BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010919
(497 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449485890|ref|XP_004157302.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 663
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 298/526 (56%), Positives = 370/526 (70%), Gaps = 54/526 (10%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF+DMR M+N LN+GESDEI+ VA FY IA+ RNFT+GR E VQA+CLY+ACR+K
Sbjct: 71 LNKAFEDMRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQAACLYIACREK 130
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+KP+LLIDFSNYL INVY LGAV+LQLC+VL + + V K VDPS+F+ KFT LL G
Sbjct: 131 NKPYLLIDFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIDKFTQCLLGGT 190
Query: 121 N-----KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
K+V TA I+ SMKRDW+ TGRKPSGLCGAALY+SAL++G+K +KSDI+KIVH
Sbjct: 191 KDDGMKKEVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVKCTKSDIIKIVH 250
Query: 176 ICEATLMKRLIEFENTDSGSLT--------------------------------IEDFMA 203
IC+ATL KRLIEFENT+SGSLT +E+F+
Sbjct: 251 ICDATLTKRLIEFENTESGSLTNTCLLILVQALQHIDLLEYLPSGHADISEKMNMEEFIV 310
Query: 204 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKD-TGKPFACGLCRSCYEEFMTISEGLEGG 262
+L + + NNG +EVLC HK+ KP+A GLCRSCY++F+ +S GL+GG
Sbjct: 311 MADKLKG--SNSYTNNGSNALS-DEVLCVHKNECQKPYALGLCRSCYDDFVELSGGLDGG 367
Query: 263 ADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES----IGVPKNCTT 318
++PPAFQ AE+ERM KA+ EE S + + F + + E ES + + +
Sbjct: 368 SNPPAFQSAEKERMEKATVEEGSD-DCSAIGKFSQGLKPCNNTEKESDNVHVDASETASF 426
Query: 319 QTASNEGEGDHTKTPGVDAT--------TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKK 370
+ A +G D + P D T ASD S+N+SDIDD EVDGYLHNEEEKHYKK
Sbjct: 427 KEAEAKGTADEQRGPDDDVNKVGADDLGTCASDDSENWSDIDDVEVDGYLHNEEEKHYKK 486
Query: 371 IIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEK 430
IIWEEMNREYLEEQAAK+AAAAAAK A EA+++NC E L+AA++LA AAAAAVAKSRKE+
Sbjct: 487 IIWEEMNREYLEEQAAKDAAAAAAKKAYEANFQNCSEDLKAAKDLAEAAAAAVAKSRKER 546
Query: 431 QQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
Q+KRAAEAKN+ PAQTA EATR+ML KKRLSSKINYDVL+KLFD+S
Sbjct: 547 QRKRAAEAKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFDES 592
>gi|449436026|ref|XP_004135795.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 643
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 297/526 (56%), Positives = 369/526 (70%), Gaps = 54/526 (10%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF+DMR M+N LN+GESDEI+ VA FY IA+ RNFT+GR E VQA+CLY+ACR+K
Sbjct: 71 LNKAFEDMRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQAACLYIACREK 130
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+KP+LLIDFSNYL INVY LGAV+LQLC+VL + + V K VDPS+F+ KFT LL G
Sbjct: 131 NKPYLLIDFSNYLRINVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIDKFTQCLLGGT 190
Query: 121 N-----KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
K+V TA I+ SMKRDW+ TGRKPSGLCGAALY+SAL++G+K +KSDI+KIVH
Sbjct: 191 KDDGMKKEVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVKCTKSDIIKIVH 250
Query: 176 ICEATLMKRLIEFENTDSGSLT--------------------------------IEDFMA 203
IC+ATL KRLIEFENT+SGSLT +E+F+
Sbjct: 251 ICDATLTKRLIEFENTESGSLTNTCLLILVQALQHIDLLEYLPSGHADISEKMNMEEFIV 310
Query: 204 RKKELHEGVAANLPNNGPKVSGMNEVLCKHKD-TGKPFACGLCRSCYEEFMTISEGLEGG 262
+L +N N + +EVLC HK+ KP+A GLCRSCY++F+ +S GL+GG
Sbjct: 311 MADKLK---GSNSYTNNGSSALSDEVLCVHKNECQKPYALGLCRSCYDDFVELSGGLDGG 367
Query: 263 ADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES----IGVPKNCTT 318
++PPAFQ AE+ERM KA+ EE S + + F + + E ES + + +
Sbjct: 368 SNPPAFQSAEKERMEKATVEEGSD-DCSAIGKFSQGLKPCNNTEKESDNVHVDASETASF 426
Query: 319 QTASNEGEGDHTKTPGVDAT--------TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKK 370
+ A +G D + P D T ASD S+N+SDIDD EVDGYLHNEEEKHYKK
Sbjct: 427 KEAEAKGTADEQRGPDDDVNKVGADDLGTCASDDSENWSDIDDVEVDGYLHNEEEKHYKK 486
Query: 371 IIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEK 430
IIWEEMNREYLEEQAAK+AAAAAAK A EA+++NC E L+AA++LA AAAAAVAKSRKE+
Sbjct: 487 IIWEEMNREYLEEQAAKDAAAAAAKKAYEANFQNCSEDLKAAKDLAEAAAAAVAKSRKER 546
Query: 431 QQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
Q+KRAAEAKN+ PAQTA EATR+ML KKRLSSKINYDVL+KLFD+S
Sbjct: 547 QRKRAAEAKNATPAQTAAEATRQMLNKKRLSSKINYDVLDKLFDES 592
>gi|296085890|emb|CBI31214.3| unnamed protein product [Vitis vinifera]
Length = 622
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 297/485 (61%), Positives = 364/485 (75%), Gaps = 13/485 (2%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ A+ ++ + NA+ + D I+ A FY IA+ RNFT+GRR EQV A+CLY+ACR+
Sbjct: 71 LNDAYAEIGHIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAAACLYIACREN 130
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
KPFLLIDFS +L INVY LGAV+LQLC++L + + V K VDPS+F+H+F L
Sbjct: 131 KKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIHRFAAGLPGET 190
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
N V TA I+ASMKRDW+ TGRKPSGLCGAALY+SAL++GLK SK+DIVKIVHICEAT
Sbjct: 191 NMGVSKTALRIIASMKRDWLQTGRKPSGLCGAALYISALSYGLKCSKTDIVKIVHICEAT 250
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNN-GPKVSGMNEVLCKHKDTGK- 238
L KRLIEFENT+SGSLTIE+F + +EL + ++ +N G V G E+LC+HK +GK
Sbjct: 251 LTKRLIEFENTESGSLTIEEFNMKAEELEKEYSSTKQSNIGSTVPGKGELLCEHKGSGKP 310
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS-----SFERESDS 293
PFA GLC CY EF+ +S GLEGG++PPAFQ AER+RM KA+AEEN+ ++ S S
Sbjct: 311 PFAHGLCEICYGEFIKLSGGLEGGSEPPAFQRAERDRMAKAAAEENADSNQIQLDKGSSS 370
Query: 294 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV-DATTEASDGSDNFSDID 352
P + + + EP+SIG + + AS + EG + G D A D S++ SDID
Sbjct: 371 PDVCGNESSKLAEPKSIGA----SDKQASID-EGAPSDLHGADDENANAGDESESLSDID 425
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D EVDGYLHNE+EK +KKIIWE MN+EYLEEQAAKEAAAAAAK A EAS+K+ PEGL+AA
Sbjct: 426 DVEVDGYLHNEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASFKDNPEGLKAA 485
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
QELAAA AAAVAKSRKE+QQKRAAEAKN+ PAQTA EATR+MLTKKRLSSKINYDVLEKL
Sbjct: 486 QELAAATAAAVAKSRKERQQKRAAEAKNTVPAQTAAEATRQMLTKKRLSSKINYDVLEKL 545
Query: 473 FDDSV 477
FDDSV
Sbjct: 546 FDDSV 550
>gi|224106357|ref|XP_002314140.1| predicted protein [Populus trichocarpa]
gi|222850548|gb|EEE88095.1| predicted protein [Populus trichocarpa]
Length = 541
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 270/480 (56%), Positives = 329/480 (68%), Gaps = 45/480 (9%)
Query: 2 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 61
E+A DDM +KN L +GE+ IV+ A +Y IAV RNFT+GRRT+QVQA+CLY+ACR+
Sbjct: 50 ERARDDMLNIKNGLGMGENLGIVNQAMVYYRIAVERNFTRGRRTDQVQAACLYIACRENR 109
Query: 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 121
KP+LLIDFS YL IN+Y LGAV+LQLC+VL + + + K DPSIF+HK+T L G N
Sbjct: 110 KPYLLIDFSIYLQINIYVLGAVFLQLCKVLNLTEHAICQKLHDPSIFIHKYTASLSGGKN 169
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
K++ D A I+ASM WI TGR PS L GAALY+SAL+HGL SKSDI+++VH+C TL
Sbjct: 170 KEISDDALTIIASMNYHWIQTGRTPSALWGAALYISALSHGLNCSKSDILRLVHVCGKTL 229
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP-NNGPKVSGMNEVLCKHKDTGKP- 239
KRL+EFENT+SGSLT+E EL E ++LP N + S E+LC+HK T +P
Sbjct: 230 SKRLVEFENTESGSLTVE-------ELKE---SSLPRRNFGEPSSSKELLCQHKGTNRPS 279
Query: 240 FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRV 299
F GLC+ CY I G +GG DPPAFQ AE +RM K+S N SDS +
Sbjct: 280 FGFGLCKDCY----AIVIGFDGGTDPPAFQNAESQRMKKSSIRHNV-----SDSNLV--- 327
Query: 300 DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV-DATTEASDGSDNFSDIDDFEVDG 358
TA+ D K GV D +++A D SD FSDIDD EVD
Sbjct: 328 --------------------TATGHLANDFDKLHGVGDMSSKAFDESDGFSDIDDAEVDS 367
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
YLHNEEEK YKKIIWEEMNREYL+EQAAKEAAAA K A E ++KNCPE LQAA++L AA
Sbjct: 368 YLHNEEEKRYKKIIWEEMNREYLQEQAAKEAAAATLKKAWEENFKNCPEDLQAAKKLDAA 427
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVC 478
A +AKS+KE QQKRA+EA+N PA++A EA RMLTKKRL SKINYDVLEKLF+DSVC
Sbjct: 428 VKADLAKSKKETQQKRASEARNLAPAKSAAEAVHRMLTKKRLGSKINYDVLEKLFEDSVC 487
>gi|255569418|ref|XP_002525676.1| transcription initiation factor brf1, putative [Ricinus communis]
gi|223534976|gb|EEF36659.1| transcription initiation factor brf1, putative [Ricinus communis]
Length = 625
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 285/486 (58%), Positives = 357/486 (73%), Gaps = 21/486 (4%)
Query: 2 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 61
+KA+DDM +KN L++GE+ IV A +Y IAV RNFTKGRRTEQVQA+CLY+ACR+
Sbjct: 71 DKAYDDMIYIKNGLDMGENLAIVDQAMMYYRIAVERNFTKGRRTEQVQAACLYIACRENR 130
Query: 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 121
KP+LLIDFSN+L IN+Y LGAV+LQLC+VL + + S K +DPSIF+HK+T L G N
Sbjct: 131 KPYLLIDFSNFLRINIYVLGAVFLQLCKVLNLTEHSICQKLLDPSIFIHKYTASLSGGKN 190
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
K + D+A I+ASM RDW+ TGR+PSGL GAALY++AL+HGL S+ DI+K+VH+C+ATL
Sbjct: 191 KDISDSALTIIASMNRDWMQTGRRPSGLWGAALYIAALSHGLTCSRKDILKLVHVCDATL 250
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK-PF 240
KRL+EFENT+SGSLTIE+ A+ +EL E + + N K S E+LC+HK T + P+
Sbjct: 251 SKRLVEFENTESGSLTIEEINAKAEELRES-STDQSNFVLKGSSSKELLCQHKGTSRIPY 309
Query: 241 ACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSS-----------FER 289
A GLC+ CYE F+ G +GG+DPPAFQ AER R SA N++ FE+
Sbjct: 310 AYGLCKGCYEYFI----GFDGGSDPPAFQQAERRRKENLSAMNNNNDSNSVSTMPFLFEK 365
Query: 290 ESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFS 349
E +S R +++ S + ES G +++G G D +++A D SDNFS
Sbjct: 366 ELNSQHADRDEQLLSKKAESTG---EAALHLPADDG-GYSKLHDDDDMSSKALDESDNFS 421
Query: 350 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
DIDD EVDGYLHNEEE +KKIIWEEMNREYLEEQAAKEA AAAAK A EA +K+CPE +
Sbjct: 422 DIDDAEVDGYLHNEEEAQFKKIIWEEMNREYLEEQAAKEAVAAAAKEAWEAKFKDCPEEM 481
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 469
QAA+EL AA AAA+AKS+KEKQQKRAAEAKNS PAQ+A EA R+MLTKKRLSSKINYDVL
Sbjct: 482 QAARELEAAVAAALAKSKKEKQQKRAAEAKNSVPAQSASEAARQMLTKKRLSSKINYDVL 541
Query: 470 EKLFDD 475
EKLFD+
Sbjct: 542 EKLFDE 547
>gi|297829466|ref|XP_002882615.1| RNA polymerase II transcription factor [Arabidopsis lyrata subsp.
lyrata]
gi|297328455|gb|EFH58874.1| RNA polymerase II transcription factor [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 270/484 (55%), Positives = 332/484 (68%), Gaps = 42/484 (8%)
Query: 4 AFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A D+ +++AL IG E +++ +A F+ AV +NFTKGRRTE VQASCLYL CR+ +
Sbjct: 74 ARDEFTNLRDALGIGDERADVIDMAVLFFKSAVEQNFTKGRRTELVQASCLYLTCRELNV 133
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 121
PFLLIDFS+YL ++VYELG+VYLQLC++LYIAD N K VDPSIF+ +F++ LL G N
Sbjct: 134 PFLLIDFSSYLRVSVYELGSVYLQLCEMLYIADNQNYEKLVDPSIFIDRFSNILLKGTHN 193
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
K V TA I+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SKSDIV IVHICEATL
Sbjct: 194 KAVVKTAIAIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKSDIVNIVHICEATL 253
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
KRLIEF NT+SG+L +++ R E H+ + P S VLC H+D+ KPF
Sbjct: 254 TKRLIEFGNTESGNLNVDEITER--ESHKRSSTMKP-----TSNKEAVLCMHQDS-KPFG 305
Query: 242 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERE----SDS 293
GLC+ CYE+F+ +S GL GG+DPPAFQ AE ERM KA+ EEN SS + SD
Sbjct: 306 YGLCKDCYEDFINVSGGLVGGSDPPAFQRAENERMEKAAREENEGGISSLNHDEQLYSDY 365
Query: 294 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 353
MS+ +K+ S + E + +G+ +H T SD SDNFSDI D
Sbjct: 366 CSMSKSEKLFSEKGER------------NKDGDEEHADT---------SDESDNFSDISD 404
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
EVDGY++NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE A+
Sbjct: 405 DEVDGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED---AR 461
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
+ AA A AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLS INYDVLE+LF
Sbjct: 462 KAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAMEAVRRTLEKKRLSLVINYDVLEELF 521
Query: 474 DDSV 477
D S
Sbjct: 522 DTST 525
>gi|145338292|ref|NP_187547.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|110741698|dbj|BAE98795.1| putative transcription factor [Arabidopsis thaliana]
gi|332641235|gb|AEE74756.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 604
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/475 (55%), Positives = 331/475 (69%), Gaps = 26/475 (5%)
Query: 4 AFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A D++ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQASCLYL CR+ +
Sbjct: 74 ARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQASCLYLTCRELNI 133
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GN 121
LLIDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+ +F++ LL G N
Sbjct: 134 ALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFMDRFSNSLLKGKNN 193
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
K V TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+DIV IVHICEATL
Sbjct: 194 KDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATL 253
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
KRLIEF +TDSG+L + + R++E H+ P S VLC H+D+ KPF
Sbjct: 254 TKRLIEFGDTDSGNLNVNEL--RERESHKRSFTMKP-----TSNKEAVLCMHQDS-KPFG 305
Query: 242 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDK 301
GLC CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN E ++ ++
Sbjct: 306 YGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREEN-----EGGISSLNHDEQ 360
Query: 302 VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 361
+ S K C S +GE D G + + SD SDNFSDI D EV+GY++
Sbjct: 361 LYSDYCSMSKRGKQC-----SEKGEKDK---DGAEEHADTSDESDNFSDISDDEVNGYIN 412
Query: 362 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 421
NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE A++ AA A
Sbjct: 413 NEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED---ARKAFEAAKA 469
Query: 422 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLSS INYDVLE LFD S
Sbjct: 470 DAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDTS 524
>gi|6478939|gb|AAF14044.1|AC011436_28 putative transcription factor [Arabidopsis thaliana]
Length = 600
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 260/475 (54%), Positives = 330/475 (69%), Gaps = 30/475 (6%)
Query: 4 AFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A D++ +K+AL IG E D+++ +A +F+ +AV +NFTKGRRTE VQASCLYL CR+ +
Sbjct: 74 ARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQASCLYLTCRELNI 133
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GN 121
LLIDFS+YL ++VYELG+VYLQLC++LY+ + N K VDPSIF+ +F++ LL G N
Sbjct: 134 ALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFMDRFSNSLLKGKNN 193
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
K V TARDI+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SK+DIV IVHICEATL
Sbjct: 194 KDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATL 253
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
KRLIEF +TDSG+L + + R++E H+ P S VLC H+D+ KPF
Sbjct: 254 TKRLIEFGDTDSGNLNVNEL--RERESHKRSFTMKP-----TSNKEAVLCMHQDS-KPFG 305
Query: 242 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDK 301
GLC CY++F+ +S GL GG++PPAFQ AE+ERM KA+ EEN +S ++
Sbjct: 306 YGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREENEG--------GISSLN- 356
Query: 302 VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 361
+ + + C + +GE D G + + SD SDNFSDI D EV+GY++
Sbjct: 357 -HDEQLYHLRIYLGCVAE----KGEKD---KDGAEEHADTSDESDNFSDISDDEVNGYIN 408
Query: 362 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 421
NEEE HYK I W EMN++YLEEQAAKEAA AA AL+AS NCPE A++ AA A
Sbjct: 409 NEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPED---ARKAFEAAKA 465
Query: 422 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
AKSRKEKQQK+A EAKN+ P TA+EA RR L KKRLSS INYDVLE LFD S
Sbjct: 466 DAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDTS 520
>gi|297829468|ref|XP_002882616.1| hypothetical protein ARALYDRAFT_317739 [Arabidopsis lyrata subsp.
lyrata]
gi|297328456|gb|EFH58875.1| hypothetical protein ARALYDRAFT_317739 [Arabidopsis lyrata subsp.
lyrata]
Length = 1245
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/501 (53%), Positives = 328/501 (65%), Gaps = 48/501 (9%)
Query: 4 AFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A D+ +++AL IG E +++ +A F+ AV +NFTKGRRTE VQASCLYL CR+ +
Sbjct: 74 ARDEFTNLRDALGIGDERADVIDMAVLFFKSAVEQNFTKGRRTELVQASCLYLTCRELNV 133
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N 121
PFLLIDFS+YL ++VYELG+VYLQLC++LYIAD N K VDPSIF+ +F++ LL G N
Sbjct: 134 PFLLIDFSSYLRVSVYELGSVYLQLCEMLYIADNQNYEKLVDPSIFIDRFSNILLKGTHN 193
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
K V TA I+ASMKRDWI TGRKPSG+CGAALY +AL+HG+K SKSDIV IVHICEATL
Sbjct: 194 KAVVKTAIAIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKSDIVNIVHICEATL 253
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
KRLIEF NT+SG+L +++ R E H+ + P S VLC H+D+ KPF
Sbjct: 254 TKRLIEFGNTESGNLNVDEITER--ESHKRSSTMKP-----TSNKEAVLCMHQDS-KPFG 305
Query: 242 CGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERESDSPFMS 297
GLC+ CYE+F+ +S GL GG+DPPAFQ AE ERM KA+ EEN SS D
Sbjct: 306 YGLCKDCYEDFINVSGGLVGGSDPPAFQRAENERMEKAAREENEGGISSLNH--DEQLYD 363
Query: 298 RVDKVQSPEP----------------------ESIGVPKNCTTQTASNEGEGDHTKTPGV 335
+ K+ E E + + C + +GD
Sbjct: 364 LILKISCAELLTVRLLQYEQKRKTIFCSSLSFERLRIYLCCVAEKGERNKDGD------- 416
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
+ + SD SDNFSDI D EVDGY++NEEE HYK I W EMN++YLEEQAAKEAA AA
Sbjct: 417 EEHADTSDESDNFSDISDDEVDGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAAS 476
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
AL+AS NCPE A++ AA A AKSRKEKQQK+A EAKN+ P TA+EA RR L
Sbjct: 477 EALKASNSNCPED---ARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAMEAVRRTL 533
Query: 456 TKKRLSSKINYDVLEKLFDDS 476
KKRLS INYDVLE+LFD S
Sbjct: 534 EKKRLSLVINYDVLEELFDTS 554
>gi|115463095|ref|NP_001055147.1| Os05g0305100 [Oryza sativa Japonica Group]
gi|113578698|dbj|BAF17061.1| Os05g0305100 [Oryza sativa Japonica Group]
gi|222631042|gb|EEE63174.1| hypothetical protein OsJ_17983 [Oryza sativa Japonica Group]
Length = 574
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 235/480 (48%), Positives = 319/480 (66%), Gaps = 37/480 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ K +++RQ+ ++L++ D I+ +A R+Y +AV +NFT+GRRT V A+CLY+ACRQ
Sbjct: 71 INKGREEIRQIVSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAAACLYIACRQS 130
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ + K +DPS+F+H+FT+RLL
Sbjct: 131 KKAYLLIDFSDHLQISVYVLGAVFLQLCQVLLLAEHPVIQKLIDPSLFIHRFTERLLGKR 190
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEAT
Sbjct: 191 DNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGYDYTKADIVAVVHVCEAT 250
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPF 240
L KRLIEFENTDSGSLTIE+F+A+ E V P +G EVLCKHKD + F
Sbjct: 251 LTKRLIEFENTDSGSLTIEEFLAKADE-QVLVTKISPKSG-------EVLCKHKDKAEHF 302
Query: 241 ACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERES--DSPFMSR 298
A GLC CY +FM +S GLEGG+DPPAFQ AE++R+ A + ++ +E+ +S +R
Sbjct: 303 AHGLCEKCYNKFMKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEAALESVCEAR 362
Query: 299 VDKVQ---SPEPESIGVPKNCTTQTASNEGEGDHTKTP-GVDATTEASDGSDNFSDIDDF 354
V+ + P++I K+ T + G+ T+ P G +A +G ++ SDIDD
Sbjct: 363 ESDVENNITTPPKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDKADEGPESLSDIDDA 422
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 414
EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAK A AA
Sbjct: 423 EVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKAALAA---------------------- 460
Query: 415 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
AA V + K K+++ + KN+ PAQT EAT+ ML +KRL SKIN + + KL++
Sbjct: 461 -ELAARGVVVEEGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSKINDEAVNKLYN 519
>gi|359481012|ref|XP_002269372.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Vitis
vinifera]
Length = 529
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 253/436 (58%), Positives = 317/436 (72%), Gaps = 13/436 (2%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ A+ ++ + NA+ + D I+ A FY IA+ RNFT+GRR EQV A+CLY+ACR+
Sbjct: 71 LNDAYAEIGHIANAIGVSGGDSIIRPALAFYTIALERNFTRGRRKEQVAAACLYIACREN 130
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
KPFLLIDFS +L INVY LGAV+LQLC++L + + V K VDPS+F+H+F L
Sbjct: 131 KKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFIHRFAAGLPGET 190
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
N V TA I+ASMKRDW+ TGRKPSGLCGAALY+SAL++GLK SK+DIVKIVHICEAT
Sbjct: 191 NMGVSKTALRIIASMKRDWLQTGRKPSGLCGAALYISALSYGLKCSKTDIVKIVHICEAT 250
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNN-GPKVSGMNEVLCKHKDTGK- 238
L KRLIEFENT+SGSLTIE+F + +EL + ++ +N G V G E+LC+HK +GK
Sbjct: 251 LTKRLIEFENTESGSLTIEEFNMKAEELEKEYSSTKQSNIGSTVPGKGELLCEHKGSGKP 310
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS-----SFERESDS 293
PFA GLC CY EF+ +S GLEGG++PPAFQ AER+RM KA+AEEN+ ++ S S
Sbjct: 311 PFAHGLCEICYGEFIKLSGGLEGGSEPPAFQRAERDRMAKAAAEENADSNQIQLDKGSSS 370
Query: 294 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV-DATTEASDGSDNFSDID 352
P + + + EP+SIG + + AS + EG + G D A D S++ SDID
Sbjct: 371 PDVCGNESSKLAEPKSIGA----SDKQASID-EGAPSDLHGADDENANAGDESESLSDID 425
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D EVDGYLHNE+EK +KKIIWE MN+EYLEEQAAKEAAAAAAK A EAS+K+ PEGL+AA
Sbjct: 426 DVEVDGYLHNEKEKQFKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASFKDNPEGLKAA 485
Query: 413 QELAAAAAAAVAKSRK 428
QELAAA AAAVAKSRK
Sbjct: 486 QELAAATAAAVAKSRK 501
>gi|242088663|ref|XP_002440164.1| hypothetical protein SORBIDRAFT_09g027090 [Sorghum bicolor]
gi|241945449|gb|EES18594.1| hypothetical protein SORBIDRAFT_09g027090 [Sorghum bicolor]
Length = 579
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 245/483 (50%), Positives = 314/483 (65%), Gaps = 41/483 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K D++RQ+ N LN+ + IV A RFY +AV RNFT+GRRT V A+CLY+ACRQ
Sbjct: 72 LDKGKDEIRQIVNNLNVSGGETIVSKAYRFYELAVDRNFTRGRRTTHVAAACLYIACRQT 131
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
K +LLIDFS+YL I+VY LGAV+LQLCQVL +AD V K VDPS+F+H+FT RLL
Sbjct: 132 KKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLADHPVVQKLVDPSLFIHRFTHRLLGKR 191
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEAT
Sbjct: 192 DNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGKNYTKADIVSVVHVCEAT 251
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG--K 238
L KRLIEFENTDSGSLTIE+F+A E +E +P + PK SG E+LCKHK+ +
Sbjct: 252 LTKRLIEFENTDSGSLTIEEFLATADEYNE---EPVPKHSPK-SG--EILCKHKNKKGFE 305
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 298
FA GLC CY +F +S GLEGGADPPAFQ AE++R+ A E ++ +E +
Sbjct: 306 HFAHGLCEKCYNKFTKLSGGLEGGADPPAFQRAEKKRLEAAKRAEEAATVKE--AALEES 363
Query: 299 VDKVQSPEPESIGVP-KNCTTQTASNEGEGD--HTKTPGVDA-----TTEASDGSDNFSD 350
+ Q+ E ES P K + +S G G+ + P D E + S++ SD
Sbjct: 364 LCNTQNSEVESTITPRKGLSGHKSSTVGSGELINDSVPPKDPEEGGENCEGNADSESLSD 423
Query: 351 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQ 410
IDD EVD YLHNEEEK YKKIIWEEMN+EYLEEQAAKEA AA
Sbjct: 424 IDDAEVDWYLHNEEEKQYKKIIWEEMNKEYLEEQAAKEALAA------------------ 465
Query: 411 AAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLE 470
AA V + K+K+++R + K+S PA+T EAT ML +K L SKIN +
Sbjct: 466 -----ELAARGIVVEEGKKKKRRRNEDTKSSTPAETPAEATYNMLKRKGLGSKINEGAVG 520
Query: 471 KLF 473
+L+
Sbjct: 521 ELY 523
>gi|357160321|ref|XP_003578728.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like
[Brachypodium distachyon]
Length = 580
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 242/484 (50%), Positives = 313/484 (64%), Gaps = 43/484 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ K D++ Q+ +L++G D I+ +A +FY +AV NFT+GRRT QV A+CLY+ACRQ
Sbjct: 72 LMKGRDEIWQIVTSLHVGGGDTIIDMAHKFYTLAVDHNFTRGRRTTQVAAACLYIACRQS 131
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
K +LLIDFS+YL I+VY LGAV+LQLCQVL +A+ V K +DPS+F+H+FT+RLL
Sbjct: 132 KKAYLLIDFSDYLKISVYVLGAVFLQLCQVLLLAEHPIVQKLIDPSLFIHRFTERLLGKR 191
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++KSDIV +VHICEAT
Sbjct: 192 DNAVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGYNYTKSDIVGVVHICEAT 251
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGP-KVSGMNEVLCKHKDTG-K 238
L KRLIEFENTDSGSLTIEDF+A+ E P + P + SG EVLCKHKD +
Sbjct: 252 LTKRLIEFENTDSGSLTIEDFLAKADE-------EQPVSKPSRKSG--EVLCKHKDKDTE 302
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFER-----ESDS 293
FA GLC CY +F+ +S GLEGGADPPAFQ AER+R+ A E ++ + ES+
Sbjct: 303 HFAHGLCEKCYNKFIKMSGGLEGGADPPAFQRAERQRLEAAKKSEEAAALKEAALGESNC 362
Query: 294 PFMSR--VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS-DNFSD 350
+ D + S + IG K+ T + N + +K P V D ++FSD
Sbjct: 363 EIQNSDVEDNIISLKKGPIG-DKSSTIPSEQNANDNIASKDPEVGGENSKPDADPESFSD 421
Query: 351 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQ 410
IDD EVDGYLHNEEE HYKKIIWEEMN+EY+EEQAAKEA AA
Sbjct: 422 IDDVEVDGYLHNEEETHYKKIIWEEMNKEYIEEQAAKEALAA------------------ 463
Query: 411 AAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLE 470
AA ++K+++R + KN PA+T EAT ML +K L SKIN + +
Sbjct: 464 -----ELAARGVGVGGGQQKKRRRNEDTKNLSPAETPAEATYNMLKRKGLGSKINVEAVG 518
Query: 471 KLFD 474
L++
Sbjct: 519 GLYN 522
>gi|297842649|ref|XP_002889206.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
gi|297335047|gb|EFH65465.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
Length = 574
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 233/483 (48%), Positives = 309/483 (63%), Gaps = 49/483 (10%)
Query: 4 AFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A D++R +K+AL IG E D+++ +A F+ +A +NFTKGRRTE VQ+SCLYL CR+K
Sbjct: 74 ARDELRNLKDALGIGDERDDVIVMAAEFFEMATDQNFTKGRRTELVQSSCLYLTCREKKI 133
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
PFLLIDFS+YL ++VYELG+VYLQLC++LY+ N + VDPSIF+ +F + LL G +
Sbjct: 134 PFLLIDFSSYLRVSVYELGSVYLQLCEMLYLVQNENYEELVDPSIFIPRFMNNLLKGAHN 193
Query: 123 -------KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
KV TA +I++SMKRDW+ TGRKPSG+CGAA+Y++AL+HG+ S++DI KIVH
Sbjct: 194 ITKNVWDKVFGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALSHGIMCSRADIAKIVH 253
Query: 176 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD 235
+CEAT+ KRL EF NT +GSLT+++ + + PN+ V V C+HKD
Sbjct: 254 MCEATITKRLNEFANTKAGSLTVDELDKSEPISRKEAFTPRPNSDEGV-----VNCQHKD 308
Query: 236 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 295
K F GLC+SC+++F+ IS G+ GG+DPPAFQ AE+ERM KA+ EEN +
Sbjct: 309 L-KRFGYGLCKSCHDDFIKISGGIVGGSDPPAFQRAEKERMEKAAREENEGGVGSDEQVN 367
Query: 296 MSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDN--FSDIDD 353
+S+ +K Q PE +G+G+ G + E SD ++ SD DD
Sbjct: 368 VSKGEK-QCPE-----------------KGQGEKY---GGEEHAEYSDDDESGICSDDDD 406
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
EVD L E+E K W NREY++EQA KEAA AA NCPE A+
Sbjct: 407 SEVDHILLGEDETLLKTTAWNLQNREYVKEQAEKEAALKAA---------NCPED---AR 454
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
L A+ AAVAKSRKEK+QKRA E KN+ P T +EA RR L +KRL INYDVLE+LF
Sbjct: 455 NLVEASKAAVAKSRKEKRQKRAEEEKNAPPPATTMEAVRRTLERKRLGGLINYDVLEELF 514
Query: 474 DDS 476
D S
Sbjct: 515 DTS 517
>gi|413946304|gb|AFW78953.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 515
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/483 (49%), Positives = 311/483 (64%), Gaps = 43/483 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+ACRQ
Sbjct: 7 LDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYIACRQS 66
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL
Sbjct: 67 KKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLLGRR 126
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
N V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEAT
Sbjct: 127 NNDVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEAT 186
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHKDTG-K 238
L KRLIEFENTDSGSLTIE+F+A E + E V+ + P +G E+LCKHKD G +
Sbjct: 187 LTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------EILCKHKDKGFE 239
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 298
FA GLC CY +F +S GLEGG+DPPAFQ AE++R+ A E ++ +E+
Sbjct: 240 HFAHGLCEKCYNKFTKLSGGLEGGSDPPAFQRAEKKRLEAAKRAEEAAAAKEAAL--EES 297
Query: 299 VDKVQSPEPESIGVPKNCTTQTASNE--GEG---DHTKTPGVDATTEASDGS---DNFSD 350
+ Q+ E ES P+ + S++ EG D + E +G+ ++ SD
Sbjct: 298 LCDTQNSEVESAMTPRKGLSGDKSSKMGSEGLINDSMPPKDPEEGGENCEGNADPESLSD 357
Query: 351 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQ 410
IDD EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 358 IDDAEVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA------------------- 398
Query: 411 AAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLE 470
A AA + +K++KR K+S PA+T EAT ML +K L SKIN ++
Sbjct: 399 -----AELAARGIDPEAGKKKRKRNEGTKSSTPAETPAEATCNMLKRKGLGSKINVGAVD 453
Query: 471 KLF 473
+L+
Sbjct: 454 ELY 456
>gi|226492330|ref|NP_001141990.1| uncharacterized protein LOC100274140 [Zea mays]
gi|194706710|gb|ACF87439.1| unknown [Zea mays]
gi|413946300|gb|AFW78949.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 580
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/483 (49%), Positives = 311/483 (64%), Gaps = 43/483 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+ACRQ
Sbjct: 72 LDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYIACRQS 131
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL
Sbjct: 132 KKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLLGRR 191
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
N V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEAT
Sbjct: 192 NNDVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEAT 251
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHKDTG-K 238
L KRLIEFENTDSGSLTIE+F+A E + E V+ + P +G E+LCKHKD G +
Sbjct: 252 LTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------EILCKHKDKGFE 304
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 298
FA GLC CY +F +S GLEGG+DPPAFQ AE++R+ A E ++ +E+
Sbjct: 305 HFAHGLCEKCYNKFTKLSGGLEGGSDPPAFQRAEKKRLEAAKRAEEAAAAKEAAL--EES 362
Query: 299 VDKVQSPEPESIGVPKNCTTQTASNE--GEG---DHTKTPGVDATTEASDGS---DNFSD 350
+ Q+ E ES P+ + S++ EG D + E +G+ ++ SD
Sbjct: 363 LCDTQNSEVESAMTPRKGLSGDKSSKMGSEGLINDSMPPKDPEEGGENCEGNADPESLSD 422
Query: 351 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQ 410
IDD EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 423 IDDAEVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA------------------- 463
Query: 411 AAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLE 470
A AA + +K++KR K+S PA+T EAT ML +K L SKIN ++
Sbjct: 464 -----AELAARGIDPEAGKKKRKRNEGTKSSTPAETPAEATCNMLKRKGLGSKINVGAVD 518
Query: 471 KLF 473
+L+
Sbjct: 519 ELY 521
>gi|302798535|ref|XP_002981027.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
gi|300151081|gb|EFJ17728.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
Length = 636
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/499 (44%), Positives = 316/499 (63%), Gaps = 44/499 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K ++R + ++L++G D+IV A R Y +AV +NFTKGRRT QV A+CLY+ CRQ
Sbjct: 86 LDKGRQEIRNIASSLSVGGGDDIVGSAHRIYVLAVEKNFTKGRRTSQVAAACLYIVCRQG 145
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL--- 117
+KP+LLIDFS+ L +VY LGAV+LQLC +L + V K VDPS+F+H+FTDRLL
Sbjct: 146 NKPYLLIDFSDCLQTSVYLLGAVFLQLCTLLRLDQHPMVQKPVDPSLFIHRFTDRLLHRI 205
Query: 118 -PGGNKK----VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 172
PG + K + +TA I+ASMK+DWI TGR+PSG+CGAAL +S HGL+ S +D+
Sbjct: 206 APGTSSKNQFAIANTALRIVASMKQDWIQTGRRPSGICGAALLLSTRIHGLECSTADVES 265
Query: 173 IVHICEATLMKRLIEFENTDSGSLTIEDFMA----RKKELHEGVAANLPNNGPKVSGMNE 228
+V++C+AT+ KRL+EF NT++GSLT E+F A R+KE+ ++ NNG + E
Sbjct: 266 VVYVCKATITKRLVEFSNTEAGSLTPEEFEAKAKQREKEMLSVSQTDIVNNGV----IKE 321
Query: 229 VLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA--ERERMVK------- 278
+LC+HKD+G + +A GLC++CY++F+ IS GL+GG+ PPAFQ A ERER++K
Sbjct: 322 ILCEHKDSGAQHYAHGLCKNCYDDFVKISGGLQGGSAPPAFQRAQKERERLLKNKKRKLT 381
Query: 279 --ASAEENSSFERESDSPFMSR-VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV 335
A ++E+ + SP + + K E S + T ++E + + V
Sbjct: 382 AEAISDEDEDLTCTNSSPVAEKAIKKKLEQEEHSYFDADDVTESCVTHETKAEKRYEDSV 441
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
D D ++ SDIDD E+ YL+ E+E K I+W EMN+EY++EQ AKEAA A
Sbjct: 442 D------DEPESLSDIDDVELTTYLNTEDEIRLKTIVWTEMNKEYIQEQEAKEAALKAQA 495
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
++ A + + A AAA V SRK ++ K A N PA++A EATR+ML
Sbjct: 496 ESMAA--------VSTSGTAAEIAAATVVMSRKARKHKHGDTA-NCKPAESAAEATRQML 546
Query: 456 TKKRLSSKINYDVLEKLFD 474
KKRLSSK+NY VLEK+F+
Sbjct: 547 EKKRLSSKLNYSVLEKMFN 565
>gi|356560345|ref|XP_003548453.1| PREDICTED: uncharacterized protein LOC100817609 [Glycine max]
Length = 604
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 244/488 (50%), Positives = 323/488 (66%), Gaps = 49/488 (10%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQVQASCLYLAC 57
+++A+D+++ + + +G +DE H+A++ FY IA+ RNFT+GR++EQV A+CLY+A
Sbjct: 71 LDRAYDEIKYL--SFGLGVNDE--HMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAF 126
Query: 58 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 117
R Y LGAV+LQLCQVL + + V K VDPS+F+H++T LL
Sbjct: 127 R-------------------YVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLL 167
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
G+K V DTA I+ASMKRDW+ TGRKPSGLCGAALY+SAL HG+K SK DI+KIVH+C
Sbjct: 168 KRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVC 227
