus 146 ~fP~~f~~ll~~~d~k~~-~~~~MViytc~~~s~er~~eL~~~~~i~i 192 (497)
.|-.-++..+...+...+ .-.+.-|+..++++..-..+...-.|...
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~ 213 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQV 213 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHH
Confidence 877767766664433322 22333444444554433333333334443
No 38
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.68 E-value=2.2e+02 Score=33.80 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=88.0
Q ss_pred cccCchhHHHHHHHHHhhhhhhhhhhcCCCCCCCCchhHHHHHhHHHHHHHHhhccCCCCCCCcchhhhHHHHhh-cccH
Q 010918 272 IIVPNDFALSVLGIFTKSIGLVDFYARGTPSLPTSSSAINVLGYSLSILRNICAREDPAGSSSVNRADLVDSLQS-HGLI 350 (497)
Q Consensus 272 i~v~~~~a~~l~~~F~~~a~~v~~~~~~~~~l~t~~~~~d~L~~sL~lL~~Lc~~~~~~s~~~~~~~d~~~~L~~-~gLl 350 (497)
-+...++-.|+.++|.+.-+.+......-. +...-|=.+++.++..+-+.-+ +.+++.++. |-.+
T Consensus 103 s~qsdd~g~~iae~fik~qd~I~lll~~~e-----~~DF~VR~~aIqLlsalls~r~---------~e~q~~ll~~P~gI 168 (970)
T KOG0946|consen 103 STQSDDLGLWIAEQFIKNQDNITLLLQSLE-----EFDFHVRLYAIQLLSALLSCRP---------TELQDALLVSPMGI 168 (970)
T ss_pred chhhhHHHHHHHHHHHcCchhHHHHHHHHH-----hhchhhhhHHHHHHHHHHhcCC---------HHHHHHHHHCchhH
Confidence 334567779999999987554422221100 0000122477888887764211 236777764 8889
Q ss_pred HHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhc---
Q 010918 351 EMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQC--- 427 (497)
Q Consensus 351 e~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c--- 427 (497)
..++++||.-+.| +|-+-+-++.-++-.|+.+|..|.=-+...-+++--
T Consensus 169 S~lmdlL~DsrE~----------------------------IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 169 SKLMDLLRDSREP----------------------------IRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHhhhhhh----------------------------hchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999975532 233445567777778888887765222222222111
Q ss_pred -ccCCCCCcchhhhHHhHhhhhcCChHHHHHHHh
Q 010918 428 -VTDEDNPFSREWGIWCVRNLLEGNAENQKVVAD 460 (497)
Q Consensus 428 -~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~ 460 (497)
..|. -.+-|=+++-+-||+.+|.-||.+-++
T Consensus 221 Gg~dG--gIVveDCL~ll~NLLK~N~SNQ~~FrE 252 (970)
T KOG0946|consen 221 GGLDG--GIVVEDCLILLNNLLKNNISNQNFFRE 252 (970)
T ss_pred CCCCC--cchHHHHHHHHHHHHhhCcchhhHHhc
Confidence 1111 145677889999999999999998765
No 39
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=44.64 E-value=1.3e+02 Score=35.11 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=89.6
Q ss_pred hhhhhhccccCchHHHHHHHHHhcccccCCcccccccchHHHHHhhhcCCCC--CcHHHHHHHHHHHHhhccccchhhhH
Q 010918 16 LQPLLTTSNSSSLKDALEILIESSKTTVGRSDLASKNILPEVLQLTQSIPHS--SGCHYLLLSLKLLRNLCAGEITNQKS 93 (497)
Q Consensus 16 ~~~~~~~~~~~~~~~~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il~~~s~~--~~~~~l~~clR~LRNlCa~~~~NQ~~ 93 (497)
+-.|++.-++.=-+.+-.+|-++++..++|+.++ |..++++...|+..... .+-+.+..-...|+|.-+....|-..
