Your job contains 1 sequence.
>010919
MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK
SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG
NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT
LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPF
ACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVD
KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYL
HNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAA
AAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVCLY
SISICLYDLDFSCFTPS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010919
(497 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2055600 - symbol:AT2G45100 species:3702 "Arabi... 787 3.7e-90 3
TAIR|locus:2083579 - symbol:AT3G09360 species:3702 "Arabi... 828 1.3e-82 1
MGI|MGI:1919558 - symbol:Brf1 "BRF1 homolog, subunit of R... 376 2.6e-51 3
UNIPROTKB|Q92994 - symbol:BRF1 "Transcription factor IIIB... 381 3.3e-50 3
POMBASE|SPBC13E7.10c - symbol:brf1 "transcription factor ... 365 1.3e-49 3
UNIPROTKB|F1NQ85 - symbol:BRF1 "Uncharacterized protein" ... 376 2.9e-49 3
UNIPROTKB|F1PRK4 - symbol:BRF1 "Uncharacterized protein" ... 375 2.9e-49 3
UNIPROTKB|J9PB52 - symbol:BRF1 "Uncharacterized protein" ... 365 8.1e-49 3
ZFIN|ZDB-GENE-030131-6334 - symbol:brf1a "BRF1 homolog, s... 425 2.6e-46 2
ZFIN|ZDB-GENE-030131-6248 - symbol:brf1b "BRF1 homolog, s... 371 1.3e-45 3
SGD|S000003478 - symbol:BRF1 "TFIIIB B-related factor" sp... 356 1.7e-44 3
UNIPROTKB|G3X7R9 - symbol:G3X7R9 "Uncharacterized protein... 342 3.0e-44 3
DICTYBASE|DDB_G0281215 - symbol:brf1 "transcription facto... 399 2.0e-41 2
FB|FBgn0038499 - symbol:Brf "Brf" species:7227 "Drosophil... 372 3.8e-41 2
ASPGD|ASPL0000037776 - symbol:AN3116 species:162425 "Emer... 356 3.4e-38 2
RGD|1311158 - symbol:Brf1 "BRF1 homolog, subunit of RNA p... 288 5.2e-36 3
WB|WBGene00000271 - symbol:brf-1 species:6239 "Caenorhabd... 362 7.4e-36 2
CGD|CAL0004048 - symbol:BRF1 species:5476 "Candida albica... 331 3.3e-33 2
UNIPROTKB|P43072 - symbol:TDS4 "Transcription factor IIIB... 331 3.3e-33 2
TAIR|locus:4515102612 - symbol:AT1G30455 species:3702 "Ar... 208 3.0e-29 3
UNIPROTKB|H0YIV6 - symbol:BRF1 "Transcription factor IIIB... 244 1.1e-23 2
UNIPROTKB|F8VS45 - symbol:BRF1 "Transcription factor IIIB... 221 2.7e-21 2
UNIPROTKB|A3KN61 - symbol:BRF1 "Transcription factor IIIB... 221 4.3e-21 2
UNIPROTKB|F8VWT8 - symbol:BRF1 "Transcription factor IIIB... 221 4.3e-21 2
UNIPROTKB|Q3SYD7 - symbol:BRF1 "Transcription factor IIIB... 221 4.3e-21 2
UNIPROTKB|I3LCQ3 - symbol:BRF1 "Uncharacterized protein" ... 218 2.7e-17 1
UNIPROTKB|F8VXJ4 - symbol:BRF1 "Transcription factor IIIB... 146 1.9e-09 1
UNIPROTKB|F8VQ19 - symbol:BRF1 "Transcription factor IIIB... 110 1.5e-07 2
UNIPROTKB|F8VWY1 - symbol:BRF1 "Transcription factor IIIB... 121 9.4e-07 1
UNIPROTKB|F1NXP2 - symbol:GTF2B "Uncharacterized protein"... 131 1.0e-05 1
UNIPROTKB|F2Z5J6 - symbol:GTF2B "Uncharacterized protein"... 131 1.1e-05 1
UNIPROTKB|F2Z4J6 - symbol:LOC786656 "Uncharacterized prot... 130 1.4e-05 1
UNIPROTKB|E2RPG1 - symbol:GTF2B "Uncharacterized protein"... 130 1.4e-05 1
UNIPROTKB|Q00403 - symbol:GTF2B "Transcription initiation... 130 1.4e-05 1
MGI|MGI:2385191 - symbol:Gtf2b "general transcription fac... 130 1.4e-05 1
RGD|619735 - symbol:Gtf2b "general transcription factor I... 130 1.4e-05 1
UNIPROTKB|Q2KIN8 - symbol:GTF2B "Transcription initiation... 128 2.3e-05 1
ZFIN|ZDB-GENE-030131-3544 - symbol:gtf2b "general transcr... 126 4.0e-05 1
WB|WBGene00006648 - symbol:ttb-1 species:6239 "Caenorhabd... 125 4.7e-05 1
FB|FBgn0004915 - symbol:TfIIB "Transcription factor IIB" ... 117 0.00040 1
>TAIR|locus:2055600 [details] [associations]
symbol:AT2G45100 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010440 "stomatal
lineage progression" evidence=RCA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
GO:GO:0005634 GO:GO:0045893 EMBL:CP002685 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 KO:K15196 IPI:IPI00532450
RefSeq:NP_182035.2 UniGene:At.50139 ProteinModelPortal:F4IW19
SMR:F4IW19 PRIDE:F4IW19 EnsemblPlants:AT2G45100.1 GeneID:819117
KEGG:ath:AT2G45100 OMA:LYITENH Uniprot:F4IW19
Length = 557
Score = 787 (282.1 bits), Expect = 3.7e-90, Sum P(3) = 3.7e-90
Identities = 166/307 (54%), Positives = 214/307 (69%)
Query: 1 MEKAFDDMRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 59
+ KA D++ +++AL IG+ D+++ +A F+ IA+ NFTKGR E V +SCLYL CRQ
Sbjct: 71 IRKATDELMNLRDALGIGDDRDDVIVMASNFFRIALDHNFTKGRSKELVFSSCLYLTCRQ 130
Query: 60 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 119
LLIDFS+YL ++VY+LG+VYLQLC +LYI + N K VDPSIF+ +F++ LL G
Sbjct: 131 FKLAVLLIDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYEKLVDPSIFIPRFSNMLLKG 190
Query: 120 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
N K+ TA I+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K SK+DIV IVHICE
Sbjct: 191 AHNNKLVLTATHIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICE 250
Query: 179 ATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 238
ATL KRLIEF +T++ SLT ++ K E + AA P VLC H+D K
Sbjct: 251 ATLTKRLIEFGDTEAASLTADELS--KTEREKETAALRSKRKPNFYKEGVVLCMHQDC-K 307
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV-KASAEENS---SFERESD-S 293
P GLC SCY+EFMT+S GLEGG+DPPAFQ AE+ERM KAS+EEN + + SD S
Sbjct: 308 PVDYGLCESCYDEFMTVSGGLEGGSDPPAFQRAEKERMEEKASSEENDKQVNLDGHSDES 367
Query: 294 PFMSRVD 300
+S VD
Sbjct: 368 STLSDVD 374
Score = 73 (30.8 bits), Expect = 3.7e-90, Sum P(3) = 3.7e-90
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 342 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 380
SD S SD+DD E+D Y EE KI ++ N Y
Sbjct: 364 SDESSTLSDVDDRELDCYFRTPEEVRLVKIFFDHENPGY 402
Score = 72 (30.4 bits), Expect = 3.7e-90, Sum P(3) = 3.7e-90
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 440 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 477
N+ P T +EA M+ +K+ IN D LE+LFD SV
Sbjct: 448 NAPPPATGIEAVDSMVKRKKFRD-INCDYLEELFDASV 484
>TAIR|locus:2083579 [details] [associations]
symbol:AT3G09360 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=RCA] [GO:0010440 "stomatal lineage
progression" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000812 InterPro:IPR011665
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0045893
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
KO:K15196 OMA:YGCDGDE EMBL:AK226688 IPI:IPI00523177
RefSeq:NP_187547.2 UniGene:At.53231 ProteinModelPortal:Q0WVQ3
STRING:Q0WVQ3 EnsemblPlants:AT3G09360.1 GeneID:820092
KEGG:ath:AT3G09360 TAIR:At3g09360 HOGENOM:HOG000265442
InParanoid:Q0WVQ3 PhylomeDB:Q0WVQ3 ProtClustDB:CLSN2681133
Genevestigator:Q0WVQ3 Uniprot:Q0WVQ3
Length = 604
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 175/347 (50%), Positives = 236/347 (68%)
Query: 4 AFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A D++ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQASCLYL CR+ +
Sbjct: 74 ARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQASCLYLTCRELNI 133
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GN 121
LLIDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+ +F++ LL G N
Sbjct: 134 ALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFMDRFSNSLLKGKNN 193
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
K V TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+DIV IVHICEATL
Sbjct: 194 KDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATL 253
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
KRLIEF +TDSG+L + + R++E H+ P S VLC H+D+ KPF
Sbjct: 254 TKRLIEFGDTDSGNLNVNEL--RERESHKRSFTMKPT-----SNKEAVLCMHQDS-KPFG 305
Query: 242 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDK 301
GLC CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN E ++ ++
Sbjct: 306 YGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREEN-----EGGISSLNHDEQ 360
Query: 302 VQSPEPESIGVPKNCTTQTASN-EGEGDHTKTPGVDATTEASDGSDN 347
+ S K C+ + + +G +H T D + SD SD+
Sbjct: 361 LYSDYCSMSKRGKQCSEKGEKDKDGAEEHADTS--DESDNFSDISDD 405
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 104/253 (41%), Positives = 129/253 (50%)
Query: 224 SGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE 283
S VLC H+D+ KPF GLC CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EE