Query: 178 EATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHK-DT 236
EATL KRL+EFE+T+S SLT+E+ KE HE +P G K ++LC+HK D+
Sbjct: 228 EATLTKRLVEFEDTESSSLTVEELNTMAKE-HEKNPTIMPEGGLKGCISKDLLCEHKEDS 286
Query: 237 G-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA----SAEENSSFERES 291
G FA GLC +CY++F +S GL GG DPPAFQ AERER+ K S +E + S
Sbjct: 287 GVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERLKKTLPEESVDEACALANAS 346
Query: 292 DSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI 351
+ F S + + + PESIG A+ +G+ D + D S+ SDI
Sbjct: 347 NDQFKSHKEDLPAYVPESIGAN---VEHEATKDGKYD---------DSHREDESETLSDI 394
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 411
DD EVD Y+H+EE KH KKI+WE NREYLEEQAAKEAAAAA K A EA ++NC E + A
Sbjct: 395 DDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAANKKAFEAKFENCSEDILA 454
Query: 412 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR----LSSKINYD 467
A+ELAA++ AVAKSRKE +QKRA EAKN+ PAQ+A EA +M KKR L SK+N++
Sbjct: 455 ARELAASSIEAVAKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFE 514
Query: 468 VLEKLFDD 475
+L +LFD+
Sbjct: 515 LLNELFDE 522
>gi|356570349|ref|XP_003553352.1| PREDICTED: uncharacterized protein LOC100789154 [Glycine max]
Length = 639
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 243/488 (49%), Positives = 323/488 (66%), Gaps = 51/488 (10%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKR---FYGIAVARNFTKGRRTEQVQASCLYLAC 57
+++A+D+++ + + +G +DE H+A++ FY IA+ RNFT+GR++EQV A+CLY+A
Sbjct: 111 LDRAYDEIKYL--SFGLGVNDE--HMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAF 166
Query: 58 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 117
R Y LGAV+LQLCQVL + + V K VDPS+F+H++T LL
Sbjct: 167 R-------------------YVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLL 207
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
G+K V DTA I+ASMKRDW+ TGRKPSGLCGAALY+SAL HG+K SK DI+KIVH+C
Sbjct: 208 KRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVC 267
Query: 178 EATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHK-DT 236
EATL KRL+EFE+T+S SLT+E+ KE HE + +P G K ++LC+HK D+
Sbjct: 268 EATLTKRLVEFEDTESSSLTVEELNTMAKE-HEKNSMIMPGGGLKGCISKDLLCEHKEDS 326
Query: 237 G-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA----SAEENSSFERES 291
G FA GLC +CY++F +S GL GG DPPAFQ AERER K S +E + S
Sbjct: 327 GVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERFKKTLPEESVDEACALANAS 386
Query: 292 DSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI 351
+ F S + + + PE V A+ +G+ D + D S+ SDI
Sbjct: 387 NDQFKSHKEDLHAYVPERANV-----EHEATKDGKYD---------DSHREDESETLSDI 432
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 411
DD EVD Y+H+EE KH KK++WE NREYLEEQAAKEAAAAA K A EA+++NC E L A
Sbjct: 433 DDEEVDLYIHDEEGKHIKKLLWETANREYLEEQAAKEAAAAANKKAFEANFENCSEDLLA 492
Query: 412 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR----LSSKINYD 467
A+ELAA++A AVAKSRKE +QKRA EAKN+ PAQ+A EA +M KKR L SK+N++
Sbjct: 493 ARELAASSAEAVAKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFE 552
Query: 468 VLEKLFDD 475
+L +LFD+
Sbjct: 553 LLNELFDE 560
>gi|413948296|gb|AFW80945.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
gi|413948297|gb|AFW80946.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
Length = 588
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 237/491 (48%), Positives = 307/491 (62%), Gaps = 50/491 (10%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K D++RQ+ N L++ + +V A RFY +AV RNFT+GRRT V A+CLY+ACRQ
Sbjct: 72 LDKGRDEIRQIVNNLHVSGGETVVSKAYRFYELAVDRNFTRGRRTSHVAAACLYIACRQS 131
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL--- 117
K +LLIDFS+YL I+VY LGAV+LQLCQVL +AD V K VDPS+F+H+FT LL
Sbjct: 132 KKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLADHPVVQKLVDPSLFIHRFTKCLLGRR 191
Query: 118 ------PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIV 171
+++V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV
Sbjct: 192 DNAVSDTAFSREVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIV 251
Query: 172 KIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLC 231
+VH+CEATL KRLIEFENTDSGSLTIE+F+A E +E A++ PK SG E+LC
Sbjct: 252 SVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADEYNE---ASVSKYSPK-SG--EILC 305
Query: 232 KHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE 290
KHK + FA GLC C+ +F +S GLEGGA+PPAFQ AE +R+ A E ++ +E
Sbjct: 306 KHKGKDFEHFAHGLCEKCFNKFTKLSGGLEGGANPPAFQRAENKRLEAAKRAEEAAAVKE 365
Query: 291 SDSPFMSRVDKVQSPEPESIGVPKNCTT-QTASNEGEGD--HTKTPGVDA-----TTEAS 342
+ + Q+ E ES PK + +S G G + P D E +
Sbjct: 366 AAL--EESLCDTQNSEIESTTTPKKALSGDKSSTIGSGGLINDSVPPKDPEEGGENCEGN 423
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
++ SDIDD EVD YLHNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 424 ADPESLSDIDDVEVDWYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALA----------- 472
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 462
A AA + +K++KR + K+S PA T EAT ML +K L S
Sbjct: 473 -------------AELAARGIVVEEGKKKRKRNEDTKSSTPADTPAEATYNMLKRKGLGS 519
Query: 463 KINYDVLEKLF 473
KIN + +L+
Sbjct: 520 KINEGAVGELY 530
>gi|148909769|gb|ABR17974.1| unknown [Picea sitchensis]
Length = 746
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 255/554 (46%), Positives = 345/554 (62%), Gaps = 80/554 (14%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+EK +++ + +L++ ++ V+ R Y IAV RNFT+GRRT+QV A+CLY+ CRQ+
Sbjct: 87 LEKGREEIEIIAESLSVSGREDSVNAGHRLYIIAVERNFTRGRRTKQVAAACLYIVCRQE 146
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
KPFLLIDFS+ L INVY LGAV+LQLC++L + + K VDPS+F+H+F DRL+
Sbjct: 147 QKPFLLIDFSDVLQINVYVLGAVFLQLCKLLRLEQHPIIQKPVDPSLFIHRFADRLVGRA 206
Query: 121 NKK-----VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
+ + +TA ILASMKRDW+ TGRKPSG+CGAALY+SAL+HG +K+D+V IVH
Sbjct: 207 TTRKQFHSIANTALRILASMKRDWMQTGRKPSGVCGAALYISALSHGFGCTKADVVSIVH 266
Query: 176 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGV------AANLPNNGPKVSGMNEV 229
ICE TL KRLIEFENTDSGSLTIE+F ++ KEL + A N G + G+ ++
Sbjct: 267 ICEGTLTKRLIEFENTDSGSLTIEEFESKAKELEAEMQTIKVPAINAETKG--IKGITDL 324
Query: 230 LCKHKDTGKP-FACGLCRSCYEEFMTISEGLEGGADPPA--------------------- 267
LC+HKDTG FA GLC SCYEEF+ +S G++GG+ PPA
Sbjct: 325 LCEHKDTGSAHFAHGLCHSCYEEFVKLSGGIQGGSAPPAFQRAEKQRKEDALHKKQDKLL 384
Query: 268 ----------FQVA-------------ERERMV--KASAEENSSFERESDSPFMSRVDKV 302
+Q+ E+E+ + KA + N + + ++ +R + +
Sbjct: 385 FFDEEDEEDQYQIGTQKCFEDTARMETEKEKQLNQKAVQDGNPGSQEQENAEGSNRYENI 444
Query: 303 Q--------------SPEPES-IGVPKNCTTQTASN-EGEGD---HTKTPGVDATTEASD 343
+ SP +S IG +C ++ + E D T+T ++ + D
Sbjct: 445 KNLYRSTASKDGYADSPNGDSQIGAVGSCLSEAVNGYRAEIDDWTQTQTQSINKVEDEMD 504
Query: 344 GS-DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
+ SDIDD EV+ YLHN+EE K +IW EMN+EYLEEQAAKE A AAA+AA A+
Sbjct: 505 EEIETLSDIDDEEVERYLHNKEEVRLKTLIWTEMNKEYLEEQAAKEEAIAAAEAAHAAAL 564
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 462
EG A ELAAAAAAAVAK +K+KQ+KRA E+KN PAQ+A EATR+MLTKK+LSS
Sbjct: 565 AAAAEGAPDAVELAAAAAAAVAKLKKDKQRKRAEESKNKVPAQSAAEATRQMLTKKKLSS 624
Query: 463 KINYDVLEKLFDDS 476
K+NYDVLEKLF+D+
Sbjct: 625 KVNYDVLEKLFEDN 638
>gi|357508865|ref|XP_003624721.1| Transcription factor IIIB 90 kDa subunit [Medicago truncatula]
gi|355499736|gb|AES80939.1| Transcription factor IIIB 90 kDa subunit [Medicago truncatula]
Length = 608
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 236/509 (46%), Positives = 313/509 (61%), Gaps = 65/509 (12%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +M + +L + E D +V A+ FY IA+A+NFT+GR++EQV+A+CLYLA RQ
Sbjct: 70 LYRASKEMEYLSLSLGVSEGD-VVRQARAFYEIALAKNFTRGRKSEQVRAACLYLAFRQN 128
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
KP+ LI+FSN L INVYELG VYLQLC+VL + + V K +DPS++LHK+T LL
Sbjct: 129 KKPYFLIEFSNNLRINVYELGGVYLQLCEVLRLDNHPIVKKPIDPSLYLHKYTSNLLGHR 188
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI---------- 170
N V TA +I+A M RDW+ TGRKP GL AALY SA HG K SK DI
Sbjct: 189 NGVVSATALNIIAQMNRDWLQTGRKPGGLFAAALYTSANAHGHKVSKRDIGLILLVSSRA 248
Query: 171 -----------------------VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKE 207
+++ HICE T+ KRLIE+E TDS +LT+E+ A KE
Sbjct: 249 LSHSVPHRLSSQTSAAIPSPVILLRLFHICEQTMNKRLIEYEMTDSSNLTVEELNAMAKE 308
Query: 208 LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP-FACGLCRSCYEEFMTISEGLEGGADPP 266
+E +PN+ S ++C+HK+ P FA GLC +CY++F +S G GG DPP
Sbjct: 309 -NEKNPVVMPNSKFNGSTSTPLVCEHKEMEVPHFALGLCETCYKDFDKVSGGFGGGLDPP 367
Query: 267 AFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGE 326
AFQ AE+ER+ K +++EN+ + S+S + + P S+ E
Sbjct: 368 AFQRAEQERVKKTNSKENADVVKASNSACKGQKEDF----PASVL--------------E 409
Query: 327 GDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAA 386
D D +TEA D S NFSDIDD EVD +L NEEEK Y+KIIWE NREYLEEQAA
Sbjct: 410 RD-------DTSTEAQDESGNFSDIDDQEVDAFLFNEEEKSYRKIIWENQNREYLEEQAA 462
Query: 387 KEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQT 446
KEAAAAA K EA+ +NCP ++EL + A+VAK+RKEK Q+RA +AK SGPAQ+
Sbjct: 463 KEAAAAAQKKIYEANLENCP---VESRELYESTTASVAKTRKEK-QRRAQQAKKSGPAQS 518
Query: 447 ALEATRRMLTKKRLSSKINYDVLEKLFDD 475
A+EA +M+ +K LS+K+N D KLF+D
Sbjct: 519 AVEAACQMVKRKGLSNKVNMDNFAKLFED 547
>gi|297814368|ref|XP_002875067.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
gi|297320905|gb|EFH51326.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
Length = 532
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 222/482 (46%), Positives = 287/482 (59%), Gaps = 93/482 (19%)
Query: 4 AFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A D+ R +K+AL IG E D+++ A RF+ +A +NFTKGRRTE VQ+SCLYL CR+K
Sbjct: 74 ARDEFRNLKDALGIGDERDDVIDTAARFFEMATEQNFTKGRRTELVQSSCLYLTCREKKI 133
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
PFLLIDFS+YL ++VYELG+VYLQLC++ Y+ N + VDPSIF+ +F + LL G +
Sbjct: 134 PFLLIDFSSYLRVSVYELGSVYLQLCEMFYLVQNGNYEELVDPSIFIPQFMNNLLKGAHN 193
Query: 123 -------KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
KV TA +I++SMKRDW+ TGRKPSG+CGAA+Y++AL+HG+ S++DI KIVH
Sbjct: 194 IAKNVLDKVLGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALSHGIMCSRADIAKIVH 253
Query: 176 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD 235
+CEAT+ KRL EF NT++ SLT+++ + L E + PN+ V V CKHKD
Sbjct: 254 MCEATITKRLDEFANTEAASLTVDELDKSENILREKPFSPRPNSDEGV-----VNCKHKD 308
Query: 236 TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 295
K F GLC+SC++ FM IS G+ GG+DPPAFQ AE+ERM KA+ EEN
Sbjct: 309 L-KRFGFGLCKSCHDAFMKISGGVVGGSDPPAFQRAEKERMEKAAREEN----------- 356
Query: 296 MSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPG-VDATTEASDGSDNFSDID-D 353
EG K+ G D EA D S N SD+D D
Sbjct: 357 ------------------------------EGAIEKSEGETDWDAEAPDESGNLSDLDGD 386
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
EVDG NE+EK KI WE NR+YLE LE
Sbjct: 387 AEVDGCFLNEDEKLMTKISWELDNRDYLE-------------VNLE-------------- 419
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
AVAKSRKEK+QKRA EAKN+ P TA+EA RR++ +KRLS IN D L++L
Sbjct: 420 --------AVAKSRKEKRQKRAEEAKNAPPPATAMEAVRRIVKRKRLSG-INCDFLDELL 470
Query: 474 DD 475
D+
Sbjct: 471 DN 472
>gi|145361010|ref|NP_182035.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|330255413|gb|AEC10507.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 557
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 218/480 (45%), Positives = 281/480 (58%), Gaps = 69/480 (14%)
Query: 1 MEKAFDDMRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 59
+ KA D++ +++AL IG+ D+++ +A F+ IA+ NFTKGR E V +SCLYL CRQ
Sbjct: 71 IRKATDELMNLRDALGIGDDRDDVIVMASNFFRIALDHNFTKGRSKELVFSSCLYLTCRQ 130
Query: 60 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 119
LLIDFS+YL ++VY+LG+VYLQLC +LYI + N K VDPSIF+ +F++ LL G
Sbjct: 131 FKLAVLLIDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYEKLVDPSIFIPRFSNMLLKG 190
Query: 120 G-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
N K+ TA I+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K SK+DIV IVHICE
Sbjct: 191 AHNNKLVLTATHIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICE 250
Query: 179 ATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 238
ATL KRLIEF +T++ SLT ++ K E + AA P VLC H+D K
Sbjct: 251 ATLTKRLIEFGDTEAASLTADEL--SKTEREKETAALRSKRKPNFYKEGVVLCMHQDC-K 307
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV-KASAEENSSFERESDSPFMS 297
P GLC SCY+EFMT+S GLEGG+DPPAFQ AE+ERM KAS+EEN
Sbjct: 308 PVDYGLCESCYDEFMTVSGGLEGGSDPPAFQRAEKERMEEKASSEEND------------ 355
Query: 298 RVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVD 357
K +D SD S SD+DD E+D
Sbjct: 356 ---------------------------------KQVNLDG---HSDESSTLSDVDDRELD 379
Query: 358 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 417
Y EE KI ++ N Y E++AAK+AA A A +
Sbjct: 380 CYFRTPEEVRLVKIFFDHENPGYDEKEAAKKAAGLNA--------------CNNASNIFE 425
Query: 418 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 477
A+ AA AKSRKEK+Q+RA E KN+ P T +EA M+ +K+ IN D LE+LFD SV
Sbjct: 426 ASKAAAAKSRKEKRQQRAEEEKNAPPPATGIEAVDSMVKRKKFRD-INCDYLEELFDASV 484
>gi|334184087|ref|NP_178237.3| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|330250334|gb|AEC05428.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 548
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 219/479 (45%), Positives = 302/479 (63%), Gaps = 60/479 (12%)
Query: 3 KAFDDMRQMKNALNIG-ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 61
KA D++R +K+AL IG E D++V +A FY A+ +NFTKGRR E VQ+SCLYLAC
Sbjct: 68 KAIDELRNLKDALGIGDERDDVVDMAAVFYEAAMDQNFTKGRRAELVQSSCLYLAC---- 123
Query: 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 121
+YL ++VYELG+VYLQLC++LY+ N + VDPSIF+ +FT+ LL G +
Sbjct: 124 ---------SYLRVSVYELGSVYLQLCEMLYLVQNKNYEELVDPSIFIPRFTNSLLKGAH 174
Query: 122 ---KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
K V +TA++I++SMKRDWI TGRKPSG+CGAA+Y++AL+HG+ +S++DI K+VH+CE
Sbjct: 175 AKAKDVANTAKNIISSMKRDWIQTGRKPSGICGAAIYMAALSHGIMYSRADIAKVVHMCE 234
Query: 179 ATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 238
AT+ KRL EF NT++GSLT+++ ++ L + PN+ V V CKHKD K
Sbjct: 235 ATITKRLNEFANTEAGSLTVDELDESEEILRKETFTPRPNSDKGV-----VNCKHKDL-K 288
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 298
F GLC+SC+++F+ IS G+ GG+DPPA+Q AE+ERM KA+ EEN +
Sbjct: 289 RFGYGLCKSCHDDFIIISGGVVGGSDPPAYQRAEKERMEKAAREENEG--------GIGN 340
Query: 299 VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG 358
++ E + V K + S +GEG+ T G + E SD SD SD DD EV+
Sbjct: 341 LN-----HDEQVNVSKR--AKKCSEKGEGE---TYGGERHAEYSDESDICSDDDDSEVEH 390
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
L E+E K W N++YLEEQA KEAA AA NCPE A+ L A
Sbjct: 391 VLLGEDETRLKTTAWNLQNKDYLEEQAEKEAALKAA---------NCPED---ARNLVEA 438
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN-YDVLEKLFDDS 476
+ AAVA SRKEK++KRA EAKN+ P+ TA EA+ + ++N + VL++L D S
Sbjct: 439 SKAAVANSRKEKRRKRAEEAKNAPPSATATEASYTE------TQRVNQHHVLDELLDTS 491
>gi|145353293|ref|XP_001420953.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357469|ref|XP_001422941.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581189|gb|ABO99246.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583185|gb|ABP01300.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 576
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 179/470 (38%), Positives = 263/470 (55%), Gaps = 71/470 (15%)
Query: 7 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 66
+++Q+ + L I +++V A R Y +AV RNFT+GRR QV +C+Y+ CRQ+S+P++L
Sbjct: 96 EIKQLADRLGIRPREDVVDAAHRLYKLAVQRNFTRGRRISQVAGACMYIICRQESRPYML 155
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVC 125
IDF++ L NVY LG V+LQLC++L + + K +DPS+F+H+F D+L G V
Sbjct: 156 IDFADILQTNVYVLGGVFLQLCRLLRLEQHPLMQKPIDPSLFIHRFADKLNLGRRMHTVA 215
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+TA ++ASMKRDW+ TGR+P+G+CGAAL+V+A HG SK D+V +VH+ E+TL KRL
Sbjct: 216 NTALRLVASMKRDWMQTGRRPNGICGAALWVAAQIHGFSPSKRDVVAVVHVGESTLKKRL 275
Query: 186 IEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK--PFACG 243
EFENT S +L+IE+F + + AN S M+ + C HKD FA G
Sbjct: 276 SEFENTPSAALSIEEFDTQARTFEAEEEANKNTKSLASSPMSVLSCVHKDNENIPHFAHG 335
Query: 244 LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQ 303
+CR+CY +++ IS G GGADPPAF AE +R + A
Sbjct: 336 MCRACYVDYVRISGGSVGGADPPAFMRAEAKRKIDAK----------------------- 372
Query: 304 SPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNE 363
+ + +P + + + +G K E ++ D SD+DD E+D Y+HNE
Sbjct: 373 ----QKLLLPALSSGELGDEDADGLVAK--------EDNEVIDTLSDVDDDEIDSYIHNE 420
Query: 364 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 423
E + ++++W EMN+EYLE QA KE AA+ A + ++ P+ L
Sbjct: 421 NEVNLRRLVWSEMNKEYLEFQALKEQAASRTSAPTKKKHRKAPDTL-------------- 466
Query: 424 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
PA+T EA R++L KK+ SSKINY+ LE LF
Sbjct: 467 -------------------PAETPAEAARQVLAKKKGSSKINYEALENLF 497
>gi|413946301|gb|AFW78950.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 425
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 163/277 (58%), Positives = 208/277 (75%), Gaps = 9/277 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+ACRQ
Sbjct: 72 LDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYIACRQS 131
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL
Sbjct: 132 KKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLLGRR 191
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
N V DTA I+ASMKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEAT
Sbjct: 192 NNDVSDTALRIVASMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEAT 251
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHKDTG-K 238
L KRLIEFENTDSGSLTIE+F+A E + E V+ + P +G E+LCKHKD G +
Sbjct: 252 LTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHSPKSG-------EILCKHKDKGFE 304
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 275
FA GLC CY +F +S GLEGG+DPPAFQ AE++R
Sbjct: 305 HFAHGLCEKCYNKFTKLSGGLEGGSDPPAFQRAEKKR 341
>gi|218196515|gb|EEC78942.1| hypothetical protein OsI_19387 [Oryza sativa Indica Group]
Length = 521
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 205/480 (42%), Positives = 282/480 (58%), Gaps = 73/480 (15%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ K +++RQ+ ++L++ D I+ +A R+Y +AV +NFT+GRRT V A+CLY+ACRQ
Sbjct: 54 INKGREEIRQIVSSLHVAGGDTIISMAHRYYTLAVDKNFTRGRRTTHVAAACLYIACRQS 113
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
K +LLIDFS++L I +V+ + C I Q+ S F+ +L
Sbjct: 114 KKAYLLIDFSDHLQI------SVFAKFCYSRNI--------QLSKSSSTPAFSYIVLQ-- 157
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEAT
Sbjct: 158 --------------------NTGRKPSGLCGAALYIAALSHGYDYTKADIVAVVHVCEAT 197
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPF 240
L KRLIEFENTDSGSLTIE+F+A+ E V P +G EVLCKHKD + F
Sbjct: 198 LTKRLIEFENTDSGSLTIEEFLAKADE-QVLVTKISPKSG-------EVLCKHKDKAEHF 249
Query: 241 ACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERES--DSPFMSR 298
A GLC CY +FM +S GLEGG+DPPAFQ AE++R+ A + ++ +E+ +S +R
Sbjct: 250 AHGLCEKCYNKFMKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEAALESVCEAR 309
Query: 299 VDKVQ---SPEPESIGVPKNCTTQTASNEGEGDHTKTP-GVDATTEASDGSDNFSDIDDF 354
V+ + P++I K+ T + G+ T+ P G +A +G ++ SDIDD
Sbjct: 310 ESDVENNITTPPKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDKADEGPESLSDIDDA 369
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 414
EVDGYLHNEEE YKKIIWEEMN+EYLEEQAAK A AA
Sbjct: 370 EVDGYLHNEEETQYKKIIWEEMNKEYLEEQAAKAALAA---------------------- 407
Query: 415 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
AA V + K K+++ + KN+ PAQT EAT+ ML +KRL SKIN + + KL++
Sbjct: 408 -ELAARGVVVEEGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSKINDEAVNKLYN 466
>gi|255078514|ref|XP_002502837.1| predicted protein [Micromonas sp. RCC299]
gi|226518103|gb|ACO64095.1| predicted protein [Micromonas sp. RCC299]
Length = 636
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 194/474 (40%), Positives = 271/474 (57%), Gaps = 39/474 (8%)
Query: 7 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 66
++ Q+ + L I ++I + A R Y +AV RNFT+GRRT+QV A+CLY+ CRQ+S+P++L
Sbjct: 53 EISQVADRLGIRPREDIANAAHRLYKLAVQRNFTRGRRTQQVAAACLYIICRQESRPYML 112
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVC 125
IDFS+ + NVY LGAV+LQLC++L + + K +DPS+F+H+F DRL G V
Sbjct: 113 IDFSDVVQTNVYVLGAVFLQLCRLLRLEQHPLISKPIDPSLFIHRFADRLTLGRKMHAVA 172
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+TA ++ASMKRDW+ TGR+PSG+CGAAL+V+AL HG + SK D+V +VH+ EATL KR+
Sbjct: 173 NTALRLVASMKRDWMQTGRRPSGVCGAALWVAALLHGYERSKRDVVAVVHVGEATLRKRV 232
Query: 186 IEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKV---SGMNEVLCKHK--DTGKPF 240
EFENT S L++E+F R K+ +E A L +G + G+ + C HK D F
Sbjct: 233 TEFENTPSAMLSVEEFDIRAKD-YEKEQAALAESGALLGAPGGITALTCIHKDHDGSTHF 291
Query: 241 ACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVD 300
A G+CR CY E+ +S G GG DPPAFQ AE A + +R +P +
Sbjct: 292 AHGMCRQCYLEYARVSGGARGGEDPPAFQAAE--------ARRDREAQRALPAPQATLAL 343
Query: 301 KVQSPEPESIGVPKNCTTQTASNEGEGD-HTKTPGVDATTEASDGSDNFSDIDDFEVDGY 359
+ + K + E E K G D + + FSD+DD E+D Y
Sbjct: 344 PAPAAKKGKKMSAKEAREAMEAIEREARAKAKVKGEDEDEDTDAEPETFSDVDDEEIDNY 403
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 419
+H EE +++IW E+NR+YLE QAAKEAA AAA AL G++
Sbjct: 404 IHTAEEVKLRRVIWSELNRDYLETQAAKEAAVAAAPPAL--------PGIEGDGGKGGKK 455
Query: 420 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
+ PA TA EA ++ML+ K++SSKINYD L LF
Sbjct: 456 RKKYT---------------HQVPADTAAEAAQQMLSSKKISSKINYDALNDLF 494
>gi|302801496|ref|XP_002982504.1| hypothetical protein SELMODRAFT_421928 [Selaginella moellendorffii]
gi|300149603|gb|EFJ16257.1| hypothetical protein SELMODRAFT_421928 [Selaginella moellendorffii]
Length = 588
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 197/499 (39%), Positives = 281/499 (56%), Gaps = 92/499 (18%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K ++R + ++L++G D+IV A R Y +AV +NFTKGRRT QV A+CLY+ CR
Sbjct: 86 LDKGRQEIRNIASSLSVGGGDDIVGSAHRIYVLAVEKNFTKGRRTSQVAAACLYIVCR-- 143
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL--- 117
Y LGAV+LQLC +L + V K VDPS+F+H+FTDRLL
Sbjct: 144 -----------------YLLGAVFLQLCTLLRLDQHPMVQKPVDPSLFIHRFTDRLLHRI 186
Query: 118 -PGGNKK----VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 172
PG + K + +TA I+ASMK+DWI TGR+PSG+CGAAL +S HGL+ S +D+
Sbjct: 187 APGTSSKNQFAIANTALRIVASMKQDWIQTGRRPSGICGAALLLSTRIHGLECSTADVES 246
Query: 173 IVHICEATLMKRLIEFENTDSGSLTIEDFMA----RKKELHEGVAANLPNNGPKVSGMNE 228
+V++C+AT+ KRL+EF NT++GSLT E+F A R+KE+ ++ NNG + E
Sbjct: 247 VVYVCKATITKRLVEFSNTEAGSLTPEEFEAKAKQREKEMLSVSQTDIVNNGV----IKE 302
Query: 229 VLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA--ERERMVK------- 278
+LC+HKD+G + +A GLC++CY++F+ IS GL+GG+ PPAFQ A ERER++K
Sbjct: 303 ILCEHKDSGAQHYAHGLCKNCYDDFVKISGGLQGGSAPPAFQRAQKERERLLKNKKRKLT 362
Query: 279 --ASAEENSSFERESDSPFMSR-VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV 335
A ++E+ + SP + + K E S + T ++E + + V
Sbjct: 363 AEAISDEDEDLTCTNSSPVAEKAIKKKLEQEEHSYFDADDVTESCVTHETKAEKRYEDSV 422
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
D D ++ SDIDD EQ AKEAA A
Sbjct: 423 D------DEPESLSDIDD-----------------------------EQEAKEAALKAQA 447
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
++ A + + A AAA V SRK ++ K A N PA++A EATR+ML
Sbjct: 448 ESMAA--------VSTSGTAAEIAAATVVMSRKARKHKHGDTA-NCKPAESAAEATRQML 498
Query: 456 TKKRLSSKINYDVLEKLFD 474
KKRLSSK+NY VLEK+F+
Sbjct: 499 EKKRLSSKLNYSVLEKMFN 517
>gi|297789078|ref|XP_002862547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308133|gb|EFH38805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 420
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/288 (55%), Positives = 205/288 (71%), Gaps = 9/288 (3%)
Query: 4 AFDDMRQMKNALNIGES-DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A D++ +++AL IG+ D+++ +A F+ A+ NFTKGRR+E V +SCLYL+CRQ
Sbjct: 74 AIDELMNLRDALGIGDDRDDVIVMASNFFRTALDLNFTKGRRSELVLSSCLYLSCRQLKF 133
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
LLI FS+YL ++VYELG+VYLQ C +LYI + N K VDPSIF+ +FT+ LL G ++
Sbjct: 134 AVLLIHFSSYLRVSVYELGSVYLQFCDMLYITENHNYEKLVDPSIFIPRFTNMLLKGAHR 193
Query: 123 K-----VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
K V DTA DI+ASMKRDW+ TGRKPSG+CGAALY +AL+HG+K SK+DIVKIVHIC
Sbjct: 194 KKVVGTVVDTATDIIASMKRDWMQTGRKPSGICGAALYTAALSHGIKCSKTDIVKIVHIC 253
Query: 178 EATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG 237
EATL KRLIEF NT++ S T ++ ++E + N P VLC H+D
Sbjct: 254 EATLTKRLIEFGNTEAASFTADELSKTERERKKETELRSKRN-PISYKEGVVLCMHQDC- 311
Query: 238 KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEEN 284
KP GLC+SCY+EFM +S GLEGG+DPPAFQ AE+ERM KAS EEN
Sbjct: 312 KPVDYGLCKSCYDEFMKVSGGLEGGSDPPAFQRAEKERMEEKASREEN 359
>gi|303283326|ref|XP_003060954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457305|gb|EEH54604.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1016
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/282 (47%), Positives = 190/282 (67%), Gaps = 8/282 (2%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ K +++Q+ + L I ++I A R Y +AV RNFT+GRRT+QV +CLY+ CRQ+
Sbjct: 94 INKGKHEIQQVADRLGIRPREDITGAAHRLYKLAVQRNFTRGRRTQQVAGACLYIVCRQE 153
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
S+P++LIDFS+ + NVY LGAV+LQLC++L + + K +DPS+F+H+F D+L G
Sbjct: 154 SRPYMLIDFSDVVQTNVYVLGAVFLQLCRLLRLEQHPLISKPIDPSLFIHRFADKLNLGR 213
Query: 121 N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V +TA ++ASMKRDW+ TGR+PSG+CGAAL+V+AL HG + SK D+V +VH+ EA
Sbjct: 214 RMHAVANTALRLVASMKRDWMQTGRRPSGVCGAALWVAALLHGYERSKRDVVAVVHVGEA 273
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKV----SGMNEVLCKHKD 235
TL KR+ EFENT S L+I++F AR K+L E A L ++G + + + C HKD
Sbjct: 274 TLRKRVSEFENTPSAQLSIDEFDARAKDL-EKEQAQLGDSGATLLLGDASTKTMTCVHKD 332
Query: 236 --TGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERER 275
FA G+CR CY E+ +S G GG DPPAFQ AE+ R
Sbjct: 333 HEGAAHFAHGMCRMCYVEYARVSGGSRGGEDPPAFQAAEQRR 374
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 23/127 (18%)
Query: 347 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 406
FSD+DD EV G++H EE +K+IW E+NR+YLE QAAKEA A+ P
Sbjct: 685 TFSDVDDDEVAGFIHTAEEVKLRKVIWSELNRDYLETQAAKEAIL--------AAAPKPP 736
Query: 407 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 466
G + A ++ PA TA EA ++ML+ K++SSKINY
Sbjct: 737 PGSEDADGKKKKQRKKYT---------------HATPADTAAEAAQQMLSSKKISSKINY 781
Query: 467 DVLEKLF 473
D L LF
Sbjct: 782 DALNDLF 788
>gi|357119379|ref|XP_003561419.1| PREDICTED: uncharacterized protein LOC100840180 [Brachypodium
distachyon]
Length = 721
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 184/392 (46%), Positives = 238/392 (60%), Gaps = 44/392 (11%)
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGA 152
+ DE V ++ ++ L + + LL + V DTA I+ASMKRDW+ TGRKPSGLCGA
Sbjct: 306 LTDERTVETPMELNVHL-RASVGLLGKRDNAVSDTALRIVASMKRDWMQTGRKPSGLCGA 364
Query: 153 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGV 212
ALY++AL+HG ++KSDIV +VHICEATL KRLIEFENTDSGSLTIED +A+ E
Sbjct: 365 ALYIAALSHGYNYTKSDIVAVVHICEATLTKRLIEFENTDSGSLTIEDVLAKADE----- 419
Query: 213 AANLPNNGP-KVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEGLEGGADPPAFQV 270
P + P + SG EVLCKHKD + FA GLC CY +F+ +S GLEGGADPPAFQ
Sbjct: 420 --EQPVSKPSRKSG--EVLCKHKDKDIEHFAHGLCEKCYNKFIKMSGGLEGGADPPAFQR 475
Query: 271 AERERMVKASAEENSSFER-----ESDSPFMSR--VDKVQSPEPESIGVPKNCTTQTASN 323
AER+R+ A E ++ + ES+ + D + SP+ +IG K+ T + N
Sbjct: 476 AERQRLEAAKKSEEAAALKEAALGESNCEIQNSDVEDNIISPKKGAIG-DKSLTIPSEQN 534
Query: 324 EGEGDHTKTPGVDATTEASDGS-DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 382
+ +K P V D ++FSDIDD EVDGYLHNEEE HYKKIIWEEMN+EY+E
Sbjct: 535 ANDNIASKDPEVGGENSKPDADPESFSDIDDVEVDGYLHNEEETHYKKIIWEEMNKEYIE 594
Query: 383 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG 442
EQAAKEA AA A G+ Q +K+++R + KN
Sbjct: 595 EQAAKEALAAELAAR--------GVGMGGGQ---------------QKKRRRNEDTKNLS 631
Query: 443 PAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
PA+T EAT ML +K L SKIN + + L++
Sbjct: 632 PAETPAEATYNMLKRKGLGSKINVEAVGGLYN 663
>gi|302772278|ref|XP_002969557.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
gi|300163033|gb|EFJ29645.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
Length = 507
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 139/284 (48%), Positives = 194/284 (68%), Gaps = 23/284 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E+ +++ + ++L+I D+ V A R Y +AV ++FTKGRRT+QV A+CLY+ CRQ+
Sbjct: 83 LERGRNEIGDIADSLSISGRDDAVGAAHRLYVLAVEKSFTKGRRTQQVAAACLYIVCRQE 142
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+KP+LLIDFS+ L +NV +L + + + K VDPS+F+H+FTDRLL
Sbjct: 143 NKPYLLIDFSDSLQVNV------------LLRLEEHPIMAKPVDPSLFIHRFTDRLLGLS 190
Query: 121 N-------KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKI 173
N + +TA I+ASMKRDWI TGRKPSG+CGAAL+VSA HG + SKSD+V +
Sbjct: 191 NGSFGRKHHAIANTALRIVASMKRDWIQTGRKPSGVCGAALFVSAQIHGFECSKSDVVSV 250
Query: 174 VHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKH 233
VH+C TL KRL+EF NT+SGSLT E+F A+ KEL + +P+ K + E+LC+H
Sbjct: 251 VHVCGDTLTKRLVEFGNTESGSLTPEEFEAKAKELE--LQEPVPHVNFK-GHLTEILCEH 307
Query: 234 KDTGKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM 276
K+ G A GLCRSC++EFM +S GLEG ++PPAFQ AE++R
Sbjct: 308 KELGASHHAHGLCRSCFDEFMKVSGGLEGESNPPAFQRAEKKRF 351
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 445 QTALEATRRMLTKKRLSSKINYDVLEKLFD 474
++A EA RRML K+L S++N+DVL+KLFD
Sbjct: 394 KSAAEAARRMLEAKKLGSRVNFDVLDKLFD 423
>gi|308810665|ref|XP_003082641.1| transcription factor IIB (ISS) [Ostreococcus tauri]
gi|116061110|emb|CAL56498.1| transcription factor IIB (ISS) [Ostreococcus tauri]
Length = 728
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/271 (48%), Positives = 185/271 (68%), Gaps = 7/271 (2%)
Query: 7 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 66
+++Q+ + L I +++V A R Y +AV RNFT+GRR QV +CLY+ CRQ+S+P++L
Sbjct: 92 EIKQVADRLAIRPREDVVDAAHRLYKLAVQRNFTRGRRVSQVAGACLYIICRQESRPYML 151
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVC 125
IDF++ L NVY LGAV+LQLC++L + + K +DPS+F+H+F D+L G V
Sbjct: 152 IDFADVLQTNVYVLGAVFLQLCRLLRLEQHPLMQKPIDPSLFIHRFADKLSLGRRMHTVA 211
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+TA ++ASMKRDW+ TGR+P+G+CGAAL+V+A HG SK D+V +VH+ EATL KRL
Sbjct: 212 NTALRLVASMKRDWMQTGRRPNGICGAALWVAAHIHGFNPSKRDVVAVVHVGEATLKKRL 271
Query: 186 IEFENTDSGSLTIEDF--MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT-GKP-FA 241
EFENT S +L++E+F AR E+ E AN S M+ + C HKD+ P FA
Sbjct: 272 SEFENTPSAALSVEEFDTQARTYEIEE--EANRTLKSLPSSSMSVLSCVHKDSENTPHFA 329
Query: 242 CGLCRSCYEEFMTISEGLEGGADPPAFQVAE 272
G+CRSCY +++ IS G GGADPPAF A+
Sbjct: 330 HGMCRSCYIDYVRISGGSMGGADPPAFMRAK 360
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 66/131 (50%), Gaps = 33/131 (25%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
D D SD+DD E+D Y+H+E E ++++W E+N+EYLE QA KE A
Sbjct: 556 DYIDTLSDVDDDEIDSYIHDENEVKLRRVVWAELNKEYLEGQALKEQTPA---------- 605
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 462
+ P K++K+ A PA+T EA + L+KK+ SS
Sbjct: 606 RTLPS--------------------TSKRKKKVAVVP---PAETPAEAVHQALSKKKGSS 642
Query: 463 KINYDVLEKLF 473
KINY+VLE LF
Sbjct: 643 KINYEVLENLF 653
>gi|384247443|gb|EIE20930.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 496
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/273 (46%), Positives = 176/273 (64%), Gaps = 5/273 (1%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ K ++ Q+ + L I D+ V A R Y +A++RNFT+GRRT+ V A+CLY+ CRQ
Sbjct: 86 LNKGRSEVTQLVDRLRIAPRDDTVEAASRLYKLALSRNFTRGRRTQLVAAACLYIVCRQD 145
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
SKPF+LIDFS+ L +NV+ LGAV+L LC++L + + + VDPS++LH+F +RL
Sbjct: 146 SKPFMLIDFSDALQVNVFTLGAVFLHLCKLLRLEEHPMFQRPVDPSLYLHRFANRLCVND 205
Query: 121 N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V +TA ++ASMKRDW+ TGR+PSG+CGAAL+++A HG++ SK D+V IVH+ EA
Sbjct: 206 KFHAVTNTALRLVASMKRDWMQTGRRPSGICGAALFIAAHIHGVEKSKRDVVNIVHVGEA 265
Query: 180 TLMKRLIEFENTDSGSLTIEDF--MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTG 237
TL KR+ EF T SG LTIE+F R E L G + C+H G
Sbjct: 266 TLAKRVKEFALTTSGDLTIEEFEDEGRALEAQHRKELQLNTIGAPAPAHTKGGCQHLTAG 325
Query: 238 --KPFACGLCRSCYEEFMTISEGLEGGADPPAF 268
+ FA G+C+ CYEEF+ ++ G GADPPAF
Sbjct: 326 AAQHFAHGMCKVCYEEFLEVTGGTSAGADPPAF 358
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 56/118 (47%), Gaps = 37/118 (31%)
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
YLH EE K++IW E+NRE+L+ Q+AK AA +A A PE +
Sbjct: 411 YLHTPEEAKLKELIWTELNREFLDCQSAKAAALESAAAKAR------PEDMLE------- 457
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
PA+T EATRRML K+LSSKINY+ L LF ++
Sbjct: 458 ------------------------PAETPEEATRRMLDAKKLSSKINYNALANLFSET 491
>gi|412991514|emb|CCO16359.1| predicted protein [Bathycoccus prasinos]
Length = 846
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 184/282 (65%), Gaps = 7/282 (2%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ K ++ Q+ + L + ++I A R Y IAV+RNFT+GRRT QV +CLY+ CRQ+
Sbjct: 89 VNKGKQEINQIADRLAMKPREDITTSAHRLYKIAVSRNFTRGRRTAQVAGACLYVVCRQE 148
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
++P++LIDFS+ L NVY LG V+LQLC+++ + + + +DPS+F+H+F D++ G
Sbjct: 149 NRPYMLIDFSDVLQTNVYVLGGVFLQLCRLMRLEQHPLMQRPIDPSLFIHRFADKMNLGK 208
Query: 121 N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V +TA ++ASMKRDW+ TGR+P+G+CGAAL+V++ HG SKSD+V IVHI E
Sbjct: 209 RVHSVSNTALRLVASMKRDWMQTGRRPAGICGAALWVASHVHGFDRSKSDVVSIVHIGEQ 268
Query: 180 TLMKRLIEFENTDSGSLTIEDFMAR-KKELHEGVAANLPNNGPKVSGMNEVLCKHKD--- 235
TL KR+ EF +T + L++E+F A+ +K ++ + SG + CKH+D