T Consensus 571 l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkd 649 (717)
T KOG1048|consen 571 LVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKD 649 (717)
T ss_pred HHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 3345566677778899999999999999999776 89999999999775542 33466777799999999999999999
Q ss_pred HhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 010918 94 FIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVS 132 (497)
Q Consensus 94 i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia 132 (497)
+.+.+++...+-|.++.. ..-.+++.-|||.++=
T Consensus 650 l~~~~g~~kL~~I~~s~~-----S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 650 LLEIKGIPKLRLISKSQH-----SPKEFKAASSVLDVLW 683 (717)
T ss_pred HHhccChHHHHHHhcccC-----CHHHHHHHHHHHHHHH
Confidence 999999988877776611 2458999999997753
No 40
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=41.79 E-value=66 Score=29.80 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=41.2
Q ss_pred CCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH
Q 010918 67 SSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVS 132 (497)
Q Consensus 67 ~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia 132 (497)
........+|+||+|-++-....-...+..-+.+..+...|.+. .+.+-+..+|+|+-++
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~------~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP------NIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT------SHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC------CHHHHHHHHHHHHHHH
Confidence 35667889999999998877766565666555556665555442 3456678899998776
No 41
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=36.34 E-value=1.4e+02 Score=30.70 Aligned_cols=125 Identities=16% Similarity=0.180 Sum_probs=71.5
Q ss_pred cccCchHHHHHHHHHhcccccCCccccc-------ccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchhhhHHh
Q 010918 23 SNSSSLKDALEILIESSKTTVGRSDLAS-------KNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFI 95 (497)
Q Consensus 23 ~~~~~~~~~l~~L~~~~k~~~~R~~~a~-------~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~ 95 (497)
++....+=+|.-+-++..+...|.++-- ...|.-++.++. .+.-.....+.+.|=++.+.+........
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~----~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~ 144 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD----RNDSFIQLKAAFILTSLLSQGPKRSEKLV 144 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-----SSHHHHHHHHHHHHHHHTSTTT--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc----CCCHHHHHHHHHHHHHHHHcCCccccchH
Confidence 4455566667777777777766653221 124555565443 22444556677888777777777666533
Q ss_pred hcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHh
Q 010918 96 EQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLA 155 (497)
Q Consensus 96 ~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll 155 (497)
.+.+..+.+.+.... +..+......++|.|+++. ..+.....+|+.-+-..+..++
T Consensus 145 -~~~l~~ll~~L~~~l--~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 145 -KEALPKLLQWLSSQL--SSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp -HHHHHHHHHHHH-TT---HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhh--cCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHH
Confidence 122244555555421 1133445689999999995 9999999999987777777766
No 42
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=36.02 E-value=1.1e+02 Score=27.04 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcccc-chhhhHHhhcch-------hHHHHHHhcCC---C-CCCCchhHHHHHHHHHHHHHHhc-Ccc
Q 010918 71 HYLLLSLKLLRNLCAGE-ITNQKSFIEQTG-------VGIVLRVLRSP---G-VNLDKDYGIIRIALQVLANVSLA-GET 137 (497)
Q Consensus 71 ~~l~~clR~LRNlCa~~-~~NQ~~i~~~~~-------i~~~~~ll~~~---~-~~~e~~~~~~r~glQ~LgNia~~-n~~ 137 (497)
+++..-||+|+-+|-|. ...|+-+|.-++ +..+..++... . ...+..+....-++.+|.=.+-| +.+
T Consensus 8 ~~~~~ilr~LQLlCEghn~~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~~~~~~~~~~~~~~~q~~~tL~E~iQGPC~e 87 (109)
T PF08454_consen 8 EIIQRILRFLQLLCEGHNLDLQNYLRQQPNNKNSYNLVSETVDLLDSLQEFGKDINSDNIELIIQCFDTLTEFIQGPCIE 87 (109)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 45677899999999876 456888887666 24444455432 1 11234567788899999999999 999
Q ss_pred cHHHHHhhhchhHHHHHhc
Q 010918 138 HQHAIWCQFFPDEFATLAG 156 (497)
Q Consensus 138 ~Q~~IW~~~fP~~f~~ll~ 156 (497)
+|.++-..-|.+..-.+++
T Consensus 88 NQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 88 NQIALANSKFLDIINDLLS 106 (109)
T ss_pred hHHHHHHccHHHHHHHHHh
Confidence 9999998888887766553
No 43
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=35.88 E-value=1.7e+02 Score=26.59 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=48.3
Q ss_pred cchHHHHHhh-hcCCCCCcHHHHHHHHHHHHhhccccc-hhhhHHhhcchhHHHHHHhcCCC----CCCCchhHHHHHHH
Q 010918 52 NILPEVLQLT-QSIPHSSGCHYLLLSLKLLRNLCAGEI-TNQKSFIEQTGVGIVLRVLRSPG----VNLDKDYGIIRIAL 125 (497)
Q Consensus 52 ~~~~~~l~il-~~~s~~~~~~~l~~clR~LRNlCa~~~-~NQ~~i~~~~~i~~~~~ll~~~~----~~~e~~~~~~r~gl 125 (497)
+.|..|++-| +++.. ++.+.-..|||+|..+|..++ ..+..++...- ++..+..+-. ...+..+..+|-.-
T Consensus 34 ~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~--~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A 110 (122)
T cd03572 34 GSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA--QIRECANYKGPPDPLKGDSLNEKVREEA 110 (122)
T ss_pred HHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH--HHHHHHHcCCCCCcccCcchhHHHHHHH
Confidence 3455666554 67775 446667999999999999987 55666666543 3333333332 12345667888666
Q ss_pred HHHHHHH
Q 010918 126 QVLANVS 132 (497)
Q Consensus 126 Q~LgNia 132 (497)
|=|.++.