Sbjct: 289 SNKEAVLCMHQDS-KPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREE 347
Query: 284 NSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASD 343
N E ++ +++ S K C S +GE D G + + SD
Sbjct: 348 N-----EGGISSLNHDEQLYSDYCSMSKRGKQC-----SEKGEKDKD---GAEEHADTSD 394
Query: 344 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYXXXXXXXXXXXXXXXXXXXXSYK 403
SDNFSDI D EV+GY++NEEE HYK I W EMN++Y S
Sbjct: 395 ESDNFSDISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNS 454
Query: 404 NCPEGXXXXXXXXXXXXXXXXKSXXXXXXXXXXXXXNSGPAQTALEATRRMLTKKRLSSK 463
NCPE KS N+ P TA+EA RR L KKRLSS
Sbjct: 455 NCPEDARKAFEAAKADAA---KSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSV 511
Query: 464 INYDVLEKLFDDS 476
INYDVLE LFD S
Sbjct: 512 INYDVLESLFDTS 524
>MGI|MGI:1919558 [details] [associations]
symbol:Brf1 "BRF1 homolog, subunit of RNA polymerase III
transcription initiation factor IIIB (S. cerevisiae)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 MGI:MGI:1919558 GO:GO:0005634 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 HOVERGEN:HBG023540
OrthoDB:EOG4NGGMJ EMBL:BC037224 IPI:IPI00319141 UniGene:Mm.196721
ProteinModelPortal:Q8CFK2 SMR:Q8CFK2 STRING:Q8CFK2
PhosphoSite:Q8CFK2 PRIDE:Q8CFK2 UCSC:uc007pfn.1
HOGENOM:HOG000198688 InParanoid:Q8CFK2 Genevestigator:Q8CFK2
GermOnline:ENSMUSG00000011158 Uniprot:Q8CFK2
Length = 676
Score = 376 (137.4 bits), Expect = 2.6e-51, Sum P(3) = 2.6e-51
Identities = 81/186 (43%), Positives = 119/186 (63%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L
Sbjct: 110 AFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLL 169
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGR 144
L + L I N +DP +++ +F LL G K +V TA +L MKRDW+ TGR
Sbjct: 170 LARELCI----NA-PAIDPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGR 223
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 204
+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 224 RPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM-- 281
Query: 205 KKELHE 210
K +L E
Sbjct: 282 KIDLEE 287
Score = 127 (49.8 bits), Expect = 2.6e-51, Sum P(3) = 2.6e-51
Identities = 49/205 (23%), Positives = 80/205 (39%)
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
MK +E E D S T R K+L + ++ L ++S + + + +P A
Sbjct: 281 MKIDLE-EECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKA 339
Query: 242 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSR 298
G + ++ G + + P + E E + A++ N F RE D +
Sbjct: 340 KGALANLSKD----GSGEDATSSPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAA 395
Query: 299 VDKVQSPEP---ESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 355
D P ES+ P ++ + +P D + DG + S IDD E
Sbjct: 396 GDPDGGSRPLALESLLGPLPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLE 455
Query: 356 VDGYLHNEEEKHYKKIIWEEMNREY 380
+D Y+ NE E K +W N EY
Sbjct: 456 IDRYILNESEARVKAELWMRENAEY 480
Score = 78 (32.5 bits), Expect = 2.6e-51, Sum P(3) = 2.6e-51
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +K++SSKINY VL L
Sbjct: 517 ASTAGEAIEKMLEQKKISSKINYSVLRDL 545
Score = 55 (24.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG---LKFSKSDIVKI-VHI 176
N+ DTA + +T GRK + + A LY+ T G + SD++++ V++
Sbjct: 103 NQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYV 162
Query: 177 CEATLM 182
T +
Sbjct: 163 LGKTFL 168
>UNIPROTKB|Q92994 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000126 "transcription factor TFIIIB complex"
evidence=NAS] [GO:0006384 "transcription initiation from RNA
polymerase III promoter" evidence=TAS] [GO:0009303 "rRNA
transcription" evidence=TAS] [GO:0009304 "tRNA transcription"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893
EMBL:CH471061 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0009303 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 Reactome:REACT_1788 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:AL512355 GO:GO:0006384
GO:GO:0000126 KO:K15196 EMBL:U28838 EMBL:U75276 EMBL:AJ297406
EMBL:AJ297407 EMBL:AJ297408 EMBL:AK096471 EMBL:AK294899
EMBL:AK295579 EMBL:BC016743 EMBL:BC071637 EMBL:BC086856
EMBL:BC103859 IPI:IPI00016859 IPI:IPI00157643 IPI:IPI00216075
IPI:IPI00334140 IPI:IPI00607889 IPI:IPI01011010 IPI:IPI01012378
PIR:I39065 RefSeq:NP_001229715.1 RefSeq:NP_001229716.1
RefSeq:NP_001229717.1 RefSeq:NP_001229718.1 RefSeq:NP_001229719.1
RefSeq:NP_001510.2 RefSeq:NP_663718.1 UniGene:Hs.424484
ProteinModelPortal:Q92994 SMR:Q92994 IntAct:Q92994
MINT:MINT-2859415 STRING:Q92994 PhosphoSite:Q92994 DMDM:20455319
PaxDb:Q92994 PRIDE:Q92994 Ensembl:ENST00000327359
Ensembl:ENST00000379937 Ensembl:ENST00000392557
Ensembl:ENST00000440513 Ensembl:ENST00000446501
Ensembl:ENST00000546474 Ensembl:ENST00000548421 GeneID:2972
KEGG:hsa:2972 UCSC:uc001yql.2 UCSC:uc010axg.1 CTD:2972
GeneCards:GC14M105675 HGNC:HGNC:11551 MIM:604902 neXtProt:NX_Q92994
PharmGKB:PA164741296 HOVERGEN:HBG023540 InParanoid:Q92994
OMA:YGCDGDE OrthoDB:EOG4NGGMJ PhylomeDB:Q92994 ChiTaRS:BRF1
GenomeRNAi:2972 NextBio:11787 ArrayExpress:Q92994 Bgee:Q92994
CleanEx:HS_BRF1 Genevestigator:Q92994 GermOnline:ENSG00000185024
GO:GO:0009304 Uniprot:Q92994
Length = 677
Score = 381 (139.2 bits), Expect = 3.3e-50, Sum P(3) = 3.3e-50
Identities = 84/205 (40%), Positives = 126/205 (61%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVC 125
D S+ L +NVY LG +L L + L I N +DP +++ +F LL G K +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFA-HLLEFGEKNHEVS 204
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 205 MTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRL 264
Query: 186 IEFENTDSGSLTIEDFMARKKELHE 210
EFE+T + LTI++FM K +L E
Sbjct: 265 TEFEDTPTSQLTIDEFM--KIDLEE 287
Score = 110 (43.8 bits), Expect = 3.3e-50, Sum P(3) = 3.3e-50
Identities = 53/209 (25%), Positives = 83/209 (39%)
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
MK +E E D S T R K+L + ++ L ++S + + + +P A
Sbjct: 281 MKIDLE-EECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKA 339
Query: 242 CGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRV 299
G S ++ T + L G D E E + A++ N RE
Sbjct: 340 KGGLASLAKDGSTEDTASSLCGEED------TEDEELEAAASHLNKDLYRELLGGAPGSS 393
Query: 300 DKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDI 351
+ SPE P ++G + TA++ G D + + D + DG + S I
Sbjct: 394 EAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGI 452
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREY 380
DD E+D Y+ NE E K +W N EY
Sbjct: 453 DDLEIDRYILNESEARVKAELWMRENAEY 481
Score = 79 (32.9 bits), Expect = 3.3e-50, Sum P(3) = 3.3e-50
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +K++SSKINY VL L
Sbjct: 518 ASTAREAIEKMLEQKKISSKINYSVLRGL 546
>POMBASE|SPBC13E7.10c [details] [associations]
symbol:brf1 "transcription factor TFIIIB complex
subunit Brf1" species:4896 "Schizosaccharomyces pombe" [GO:0000126
"transcription factor TFIIIB complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006384 "transcription initiation from
RNA polymerase III promoter" evidence=TAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 PomBase:SPBC13E7.10c GO:GO:0045893 GO:GO:0046872
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 GO:GO:0006384
GO:GO:0000126 HOGENOM:HOG000198688 PIR:T40176 RefSeq:NP_596265.2
STRING:Q9P6R0 EnsemblFungi:SPBC13E7.10c.1 GeneID:2540071
OrthoDB:EOG40P7GP NextBio:20801208 Uniprot:Q9P6R0
Length = 492
Score = 365 (133.5 bits), Expect = 1.3e-49, Sum P(3) = 1.3e-49
Identities = 76/189 (40%), Positives = 119/189 (62%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
AL + E + A R++ +A+ NF KGRR++ V ASCLY+ CR +LIDFS+ L
Sbjct: 95 ALKLNERH--IEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKTSHMLIDFSDIL 152
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDIL 132
INV++LG+ +L+LC+VL N L +DPS+++ +F L G +V + A ++
Sbjct: 153 QINVFKLGSTFLKLCRVL----RPN-LPLLDPSLYISRFASLLEFGPETHRVANDAIRLV 207
Query: 133 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 192
A M RDW+ GR+P+G+CGA L ++A + + S ++V +V + + T+ KRL EF+ T+
Sbjct: 208 ARMNRDWMQIGRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADITIQKRLDEFKLTE 267
Query: 193 SGSLTIEDF 201
SG L+I DF
Sbjct: 268 SGDLSIADF 276
Score = 97 (39.2 bits), Expect = 1.3e-49, Sum P(3) = 1.3e-49
Identities = 32/138 (23%), Positives = 60/138 (43%)
Query: 259 LEGGADPPAFQVAERERMVKASAEENSSFERESDSPF---------------MSRVDKVQ 303