Sbjct: 269 TLKKRITEFSSTPAALLSVEEFDAQAQKYENDDFIGSKEQQDLICSGSTTLTCKHRDDDN 328
Query: 236 TGKPFACGLCRSCYEEFMTISEGLE--GGADPPAFQVAERER 275
+ F G+CR+CY +++ +S G GG DPPAF A+++R
Sbjct: 329 MPEHFQHGMCRACYIDYVKVSGGTTFLGGMDPPAFTAAQKKR 370
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 25/143 (17%)
Query: 334 GVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAA 392
GVD T + + D SDI+D +++ Y++N+E+ + K++IW EMN++YLE QAAKEAA+
Sbjct: 620 GVDTPTNDEEEMRDVCSDIEDEDINEYMNNQEQVNLKRVIWSEMNKDYLESQAAKEAASK 679
Query: 393 AAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 452
A AA+E +KE++ +RA A A+ A
Sbjct: 680 DA----------------AARESNQPPRRKYNTKKKEEKYQRAENA--------AVAAQT 715
Query: 453 RMLTKKRLSSKINYDVLEKLFDD 475
++ K+ +SSKINY+ L+ LFDD
Sbjct: 716 VLIKKRGVSSKINYEALQNLFDD 738
>gi|413948298|gb|AFW80947.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
Length = 374
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 165/350 (47%), Positives = 209/350 (59%), Gaps = 45/350 (12%)
Query: 135 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSG 194
MKRDW+ TGRKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIEFENTDSG
Sbjct: 1 MKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSG 60
Query: 195 SLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP---FACGLCRSCYEE 251
SLTIE+F+A E +E A++ PK SG E+LCKHK GK FA GLC C+ +
Sbjct: 61 SLTIEEFLATADEYNE---ASVSKYSPK-SG--EILCKHK--GKDFEHFAHGLCEKCFNK 112
Query: 252 FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIG 311
F +S GLEGGA+PPAFQ AE +R+ A E ++ +E+ + Q+ E ES
Sbjct: 113 FTKLSGGLEGGANPPAFQRAENKRLEAAKRAEEAAAVKEAAL--EESLCDTQNSEIESTT 170
Query: 312 VPKNC-TTQTASNEGEGD--HTKTPGVDA-----TTEASDGSDNFSDIDDFEVDGYLHNE 363
PK + +S G G + P D E + ++ SDIDD EVD YLHNE
Sbjct: 171 TPKKALSGDKSSTIGSGGLINDSVPPKDPEEGGENCEGNADPESLSDIDDVEVDWYLHNE 230
Query: 364 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 423
EE YKKIIWEEMN+EYLEEQAAKEA A A AA +
Sbjct: 231 EETQYKKIIWEEMNKEYLEEQAAKEALA------------------------AELAARGI 266
Query: 424 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
+K++KR + K+S PA T EAT ML +K L SKIN + +L+
Sbjct: 267 VVEEGKKKRKRNEDTKSSTPADTPAEATYNMLKRKGLGSKINEGAVGELY 316
>gi|357117994|ref|XP_003560745.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like
[Brachypodium distachyon]
Length = 516
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/277 (45%), Positives = 168/277 (60%), Gaps = 57/277 (20%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ K D++ Q+ +L++G D I+ +A + Y +AV NFT+GRRT QV A+CLY+A RQ
Sbjct: 72 LMKGRDEIWQIVTSLHVGGGDTIIDMAHKIYTLAVDHNFTRGRRTTQVAAACLYIAVRQS 131
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
K +LLIDFS+YL I+VY LGAV+LQLCQVL +A+ V K +DPS+F+H+FT+R+ P
Sbjct: 132 KKAYLLIDFSDYLKISVYVLGAVFLQLCQVLLLAEHPIVQKLIDPSLFIHRFTERIQP-- 189
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
P+ ++KSDI +VHICEAT
Sbjct: 190 -------------------------PN-----------------YTKSDIFAVVHICEAT 207
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT-GKP 239
L KRLIEFENTDSGSL IEDF+A+ E P++ EVLCKHKD +
Sbjct: 208 LTKRLIEFENTDSGSLMIEDFLAKADE-------EQPSHKS-----GEVLCKHKDKDAEH 255
Query: 240 FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM 276
A GLC CY +F+ +S GLEGGADPPAFQ AE++R+
Sbjct: 256 LAHGLCEKCYNKFIKMSGGLEGGADPPAFQQAEKQRL 292
>gi|307107018|gb|EFN55262.1| hypothetical protein CHLNCDRAFT_57908 [Chlorella variabilis]
Length = 861
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/278 (42%), Positives = 170/278 (61%), Gaps = 12/278 (4%)
Query: 2 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 61
++ ++ + + L++ +E + A R Y +A+ R FT+GRRT QV A+C+YL CRQ S
Sbjct: 87 QRGRHEIAHLVDQLSVRPREESIEAAHRLYKLALQRGFTRGRRTNQVAAACVYLVCRQDS 146
Query: 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 121
KPFLLIDFS+ L INV+ LGAV+LQL ++L + + K VDPS+++H+F DRL G
Sbjct: 147 KPFLLIDFSDALQINVFTLGAVFLQLAKLLRLTEHPMFAKPVDPSLYIHRFADRLDFGRQ 206
Query: 122 -KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
V +TA ++ASMKRDWI TGR+PSG+CGAA+Y++A HG + S D+V +VHI E T
Sbjct: 207 MHAVANTALRLVASMKRDWIQTGRRPSGICGAAIYIAAHIHGFERSVRDVVAVVHIGEHT 266
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGP--KVSGMNEVLCKHKDTGK 238
L KRL EF +T + + T ++F R K++ L P V + C+H +
Sbjct: 267 LSKRLYEFSSTSASAYTADEFEERVKQIEADETERLEAAQPVEPVGLLESTGCEHLREWR 326
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM 276
P A G+C S S G+ GA+PPAF R+ M
Sbjct: 327 P-AAGVCDS--------SGGVYNGANPPAFDRNRRKEM 355
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 340 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 399
E G D SDI D ++D YL ++ E K+ IW MNR++LE+QAAK AA AA+ A+
Sbjct: 575 EEEGGDDLLSDIGDSDIDMYLADDAEVKCKEEIWNMMNRDWLEKQAAKRAAQEAAERAVA 634
Query: 400 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 459
A V K K R A + PA+TA EA RML ++
Sbjct: 635 EQQAAQEAAEAAGVAYKRGRGRPVGS--KTKNHHRGAGMADLPPAETAQEAAMRMLDHRK 692
Query: 460 LSSKINYDVLEKLF 473
LS+KINY L LF
Sbjct: 693 LSNKINYSALADLF 706
>gi|224059412|ref|XP_002299842.1| predicted protein [Populus trichocarpa]
gi|222847100|gb|EEE84647.1| predicted protein [Populus trichocarpa]
Length = 264
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/164 (62%), Positives = 132/164 (80%)
Query: 35 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94
V RNFTKGRRT+QVQA+CLY+ACR+ KP+LLIDFSNYL IN+Y LGAV+LQLC+VL +
Sbjct: 1 VERNFTKGRRTDQVQAACLYIACRENRKPYLLIDFSNYLQINIYVLGAVFLQLCKVLNLT 60
Query: 95 DESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAAL 154
+ + K +DPSIF+HK+T L G N+++ D A I+ASM W+ TGR+PS L GAAL
Sbjct: 61 EHAICQKLLDPSIFIHKYTASLSGGKNREISDDALTIIASMNHHWMQTGRRPSALWGAAL 120
Query: 155 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 198
Y+SA++HGL SKSDI+++VH+C TL KRLIEFENT+SGSLT+
Sbjct: 121 YISAISHGLNCSKSDILRLVHVCGKTLSKRLIEFENTESGSLTL 164
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 59/76 (77%)
Query: 383 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG 442
EQ AKEAA A K A E ++KNCPE LQAA++L AA A +AKS+KE QQKRAAEA+NS
Sbjct: 173 EQEAKEAATATHKEAWEENFKNCPEDLQAARKLDAAVKADLAKSKKEMQQKRAAEARNSV 232
Query: 443 PAQTALEATRRMLTKK 458
PA++A EA RMLTKK
Sbjct: 233 PAKSAAEAVHRMLTKK 248
>gi|4262235|gb|AAD14528.1| putative transcription factor [Arabidopsis thaliana]
Length = 257
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 133/165 (80%), Gaps = 3/165 (1%)
Query: 37 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 96
+NFTKGRR E VQ+SCLYLACR L IDFS+YL ++VYELG+VYLQLC++LY+
Sbjct: 3 QNFTKGRRAELVQSSCLYLACRDMKISLLFIDFSSYLRVSVYELGSVYLQLCEMLYLVQN 62
Query: 97 SNVLKQVDPSIFLHKFTDRLLPGGNKK---VCDTARDILASMKRDWITTGRKPSGLCGAA 153
N + VDPSIF+ +FT+ LL G + K V +TA++I++SMKRDWI TGRKPSG+CGAA
Sbjct: 63 KNYEELVDPSIFIPRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKPSGICGAA 122
Query: 154 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 198
+Y++AL+HG+ +S++DI K+VH+CEAT+ KRL EF NT++GSLT+
Sbjct: 123 IYMAALSHGIMYSRADIAKVVHMCEATITKRLNEFANTEAGSLTL 167
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 18/91 (19%)
Query: 371 IIWEEMNREY---LEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSR 427
+I E+ RE+ LE++ +E AA NCPE A+ L A+ AAVA SR
Sbjct: 175 LISEQRKREWKKQLEKKTREELAA------------NCPED---ARNLVEASKAAVANSR 219
Query: 428 KEKQQKRAAEAKNSGPAQTALEATRRMLTKK 458
KEK++KRA EAKN+ P+ TA EA R L +K
Sbjct: 220 KEKRRKRAEEAKNAPPSATATEAVCRTLERK 250
>gi|403373133|gb|EJY86480.1| hypothetical protein OXYTRI_13619 [Oxytricha trifallax]
Length = 521
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 211/385 (54%), Gaps = 25/385 (6%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
A +G S IV +RF+ +A +NF +GR T+ V A CLY+ACR++ P LLIDFS+ L
Sbjct: 86 ASQLGMSQYIVEAGQRFFKLAYEKNFIQGRNTKHVAAVCLYIACRKEKTPHLLIDFSDVL 145
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 132
NVY LG+VYL+L Q L++ + +DPSIF+H+F +L G + +V TA +L
Sbjct: 146 QTNVYILGSVYLKLVQRLFLE-----VPLIDPSIFIHRFCSKLEFEGKSHQVALTALRLL 200
Query: 133 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 192
+MKR WITTGR+P+GLCGAA+ ++A H K + IV++VH+CE T+ KRL EF+NT
Sbjct: 201 QTMKRAWITTGRRPNGLCGAAILIAARYHNYKRNIGQIVRVVHVCEETIRKRLDEFKNTR 260
Query: 193 SGSLTIEDFMARKKELHEGVAANLPN----NGPKVSGMN--EVLCKH---KDTGKP-FAC 242
+ LT ++F + ++ + +A N NG MN + H ++ P F
Sbjct: 261 TAQLTRDEFQSIEQGGRQSSSATNTNEQYQNGTNGQLMNIEKSPSNHSVEENMDPPSFTR 320
Query: 243 GLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKV 302
LC+ E + E L + AFQ+ ER++K + N S++ E P ++ +
Sbjct: 321 NLCKKKLEITEDMDE-LHKMLEEKAFQI--EERLMKYEGQRN-SYQEEVKQPMTPPINDM 376
Query: 303 QSPEPESIGVPKNCTTQTASNEGE---GDHTKTPGVDATTEASDGSDNFSDIDDFEVDGY 359
+ I +N N+ + D + E++DG + SDIDD E+D
Sbjct: 377 DL--YQQIDTSQNMLVPYQFNQPQIQIQDTNRLQMALKQFESNDGVETLSDIDDAEIDQL 434
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQ 384
+ EEE+ K I+W +NR+++ EQ
Sbjct: 435 ILTEEERKLKTILWNNLNRDWILEQ 459
>gi|168035366|ref|XP_001770181.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678558|gb|EDQ65015.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 166
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 128/165 (77%), Gaps = 1/165 (0%)
Query: 35 VARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94
V RNFT+GR T +V +CLY+ CRQ++KP++LIDFS+ L NVY LGAV+LQLCQ+L +
Sbjct: 1 VERNFTRGRPTPRVAGACLYIVCRQENKPYMLIDFSDSLQTNVYVLGAVFLQLCQLLRLE 60
Query: 95 DESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITTGRKPSGLCGAA 153
+ + VDPS+F+H+F DRL G V ++A ++ASMKRDW+ TGR+PSG+CGAA
Sbjct: 61 QHPIMQRPVDPSLFIHRFADRLQFGKKMHAVANSALRLVASMKRDWMQTGRRPSGVCGAA 120
Query: 154 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 198
L+++A HG + SK+D+V +VHICEATL KRL+EFE T+SGSLT+
Sbjct: 121 LFIAAHIHGFERSKADVVSVVHICEATLKKRLVEFEQTESGSLTV 165
>gi|355673453|gb|AER95177.1| BRF1-like protein, subunit of RNA polymerase III transcription
initiation factor IIIB [Mustela putorius furo]
Length = 610
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 228/474 (48%), Gaps = 70/474 (14%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GRR V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 47 FFKMAVSKHLTRGRRMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 106
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 107 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 161
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 203
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 162 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEG 221
Query: 204 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 249
R K+L + ++ L + ++S + + + +P A G S
Sbjct: 222 ECDPPSYTAGQRKLRMKQLEQVLSKKLEDVEGEISSYQDAIESELENSRPKAKGTLASLT 281
Query: 250 EEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 307
+ + L G DP E E + A++ N F RE +S ++ P
Sbjct: 282 RDGSVEDSASSLFGEEDP------EDEELQAAASHLNKDFYRELLGAGVSSSSG-EAGGP 334
Query: 308 ESIGVPKNCTT-----QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDG 358
E P + TA++ G D + + + T DG + S IDD E+D
Sbjct: 335 EGGSRPPALESLLGPLPTAASLGISDSIRECISSQSQEPTGARGDGELDLSGIDDLEIDR 394
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
Y+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 395 YILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY 436
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++ + + A TA EA +ML +K++SSKINY VL+ L
Sbjct: 437 ---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLQDL 481
>gi|41054023|ref|NP_956192.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIBa [Danio rerio]
gi|28422474|gb|AAH46877.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Danio rerio]
gi|182889790|gb|AAI65640.1| Brf1 protein [Danio rerio]
Length = 661
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 232/473 (49%), Gaps = 82/473 (17%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
FY +A++++ TKGR++ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 111 FYKMALSKHLTKGRKSTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLAR 170
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPS 147
L I + +DP +++ +F +LL G K +V TA +L MKRDW+ TGR+PS
Sbjct: 171 ELCINAPA-----IDPCLYIPRFA-QLLEFGEKSHEVSMTALRLLQRMKRDWMHTGRRPS 224
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKE 207
GLCGAAL V+A H + + +++ +V +CEATL KRL EFE+T + LTIE+FM K +
Sbjct: 225 GLCGAALLVAARMHEFRRTIKEVISVVKVCEATLRKRLYEFEDTPTSELTIEEFM--KTD 282
Query: 208 LHE-----GVAANLPNN---------GPKVSGMNEVLCKHKD-------TGKPFACGLCR 246
L + AA L KV + +C ++D + +P A G+
Sbjct: 283 LEQECDPPSFAAGLRKQKLKQIEQELAKKVDDIEGEICGYQDEIEVELESCRPKARGIYA 342
Query: 247 SCYEE----FMTISEGLEGGAD---PPAFQVAERERMVKASAEENSSFERESDSPFMSRV 299
SC E + S L+G D A + + E S +R S S + +
Sbjct: 343 SCSREDDVVSLASSSHLDGEDDELRAAASHLYGENEEQEQDGERVSLTKRPSLSLLLGAL 402
Query: 300 DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGY 359
P S+G+ ++ T E + EA G + S ID+ E+D Y
Sbjct: 403 -----PTSASLGLSESITKMGEEKEND------------VEAEGGELDLSGIDEDEIDRY 445
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 419
+ N++E K +W N +YL+EQ KE A K E +YK
Sbjct: 446 ILNDKEVKVKTELWMIQNADYLKEQKEKEERIAKEKE--EGTYKE--------------- 488
Query: 420 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
RK ++ R E N A TA EA +ML +KR+S+KINYDVL+ L
Sbjct: 489 -------RKPRKSTRRREPIN---ANTADEAIEKMLEQKRISTKINYDVLKDL 531
>gi|395861901|ref|XP_003803212.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Otolemur garnettii]
Length = 651
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 153/495 (30%), Positives = 236/495 (47%), Gaps = 70/495 (14%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+++ T+GRR V A+CLYL CR + P +L+
Sbjct: 66 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRMAHVTAACLYLVCRTEGTPHMLL 123
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 124 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 178
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 179 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 238
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 239 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 298
Query: 228 EVLCKHKDTGKPFACGLCRSCYEE--FMTISEGLEGGADPPAFQVAERERMVKASAEENS 285
+ + + +P A G S ++ + L G + E E + A++ N
Sbjct: 299 DAIEIELENSRPKAKGALASLTKDGPVEDTTSSLLG------EEDTEDEELEAAASHLNK 352
Query: 286 SFERE---SDSPFMSRV-----DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDA 337
F +E S++P S ++ P ES+ P +E + + D
Sbjct: 353 DFYQELLGSNTPGSSEAAGSPEGVIRPPALESLLGPLPTAASLGISESIRECISSQSRDP 412
Query: 338 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 397
T DG + S IDD E+D Y+ NE E K +W + N EYL EQ+ KEA A K
Sbjct: 413 TDTCGDGELDLSGIDDHEIDRYILNEAEARVKAELWMKENAEYLREQSEKEARIAKEK-- 470
Query: 398 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 457
EL KE + K++ + + A TA EA +ML +
Sbjct: 471 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQ 505
Query: 458 KRLSSKINYDVLEKL 472
K++SSKINY VL L
Sbjct: 506 KKISSKINYSVLRDL 520
>gi|395861899|ref|XP_003803211.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Otolemur garnettii]
Length = 678
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 153/495 (30%), Positives = 236/495 (47%), Gaps = 70/495 (14%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+++ T+GRR V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRMAHVTAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 228 EVLCKHKDTGKPFACGLCRSCYEE--FMTISEGLEGGADPPAFQVAERERMVKASAEENS 285
+ + + +P A G S ++ + L G + E E + A++ N
Sbjct: 326 DAIEIELENSRPKAKGALASLTKDGPVEDTTSSLLG------EEDTEDEELEAAASHLNK 379
Query: 286 SFERE---SDSPFMSRV-----DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDA 337
F +E S++P S ++ P ES+ P +E + + D
Sbjct: 380 DFYQELLGSNTPGSSEAAGSPEGVIRPPALESLLGPLPTAASLGISESIRECISSQSRDP 439
Query: 338 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 397
T DG + S IDD E+D Y+ NE E K +W + N EYL EQ+ KEA A K
Sbjct: 440 TDTCGDGELDLSGIDDHEIDRYILNEAEARVKAELWMKENAEYLREQSEKEARIAKEK-- 497
Query: 398 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 457
EL KE + K++ + + A TA EA +ML +
Sbjct: 498 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQ 532
Query: 458 KRLSSKINYDVLEKL 472
K++SSKINY VL L
Sbjct: 533 KKISSKINYSVLRDL 547
>gi|70608137|ref|NP_082469.2| transcription factor IIIB 90 kDa subunit [Mus musculus]
gi|148686622|gb|EDL18569.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 228/473 (48%), Gaps = 70/473 (14%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 203
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEE 287
Query: 204 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 249
R K+L + ++ L ++S + + + +P A G +
Sbjct: 288 ECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLS 347
Query: 250 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSRVDKVQSPE 306
++ G + + P + E E + A++ N F RE D + D
Sbjct: 348 KD----GSGEDATSSPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAAGDPDGGSR 403
Query: 307 P---ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGY 359
P ES+ P TA++ G D + +P D + DG + S IDD E+D Y
Sbjct: 404 PLALESLLGP----LPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRY 459
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 419
+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 460 ILNESEARVKAELWMRENAEYLREQKEKEARIAKEK------------------ELGIY- 500
Query: 420 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 501 --------KEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>gi|71153596|sp|Q8CFK2.1|TF3B_MOUSE RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=mTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1
gi|23512360|gb|AAH37224.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 228/473 (48%), Gaps = 70/473 (14%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 203
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEE 287
Query: 204 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 249
R K+L + ++ L ++S + + + +P A G +
Sbjct: 288 ECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLS 347
Query: 250 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSRVDKVQSPE 306
++ G + + P + E E + A++ N F RE D + D
Sbjct: 348 KD----GSGEDATSSPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAAGDPDGGSR 403
Query: 307 P---ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGY 359
P ES+ P TA++ G D + +P D + DG + S IDD E+D Y
Sbjct: 404 PLALESLLGP----LPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRY 459
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 419
+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 460 ILNESEARVKAELWMRENAEYLREQKEKEARIAKEK------------------ELGIY- 500
Query: 420 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 501 --------KEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>gi|351698489|gb|EHB01408.1| Transcription factor IIIB 90 kDa subunit [Heterocephalus glaber]
Length = 638
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 227/476 (47%), Gaps = 75/476 (15%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +A ++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 74 FFKMAANKSLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 133
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 134 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 188
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 203
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 189 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEE 248
Query: 204 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 249
R K+L + ++ L ++S + + + +P A R
Sbjct: 249 ECDPPSYTAGQRKLRMKQLEQVLSKQLEEVEGEISSYQDAIENELENSRPKA----RGAL 304
Query: 250 EEFMTISEGLEGGADPPAF--QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 307
F +GL F + AE E + A++ N F RE D V+SPE
Sbjct: 305 ANFS--KDGLIEDTTSSVFGEEDAEDEELEAAASHMNKDFYRELLGGGSGSSDAVESPEE 362
Query: 308 -------ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEV 356
ES+ P TA++ G D + +P D + DG + S IDD E+
Sbjct: 363 GGQPLALESLLGP----LPTAASLGISDSIRECISSPSRDPKDTSGDGELDLSGIDDLEI 418
Query: 357 DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELA 416
D Y+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 419 DRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELG 460
Query: 417 AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++ + + A +A EA +ML +K++SSKINY VL L
Sbjct: 461 IY---------KEHKPKKSCKRREPIQASSAREAIEKMLEQKKISSKINYSVLRDL 507
>gi|224034963|gb|ACN36557.1| unknown [Zea mays]
Length = 195
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/161 (60%), Positives = 123/161 (76%), Gaps = 5/161 (3%)
Query: 58 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 117
RQ K +LLIDFS++L I+VY LGAV+LQLCQVL +A+ V K VDPS+F+H+FT LL
Sbjct: 5 RQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAEHPVVQKLVDPSLFIHRFTKLLL 64
Query: 118 PGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
G N V DTA I+ASMKRDW+ T RKPSGLCGAALY++AL+HG ++K+DIV +VH
Sbjct: 65 GLGRRNNDVSDTALRIVASMKRDWMQTRRKPSGLCGAALYIAALSHGCNYTKADIVSVVH 124
Query: 176 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 216
+CEATL KRLIEFENTDSGSLT+ + M K L + + +L
Sbjct: 125 VCEATLTKRLIEFENTDSGSLTLMNLM---KSLFQNIRPSL 162
>gi|297696024|ref|XP_002825220.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Pongo abelii]
Length = 650
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 154/495 (31%), Positives = 235/495 (47%), Gaps = 71/495 (14%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 66 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 123
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 124 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 178
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 179 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 238
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 239 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 298
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENS 285
+ + + +P A G S ++ T + L G + E E + A++ N
Sbjct: 299 DAIEIELENSRPKAKGGLASLAKDGSTEDTTSSLCG------EEDTEDEELEAAASHLNK 352
Query: 286 SFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDA 337
RE + SPE P ++G + TA++ G D + + D
Sbjct: 353 DLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDP 411
Query: 338 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 397
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 412 KDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK-- 469
Query: 398 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 457
EL KE + K++ + + A TA EA +ML +
Sbjct: 470 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQ 504
Query: 458 KRLSSKINYDVLEKL 472
K++SSKINY VL L
Sbjct: 505 KKISSKINYSVLRGL 519
>gi|348554704|ref|XP_003463165.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Cavia porcellus]
Length = 650
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 228/479 (47%), Gaps = 81/479 (16%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV ++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 86 FFKMAVNKSLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 145
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 146 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQCMKRDWMHTGRRPSG 200
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 203
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 201 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEG 260
Query: 204 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 249
R K+L + ++ L ++S + + + +P A G
Sbjct: 261 ECDPPSYTAGQRKLRMKQLEQVLSKQLEEVEGEISSYQDAIEIELENSRPKARG------ 314
Query: 250 EEFMTISEGLEGGADPPAFQV-----AERERMVKASAEENSSFERESDSPFMSRVDKVQS 304
+S+ +G + + AE E + A++ N F RE D V+
Sbjct: 315 -ALANLSK--DGSVEDTTSSIFGEEDAEDEELEAAASHMNKDFYRELLGGGSGSSDAVEI 371
Query: 305 PEP-------ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDD 353
PE ES+ P TA++ G D + +P D + DG + S IDD
Sbjct: 372 PEEGGHPLALESLLGP----LPTAASLGISDSIRECISSPNRDPKDASGDGELDLSGIDD 427
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 428 LEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ 469
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
EL KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 470 ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRDL 519
>gi|338753410|ref|NP_001229717.1| transcription factor IIIB 90 kDa subunit isoform 6 [Homo sapiens]
gi|397470869|ref|XP_003807034.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 3 [Pan
paniscus]
gi|56270588|gb|AAH86856.1| BRF1 protein [Homo sapiens]
Length = 650
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 153/494 (30%), Positives = 234/494 (47%), Gaps = 69/494 (13%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 66 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 123
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 124 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 178
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 179 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 238
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 239 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 298
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE-NSS 286
+ + + +P A G S ++ T E A + + ++A+A N
Sbjct: 299 DAIEIELENSRPKAKGGLASLAKDGST-----EDTASSLCGEEDTEDEELEAAASHLNKD 353
Query: 287 FERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDAT 338
RE + SPE P ++G + TA++ G D + + D
Sbjct: 354 LYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPK 412
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 413 DASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK--- 469
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 458
EL KE + K++ + + A TA EA +ML +K
Sbjct: 470 ---------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQK 505
Query: 459 RLSSKINYDVLEKL 472
++SSKINY VL L
Sbjct: 506 KISSKINYSVLRGL 519
>gi|395746383|ref|XP_002825219.2| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Pongo abelii]
Length = 677
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 154/495 (31%), Positives = 235/495 (47%), Gaps = 71/495 (14%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENS 285
+ + + +P A G S ++ T + L G + E E + A++ N
Sbjct: 326 DAIEIELENSRPKAKGGLASLAKDGSTEDTTSSLCG------EEDTEDEELEAAASHLNK 379
Query: 286 SFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDA 337
RE + SPE P ++G + TA++ G D + + D
Sbjct: 380 DLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDP 438
Query: 338 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 397
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 439 KDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK-- 496
Query: 398 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 457
EL KE + K++ + + A TA EA +ML +
Sbjct: 497 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQ 531
Query: 458 KRLSSKINYDVLEKL 472
K++SSKINY VL L
Sbjct: 532 KKISSKINYSVLRGL 546
>gi|22035556|ref|NP_001510.2| transcription factor IIIB 90 kDa subunit isoform 1 [Homo sapiens]
gi|397470867|ref|XP_003807033.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
paniscus]
gi|20455319|sp|Q92994.1|TF3B_HUMAN RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=hTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1; Short=hBRF; AltName: Full=TAF3B2;
AltName: Full=TATA box-binding protein-associated
factor, RNA polymerase III, subunit 2
gi|1737205|gb|AAB38876.1| TFIIB related factor hBRF [Homo sapiens]
gi|119602316|gb|EAW81910.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_d
[Homo sapiens]
gi|261857828|dbj|BAI45436.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [synthetic construct]
gi|410213426|gb|JAA03932.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410254028|gb|JAA14981.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410306454|gb|JAA31827.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410332909|gb|JAA35401.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
Length = 677
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 153/494 (30%), Positives = 234/494 (47%), Gaps = 69/494 (13%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE-NSS 286
+ + + +P A G S ++ T E A + + ++A+A N
Sbjct: 326 DAIEIELENSRPKAKGGLASLAKDGST-----EDTASSLCGEEDTEDEELEAAASHLNKD 380
Query: 287 FERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDAT 338
RE + SPE P ++G + TA++ G D + + D
Sbjct: 381 LYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPK 439
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 440 DASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK--- 496
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 458
EL KE + K++ + + A TA EA +ML +K
Sbjct: 497 ---------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQK 532
Query: 459 RLSSKINYDVLEKL 472
++SSKINY VL L
Sbjct: 533 KISSKINYSVLRGL 546
>gi|348554702|ref|XP_003463164.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Cavia porcellus]
Length = 677
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 228/479 (47%), Gaps = 81/479 (16%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV ++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVNKSLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQCMKRDWMHTGRRPSG 227
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 203
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEG 287
Query: 204 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 249
R K+L + ++ L ++S + + + +P A G
Sbjct: 288 ECDPPSYTAGQRKLRMKQLEQVLSKQLEEVEGEISSYQDAIEIELENSRPKARG------ 341
Query: 250 EEFMTISEGLEGGADPPAFQV-----AERERMVKASAEENSSFERESDSPFMSRVDKVQS 304
+S+ +G + + AE E + A++ N F RE D V+
Sbjct: 342 -ALANLSK--DGSVEDTTSSIFGEEDAEDEELEAAASHMNKDFYRELLGGGSGSSDAVEI 398
Query: 305 PEP-------ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDD 353
PE ES+ P TA++ G D + +P D + DG + S IDD
Sbjct: 399 PEEGGHPLALESLLGP----LPTAASLGISDSIRECISSPNRDPKDASGDGELDLSGIDD 454
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 455 LEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ 496
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
EL KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 497 ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRDL 546
>gi|189238877|ref|XP_973702.2| PREDICTED: similar to transcription factor IIIB 90 kDa subunit
(TFIIIB90) [Tribolium castaneum]
Length = 617
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 160/480 (33%), Positives = 235/480 (48%), Gaps = 62/480 (12%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KA + + Q+ N L + + + A F+ +A+ RN TKGR+ V A+C+YL CR +
Sbjct: 87 LRKARNGITQLCNQLQLNQ--HCIDTACNFFKMALNRNLTKGRKNTHVHAACVYLTCRTE 144
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
LLID S+ L I YELG YL+L Q L I + VDP +++ +F +L G
Sbjct: 145 GTAHLLIDISDVLQICCYELGRTYLKLSQALSIN-----IPAVDPCLYILRFAAKLEFGS 199
Query: 121 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++V +TA ++ MKRD I +GR+PSGLCGAAL ++A H S SDIVKIV + E+
Sbjct: 200 KTQQVANTALRLVQRMKRDSIHSGRRPSGLCGAALLIAARLHEFGRSASDIVKIVKVHES 259
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP 239
TL KRLIEF +T S +LT+E+FM V + P + KD +
Sbjct: 260 TLRKRLIEFGDTPSSALTLEEFMT--------VDLEEEQDPPSFKA-----ARKKDKER- 305
Query: 240 FACGLCRSCYEEFMTISE-----GLEGGADPPAFQVAERERMVKASAEENSSFERESDSP 294
L R EE +I+E ++ D ++ER + +E + F RES
Sbjct: 306 ----LQRLMEEEAESITELQQEIEMQLNRDAKMKSRKKKERDTE-EIQETNRFIRESTMG 360
Query: 295 FMSRVDKVQSPE-PESIGVP-KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 352
++++ + ++ E PE P K AS T + D F DID
Sbjct: 361 TINQIIQEEAIEDPEIAKEPVKELGPDIASMGLASSLEDTSNAVQPPQPLDVDMTFDDID 420
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D E+D Y+ +E E K IW + N +LEEQ K E LQ
Sbjct: 421 DEELDSYIMSEHESQNKNAIWLKRNAAFLEEQKIK------------------AEKLQKE 462
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
+E + + EK+++R K GP +A EA ++L +K++SSKINYDVL+ L
Sbjct: 463 RE----------EGKPEKKKRRNVRRKPIGPTNSAGEAIEKILQEKKISSKINYDVLKSL 512
>gi|194225425|ref|XP_001494856.2| PREDICTED: transcription factor IIIB 90 kDa subunit, partial [Equus
caballus]
Length = 620
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 154/476 (32%), Positives = 229/476 (48%), Gaps = 74/476 (15%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 56 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 115
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 116 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 170
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 203
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 171 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFMKIDLEE 230
Query: 204 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 249
R KEL + ++ L ++S + + + +P A G S
Sbjct: 231 ECDPPSYTAGQRKLRMKELEQVLSKQLEEVEGEISSYQDAIEIELENSRPKAKGALAS-- 288
Query: 250 EEFMTISEGLEGGADPP-AFQVAERERMVKASAEENSSFERE---SDSPFMSRVD----- 300
+T +E A + AE E + A++ N F RE S +P S
Sbjct: 289 ---LTKDGSVEDTASSLFGEEDAEDEELEAAASHLNKDFYRELLGSGNPGSSEAGGSPEA 345
Query: 301 KVQSPEPESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEV 356
+ P ES+ P TA++ G D + + D + DG + S IDD E+
Sbjct: 346 GSRPPALESLLGP----LPTAASLGISDSIRECISSQSRDPKDASGDGELDLSGIDDLEI 401
Query: 357 DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELA 416
D Y+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 402 DRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELG 443
Query: 417 AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 444 IY---------KEHKPKKSCKRREPIQASTAGEAIEKMLEQKKISSKINYSVLRDL 490
>gi|196016326|ref|XP_002118016.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
gi|190579403|gb|EDV19499.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