T Consensus 111 ~El~~~i 117 (122)
T cd03572 111 QELIKAI 117 (122)
T ss_pred HHHHHHH
Confidence 5555444
No 44
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=35.44 E-value=1.3e+02 Score=37.53 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhcccc------chhhhHHhhcchhHHHHHHhcCCCCC-CC-chhHHHHHHHHHHHHHHhcCcccHHHH
Q 010918 71 HYLLLSLKLLRNLCAGE------ITNQKSFIEQTGVGIVLRVLRSPGVN-LD-KDYGIIRIALQVLANVSLAGETHQHAI 142 (497)
Q Consensus 71 ~~l~~clR~LRNlCa~~------~~NQ~~i~~~~~i~~~~~ll~~~~~~-~e-~~~~~~r~glQ~LgNia~~n~~~Q~~I 142 (497)
++..+-+--|--.|++. ..||--++|.+.-++++++|+-+-.. .| .-..++|.+-|||-|.+.||+.+|..+
T Consensus 1202 r~vkeiLiRl~k~Cv~~~~~k~rk~~QrLLkNmg~h~VvLdllqiPydkk~D~~M~elm~laHeFLqnFC~gN~qNQ~lL 1281 (2706)
T KOG3533|consen 1202 RLVKEILIRLTKMCVRKGDPKPRKMNQRLLKNMGVHEVVLELLQIPYDKKHDHKMMELMTLAHEFLQNFCKGNKQNQSLL 1281 (2706)
T ss_pred HHHHHHHHHHHHHHhhCCCCCccHHHHHHHHhcchHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 45566666667788887 34566677666669999999887654 33 346789999999999999999999998
Q ss_pred Hhhh
Q 010918 143 WCQF 146 (497)
Q Consensus 143 W~~~ 146 (497)
.++.
T Consensus 1282 hkhi 1285 (2706)
T KOG3533|consen 1282 HKHI 1285 (2706)
T ss_pred HHHH
Confidence 8764
No 45
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=34.92 E-value=1.3e+02 Score=32.85 Aligned_cols=80 Identities=19% Similarity=0.085 Sum_probs=60.9
Q ss_pred HHHHHHHhcccccCCcccccccchHHHHHhh--hc----CCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHH
Q 010918 31 ALEILIESSKTTVGRSDLASKNILPEVLQLT--QS----IPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVL 104 (497)
Q Consensus 31 ~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il--~~----~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~ 104 (497)
+|++|--++|+..+-+.+..++-+..++..= .. ......-....+.+|||=|+.-..+.-|..+.+.++...+.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4778888899999888888766554444331 11 02245667899999999999999999999999999998777
Q ss_pred HHhcCC
Q 010918 105 RVLRSP 110 (497)
Q Consensus 105 ~ll~~~ 110 (497)
..|...