LEG +DPP+F ++ + A N +E SP +S+ KV+
Sbjct: 281 LEGQSDPPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVE 340
Query: 304 SPE-PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHN 362
S E P + + + + +GD + + + S+ D+DD E++ L +
Sbjct: 341 SQETPVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLD 400
Query: 363 EEEKHYKKIIWEEMNREY 380
++E K +W E+N++Y
Sbjct: 401 KDEILTKTQVWMELNKDY 418
Score = 83 (34.3 bits), Expect = 1.3e-49, Sum P(3) = 1.3e-49
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 440 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 475
+ G A TA E+ + M+ ++ S KINY+ L+ LFD+
Sbjct: 454 SDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489
>UNIPROTKB|F1NQ85 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:AADN02003843 EMBL:AADN02003838
EMBL:AADN02003839 EMBL:AADN02003840 EMBL:AADN02003841
EMBL:AADN02003842 IPI:IPI00588765 Ensembl:ENSGALT00000019132
Uniprot:F1NQ85
Length = 593
Score = 376 (137.4 bits), Expect = 2.9e-49, Sum P(3) = 2.9e-49
Identities = 79/196 (40%), Positives = 121/196 (61%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 91 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 148
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
D S+ L +NVY LG +L L + L I N +DP +++ +F L G N +V
Sbjct: 149 DLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFAHMLEFGDKNHEVSM 203
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++++V +CE+TL KRL
Sbjct: 204 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLT 263
Query: 187 EFENTDSGSLTIEDFM 202
EFE T + LTI++FM
Sbjct: 264 EFEYTPTSQLTIDEFM 279
Score = 98 (39.6 bits), Expect = 2.9e-49, Sum P(3) = 2.9e-49
Identities = 47/193 (24%), Positives = 82/193 (42%)
Query: 195 SLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT 254
S +EDF + + L N+ PK G+ L K D+ + S + E
Sbjct: 309 SKKLEDFEGEISSYQDEIEIELENSRPKAKGVFANLSK-SDSIEDNTL----SIFGEEEA 363
Query: 255 ISEGLEGGADP--PAF--QVAERERMVKASAEENSSFERESDSPFMS-RVDKVQSPEPE- 308
E LE A+ F ++ E++R+ E+ + +++P ++ + P P
Sbjct: 364 EDEELEAAANHLNKDFCNELLEKDRLKPG---EDGDCKNGNEAPVRPPALESLLGPLPTA 420
Query: 309 -SIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKH 367
S+G+ ++ +S + E PG + DG + S IDD E+D Y+ NE E
Sbjct: 421 ASLGITESIKECISSKDRE------PGENT----GDGELDLSGIDDSEIDRYILNETEAQ 470
Query: 368 YKKIIWEEMNREY 380
K +W + N +Y
Sbjct: 471 IKAELWMKENADY 483
Score = 79 (32.9 bits), Expect = 2.9e-49, Sum P(3) = 2.9e-49
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +K++SSKINY+VL L
Sbjct: 520 ASTAGEAIEKMLEQKKISSKINYNVLRDL 548
Score = 67 (28.6 bits), Expect = 4.9e-46, Sum P(3) = 4.9e-46
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 250 EEFMTISEGLEGGADPPAFQVAER----ERMVKASAEENSSFERESDSPFMSRVD-KVQS 304
+EFM I LE DPP+F ++ +++ KA +++ FE E S + ++ ++++
Sbjct: 276 DEFMRID--LEEECDPPSFTAGQKKLKIQQLEKALSKKLEDFEGEISS-YQDEIEIELEN 332
Query: 305 PEPESIGVPKN 315
P++ GV N
Sbjct: 333 SRPKAKGVFAN 343
>UNIPROTKB|F1PRK4 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
PRINTS:PR00685 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:AAEX03006120 EMBL:AAEX03006121
Ensembl:ENSCAFT00000029237 Uniprot:F1PRK4
Length = 616
Score = 375 (137.1 bits), Expect = 2.9e-49, Sum P(3) = 2.9e-49
Identities = 79/197 (40%), Positives = 122/197 (61%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 32 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 89
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVC 125
D S+ L +NVY LG +L L + L I N +DP +++ +F LL G K +V
Sbjct: 90 DLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFA-HLLEFGEKNHEVS 143
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 144 MTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRL 203
Query: 186 IEFENTDSGSLTIEDFM 202
EFE+T + LT+++FM
Sbjct: 204 TEFEDTPTSQLTVDEFM 220
Score = 103 (41.3 bits), Expect = 2.9e-49, Sum P(3) = 2.9e-49
Identities = 52/208 (25%), Positives = 79/208 (37%)
Query: 186 IEFENT-DSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG- 243
I+ E D S T R K+L + ++ L ++S + + + +P A G
Sbjct: 222 IDLEGECDPPSYTAGQRKLRLKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGA 281
Query: 244 ---LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVD 300
L R E T S L G DP E E + ++ N F +E +S
Sbjct: 282 LATLTRDGSVEDTTSS--LFGEEDP------EDEELEAVASHLNKDFYQELLGDSISSSS 333
Query: 301 KV--------QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 352
+V + P ES+ P ++ + + D T DG + S ID
Sbjct: 334 EVAGGAEGGSRPPALESLLGPLPTAASLGISDSIRECISSQSQDPTDPCGDGELDLSGID 393
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREY 380
D E+D Y+ NE E K +W N EY
Sbjct: 394 DLEIDRYILNEAEARVKAELWMRENAEY 421
Score = 78 (32.5 bits), Expect = 2.9e-49, Sum P(3) = 2.9e-49
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +K++SSKINY VL L
Sbjct: 458 ASTAGEAIEKMLEQKKISSKINYSVLRDL 486
>UNIPROTKB|J9PB52 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685 GO:GO:0005634
GO:GO:0045893 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
GeneTree:ENSGT00390000010349 EMBL:AAEX03006120 EMBL:AAEX03006121
Ensembl:ENSCAFT00000046229 Uniprot:J9PB52
Length = 562
Score = 365 (133.5 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 75/172 (43%), Positives = 112/172 (65%)
Query: 33 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLC 150
I N +DP +++ +F LL G K +V TA +L MKRDW+ TGR+PSGLC
Sbjct: 61 I----NA-PAIDPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLC 114
Query: 151 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 115 GAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 166
Score = 103 (41.3 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 52/208 (25%), Positives = 79/208 (37%)
Query: 186 IEFENT-DSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACG- 243
I+ E D S T R K+L + ++ L ++S + + + +P A G
Sbjct: 168 IDLEGECDPPSYTAGQRKLRLKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGA 227
Query: 244 ---LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVD 300
L R E T S L G DP E E + ++ N F +E +S
Sbjct: 228 LATLTRDGSVEDTTSS--LFGEEDP------EDEELEAVASHLNKDFYQELLGDSISSSS 279
Query: 301 KV--------QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 352
+V + P ES+ P ++ + + D T DG + S ID
Sbjct: 280 EVAGGAEGGSRPPALESLLGPLPTAASLGISDSIRECISSQSQDPTDPCGDGELDLSGID 339
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREY 380
D E+D Y+ NE E K +W N EY
Sbjct: 340 DLEIDRYILNEAEARVKAELWMRENAEY 367
Score = 78 (32.5 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +K++SSKINY VL L
Sbjct: 404 ASTAGEAIEKMLEQKKISSKINYSVLRDL 432
>ZFIN|ZDB-GENE-030131-6334 [details] [associations]
symbol:brf1a "BRF1 homolog, subunit of RNA
polymerase III transcription initiation factor IIIBa" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6334
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0003743 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 KO:K15196
HOVERGEN:HBG023540 OrthoDB:EOG4NGGMJ HOGENOM:HOG000198688
HSSP:P61999 EMBL:BC046877 IPI:IPI00488634 RefSeq:NP_956192.1
UniGene:Dr.20342 ProteinModelPortal:Q802Z8 GeneID:334402
KEGG:dre:334402 CTD:334402 InParanoid:Q802Z8 NextBio:20810386
Uniprot:Q802Z8
Length = 661
Score = 425 (154.7 bits), Expect = 2.6e-46, Sum P(2) = 2.6e-46
Identities = 124/376 (32%), Positives = 192/376 (51%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A FY +A++++ TKGR++ V A+CLYL CR + P +L+D S+ L +NVY LG +L
Sbjct: 108 AFNFYKMALSKHLTKGRKSTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLV 167
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGR 144
L + L I N +DP +++ +F +LL G K +V TA +L MKRDW+ TGR
Sbjct: 168 LARELCI----NA-PAIDPCLYIPRFA-QLLEFGEKSHEVSMTALRLLQRMKRDWMHTGR 221
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 204
+PSGLCGAAL V+A H + + +++ +V +CEATL KRL EFE+T + LTIE+FM
Sbjct: 222 RPSGLCGAALLVAARMHEFRRTIKEVISVVKVCEATLRKRLYEFEDTPTSELTIEEFMKT 281
Query: 205 KKELH---EGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 261
E AA L K+ + + L K D + CG Y++ + + LE
Sbjct: 282 DLEQECDPPSFAAGLRKQ--KLKQIEQELAKKVDDIEGEICG-----YQDEIEVE--LES 332
Query: 262 GADPPA---FQVAERERMVKASAEENSSFERESD-----SPFMSRVDKVQSPEPESIGVP 313
P A + RE V S +S + E D + + ++ Q + E + +
Sbjct: 333 -CRPKARGIYASCSREDDV-VSLASSSHLDGEDDELRAAASHLYGENEEQEQDGERVSLT 390
Query: 314 KNCTTQ-------TASNEGEGDHTKTPGVDATT--EASDGSDNFSDIDDFEVDGYLHNEE 364