Length = 583
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/465 (30%), Positives = 225/465 (48%), Gaps = 80/465 (17%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ + RF+ +AV + T+GR+T V A+CLY+ CR + +L+DFS+ L +NVY LG
Sbjct: 103 IDMGYRFFKMAVNKRLTRGRKTSHVVAACLYIVCRVED---MLLDFSDILQVNVYVLGKT 159
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 142
YL++ L I + +DP +++H+F ++L G VC A ++A MKRDW+
Sbjct: 160 YLRITAALSIN-----IPAIDPCLYIHRFANKLEFGDKTHDVCMMALRLVARMKRDWMHH 214
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGA L VSA HG +K I+++V +CEATL KRL EFE T S LTI++F
Sbjct: 215 GRRPSGLCGAGLLVSARLHGYNRTKKQIIRVVRVCEATLRKRLGEFEETPSAKLTIDEF- 273
Query: 203 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 262
+K +L E P + K + L E I E LE
Sbjct: 274 -QKIDLEE-------EQDPPSFTQSRKRAKQFQEDPVISTDLAG----EVQAIQEELE-- 319
Query: 263 ADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVD----KVQSPEPESIGVPKNCTT 318
+V E++R+++ + N E+ + P ++ + ++ P P T
Sbjct: 320 ------KVLEKKRLLEDVEQSNQEEEKRDNIPVLNSTNSYCTRLSGPLP---------TV 364
Query: 319 QTASNEGEGDHTKTPGVDATTEASDGS--DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM 376
+T +TP + AT E +D ++ S +DD E++ YL +E+E K +W E
Sbjct: 365 ETVCG-------RTPSL-ATQEFNDKGVEEDLSYVDDDEINEYLLDEKEVEIKTKVWTEE 416
Query: 377 NREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA 436
N++YL Q K + ++ + PE + ++ +
Sbjct: 417 NKDYLTAQLEK-------ASRIDKDSNDKPESKKRKRKYKRNQLIS-------------- 455
Query: 437 EAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSVCLYS 481
PA + EA +ML +K++SSKINY+VL L + + C S
Sbjct: 456 ------PANSVGEAIEKMLAEKKISSKINYEVLRDLTETNACTTS 494
>gi|338753408|ref|NP_001229716.1| transcription factor IIIB 90 kDa subunit isoform 5 [Homo sapiens]
gi|332843232|ref|XP_510208.3| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
troglodytes]
gi|397470865|ref|XP_003807032.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1 [Pan
paniscus]
gi|119602317|gb|EAW81911.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_e
[Homo sapiens]
gi|194380648|dbj|BAG58477.1| unnamed protein product [Homo sapiens]
Length = 562
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 225/470 (47%), Gaps = 69/470 (14%)
Query: 33 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 151
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 152 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA-------- 203
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECD 175
Query: 204 -----------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 252
R K+L + ++ L ++S + + + +P A G S ++
Sbjct: 176 PPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDG 235
Query: 253 MT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE---- 306
T + L G + E E + A++ N RE + SPE
Sbjct: 236 STEDTASSLCG------EEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGR 289
Query: 307 PESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHN 362
P ++G + TA++ G D + + D + DG + S IDD E+D Y+ N
Sbjct: 290 PPALGSLLD-PLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRYILN 348
Query: 363 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 422
E E K +W N EYL EQ KEA A K EL
Sbjct: 349 ESEARVKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY---- 386
Query: 423 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 387 -----KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 431
>gi|402877360|ref|XP_003902397.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Papio anubis]
Length = 650
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 234/498 (46%), Gaps = 77/498 (15%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 66 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 123
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 124 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 178
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 179 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 238
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 239 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 298
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAE 282
+ + + +P A G S + +G A+ A + E E + A++
Sbjct: 299 DAIEIELENSRPKAKGGLASLAK---------DGSAEDTASSLCGEEDTEDEELEAAASH 349
Query: 283 ENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGVDAT 338
N RE + +PE P ++G + TA++ G D +
Sbjct: 350 LNKDLYRELLGGTPGSSEATGNPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQC 408
Query: 339 TEASDGSD----NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 394
++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A
Sbjct: 409 SDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKE 468
Query: 395 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 454
K EL KE + K++ + + A TA EA +M
Sbjct: 469 K------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKM 501
Query: 455 LTKKRLSSKINYDVLEKL 472
L +K++SSKINY VL L
Sbjct: 502 LEQKKISSKINYSVLRGL 519
>gi|390469562|ref|XP_003734142.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Callithrix jacchus]
Length = 681
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 151/497 (30%), Positives = 235/497 (47%), Gaps = 75/497 (15%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE-NSS 286
+ + ++ +P A G S ++ +E A + + ++A+A N
Sbjct: 326 DAIEIELESSRPKAKGGLASLAKDG-----SVEDTASSLCGEEDTEDEELEAAASHLNKD 380
Query: 287 FERE--SDSPFMSRVDKVQSPEPESIGVPKNCTT-----QTASNEGEGDHTKTPGVDATT 339
RE +P S + P+ G P + TA++ G D + ++
Sbjct: 381 LYRELLGATPGSSEA----AGSPQGSGRPPALQSLLDPLPTAASLGISDSIRECISSQSS 436
Query: 340 EASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
+ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 437 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 496
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
EL KE + K++ + + A TA EA +ML
Sbjct: 497 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 529
Query: 456 TKKRLSSKINYDVLEKL 472
+K++SSKINY VL L
Sbjct: 530 EQKKISSKINYSVLRGL 546
>gi|297592086|gb|ADI46871.1| BFR1f [Volvox carteri f. nagariensis]
Length = 835
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 54/299 (18%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
AL I S E + R Y +A+ R FT+GRR QV A CLY+ CR + +P++LIDFS++L
Sbjct: 98 ALRISPSSEAIEAGHRLYRLALQRGFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHL 157
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARD 130
++NVY LGAV+L + ++L + + + K +DPS+F+++F DRL LP KV TA
Sbjct: 158 SVNVYGLGAVFLDMLRLLRLEEHATFTKPIDPSLFMNRFVDRLRLPTQELRTKVGYTATR 217
Query: 131 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190
++ SMKRDW+ TGR+P+G+CGAAL+++A HG++ +K DI+ IVH+ T+ +R++E
Sbjct: 218 LVQSMKRDWMLTGRRPNGICGAALFLAAHIHGVEKTKMDIIAIVHVGWGTVERRVMELAE 277
Query: 191 TDSGSLTIEDFMARKK------------------ELHEGVAANLPNNGPKVS-------- 224
T LT+++ R K E + + PN +++
Sbjct: 278 TGGAELTLKEIEERDKASDLERVWNDGTNEKMLLEYERAASEDAPNRQRQLTWPASSSDA 337
Query: 225 ----------GMNEVL----------CKHKDTGKP-FACGLCRSCYEEF----MTISEG 258
G V+ C+H G P A G+CR C +E+ MT+ EG
Sbjct: 338 TVASGSAEGDGSAPVVMIQPDAAGRCCEHVRAGSPLLAHGMCRECLQEYLQVTMTVQEG 396
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 328 DHTKTPGVDATTEASDG--SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 385
D G D + DG SD+ SDI D EVDGYL EE ++ +W EMNR+++E Q
Sbjct: 592 DAAVAAGRDVVDKGGDGHSSDHLSDIHDDEVDGYLATNEEASVRRQLWLEMNRDWVELQE 651
Query: 386 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 445
AK+AA AA A +A+ +++ +K+A A+
Sbjct: 652 AKKAAEAAED-----------------------KRAGLARPKRKYLRKKA----EVPAAE 684
Query: 446 TALEATRRMLTKKRLSSKINYDVLEKLF 473
A ATR +L K+LS+KINY L LF
Sbjct: 685 DAAGATRNLLASKKLSNKINYGALADLF 712
>gi|383408305|gb|AFH27366.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
gi|384946668|gb|AFI36939.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 234/498 (46%), Gaps = 77/498 (15%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAE 282
+ + + +P A G S + +G A+ A + E E + A++
Sbjct: 326 DAIEIELENSRPKAKGGLASLAK---------DGSAEDTASSLCGEEDTEDEELEAAASH 376
Query: 283 ENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGVDAT 338
N RE + +PE P ++G + TA++ G D +
Sbjct: 377 LNKDLYRELLGGTPGSSEATGNPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQC 435
Query: 339 TEASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 394
++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A
Sbjct: 436 SDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKE 495
Query: 395 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 454
K EL KE + K++ + + A TA EA +M
Sbjct: 496 K------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKM 528
Query: 455 LTKKRLSSKINYDVLEKL 472
L +K++SSKINY VL L
Sbjct: 529 LEQKKISSKINYSVLRGL 546
>gi|297592169|gb|ADI46953.1| BFR1m [Volvox carteri f. nagariensis]
Length = 826
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 159/286 (55%), Gaps = 43/286 (15%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
AL I S E + R Y +A+ R FT+GRR QV A CLY+ CR + +P++LIDFS++L
Sbjct: 98 ALRISPSSEAIEAGHRLYRLALQRGFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHL 157
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARD 130
++NVY LGAV+L + ++L + + + K +DPS+F+++F DRL LP KV TA
Sbjct: 158 SVNVYGLGAVFLDMLRLLRLEEHATFTKPIDPSLFMNRFVDRLRLPTQELRTKVGYTATR 217
Query: 131 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190
++ SMKRDW+ TGR+P+G+CGAAL+++A HG++ +K DI+ IVH+ T+ +R++E
Sbjct: 218 LVQSMKRDWMLTGRRPNGICGAALFLAAHIHGVEKTKMDIIAIVHVGWGTVERRVMELAE 277
Query: 191 TDSGSLTIEDFMARKK-----------ELHEGVAANLPNNGPKVS--------------- 224
T LT+++ R K E + PN +++
Sbjct: 278 TGGAELTLKEIEERDKASDLEREKMLLEYERAAIEDAPNRQRQLTWPASSSDATVASGSA 337
Query: 225 ---GMNEVL----------CKHKDTGKP-FACGLCRSCYEEFMTIS 256
G V+ C+H G P A G+CR C +E++ ++
Sbjct: 338 EGDGSAPVVMMQPDATGRCCEHVRAGSPLLAHGMCRECLQEYLQVT 383
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 72/148 (48%), Gaps = 29/148 (19%)
Query: 328 DHTKTPGVDATTEASDG--SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 385
D G D + DG SD+ SDI D EVDGYL EE ++ +W EMNR+++E Q
Sbjct: 583 DAAVAAGRDVVDKGGDGHSSDHLSDIHDDEVDGYLATNEEASVRRQLWLEMNRDWVELQE 642
Query: 386 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 445
AK+AA AA A +A+ +++ +K+A A+
Sbjct: 643 AKKAAEAAED-----------------------KRAGLARPKRKYLRKKA----EVPAAE 675
Query: 446 TALEATRRMLTKKRLSSKINYDVLEKLF 473
A ATR +L K+LS+KINY L LF
Sbjct: 676 DAAGATRNLLASKKLSNKINYGALADLF 703
>gi|380812142|gb|AFE77946.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 234/498 (46%), Gaps = 77/498 (15%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAE 282
+ + + +P A G S + +G A+ A + E E + A++
Sbjct: 326 DAIEIELENSRPKAKGGLASLAK---------DGSAEDTASSLCGEEDTEDEELEAAASH 376
Query: 283 ENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGVDAT 338
N RE + +PE P ++G + TA++ G D +
Sbjct: 377 LNKDLYRELLGGTPGSSEATGNPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQC 435
Query: 339 TEASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 394
++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A
Sbjct: 436 SDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKE 495
Query: 395 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 454
K EL KE + K++ + + A TA EA +M
Sbjct: 496 K------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKM 528
Query: 455 LTKKRLSSKINYDVLEKL 472
L +K++SSKINY VL L
Sbjct: 529 LEQKKISSKINYSVLRGL 546
>gi|402877358|ref|XP_003902396.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Papio anubis]
Length = 677
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 234/498 (46%), Gaps = 77/498 (15%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQV-----AERERMVKASAE 282
+ + + +P A G S + +G A+ A + E E + A++
Sbjct: 326 DAIEIELENSRPKAKGGLASLAK---------DGSAEDTASSLCGEEDTEDEELEAAASH 376
Query: 283 ENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGVDAT 338
N RE + +PE P ++G + TA++ G D +
Sbjct: 377 LNKDLYRELLGGTPGSSEATGNPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQC 435
Query: 339 TEASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 394
++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA A
Sbjct: 436 SDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKE 495
Query: 395 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 454
K EL KE + K++ + + A TA EA +M
Sbjct: 496 K------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKM 528
Query: 455 LTKKRLSSKINYDVLEKL 472
L +K++SSKINY VL L
Sbjct: 529 LEQKKISSKINYSVLRGL 546
>gi|432940985|ref|XP_004082772.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 684
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 148/505 (29%), Positives = 243/505 (48%), Gaps = 71/505 (14%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ + + L + + + A FY +A+ + T G R+ V A+CLYL CR +
Sbjct: 86 LQRAKQNINTLGHQLQMNQ--HCLDTAFNFYKMALNKRLTNGHRSSHVIAACLYLVCRTE 143
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG- 119
P +L+D S+ L +NVY LG V+L L + L I + +DP +++ +F L G
Sbjct: 144 GTPHMLLDLSDVLQVNVYVLGKVFLHLAKELCINAPA-----IDPCLYIPRFAQMLEFGE 198
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
N V TA ++ MKRDW+ TGR+PSGLCGAAL VSA H + ++V +V +CE+
Sbjct: 199 KNHDVSMTAMRLVQRMKRDWMHTGRRPSGLCGAALLVSAHMHDFCRTVKEVVNVVKVCES 258
Query: 180 TLMKRLIEFENTDSGSLTIEDFM-------------------ARKKELHEGVAANLPNNG 220
TL KRL EFE+T + LT+E+FM + ++L + + +P+
Sbjct: 259 TLRKRLTEFEDTPTSKLTVEEFMRVDLDEECDPPSYTAGLKKTKTQQLEKQLMEKMPDVE 318
Query: 221 PKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKAS 280
++ G + + ++ +P G+ + Y SE + ++ + ++A
Sbjct: 319 DEIKGYQDEIDAELESLRPKLKGV-YAAYVNRDLSSEDIRSMLSQQDDNQSDEDEELRAV 377
Query: 281 AEENSSFERESDSPFMSRVDKVQSPEPE-----SIGVPKNCTTQTASNEGEGDHTKTPGV 335
A F+++ D+ + + K++ PE + +P+ AS G T G+
Sbjct: 378 ARH---FDKDLDTLTVEALIKLEQKTPEEENECGMKIPERVGPSLASILGTMPSAATLGL 434
Query: 336 DATT--------EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 387
+ E DG + S IDD E++ YL +E E K +W N +YL+EQ K
Sbjct: 435 PESINKCTGEERENGDGELDLSGIDDSEIELYLLSESEIKIKTALWMAENSDYLKEQKEK 494
Query: 388 EAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTA 447
EA A K EL KEK+ K + + ++ A TA
Sbjct: 495 EAKIAKEK------------------ELGIY---------KEKKPKSSGKKRSQIRASTA 527
Query: 448 LEATRRMLTKKRLSSKINYDVLEKL 472
EA +ML +K++S+KINYDVL+ L
Sbjct: 528 DEAIGKMLEQKKISTKINYDVLKDL 552
>gi|927598|gb|AAC50170.1| TFIIIB 90 kDa subunit [Homo sapiens]
gi|1581601|prf||2116442A transcription factor IIIB
Length = 675
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 148/480 (30%), Positives = 218/480 (45%), Gaps = 85/480 (17%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+ S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLVLSDLLQVNVYVLGKTFLLLAR 172
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRGPSG 227
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 208
LCG AL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM K +L
Sbjct: 228 LCGGALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM--KIDL 285
Query: 209 HEGVAANLPNNGP---KVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTI----SEGLEG 261
E G ++ + +VL K + + S Y++ + I S G
Sbjct: 286 EEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEI-----SSYQDAIEIELENSRPKRG 340
Query: 262 GADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESI-GVPKNCTTQT 320
G P + R+ + Q PE I G P C Q
Sbjct: 341 GLQPGKRWLHRGHRV---------QLVWRGGHRGRGAGSRGQPPEQRLIPGAPWWCPRQL 391
Query: 321 ASNEGEGDHTKTPGVDA---------------------TTEASDGSD-------NFSDID 352
S+ +TP + + ++++SD D + S ID
Sbjct: 392 GSSRKPRVGRQTPALGSLLDPLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGID 451
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 452 DLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK----------------- 494
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
EL KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 495 -ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 544
>gi|119602312|gb|EAW81906.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_a
[Homo sapiens]
Length = 699
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 154/517 (29%), Positives = 235/517 (45%), Gaps = 93/517 (17%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENS 285
+ + + +P A G S ++ T + L G + E E + A++ N
Sbjct: 326 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG------EEDTEDEELEAAASHLNK 379
Query: 286 SFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDA 337
RE + SPE P ++G + TA++ G D + + D
Sbjct: 380 DLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDP 438
Query: 338 TTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIWEE 375
+ DG + S IDD E+D Y+ NE E K +W
Sbjct: 439 KDASGDGELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESEARVKAELWMR 498
Query: 376 MNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA 435
N EYL EQ KEA A K EL KE + K++
Sbjct: 499 ENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPKKS 531
Query: 436 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
+ + A TA EA +ML +K++SSKINY VL L
Sbjct: 532 CKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 568
>gi|374107864|gb|AEY96771.1| FAEL213Wp [Ashbya gossypii FDAG1]
Length = 571
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 246/498 (49%), Gaps = 49/498 (9%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++ + +AL I E + A ++Y +A++ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 89 LQAVSHALQIPEY--VREAAFQWYQLALSNNFVQGRRSQNVIAACLYVACRKEKTHHMLI 146
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L++ +VL+I L DPS+F+ F ++L G K KV
Sbjct: 147 DFSSRLQVSVYSIGATFLKMVKVLHIVK----LPLADPSLFIQHFAEKLDLGDKKIKVVK 202
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + +M +DW+ GR+P+G+ GA L ++ + L+ + S++V + H+ E TL +RL
Sbjct: 203 DAVKLAQTMSKDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEVVAVSHVAEETLQQRLN 262
Query: 187 EFENTDSGSLTIEDFMA-----------------RKKELHE------GVAANLPNNGPKV 223
EF+NT SG+L+I+ F R+ L E G A +L + +
Sbjct: 263 EFKNTKSGNLSIKQFRDTSTEEEVQQSDSKPPSFRRNRLKETKLKEKGPAEHLETSDQAL 322
Query: 224 SG---MNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL-EGGADPPAFQVAERERMVKA 279
+ +++VL + T K L + +S+ +G +D P ++ +
Sbjct: 323 ARNPILSQVLGGQEVTSKEVLFYLKQISERRERALSKRRDQGNSDSPDAHSQAGDKRSRG 382
Query: 280 SAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATT 339
A S +E + SR+D S E S G + +T H +
Sbjct: 383 DA-SGSDYEDQDG----SRLDSDASSE-HSQGQIDGYSLETDPYRPRNLHLLPTSESLLS 436
Query: 340 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAAK 395
+ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K EA A+
Sbjct: 437 KVSDDPENLEDVDDEELEAHILDEEASKLKERIWIGINGEYLLEQESKRLKLEADLASGN 496
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
+L+ + A+ L A AAA + Q AEA SG TA E+ + ML
Sbjct: 497 TSLKKKRSSKKRKTDASNLLPEALAAADPTGIQPALQ--VAEA--SGDLTTA-ESVKNML 551
Query: 456 TKKRLSSKINYDVLEKLF 473
K S KINYD ++ LF
Sbjct: 552 QKTSFSKKINYDAIDGLF 569
>gi|45190394|ref|NP_984648.1| AEL213Wp [Ashbya gossypii ATCC 10895]
gi|44983290|gb|AAS52472.1| AEL213Wp [Ashbya gossypii ATCC 10895]
Length = 571
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 245/498 (49%), Gaps = 49/498 (9%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++ + +AL I E + A ++Y +A++ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 89 LQAVSHALQIPEY--VREAAFQWYQLALSNNFVQGRRSQNVIAACLYVACRKEKTHHMLI 146
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L++ +VL+I L DPS+F+ F ++L G K KV
Sbjct: 147 DFSSRLQVSVYSIGATFLKMVKVLHIVK----LPLADPSLFIQHFAEKLDLGDKKIKVVK 202
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + +M +DW+ GR+P+G+ GA L ++ + L+ + S++V + H+ E TL +RL
Sbjct: 203 DAVKLAQTMSKDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEVVAVSHVAEETLQQRLN 262
Query: 187 EFENTDSGSLTIEDFMA-----------------RKKELHE------GVAANLPNNGPKV 223
EF+NT SG+L+I+ F R+ L E G A +L + +
Sbjct: 263 EFKNTKSGNLSIKQFRDTSTEEEVQQSDSKPPSFRRNRLKETKLKEKGPAEHLETSDQAL 322
Query: 224 SG---MNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL-EGGADPPAFQVAERERMVKA 279
+ +++VL + T K L + +S+ +G D P ++ +
Sbjct: 323 ARNPILSQVLGGQEVTSKEVLFYLKQISERRERALSKRRDQGNNDSPDAHSQAGDKRSRG 382
Query: 280 SAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATT 339
A S +E + SR+D S E S G + +T H +
Sbjct: 383 DA-SGSDYEDQDG----SRLDSDASSE-HSQGQIDGYSLETDPYRPRNLHLLPTSESLLS 436
Query: 340 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAAK 395
+ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K EA A+
Sbjct: 437 KVSDDPENLEDVDDEELEAHILDEEASKLKERIWIGINGEYLLEQESKRLKLEADLASGN 496
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
+L+ + A+ L A AAA + Q AEA SG TA E+ + ML
Sbjct: 497 TSLKKKRSSKKRKTDASNLLPEALAAADPTGIQPALQ--VAEA--SGDLTTA-ESVKNML 551
Query: 456 TKKRLSSKINYDVLEKLF 473
K S KINYD ++ LF
Sbjct: 552 QKTSFSKKINYDAIDGLF 569
>gi|338753402|ref|NP_001229715.1| transcription factor IIIB 90 kDa subunit isoform 4 [Homo sapiens]
gi|332843234|ref|XP_003314588.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1 [Pan
troglodytes]
gi|397470871|ref|XP_003807035.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 4 [Pan
paniscus]
Length = 584
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 225/492 (45%), Gaps = 91/492 (18%)
Query: 33 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 151
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 152 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA-------- 203
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECD 175
Query: 204 -----------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 252
R K+L + ++ L ++S + + + +P A G S ++
Sbjct: 176 PPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDG 235
Query: 253 MT--ISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE---- 306
T + L G + E E + A++ N RE + SPE
Sbjct: 236 STEDTASSLCG------EEDTEDEELEAAASHLNKDLYRELLGGAPGSSEAAGSPEWGGR 289
Query: 307 PESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVD----- 357
P ++G + TA++ G D + + D + DG + S IDD E+D
Sbjct: 290 PPALGSLLD-PLPTAASLGISDSIRECISSQSSDPKDASGDGELDLSGIDDLEIDRRDLS 348
Query: 358 -----------------GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 400
Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 349 MPRCAKAKSQPHFPVLAQYILNESEARVKAELWMRENAEYLREQREKEARIAKEK----- 403
Query: 401 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 460
EL KE + K++ + + A TA EA +ML +K++
Sbjct: 404 -------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKI 441
Query: 461 SSKINYDVLEKL 472
SSKINY VL L
Sbjct: 442 SSKINYSVLRGL 453
>gi|383865567|ref|XP_003708244.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Megachile
rotundata]
Length = 656
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/467 (29%), Positives = 218/467 (46%), Gaps = 69/467 (14%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ + FY +A+ R+ T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRHLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 142
YL+ Q L I + VDP +++ +F ++L G +V TA ++ MKRD I +
Sbjct: 166 YLRFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHS 220
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFM 280
Query: 203 ---------------ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 247
ARKK+ L N +++ + + K D G R
Sbjct: 281 TVDLEEEQDPPAFKAARKKDRER--LQKLENIDTEINELQAEIDKQLDEQ---TIGKTRK 335
Query: 248 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE--NSSFERESDSPFMSRVDKVQSP 305
D + + ER V+ S + S E + D P D +
Sbjct: 336 --------------RKDAAYLEREDTERFVRESNLDVIKSYVENDVDDPDSDLQDSNDTS 381
Query: 306 EPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEE 365
G+ N + + + ++ ++AT E + G + +D+DD E+D Y+ +E+E
Sbjct: 382 NRLITGLGPNIASMGLISANDRENETNGQMNATFENNSGEIDIADLDDEELDSYIMSEKE 441
Query: 366 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 425
+K +W ++N EYL +Q KE +
Sbjct: 442 AQFKHNLWNKVNAEYLNQQKEKEEKRQKE---------------------KEEGKPEKKR 480
Query: 426 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
R K+ K PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 481 RRTTKRNKTQT------PANTAGEAIEKMLQEKKISSKINYEVLKSL 521
>gi|221040424|dbj|BAH11919.1| unnamed protein product [Homo sapiens]
Length = 584
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 155/522 (29%), Positives = 222/522 (42%), Gaps = 151/522 (28%)
Query: 33 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92
+AV+R+ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 151
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 152 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA-------- 203
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECD 175
Query: 204 -----------RKKEL------------------HEGVAANLPNNGPKVSGMNEVLCKH- 233
R K+L + + L N+ PK G L K
Sbjct: 176 PPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDG 235
Query: 234 --KDTGKPFACG---------------LCRSCYEEFMTISEGLEGGADPPAFQVAERERM 276
+DT CG L + Y E + GGA
Sbjct: 236 STEDTASSL-CGEEDTEDEELEAAASHLNKDLYRELL-------GGA------------- 274
Query: 277 VKASAEENSSFERESDSPFM-SRVDKVQSPEPESIGVP---KNCTTQTASNEGEGDHTKT 332
S+E S E P + S +D + P S+G+ + C + +SN +
Sbjct: 275 -PGSSEAAGSPEWGGRPPALGSLLDPL--PTAASLGISDSIRECISSQSSNPKDA----- 326
Query: 333 PGVDATTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKK 370
+ DG + S IDD E+D Y+ NE E K
Sbjct: 327 --------SGDGELDLSGIDDLEIDRRDLSMPRCAKAKSQPHFPVLAQYILNESEARVKA 378
Query: 371 IIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEK 430
+W N EYL EQ KEA A K EL KE
Sbjct: 379 ELWMRENAEYLREQREKEARIAKEK------------------ELGIY---------KEH 411
Query: 431 QQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
+ K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 412 KPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 453
>gi|340722869|ref|XP_003399823.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
terrestris]
Length = 659
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 143/479 (29%), Positives = 225/479 (46%), Gaps = 92/479 (19%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ + FY +A+ R T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRQLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 142
YL+ Q L I + VDP +++ +F ++L G +V TA ++ MKRD I +
Sbjct: 166 YLRFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHS 220
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFM 280
Query: 203 ---------------ARKKELHEGVAANLPNNGPKVSG-MNEVLCKHKDTGKPFACGLCR 246
ARKK+ N+ ++ +++ L +H+ GK
Sbjct: 281 TVDLEEEQDPPAFKAARKKDRERLQRLNIDTEINELQAEIDKQLEEHR-LGK-------- 331
Query: 247 SCYEEFMTISEGLEGGADPPAFQVAERERMVKASA-------------EENSSFERESDS 293
++ D + + A+ +R ++ S + +S F+ +
Sbjct: 332 ------------MKKRKDAASIERADTDRFIRESNLDVIKHYVGNDVDDPDSDFQDSEMN 379
Query: 294 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 353
R+ P S+G+ +T NE TK P V+ E G + +D+DD
Sbjct: 380 NINDRLITGLGPNIASMGL---ISTNDRENE-----TKDP-VNTNFENDTGEIDVADLDD 430
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
E+D Y+ +E+E +K +W ++N EYL +Q KE
Sbjct: 431 EELDSYIMSEKEAQFKHNLWNKVNAEYLNQQKEKEERRQKE------------------- 471
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
+ R K+ KN PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 472 --KEEGKPEKKRRRTTKRN------KNQVPANTAGEAIEKMLQEKKISSKINYEVLKSL 522
>gi|410916049|ref|XP_003971499.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Takifugu
rubripes]
Length = 690
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 145/489 (29%), Positives = 222/489 (45%), Gaps = 93/489 (19%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ + V+++ T+GR+TE V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMVVSKHLTRGRKTEHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLAR 172
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G +V TA ++ MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHMLEFGVKTHEVSMTALRLVQRMKRDWMHTGRRPSG 227
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM------ 202
LCGAAL V+A H + + D++ +V +C+ TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHKFRRTVKDVISVVKVCQTTLRKRLTEFEDTPTSQLTIDEFMKVDLEQ 287
Query: 203 -----------------------ARKKELHEG--------VAANLPNNGPKVSGMNEVLC 231
RK + EG + L + PK+ G+
Sbjct: 288 ECDPPSFTAGQHKVKMQQLEQELTRKLDDVEGEISCYKDEIETELEKSRPKLRGIYNTFT 347
Query: 232 KHKDTGKPFACGLCRSCYEEFMTISEGLEGGA-----DPPAFQVAERERMVKAS--AEEN 284
K D K S + M + + ++ A D + E+E VK + E
Sbjct: 348 KESDPAKAEVM----SVTSDPMELEDEVQAAAQKLTQDFLCHVIQEQEGWVKKAEDGEHK 403
Query: 285 SSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDG 344
+E+ V V+ P +G+ + AS + + D ++ + E G
Sbjct: 404 EDLLKET-------VKSVRQGPP--LGIILGNLSSAASLDLQQDLEES-ATELEDEQLKG 453
Query: 345 SD-NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 403
+ + IDD E++ Y+ N++E K +W N EYL+EQ KE K + +YK
Sbjct: 454 EELDLDGIDDQEIEKYILNDKEVEVKTELWMRQNAEYLKEQKEKEERIQKEKE--QGTYK 511
Query: 404 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSK 463
+ + R E A TA EA ML KK++SSK
Sbjct: 512 ------------EKSKKPKKKRERME--------------ASTAGEAIEMMLEKKKISSK 545
Query: 464 INYDVLEKL 472
INYDVL L
Sbjct: 546 INYDVLRHL 554
>gi|328785533|ref|XP_623775.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform 2
[Apis mellifera]
Length = 661
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 225/477 (47%), Gaps = 87/477 (18%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ + FY +A+ R T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRQLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 142
YL+ Q L I + VDP +++ +F ++L G +V TA I+ MKRD I +
Sbjct: 166 YLKFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRIVQRMKRDSIHS 220
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPTDIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFM 280
Query: 203 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 262
E + P A + R E + E ++
Sbjct: 281 TVDLE---------------------------EEQDPPAFKIARKKDRERLQRLENIDTE 313
Query: 263 ADPPAFQV---AERERMVKASAEENSS-FERESDSPFM--SRVDKVQSPEPESIGVP--- 313
+ ++ E R+ KA ++++ E+E F+ S +D +++ I P
Sbjct: 314 INELQAEIDKQLEDHRLGKARKRKDAAIIEKEDTDRFIRESNLDVIKNYVENDIDDPDNE 373
Query: 314 -KNCTTQTASNE---GEGDHTKTPGVDATT--------------EASDGSDNFSDIDDFE 355
+N + A+N G G + + G+ +T E + G + +D+DD E
Sbjct: 374 IQNSESSNANNRLIIGLGPNIASMGLISTNNRENETKESVNINFENNSGEIDVADLDDEE 433
Query: 356 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 415
+D Y+ +E+E +K +W ++N EYL +Q +
Sbjct: 434 LDSYIMSEKEAQFKHNLWNKVNAEYL---------------------------IQQKERE 466
Query: 416 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
++K+++ K+ PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 467 EKRQKEKEEGKPEKKRRRTTKRNKSQAPANTAGEAIEKMLQEKKISSKINYEVLKSL 523
>gi|390358626|ref|XP_794011.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Strongylocentrotus purpuratus]
Length = 766
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 120/177 (67%), Gaps = 6/177 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
+A F+ +AV + T+GR+T + A+CLYL CR +S P +L+D S+ L +NVY LG YL
Sbjct: 109 MAYNFFKMAVQKKLTRGRKTMHIVAACLYLVCRLESTPHMLLDLSDLLQVNVYVLGKTYL 168
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGR 144
+LCQ L+I NV +DP +F+ +F +L VC+TA +++ MKRDW+ TGR
Sbjct: 169 KLCQELHI----NV-PAIDPCLFIQRFAHKLEFDERTDVVCETALRLVSRMKRDWMHTGR 223
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
+PSGLCGAAL V+A H ++ D++K+V +C+ATL KRL EFE T SG LTI++F
Sbjct: 224 RPSGLCGAALLVAARMHNFSRTQKDVIKVVKVCDATLRKRLSEFEETPSGKLTIDEF 280
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 37/180 (20%)
Query: 293 SPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 352
S S DK P P S+G ++ E K+P D DG + + ID
Sbjct: 471 SAVWSDEDKGLGPSPLSLGF------ESIIKEAAIPEEKSPDSD------DGELDLTGID 518
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
+ E++ ++ +E+E K +W + N EY++ KE + L GL+
Sbjct: 519 EKEMELFILSEKEVMIKTTLWMKENGEYMKLMEEKELRLRKERELL---------GLKPD 569
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
Q + A TA EA ++L +K++SSKINYDVL L
Sbjct: 570 QPKKKRKNNKKPPIQ----------------ANTAGEAIEKLLVEKKISSKINYDVLRDL 613
>gi|449015338|dbj|BAM78740.1| RNA polymerase III transcription factor IIIB [Cyanidioschyzon
merolae strain 10D]
Length = 953
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 139/248 (56%), Gaps = 26/248 (10%)
Query: 23 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 82
V A R + +AV NF +GRRT+ V A+ LY+ CR++ P LLIDFS+ L INVY LG
Sbjct: 352 FVDAAHRLFTLAVQHNFVQGRRTQTVAAAALYIVCRREKTPHLLIDFSDTLRINVYVLGH 411
Query: 83 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWIT 141
YL+LC+VL++A L +DPS ++H+F RL G + V TA +++ MKRDWI
Sbjct: 412 TYLKLCRVLHLA-----LPIIDPSFYIHRFASRLDLGEKQNAVAQTALRLISRMKRDWIH 466
Query: 142 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
TGR+P+GLCGAAL ++A HG + S+ +I +V + + T+ +RL E E T +G+LT +
Sbjct: 467 TGRRPAGLCGAALLIAARMHGFRRSQREIGAVVRVGDMTIRQRLCEIEETPTGTLTGREL 526
Query: 202 MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 261
A SG+ E + + T P A S + L+
Sbjct: 527 AAE-------------------SGLIESVAEEDTTEAPLAATADTSANAVSPEAVDTLD- 566
Query: 262 GADPPAFQ 269
G DPPAF+
Sbjct: 567 GCDPPAFR 574
>gi|156341179|ref|XP_001620678.1| hypothetical protein NEMVEDRAFT_v1g147404 [Nematostella vectensis]
gi|156205891|gb|EDO28578.1| predicted protein [Nematostella vectensis]
Length = 522
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 151/475 (31%), Positives = 221/475 (46%), Gaps = 85/475 (17%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A FY +AV + T+GRRT V A+CLYL CR + P +L+DFS+ L I+V+ LG
Sbjct: 105 IDTAYNFYKLAVNKRLTRGRRTAHVVAACLYLVCRTERTPHMLLDFSDILQIDVFTLGRA 164
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 142
YL+L Q LYI L +DP +++H+F +L G + V TA +++ MKRDWI