T Consensus 81 ~~Lk~~ 86 (446)
T PF10165_consen 81 ERLKNY 86 (446)
T ss_pred HHHHcc
Confidence 777554
No 46
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=32.17 E-value=1.9e+02 Score=36.68 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=105.8
Q ss_pred hHHHHHHHHHhcccccCCcccccccchHHHHHhhhc------CCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcchh-
Q 010918 28 LKDALEILIESSKTTVGRSDLASKNILPEVLQLTQS------IPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGV- 100 (497)
Q Consensus 28 ~~~~l~~L~~~~k~~~~R~~~a~~~~~~~~l~il~~------~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i- 100 (497)
-+|.++-+-..-|.-+-|+|.-.|.+|+++=.+..- ...++. +..-|-.|-|+-|+|.+|--.|=..+|-
T Consensus 407 peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsT---LKavLSALWNLSAHcteNKA~iCaVDGAL 483 (2195)
T KOG2122|consen 407 PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKEST---LKAVLSALWNLSAHCTENKAEICAVDGAL 483 (2195)
T ss_pred hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccch---HHHHHHHHhhhhhcccccchhhhcccchH
Confidence 345566666667888889998888888876654210 000222 2333678899999999999999999988
Q ss_pred HHHHHHhcCCC----CC-CCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHhcCCCCCccCceeeeehhhcc
Q 010918 101 GIVLRVLRSPG----VN-LDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLAGVRCQETCDPLCMVIYTCCD 175 (497)
Q Consensus 101 ~~~~~ll~~~~----~~-~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll~~~d~k~~~~~~MViytc~~ 175 (497)
+.++-.|.-.. .. .|+--+++|..-|++|| ++++.+.+-.+---..+++.|+-..-.+|.-.|=-|+|+.-
T Consensus 484 aFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt----~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 484 AFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIAT----CEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred HHHHhhccccCCcchhhhhhcCccHHHHHHhHhhc----cchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence 55555664331 22 25555688888887765 78888888777777778887777777788888999999983
Q ss_pred CCchhhHhhhcccchH
Q 010918 176 GSSGLFKELCGDKGLA 191 (497)
Q Consensus 176 ~s~er~~eL~~~~~i~ 191 (497)
-+ .+.+++.-+.|..
T Consensus 560 R~-p~DQq~LwD~gAv 574 (2195)
T KOG2122|consen 560 RS-PEDQQMLWDDGAV 574 (2195)
T ss_pred CC-HHHHHHHHhcccH
Confidence 33 3455544444333
No 47
>PF15565 Imm16: Immunity protein 16
Probab=32.08 E-value=57 Score=29.00 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=47.6
Q ss_pred hhchhHHHHHhcCCCCCccCceeeeehhhccCCchhhHhhhc-------ccchHHHHHHHHHHhhcCCcchhHHHHHHHH
Q 010918 145 QFFPDEFATLAGVRCQETCDPLCMVIYTCCDGSSGLFKELCG-------DKGLAIMAEIVCTAASVGFKEDWFKFLVSRT 217 (497)
Q Consensus 145 ~~fP~~f~~ll~~~d~k~~~~~~MViytc~~~s~er~~eL~~-------~~~i~i~~e~v~~a~~~~~d~ewl~lli~~~ 217 (497)
..|-+.+..++.++|.++...+|-+.-.=. ..+-|--|.+ ..++.-++..+=.+....| -+|.. ++-..
T Consensus 16 e~Fe~~L~~l~~~~d~~~I~~L~~~F~D~~--d~eVmf~lvh~lE~~~~~~~l~~l~~~~p~m~~~A~-keWa~-il~~R 91 (106)
T PF15565_consen 16 EEFEEALNELAKYPDNDVIDDLCLIFDDET--DHEVMFSLVHFLEHFDMEEYLPALAEAIPQMMINAP-KEWAK-ILHYR 91 (106)
T ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhcCcc--chHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhhH-HHHHH-HHHHH
Confidence 567777777777888877776665542221 1133333322 1244434444433322223 49999 55567
Q ss_pred hHhcCcHHHHHHhh
Q 010918 218 CVEEIHFPQLFFKL 231 (497)
Q Consensus 218 ~le~~~l~~ly~~l 231 (497)
++.++.+...|+++
T Consensus 92 ilNs~~~~~~y~~v 105 (106)
T PF15565_consen 92 ILNSDDARKAYAKV 105 (106)
T ss_pred HHcChHHHHHHHHh
Confidence 78999998888873
No 48
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=30.37 E-value=7.5e+02 Score=27.02 Aligned_cols=76 Identities=22% Similarity=0.230 Sum_probs=42.0
Q ss_pred ccchHHHHHhhhcCCCCCcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHH
Q 010918 51 KNILPEVLQLTQSIPHSSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLAN 130 (497)
Q Consensus 51 ~~~~~~~l~il~~~s~~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgN 130 (497)
..-|+.++..|-+. +... .+--.+.|.+||+|-. ..+... +....++|......+..+...+|=++.+|+-
T Consensus 212 ~~sl~~~i~vLCsi-~~~~-~l~~~~w~~m~nL~~S--~~g~~~-----i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ 282 (464)
T PF11864_consen 212 SESLSPCIEVLCSI-VNSV-SLCKPSWRTMRNLLKS--HLGHSA-----IRTLCDILRSPDPQNKRDINVLRGAVFFLRM 282 (464)
T ss_pred hHHHHHHHHHHhhH-hccc-ccchhHHHHHHHHHcC--ccHHHH-----HHHHHHHHcccCccccccHHHHhhHHHHHHH
Confidence 34444444444432 1111 3444578889999853 222221 2345556644443334567789999999987
Q ss_pred HHhcC
Q 010918 131 VSLAG 135 (497)
Q Consensus 131 ia~~n 135 (497)
...+.