K + T+++ G + G + EA G + S ID+ E+D Y+ N++
Sbjct: 391 KRPSLSLLLGALPTSASLGLSESITKMGEEKENDVEAEGGELDLSGIDEDEIDRYILNDK 450
Query: 365 EKHYKKIIWEEMNREY 380
E K +W N +Y
Sbjct: 451 EVKVKTELWMIQNADY 466
Score = 85 (35.0 bits), Expect = 2.6e-46, Sum P(2) = 2.6e-46
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +KR+S+KINYDVL+ L
Sbjct: 503 ANTADEAIEKMLEQKRISTKINYDVLKDL 531
>ZFIN|ZDB-GENE-030131-6248 [details] [associations]
symbol:brf1b "BRF1 homolog, subunit of RNA
polymerase III transcription initiation factor IIIBb" species:7955
"Danio rerio" [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 ZFIN:ZDB-GENE-030131-6248
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 KO:K15196 HOVERGEN:HBG023540 HSSP:P61999
EMBL:BC060523 IPI:IPI00500469 RefSeq:NP_956183.1 UniGene:Dr.7329
ProteinModelPortal:Q6P9Z3 STRING:Q6P9Z3 GeneID:334316
KEGG:dre:334316 CTD:334316 InParanoid:Q6P9Z3 NextBio:20810348
Uniprot:Q6P9Z3
Length = 693
Score = 371 (135.7 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 81/197 (41%), Positives = 120/197 (60%)
Query: 9 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
RQ+ N + + + A F+ + V+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 90 RQIHNLGSQLQLNQHCLDTAFNFFKMVVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 149
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVC 125
D S+ L +NVY LG +L L + L I N VDP +++ +F +L G K +V
Sbjct: 150 DLSDLLQVNVYILGKTFLLLARELCI----NA-PAVDPCLYIPRFA-HMLEFGEKTHEVS 203
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE TL KRL
Sbjct: 204 MTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHEFRRTVKEVISVVKVCETTLRKRL 263
Query: 186 IEFENTDSGSLTIEDFM 202
EFE T + SLTI++FM
Sbjct: 264 TEFEETPTSSLTIDEFM 280
Score = 84 (34.6 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +K++SSKINYDVL L
Sbjct: 524 ASTAGEAIEKMLEQKKISSKINYDVLRDL 552
Score = 73 (30.8 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 330 TKTPGVDATTEASDGSD-NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 380
T+T V+ E SD + + ID+ E++ Y+ NE E K +W + N EY
Sbjct: 440 TETTNVE---EKSDSGELDLDGIDEEEIEKYILNEIEVEAKTELWMKQNEEY 488
Score = 50 (22.7 bits), Expect = 3.3e-43, Sum P(3) = 3.3e-43
Identities = 19/94 (20%), Positives = 38/94 (40%)
Query: 250 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES 309
+EFM + LE DPP+F +++ ++ +E E S D++++ S
Sbjct: 277 DEFMRVD--LEKECDPPSFVAGQKKVKMQQLEQELVKKLEEYQGEIDSYRDEIETQLAGS 334
Query: 310 IGVPKNCTTQTASNEGEGDHTKTPGVDATTEASD 343
+ + E + + T G+ +A D
Sbjct: 335 SRTKMKGIYASYAREDDDSLSVTSGLTGDEDAED 368
>SGD|S000003478 [details] [associations]
symbol:BRF1 "TFIIIB B-related factor" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0070893
"transposon integration" evidence=IDA] [GO:0090074 "negative
regulation of protein homodimerization activity" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0001026 "TFIIIB-type transcription factor
activity" evidence=IC] [GO:0000994 "RNA polymerase III core
binding" evidence=IDA;IPI] [GO:0001156 "TFIIIC-class transcription
factor binding" evidence=IDA;IPI] [GO:0001112 "DNA-dependent
transcriptional open complex formation" evidence=IMP] [GO:0070898
"RNA polymerase III transcriptional preinitiation complex assembly"
evidence=IMP;IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0000126 "transcription factor TFIIIB complex" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 SGD:S000003478 GO:GO:0045893 EMBL:BK006941
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 PROSITE:PS00782 EMBL:Y07703 Reactome:REACT_83470
GO:GO:0090074 GO:GO:0000994 GO:GO:0001156 GO:GO:0070898
Reactome:REACT_87991 GO:GO:0000126 PDB:1NGM PDBsum:1NGM
GO:GO:0001026 GO:GO:0070893 InterPro:IPR023486 KO:K15196
HOGENOM:HOG000198688 OrthoDB:EOG40P7GP EMBL:M91073 EMBL:L00630
EMBL:Z73031 PIR:A44072 RefSeq:NP_011762.1 ProteinModelPortal:P29056
SMR:P29056 DIP:DIP-191N IntAct:P29056 MINT:MINT-2783113
STRING:P29056 PaxDb:P29056 PeptideAtlas:P29056 EnsemblFungi:YGR246C
GeneID:853161 KEGG:sce:YGR246C CYGD:YGR246c
GeneTree:ENSGT00390000010349 OMA:CRKERTH EvolutionaryTrace:P29056
NextBio:973264 Genevestigator:P29056 GermOnline:YGR246C
GO:GO:0001112 Uniprot:P29056
Length = 596
Score = 356 (130.4 bits), Expect = 1.7e-44, Sum P(3) = 1.7e-44
Identities = 75/207 (36%), Positives = 129/207 (62%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L K KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 89 (36.4 bits), Expect = 1.7e-44, Sum P(3) = 1.7e-44
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 333 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 380
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADF 494
Score = 66 (28.3 bits), Expect = 1.7e-44, Sum P(3) = 1.7e-44
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 441 SGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
SG TA ++ + ML K S KINYD ++ LF
Sbjct: 564 SGDFTTA-DSVKNMLQKASFSKKINYDAIDGLF 595
>UNIPROTKB|G3X7R9 [details] [associations]
symbol:G3X7R9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000812 InterPro:IPR011665
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0043488 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 PANTHER:PTHR11618 OMA:YGCDGDE
GeneTree:ENSGT00390000010349 EMBL:DAAA02053372 EMBL:DAAA02053373
EMBL:DAAA02053374 EMBL:DAAA02053375 EMBL:DAAA02053376
Ensembl:ENSBTAT00000044278 Uniprot:G3X7R9
Length = 639
Score = 342 (125.4 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 76/207 (36%), Positives = 126/207 (60%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+++ T+GRRT V A+CLYL CR + P +L
Sbjct: 32 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRTAHVVAACLYLVCRTEGTPRILR 89
Query: 68 DFSNY--LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--K 123
+ + +++V+E +L + + Y+ E+ L+ +P +++ +F LL G K +
Sbjct: 90 HLAVHGGFSVHVFESNRTFLVISR--YLCVEAEALR--NPCLYIPRFA-HLLEFGEKNHE 144
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL K
Sbjct: 145 VSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRK 204
Query: 184 RLIEFENTDSGSLTIEDFMARKKELHE 210
RL EFE+T + LT+++FM K +L E
Sbjct: 205 RLTEFEDTPTSQLTVDEFM--KIDLEE 229
Score = 95 (38.5 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 49/209 (23%), Positives = 79/209 (37%)
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
MK +E E D S T R K+L + ++ L +++ + + + +P A
Sbjct: 223 MKIDLE-EECDPPSYTAGQRKLRLKQLEQVLSKQLEAVEGEITTYQDAIEIELENSRPKA 281
Query: 242 CGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFM 296
G S ++ + L G D E E + A++ N F +E P
Sbjct: 282 KGALASLTKDGSVEDSTSSLCGEED------TEDEELEAAASHLNKDFYQELLGGSVPGS 335
Query: 297 SRVDKV-----QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI 351
S V + P ES+ P ++ + +P + DG + S I
Sbjct: 336 SEAAGVPEEGRRPPALESLLGPLPTAASLGISDSIRECISSPSHEPKDACGDGELDLSGI 395
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREY 380
DD E+D Y+ NE E K +W N EY
Sbjct: 396 DDLEIDRYILNEAEARVKAELWMRENAEY 424
Score = 77 (32.2 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +K++SSKINY VL L
Sbjct: 461 ASTAGEAIEKMLEQKKISSKINYSVLRGL 489
>DICTYBASE|DDB_G0281215 [details] [associations]
symbol:brf1 "transcription factor IIIB subunit"
species:44689 "Dictyostelium discoideum" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;IC] [GO:0000126 "transcription factor TFIIIB
complex" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006384 "transcription
initiation from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 PRINTS:PR00685 dictyBase:DDB_G0281215
GO:GO:0045893 GenomeReviews:CM000152_GR EMBL:AAFI02000040
GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 InterPro:IPR021752
Pfam:PF11781 GO:GO:0006384 GO:GO:0000126 KO:K15196
RefSeq:XP_640891.1 ProteinModelPortal:Q54U85 STRING:Q54U85
EnsemblProtists:DDB0231089 GeneID:8622948 KEGG:ddi:DDB_G0281215
InParanoid:Q54U85 OMA:CASENSQ Uniprot:Q54U85
Length = 706
Score = 399 (145.5 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 86/202 (42%), Positives = 125/202 (61%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E A + Q+ N+L I ++ A+R + +A+ NFTKGR+T V A+CLY+ CR++
Sbjct: 74 VENARKKLDQIGNSLRI--RSHLIDSAQRTFELAMENNFTKGRQTRLVAAACLYIVCRRE 131
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P LLIDFS L +NV+ + +LQL ++L I L VDPS F+ +F L G