Sbjct: 165 YLKLAQELYIN-----LPAIDPCLYIHRFAHKLELGEKEHDVAVTALRLVSRMKRDWIHH 219
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF- 201
GR+PSGLCGAAL V++ H S ++VK+V I + T+ KRL EF++T S LTI++F
Sbjct: 220 GRRPSGLCGAALLVASRLHSFNRSVREVVKVVRISDTTIRKRLGEFKDTPSSQLTIDEFH 279
Query: 202 --------------MARKKELHEGVAANLPNNGPKVS----------GMNEVLCKHKDTG 237
ARKK + P +V G+ + + ++T
Sbjct: 280 KIDLEEEQDPPCFTHARKKAKQQAEDVVNPEITQEVEKFRTEIDNILGIRQEIRNQENT- 338
Query: 238 KPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMS 297
E+ M+ S+ GG P + VA V AS +S + +
Sbjct: 339 ------------EKTMSPSDQRAGGESPAS--VACNSVDVAASVSGSS-----TRGDCFA 379
Query: 298 RVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVD 357
D Q E ++I K C ++ + H + P + E S + + +DD E+D
Sbjct: 380 SYDMTQDEEGKAILFQKLCCKTSSMH-----HHRFPNI--VREESGEELDLTGLDDVELD 432
Query: 358 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 417
L E+E K IW E N+EYLE+ KE A + Q +
Sbjct: 433 KCLLTEDEIKVKTKIWMEENKEYLEKMKEKEEQEAQDR----------------EQGIVK 476
Query: 418 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
K KQ PA TA EA +ML ++++SSKINY+VL L
Sbjct: 477 PEKKKRKYKSKNKQ-----------PASTAGEAIEKMLVERKISSKINYEVLRDL 520
>gi|380022853|ref|XP_003695250.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Apis
florea]
Length = 631
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/473 (28%), Positives = 218/473 (46%), Gaps = 83/473 (17%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ + FY +A+ R T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRQLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 142
YL+ Q L I + VDP +++ +F ++L G +V TA I+ MKRD I +
Sbjct: 166 YLKFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRIVQRMKRDSIHS 220
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+E+FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTLEEFM 280
Query: 203 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 262
E + P A + R E + E ++
Sbjct: 281 TVDLE---------------------------EEQDPPAFKIARKKDRERLQRLENIDTE 313
Query: 263 ADPPAFQVAE--------RERMVKASAEENSSFERESDSPFMSRV---------DKVQSP 305
+ ++ + + R K E+ F RES+ + +++Q
Sbjct: 314 INELQAEIDKQLEDHRLGKTRKRKDEKEDTDRFIRESNLDVIKNYVENDIDDPDNEIQDS 373
Query: 306 EPES------IGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGY 359
E + IG+ N + + ++ V+ E + G + +D+DD E+D Y
Sbjct: 374 ESNNANNRLIIGLGPNIASMGLISANNRENETKESVNINFENNSGEIDVADLDDEELDSY 433
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 419
+ +E+E +K +W ++N EYL +Q ++
Sbjct: 434 IMSEKEAQFKHNLWNKVNAEYL---------------------------IQQKEKEEKRQ 466
Query: 420 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
++K+++ K+ PA TA EA +ML +K++SSKINY+VL+ L
Sbjct: 467 KEKEEGKPEKKRRRTTKRNKSQAPANTAGEAIEKMLQEKKISSKINYEVLKSL 519
>gi|146414780|ref|XP_001483360.1| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 238/485 (49%), Gaps = 58/485 (11%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++++ A+ I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ P +LI
Sbjct: 91 IKRIATAMRI--PDYISDAAAEWFRLALTLNFVQGRRSQNVLAACLYVACRKEKTPHMLI 148
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
DFS+ L I+VY LGA +L++ + L+I + L DPS+F+ F +RL G KV
Sbjct: 149 DFSSRLQISVYSLGATFLKMVRALHITN----LPLADPSLFIQHFAERLDFGDLLTKVIK 204
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 205 DAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETLQRRLN 264
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVAANLPN---NGPKVSGMNEVLCKHKDTGKPFACG 243
EF+ T SG+L++ DF + L + AN P+ N + + + L + + T + G
Sbjct: 265 EFKKTSSGALSVADF----RLLEQMDPANPPSFNKNREQELRIAQELQQAQST-ETLLGG 319
Query: 244 LCRSCYEE-----FMTISEGLEGGADPPAFQVAERERMVKASAE--ENSSFERESDSPFM 296
S E TI + + + Q+ +R+V+A + +NS + SD
Sbjct: 320 ETSSAKEAHKQKLLKTILKDCDLSEQEISTQL---QRIVQAQQKSLQNSMYTTPSDRQGD 376
Query: 297 SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEV 356
+ +D+V + P+N + E D +T + T +F+D+DD E+
Sbjct: 377 ASIDRV------DLDKPRNLSKNLPRTE---DILQTVSLHPT--------DFTDLDDEEL 419
Query: 357 DGYLHNEEEKHYKKIIWEEMNREYL---EEQAAKEAAAAAAKAALEASYKNCPE--GLQA 411
+ EEE K+ +W +N ++L E + KE A + K P+ G++
Sbjct: 420 SLFKLTEEEHRLKERVWTGLNHDFLLAQERKRLKEEADELTGNTSGSKRKRKPKASGIED 479
Query: 412 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 471
E+ A A ++G TA ++ +RML+KK S KINY L
Sbjct: 480 LNEMGMGEALA-----------NIGVDDSTGEPLTAADSAKRMLSKKSFSKKINYATLGD 528
Query: 472 LFDDS 476
LF ++
Sbjct: 529 LFGET 533
>gi|190347671|gb|EDK39991.2| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/488 (28%), Positives = 230/488 (47%), Gaps = 64/488 (13%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++++ A+ I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ P +LI
Sbjct: 91 IKRIATAMRI--PDYISDAAAEWFRLALTLNFVQGRRSQNVLAACLYVACRKEKTPHMLI 148
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
DFS+ L I+VY LGA +L++ + L+I + L DPS+F+ F +RL G KV
Sbjct: 149 DFSSRLQISVYSLGATFLKMVRALHITN----LPLADPSLFIQHFAERLDFGDLLTKVIK 204
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 205 DAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETLQRRLN 264
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCK------HKDTGKPF 240
EF+ T SG+L++ DF R E + P N P + E + + +
Sbjct: 265 EFKKTSSGALSVADF--RSSEQMD------PANPPSFNKNREQELRIAQELQQAQSTETL 316
Query: 241 ACGLCRSCYEE-----FMTISEGLEGGADPPAFQVAERERMVKASAE--ENSSFERESDS 293
G S E TI + + + Q+ +R+V+A + +NS + SD
Sbjct: 317 LGGETSSAKEAHKQKLLKTILKDCDLSEQEISTQL---QRIVQAQQKSLQNSMYTTPSDR 373
Query: 294 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 353
+ +D+V + P+N + E D S +F+D+DD
Sbjct: 374 QGDASIDRV------DLDKPRNLSKNLPRTE-----------DILQTVSSHPTDFTDLDD 416
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYL---EEQAAKEAAAAAAKAALEASYKNCPE--G 408
E+ + EEE K+ +W +N ++L E + KE A + K P+ G
Sbjct: 417 EELSLFKLTEEEHRLKERVWTGLNHDFLLAQERKRLKEEADELTGNTSGSKRKRKPKASG 476
Query: 409 LQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 468
++ E+ A A ++G TA ++ +RML+KK S KINY
Sbjct: 477 IEDLNEMGMGEALA-----------NIGVDDSTGEPLTAADSAKRMLSKKSFSKKINYAT 525
Query: 469 LEKLFDDS 476
L LF ++
Sbjct: 526 LGDLFGET 533
>gi|348671349|gb|EGZ11170.1| hypothetical protein PHYSODRAFT_347658 [Phytophthora sojae]
Length = 672
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 124/191 (64%), Gaps = 8/191 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+RQ+ L +G D V A R + +A+ RNFT GR+T+ V A+CLY+ CR++ P LLI
Sbjct: 92 IRQIAGMLRLG--DHYVDSAFRLFALALQRNFTHGRKTQTVIAACLYIVCRRERSPHLLI 149
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L INVY LG V+L+ C++L I L +DPS+++H+F +L G +
Sbjct: 150 DFSDKLQINVYVLGGVFLKFCKLLQIH-----LPLIDPSLYIHRFASQLNFAGKTHSIAT 204
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA ++A+MKRDWI TGR+PSG+CGAAL ++A + + S D++ +V+I E TL +RL
Sbjct: 205 TALRLVATMKRDWIETGRRPSGICGAALLIAARSQSVMCSLHDVMDVVNIGERTLKQRLY 264
Query: 187 EFENTDSGSLT 197
EF T + LT
Sbjct: 265 EFSLTPTAQLT 275
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 334 GVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAA 393
G D +A + D FSD+DD E++ L EE KK++WE+MN+++++EQ K +
Sbjct: 560 GDDEKGDAEEAVDTFSDLDDDEINSLLLTREEAEKKKLLWEKMNKDFIQEQEQKRLLGLS 619
Query: 394 AKAA 397
A A
Sbjct: 620 APDA 623
>gi|301095599|ref|XP_002896899.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
gi|262108546|gb|EEY66598.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
Length = 589
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 124/191 (64%), Gaps = 8/191 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+RQ+ L +G D V A R + +A+ RNFT GR+T+ V A+CLY+ CR++ P LLI
Sbjct: 92 IRQIAGMLRLG--DHYVDSAFRLFALALQRNFTHGRKTQTVIAACLYIVCRRERSPHLLI 149
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L INVY LG V+L+ C++L I L +DPS+++H+F +L G +
Sbjct: 150 DFSDKLQINVYVLGGVFLKFCKLLQIH-----LPLIDPSLYIHRFASQLNFAGKTHSIAT 204
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA ++A+MKRDWI TGR+PSG+CGAAL ++A + + S D++ +V+I E TL +RL
Sbjct: 205 TALRLVATMKRDWIETGRRPSGICGAALLIAARSQSVMCSLHDVMDVVNIGERTLKQRLY 264
Query: 187 EFENTDSGSLT 197
EF T + LT
Sbjct: 265 EFSLTPTAQLT 275
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 325 GEGDHTKTPGVDATTEA-------------SDGS-DNFSDIDDFEVDGYLHNEEEKHYKK 370
G+ +H+ +P A EA +D + D FSD+DD E++ L EE KK
Sbjct: 454 GDTEHSTSPTTSADDEAVSTVIRRRRSRDLADSTVDTFSDLDDDEINSLLLTREEAEKKK 513
Query: 371 IIWEEMNREYLEEQAAKEAAAAAAKAA 397
++WE+MN++Y++EQ K +A A
Sbjct: 514 LLWEKMNKDYIQEQEQKRLLGLSAPDA 540
>gi|198427438|ref|XP_002130866.1| PREDICTED: similar to LOC494758 protein [Ciona intestinalis]
Length = 657
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 140/501 (27%), Positives = 229/501 (45%), Gaps = 71/501 (14%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K + +R M LN+ V A F+ +A+++ ++GRR + A+CLY+ CR +
Sbjct: 83 LDKGKNQIRDMAAQLNLNR--HCVDTAFNFFKMAISKRLSRGRRITHIVAACLYMTCRTE 140
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P LL+DFS+ +NV+ LG V+L L + L+I L +DP +++ +F RL
Sbjct: 141 GTPHLLLDFSDITQVNVFILGKVFLLLAKELHIN-----LPVLDPCMYITRFAHRLDFNE 195
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V A +++ MKRDWI TGR+PSGLCGAAL V+A HG +D+VK+ I
Sbjct: 196 KTHEVSVAAMRLVSRMKRDWIHTGRRPSGLCGAALLVAARLHGFNCDLNDVVKVARIGHD 255
Query: 180 TLMKRLIEFENTDSGSLTIEDFMA----------------RKKELH--EGVAANLPNNGP 221
T+ KRL EFE+T S LTI +FM K ++H E A+L N
Sbjct: 256 TIRKRLNEFESTPSSKLTINEFMKIDLEAEHDPPAFINSRIKAKIHQLEAEGASLENEIG 315
Query: 222 KVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASA 281
K+S + + + + + + + E + DP R +
Sbjct: 316 KLSNVIDDKLTQQSSRPASPANVSKPSNSSVNRVPEHVSNDDDPEL-----RAAATFMHS 370
Query: 282 EENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHT----KTPGVDA 337
E + + SP K P+P G T TA++ G TP
Sbjct: 371 EHPEAVAQSLLSP------KRGLPQPTRQGFRSTGPTPTAASLGLRTSIDECLSTPSDSD 424
Query: 338 TTEASD---GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 394
+D G + + IDD E+D L + E K+ IW + E+++E
Sbjct: 425 RLHENDNNNGELDLTGIDDNEIDKLLLSPHESEIKQRIWMKEYGEFVKE----------- 473
Query: 395 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 454
L+ +E+ K+R+ ++ K+ + G ++TA EA ++
Sbjct: 474 --------------LEEKREIKRIENE--KKNRRPRKFKQVRYKEYYGESRTAGEAIEKL 517
Query: 455 LTKKRLSSKINYDVLEKLFDD 475
++++RLS+KINY+ L+K +D
Sbjct: 518 VSRQRLSNKINYEALKKATED 538
>gi|350403589|ref|XP_003486845.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
impatiens]
Length = 659
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 145/502 (28%), Positives = 216/502 (43%), Gaps = 138/502 (27%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ + FY +A+ R T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSMNFYKMALNRQLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 142
YL+ Q L I + VDP +++ +F ++L G +V TA ++ MKRD I +
Sbjct: 166 YLRFTQALCIN-----IPSVDPCLYIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSIHS 220
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGAAL ++A H S +DI+KIV + E+TL KRLIEF +T S +LT+
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPADIIKIVKVHESTLRKRLIEFGDTPSSALTL---- 276
Query: 203 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 262
EEFMT+ LE
Sbjct: 277 -----------------------------------------------EEFMTVD--LEEE 287
Query: 263 ADPPAFQVA---ERERM---------------VKASAEEN-----------SSFERESDS 293
DPPAF+ A +RER+ + EE+ +S ER
Sbjct: 288 QDPPAFKAARKKDRERLQRLNIDTEINELQAEIDKQLEEHRLGKMKKRKDAASIERADTD 347
Query: 294 PFM--SRVDKVQSPEPESIGVPKNCTTQTASNE-------GEGDHTKTPG---------- 334
F+ S +D ++ + P N + N G G + + G
Sbjct: 348 RFIRESNLDVIKHYVGNDVDDPDNDFQDSEMNNINDRLITGLGPNIASMGLISINDRENE 407
Query: 335 ----VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 390
V+ E G + +D+DD E+D Y+ +E+E +K +W ++N EYL +Q KE
Sbjct: 408 TKESVNTNFENDTGEIDVADLDDEELDSYIMSEKEAQFKHNLWNKVNAEYLNQQKEKEER 467
Query: 391 AAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEA 450
+ R K+ KN PA TA EA
Sbjct: 468 RQKE---------------------KEEGKPEKKRRRTTKRN------KNQVPANTAGEA 500
Query: 451 TRRMLTKKRLSSKINYDVLEKL 472
+ML +K++SSKINY+VL+ L
Sbjct: 501 IEKMLQEKKISSKINYEVLKSL 522
>gi|342319941|gb|EGU11886.1| Transcription factor TFIIIB complex subunit brf1 [Rhodotorula
glutinis ATCC 204091]
Length = 678
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 160/508 (31%), Positives = 235/508 (46%), Gaps = 75/508 (14%)
Query: 9 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 68
R M+ A + S+ + +VA RF+ +AV +FTKGRRT+ V A+CLY ACRQ + +LID
Sbjct: 89 RIMELATGLRLSEHLQNVATRFFNLAVNMSFTKGRRTQYVAAACLYAACRQANGTQMLID 148
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
FS+ L INV+ LG+ YL+L + L I + VDP I++ +F L G +KV
Sbjct: 149 FSDLLEINVFVLGSTYLKLVRQLNIN-----IPVVDPVIYITRFAALLDFGEETQKVALD 203
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A ++ M RDW+ GR+PSG+CGA L ++A + + S ++V++V I + TL KRL E
Sbjct: 204 ATRLVNRMGRDWMQIGRRPSGICGACLLLAARMNNFRRSIEEVVQVVKIADVTLRKRLAE 263
Query: 188 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 247
F+ T SG+LT+ DF R L E + P + L K +D K A R
Sbjct: 264 FKETASGNLTVSDF--RSIWLEE-------THDPPAYAVG--LKKEEDARKEQA----RK 308
Query: 248 CYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQS--- 304
E+ + SE D ++AERE A AE++ + S SP R ++
Sbjct: 309 MREDSIAASETDSVVGDRAFRELAERE--ATADAEDDIA----SSSPVRERARGKENEVE 362
Query: 305 --------PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE- 355
P+P + + K + EG P DA +E D ++ + D E
Sbjct: 363 VEGAMLPPPKPSAKALGKRKRVEPEEEEG-----GAPSSDAASEREDVAEELLEGDGHEQ 417
Query: 356 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL------ 409
D + E + + + +++ E LE Q K A + A E + EGL
Sbjct: 418 YDAVIEGELQNYLGSNVGVKLSHE-LESQEQKRRAKISQSPAYELDTNDSLEGLDEEELD 476
Query: 410 ---------QAAQELAAAAAAAVAKSRKEKQQKRAAEAK--NSGPAQ------------- 445
Q +L K EKQ E K N P +
Sbjct: 477 AFICTEEEVQIKAKLWMEHNKEYLKELAEKQTGPDGELKPINKRPRKKTKPRDGANPTGL 536
Query: 446 TALEATRRMLTKKRLSSKINYDVLEKLF 473
TA +AT +ML KK+ S KINYD ++ LF
Sbjct: 537 TAADATTKMLEKKKFSKKINYDAIKNLF 564
>gi|294660130|ref|XP_462571.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
gi|199434484|emb|CAG91084.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
Length = 583
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/516 (26%), Positives = 233/516 (45%), Gaps = 79/516 (15%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 93 IRRIATALKI--PDYIADAAGAWFRLALTNNFVQGRRSQNVLAACLYVACRKEKTHHMLI 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L N KV
Sbjct: 151 DFSSRLQISVYSLGATFLKMVKTLHITS----LPLADPSLFIQHFAEKLNFRDQNSKVIK 206
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E TL +RL
Sbjct: 207 DAVKLAQRMANDWIHEGRRPAGVAGACVLLAARMNNFRRTHAEIVAVAHVAEETLQRRLN 266
Query: 187 EFENTDSGSLTIEDF-------------MARKKELHEGVAANLPNNGPKVSGMNEVLCKH 233
EF+ T SG LT+E F R ++L +A L + + E L K
Sbjct: 267 EFKKTKSGELTVESFRESLDTEVSNPPSFDRNRDLELKLAKQLKDKEAALKKFEE-LAKS 325
Query: 234 KDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAF--QVAERERMVKASAEENSSFERES 291
+D + EE T + L+ + Q +++++++K ++ E E
Sbjct: 326 RDNTPDYDSD---DVSEEGSTRKQDLQDIIEDSRLKNQQSKKDKLLKTILKDCDLSENEI 382
Query: 292 DSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV--------DATTEASD 343
+ + S+ + + +T E + D K + D ++ S
Sbjct: 383 SEQLARIIQNQKKSLQNSMYMIPSELQRTTDEEEKIDLDKPRNLVKNLPKTQDLLSKISS 442
Query: 344 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 403
F D+DD E+D +L E+E K+ +W +N +++ Q K
Sbjct: 443 DPKEFDDLDDSELDHFLLTEDEYKLKERLWTGLNHDFIVAQEKKRLK------------- 489
Query: 404 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKN----------------------- 440
Q EL + A +RK+++Q + + +
Sbjct: 490 ------QETDELTGNTSGA---NRKKRRQGKNSGVEGIDGDFVNEMGINDALTGIGVDEA 540
Query: 441 SGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
+G TA ++ +RML+KK S KINY L LFDD+
Sbjct: 541 TGEPLTAADSAKRMLSKKSFSKKINYATLGDLFDDN 576
>gi|195144240|ref|XP_002013104.1| GL23944 [Drosophila persimilis]
gi|194102047|gb|EDW24090.1| GL23944 [Drosophila persimilis]
Length = 665
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 226/481 (46%), Gaps = 88/481 (18%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-- 202
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMVDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTV 284
Query: 203 -------------ARKK--------------ELHEGVAANLPNN-GPKVSGMNEVLCKHK 234
ARKK EL + + A+L + G S + L K K
Sbjct: 285 DLEREQDPPSFRAARKKDRERIKDMGEHELTELQKEIDAHLEKDLGKYSSSVFRQLTKIK 344
Query: 235 -DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDS 293
DT G +S E + + D F ++K E N ++
Sbjct: 345 GDTSFGSEPGTPKSVCENDIEME-------DSRQFIEQSNAAIIKDLIEHNEDVKKTEPG 397
Query: 294 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 353
M+ ++ ++ P+ E+I C T S + + K P TE D++D
Sbjct: 398 SLMAGIEGLR-PDIEAI-----CRV-TQSELEDVERAKQP---LETELV-----IDDLND 442
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
E+D Y+ E+E K +W+ MN EYL+EQ ++ +
Sbjct: 443 DELDQYVLTEDEAVTKLEMWKNMNAEYLQEQKERD------------------------E 478
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD+L+ L
Sbjct: 479 RLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYDILKTLT 533
Query: 474 D 474
D
Sbjct: 534 D 534
>gi|198451369|ref|XP_001358335.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
gi|198131458|gb|EAL27473.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
Length = 665
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 226/481 (46%), Gaps = 88/481 (18%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-- 202
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMVDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTV 284
Query: 203 -------------ARKK--------------ELHEGVAANLPNN-GPKVSGMNEVLCKHK 234
ARKK EL + + A+L + G S + L K K
Sbjct: 285 DLEREQDPPSFRAARKKDRERINNIGEHELTELQKEIDAHLEKDLGKYSSSVFRQLTKIK 344
Query: 235 -DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDS 293
DT G +S E + + D F ++K E N ++
Sbjct: 345 GDTSFGSEPGTPKSVCENDIEME-------DSRQFIEQSNAAIIKDLIEHNEDVKKTEPG 397
Query: 294 PFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDD 353
M+ ++ ++ P+ E+I C T S + + K P TE D++D
Sbjct: 398 SLMAGIEGLR-PDIEAI-----CRV-TQSELEDVERAKQP---LETELV-----IDDLND 442
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
E+D Y+ E+E K +W+ MN EYL+EQ ++ +
Sbjct: 443 DELDQYVLTEDEAVSKLEMWKNMNAEYLQEQKERD------------------------E 478
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD+L+ L
Sbjct: 479 RLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYDILKTLT 533
Query: 474 D 474
D
Sbjct: 534 D 534
>gi|330796592|ref|XP_003286350.1| hypothetical protein DICPUDRAFT_6794 [Dictyostelium purpureum]
gi|325083701|gb|EGC37147.1| hypothetical protein DICPUDRAFT_6794, partial [Dictyostelium
purpureum]
Length = 426
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 117/174 (67%), Gaps = 6/174 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A+R + +A+ NFTKGR+T+ V ASCLY+ CR++ P LLIDFS L +NV+ L
Sbjct: 92 IDSAQRSFELAMENNFTKGRKTKLVAASCLYVVCRREKTPHLLIDFSEVLQVNVFTLAHT 151
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 142
+LQL ++L I L VDPS+F+++F+ L G K+V TA ++A MKRDW+ T
Sbjct: 152 FLQLIKLLNIQ-----LPIVDPSLFIYRFSSSLEFGSQTKEVTATANKLVARMKRDWMCT 206
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 196
GRKPSG+CGAALY+++ HG K S +IV IV I E+TL+ RL EF T S SL
Sbjct: 207 GRKPSGICGAALYIASKIHGFKRSMKEIVHIVKIGESTLLARLEEFRRTPSASL 260
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 345 SDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREYLEEQAAKE 388
+D D+ + E+D YL H++E K++IW E+N+E++E+ A ++
Sbjct: 364 NDTLDDLSEDELDLYLEHDKETVKKKEVIWTELNKEWIEKNAERQ 408
>gi|66813424|ref|XP_640891.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
gi|60468904|gb|EAL66904.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
Length = 706
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 125/202 (61%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E A + Q+ N+L I ++ A+R + +A+ NFTKGR+T V A+CLY+ CR++
Sbjct: 74 VENARKKLDQIGNSLRI--RSHLIDSAQRTFELAMENNFTKGRQTRLVAAACLYIVCRRE 131
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P LLIDFS L +NV+ + +LQL ++L I L VDPS F+ +F L G
Sbjct: 132 RTPHLLIDFSENLQVNVFIVAGTFLQLIKLLNIQ-----LPIVDPSFFIQRFASALEFGD 186
Query: 121 NKK-VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K V TA ++A MKRDW++ GRKPSG+CGA+LY+++ HG K S +IV +V I E
Sbjct: 187 QTKDVIATANKLVARMKRDWMSIGRKPSGICGASLYIASKIHGFKRSMKEIVHVVKIGEQ 246
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
TL+ RL EF T + +L ++F
Sbjct: 247 TLINRLDEFRKTPTATLRFDEF 268
>gi|159476536|ref|XP_001696367.1| hypothetical protein CHLREDRAFT_112803 [Chlamydomonas reinhardtii]
gi|158282592|gb|EDP08344.1| predicted protein [Chlamydomonas reinhardtii]
Length = 167
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 121/165 (73%), Gaps = 3/165 (1%)
Query: 37 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 96
RNFT+GRR QV A CLY+ CR + +P++LIDFS++L++NVY LGAV+LQL ++L + +
Sbjct: 3 RNFTRGRRVNQVAAVCLYIFCRLERRPYMLIDFSDHLSVNVYALGAVFLQLLKLLRLDEH 62
Query: 97 SNVLKQVDPSIFLHKFTDRL-LPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAA 153
+ K +DPS+FL++F DRL LP KV +TA ++ SMKRDW+ TGR+PSG+CGAA
Sbjct: 63 GTLTKPIDPSLFLNRFVDRLRLPTQELKSKVGNTAMRLVQSMKRDWMLTGRRPSGICGAA 122
Query: 154 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 198
L+++A HG++ +K D++ IVHI AT+ KR++E T LT+
Sbjct: 123 LFLAAHIHGVEKTKRDVIAIVHIGWATVEKRVMELAETRDAQLTL 167
>gi|425768851|gb|EKV07363.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum Pd1]
gi|425770184|gb|EKV08657.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum PHI26]
Length = 740
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 148/492 (30%), Positives = 219/492 (44%), Gaps = 52/492 (10%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
M Q+ AL I ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 143 MLQLSRALTIPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQNGNTVML 200
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVC 125
IDF++ L INV++LG Y L L + ++ +DP +++F +L G + V
Sbjct: 201 IDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSLMAVA 260
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+GLCGAAL ++A + + + ++V IV + E T+ +RL
Sbjct: 261 GEAVRIVQRMNRDWMTTGRRPAGLCGAALILAARMNNFRRTVREVVYIVKVTETTISQRL 320
Query: 186 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPK--VSGMNEVLCKHKDTGKPFAC 242
EF +T+SG LT++ F + + E H+ + G K + + E + +D P
Sbjct: 321 NEFGSTESGELTVDQFRSVQLENTHDPPSFTRGREGRKSRIKKLPETAAELEDNDSP--- 377
Query: 243 GLCRSCYEEFMTISEGLEGGADP-----PAFQVAERERMVKASAEE-NSSFERESDSPFM 296
S E +G A P PA R A+ N E + P
Sbjct: 378 --TESEAESVQPPRIDADGFAIPSLPIDPALTAISHGRRASVIAKAVNEVVEDIKNEPVH 435
Query: 297 SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTP-----------GVDATTEASDGS 345
S+ + P PE Q AS D ++ G + T +
Sbjct: 436 SKGKGKRQPTPEP------SAEQVASEAALEDEMRSMLAQGSSMIESIGSEQPTRPTVSD 489
Query: 346 DNFSDIDDFEVDGYLHN----EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 401
D +FE D + N E K+ IW N+EYL Q AK A K ALE S
Sbjct: 490 STEIDAAEFEDDPEVANCLLLPAEVEIKESIWVTENKEYLRTQQAK-----ALKRALEES 544
Query: 402 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 461
+ ++ V E + R++ A T EATRRML ++ S
Sbjct: 545 TGGG--APRKPRKRRRGRLGDVTYLEGEGEDGRSSR------ASTPAEATRRMLERRGYS 596
Query: 462 SKINYDVLEKLF 473
KINY +L+ L+
Sbjct: 597 KKINYSLLDTLY 608
>gi|452820163|gb|EME27209.1| RNA polymerase III transcription factor IIIB [Galdieria
sulphuraria]
Length = 547
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 8/191 (4%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
AL++ S E A R + +A+ NF +GR+ V ASCLY+ CR++ P LLIDFS+YL
Sbjct: 116 ALHLNPSQE--EQAFRMFLLAIEHNFLQGRKASNVCASCLYIVCRREKTPHLLIDFSDYL 173
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 132
NVY+LG +L+ ++L ++ L +DPS+++H+F +L V +A ++
Sbjct: 174 QTNVYDLGRTFLKFARILNLS-----LPIIDPSLYIHRFASKLGFEEKTHAVATSALRLI 228
Query: 133 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 192
A MKRDWI TGR+PSGLCGAAL+V+A HG S+ +IV +V I + TL KRL+E E T
Sbjct: 229 ARMKRDWIHTGRRPSGLCGAALFVAAKMHGFYRSQREIVNVVRIGDVTLRKRLLELEETP 288
Query: 193 SGSLTIEDFMA 203
S LT ++ A
Sbjct: 289 SALLTADEIDA 299
>gi|387597044|gb|EIJ94664.1| transcription initiation factor IIB [Nematocida parisii ERTm1]
Length = 448
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 130/193 (67%), Gaps = 8/193 (4%)
Query: 9 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 68
+ + AL IGES ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+D
Sbjct: 82 KSIGEALGIGESQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVD 139
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 128
F+ L INV+++G+++L+L ++L I + VDPS+F+ +F +L N+ V TA
Sbjct: 140 FAYILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSKL-NLNNQNVGKTA 193
Query: 129 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
++A M RDWI GRKP+G+CGAA+ +S+ HG + + ++ +V +CEAT+ KRL+E
Sbjct: 194 LRLIARMDRDWIVIGRKPAGICGAAILISSRIHGTERTVEEVANVVKVCEATINKRLMEL 253
Query: 189 ENTDSGSLTIEDF 201
+ T + +L+I +F
Sbjct: 254 KETATANLSISEF 266
>gi|387593387|gb|EIJ88411.1| transcription initiation factor IIB [Nematocida parisii ERTm3]
Length = 466
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 130/193 (67%), Gaps = 8/193 (4%)
Query: 9 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 68
+ + AL IGES ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+D
Sbjct: 82 KSIGEALGIGESQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVD 139
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 128
F+ L INV+++G+++L+L ++L I + VDPS+F+ +F +L N+ V TA
Sbjct: 140 FAYILRINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSKL-NLNNQNVGKTA 193
Query: 129 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
++A M RDWI GRKP+G+CGAA+ +S+ HG + + ++ +V +CEAT+ KRL+E
Sbjct: 194 LRLIARMDRDWIVIGRKPAGICGAAILISSRIHGTERTVEEVANVVKVCEATINKRLMEL 253
Query: 189 ENTDSGSLTIEDF 201
+ T + +L+I +F
Sbjct: 254 KETATANLSISEF 266
>gi|194900456|ref|XP_001979773.1| GG16780 [Drosophila erecta]
gi|190651476|gb|EDV48731.1| GG16780 [Drosophila erecta]
Length = 668
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 139/483 (28%), Positives = 227/483 (46%), Gaps = 93/483 (19%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-- 202
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTV 284
Query: 203 -------------ARKK--------------ELHEGVAANLPNN-GPKVSGMNEVLCKHK 234
ARKK EL + + A+L + G + + L K K
Sbjct: 285 DLEREQDPPSFKAARKKDRERIKDMGEHELTELQKEIDAHLEKDLGKYSNSVYRQLTKGK 344
Query: 235 DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSP 294
+ G +S E+ + + E + F ++K +N ++
Sbjct: 345 GCTPLSSPGTPKSTSEKDIEMEESRQ-------FIEQSNAEVIKELIAKNEDVKKAEPGG 397
Query: 295 FMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDF 354
++ ++ ++ P+ E+I C T S+ + + K P E +D+ +D
Sbjct: 398 LVAGIEGLR-PDIEAI-----CRV-TQSDLEDVEKAKQP-----QEQELITDDLND---D 442
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 414
E+D Y+ E+E K +W+ +N EYL+EQ +E
Sbjct: 443 ELDQYVLTEDEALAKFEMWKNLNAEYLQEQKERE-------------------------- 476
Query: 415 LAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINYDVLEK 471
+AK R+E + +R GP+ TA EA +ML +K++SSKINY++L+
Sbjct: 477 ------ERLAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINYEILKT 530
Query: 472 LFD 474
L D
Sbjct: 531 LTD 533
>gi|255942361|ref|XP_002561949.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586682|emb|CAP94327.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 739
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 150/494 (30%), Positives = 218/494 (44%), Gaps = 56/494 (11%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
M Q+ AL I ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 143 MLQLSRALTIPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQNGNTVML 200
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVC 125
IDF++ L INV++LG Y L L + ++ +DP +++F +L G + V
Sbjct: 201 IDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSLMAVA 260
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+GLCGAAL ++A + + + ++V IV + E T+ +RL
Sbjct: 261 GEAVRIVQRMNRDWMTTGRRPAGLCGAALILAARMNNFRRTVREVVYIVKVTETTISQRL 320
Query: 186 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPK--VSGMNEVLCKHKDTGKPFAC 242
EF +T+SG LT++ F + + E H+ + G K V + E + +D P
Sbjct: 321 NEFGSTESGELTVDQFRSVQLENTHDPPSFTRGREGRKSRVKRLPETAAELEDDDSP--- 377
Query: 243 GLCRSCYEEFMTISEGLEGGADP-----PAFQVAERERMVKASAEE-NSSFERESDSPFM 296
S E +G A P PA R A+ N E + P
Sbjct: 378 --TESEAESVQPPRIDADGFAIPSLPIDPALTATSHGRRASVIAKAVNEVVEDIKNEPVH 435
Query: 297 SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKT-----------------PGVDATT 339
S+ + P PE Q AS D ++ P +
Sbjct: 436 SKGKGKREPTPEP------SAEQVASEAALEDEMRSMLAQGSNMIESVGSEQPPRPTVSD 489
Query: 340 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 399
A + F D D EV L E K+ IW N+EYL Q AK A K ALE
Sbjct: 490 SAEIDAAEFED--DPEVANCLLLPAEVEIKESIWVTENKEYLRAQQAK-----ALKRALE 542
Query: 400 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 459
S + ++ V E + R++ A T EATRRML ++
Sbjct: 543 ESTGGG--TPRKPRKRRRGRLGDVTYLEGEGEDGRSSR------ASTPAEATRRMLERRG 594
Query: 460 LSSKINYDVLEKLF 473
S KINY +L+ L+
Sbjct: 595 YSKKINYSLLDTLY 608
>gi|391339520|ref|XP_003744096.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Metaseiulus occidentalis]
Length = 689
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 115/183 (62%), Gaps = 6/183 (3%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 79
+D+IV A R Y +A+ RNFT GRR V A+C+Y+ CR K +L+D S+ + +NVYE
Sbjct: 100 NDDIVESAMRLYEMALIRNFTVGRRRSHVLAACIYITCRLKESSLMLLDISDVVQVNVYE 159
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRD 138
LG Y +L Q L+I + +DP I++ ++ +L L G KV TA +L MKRD
Sbjct: 160 LGRTYTKLAQELFI-----TIPVLDPCIYVTRYAQKLELEGDTHKVSLTALRLLQRMKRD 214
Query: 139 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 198
W+ GR+PSGLCGAAL V+A +G S D+V IV++ +T+ KRL EF T SG L +
Sbjct: 215 WMAIGRRPSGLCGAALLVAARMNGYNRSVQDLVGIVNMSTSTIRKRLTEFAETPSGKLNL 274
Query: 199 EDF 201
++F
Sbjct: 275 DEF 277
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 340 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALE 399
E DG+ + IDD E+D Y+ +EE K +W N +L+
Sbjct: 435 EDGDGALDLDGIDDEEIDNYILTKEESALKAKMWVTENIGFLK----------------- 477
Query: 400 ASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 459
L+ +++ + AA K K+K ++ + N G T E +++L +K+
Sbjct: 478 ---------LEREKQIQKSRDAAAGKETKKKLKRSRKKLTNQG---TPGENFQKILQEKK 525
Query: 460 LSSKINYDVLEKL 472
+S KINYDVL+ +
Sbjct: 526 ISKKINYDVLKSI 538
>gi|323451551|gb|EGB07428.1| hypothetical protein AURANDRAFT_71825 [Aureococcus anophagefferens]
Length = 1025
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 124/202 (61%), Gaps = 8/202 (3%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 69
Q+ ++L +G V A R +G+A RNFT+GR+T V +CLY+ CR++ +LIDF
Sbjct: 493 QVASSLRLGA--HFVDGAHRLFGMAAQRNFTQGRKTLHVVCACLYVMCRREKSAHMLIDF 550
Query: 70 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTA 128
S+ L +NVY LGA +L+ ++L + L +DPS+++H+F +L G V TA
Sbjct: 551 SDVLQVNVYALGATFLKFRRLLNLE-----LPIIDPSLYIHRFAAKLELGDKCGAVATTA 605
Query: 129 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
++ MKRDWI TGR+P+G+C AAL V A HG ++ D+VK + +C T+ KRL +F
Sbjct: 606 LRVVQRMKRDWIETGRRPAGVCAAALLVGARAHGFHRTQDDVVKALRVCGMTVAKRLADF 665
Query: 189 ENTDSGSLTIEDFMARKKELHE 210
+ T + L++ +F R +L E
Sbjct: 666 QATPAAQLSLAEFNRRSDDLAE 687
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 348 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 407
F+D+ D E+DG++ +EE K IW MN++YL ++ K+ AAA A P+
Sbjct: 822 FADVADDEIDGFILTDEEVKQKSEIWTTMNKDYLAQRDEKDKLAAARAEASAG-----PD 876
Query: 408 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 467
G + AK ++ +A A+ S ++TA EA ++ KKR S KINY
Sbjct: 877 G---------GPSDKAAKRGRKASAGKAKGARASKDSRTAKEALIDVVEKKRFSKKINYG 927
Query: 468 VLEKLFDD 475
VLE +F D
Sbjct: 928 VLEGIFGD 935
>gi|325192948|emb|CCA27332.1| transcription factor IIIB putative [Albugo laibachii Nc14]
Length = 531
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 113/179 (63%), Gaps = 6/179 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V A R Y +A+ RNFT+GR++E V A+CLY+ CR++ P LLIDFS+ L NVY LG V
Sbjct: 107 VDSAFRLYALALQRNFTRGRKSEVVIAACLYIVCRRERSPHLLIDFSDALQWNVYVLGGV 166
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 142
+L+ C +L I L VDPS+++H+F +L L + ++ASMKRDWI T
Sbjct: 167 FLKFCNLLQIH-----LPLVDPSLYIHRFASQLRLKSKTHTIATIGLRLVASMKRDWIQT 221
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
GR+PSG+CGAAL ++A + S D++ +V+I E TL +RL EF +T LT +
Sbjct: 222 GRRPSGICGAALLIAARCQSVPCSFQDVMDVVNIGEHTLRRRLKEFADTPIAQLTYQQI 280
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 37/131 (28%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D+ SD+DD E+ G + EE K ++WE+MN E+ ++Q K +
Sbjct: 433 DSLSDLDDEEICGLILTPEEVDQKALLWEQMNGEFFKKQEEKRLIKGSTPPP-------- 484
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
+K++KR EA + P TA A ++ ++ IN
Sbjct: 485 -----------------------KKKRKRVMEA-DIPPPDTAQHAIYKLKSR-----NIN 515
Query: 466 YDVLEKLFDDS 476
YDV+ +LF DS
Sbjct: 516 YDVINELFGDS 526
>gi|347971505|ref|XP_313145.5| AGAP004233-PA [Anopheles gambiae str. PEST]
gi|333468699|gb|EAA08645.5| AGAP004233-PA [Anopheles gambiae str. PEST]
Length = 688
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/477 (29%), Positives = 223/477 (46%), Gaps = 78/477 (16%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A F+ +A+ RN T+GRR + A+C+Y+ CR + LLID S+ L I YELG
Sbjct: 107 IETACNFFKMALIRNLTRGRRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRT 166
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 142
YL+L Q L + + +DP I++ ++ ++L +V TA+ ++ MK+D I +