T Consensus 283 ll~~~ 287 (464)
T PF11864_consen 283 LLWGS 287 (464)
T ss_pred HHhcc
Confidence 76665
No 49
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=29.61 E-value=57 Score=34.53 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHHHHhhccccchhhhHHhhcchh---HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHH
Q 010918 67 SSGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGV---GIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHA 141 (497)
Q Consensus 67 ~~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i---~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~ 141 (497)
...+..+..|||.|-|.-+....||........- .....++.... +.........+.+|-|+...|++..+.
T Consensus 233 ~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~---~~~~~~l~~~lrlllNlTn~n~~~c~~ 307 (361)
T PF07814_consen 233 LQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCD---DQVIQLLLLALRLLLNLTNNNPSACEE 307 (361)
T ss_pred hHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHH---HHHHHHHHHHHHHeeeCCCCCccchHh
Confidence 4555678899999999999999999987776442 22222332211 112334678899999999999777665
No 50
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.56 E-value=4.9e+02 Score=28.53 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=64.5
Q ss_pred HHHHHHhhccccchhhhHHhhcchhHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHhhhchhHHHHHh
Q 010918 76 SLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVNLDKDYGIIRIALQVLANVSLAGETHQHAIWCQFFPDEFATLA 155 (497)
Q Consensus 76 clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~~~~~~e~~~~~~r~glQ~LgNia~~n~~~Q~~IW~~~fP~~f~~ll 155 (497)
..+|+-|+-.- ..|-.-|...|+.+.+-+ |..+ .|...-|.++..|-|+...-|..|..|-....|. +.+++
T Consensus 146 aVgCitnLaT~-d~nk~kiA~sGaL~pltr-Laks-----kdirvqrnatgaLlnmThs~EnRr~LV~aG~lpv-LVsll 217 (550)
T KOG4224|consen 146 AVGCITNLATF-DSNKVKIARSGALEPLTR-LAKS-----KDIRVQRNATGALLNMTHSRENRRVLVHAGGLPV-LVSLL 217 (550)
T ss_pred ehhhhhhhhcc-ccchhhhhhccchhhhHh-hccc-----chhhHHHHHHHHHHHhhhhhhhhhhhhccCCchh-hhhhh
Confidence 35677776655 677777787787766655 3222 2456889999999999999999999888878886 66788
Q ss_pred cCCCCCccCceeeeehh
Q 010918 156 GVRCQETCDPLCMVIYT 172 (497)
Q Consensus 156 ~~~d~k~~~~~~MViyt 172 (497)
+..|..+.-|+|--|-|
T Consensus 218 ~s~d~dvqyycttaisn 234 (550)
T KOG4224|consen 218 KSGDLDVQYYCTTAISN 234 (550)
T ss_pred ccCChhHHHHHHHHhhh
Confidence 88877766655544433
No 51
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=27.43 E-value=53 Score=31.63 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhccccchhhhHHhhc
Q 010918 70 CHYLLLSLKLLRNLCAGEITNQKSFIEQ 97 (497)
Q Consensus 70 ~~~l~~clR~LRNlCa~~~~NQ~~i~~~ 97 (497)
.++...|+|+||..|.+...||..+.+.
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~ 102 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH 102 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3678999999999999999999987753
No 52
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=23.66 E-value=61 Score=23.52 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.8
Q ss_pred hHHHHHHHHhhccCChhhHHHHHHh
Q 010918 393 RRDLVAVIGNCAYRRKHIQDEIRER 417 (497)
Q Consensus 393 k~~lvrli~nl~~~~~~~Qd~vr~~ 417 (497)
|..+..++-++|.++|++++.|+..
T Consensus 12 ~~qL~~lL~~l~~~HPei~~~i~~~ 36 (38)
T PF14483_consen 12 KDQLQSLLQSLCERHPEIQQEIRSI 36 (38)
T ss_dssp HHHHHHHHHHHHHHSTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhChhHHHHHHhh
Confidence 5678889999999999999999863
No 53
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=23.18 E-value=1.7e+02 Score=29.93 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHHHhhccccchhhhHHhhcchhHHHHHHhcCCCCC
Q 010918 68 SGCHYLLLSLKLLRNLCAGEITNQKSFIEQTGVGIVLRVLRSPGVN 113 (497)
Q Consensus 68 ~~~~~l~~clR~LRNlCa~~~~NQ~~i~~~~~i~~~~~ll~~~~~~ 113 (497)
.+-.+...|+..|=.+++..+.||-.|...+|+..+..+++..+..