Sbjct: 132 RTPHLLIDFSENLQVNVFIVAGTFLQLIKLLNIQ-----LPIVDPSFFIQRFASALEFGD 186
Query: 121 NKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K V TA ++A MKRDW++ GRKPSG+CGA+LY+++ HG K S +IV +V I E
Sbjct: 187 QTKDVIATANKLVARMKRDWMSIGRKPSGICGASLYIASKIHGFKRSMKEIVHVVKIGEQ 246
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
TL+ RL EF T + +L ++F
Sbjct: 247 TLINRLDEFRKTPTATLRFDEF 268
Score = 70 (29.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 333 PGVDATTEAS--DGSDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREY 380
P + +T + S +D ++ D E+D YL H+++ K+ IW E+N+E+
Sbjct: 520 PTITSTIDQSVFAPNDELENLSDEELDFYLEHDKDTVKKKEEIWVELNKEW 570
Score = 45 (20.9 bits), Expect = 8.5e-39, Sum P(2) = 8.5e-39
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 298 RVDKVQSPEPESIGVPKNCTTQ---TASNEGEGDHTKTPGVDATTEASDGSDN 347
++ + QS EP++ P + TT T + + + + P +D T + D+
Sbjct: 464 KIKESQSQEPDTTPPPSSTTTTQTTTTTTTSQNNESSAP-IDLPTPINKTMDS 515
>FB|FBgn0038499 [details] [associations]
symbol:Brf "Brf" species:7227 "Drosophila melanogaster"
[GO:0006359 "regulation of transcription from RNA polymerase III
promoter" evidence=ISS;IDA;IPI] [GO:0000126 "transcription factor
TFIIIB complex" evidence=ISS] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005667 "transcription factor complex"
evidence=IPI] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IDA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001046 "core
promoter sequence-specific DNA binding" evidence=IPI] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0045893 GO:GO:0008270 GO:GO:0006352
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0006383 GO:GO:0006359 eggNOG:COG1405
PANTHER:PTHR11618 EMBL:AF262374 HSSP:P61999
ProteinModelPortal:Q9NB72 SMR:Q9NB72 STRING:Q9NB72 PaxDb:Q9NB72
PRIDE:Q9NB72 FlyBase:FBgn0038499 InParanoid:Q9NB72
OrthoDB:EOG4SJ3VV ArrayExpress:Q9NB72 Bgee:Q9NB72 Uniprot:Q9NB72
Length = 662
Score = 372 (136.0 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
Identities = 113/393 (28%), Positives = 187/393 (47%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++KA D+ + L + S A F+ +A+ R+ T+GR++ + A+C+Y+ CR +
Sbjct: 87 IKKAKKDITLLCQQLQL--SQHYADTALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTE 144
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
LLID S+ I YELG YL+L L I N+ +DP +++ +F +RL G
Sbjct: 145 GTSHLLIDISDVQQICSYELGRTYLKLSHALCI----NI-PSLDPCLYIMRFANRLQLGA 199
Query: 121 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V TA I+ MK+D + +GR+P+GLCGAAL ++A H + D++ +V I E+
Sbjct: 200 KTHEVSMTALRIVQRMKKDCMHSGRRPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHES 259
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHE---GVAANLPNNGPKVSGMNE----VLCK 232
TL KRL EF T SG LT+E+FM E + A + ++ M E L K
Sbjct: 260 TLRKRLSEFAETPSGGLTLEEFMTVDLEREQDPPSFKAARKKDRERIKDMGEHELTELQK 319
Query: 233 HKDTGKPFACG-LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERES 291
D G S Y + +T +GL P+ + E+ ++ EE+ F +S
Sbjct: 320 EIDAHLEKDLGKYSNSVYRQ-LTKGKGLSP-LSSPSTPNSSSEKDIEL--EESRQFIEQS 375
Query: 292 DSPFMSRV----DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDN 347
++ + + + V+ EP + + V+ + +
Sbjct: 376 NAEVIKELIAKNEDVKKSEPGGLVAGIEGLRPDIEAICRVTQSDLEDVEKAKQPQEQELI 435
Query: 348 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREY 380
D++D E+D Y+ EEE K +W+ +N EY
Sbjct: 436 TDDLNDDELDQYVLTEEESVAKLEMWKNLNAEY 468
Score = 94 (38.1 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 442 GPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
GP+ TA EA +ML +K++SSKINY++L+ L D
Sbjct: 501 GPSSTAGEAIEKMLQEKKISSKINYEILKTLTD 533
>ASPGD|ASPL0000037776 [details] [associations]
symbol:AN3116 species:162425 "Emericella nidulans"
[GO:0000126 "transcription factor TFIIIB complex" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IEA] [GO:0003743 "translation initiation
factor activity" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
GO:GO:0005634 GO:GO:0045893 GO:GO:0008270 EMBL:BN001306
GO:GO:0006352 EMBL:AACD01000051 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405
PANTHER:PTHR11618 KO:K15196 HOGENOM:HOG000198688 OMA:CRKERTH
RefSeq:XP_660720.1 ProteinModelPortal:Q5B8L4 STRING:Q5B8L4
EnsemblFungi:CADANIAT00009960 GeneID:2873798 KEGG:ani:AN3116.2
OrthoDB:EOG4SJ8P6 Uniprot:Q5B8L4
Length = 713
Score = 356 (130.4 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 108/371 (29%), Positives = 180/371 (48%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYL 85
A + + +AV NF +GRRT+ V A CLY+ACR Q +LIDF++ L INV++LG Y
Sbjct: 121 AGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRTYK 180
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGR 144
L L + ++ +DP +++F +L G +V A I+ M RDW+TTGR
Sbjct: 181 ALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVASEAVRIVQRMNRDWMTTGR 240
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 204
+P+G+CGAAL ++A + + + ++V +V + E T+ +RL EF +T+SG LT++ F +
Sbjct: 241 RPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNEFSSTESGELTVDQFRSV 300
Query: 205 KKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPF---ACGLCRSCYEEFMTISEGLE 260
+ E H+ + G K + + +T A GL S ++G
Sbjct: 301 QLENTHDPPSFTRARQGRKPA--RSIKRNAAETAAEIEEDAEGLEESEVPPRRVDADGFT 358
Query: 261 GGADP--PAFQVAERERMVKASA--EENSSFERESDSPFMSRVDKVQSPEPESIGVPKNC 316
P PA A+++ A+ E+S+ + K+ SP PE + +
Sbjct: 359 IPNLPIDPALIQADKDSQSSAAVGGPEDSTAPLAKGRTKGNGRPKLPSPSPEQVASEEAL 418
Query: 317 TTQTASNEGEGDHT-KTPGVDATTEASDGSDNFSDIDD--FEVDGYLHN----EEEKHYK 369
+ + +G + ++ AT SDN +ID+ F+ D + N E K
Sbjct: 419 ENEMSEYLAKGSNMIESIECGATRPKKVVSDN-PEIDEAEFDSDPEVSNCLLAPHEVEIK 477
Query: 370 KIIWEEMNREY 380
+ IW N++Y
Sbjct: 478 ERIWVHENKDY 488
Score = 85 (35.0 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 475
A T EATRRML ++ S KINY +LE LF +
Sbjct: 541 ASTPAEATRRMLERRGFSKKINYRLLETLFGE 572
>RGD|1311158 [details] [associations]
symbol:Brf1 "BRF1 homolog, subunit of RNA polymerase III
transcription initiation factor IIIB (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017025 "TBP-class
protein binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 RGD:1311158 GO:GO:0005634 GO:GO:0045893
GO:GO:0008270 GO:GO:0006352 GO:GO:0003743 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 KO:K15196 CTD:2972 OrthoDB:EOG4NGGMJ
GeneTree:ENSGT00390000010349 EMBL:CH474034 IPI:IPI00366169
RefSeq:NP_001100231.1 UniGene:Rn.205393 Ensembl:ENSRNOT00000019689
GeneID:299347 KEGG:rno:299347 UCSC:RGD:1311158 NextBio:645266
Uniprot:D4A8W8
Length = 686
Score = 288 (106.4 bits), Expect = 5.2e-36, Sum P(3) = 5.2e-36
Identities = 65/148 (43%), Positives = 94/148 (63%)
Query: 65 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-- 122
+L+D S+ L +NVY LG +L L + L I N +DP +++ +F LL G K
Sbjct: 158 MLLDLSDLLQVNVYVLGKTFLLLARELCI----NA-PAIDPCLYIPRFA-HLLEFGEKNH 211
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL
Sbjct: 212 EVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLR 271
Query: 183 KRLIEFENTDSGSLTIEDFMARKKELHE 210
KRL EFE+T + LTI++FM K +L E
Sbjct: 272 KRLTEFEDTPTSQLTIDEFM--KIDLEE 297
Score = 125 (49.1 bits), Expect = 5.2e-36, Sum P(3) = 5.2e-36
Identities = 49/205 (23%), Positives = 81/205 (39%)
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
MK +E E D S T R K+L + ++ L ++S + + + +P A
Sbjct: 291 MKIDLE-EECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISTYQDAIEIELENSRPKA 349
Query: 242 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSR 298
G + ++ G + + P + E E + A++ N F RE +D +
Sbjct: 350 KGALANLSKD----GSGEDATSSPFCEEDTEDEELEAAASHMNKDFYRELLGADGGSEAA 405
Query: 299 VDKVQSPEP---ESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 355
D P ES+ P ++ + +P D + DG + S IDD E
Sbjct: 406 EDADGGSRPLALESLLGPLPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLE 465
Query: 356 VDGYLHNEEEKHYKKIIWEEMNREY 380
+D Y+ NE E K +W N EY
Sbjct: 466 IDRYILNESEARVKAELWMRENAEY 490
Score = 78 (32.5 bits), Expect = 5.2e-36, Sum P(3) = 5.2e-36
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +K++SSKINY VL L
Sbjct: 527 ASTAGEAIEKMLEQKKISSKINYSVLRDL 555
>WB|WBGene00000271 [details] [associations]
symbol:brf-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006898 GO:GO:0040007
GO:GO:0045893 GO:GO:0002119 GO:GO:0008270 GO:GO:0000003
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 EMBL:FO080734