Sbjct: 167 YLKLSQSLCLN-----IPSIDPCIYIMRYANKLEFKEKTHEVSMTAQRLVQRMKKDSIHS 221
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGAAL ++A H + +DIV+IV I E+TL KRL EF T S +LT+++FM
Sbjct: 222 GRRPSGLCGAALLLAARMHDFSRTPNDIVRIVKIHESTLRKRLFEFGETPSSALTVDEFM 281
Query: 203 ARKKELHE---GVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGL 259
A E + A + ++ + E EF + +
Sbjct: 282 AVDLEAEQDPPAFKAARKRDKERLQKLEEQTT-------------------EFNQLQAEI 322
Query: 260 EGGADPPAFQVAERERMVKAS---AEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNC 316
+ D ++ ++ ++ +E F ES ++ K ++P G KN
Sbjct: 323 DAALDREMTRLGKKRKVKNVDFDELQETGQFIEESTMDVITECLKEETPGSGGGGREKNS 382
Query: 317 TTQTASNEGEGDHTKTPGVDATTEASD------GSDNF-------------SDIDDFEVD 357
+ S EG + A TE GS +F D+DD E++
Sbjct: 383 ANSSKSFIPEGMRPDLRAICANTEKERPAGEELGSGSFLPEGDVGEGELLTEDLDDDEIN 442
Query: 358 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 417
GY+ EEE K + WE++N EYL++ KE A +
Sbjct: 443 GYIMTEEEARTKNMQWEKLNEEYLKDMKIKEERLAKER---------------------- 480
Query: 418 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
+ + EK+++R + K GP+ +A EA +L +K++SSKINYD+L+ L D
Sbjct: 481 ------EEGKPEKKKRRNVKKKMFGPSPSAREAIEMILQEKKISSKINYDILKTLTD 531
>gi|392597143|gb|EIW86465.1| BRF1-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 639
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 9/185 (4%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVY 78
SD + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+
Sbjct: 99 SDIVALAATRLYTLAVEHKFTKGRKSINVAAVCLYVACRQKETRNYMLIDFSDLLQVNVF 158
Query: 79 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMK 136
ELG +YLQL Q L + L VDPS ++ +F+ LL G++ KV A ++
Sbjct: 159 ELGHIYLQLVQTLNLR-----LPVVDPSHYISRFS-ALLEFGDETHKVATDAVRLVQRFD 212
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 196
RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KRL EF T SGSL
Sbjct: 213 RDWMTRGRRPAGICGAALLLAARMNNFRRSIEEIVQVVKIADTTLKKRLEEFRKTPSGSL 272
Query: 197 TIEDF 201
T+ DF
Sbjct: 273 TLADF 277
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 27/131 (20%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D ++D+ E+DG++ +E+E K+ IW EMNREYLE AAK
Sbjct: 444 DELMNLDEDELDGFILSEDEVRLKERIWVEMNREYLEALAAK------------------ 485
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 464
A++L + R++ K + SG TA E+ + ++ K R S +I
Sbjct: 486 ------AEQLEKGTTTVKTRKRRKTNTKPRDASTPSG--STAAESVQNLIKKNSRYSKRI 537
Query: 465 NYDVLEKLFDD 475
NYD L+ LF D
Sbjct: 538 NYDALKNLFVD 548
>gi|426192806|gb|EKV42741.1| hypothetical protein AGABI2DRAFT_78178, partial [Agaricus bisporus
var. bisporus H97]
Length = 590
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 130/204 (63%), Gaps = 11/204 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E A ++ + + L + E +V A+R Y +AV FTKGR++ V A CLY+ACRQK
Sbjct: 79 IENATKKIQNIASILRLSEV--VVLAARRMYTLAVEHKFTKGRKSLNVVAVCLYVACRQK 136
Query: 61 -SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 119
++ ++LIDFS+ L +NV+ELG YLQL Q+L + L VDPS ++ +F LL
Sbjct: 137 ETRNYMLIDFSDLLQVNVFELGHTYLQLVQILNLR-----LPLVDPSHYISRFA-ALLEF 190
Query: 120 GNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
G++ KV A ++ RDW+T GR+P+G+CGAAL ++A + + S +IV++V I
Sbjct: 191 GDETHKVATDAVRLVQRFDRDWMTKGRRPAGICGAALLLAARMNNFRRSIEEIVQVVKIA 250
Query: 178 EATLMKRLIEFENTDSGSLTIEDF 201
+ TL KRL EF+ T SGSLT+ DF
Sbjct: 251 DTTLKKRLDEFKATPSGSLTLADF 274
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 28/143 (19%)
Query: 345 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 404
+D +D+ E++ ++ +E+E K+ +W E+NR+YLE A + L +S K
Sbjct: 385 ADELMGLDEEELNRFILSEDEVRIKERVWVELNRDYLEAIAGSIPGSRYIFHMLTSSQK- 443
Query: 405 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 463
RK + + A S TA E+ R ++ K + S +
Sbjct: 444 ----------------------RKSNKPRDATTPSGS----TAAESVRNLIKKNPKYSKR 477
Query: 464 INYDVLEKLFDDSVCLYSISICL 486
INYD L+ LF D+ S S L
Sbjct: 478 INYDALKDLFVDTNTPPSFSQSL 500
>gi|409074474|gb|EKM74871.1| hypothetical protein AGABI1DRAFT_47247, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 662
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 130/204 (63%), Gaps = 11/204 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E A ++ + + L + E +V A+R Y +AV FTKGR++ V A CLY+ACRQK
Sbjct: 85 IENATKKIQNIASILRLSEV--VVLAARRMYTLAVEHKFTKGRKSLNVVAVCLYVACRQK 142
Query: 61 -SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 119
++ ++LIDFS+ L +NV+ELG YLQL Q+L + L VDPS ++ +F LL
Sbjct: 143 ETRNYMLIDFSDLLQVNVFELGHTYLQLVQILNLR-----LPLVDPSHYISRFA-ALLEF 196
Query: 120 GNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
G++ KV A ++ RDW+T GR+P+G+CGAAL ++A + + S +IV++V I
Sbjct: 197 GDETHKVATDAVRLVQRFDRDWMTKGRRPAGICGAALLLAARMNNFRRSIEEIVQVVKIA 256
Query: 178 EATLMKRLIEFENTDSGSLTIEDF 201
+ TL KRL EF+ T SGSLT+ DF
Sbjct: 257 DTTLKKRLDEFKATPSGSLTLADF 280
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 29/143 (20%)
Query: 345 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 404
+D +D+ E++ ++ +++E K+ +W E+NR+YLE AAK
Sbjct: 458 ADELMGLDEEELNRFILSDDEVRIKERVWVELNRDYLEAIAAK----------------- 500
Query: 405 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 463
G Q + A A ++ +++ + R A + TA E+ R ++ K + S +
Sbjct: 501 ---GYQ-----QDSTATAKSRKKRKSNKPRDATTPS---GSTAAESVRNLIKKNPKYSKR 549
Query: 464 INYDVLEKLFDDSVCLYSISICL 486
INYD L+ LF D+ S S L
Sbjct: 550 INYDALKDLFVDTNTPPSFSQSL 572
>gi|159127363|gb|EDP52478.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus A1163]
Length = 749
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 142/493 (28%), Positives = 228/493 (46%), Gaps = 45/493 (9%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
+ Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 139 INQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 196
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 125
IDF++ L +NV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 197 IDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGTATMQVA 256
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 257 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITINQRL 316
Query: 186 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 244
EF +T+S LT++ F + + E H+ + G K S V K DT
Sbjct: 317 NEFSSTESAELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSVKRKASDTAAAIEGNT 374
Query: 245 CRSCYEEFMTI-SEGLEGGADP--PAFQVAERERM----------VKASAEENSSFERES 291
+ E + ++G + P PA A+ R V + E ++ + S
Sbjct: 375 QDATPAEPRRLDADGFAIPSLPIDPALTTADSGRRRASVTSVLNKVVSEVGEEAAIAK-S 433
Query: 292 DSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI 351
P + K+ P PE I + + + +G + +++ + + SD
Sbjct: 434 ARPAAPKRPKLPPPTPEQIASEEALENEMTALLSKGSNM----IESVASGREQENKVSDR 489
Query: 352 ---------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
DD EV L + E K+ IW N++YL Q AK A A+A
Sbjct: 490 AEIDASEFEDDPEVANCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAEA------ 543
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 462
+ G++ ++ V + + + S PA EATRRML ++ S
Sbjct: 544 -DSQPGMRKPRKRRRGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGFSK 598
Query: 463 KINYDVLEKLFDD 475
KINY +LE LF D
Sbjct: 599 KINYRLLESLFGD 611
>gi|254568370|ref|XP_002491295.1| TFIIIB B-related factor [Komagataella pastoris GS115]
gi|238031092|emb|CAY69015.1| TFIIIB B-related factor [Komagataella pastoris GS115]
gi|328352187|emb|CCA38586.1| Transcription factor IIIB 70 kDa subunit [Komagataella pastoris CBS
7435]
Length = 568
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 130/499 (26%), Positives = 229/499 (45%), Gaps = 72/499 (14%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G +D I A ++ +A+ NF +GRR++ V A+CLY+ACR+ +LIDFS+ L I+
Sbjct: 100 LGIADYISDAAYLWFRLALTNNFVQGRRSQNVVAACLYIACRKVKTHHMLIDFSSRLQIS 159
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASM 135
VY +GA +L++ + L+I++ L DPS+F+ F ++L G +K KV A + M
Sbjct: 160 VYSVGATFLKMVKTLHISN----LPLADPSLFIQHFAEQLNFGNSKIKVIKDAVKLAHRM 215
Query: 136 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 195
DWI GR+P+G+ GA L ++A + + + +I + I E+T+ KRL EF+NT++
Sbjct: 216 ADDWIHEGRRPAGIAGACLMLAARMNNFRRTHLEIAAVAKIGESTIQKRLNEFKNTNASK 275
Query: 196 LTIEDFMA-----------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 238
L+I++F ++K + + + N + K + MN +L + + +
Sbjct: 276 LSIDEFRKATNIESTAPPSYTSNRIKEKAIQQMINHNNKYSEEKETVMNFILKDSEISSE 335
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMV---------------KASAEE 283
+ + ++ + + P +V E +R + K
Sbjct: 336 EIRTYILKIQKQQREDLKRKVNQVVSPSPGEVGEIQRSIDEDEDDDDESEDESDKDGNTA 395
Query: 284 NS---SFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTE 340
NS SFER+ D+ + E + PKN + + G P
Sbjct: 396 NSIYNSFERQQQ-------DQARLIE---LNRPKNLHKLPTTGDLLGKIKSDP------- 438
Query: 341 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 400
+N D+DD E++G+L E+E K+ +W +N ++L EQ + + K A
Sbjct: 439 -----ENLEDVDDEELEGFLLTEDESRIKERVWVGLNHDFLIEQEKRRLKEESDKLAGHT 493
Query: 401 SYKNC------PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 454
+ K +GL + A+ + + Q + + G +AL + + M
Sbjct: 494 TIKRRRKKNIDDDGLGIPKTELTEFASGLDPAALGLQ----SSINSIGEGSSALSSAKSM 549
Query: 455 LTKKRLSSKINYDVLEKLF 473
L KK S K+NY +E LF
Sbjct: 550 LQKKSYSKKLNYAAVENLF 568
>gi|432948464|ref|XP_004084058.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 690
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+TE V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKLAVSKHLTRGRKTEHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHMLEFGLKTHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
LCGAAL V+A H + S D++ +V +C TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHKFRRSVKDVISVVKVCHTTLRKRLTEFEDTPTSQLTIDEFM 281
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 335 VDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAA 394
VD E S G + IDD E++ Y+ NE+E K +W + N EYL+EQ KE
Sbjct: 446 VDNPMEPS-GELDLEGIDDQEIEKYILNEKEVEVKTGLWMKQNAEYLQEQKEKE------ 498
Query: 395 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 454
E + +E K RK +Q + A TA EA +M
Sbjct: 499 ------------ERINKEKEQGIYKEKQKKKYRKREQIE----------ASTAEEAIEKM 536
Query: 455 LTKKRLSSKINYDVLEKL 472
L KK++SSKINYDVL L
Sbjct: 537 LEKKKISSKINYDVLRDL 554
>gi|302682668|ref|XP_003031015.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
gi|300104707|gb|EFI96112.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
Length = 543
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 127/197 (64%), Gaps = 9/197 (4%)
Query: 7 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFL 65
++ Q+ AL++ E + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++
Sbjct: 88 NIAQIAIALHLSEV--VRFAALRLYTLAVEHKFTKGRKSMNVAAVCLYVACRQKETRQYM 145
Query: 66 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKV 124
LIDFS+ L +NV+ELG +YLQL Q L + L VDPS ++ +F L G ++V
Sbjct: 146 LIDFSDILEVNVFELGHIYLQLVQTLCLR-----LPLVDPSHYISRFAALLEFGDETQRV 200
Query: 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
+ A ++ RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KR
Sbjct: 201 ANDAVRLVQRFDRDWMTRGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADVTLKKR 260
Query: 185 LIEFENTDSGSLTIEDF 201
L EF+NT SG+LT+ DF
Sbjct: 261 LEEFKNTPSGALTLADF 277
>gi|428176989|gb|EKX45871.1| hypothetical protein GUITHDRAFT_71051 [Guillardia theta CCMP2712]
Length = 356
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 114/179 (63%), Gaps = 6/179 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V VA RF+ AV +NF +GRRT V A+CLY+ CR+ +LIDF+ L I+VY+LG V
Sbjct: 104 VEVAHRFFQQAVQKNFIQGRRTNSVVAACLYIVCRRLKTSHMLIDFAEVLQIDVYDLGNV 163
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 142
+L+ C+ L+I L +DPS+++ +F L +V TA I+A M R+W+ T
Sbjct: 164 FLKFCKELHIK-----LDPIDPSLYIRRFASMLEFEEKTHQVAHTALRIVARMNREWMIT 218
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
GR+P+G+CGA L ++A HG +++ I ++V IC+ TL KRL EF+ T + LT+ +F
Sbjct: 219 GRRPAGICGAGLIIAAKMHGFNRTETQIAQVVRICDGTLKKRLSEFDETGASDLTVSEF 277
>gi|70999253|ref|XP_754348.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
fumigatus Af293]
gi|66851985|gb|EAL92310.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus Af293]
Length = 748
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 142/493 (28%), Positives = 228/493 (46%), Gaps = 45/493 (9%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
+ Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 139 INQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 196
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 125
IDF++ L +NV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 197 IDFADALMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGTATMQVA 256
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 257 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITINQRL 316
Query: 186 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 244
EF +T+S LT++ F + + E H+ + G K S V K DT
Sbjct: 317 NEFSSTESAELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSVKRKASDTAAAIEGNT 374
Query: 245 CRSCYEEFMTI-SEGLEGGADP--PAFQVAERERM----------VKASAEENSSFERES 291
+ E + ++G + P PA A+ R V + E ++ + S
Sbjct: 375 QDATPAEPRRLDADGFAIPSLPIDPALTTADSGRRRASVTSVLNKVVSEVGEEAAIAK-S 433
Query: 292 DSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI 351
P + K+ P PE I + + + +G + +++ + + SD
Sbjct: 434 ARPAAPKRPKLPPPTPEQIASEEALENEMTALLSKGSNM----IESVASGREQENKVSDR 489
Query: 352 ---------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
DD EV L + E K+ IW N++YL Q AK A A+A
Sbjct: 490 AEIDASEFEDDPEVANCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAEA------ 543
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 462
+ G++ ++ V + + + S PA EATRRML ++ S
Sbjct: 544 -DSQPGMRKPRKRRRGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGFSK 598
Query: 463 KINYDVLEKLFDD 475
KINY +LE LF D
Sbjct: 599 KINYRLLESLFGD 611
>gi|413946298|gb|AFW78947.1| hypothetical protein ZEAMMB73_193949 [Zea mays]
Length = 216
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 103/136 (75%), Gaps = 9/136 (6%)
Query: 142 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
T RKPSGLCGAALY++AL+HG ++K+DIV +VH+CEATL KRLIEFENTDSGSLTIE+F
Sbjct: 4 TRRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEF 63
Query: 202 MARKKELH-EGVAANLPNNGPKVSGMNEVLCKHKDTG-KPFACGLCRSCYEEFMTISEGL 259
+A E + E V+ + P +G E++CKHKD G + FA GLC CY +F +S GL
Sbjct: 64 LATADESNEEPVSKHSPKSG-------EIICKHKDKGFEHFAHGLCEKCYNKFTKLSGGL 116
Query: 260 EGGADPPAFQVAERER 275
EGG+ PPAFQ AE++R
Sbjct: 117 EGGSVPPAFQRAEKKR 132
>gi|119491136|ref|XP_001263190.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
gi|119411350|gb|EAW21293.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
Length = 752
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 141/493 (28%), Positives = 228/493 (46%), Gaps = 45/493 (9%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
+ Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 146 INQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 203
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 125
IDF++ L +NV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 IDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGTATMQVA 263
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 264 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITINQRL 323
Query: 186 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 244
EF +T+S LT++ F + + E H+ + G K S V K DT +
Sbjct: 324 NEFSSTESAELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSVKRKASDTAAEIEGDM 381
Query: 245 CRSCYEEFMTI-SEGLEGGADP--PAFQVAERERM----------VKASAEENSSFERES 291
+ E + ++G + P PA A+ R V + + S+ + S
Sbjct: 382 QDATPAEPRRLDADGFAIPSLPIDPALTTADSGRRRASVTSVLNEVVSEVGQESAIAK-S 440
Query: 292 DSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI 351
P + K+ P P+ I + + + +G + +++ + + SD
Sbjct: 441 ARPAAPKRPKLPPPTPDQIASEEALENEMTALLSKGSNM----IESVASGQEQENKVSDR 496
Query: 352 ---------DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
DD EV L + E K+ IW N++YL Q AK A A+A
Sbjct: 497 AEIDASEFEDDPEVANCLLSSAEVEIKERIWVHENKDYLRTQQAKALKRALAEA------ 550
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 462
+ G++ ++ V + + S PA EATRRML ++ S
Sbjct: 551 -DSQPGMRKPRKRRRGRLGDVTYLEGDGDDADGRSTRASTPA----EATRRMLERRGFSK 605
Query: 463 KINYDVLEKLFDD 475
KINY +LE LF D
Sbjct: 606 KINYRLLESLFGD 618
>gi|426248972|ref|XP_004018226.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Ovis aries]
Length = 798
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 122/197 (61%), Gaps = 8/197 (4%)
Query: 7 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 66
+ + N L + + + A F+ +AV+++ T+GRRT V A+CLYL CR + P +L
Sbjct: 235 QIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRRTAHVVAACLYLVCRTEGTPHML 292
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 125
+D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 293 LDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVS 347
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 348 MTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRL 407
Query: 186 IEFENTDSGSLTIEDFM 202
EFE+T + LT+++FM
Sbjct: 408 TEFEDTPTSQLTVDEFM 424
>gi|402221210|gb|EJU01279.1| hypothetical protein DACRYDRAFT_107836 [Dacryopinax sp. DJM-731
SS1]
Length = 738
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 129/204 (63%), Gaps = 7/204 (3%)
Query: 1 MEKAFDDMRQMKNAL--NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 58
ME+A RQ+ L ++G ++ ++ A+R++ +A FTKGRR+ V +C Y+A R
Sbjct: 94 MEQAKHKARQILQGLKRHLGITETVIGYAERWWILAYEMGFTKGRRSLLVIGACCYIAVR 153
Query: 59 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 118
Q +P +LID S+ L NV++LG VYLQL Q+L + + L VDP ++ +F+ L
Sbjct: 154 QHQRPIMLIDLSDLLQANVFDLGNVYLQLVQLLPVKN----LDLVDPEFYIERFSKLLEF 209
Query: 119 GGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
G ++ K+ D A I+ KRDW+ TGR+PSG+CGAAL ++A + + S +IV++V I
Sbjct: 210 GEDREKIRDDAVRIVHRFKRDWLYTGRRPSGICGAALLLAARMNNYRRSVLEIVQVVKIA 269
Query: 178 EATLMKRLIEFENTDSGSLTIEDF 201
+ TL KRL+EF T S S ++++F
Sbjct: 270 DTTLKKRLVEFGKTPSASFSLDEF 293
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
DG + D+D+ E+D Y+ + E K+ +W E+NR+YLE+ AA+EA A +
Sbjct: 541 DGEEEI-DLDEAELDDYILTDAEVEAKERVWVELNRQYLEKCAAREAVAQGEEEPAPKKR 599
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL---EATRRMLTKKR 459
K+ S K + ++ + + PA++A+ T R + +
Sbjct: 600 KH---------------------SNKRTGPRDSSNPRGATPAESAMALITGTYRKKGEPQ 638
Query: 460 LSSK-INYDVLEKLFDDSVCL 479
+ SK INYD LE+LF+ + L
Sbjct: 639 VRSKRINYDALEQLFNRPLKL 659
>gi|219129783|ref|XP_002185060.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403555|gb|EEC43507.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 601
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 121/195 (62%), Gaps = 8/195 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++++ + L +G V A R + IAV RNF +GRRT V A+CLY+ACRQ+ +LI
Sbjct: 164 IQEVASRLRLGT--HFVDAAHRLFTIAVERNFVQGRRTTHVVAACLYIACRQEKSQHMLI 221
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L +NVY LG +L+ ++L + L+ +DP++++++F L L V
Sbjct: 222 DFSDALQVNVYTLGTCFLKFRRLLGLK-----LEIIDPALYIYRFAAHLDLDEKANAVSL 276
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA ++A MKRDWI GR+P+G+C AAL +++ HG D+ +I+ +C T+ R+
Sbjct: 277 TALRLVARMKRDWIVAGRRPAGICAAALLIASRAHGFSRHHQDVTRILRVCGWTVTNRVK 336
Query: 187 EFENTDSGSLTIEDF 201
EFE+T S +LT+E F
Sbjct: 337 EFEHTPSAALTLEQF 351
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 23/130 (17%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D F++I + N+EE+ K++I+ ++N++YL Q KE+ + +A+L K
Sbjct: 471 DEFANI-------FRDNDEERE-KEVIFNKINKDYLVTQKRKESERLSVEASLLDREKT- 521
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
+ A A ++A +RK+K +K G T E + +++S KIN
Sbjct: 522 --------DAAQAESSARYNTRKKKSRK------ADGSIMTTEEQLLAAVAARKVSRKIN 567
Query: 466 YDVLEKLFDD 475
YD L +FD+
Sbjct: 568 YDALSSIFDE 577
>gi|428671958|gb|EKX72873.1| transcription factor IIIb subunit, putative [Babesia equi]
Length = 515
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 206/446 (46%), Gaps = 62/446 (13%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ D++ ++ AL + S E ++ A+ Y +AV RNFT GR V + CLY CR++
Sbjct: 80 LKRGCDNIERI--ALRLNLSPEHINKAQAIYKLAVQRNFTMGRNNLHVASCCLYTVCRRE 137
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P LLIDFS+ L V +G ++++L ++L+I+ + VDPSIF +F +L
Sbjct: 138 KTPHLLIDFSDILQTPVKTIGQIFMKLVRMLHIS-----VPNVDPSIFFERFASKLYLKD 192
Query: 121 N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
N +KV T I+ +M RDW+ TGR+P+GLCGAAL V+A HG+ D+ +V I
Sbjct: 193 NIQKVISTGVRIIQAMNRDWLCTGRRPTGLCGAALVVAARFHGISLPAEDVAAVVRISHP 252
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP 239
T+MKRL EF++T + L +F K +L LPN +++ K + K
Sbjct: 253 TIMKRLSEFKDTCAAHLKCSEF--EKVDLD-----TLPNIKLPPCLISKYAAKERKYAK- 304
Query: 240 FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSS---FERESDSPFM 296
L+G +D AE + K AE +S+ F+R+SD P +
Sbjct: 305 ------------------SLDGRSDVSTTDTAEYDLRGKDYAETDSTYSDFDRQSD-PCL 345
Query: 297 SRVDKVQSPEPESIGVPKNCTTQ--------TASNEGEGDHTKTPGV------DATTEAS 342
S + P +I C Q A + E P + + T
Sbjct: 346 SENSPILGPINVNIPTDVLCNDQPTAAQINNIAQSILENFKVNQPSIGGLCKFNETESCE 405
Query: 343 DGSDNFSDIDDFEVDG-YLHNEEEKHYKKIIWEEMNREYLE-------EQAAKEAAAAAA 394
D + D +D +V + E EK K +W+E+ ++ ++ E+ +E + A
Sbjct: 406 DSELSSDDEEDIQVFAEMILPESEKESKTKLWDEITKDIMQKVMRRQKERKKREESGQAI 465
Query: 395 KAA--LEASYKNCPEGLQAAQELAAA 418
K Y + PE AA+ A
Sbjct: 466 KKRKYTRRKYMDYPEANNAAESTKMA 491
>gi|403284473|ref|XP_003933594.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Saimiri
boliviensis boliviensis]
Length = 623
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 8/196 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 39 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 96
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 97 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 151
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 152 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 211
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LTI++FM
Sbjct: 212 EFEDTPTSQLTIDEFM 227
>gi|348536305|ref|XP_003455637.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Oreochromis niloticus]
Length = 700
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 122/196 (62%), Gaps = 8/196 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++Q+ + L + + + A F+ + V+++ T+GR+TE V A+CLYL CR + P +L+
Sbjct: 93 IQQLGSQLQLNQ--HCLDTAFNFFKLVVSKHLTRGRKTEHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G +V
Sbjct: 151 DLSDLLQVNVYILGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFGAKTHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + S D++ +V +C+ TL KRL
Sbjct: 206 TALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRSVKDVIGVVKVCQTTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LTI++FM
Sbjct: 266 EFEDTPTSQLTIDEFM 281
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 73/171 (42%), Gaps = 42/171 (24%)
Query: 305 PEPESIGVPKNCTTQTASNEGE---GDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 361
P S+ + + T S GE GDH ++ +D IDD E+D Y+
Sbjct: 429 PSAASLSLQQTFQTSDTSESGEKDLGDHPQSEELD-----------LEGIDDQEIDKYIL 477
Query: 362 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 421
NE+E K +W + N EYL+EQ K+ E + +E
Sbjct: 478 NEKEVQVKTELWMKQNAEYLKEQKEKQ------------------ERINKEKEEGTYKEK 519
Query: 422 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KS+K Q + A TA EA RML KK++SSKINYDVL L
Sbjct: 520 KKKKSKKRDQIE----------ALTAGEAIERMLEKKKISSKINYDVLRDL 560
>gi|378754531|gb|EHY64562.1| transcription initiation factor IIB [Nematocida sp. 1 ERTm2]
Length = 513
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 126/188 (67%), Gaps = 8/188 (4%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
AL IG+S ++ A R+Y +++ NFTKGR+T+ + A+CLY+ CR++ P +L+DF+ L
Sbjct: 87 ALGIGDSQ--INSAMRWYNLSLQFNFTKGRKTQVLLAACLYITCREEETPHMLVDFAYIL 144
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 133
INV+++G+++L+L ++L I + VDPS+F+ +F +L N+ + TA ++A
Sbjct: 145 RINVFKIGSIFLKLIRLLNIT-----MPLVDPSLFVPRFCSKL-SLNNQSIGKTALRLIA 198
Query: 134 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDS 193
M RDWI GRKP+G+CGAA+ +++ HG + + D+ V +CEAT+ KRL E + T +
Sbjct: 199 RMDRDWIVIGRKPAGICGAAILIASRIHGNERTVEDVAGAVRVCEATINKRLAELKETAT 258
Query: 194 GSLTIEDF 201
+L+I +F
Sbjct: 259 ANLSINEF 266
>gi|317137549|ref|XP_001727802.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
oryzae RIB40]
Length = 745
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 141/495 (28%), Positives = 233/495 (47%), Gaps = 46/495 (9%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
+ Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 146 INQLARALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 203
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 125
IDF++ L INV++LG Y L + L + ++ +DP +++F +L G +V
Sbjct: 204 IDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAKQLEFGAATMQVA 263
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 264 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRL 323
Query: 186 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 244
EF T+SG LT++ F + + E H+ + G K S + +T L
Sbjct: 324 NEFGATESGELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSFKRRPTETAADIEGDL 381
Query: 245 CRSC--------YEEFMTISEGLEGGADP--PAFQVAERERMVKASAEENSSFERESDSP 294
+ ++ ++G + P PA A+ ER + ++ E+ ++P
Sbjct: 382 TDAATTPSNIAPQQQKRVDADGFAIPSLPIDPALIAADGERRMSTTSVESEIAPEVGENP 441
Query: 295 FM--------SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD 346
S+ + +P P+ I + + + +G + +++TT
Sbjct: 442 GKPARGRPKGSKARPLPTPTPDQIASEEALENEMTAYLTKGSNM----IESTTVPRKAVS 497
Query: 347 NFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 400
++ID D EV L + E K+ IW N++YL Q AK A K ALE
Sbjct: 498 ESAEIDEAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRALEE 552
Query: 401 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 460
+ + G+ ++ V + + + + S PA EATRRML ++
Sbjct: 553 A--DSQPGMHKPRKRRRGRLGDVTYLQGDGEDGDGRSTRASTPA----EATRRMLERRGF 606
Query: 461 SSKINYDVLEKLFDD 475
S KINY +LE LF +
Sbjct: 607 SKKINYRLLESLFGE 621
>gi|441666045|ref|XP_004091858.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Nomascus leucogenys]
Length = 699
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 8/196 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LTI++FM
Sbjct: 266 EFEDTPTSQLTIDEFM 281
>gi|83770830|dbj|BAE60963.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870227|gb|EIT79413.1| transcription initiation factor TFIIIB, Brf1 subunit [Aspergillus
oryzae 3.042]
Length = 734
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 141/495 (28%), Positives = 233/495 (47%), Gaps = 46/495 (9%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
+ Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 124 INQLARALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 181
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 125
IDF++ L INV++LG Y L + L + ++ +DP +++F +L G +V
Sbjct: 182 IDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAKQLEFGAATMQVA 241
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 242 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRL 301
Query: 186 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 244
EF T+SG LT++ F + + E H+ + G K S + +T L
Sbjct: 302 NEFGATESGELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSFKRRPTETAADIEGDL 359
Query: 245 CRSC--------YEEFMTISEGLEGGADP--PAFQVAERERMVKASAEENSSFERESDSP 294
+ ++ ++G + P PA A+ ER + ++ E+ ++P
Sbjct: 360 TDAATTPSNIAPQQQKRVDADGFAIPSLPIDPALIAADGERRMSTTSVESEIAPEVGENP 419
Query: 295 FM--------SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD 346
S+ + +P P+ I + + + +G + +++TT
Sbjct: 420 GKPARGRPKGSKARPLPTPTPDQIASEEALENEMTAYLTKGSNM----IESTTVPRKAVS 475
Query: 347 NFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 400
++ID D EV L + E K+ IW N++YL Q AK A K ALE
Sbjct: 476 ESAEIDEAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRALEE 530
Query: 401 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 460
+ + G+ ++ V + + + + S PA EATRRML ++
Sbjct: 531 A--DSQPGMHKPRKRRRGRLGDVTYLQGDGEDGDGRSTRASTPA----EATRRMLERRGF 584
Query: 461 SSKINYDVLEKLFDD 475
S KINY +LE LF +
Sbjct: 585 SKKINYRLLESLFGE 599
>gi|395504300|ref|XP_003756493.1| PREDICTED: transcription factor IIIB 90 kDa subunit, partial
[Sarcophilus harrisii]
Length = 619
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 114/174 (65%), Gaps = 6/174 (3%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 51 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 110
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 111 ELCINAPA-----IDPCLYIPRFAHMLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 165
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
LCGAAL V+A H + + +++++V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 166 LCGAALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 219
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 299 VDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG 358
+D ++ P E++ P E + + + DG + + IDD E+D
Sbjct: 342 IDPIKPPALETLLGPLPTAASLGITESIRECISPQNREPNENSGDGELDLNGIDDSEIDR 401
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
Y+ NE E K +W + + +Y++EQ KEA A K EL
Sbjct: 402 YILNENEAQIKAELWMKEHADYVKEQKEKEARIAKEK------------------ELGIY 443
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++++ + A TA EA +ML +K++SSKINY+VL L
Sbjct: 444 ---------KEHKPKKSSKKREPIQASTAGEAIEKMLEQKKISSKINYNVLRDL 488
>gi|403412356|emb|CCL99056.1| predicted protein [Fibroporia radiculosa]
Length = 715
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 127/197 (64%), Gaps = 11/197 (5%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 66
++Q+ NA+++ E + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 115 IQQVANAMHLSEV--VCLSATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYML 172
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 124
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F LL G++ +V
Sbjct: 173 IDFSDMLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYVSRFA-ALLEFGDETHQV 226
Query: 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
A ++A RDW+T GR+P+G+CGA L ++A + + S ++IV++V I + TL KR
Sbjct: 227 ALDATRLVARFDRDWMTRGRRPAGICGACLLLAARMNNFRRSVAEIVQVVKIADTTLKKR 286
Query: 185 LIEFENTDSGSLTIEDF 201
L EF T SG+LT+ DF
Sbjct: 287 LDEFRRTPSGALTLADF 303
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 28/134 (20%)
Query: 344 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 403
G D +D+ E+D ++ EEE K+ +W E+N++YLE AA+E
Sbjct: 504 GDDELLGLDEDELDQFILTEEEVRIKERVWVELNKDYLEAIAAREER------------- 550
Query: 404 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RLS 461
Q A++ + K RK + R A S P+ + + + R L KK + S
Sbjct: 551 ------QHAEDKEKSGG---RKRRKTSNKPRDA----STPSGSTVAESVRNLIKKNPKYS 597
Query: 462 SKINYDVLEKLFDD 475
+INYD L+ LF D
Sbjct: 598 KRINYDALKNLFVD 611
>gi|328871796|gb|EGG20166.1| TATA box-binding protein-associated factor [Dictyostelium
fasciculatum]
Length = 750
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 121/191 (63%), Gaps = 6/191 (3%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
A +G D + + R Y A+ FTKGR T+ V A+CLY CR++ P LLIDFS +
Sbjct: 85 AGQVGLKDVHIDMGVRLYETAMDFKFTKGRSTQIVSATCLYTVCRRELTPHLLIDFSEAI 144
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 132
+NV+ L + +L+ Q L L VDP++F+ +F L ++V +TA ++
Sbjct: 145 QLNVFVLASTFLKFIQTLGFQ-----LPLVDPALFIQRFAVGLEFEQKTQEVANTALKLV 199
Query: 133 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 192
A MKRDW++ GR+PSG+CGA+L+++A HG K + +IV++V I E T++KRL EF++T
Sbjct: 200 ARMKRDWMSIGRRPSGICGASLFIAAKIHGFKRTVKEIVQVVKIGEDTIIKRLKEFKDTP 259
Query: 193 SGSLTIEDFMA 203
S +LTI++F A
Sbjct: 260 SAALTIDEFDA 270
>gi|403223081|dbj|BAM41212.1| transcription factor IIIb subunit [Theileria orientalis strain
Shintoku]
Length = 520
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 129/218 (59%), Gaps = 10/218 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ + + +++++ + L + S++ V AKR Y +AV RNFT GR V + CLY CR++
Sbjct: 79 INRGYHNIQRIADYLRL--SEQHVEAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRRE 136
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P LLIDFS+ L V +G ++++L ++L+I+ + VDPSIF +F +L L
Sbjct: 137 KTPHLLIDFSDILQTPVKTIGQIFMKLVRMLHIS-----VPNVDPSIFFERFATQLHLKD 191
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+K+ T I+ +M RDWI TGR+P+GLCGAAL V+A HG+ S + +V I
Sbjct: 192 NIQKIIVTGNRIIQAMNRDWICTGRRPTGLCGAALVVAARFHGIHLSAEAVSSVVRISHP 251
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 217
T++KRL EF+ T + L + +F K +L NLP
Sbjct: 252 TILKRLSEFKETSTAHLKVSEF--DKVDLESLPKLNLP 287
>gi|241730148|ref|XP_002412272.1| transcription initiation factor IIB, putative [Ixodes scapularis]
gi|215505511|gb|EEC15005.1| transcription initiation factor IIB, putative [Ixodes scapularis]
Length = 619
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 121/203 (59%), Gaps = 8/203 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++KA + Q+ L + + + A FY +A+ R+ T+GRR V A+C+Y+ CR +
Sbjct: 85 LQKARRKIVQVAERLRLNQ--HCIDTAFNFYKMALTRHLTRGRRHSHVVAACIYMVCRIE 142
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P +L+D S+ + +NVYELG +L+L L I + +DP +++ +F L
Sbjct: 143 GTPHMLLDLSDVVQVNVYELGKTFLKLSSALCIN-----IPAIDPCLYIVRFAHHLEFAD 197
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + D+V++V +CE
Sbjct: 198 KTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLVASRLHDFSRTIKDLVRVVKVCET 257
Query: 180 TLMKRLIEFENTDSGSLTIEDFM 202
T+ KRL EF +T S LT+E+FM
Sbjct: 258 TIRKRLTEFGDTPSSRLTLEEFM 280