T Consensus 146 ~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~ 191 (257)
T PF08045_consen 146 NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTD 191 (257)
T ss_pred CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcccccc
Confidence 3455677799999999999999999999999999999999887764
No 54
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=23.14 E-value=97 Score=22.93 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhh
Q 010918 392 FRRDLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNL 447 (497)
Q Consensus 392 ~k~~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL 447 (497)
.|..-+..||+++...+..... -.-..++.+. .+- .|.+|..|+-|.+|+-||
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~-~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQP-YLPELLPALI-PLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHH-HHT-TSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHH-HHH-cCCCHHHHHHHHHHHhcC
Confidence 4677788899988666555443 1223344444 333 445568999999999775
No 55
>smart00580 PUG domain in protein kinases, N-glycanases and other nuclear proteins.
Probab=22.54 E-value=1e+02 Score=24.28 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=26.7
Q ss_pred HHHHHHHHhhccC------ChhhHHHHHHhcChHHHhhhccc
Q 010918 394 RDLVAVIGNCAYR------RKHIQDEIRERDGILLLLQQCVT 429 (497)
Q Consensus 394 ~~lvrli~nl~~~------~~~~Qd~vr~~~gi~liL~~c~i 429 (497)
++|+|+|.|.... |+..|+.|....|=..++-.|.+
T Consensus 4 ~dLLr~irNi~~hp~e~k~n~~~~~~l~~~pg~~~~l~~~gF 45 (58)
T smart00580 4 RDLLRALRNILHHPREEKGNPAIKERLGDVPGGFELYFTVGF 45 (58)
T ss_pred HHHHHHHHHHhhCcchhhcCHHHHHHhcCCCcHHHHHHHcCC
Confidence 4688888888876 88889999998666555555443
No 56
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.17 E-value=6.2e+02 Score=28.28 Aligned_cols=126 Identities=18% Similarity=0.242 Sum_probs=80.2
Q ss_pred hHHHHHHHHhhccCCCCCCCcchhhhHHHHhhcccHHHHHHHhhhcCCChhhhhhhhcCCCCCCCcccccccCCCcchhH
Q 010918 315 YSLSILRNICAREDPAGSSSVNRADLVDSLQSHGLIEMFLSLLRDLEPPAIIRKAMRQGENQEGTSAKSAKTCPYIGFRR 394 (497)
Q Consensus 315 ~sL~lL~~Lc~~~~~~s~~~~~~~d~~~~L~~~gLle~lI~LLr~l~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~g~k~ 394 (497)
.+++++..++--+....+ +.+++-+.+.|.+.+.+..++.-+..|.. +.++ -+.|.-
T Consensus 144 avvdLLqELTD~Dv~~es-~egAevLidaLvdg~vlaLLvqnveRLdE------svke---------------ea~gv~- 200 (536)
T KOG2734|consen 144 AVVDLLQELTDEDVLYES-EEGAEVLIDALVDGQVLALLVQNVERLDE------SVKE---------------EADGVH- 200 (536)
T ss_pred HHHHHHHHhhhhcccccc-cccHHHHHHHHHhccHHHHHHHHHHHhhh------cchh---------------hhhhhH-
Confidence 456677666543322222 22334467788888888877766665542 1111 011111
Q ss_pred HHHHHHHhhccCChhhHHHHHHhcChHHHhhhcccCCCCCcchhhhHHhHhhhhcCChHHHHHHHhccc
Q 010918 395 DLVAVIGNCAYRRKHIQDEIRERDGILLLLQQCVTDEDNPFSREWGIWCVRNLLEGNAENQKVVADLEL 463 (497)
Q Consensus 395 ~lvrli~nl~~~~~~~Qd~vr~~~gi~liL~~c~iD~~nP~~rEwai~~iRnL~e~n~~nQ~~i~~L~~ 463 (497)
.-..++-|++--++++...+.+.|-+.++|..|.--..---.+.+|.--+--+++++.+|+..+..|..
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G 269 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG 269 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc
Confidence 124567899989999999999998889999965443333334666666666689999999999888764
Done!