KO:K15196 GeneTree:ENSGT00390000010349 PIR:T16368
RefSeq:NP_495526.1 ProteinModelPortal:Q20429 SMR:Q20429
STRING:Q20429 PaxDb:Q20429 EnsemblMetazoa:F45E12.2.1
EnsemblMetazoa:F45E12.2.2 GeneID:174199 KEGG:cel:CELE_F45E12.2
UCSC:F45E12.2 CTD:174199 WormBase:F45E12.2 InParanoid:Q20429
OMA:CRLENTA NextBio:882969 Uniprot:Q20429
Length = 759
Score = 362 (132.5 bits), Expect = 7.4e-36, Sum P(2) = 7.4e-36
Identities = 117/374 (31%), Positives = 173/374 (46%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
++ A FY + V+RN T+GR V A C+Y+ CR ++ LL+DFS+ INV++LG
Sbjct: 102 MNTAFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRN 161
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 142
L + L I N L DP +++ +F L G +K V + A ++ MKRDW++T
Sbjct: 162 LNYLSRSLRI----N-LPSTDPCLYIMRFACVLDFGDKQKEVVNLATRLVQRMKRDWMST 216
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+G+CGAAL ++A + S +DIV++VHI E + KRL EF T SGSLTI++F
Sbjct: 217 GRRPTGICGAALLIAARSLNFNRSINDIVRVVHISEGVIRKRLDEFSQTPSGSLTIDEFS 276
Query: 203 ARKKELHEGVAA-----------NLPNNGPKVSGMNEVLCK---HKDTG--KPFACGLCR 246
E E A L + M E L + H + K +
Sbjct: 277 TVDLEHSEDPPAYRESRRKAREDQLRKEAEQAESMKEQLGEMEAHVEAALDKKRKEKFSK 336
Query: 247 SCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE 306
S Y ISE L G + Q E +V++S E + E + ++ V +
Sbjct: 337 SPYARM--ISENL--GKENDKMQTLT-ETVVESSGLEKGADEMVRNE-IINTVFNAAEED 390
Query: 307 PESIGVPKNCTTQTASNEGEG-DHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEE 365
P + + S E G T P + +D DI D E+D Y+ E E
Sbjct: 391 PCTSNSLEKYDKYRPSLESLGIKRTSEPEPEPVPHPIVNADLEEDISDSEIDSYILTESE 450
Query: 366 KHYKKIIWEEMNRE 379
K W + N E
Sbjct: 451 VAIKTDYWMKANGE 464
Score = 58 (25.5 bits), Expect = 7.4e-36, Sum P(2) = 7.4e-36
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 450 ATRRMLTKKRLSSKINYDVLEKL 472
A +++ +K+LS+K+NY++L+ L
Sbjct: 503 AVEKVIAEKKLSNKVNYEMLKDL 525
>CGD|CAL0004048 [details] [associations]
symbol:BRF1 species:5476 "Candida albicans" [GO:0000126
"transcription factor TFIIIB complex" evidence=ISS] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000994
"RNA polymerase III core binding" evidence=IEA] [GO:0001156
"TFIIIC-class transcription factor binding" evidence=IEA]
[GO:0001112 "DNA-dependent transcriptional open complex formation"
evidence=IEA] [GO:0090074 "negative regulation of protein
homodimerization activity" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0070893 "transposon integration" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0004048 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0006384
GO:GO:0000126 InterPro:IPR023486 EMBL:Z47202 PIR:B55483
RefSeq:XP_711715.1 RefSeq:XP_712189.1 ProteinModelPortal:P43072
SMR:P43072 STRING:P43072 GeneID:3646221 GeneID:3646689
KEGG:cal:CaO19.13970 KEGG:cal:CaO19.6649 KO:K15196 Uniprot:P43072
Length = 553
Score = 331 (121.6 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 71/195 (36%), Positives = 117/195 (60%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 95 IKRIAAALKI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLI 152
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 153 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAK 208
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 209 DAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLN 268
Query: 187 EFENTDSGSLTIEDF 201
EF+ T +G+L+++ F
Sbjct: 269 EFKKTKAGTLSVKSF 283
Score = 56 (24.8 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 442 GPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
G ++A ++ + ++K +S KINYD L+ L
Sbjct: 516 GTPRSAADSAKMYISKTSVSKKINYDSLKGL 546
>UNIPROTKB|P43072 [details] [associations]
symbol:TDS4 "Transcription factor IIIB 70 kDa subunit"
species:237561 "Candida albicans SC5314" [GO:0000126 "transcription
factor TFIIIB complex" evidence=ISS] [GO:0006384 "transcription
initiation from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000812 InterPro:IPR011665 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 CGD:CAL0004048 GO:GO:0045893
GO:GO:0046872 GO:GO:0008270 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AACQ01000165 EMBL:AACQ01000186 GO:GO:0006384
GO:GO:0000126 InterPro:IPR023486 EMBL:Z47202 PIR:B55483
RefSeq:XP_711715.1 RefSeq:XP_712189.1 ProteinModelPortal:P43072
SMR:P43072 STRING:P43072 GeneID:3646221 GeneID:3646689
KEGG:cal:CaO19.13970 KEGG:cal:CaO19.6649 KO:K15196 Uniprot:P43072
Length = 553
Score = 331 (121.6 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 71/195 (36%), Positives = 117/195 (60%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 95 IKRIAAALKI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLI 152
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 153 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAK 208
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 209 DAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLN 268
Query: 187 EFENTDSGSLTIEDF 201
EF+ T +G+L+++ F
Sbjct: 269 EFKKTKAGTLSVKSF 283
Score = 56 (24.8 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 442 GPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
G ++A ++ + ++K +S KINYD L+ L
Sbjct: 516 GTPRSAADSAKMYISKTSVSKKINYDSLKGL 546
>TAIR|locus:4515102612 [details] [associations]
symbol:AT1G30455 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013150 Pfam:PF00382 Pfam:PF07741
EMBL:CP002684 GO:GO:0005634 GO:GO:0045893 GO:GO:0008270
GO:GO:0006352 GO:GO:0003743 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 UniGene:At.69479
IPI:IPI00542754 RefSeq:NP_001117389.1 ProteinModelPortal:F4I4V4
SMR:F4I4V4 EnsemblPlants:AT1G30455.1 GeneID:6240845
KEGG:ath:AT1G30455 Uniprot:F4I4V4
Length = 254
Score = 208 (78.3 bits), Expect = 3.0e-29, Sum P(3) = 3.0e-29
Identities = 39/74 (52%), Positives = 55/74 (74%)
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 148
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 149 LCGAALYVSALTHG 162
+CGAALY +AL+HG
Sbjct: 61 ICGAALYTAALSHG 74
Score = 99 (39.9 bits), Expect = 3.0e-29, Sum P(3) = 3.0e-29
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 261 GGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVD 300
GG+DPP+FQ AE+ERM KAS EEN + +S +S +D
Sbjct: 74 GGSDPPSFQRAEKERMEEKASTEENDKQQNSDESSTLSDLD 114
Score = 84 (34.6 bits), Expect = 1.1e-27, Sum P(3) = 1.1e-27
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 319 QTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNR 378
Q A E + T D + SD S SD+DD E+D Y N +E H +II++ N
Sbjct: 82 QRAEKERMEEKASTEENDKQ-QNSDESSTLSDLDDGELDCYFRNPKEVHLVEIIFDHENP 140
Query: 379 EY 380
Y
Sbjct: 141 GY 142
Score = 62 (26.9 bits), Expect = 3.0e-29, Sum P(3) = 3.0e-29
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 440 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
N+ P TA+EA M+ +K+ N D LE+L D S
Sbjct: 184 NAPPPATAMEAVDSMVKRKKFPDT-NCDYLEELLDTS 219
>UNIPROTKB|H0YIV6 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1 Ensembl:ENST00000546417
Uniprot:H0YIV6
Length = 185
Score = 244 (91.0 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 52/111 (46%), Positives = 74/111 (66%)
Query: 102 QVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 159
Q DP +++ +F LL G K +V TA +L MKRDW+ TGR+PSGLCGAAL V+A
Sbjct: 34 QNDPCLYIPRFA-HLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAAR 92
Query: 160 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE 210
H + + +++ +V +CE+TL KRL EFE+T + LTI++FM K +L E
Sbjct: 93 MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM--KIDLEE 141
Score = 53 (23.7 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 250 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 303
+EFM I LE DPP++ +R+ +K + S E + S D ++
Sbjct: 132 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 183
>UNIPROTKB|F8VS45 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1 IPI:IPI01021031
ProteinModelPortal:F8VS45 SMR:F8VS45 Ensembl:ENST00000549655
ArrayExpress:F8VS45 Bgee:F8VS45 Uniprot:F8VS45
Length = 237
Score = 221 (82.9 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFMARKKELHE 210
EFE+T + LTI++FM K +L E
Sbjct: 62 EFEDTPTSQLTIDEFM--KIDLEE 83
Score = 55 (24.4 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 250 EEFMTISEGLEGGADPPAFQVAERE-RMVKASAEENSSFER-ESD-SPFMSRVD-KVQSP 305
+EFM I LE DPP++ +R+ RM + + E E + S + ++ ++++