>gi|340372189|ref|XP_003384627.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Amphimedon queenslandica]
Length = 649
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 113/180 (62%), Gaps = 6/180 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ +A F+ +A+ N T+GR++ + +CLYL CR + P +L+DFS+ L INVY LG
Sbjct: 84 IDMAFGFFKMALQLNLTRGRKSSIMDTACLYLVCRSEGTPHMLLDFSDVLQINVYSLGRA 143
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITT 142
YL+L L+I + +DP +++H+F +L G V TA ++A MKRDWI
Sbjct: 144 YLRLSTALHINPPA-----LDPCLYIHRFAHKLELGDKVHDVSMTALRLVARMKRDWIHH 198
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+GLCGAAL V+A H S I KIV + EAT+ KRL +F+NT S LTIE+F+
Sbjct: 199 GRRPAGLCGAALLVAARLHNFNRSVKQISKIVKLSEATIRKRLDDFQNTPSSCLTIEEFL 258
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 347 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 406
+ IDD E++ L +EEE K +W N ++L+E + +K SY N
Sbjct: 385 DLEGIDDEEIEQMLLSEEEVKIKSQLWFAENGDFLKEMEGPQLLNYFSK-----SYMN-- 437
Query: 407 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 466
+ + LAA A K + + + PA TA EA RML +K+LSSKINY
Sbjct: 438 PTIARKERLAAVEAKKEGNKGKRTVHRPKKDRTHQSPAATAGEAIERMLVEKKLSSKINY 497
Query: 467 DVLEKL 472
DVL L
Sbjct: 498 DVLRDL 503
>gi|156100339|ref|XP_001615897.1| transcription factor IIIb subunit [Plasmodium vivax Sal-1]
gi|148804771|gb|EDL46170.1| transcription factor IIIb subunit, putative [Plasmodium vivax]
Length = 826
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 123/202 (60%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K + +++++ + L++ S + V A+R Y +A+ RNFT GR V ASCLY CR++
Sbjct: 82 LQKGYINIQKIADHLHL--STQHVEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRRE 139
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P +LIDFS+ L V LG +L+L ++L+I+ + +DPS++L +F +L L
Sbjct: 140 KSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNIDPSLYLERFAHKLNLKN 194
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
KV T ++ +M RDWI TGR+P+GLCGAAL +S HG+ + I IV I
Sbjct: 195 AIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGIFIHSNTIANIVRISNP 254
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T++KRL EF+NT + + DF
Sbjct: 255 TIIKRLSEFKNTSTAKMKAADF 276
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 29/146 (19%)
Query: 334 GVDATTEAS--DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 391
GVD ++AS +++ SD D E++ + +E+E+ K +IW++M + Y + +
Sbjct: 702 GVDIPSDASLEQLNESLSDFYDSEIENIILSEKERKRKMLIWDDMMKSYFPQYYKQLKKQ 761
Query: 392 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPA--QTALE 449
+++ P+ + A EK +K+ + + P QT +
Sbjct: 762 KKKRSSYH------PDRVGA-----------------EKSRKKKKKENDDHPLDEQTTGD 798
Query: 450 ATRRMLTK--KRLSSKINYDVLEKLF 473
+ L K K +S+K+NYDVL+ LF
Sbjct: 799 SVIMALEKSDKSMSTKMNYDVLKSLF 824
>gi|221059469|ref|XP_002260380.1| transcription factor IIIb subunit [Plasmodium knowlesi strain H]
gi|193810453|emb|CAQ41647.1| transcription factor IIIb subunit, putative [Plasmodium knowlesi
strain H]
Length = 850
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 123/202 (60%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K + +++++ L++ S + V A+R Y +A+ RNFT GR V ASCLY CR++
Sbjct: 82 LQKGYINIQKIAEHLHL--STQHVESAQRIYLMALQRNFTMGRNNSYVAASCLYTICRRE 139
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P +LIDFS+ L V LG +L+L ++L+I+ + +DPS++L +F +L L
Sbjct: 140 KSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNIDPSLYLERFAHKLNLKN 194
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
KV T ++ +M RDWI TGR+P+GLCGAAL +S HG+ + I IV I
Sbjct: 195 DIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGIFVHSNTIANIVRISNP 254
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T++KRL EF+NT + + + DF
Sbjct: 255 TIIKRLSEFKNTSTAKMKVSDF 276
>gi|444705816|gb|ELW47205.1| Transcription factor IIIB 90 kDa subunit [Tupaia chinensis]
Length = 620
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 143/469 (30%), Positives = 217/469 (46%), Gaps = 80/469 (17%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 64 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 123
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 124 ELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSG 178
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM------ 202
LCGAAL V+A H + + ++V +V +CE+TL KRL EFE+T + LTIE+FM
Sbjct: 179 LCGAALLVAARMHDFRRTVKEVVSVVKVCESTLRKRLTEFEDTPTSQLTIEEFMRIDLEE 238
Query: 203 -------------ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 249
R K+L + ++ L ++S + + + +P A G
Sbjct: 239 ECDPPSYTAGQKKQRMKQLEQVLSKQLEEVEGEISSYQDEIEIELENSRPRAKG------ 292
Query: 250 EEFMTISEGLEGGADPPAF--QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEP 307
+ +G A AF + E E + A++ N F +E + R +
Sbjct: 293 -PLPGLKDGSTEDATSSAFGDEDPEDEELEAAASHLNKDFYQE-----LLRGGSAMG-DS 345
Query: 308 ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNE 363
E+ GVP A + G D + + G D + DG + S IDD E+D H
Sbjct: 346 EATGVPDETCRPPALDLGISDSIRECIASQGRDPKDTSGDGELDLSGIDDLEIDRVSHR- 404
Query: 364 EEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAV 423
+ R + +A KEA A K EL
Sbjct: 405 --------VGAPGPRSQPQLRAEKEARIAKEK------------------ELGVY----- 433
Query: 424 AKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++ + + A TA EA +ML +KR+SSKI+Y VL L
Sbjct: 434 ----KEHKPKKSGKRREPILASTAGEAIEKMLEQKRISSKIDYSVLRGL 478
>gi|326921138|ref|XP_003206821.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Meleagris
gallopavo]
Length = 737
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 113/174 (64%), Gaps = 6/174 (3%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 170 FFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 229
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 230 ELCINAPA-----IDPCLYIPRFAHMLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSG 284
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
LCGAAL V+A H + + +++++V +CE+TL KRL EFE T + LTI++FM
Sbjct: 285 LCGAALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFEYTPTSQLTIDEFM 338
>gi|341899796|gb|EGT55731.1| CBN-BRF-1 protein [Caenorhabditis brenneri]
Length = 734
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 183/392 (46%), Gaps = 75/392 (19%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
++ A F+ + V+RN T+GR V A CLY+ CR ++ LL+DFS+ INV++LG
Sbjct: 102 MNTAFNFFKMCVSRNLTRGRNRSSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRN 161
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 142
+ + L I L DP +++ +F L G +K V + A ++ MKRDW++T
Sbjct: 162 LNFISRALRIN-----LPSTDPCLYIMRFACVLDFGDRQKEVVNLATRLVQRMKRDWMST 216
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+G+CGAAL ++A + S SDIV++VHI E+ + KRL EF T SGSLTI++F
Sbjct: 217 GRRPTGICGAALLIAARSMNFNRSISDIVRVVHISESVIRKRLDEFSQTPSGSLTIDEFS 276
Query: 203 ---------------ARKKELHEGVAANLPNNGPKVSGMNEVLC--------------KH 233
AR+K E L + M + L K
Sbjct: 277 TVDLEHSEDPPAYREARRKAREE----QLRKEAEQADAMRDQLGEMEADVEAALDKKRKE 332
Query: 234 KDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKA---SAEENSSFERE 290
K + PFA IS GL + AE E MV+ ++ ++ E
Sbjct: 333 KFSKSPFA-----------KLISGGL-------GLEYAEAEEMVRKDVIASVMKAAEEEP 374
Query: 291 SDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSD 350
S M + DK + P ES+G+ ++ T TA E T+ P +D E
Sbjct: 375 CSSNTMEKFDKYR-PSLESLGIRRSVDTPTA----EHRSTEIPIIDLEDE---------- 419
Query: 351 IDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 382
I D E+D Y+ E E K W + N E ++
Sbjct: 420 ISDTEIDSYILTESEVAIKTDYWMKANGEVMK 451
>gi|301787049|ref|XP_002928941.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Ailuropoda melanoleuca]
Length = 863
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 123/203 (60%), Gaps = 8/203 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ + + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR +
Sbjct: 272 LQNGRRQIHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTE 329
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P +L+D S+ L +NVY LG +L L + L I + +DP +++ +F L G
Sbjct: 330 GTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGD 384
Query: 121 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+
Sbjct: 385 KNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCES 444
Query: 180 TLMKRLIEFENTDSGSLTIEDFM 202
TL KRL EFE+T + LT+++FM
Sbjct: 445 TLRKRLTEFEDTPTSQLTVDEFM 467
>gi|118092254|ref|XP_421405.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Gallus gallus]
Length = 681
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 121/196 (61%), Gaps = 8/196 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 94 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 151
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 152 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFGDKNHEVSM 206
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++++V +CE+TL KRL
Sbjct: 207 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLT 266
Query: 187 EFENTDSGSLTIEDFM 202
EFE T + LTI++FM
Sbjct: 267 EFEYTPTSQLTIDEFM 282
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 64/130 (49%), Gaps = 27/130 (20%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
DG + S IDD E+D Y+ NE E K +W + N +YL+EQ KEA A K
Sbjct: 449 DGELDLSGIDDSEIDRYILNETEAQIKAELWMKENADYLKEQKEKEARIAKEK------- 501
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSS 462
EL KE + K+AA+ + A TA EA +ML +K++SS
Sbjct: 502 -----------ELGIY---------KEHKPKKAAKKREPIQASTAGEAIEKMLEQKKISS 541
Query: 463 KINYDVLEKL 472
KINY+VL L
Sbjct: 542 KINYNVLRDL 551
>gi|194743354|ref|XP_001954165.1| GF16885 [Drosophila ananassae]
gi|190627202|gb|EDV42726.1| GF16885 [Drosophila ananassae]
Length = 665
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 137/481 (28%), Positives = 223/481 (46%), Gaps = 93/481 (19%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM-- 202
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFNRTLLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMTV 284
Query: 203 -------------ARKK--------------ELHEGVAANLPNN-GPKVSGMNEVLCKHK 234
ARKK EL + + A+L + G + + + L K
Sbjct: 285 DLEREQDPPSFKAARKKDRERIKDIGEQELTELQKQIDAHLEKDLGKYANSVFQKLAHGK 344
Query: 235 DTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSP 294
T + +S E + + E + F ++K +++ ++
Sbjct: 345 STTITSSPSTPKSISENELEMEESRQ-------FIEQSNAEVIKDLIDKDEGVKKVEPGG 397
Query: 295 FMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDF 354
+S ++ ++ P+ E+I C T S+ + + TK P TE N ++D +
Sbjct: 398 LVSGIEGLR-PDIEAI-----CRV-TQSDLEDVERTKAP---QETELFIEDLNDDELDQY 447
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 414
+ EEE K +W+ +N EYL EQ +E
Sbjct: 448 -----VLTEEEAVSKLDMWKNLNAEYLREQQERE-------------------------- 476
Query: 415 LAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINYDVLEK 471
+AK R+E + +R GP+ TA EA +ML +K++SSKINY++L+
Sbjct: 477 ------ERLAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINYEILKT 530
Query: 472 L 472
L
Sbjct: 531 L 531
>gi|431839340|gb|ELK01267.1| Transcription factor IIIB 90 kDa subunit [Pteropus alecto]
Length = 823
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 258 FFKMAVSKRLTRGRKMAHVVAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 317
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 318 ELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSG 372
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 373 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 426
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 583 DPKDASGDGELDLSGIDDLEIDRYILNEAEARVKAELWMRENAEYLREQREKEARIAKEK 642
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
EL KE + K++ + + A TA EA +ML
Sbjct: 643 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAGEAIEKML 675
Query: 456 TKKRLSSKINYDVLEKL 472
+KRLSSKI+Y VL L
Sbjct: 676 EQKRLSSKIDYSVLRGL 692
>gi|294949376|ref|XP_002786166.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
gi|239900323|gb|EER17962.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
Length = 597
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 118/177 (66%), Gaps = 3/177 (1%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
AKR + +A RNFT GR+T V A+CLY+ CR+ P+LLIDFS+ L+I+V E+G +Y++
Sbjct: 104 AKRLFSLAAQRNFTAGRKTSVVAAACLYIVCRRDRTPYLLIDFSDVLHISVREIGQMYMK 163
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRK 145
L ++L + D+ + +DPS+F+ +F+ L G + +V TA ++ M RDWI TGR+
Sbjct: 164 LVRLLSL-DKVLDIPVIDPSMFMERFSSHLGLGDKQNQVVHTAIRLIQLMSRDWICTGRR 222
Query: 146 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
P+GLCGAAL ++A HG++ + + + +V I TL +RL E ++T + +LT E F
Sbjct: 223 PTGLCGAALLIAARYHGVEDVTANSVAGVVRIGAVTLKRRLYELKHTPTAALTTEQF 279
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 24/130 (18%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
++ SD+ D E++GYL EE K IW + N+ YL E A ++ A + A + + +N
Sbjct: 488 ESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKRRAEDEAKRNG 547
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RLSSK 463
K +KR + GPA +ALEAT+ L+KK LS++
Sbjct: 548 ----------------------TYKPRKRPIHSAPMGPADSALEATQMALSKKARSLSNR 585
Query: 464 INYDVLEKLF 473
+N LE+LF
Sbjct: 586 VNMSALEELF 595
>gi|345804203|ref|XP_548005.3| PREDICTED: transcription factor IIIB 90 kDa subunit [Canis lupus
familiaris]
Length = 812
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 121/196 (61%), Gaps = 8/196 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 228 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 285
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 286 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 340
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 341 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 400
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LT+++FM
Sbjct: 401 EFEDTPTSQLTVDEFM 416
>gi|354473188|ref|XP_003498818.1| PREDICTED: hypothetical protein LOC100753600 [Cricetulus griseus]
Length = 1450
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 887 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 946
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 947 ELCIN-----APAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 1001
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 1002 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 1055
>gi|348527462|ref|XP_003451238.1| PREDICTED: transcription factor IIIB 90 kDa subunit, partial
[Oreochromis niloticus]
Length = 606
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 6/177 (3%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A FY +A+ ++ T+GR+ V A+C+Y+ CR + P +L+D S+ L +NVY LG +L
Sbjct: 21 ALNFYKMALIKHLTRGRKASHVIAACIYMVCRTEGTPHMLLDLSDILQVNVYVLGRTFLV 80
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRK 145
L + L I + +DP +++ +F L G ++V TA ++ MKRDW+ TGR+
Sbjct: 81 LARELCINAAA-----IDPCLYIPRFAQMLEFGDKTREVSMTALRLVQRMKRDWMHTGRR 135
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
PSGLCGAAL V+A H + + +IV IV +CE+TL KRL EFE+T + LTIE+FM
Sbjct: 136 PSGLCGAALLVAARLHDFRRTVKEIVNIVKVCESTLRKRLTEFEDTPTSQLTIEEFM 192
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 27/132 (20%)
Query: 341 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 400
A G + S I+D E++ YL +++E K +W N YL+EQ KEA A K
Sbjct: 372 ADSGELDLSGINDSEIELYLLSDKEVKIKTALWMAENSTYLKEQKEKEAKIAKEK----- 426
Query: 401 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 460
A + K RK + R A TA EA +ML +KR+
Sbjct: 427 -------------------ALGIYKERKPRGPNRKHPPIR---ANTADEAIEKMLEQKRI 464
Query: 461 SSKINYDVLEKL 472
SSKINYDVL+ L
Sbjct: 465 SSKINYDVLKDL 476
>gi|358054427|dbj|GAA99353.1| hypothetical protein E5Q_06048 [Mixia osmundae IAM 14324]
Length = 636
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 123/197 (62%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
MR++ N+L+I E + A R++ +A+ F +GR+T+ V A+CLYLACR +LI
Sbjct: 94 MRELANSLSIEE--RVTDAASRWFTLAIHSTFNRGRKTDHVVAACLYLACRHNKMTLMLI 151
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCD 126
DFS+ L +NV+ LG YL+L + L +++ + VDPSI++ +F L G + +V
Sbjct: 152 DFSDLLQVNVFVLGQTYLKLVKNLNMSER---VPLVDPSIYIQRFAALLEFGKDTTQVSL 208
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A ++ M RDW+ TGR+P+G+CGAAL ++A + + + ++ ++V I + TL KRL
Sbjct: 209 DASRLIQRMDRDWMLTGRRPAGVCGAALVIAARMNDYRRTLLEVTQVVKIADITLRKRLD 268
Query: 187 EFENTDSGSLTIEDFMA 203
EF T S LT+E+F A
Sbjct: 269 EFRQTQSSDLTVEEFRA 285
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 32/137 (23%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
D + + SD+D+ E+D Y+ + ++ K +W NR+YLE AAK+
Sbjct: 459 DAAGSLSDLDEDELDEYILSAADREAKTRLWITFNRDYLENAAAKQ-------------- 504
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSR-KEKQQKRAAEAKNSG-PAQTALEATRRML-TKKR 459
+N E K R K + +KR E + G PA TA EA ML +KKR
Sbjct: 505 RNADEE---------------GKPRPKPRARKRKKEEDSPGLPAATAGEAATIMLQSKKR 549
Query: 460 LSSKINYDVLEKLFDDS 476
+S K+NYDV+ +L ++
Sbjct: 550 VSKKLNYDVVSRLLQET 566
>gi|363753818|ref|XP_003647125.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890761|gb|AET40308.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
Length = 577
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 125/195 (64%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + +AL I E + A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 90 LRAVSHALQIPEY--VTDAAFQWYKLALAYNFVQGRRSQNVIASCLYVACRKEKTHHMLI 147
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L+L + L+I D L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVSVYSIGATFLKLVKALHITD----LPLADPSLFIQHFAEKLDLGDKKIKVVK 203
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA L ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 204 DAVKLAQRMSKDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAVSHVAEETLQQRLN 263
Query: 187 EFENTDSGSLTIEDF 201
EF+NT+SG L+I+ F
Sbjct: 264 EFKNTNSGKLSIKQF 278
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
++ SD +N D+DD E++ ++ +EE K+ IW +N EYL EQ +K A A+
Sbjct: 442 SKVSDDPENLEDVDDDELNAHILDEEAFRLKERIWIGINGEYLLEQESKRLKQEADLASG 501
Query: 399 EASYKNCPEGLQA------AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 452
S K G Q ++L A ++ + + E T ++ +
Sbjct: 502 NTSLKKRRGGKQKRNKPPIIRDLPPGALLVADETGIQSVLQAVQEP-------TTADSVK 554
Query: 453 RMLTKKRLSSKINYDVLEKLF 473
ML K S KINYD ++ LF
Sbjct: 555 NMLQKTSFSKKINYDAIDGLF 575
>gi|429240773|ref|NP_596265.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe 972h-]
gi|395398538|sp|Q9P6R0.2|TF3B_SCHPO RecName: Full=Transcription factor IIIB 60 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1; AltName: Full=TFIIB-related factor
gi|347834355|emb|CAB89885.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe]
Length = 492
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/469 (26%), Positives = 220/469 (46%), Gaps = 99/469 (21%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A R++ +A+ NF KGRR++ V ASCLY+ CR +LIDFS+ L INV++LG+
Sbjct: 103 IEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGST 162
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 142
+L+LC+VL L +DPS+++ +F L G +V + A ++A M RDW+
Sbjct: 163 FLKLCRVLRPN-----LPLLDPSLYISRFASLLEFGPETHRVANDAIRLVARMNRDWMQI 217
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+G+CGA L ++A + + S ++V +V + + T+ KRL EF+ T+SG L+I DF
Sbjct: 218 GRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADITIQKRLDEFKLTESGDLSIADF- 276
Query: 203 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 262
R+ + E G
Sbjct: 277 -------------------------------------------RNIWLE---------GQ 284
Query: 263 ADPPAFQVAERERMVKASAEENSSFERESDSPF---------------MSRVDKVQSPE- 306
+DPP+F ++ + A N +E SP +S+ KV+S E
Sbjct: 285 SDPPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQET 344
Query: 307 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEK 366
P + + + + +GD + + + S+ D+DD E++ L +++E
Sbjct: 345 PVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEI 404
Query: 367 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 426
K +W E+N++YL E+ AK L+ ++L + +
Sbjct: 405 LTKTQVWMELNKDYLAEEEAK--------------------NLKLQEDL----KKGIVRQ 440
Query: 427 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 475
+++++ R ++ + G A TA E+ + M+ ++ S KINY+ L+ LFD+
Sbjct: 441 PRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489
>gi|417403827|gb|JAA48700.1| Putative transcription initiation factor tfiiib brf1 subunit
[Desmodus rotundus]
Length = 676
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 6/174 (3%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 228 LCGAALLVAARMHDFRRTIKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 281
>gi|410079855|ref|XP_003957508.1| hypothetical protein KAFR_0E02200 [Kazachstania africana CBS 2517]
gi|372464094|emb|CCF58373.1| hypothetical protein KAFR_0E02200 [Kazachstania africana CBS 2517]
Length = 576
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 130/202 (64%), Gaps = 7/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A +R + +AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 83 LKNARRKLRAVSHALSIPEY--ITDAAFQWYKLALAHNFVQGRRSQNVIASCLYVACRKE 140
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+LIDFS+ L ++VY +GA +L++ + L+IA+ L DPSIF+ F ++L G
Sbjct: 141 KTHHMLIDFSSRLQVSVYSIGATFLKMVKKLHIAE----LPLADPSIFIQHFAEKLELGD 196
Query: 121 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K KV A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E
Sbjct: 197 KKIKVVKDAVKLAQRMSNDWMFEGRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHVAEE 256
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
TL KRL EF++T++G L+IE+F
Sbjct: 257 TLQKRLNEFKHTNAGKLSIEEF 278
>gi|294914332|ref|XP_002778249.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239886452|gb|EER10044.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 564
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 118/177 (66%), Gaps = 3/177 (1%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
AKR + +A RNFT GR+T V A+CLY+ CR+ P+LLIDFS+ L+++V E+G +Y++
Sbjct: 88 AKRLFSLAAQRNFTAGRKTSVVAAACLYIVCRRDRTPYLLIDFSDVLHVSVREIGQMYMK 147
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRK 145
L ++L + D+ + +DPS+F+ +F+ L G + +V TA ++ M RDWI TGR+
Sbjct: 148 LVRLLSL-DKVLDIPVIDPSMFMERFSSHLGLGDKQNQVVHTAIRLIQLMSRDWICTGRR 206
Query: 146 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
P+GLCGAAL ++A HG++ + + + +V I TL +RL E ++T + +LT E F
Sbjct: 207 PTGLCGAALLIAARYHGVENVTANSVAGVVRIGAVTLKRRLYELKHTPTAALTTEQF 263
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
D ++ SD+ D E++GYL EE K IW + N+ YL E A ++ A K A + +
Sbjct: 452 DDEESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKKRAEDEAK 511
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RL 460
+N K +KR + GPA +ALEAT+ L+KK L
Sbjct: 512 RNG----------------------TYKPRKRPVPSTAMGPADSALEATQMALSKKARSL 549
Query: 461 SSKINYDVLEKLF 473
S+++N LE+LF
Sbjct: 550 SNRVNMSALEELF 562
>gi|238489759|ref|XP_002376117.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
gi|220698505|gb|EED54845.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
Length = 1098
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 227/495 (45%), Gaps = 63/495 (12%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
+ Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 146 INQLARALNIPESAS--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 203
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 125
IDF++ L INV++LG Y L + L + ++ +DP +++F +L G +V
Sbjct: 204 IDFADVLMINVFKLGRTYKALLEELRLGGNVFLMNPIDPESLIYRFAKQLEFGAATMQVA 263
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 264 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRL 323
Query: 186 IEFENTDSGSLTIEDFMARKKE-LHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGL 244
EF T+SG LT++ F + + E H+ + G K S + +T L
Sbjct: 324 NEFGATESGELTVDQFRSVQLENAHDPPSFTRAREGRKPS--RSFKRRPTETAADIEGDL 381
Query: 245 CRSCY--------EEFMTISEGLEGGADP--PAFQVAERERMVKASAEENSSFERESDSP 294
+ ++ ++G + P PA A+ ER + ++ E+ ++P
Sbjct: 382 TDAATTPSNIAPQQQKRVDADGFAIPSLPIDPALIAADGERRMSTTSVESEIAPEVGENP 441
Query: 295 FM--------SRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD 346
S+ + +P P+ I + + + +G + +++TT
Sbjct: 442 GKPARGRPKGSKARPLPTPTPDQIASEEALENEMTAYLTKGSNM----IESTTVPRKAVS 497
Query: 347 NFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 400
++ID D EV L + E K+ IW N++YL Q AK A K ALE
Sbjct: 498 ESAEIDEAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRALEE 552
Query: 401 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 460
A S+ + R S A T EATRRML ++
Sbjct: 553 -----------------------ADSQPGMHKPRKRRRGRSTRASTPAEATRRMLERRGF 589
Query: 461 SSKINYDVLEKLFDD 475
S KINY +LE LF +
Sbjct: 590 SKKINYRLLESLFGE 604
>gi|307344666|ref|NP_001182550.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 665
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 123/196 (62%), Gaps = 7/196 (3%)
Query: 9 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 91 RQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + + +++++V +CE+TL KRL
Sbjct: 206 TALRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHDFRRTIKEVIRVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LTI++FM
Sbjct: 266 EFEDTPTSQLTIDEFM 281
>gi|336381997|gb|EGO23148.1| hypothetical protein SERLADRAFT_371381 [Serpula lacrymans var.
lacrymans S7.9]
Length = 593
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 10/184 (5%)
Query: 22 EIVHVA-KRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYE 79
E+V +A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+E
Sbjct: 137 EVVSLAATRLYTLAVEHKFTKGRKSLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFE 196
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKR 137
LG YLQL Q L + L VDPS ++ +F LL G + KV A ++ R
Sbjct: 197 LGHTYLQLVQTLNLK-----LPLVDPSHYISRFA-ALLEFGEETHKVATDAVRLVQRFDR 250
Query: 138 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 197
DW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KRL EF+ T SG+LT
Sbjct: 251 DWMTRGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADTTLKKRLDEFKKTPSGALT 310
Query: 198 IEDF 201
+ DF
Sbjct: 311 LADF 314
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 42/131 (32%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D +D+ E+D +L +EE K+ +W E+NREYLE
Sbjct: 422 DELQGLDEEELDRFLLTDEEVRIKERVWVELNREYLE----------------------- 458
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 464
A+A RK+ K + SG TA E+ R ++ K + S +I
Sbjct: 459 ----------------AIAAKRKKTNNKPRDASTPSG--STAAESVRNLIKKNPKYSKRI 500
Query: 465 NYDVLEKLFDD 475
NYD L+ LF D
Sbjct: 501 NYDALKDLFMD 511
>gi|345568504|gb|EGX51397.1| hypothetical protein AOL_s00054g96 [Arthrobotrys oligospora ATCC
24927]
Length = 589
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 123/196 (62%), Gaps = 10/196 (5%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ Q+ +AL++ D V A R++ +AV NF +GR+T+ V A CLY+ACR +LI
Sbjct: 91 LNQLASALSV--HDRFVETAARYFTLAVTHNFIQGRKTQHVVACCLYIACRLDKSAHMLI 148
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVC 125
DFS+ L +NV+ LG+ YL+L + L + + Q+DP +++ +F R L G+K +VC
Sbjct: 149 DFSDILQLNVFSLGSTYLKLVKTLNLN-----IPQLDPELWIRRFA-RHLEFGDKTQQVC 202
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDWI GR+P+G+CGAA+ ++A + + + +++V IV + T+ KRL
Sbjct: 203 RDAIKIVQRMDRDWIMEGRRPAGVCGAAIIIAARMNNFRRTVTEVVYIVKVAGMTINKRL 262
Query: 186 IEFENTDSGSLTIEDF 201
EF+NT S LT+ +F
Sbjct: 263 EEFKNTKSSELTVSEF 278
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 73/174 (41%), Gaps = 24/174 (13%)
Query: 303 QSP-EPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 361
+SP E E + + N TQTA + + + + + S DN D+DD E++ +
Sbjct: 435 KSPLEAEILALINNPETQTAVEDIRRERLRQQALLPPSTVSADPDNLEDVDDDEIESVMM 494
Query: 362 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 421
+ EE K IW E NREYL Q AK A A + A G+ A
Sbjct: 495 SPEEVALKTKIWYEYNREYLLTQEAKRLKAEADEKA----------GIGKKARKKRGKAK 544
Query: 422 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 475
S + PA A EA R M+ KK S KINY L+ LF+D
Sbjct: 545 PRDSSFPDM------------PASPA-EAAREMMKKKTFSRKINYAALDSLFED 585
>gi|94732974|emb|CAK11391.1| novel protein (zgc:63497) [Danio rerio]
Length = 606
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 8/175 (4%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ + V+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 25 FFKMVVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLAR 84
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPS 147
L I + VDP +++ +F +L G K +V TA +L MKRDW+ TGR+PS
Sbjct: 85 ELCINAPA-----VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPS 138
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GLCGAAL V+A H + + +++ +V +CEATL KRL EFE T + SLTI++FM
Sbjct: 139 GLCGAALLVAARMHEFRRTVKEVISVVKVCEATLRKRLTEFEETPTSSLTIDEFM 193
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 45/171 (26%)
Query: 305 PEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 361
P S+G+ + C T+T + E + D G + ID+ E++ Y+
Sbjct: 337 PSAASLGLTDSIRQCITETTNVEEKSD--------------SGELDLDGIDEDEIEKYIL 382
Query: 362 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 421
NE E K +W + N EYL EQ KE A K + +YK P+ +E A+
Sbjct: 383 NEIEVEAKTELWMKQNEEYLREQKEKEERIAKEKE--QGTYKEKPKKPSKKREPILAS-- 438
Query: 422 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
TA EA +ML +K++SSKINYDVL L
Sbjct: 439 ------------------------TAGEAIEKMLEQKKISSKINYDVLRDL 465
>gi|193599116|ref|XP_001950065.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Acyrthosiphon pisum]
Length = 491
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 146/497 (29%), Positives = 228/497 (45%), Gaps = 129/497 (25%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
KA ++ + N+LN+ S + + A +Y +A+ R+FT+GR+ + A+ +Y+ACR +
Sbjct: 83 KARRGIQVLSNSLNL--SPQTLENACVYYNMALKRHFTRGRKNALIYAASVYIACRMEGT 140
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
+L+D ++ +N +ELG YL++ Q L + + +DPSIFL +F + L G
Sbjct: 141 MHMLLDVADASEVNAFELGKTYLRMMQTLTLT-----VPSLDPSIFLMRFVNSLDFGDKT 195
Query: 123 KVC-DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+ TA +L M RD I TGR+PS LCGAAL +S H + DI+K+VH ATL
Sbjct: 196 HIVYTTAMRLLQRMMRDSIHTGRRPSSLCGAALLISGRMHDFNRTTDDIIKVVHCHHATL 255
Query: 182 MKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFA 241
KRL+EF++T S L+I
Sbjct: 256 KKRLLEFKDTPSSMLSI------------------------------------------- 272
Query: 242 CGLCRSCYEEFMTISEGLEGGADPPAFQVA---ERERMVKASAEENSSFERESDSPFMSR 298
EEFMT+ LE DPP+++VA ++ER+ K F +DS +
Sbjct: 273 --------EEFMTVD--LEETHDPPSYRVARARDKERIDK--------FFEANDSEKV-- 312
Query: 299 VDKVQSPEPESIGVPKNCTT--------QTASNEGEGDHTKTPGVDATTEASDGSDNFSD 350
+D+V++ + + KN T A + G K V + E S+N
Sbjct: 313 IDEVKTAIEKELSKKKNTTVLGVNLVEIAAAVSPEPGSSCKPVNVGPSLEIMGLSENKRS 372
Query: 351 --------------IDDFEVDGYLHNEEEKHYKKIIWEEMN-REYLEEQAAKEAAAAAAK 395
ID+ E+D Y+ ++E K+ +W +M+ + + Q ++E A
Sbjct: 373 YEEDDEEESMCDVVIDEDEIDSYILSKESHQIKRNMWMKMHGTAFRKMQLSREERA---- 428
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
KN P+ ++A KEK+ K A PA+TA EA R+L
Sbjct: 429 -------KN-PKVIRA----------------KEKKAKNALRT----PAKTAAEAVERVL 460
Query: 456 TKKRLSSKINYDVLEKL 472
KK+LSSKINYD+L+ L
Sbjct: 461 KKKKLSSKINYDILDNL 477
>gi|401396470|ref|XP_003879829.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
gi|325114237|emb|CBZ49794.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
Length = 656
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 7/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ F++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++
Sbjct: 106 LQRGFNNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRE 164
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P LLIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G
Sbjct: 165 RTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGD 219
Query: 121 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI IV +
Sbjct: 220 KTHTVAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGP 279
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ +RL EF+ T + L + DF
Sbjct: 280 TVNRRLQEFKQTATAQLAVADF 301
>gi|170109264|ref|XP_001885839.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639110|gb|EDR03383.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 477
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 127/197 (64%), Gaps = 10/197 (5%)
Query: 9 RQMKNALNIGESDEIVHVA-KRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 66
+++++ NI E+V +A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 84 KKIQSIANILRLSEVVCLAATRMYTLAVEHKFTKGRKSLNVVAVCLYVACRQKETRNYML 143
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 124
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F LL G++ KV
Sbjct: 144 IDFSDLLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFAA-LLEFGDETHKV 197
Query: 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
A ++ RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KR
Sbjct: 198 ATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADTTLKKR 257
Query: 185 LIEFENTDSGSLTIEDF 201
L EF+ T SGSLT+ DF
Sbjct: 258 LDEFKATPSGSLTLADF 274
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 26/129 (20%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D +D+ E+D ++ +E+E K+ +W E+N+EYLE A K + S+ C
Sbjct: 374 DELLGLDEAELDRFILSEDEVRVKERVWVELNKEYLEALAGKSFSEC-------QSFPLC 426
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 464
+GL RK + R A G T E+ R +L K + S +I
Sbjct: 427 LQGLS---------------RRKGNNKPRDASTAAGG---TTAESVRNLLKKNPKYSKRI 468
Query: 465 NYDVLEKLF 473
NYD L+ LF
Sbjct: 469 NYDALKDLF 477
>gi|336369209|gb|EGN97551.1| hypothetical protein SERLA73DRAFT_75218 [Serpula lacrymans var.