Sbjct: 74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENS 131
Query: 306 EPESIG----VPKNCTTQ-TASNE-GEGD 328
P++ G + K+ +T+ TAS+ GE D
Sbjct: 132 RPKAKGGLASLAKDGSTEDTASSLCGEED 160
>UNIPROTKB|A3KN61 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
EMBL:AL512355 UniGene:Hs.424484 HGNC:HGNC:11551 ChiTaRS:BRF1
EMBL:BC133655 IPI:IPI00844553 SMR:A3KN61 STRING:A3KN61
Ensembl:ENST00000379932 Uniprot:A3KN61
Length = 184
Score = 221 (82.9 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFMARKKELHE 210
EFE+T + LTI++FM K +L E
Sbjct: 62 EFEDTPTSQLTIDEFM--KIDLEE 83
Score = 53 (23.7 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 250 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 303
+EFM I LE DPP++ +R+ +K + S E + S D ++
Sbjct: 74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 125
>UNIPROTKB|F8VWT8 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
IPI:IPI01020829 ProteinModelPortal:F8VWT8 SMR:F8VWT8
Ensembl:ENST00000552127 ArrayExpress:F8VWT8 Bgee:F8VWT8
Uniprot:F8VWT8
Length = 155
Score = 221 (82.9 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFMARKKELHE 210
EFE+T + LTI++FM K +L E
Sbjct: 62 EFEDTPTSQLTIDEFM--KIDLEE 83
Score = 53 (23.7 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 250 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 303
+EFM I LE DPP++ +R+ +K + S E + S D ++
Sbjct: 74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 125
>UNIPROTKB|Q3SYD7 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
EMBL:AL512355 UniGene:Hs.424484 HGNC:HGNC:11551 ChiTaRS:BRF1
EMBL:BC103861 IPI:IPI00651667 SMR:Q3SYD7 STRING:Q3SYD7
Ensembl:ENST00000551787 Uniprot:Q3SYD7
Length = 161
Score = 221 (82.9 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFMARKKELHE 210
EFE+T + LTI++FM K +L E
Sbjct: 62 EFEDTPTSQLTIDEFM--KIDLEE 83
Score = 53 (23.7 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 250 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 303
+EFM I LE DPP++ +R+ +K + S E + S D ++
Sbjct: 74 DEFMKID--LEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIE 125
>UNIPROTKB|I3LCQ3 [details] [associations]
symbol:BRF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 GO:GO:0043488 Gene3D:1.10.472.10
InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618
GeneTree:ENSGT00390000010349 Ensembl:ENSSSCT00000031183 OMA:DEICSYQ
Uniprot:I3LCQ3
Length = 99
Score = 218 (81.8 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIGVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFMARKKELHE 210
EFE+T + LT+++FM K +L E
Sbjct: 62 EFEDTPTSQLTVDEFM--KIDLEE 83
>UNIPROTKB|F8VXJ4 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
IPI:IPI01021144 ProteinModelPortal:F8VXJ4 SMR:F8VXJ4
Ensembl:ENST00000550692 ArrayExpress:F8VXJ4 Bgee:F8VXJ4
Uniprot:F8VXJ4
Length = 64
Score = 146 (56.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 33 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 93 I 93
I
Sbjct: 61 I 61
>UNIPROTKB|F8VQ19 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000812 InterPro:IPR011665 Pfam:PF07741 GO:GO:0005634
GO:GO:0045893 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
IPI:IPI01021565 Ensembl:ENST00000547562 ArrayExpress:F8VQ19
Bgee:F8VQ19 Uniprot:F8VQ19
Length = 281
Score = 110 (43.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 53/209 (25%), Positives = 83/209 (39%)
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
MK +E E D S T R K+L + ++ L ++S + + + +P A
Sbjct: 1 MKIDLE-EECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKA 59
Query: 242 CGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRV 299
G S ++ T + L G D E E + A++ N RE
Sbjct: 60 KGGLASLAKDGSTEDTASSLCGEED------TEDEELEAAASHLNKDLYRELLGGAPGSS 113
Query: 300 DKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDI 351
+ SPE P ++G + TA++ G D + + D + DG + S I
Sbjct: 114 EAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGI 172
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREY 380
DD E+D Y+ NE E K +W N EY
Sbjct: 173 DDLEIDRYILNESEARVKAELWMRENAEY 201
Score = 79 (32.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKL 472
A TA EA +ML +K++SSKINY VL L
Sbjct: 238 ASTAREAIEKMLEQKKISSKINYSVLRGL 266
>UNIPROTKB|F8VWY1 [details] [associations]
symbol:BRF1 "Transcription factor IIIB 90 kDa subunit"
species:9606 "Homo sapiens" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013150 Pfam:PF00382
GO:GO:0006355 GO:GO:0008270 GO:GO:0006352 GO:GO:0043488
Gene3D:1.10.472.10 InterPro:IPR013763 SUPFAM:SSF47954
PANTHER:PTHR11618 EMBL:AL512355 HGNC:HGNC:11551 ChiTaRS:BRF1
IPI:IPI01025938 ProteinModelPortal:F8VWY1 SMR:F8VWY1
Ensembl:ENST00000550208 ArrayExpress:F8VWY1 Bgee:F8VWY1
Uniprot:F8VWY1
Length = 45
Score = 121 (47.7 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 170
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + ++
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEV 45
>UNIPROTKB|F1NXP2 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:AADN02012841 IPI:IPI00571339 Ensembl:ENSGALT00000010015
Uniprot:F1NXP2
Length = 306
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 45/188 (23%), Positives = 84/188 (44%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 104 MMNAFKEITNMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQE 161
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + I+ E+G + + + L E++V + F+ +F L G
Sbjct: 162 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNL--GL 214
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K+V A I + GR P + AA+Y+++ K ++ +I I + + T
Sbjct: 215 PKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVT 274
Query: 181 LMK--RLI 186
+ + RLI
Sbjct: 275 IRQSYRLI 282
>UNIPROTKB|F2Z5J6 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
InterPro:IPR023486 GeneTree:ENSGT00390000006671 OMA:VLRWRKW
EMBL:CU179630 EMBL:CU151869 Ensembl:ENSSSCT00000007587
Uniprot:F2Z5J6
Length = 316
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 45/189 (23%), Positives = 86/189 (45%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I+ + + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEILSLQGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>UNIPROTKB|F2Z4J6 [details] [associations]
symbol:LOC786656 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
OMA:WRAFDPD InterPro:IPR023486 IPI:IPI00697087 UniGene:Bt.39806
GeneTree:ENSGT00390000006671 EMBL:DAAA02007976
ProteinModelPortal:F2Z4J6 SMR:F2Z4J6 PRIDE:F2Z4J6
Ensembl:ENSBTAT00000044137 Uniprot:F2Z4J6
Length = 316
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/189 (24%), Positives = 85/189 (44%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>UNIPROTKB|E2RPG1 [details] [associations]
symbol:GTF2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 OMA:WRAFDPD InterPro:IPR023486 CTD:2959
GeneTree:ENSGT00390000006671 EMBL:AAEX03004837 RefSeq:XP_537085.1
ProteinModelPortal:E2RPG1 SMR:E2RPG1 PRIDE:E2RPG1
Ensembl:ENSCAFT00000032192 GeneID:479960 KEGG:cfa:479960
NextBio:20855065 Uniprot:E2RPG1
Length = 316
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/189 (24%), Positives = 85/189 (44%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>UNIPROTKB|Q00403 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046966 "thyroid hormone receptor
binding" evidence=IPI] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 Reactome:REACT_116125 GO:GO:0019048
GO:GO:0005654 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006368 GO:GO:0006367
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
Reactome:REACT_1788 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 EMBL:AL445991 PDB:1VOL PDBsum:1VOL PDB:1C9B
PDBsum:1C9B HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
EMBL:X59268 EMBL:M76766 EMBL:AK289822 EMBL:AB451296 EMBL:BC020597
EMBL:S44184 IPI:IPI00022820 PIR:S17654 RefSeq:NP_001505.1
UniGene:Hs.481852 PDB:1DL6 PDB:1RLY PDB:1RO4 PDB:1TFB PDB:2PHG
PDBsum:1DL6 PDBsum:1RLY PDBsum:1RO4 PDBsum:1TFB PDBsum:2PHG
ProteinModelPortal:Q00403 SMR:Q00403 DIP:DIP-1077N IntAct:Q00403
MINT:MINT-156550 STRING:Q00403 PhosphoSite:Q00403 DMDM:135629
PaxDb:Q00403 PeptideAtlas:Q00403 PRIDE:Q00403 DNASU:2959
Ensembl:ENST00000370500 GeneID:2959 KEGG:hsa:2959 UCSC:uc001dmo.4
GeneCards:GC01M089318 HGNC:HGNC:4648 MIM:189963 neXtProt:NX_Q00403
PharmGKB:PA29035 InParanoid:Q00403 PhylomeDB:Q00403 ChiTaRS:GTF2B
EvolutionaryTrace:Q00403 GenomeRNAi:2959 NextBio:11730
PMAP-CutDB:Q00403 ArrayExpress:Q00403 Bgee:Q00403 CleanEx:HS_GTF2B
Genevestigator:Q00403 GermOnline:ENSG00000137947 Uniprot:Q00403
Length = 316
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/189 (24%), Positives = 85/189 (44%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>MGI|MGI:2385191 [details] [associations]
symbol:Gtf2b "general transcription factor IIB"
species:10090 "Mus musculus" [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0046966 "thyroid hormone
receptor binding" evidence=ISO] InterPro:IPR000812
InterPro:IPR013137 InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271
PRINTS:PR00685 PROSITE:PS51134 MGI:MGI:2385191 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006352
GO:GO:0001047 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F EMBL:BC016637
IPI:IPI00153874 RefSeq:NP_663521.1 UniGene:Mm.271756
ProteinModelPortal:P62915 SMR:P62915 STRING:P62915
PhosphoSite:P62915 PaxDb:P62915 PRIDE:P62915
Ensembl:ENSMUST00000029938 GeneID:229906 KEGG:mmu:229906
InParanoid:P62915 NextBio:379735 Bgee:P62915 CleanEx:MM_GTF2B
Genevestigator:P62915 GermOnline:ENSMUSG00000028271 Uniprot:P62915
Length = 316
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/189 (24%), Positives = 85/189 (44%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>RGD|619735 [details] [associations]
symbol:Gtf2b "general transcription factor IIB" species:10116
"Rattus norvegicus" [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IEA] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA;ISO] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 RGD:619735 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006352
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD InterPro:IPR023486
CTD:2959 HOVERGEN:HBG017914 OrthoDB:EOG4QRH4F
GeneTree:ENSGT00390000006671 EMBL:X65948 EMBL:BC085345
IPI:IPI00200556 PIR:S26299 RefSeq:NP_112303.1 UniGene:Rn.6109
ProteinModelPortal:P62916 SMR:P62916 IntAct:P62916 STRING:P62916
PRIDE:P62916 Ensembl:ENSRNOT00000015032 GeneID:81673 KEGG:rno:81673
InParanoid:P62916 NextBio:615268 Genevestigator:P62916
Uniprot:P62916
Length = 316
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 46/189 (24%), Positives = 85/189 (44%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>UNIPROTKB|Q2KIN8 [details] [associations]
symbol:GTF2B "Transcription initiation factor IIB"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782
HOGENOM:HOG000108634 KO:K03124 InterPro:IPR023486 EMBL:BC112570
IPI:IPI00697087 RefSeq:NP_001039607.1 UniGene:Bt.39806
ProteinModelPortal:Q2KIN8 SMR:Q2KIN8 STRING:Q2KIN8 PRIDE:Q2KIN8
GeneID:513231 KEGG:bta:513231 CTD:2959 HOVERGEN:HBG017914
InParanoid:Q2KIN8 OrthoDB:EOG4QRH4F NextBio:20870763 Uniprot:Q2KIN8
Length = 316
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 46/189 (24%), Positives = 85/189 (44%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAEAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>ZFIN|ZDB-GENE-030131-3544 [details] [associations]
symbol:gtf2b "general transcription factor IIB"
species:7955 "Danio rerio" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017025 "TBP-class protein
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
InterPro:IPR013150 Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 ZFIN:ZDB-GENE-030131-3544 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 PANTHER:PTHR11618 PROSITE:PS00782
KO:K03124 InterPro:IPR023486 CTD:2959 HOVERGEN:HBG017914
HSSP:Q00403 EMBL:BC055569 IPI:IPI00501186 RefSeq:NP_955991.1
UniGene:Dr.78599 ProteinModelPortal:Q7SX98 SMR:Q7SX98 STRING:Q7SX98
GeneID:324823 KEGG:dre:324823 NextBio:20808979 ArrayExpress:Q7SX98
Uniprot:Q7SX98
Length = 316
Score = 126 (49.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 44/190 (23%), Positives = 87/190 (45%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + I+ + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MLNAFKEITTMADRINLPRN--IIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + I+ E+G + + + L E++V + F+ +F L G
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNL---G 223
Query: 121 NKKVCDTARDILA--SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
K A +A +++ D + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 224 LPKQVQMAATYIARKAVELD-LVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVAD 282
Query: 179 ATLMK--RLI 186
T+ + RLI
Sbjct: 283 VTIRQSYRLI 292
>WB|WBGene00006648 [details] [associations]
symbol:ttb-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 HOGENOM:HOG000108634 KO:K03124 OMA:WRAFDPD
InterPro:IPR023486 EMBL:FO081767 RefSeq:NP_503146.1
ProteinModelPortal:O16991 SMR:O16991 STRING:O16991 PaxDb:O16991
EnsemblMetazoa:W03F9.5.1 EnsemblMetazoa:W03F9.5.2
EnsemblMetazoa:W03F9.5.3 GeneID:178544 KEGG:cel:CELE_W03F9.5
UCSC:W03F9.5.1 CTD:178544 WormBase:W03F9.5
GeneTree:ENSGT00390000006671 InParanoid:O16991 NextBio:901568
Uniprot:O16991
Length = 306
Score = 125 (49.1 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 46/182 (25%), Positives = 81/182 (44%)
Query: 9 RQMKNALN-IGESDEIVHV-------AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
RQM A++ I E E +H+ A R + + +G+ E A+CLY+ACR+
Sbjct: 102 RQMTAAMSLIREMSERIHLPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKD 161
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + ++ E+G + + + L E+N L+Q+ + F+ +F L LP
Sbjct: 162 GVPRTFKEICAVSRVSKKEIGRCFKIIVRSL----ETN-LEQITSADFMSRFCGNLSLP- 215
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
N R ++ D + GR P + AA+Y+++ K S +I + E
Sbjct: 216 -NSIQAAATRIAKCAVDMD-LVAGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAAEI 273
Query: 180 TL 181
T+
Sbjct: 274 TV 275
>FB|FBgn0004915 [details] [associations]
symbol:TfIIB "Transcription factor IIB" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0001174 "transcriptional start site selection at RNA polymerase
II promoter" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS;IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0051101
"regulation of DNA binding" evidence=IDA] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA]
InterPro:IPR000812 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF08271 PRINTS:PR00685 PROSITE:PS51134
EMBL:AE014134 GO:GO:0046872 GO:GO:0008270 GO:GO:0006357
GO:GO:0005667 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 GO:GO:0051101 eggNOG:COG1405 PANTHER:PTHR11618
PROSITE:PS00782 GO:GO:0001174 KO:K03124 InterPro:IPR023486
GeneTree:ENSGT00390000006671 EMBL:M88164 EMBL:M91081 EMBL:U02879
EMBL:U35148 EMBL:BT011459 EMBL:BT015269 PIR:A42695
RefSeq:NP_476888.1 UniGene:Dm.4476 ProteinModelPortal:P29052
SMR:P29052 DIP:DIP-17603N IntAct:P29052 MINT:MINT-900118
STRING:P29052 PaxDb:P29052 PRIDE:P29052 EnsemblMetazoa:FBtr0080025
EnsemblMetazoa:FBtr0333489 GeneID:34430 KEGG:dme:Dmel_CG5193
CTD:34430 FlyBase:FBgn0004915 InParanoid:P29052 OMA:CNDETER
OrthoDB:EOG4N02WP PhylomeDB:P29052 GenomeRNAi:34430 NextBio:788458
Bgee:P29052 GermOnline:CG5193 Uniprot:P29052
Length = 315
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 50/200 (25%), Positives = 89/200 (44%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKR-FYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
AF ++ M + +N+ ++ IV A F + +N KGR + ++CLY+ACRQ+
Sbjct: 116 AFKEISSMADRINLPKT--IVDRANNLFKQVHDGKNL-KGRSNDAKASACLYIACRQEGV 172
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGN 121
P + I+ E+G + + L E++V + + F+ +F L LP
Sbjct: 173 PRTFKEICAVSKISKKEIGRCFKLTLKAL----ETSV-DLITTADFMCRFCANLDLPN-- 225
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
V A I I GR P + AA+Y+++ K S+ +I I + + T+
Sbjct: 226 -MVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTI 284
Query: 182 MKRLIEFENTDSGSLTIEDF 201
++ + + L EDF
Sbjct: 285 -RQSYKLMYPHAAKLFPEDF 303
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 497 448 0.00091 118 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 612 (65 KB)
Total size of DFA: 277 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.32u 0.11s 41.43t Elapsed: 00:00:02
Total cpu time: 41.32u 0.11s 41.43t Elapsed: 00:00:02
Start: Tue May 21 03:34:04 2013 End: Tue May 21 03:34:06 2013