lacrymans S7.3]
Length = 785
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 10/184 (5%)
Query: 22 EIVHVA-KRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYE 79
E+V +A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L +NV+E
Sbjct: 239 EVVSLAATRLYTLAVEHKFTKGRKSLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFE 298
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKR 137
LG YLQL Q L + L VDPS ++ +F LL G + KV A ++ R
Sbjct: 299 LGHTYLQLVQTLNLK-----LPLVDPSHYISRFA-ALLEFGEETHKVATDAVRLVQRFDR 352
Query: 138 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 197
DW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KRL EF+ T SG+LT
Sbjct: 353 DWMTRGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADTTLKKRLDEFKKTPSGALT 412
Query: 198 IEDF 201
+ DF
Sbjct: 413 LADF 416
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 27/131 (20%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D +D+ E+D +L +EE K+ +W E+NREYLE AAK
Sbjct: 599 DELQGLDEEELDRFLLTDEEVRIKERVWVELNREYLEAIAAK------------------ 640
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 464
G Q QE + +KSRK K+ ++ TA E+ R ++ K + S +I
Sbjct: 641 --GEQ--QETGTSN----SKSRKRKKTNNKPRDASTPSGSTAAESVRNLIKKNPKYSKRI 692
Query: 465 NYDVLEKLFDD 475
NYD L+ LF D
Sbjct: 693 NYDALKDLFMD 703
>gi|82793708|ref|XP_728148.1| transcription factor IIIb 70 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23484353|gb|EAA19713.1| transcription factor iiib 70 kDa subunit [Plasmodium yoelii yoelii]
Length = 756
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 127/202 (62%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K + +++++ + L++ S++ + A+R Y +A+ RNFT GR V ASCLY CR++
Sbjct: 78 LQKGYINIQKIADNLHL--SNQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRRE 135
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P +LIDFS+ L V LG +L+L ++L+I+ + +DPS+FL +F +L L
Sbjct: 136 KSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNIDPSLFLERFAYKLNLKN 190
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
KV T ++ +M RDWI+TGR+P+GLCGA+L ++ HG+ + + I ++V I
Sbjct: 191 DIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGINVNSNTIAEVVRISNP 250
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T++KRL EF+NT+ + +F
Sbjct: 251 TIIKRLYEFKNTNIAKIKASEF 272
>gi|115530760|emb|CAL49303.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 461
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 123/196 (62%), Gaps = 7/196 (3%)
Query: 9 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 91 RQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGDKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA ++ MKRDW+ TGR+PSGLCGAAL V++ H + + +++++V +CE+TL KRL
Sbjct: 206 TALRLVQRMKRDWMHTGRRPSGLCGAALLVASRMHDFRRTIKEVIRVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LTI++FM
Sbjct: 266 EFEDTPTSQLTIDEFM 281
>gi|124809652|ref|XP_001348643.1| transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
gi|23497541|gb|AAN37082.1|AE014824_1 transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
Length = 748
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 124/202 (61%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K + +++++ + L++ S + + A+R Y +A+ RNFT GR V ASCLY CR++
Sbjct: 92 LQKGYVNIQKIADHLHL--SSQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRRE 149
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P +LIDFS+ L V LG +L+L ++L+I + +DPS+FL +F +L L
Sbjct: 150 KSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHIN-----VPNIDPSLFLERFAHKLNLKN 204
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
KV T ++ +M RDWI+TGR+P+GLCGAAL +S HG+ + + I IV I
Sbjct: 205 DIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGAALLISTRMHGICINSNTIADIVRISNP 264
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T++KRL EF+NT + + +F
Sbjct: 265 TIIKRLAEFKNTSTAQIKASEF 286
>gi|221482805|gb|EEE21136.1| transcription factor IIIB subunit, putative [Toxoplasma gondii GT1]
Length = 675
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 7/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ F++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++
Sbjct: 67 LQRGFNNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRE 125
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P LLIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G
Sbjct: 126 RTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGD 180
Query: 121 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI IV +
Sbjct: 181 KTHTVAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGP 240
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ +RL EF+ T + L + DF
Sbjct: 241 TVNRRLQEFKQTATAQLAVADF 262
>gi|95007308|emb|CAJ20528.1| transcription factor IIIb subunit, putative [Toxoplasma gondii RH]
Length = 644
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 7/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ F++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++
Sbjct: 67 LQRGFNNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRE 125
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P LLIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G
Sbjct: 126 RTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGD 180
Query: 121 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI IV +
Sbjct: 181 KTHTVAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGP 240
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ +RL EF+ T + L + DF
Sbjct: 241 TVNRRLQEFKQTATAQLAVADF 262
>gi|237840591|ref|XP_002369593.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|211967257|gb|EEB02453.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|221503402|gb|EEE29100.1| transcription factor IIIB subunit, putative [Toxoplasma gondii VEG]
Length = 675
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 7/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ F++++ + L + S + + A R Y +A RNFT GRR+ V ++CLY CR++
Sbjct: 67 LQRGFNNIQSIAERLRL-SSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYAICRRE 125
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P LLIDF + L NV LG V+++L +VL++ + VDPS+FL +F ++ G
Sbjct: 126 RTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQ-----VPHVDPSLFLERFACQMQLGD 180
Query: 121 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V T ++ +M RDWI+TGR+P GLCGAAL ++A H + + DI IV +
Sbjct: 181 KTHTVAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAHIVRVSGP 240
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ +RL EF+ T + L + DF
Sbjct: 241 TVNRRLQEFKQTATAQLAVADF 262
>gi|70953761|ref|XP_745961.1| transcription factor IIIb subunit [Plasmodium chabaudi chabaudi]
gi|56526443|emb|CAH75344.1| transcription factor IIIb subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 717
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 125/202 (61%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K + +++++ A N+ S + + A+R Y +A+ RNFT GR V ASCLY CR++
Sbjct: 77 LQKGYINIQKI--ADNLHLSSQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRRE 134
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P +LIDFS+ L V LG +L+L ++L+I+ + +DPS+FL +F +L L
Sbjct: 135 KSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHIS-----VPNIDPSLFLERFAYKLNLKN 189
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
KV T ++ +M RDWI+TGR+P+GLCGA+L ++ HG+ + + I ++V I
Sbjct: 190 DIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGITINSNTIAEVVRISNP 249
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T++KRL EF+NT+ + +F
Sbjct: 250 TIIKRLYEFKNTNIAKIKASEF 271
>gi|449502947|ref|XP_002200378.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Taeniopygia
guttata]
Length = 565
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 112/171 (65%), Gaps = 6/171 (3%)
Query: 33 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKRTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLARELC 60
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCG 151
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHMLEFGDKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 152 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
AAL V+A H + + +++++V +CE+TL KRL EF++T + LTI++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEFQDTPTSQLTIDEFM 166
>gi|41054045|ref|NP_956183.1| transcription factor IIIB 90 kDa subunit [Danio rerio]
gi|38014698|gb|AAH60523.1| Zgc:63497 [Danio rerio]
Length = 693
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 112/175 (64%), Gaps = 8/175 (4%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ + V+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 112 FFKMVVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLAR 171
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPS 147
L I + VDP +++ +F +L G K +V TA +L MKRDW+ TGR+PS
Sbjct: 172 ELCINAPA-----VDPCLYIPRFA-HMLEFGEKTHEVSMTALRLLQRMKRDWMHTGRRPS 225
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GLCGAAL V+A H + + +++ +V +CE TL KRL EFE T + SLTI++FM
Sbjct: 226 GLCGAALLVAARMHEFRRTVKEVISVVKVCETTLRKRLTEFEETPTSSLTIDEFM 280
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 45/171 (26%)
Query: 305 PEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 361
P S+G+ + C T+T + E + D G + ID+ E++ Y+
Sbjct: 424 PSAASLGLTDSIRQCITETTNVEEKSD--------------SGELDLDGIDEEEIEKYIL 469
Query: 362 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 421
NE E K +W + N EYL EQ KE A K + +YK P+ +E A+
Sbjct: 470 NEIEVEAKTELWMKQNEEYLREQKEKEERIAKEKE--QGTYKEKPKKPSKKREPILAS-- 525
Query: 422 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
TA EA +ML +K++SSKINYDVL L
Sbjct: 526 ------------------------TAGEAIEKMLEQKKISSKINYDVLRDL 552
>gi|410898858|ref|XP_003962914.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Takifugu
rubripes]
Length = 591
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 110/174 (63%), Gaps = 6/174 (3%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
FY +A+A++ T+G R V A+C+Y+ CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 86 FYKMALAKHLTRGHRCAHVAAACIYMVCRTEGTPHMLLDLSDVLQVNVYVLGRTFLTLSR 145
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA ++ MKRDW+ TGR+PSG
Sbjct: 146 ELCINAPA-----IDPCLYIPRFAQLLEFGEKNHEVSMTAMRLVQRMKRDWMHTGRRPSG 200
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
LCGAAL V+A H + + +IV +V +CE TL KRL EF +T + LTIE+FM
Sbjct: 201 LCGAALLVAARMHDFRRTTKEIVSVVKVCEQTLKKRLTEFGDTPTSQLTIEEFM 254
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 431 QQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
QQ+ +A + A +A EA +ML +KR+SSKINYDVL+ L
Sbjct: 425 QQRGSARKRAPIRANSADEAIGKMLEQKRISSKINYDVLKDL 466
>gi|393214015|gb|EJC99509.1| hypothetical protein FOMMEDRAFT_160578 [Fomitiporia mediterranea
MF3/22]
Length = 724
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 125/197 (63%), Gaps = 10/197 (5%)
Query: 9 RQMKNALNIGESDEIVHVAK-RFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 66
R+++N + E+V A R Y +A+ FTKGR+ V A CLY+ACRQK ++ ++L
Sbjct: 117 RKIRNVGALMRLSEVVQTAAIRMYTLALEHKFTKGRKNMNVIAVCLYIACRQKETRNYML 176
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 124
IDFS+ L +NV++LG +LQL Q L + L VDPS ++ +F LL G++ KV
Sbjct: 177 IDFSDLLQVNVFDLGHTFLQLVQTLNLR-----LPLVDPSHYIARFA-ALLEFGDETPKV 230
Query: 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
A ++A RDW++ GR+P+G+CGA L ++A + + S ++V++V I + TL KR
Sbjct: 231 AADAVRLVARFDRDWMSRGRRPAGICGACLLLAARMNNFRRSVQEVVQVVKIADTTLKKR 290
Query: 185 LIEFENTDSGSLTIEDF 201
L EF+NT SG+LT+ DF
Sbjct: 291 LDEFKNTPSGALTLADF 307
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 30/117 (25%)
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
+L +EEE K+ +W EMN++YLE AAKEA E +
Sbjct: 511 FLLSEEEVKIKERVWVEMNKDYLEALAAKEA------------------------EKVGS 546
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRMLTKK-RLSSKINYDVLEKLF 473
A K RK + R +S PA TA++A R M+ K + S +INY+ LE LF
Sbjct: 547 APTKTRKKRKTDNKPR----DSSTPAGLTAVDAVRSMIKKSAKYSRRINYEALENLF 599
>gi|365983082|ref|XP_003668374.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
gi|343767141|emb|CCD23131.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
Length = 636
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 130/209 (62%), Gaps = 7/209 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ A +R + +AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++
Sbjct: 83 LNNARRKLRAVSHALSIPEY--ITDAAFQWYKLALAYNFVQGRRSQNVIASCLYVACRKE 140
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+LIDFS+ L ++VY +GA +L++ + L+I+ L DPS+F+ F ++L G
Sbjct: 141 KTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHISK----LPLADPSLFIQHFAEKLDLGD 196
Query: 121 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K KV A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E
Sbjct: 197 KKIKVVKDAVKLAQRMSHDWMFEGRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHVAEE 256
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKEL 208
TL +RL EF+NT+SG L+I +F +EL
Sbjct: 257 TLQQRLNEFKNTNSGKLSIHEFRKASEEL 285
>gi|392572943|gb|EIW66086.1| hypothetical protein TREMEDRAFT_35498, partial [Tremella
mesenterica DSM 1558]
Length = 731
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 122/208 (58%), Gaps = 10/208 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++ + +A+NI I+ A+R+YG+AV F +GRR E + ASCLYL CR K P +LI
Sbjct: 83 VKSVGDAMNI--EPHIIRGAQRWYGLAVDNRFNRGRRIEYIVASCLYLQCRMKKDPHMLI 140
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 127
DFS L INVYELG YL+L +L + + + +VDP+I+ +F +RL G V
Sbjct: 141 DFSERLTINVYELGGTYLKLRSILSL---TETMPEVDPAIYNLRFANRLSFGAPAVVHAI 197
Query: 128 ARDILASMKR---DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
A D ++R DW+T GR+P+GLCGA L ++A H + ++ ++V + T+ +R
Sbjct: 198 AADASKLIRRFAADWMTQGRRPAGLCGACLIIAARMHDFLRTPDEVAQVVKVAPITIHRR 257
Query: 185 LIEFENTDSGSLTIEDF--MARKKELHE 210
L EF T T+E++ M + LH+
Sbjct: 258 LREFAQTSIAKKTVEEWRNMTEEDLLHD 285
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 346 DNFSDIDDFEVDGY-LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 404
D F DIDD E+D Y + ++ E+ + +W N ++LEE+ ++ K ALE K
Sbjct: 555 DVFEDIDDEELDKYWIMDDHERDTRARMWLSSNGKWLEEEKTRQE-----KKALEEKRKG 609
Query: 405 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKI 464
R + + KR P TA EA + K+ SS++
Sbjct: 610 -------------------ESGRPKPKTKRKRPTARQKPFTTAREAITTLAIDKKFSSRV 650
Query: 465 NYDVLE 470
NYD LE
Sbjct: 651 NYDALE 656
>gi|296424786|ref|XP_002841927.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638179|emb|CAZ86118.1| unnamed protein product [Tuber melanosporum]
Length = 553
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 133/213 (62%), Gaps = 10/213 (4%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A+R++ ++V NF +GR+T+ V A CLY+ CR + +LIDFS+ LN+NV+ LG YLQ
Sbjct: 109 AQRWFTLSVTHNFNRGRKTQFVIACCLYIVCRLEKSSHMLIDFSDILNVNVFSLGHTYLQ 168
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRK 145
L Q+L + L +DP++++++F L G + KV + A I+ M RDW+ GR+
Sbjct: 169 LVQILEVR-----LPHIDPTVYVYRFAKHLDFGSEQTKVANDALRIIQRMSRDWMVQGRR 223
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205
PSG+CGAAL ++A + + S ++V +V + + T+ KRL EF++T SG LT+E+F R
Sbjct: 224 PSGICGAALILAARMNNFRRSVREVVYVVKVADLTIQKRLDEFKDTKSGDLTVEEF--RN 281
Query: 206 KELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 238
L + A + P+ GPK S ++ + D G+
Sbjct: 282 IWLEQ--AHDPPSYGPKASKKHKRVRDVNDDGE 312
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 28/122 (22%)
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
FEV L EEE++ K+ IW E N++YL ++ K E +N
Sbjct: 459 FEVQNALLTEEERNLKEKIWVEFNKDYLLKRLKK-----------ETDLRN--------- 498
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
+ K+ +++++ + ++ + A T ++ + ML ++ S KINY +E LF
Sbjct: 499 --------GIIKTARKRKRNKPRDSNSEDMAATPADSAKNMLMRRSYSKKINYKAIEGLF 550
Query: 474 DD 475
+D
Sbjct: 551 ED 552
>gi|392559045|gb|EIW52230.1| hypothetical protein TRAVEDRAFT_24512 [Trametes versicolor
FP-101664 SS1]
Length = 703
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 124/197 (62%), Gaps = 11/197 (5%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 66
++Q+ AL + E + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 89 IQQVATALRLSEV--VSLAATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYML 146
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 124
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F LL G++ +V
Sbjct: 147 IDFSDLLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFA-ALLEFGDETHQV 200
Query: 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
A ++ RDW+T GR+P+G+CGA L ++A + + S ++IV++V I + TL KR
Sbjct: 201 AMDAVRLVQRFDRDWMTKGRRPAGICGACLLLAARMNNFRRSVAEIVQVVKIADTTLKKR 260
Query: 185 LIEFENTDSGSLTIEDF 201
L EF T SG+LT+ DF
Sbjct: 261 LDEFRRTPSGALTLADF 277
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 27/119 (22%)
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
+L ++E K+ +W EMNR+YLE A AAKA L+ S + Q+
Sbjct: 510 FLLTDDEVRIKERVWVEMNRDYLE--------ALAAKAELQES--------EDKQKKTRK 553
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDDS 476
K R ++ TA E+ R ++ K + S +INY+ L+ LF D+
Sbjct: 554 RRKTNNKPRD----------ASTPHGSTAAESVRNLIKKNPKYSKRINYNALKDLFTDA 602
>gi|410963029|ref|XP_003988069.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Felis catus]
Length = 563
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 33 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 151
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 152 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 166
>gi|366994093|ref|XP_003676811.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
gi|342302678|emb|CCC70454.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
Length = 657
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 124/195 (63%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + +ALNI E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 157 LRAVSHALNIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 214
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPSIF+ F ++L G K KV
Sbjct: 215 DFSSRLQVSVYSIGATFLKMVKRLHITE----LPLADPSIFIQHFAEKLELGDKKIKVVK 270
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 271 DAVKLAQRMSHDWMFEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEDTLQQRLN 330
Query: 187 EFENTDSGSLTIEDF 201
EF+NT +G L+I +F
Sbjct: 331 EFKNTKAGKLSIHEF 345
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAAKAAL 398
D +N D+DD E++ L +EE K+ IW +N EYL EQ +K EA A
Sbjct: 520 DDPENLEDVDDEELEAQLLDEEASKLKERIWLGINGEYLLEQESKRLKEEADMVTGNTAN 579
Query: 399 EASYKNCPEGLQAAQ-ELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALEATRRML 455
+ + + E+ + A V ++ +AA A+ +G TA ++ + ML
Sbjct: 580 KKRRGGGGGRRKKPKTEITTSNATGVLAQLTDRTGLQAALKAAEENGDFTTA-DSVKNML 638
Query: 456 TKKRLSSKINYDVLEKLF 473
K S KINYD ++ LF
Sbjct: 639 QKATFSKKINYDAIDGLF 656
>gi|395328548|gb|EJF60939.1| hypothetical protein DICSQDRAFT_170484 [Dichomitus squalens
LYAD-421 SS1]
Length = 724
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 121/196 (61%), Gaps = 9/196 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 66
++Q+ AL + E + A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 97 IQQVATALRLSEV--VSLAATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYML 154
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 125
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F L G +V
Sbjct: 155 IDFSDLLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFAALLEFGEETHQVA 209
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A ++ RDW+T GR+P+G+CGA L ++A + + S ++IV++V I + TL KRL
Sbjct: 210 MDAIRLVQRFDRDWMTKGRRPAGICGACLLLAARMNNFRRSVAEIVQVVKIADTTLKKRL 269
Query: 186 IEFENTDSGSLTIEDF 201
EF T SG+LT+ DF
Sbjct: 270 EEFRKTPSGALTLADF 285
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 27/118 (22%)
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
++ EEE K+ IW EMN++YLE AAK A Q+
Sbjct: 526 FILTEEEVRIKERIWVEMNKDYLEAIAAK-----------------------AEQQEGQE 562
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDD 475
K RK + R A + TA E+ R ++ K + S +INY+ L++LF D
Sbjct: 563 KEKKSRKRRKTNNKPRDASTPH---GSTAAESVRNLIKKNPKYSKRINYNALKELFTD 617
>gi|390600638|gb|EIN10033.1| cyclin-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 584
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 116/186 (62%), Gaps = 9/186 (4%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYL--NIN 76
S+ I H A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++LIDFS+ L ++N
Sbjct: 102 SESICHAATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYMLIDFSDLLQASVN 161
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASM 135
V+ELG YLQL Q L + L VDPS ++ +F L G +V A ++
Sbjct: 162 VFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFAALLEFGEETHQVATDAVRLVQRF 216
Query: 136 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 195
RDW+T GR+P+G+CGAAL ++A + + S +IV++V I + TL KR+ EF T SG
Sbjct: 217 DRDWMTRGRRPAGICGAALLLAARMNNFRRSIEEIVQVVKIADVTLRKRMEEFRKTPSGE 276
Query: 196 LTIEDF 201
LT+ DF
Sbjct: 277 LTLADF 282
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 39/131 (29%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D +D+ E+D ++ EEE ++ +W E+N++YLE
Sbjct: 395 DELQGLDEEELDQFIMTEEEVKIRERVWVELNKDYLE----------------------- 431
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKI 464
A A + RK + R A + TA E+ R ++ K + S +I
Sbjct: 432 ------------AIAGTYSIRRKANNKPRDASTPH---GSTAAESARNLVKKNPKFSKRI 476
Query: 465 NYDVLEKLFDD 475
NYD L+ LF D
Sbjct: 477 NYDALKDLFID 487
>gi|66358198|ref|XP_626277.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
gi|46227281|gb|EAK88231.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
Length = 648
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 126/202 (62%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ + +++++ + L + S + A+R + +AV R+FT GR V ++CLY CR++
Sbjct: 82 LQRGYHNLQRIADQLRLSSSH--IESAQRVFLMAVQRSFTIGRNNMHVASACLYAICRRE 139
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG- 119
P +LIDFS+ L V LG V+++L ++L + + +DPS+F+ +F ++ G
Sbjct: 140 KTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLH-----VPNIDPSMFMERFAAQMKLGE 194
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V T I+ ++ R+WITTGR+P+GLCGAAL +SA HG+ S S+I +IV I
Sbjct: 195 KTHAVAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPVSSSEIAQIVRISSP 254
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
TL+KRL EF++T + LT ++F
Sbjct: 255 TLLKRLAEFKHTSTAQLTADEF 276
>gi|323508609|dbj|BAJ77198.1| cgd5_3540 [Cryptosporidium parvum]
gi|323510533|dbj|BAJ78160.1| cgd5_3540 [Cryptosporidium parvum]
Length = 646
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 126/202 (62%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ + +++++ + L + S + A+R + +AV R+FT GR V ++CLY CR++
Sbjct: 80 LQRGYHNLQRIADQLRLSSSH--IESAQRVFLMAVQRSFTIGRNNMHVASACLYAICRRE 137
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG- 119
P +LIDFS+ L V LG V+++L ++L + + +DPS+F+ +F ++ G
Sbjct: 138 KTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLH-----VPNIDPSMFMERFAAQMKLGE 192
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V T I+ ++ R+WITTGR+P+GLCGAAL +SA HG+ S S+I +IV I
Sbjct: 193 KTHAVAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPVSSSEIAQIVRISSP 252
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
TL+KRL EF++T + LT ++F
Sbjct: 253 TLLKRLAEFKHTSTAQLTADEF 274
>gi|67622824|ref|XP_667830.1| transcription factor IIIb subunit [Cryptosporidium hominis TU502]
gi|54658996|gb|EAL37598.1| transcription factor IIIb subunit [Cryptosporidium hominis]
Length = 646
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 126/202 (62%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ + +++++ + L + S + A+R + +AV R+FT GR V ++CLY CR++
Sbjct: 80 LQRGYHNLQRIADQLRLSSSH--IESAQRVFLMAVQRSFTIGRNNMHVASACLYAICRRE 137
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG- 119
P +LIDFS+ L V LG V+++L ++L + + +DPS+F+ +F ++ G
Sbjct: 138 KTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLH-----VPNIDPSMFMERFAAQMKLGE 192
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V T I+ ++ R+WITTGR+P+GLCGAAL +SA HG+ S S+I +IV I
Sbjct: 193 KTHAVAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPVSSSEIAQIVRISSP 252
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
TL+KRL EF++T + LT ++F
Sbjct: 253 TLLKRLAEFKHTSTAQLTADEF 274
>gi|410963031|ref|XP_003988070.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Felis catus]
Length = 587
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 111/171 (64%), Gaps = 6/171 (3%)
Query: 33 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92
+AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L + L
Sbjct: 1 MAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELC 60
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 151
I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 INAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 115
Query: 152 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 116 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 166
>gi|156083907|ref|XP_001609437.1| transcription factor TFIIB subunit [Babesia bovis T2Bo]
gi|154796688|gb|EDO05869.1| transcription factor TFIIB subunit, putative [Babesia bovis]
Length = 519
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 112/186 (60%), Gaps = 6/186 (3%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+ A ++ S E+V A R Y +AV RNFT GR + V CLY ACR+ P+LLIDF++
Sbjct: 92 RTACHLNISSELVTKATRIYSLAVQRNFTMGRNNKHVACCCLYTACRRFKAPYLLIDFAD 151
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARD 130
L + V +G V+++L ++L++ + VDPSIF +F + L L ++ T
Sbjct: 152 VLQVPVKIIGQVFMKLVRMLHLE-----VPNVDPSIFFERFANELQLKDKVDQIITTGVR 206
Query: 131 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190
++ +M+RDW+ TGR+P+GLCGAAL V+A HG+ + + +V I T+MKRL EF
Sbjct: 207 LIQAMRRDWLCTGRRPTGLCGAALVVAARIHGVPLNAEAVASVVRISHPTIMKRLSEFRG 266
Query: 191 TDSGSL 196
T + L
Sbjct: 267 TSTARL 272
>gi|50553846|ref|XP_504334.1| YALI0E24035p [Yarrowia lipolytica]
gi|49650203|emb|CAG79933.1| YALI0E24035p [Yarrowia lipolytica CLIB122]
Length = 512
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 133/481 (27%), Positives = 230/481 (47%), Gaps = 57/481 (11%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K + + + +A++I + I+ A R++ +AV +NF KGRR++ V ++CLY+ACR++
Sbjct: 74 LQKGKNRITALAHAMDIPQ--HIIEKAHRYFVLAVTKNFVKGRRSQYVVSACLYVACRRE 131
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ +LIDF++ L NV+ +G YLQL + L I + L +DPSI++ +F +L
Sbjct: 132 LRHEMLIDFADKLFCNVFAIGTTYLQLLKTLDIKN----LPLIDPSIYIQRFASKLDFDN 187
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K V + A ++ M RD++ GR+P+G+ AAL ++A + + SK+ I + E T
Sbjct: 188 AKNVRNDAVRLVQRMGRDYLVEGRRPAGIAAAALLLAARMNNQRRSKTQIAFYAKVAEET 247
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPF 240
L +RL EF +T++G TI F E + + + G+ E + D
Sbjct: 248 LQRRLDEFRHTEAGRQTISVFRMTNIESQSDPPSYQKHRKREQEGIEEKVQDEIDAE--- 304
Query: 241 ACGLCRSCYEEFMTISEGLEGGADPPAF----QVAERERMVKASAEENSSFERESDSPFM 296
+ + +E E A F + ER V+ A+ +ERE
Sbjct: 305 ----MEEMMAQMVEKNENPEERAKEALFLEDTPQEKAERTVQNRAQYIIEYERERRRMLN 360
Query: 297 SRVDKVQSPEPESIGVPKNCTT---QTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-D 352
+ + ++ P QTA EG GD + P V++ SD+ D
Sbjct: 361 EEANNAATEALLAMKTPHEQMMEDQQTAEKEG-GD-ARPPVVES----------LSDLDD 408
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D E+D L N+EE++ K+ +W +N EYL+EQ K A K
Sbjct: 409 DPEIDSILLNDEERNIKEAVWTTVNMEYLQEQETKLLKIEADK----------------- 451
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
AA V K K++++++ + + P + A E+T++M+ ++ S KINY+ L
Sbjct: 452 -------AAGVYKEPKKRKRQKQKDGEKPAPPKDAAESTKQMVQQRAPSKKINYEKFSGL 504
Query: 473 F 473
+
Sbjct: 505 W 505
>gi|85000687|ref|XP_955062.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303208|emb|CAI75586.1| unnamed protein product [Theileria annulata]
Length = 531
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 120/201 (59%), Gaps = 7/201 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ + ++++++ AL + S + AKR Y +AV RNFT GR V + CLY CR++
Sbjct: 80 INRGNENIKKIAEALRL--SPHHIDAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRRE 137
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P LLIDFS+ L V +G ++++L ++L+I+ + +DPSIF +F +L
Sbjct: 138 RTPHLLIDFSDVLLTPVKTIGQIFMKLVRMLHIS-----VPNIDPSIFFERFATQLQLKD 192
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K+ +T I+ +M RDW+ TGR+P+GLCGAAL V+A HG+ S + +V I T
Sbjct: 193 IHKIINTGNRIIQAMNRDWLCTGRRPTGLCGAALLVAARFHGISLSAESVSSVVRISHPT 252
Query: 181 LMKRLIEFENTDSGSLTIEDF 201
++KRL EF+ T + + + +F
Sbjct: 253 ILKRLSEFKVTSTAHIKVSEF 273
>gi|71027505|ref|XP_763396.1| transcription factor IIIb subunit [Theileria parva strain Muguga]
gi|68350349|gb|EAN31113.1| transcription factor IIIb subunit, putative [Theileria parva]
Length = 526
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 121/201 (60%), Gaps = 7/201 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ + ++++++ AL + S + AKR Y +AV RNFT GR V + CLY CR++
Sbjct: 80 INRGNENIKRIAEALKL--SPHHIDAAKRIYLLAVQRNFTMGRNNLHVASCCLYTICRRE 137
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P LLIDFS+ L V +G ++++L ++L+I+ + VDPSIF +F +L
Sbjct: 138 KTPHLLIDFSDVLLTPVKTIGQIFMKLVRMLHIS-----VPNVDPSIFFERFATQLKLKD 192
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K+ +T I+ +M RDW+ TGR+P+GLCGAAL V+A HG+ S + +V I T
Sbjct: 193 IHKIINTGNRIIQAMNRDWLCTGRRPTGLCGAALLVAARFHGIPLSAEAVSSVVRISHPT 252
Query: 181 LMKRLIEFENTDSGSLTIEDF 201
++KRL EF+ T + ++ + +F
Sbjct: 253 ILKRLSEFKVTSTANIKVSEF 273
>gi|389742730|gb|EIM83916.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 687
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 118/191 (61%), Gaps = 9/191 (4%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNY 72
A N+ S+ + A R Y +AV FTKGR+ V A CLY+ACRQK ++ +LIDFS+
Sbjct: 93 ASNLHLSETVSMSASRLYSLAVEHKFTKGRKAMNVVAVCLYVACRQKGTRSLMLIDFSDL 152
Query: 73 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARD 130
L +NV+ELG YLQL Q L + L VDPS ++ +F LL G++ +V A
Sbjct: 153 LQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFA-ALLEFGDETSRVATDAVR 206
Query: 131 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190
++ RDW+T GR+P+G+CGA L ++A + + S +IV++V I + TL KRL EF+
Sbjct: 207 LVQRFDRDWMTKGRRPAGICGACLLLAARMNNFRRSIEEIVQVVKIADTTLKKRLDEFKR 266
Query: 191 TDSGSLTIEDF 201
T S +LTI DF
Sbjct: 267 TRSANLTIGDF 277
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D +D+ E+D +L +EE K+ +W EMN+EYLE A K
Sbjct: 521 DELLGLDEDELDKFLLTDEEVKIKERVWVEMNKEYLEAIALK------------------ 562
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
A++ + + K RK + R A + TA E+ R +L + + S +IN
Sbjct: 563 ------AEQRDNGSTSKPRKKRKTNSKPRDASTPH---GNTAAESVRSLLKQPKYSKRIN 613
Query: 466 YDVLEKLF 473
Y+ L+ LF
Sbjct: 614 YNALKDLF 621
>gi|313237620|emb|CBY12764.1| unnamed protein product [Oikopleura dioica]
Length = 569
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 111/181 (61%), Gaps = 11/181 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACR--QKSKPFLLIDFSNYLNINVYELGAVY 84
A +Y +A+ ++FT+GRR EQV ASC+YL+CR + +L+DFS L +NVY LG +
Sbjct: 102 AYNYYRLALNKSFTRGRRAEQVYASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTF 161
Query: 85 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG----NKKVCDTARDILASMKRDWI 140
L+L Q L I +DP ++H+F +L G NK+V +T+ I+ M RDW+
Sbjct: 162 LKLSQELNITPH-----MLDPVFYIHRFAHQLGFGDSGTKNKEVMETSNRIVQRMNRDWM 216
Query: 141 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 200
T GR+P+G+CGAA ++A HG + + DI K+ I T+ KRL EF T S LTI++
Sbjct: 217 TEGRRPAGICGAAFVIAARMHGFRCNIEDITKVFKIGPNTIRKRLHEFGATPSAKLTIDE 276
Query: 201 F 201
F
Sbjct: 277 F 277
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 40/203 (19%)
Query: 278 KASAEENSSFERESDSPFMSRVD--KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGV 335
+A A N +F SD+P SR + +++S P P + + E P +
Sbjct: 372 EALARLNPNFVGSSDTPSTSRPENGRLESLLPNESYQPTVESLGITRSHAEMLSLSDPSM 431
Query: 336 D---ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEM--NREYLEEQAAKEAA 390
+ + E DG + IDD E+ + NE E K +WE N+E+++ Q K
Sbjct: 432 ENNVSKEELHDGELDLEGIDDDEISCMILNEAEVSRKTTMWENRKENKEWVKRQEEKRLE 491
Query: 391 AAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPA-QTALE 449
A+ N P+ +A R K++ P TA E
Sbjct: 492 EAS----------NPPKAKRA----------------------RKRRGKSTLPEYSTAGE 519
Query: 450 ATRRMLTKKRLSSKINYDVLEKL 472
A + ++ +KR S+ INYDVL L
Sbjct: 520 ALQTVIKQKRFSTNINYDVLNTL 542
>gi|320580982|gb|EFW95204.1| TFIIIB B-related factor [Ogataea parapolymorpha DL-1]
Length = 534
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 125/202 (61%), Gaps = 15/202 (7%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL I D I A +++ +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 89 IRNVAAALKI--KDYIADAACQWFQLALTNNFVQGRRSQNVVAACLYIACRKEKTHHMLI 146
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTD-----RLLPGGNK 122
DFS+ L I+VY +GA +L++ + L+I L VDPS+F+ F + R+LP
Sbjct: 147 DFSSRLQISVYAVGATFLKMVKALHITS----LPLVDPSLFIQNFAEKLDFGRMLP---- 198
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
KV + A + M DWI GR+P+G+ GA + ++A + + + S+IV + HI E+T+
Sbjct: 199 KVINDAIKLAHRMSEDWIHEGRRPAGIAGACILLAARMNNFRRTHSEIVAVTHIGESTIQ 258
Query: 183 KRLIEFENTDSGSLTIEDFMAR 204
KRL EF+NT++ LT+E+F R
Sbjct: 259 KRLNEFKNTNASGLTVEEFRER 280
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 23/145 (15%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
D +N D DD E++ L EEE K+ +W N+E+L Q K A + A +
Sbjct: 402 DDPENLDDADDDEINNILLTEEESKLKERLWVGSNQEFLLAQETKRLKEDADRIAGHNQH 461
Query: 403 KNCPEGLQAAQ-----------ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 451
+ + E + A++ + + Q+ AA++ S
Sbjct: 462 PKRRKRTTKTEDKGNDLKSEYGEYLSGASSHLGLTAALNQELSAADSAKS---------- 511
Query: 452 RRMLTKKRLSSKINYDVLEKLFDDS 476
ML K LS KINY+ + +LFDD+
Sbjct: 512 --MLKNKSLSKKINYEAVNELFDDN 534
>gi|255719280|ref|XP_002555920.1| KLTH0H00924p [Lachancea thermotolerans]
gi|238941886|emb|CAR30058.1| KLTH0H00924p [Lachancea thermotolerans CBS 6340]
Length = 571
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 123/195 (63%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + +AL I E + A ++Y +A++ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 90 LRAVSHALGIPEY--VTDAATQWYTLALSNNFVQGRRSQNVIAACLYIACRKEKTHHMLI 147
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L++ + L+I L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVSVYSIGATFLKMVKALHITK----LPLADPSLFIQHFAEKLDLGDKKIKVVK 203
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M RDW+ GR+P+G+ GA L ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 204 DAVKLAQRMARDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAVSHVAEETLQQRLN 263
Query: 187 EFENTDSGSLTIEDF 201
EF++T SG L+I +F
Sbjct: 264 EFKSTKSGKLSINEF 278
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
++ +D ++ D+DD E+D L +EE K+ IW +N ++L EQ +K A A+
Sbjct: 435 SKVADDPEDLQDVDDEELDSQLLDEEASKLKERIWIGINGDFLLEQESKRLKQEADMASG 494
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALEATRRMLT 456
AS K G + AA+ A V K+ AA A+++G TA + + M+
Sbjct: 495 NASVKK--RGGPRRKRKAASDADGVLADIKDDSGLHAALKLAEDTGDFTTA-DNVKNMIQ 551
Query: 457 KKRLSSKINYDVLEKLFDDS 476
K S KINY+ ++ LF S
Sbjct: 552 KSSFSKKINYNAIDGLFGSS 571
>gi|160333889|ref|NP_001037055.1| TFIIB-related factor [Bombyx mori]
gi|22417141|gb|AAM96688.1| TFIIB-related Factor [Bombyx mori]
Length = 661
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 144/522 (27%), Positives = 223/522 (42%), Gaps = 159/522 (30%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ +A FY +A++R+ T GR QA+C+Y+ CR + P LLID S+ + + Y+LG
Sbjct: 107 IDIACNFYKMALSRHLTIGRPVTHTQAACVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRA 166
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 142
Y +L + L I + DP +++ +F +L +V TA ++ MK+D I +
Sbjct: 167 YFKLSRALCIN-----IPPTDPCLYILRFASQLKFEDKQHEVSMTALRLVQRMKKDSIHS 221
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSG+CGAAL ++A H + SDIV+IV + E+TL KR+ EF +T S +LT+
Sbjct: 222 GRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKRMFEFGDTPSSALTL---- 277
Query: 203 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 262
EEFMT+ LE
Sbjct: 278 -----------------------------------------------EEFMTVD--LEEE 288
Query: 263 ADPPAFQVA---ERERMVKASAEEN-----SSFERESDSPF---MSRVDKV------QSP 305
DPPAF+ A ++ER+ K EE+ + ++E ++ MSR KV SP
Sbjct: 289 QDPPAFRAARKRDKERLQKLMEEEDGEKELTELQKEIEAQIEKDMSRRRKVCSASYTSSP 348
Query: 306 EP---ESIGVPKNCTTQTAS-----------------NEG---EGDHTKTP-----GVDA 337
P E+IG T+ A+ NEG E H K G D
Sbjct: 349 GPVSQENIGSEDEDATRFAAEETLEIIDEITKDIRPKNEGPKEENKHEKMKLEKGLGPDL 408
Query: 338 TTEASDGSDN--------------------------FSDIDDFEVDGYLHNEEEKHYKKI 371
SD+ S D+ +D + + +E +K
Sbjct: 409 AVIGLGPSDDKNADKFVKPEPKQTFCKDLQNADELVMSQRDEEYIDSLIMSADEAKHKTK 468
Query: 372 IWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ 431
+W ++N YL+EQ K QE+ A + +++ +K+
Sbjct: 469 LWNKVNAGYLKEQKIK-------------------------QEIKAKE---LEENKDKKK 500
Query: 432 QKRAAEAKNSG-PAQTALEATRRMLTKKRLSSKINYDVLEKL 472
+ R + K A TA EA +ML +K++SSKINYD+L+ L
Sbjct: 501 KVRGSYRKKVAINAATAGEAIEKMLAEKKMSSKINYDILKSL 542
>gi|209877443|ref|XP_002140163.1| transcription factor IIIB subunit BRF-1 [Cryptosporidium muris
RN66]
gi|209555769|gb|EEA05814.1| transcription factor IIIB subunit BRF-1, putative [Cryptosporidium
muris RN66]
Length = 611
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 126/202 (62%), Gaps = 8/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ + +++++ + L++ S + A+R + +AV RNFT GR V ++CLY CR++
Sbjct: 79 LQRGYHNLQRIADQLHLSASH--IESAQRVFLMAVQRNFTIGRNNMYVASACLYAICRRE 136
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P +LIDFS+ L V LG V+++L ++L + + +DPS+F+ +F ++ L
Sbjct: 137 KTPHMLIDFSDVLQAPVKVLGQVFMKLLRLLRLH-----VPNIDPSMFMERFAAQMNLGN 191
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ T I+ ++ RDWITTGR+P+GLCGAAL +SA HG+ S ++I +IV I
Sbjct: 192 KTHSIAATGVRIVQALTRDWITTGRRPTGLCGAALLISARYHGIPVSSNEIAQIVRISSP 251
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
TL+KRL EF++T + LT +F
Sbjct: 252 TLLKRLAEFKHTSTAQLTAAEF 273
>gi|157820901|ref|NP_001100231.1| transcription factor IIIB 90 kDa subunit [Rattus norvegicus]
gi|149044025|gb|EDL97407.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 686
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 198/429 (46%), Gaps = 70/429 (16%)
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDIL 132
+NVY LG +L L + L I + +DP +++ +F L G N +V TA +L
Sbjct: 167 QVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLL 221
Query: 133 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 192
MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T
Sbjct: 222 QRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTP 281
Query: 193 SGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMNEVLCKH 233
+ LTI++FM R K+L + ++ L ++S + +
Sbjct: 282 TSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISTYQDAIEIE 341
Query: 234 KDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE--- 290
+ +P A G + ++ G + + P + E E + A++ N F RE
Sbjct: 342 LENSRPKAKGALANLSKD----GSGEDATSSPFCEEDTEDEELEAAASHMNKDFYRELLG 397
Query: 291 SDSPFMSRVDKVQSPEP---ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASD 343
+D + D P ES+ P TA++ G D + +P D + D
Sbjct: 398 ADGGSEAAEDADGGSRPLALESLLGP----LPTAASLGISDSIRECISSPSGDPKDSSGD 453
Query: 344 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 403
G + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 454 GELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQKEKEARIAKEK-------- 505
Query: 404 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSK 463
EL KE + K++ + + A TA EA +ML +K++SSK
Sbjct: 506 ----------ELGI---------YKEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSK 546
Query: 464 INYDVLEKL 472
INY VL L
Sbjct: 547 INYSVLRDL 555
>gi|619493|emb|CAA87399.1| TFIIB related subunit of TFIIIB (BRF1) [Kluyveromyces lactis]
Length = 556
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 7/205 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR++ +LI
Sbjct: 98 LKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLI 155
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L G K KV
Sbjct: 156 DFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLELGDKKIKVIR 211
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+IV I H+ E TL +RL
Sbjct: 212 DAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETLQQRLN 271
Query: 187 EFENTDSGSLTIEDFMARKKELHEG 211
EF+NT S L++++F + E++EG
Sbjct: 272 EFKNTTSAKLSVKEFRDDETEVNEG 296
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 458
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 459 RLSSKINYDVLEKLF 473
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>gi|50302609|ref|XP_451240.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|52788254|sp|P46070.2|TF3B_KLULA RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|49640371|emb|CAH02828.1| KLLA0A05434p [Kluyveromyces lactis]
Length = 556
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 7/205 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR++ +LI
Sbjct: 98 LKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLI 155
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L G K KV
Sbjct: 156 DFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLELGDKKIKVIR 211
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+IV I H+ E TL +RL
Sbjct: 212 DAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETLQQRLN 271
Query: 187 EFENTDSGSLTIEDFMARKKELHEG 211
EF+NT S L++++F + E++EG
Sbjct: 272 EFKNTTSAKLSVKEFRDDETEVNEG 296
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 458
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 459 RLSSKINYDVLEKLF 473
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>gi|367004042|ref|XP_003686754.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
gi|357525056|emb|CCE64320.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
Length = 602
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 125/195 (64%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + +AL I D I A ++Y +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 91 LRAVSHALRI--QDYITDAAFQWYKLALHHNFVQGRRSQNVIAACLYVACRKEKTHHMLI 148
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L G K KV
Sbjct: 149 DFSSRLQVSVYSIGATFLKMVKRLHITN----LPLADPSLFIQHFAEKLDLGEKKIKVIK 204
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + S+IV I H+ E TL +RL
Sbjct: 205 DAVKLAQRMSKDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIVAISHVAEETLQQRLN 264
Query: 187 EFENTDSGSLTIEDF 201
EF+NT++G L+I++F
Sbjct: 265 EFKNTNTGKLSIKEF 279
>gi|328851991|gb|EGG01140.1| hypothetical protein MELLADRAFT_92647 [Melampsora larici-populina
98AG31]
Length = 649
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 129/218 (59%), Gaps = 11/218 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E ++ M + LN+ E I A RF+ +A++ F GRR+ V ASC+Y+ACR
Sbjct: 86 LENGLRNLLSMAHGLNLSEV--IAESAHRFFTLALSNGFVMGRRSPYVLASCIYVACRMN 143
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P +LID S++L +NV+ +GA YL+L + L + + +DPS+++ +F L G
Sbjct: 144 KLPTMLIDISDFLQVNVFIVGATYLKLVKELCLTQ----IPLIDPSLYISRFAALLEFGE 199
Query: 121 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+KV A ++ DWITTGR+PSG+ GA L ++A + K S +IV++V I +
Sbjct: 200 ETEKVAYDATRLVKRFDHDWITTGRRPSGIAGACLLIAARMNNFKRSVLEIVQVVKIADV 259
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 217
T+ KRL EF+ +++G +T+EDF R + L E A N P
Sbjct: 260 TIKKRLDEFKRSETGKMTVEDF--RNQWLEE--AENPP 293
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 25/128 (19%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D+ SD+D+ E+D ++ NE E K +W E+NREYLE+ A K+ A + Y +
Sbjct: 454 DHLSDLDEDELDCFILNENEVEIKTRVWMELNREYLEKLAEKKEREATGEIKPTKKYASK 513
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
P+ AK R +++N G A + +KK+LSSKIN
Sbjct: 514 PK----------------AKPR---------DSENPGGATVGESVMNMINSKKKLSSKIN 548
Query: 466 YDVLEKLF 473
Y + + LF
Sbjct: 549 YKIADSLF 556
>gi|449544216|gb|EMD35190.1| hypothetical protein CERSUDRAFT_116658 [Ceriporiopsis subvermispora
B]
Length = 662
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 120/196 (61%), Gaps = 9/196 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 66
++Q+ A+ + E ++ A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 89 IQQVATAMRLSEVVQLA--ATRLYTLAVEHKFTKGRKSMNVVAVCLYVACRQKETRNYML 146
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVC 125
IDFS+ L +NV+ELG YLQL Q L + L VDPS ++ +F L G +V
Sbjct: 147 IDFSDLLQVNVFELGHTYLQLVQTLNLR-----LPLVDPSHYISRFAALLEFGEETHQVA 201
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A ++A RDW+ GR+P+G+CGA L ++A + + S ++V++V I + TL KRL
Sbjct: 202 LDATRLVARFDRDWLARGRRPAGICGACLLLAARMNNFRRSVEEVVQVVKIADTTLRKRL 261
Query: 186 IEFENTDSGSLTIEDF 201
EF T SG L++ DF
Sbjct: 262 EEFRKTPSGQLSLADF 277
Score = 41.6 bits (96), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 26/119 (21%)
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
+L EEE K+ +W EMN +YLE AAK A A+ A
Sbjct: 468 FLLTEEEVRIKERVWVEMNLDYLEAIAAKSEQQAEAE----------------------A 505
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFDDS 476
K RK + R A + TA E+ R ++ K + S +INYD L+ LFD S
Sbjct: 506 KEKKSRKRRKTSNKPRDASTPH---GSTAAESVRNLIKKNPKYSKRINYDALKDLFDGS 561
>gi|156845831|ref|XP_001645805.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
gi|156116473|gb|EDO17947.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 577
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 124/195 (63%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + +AL I E I A ++Y +A+ +NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 91 LRAVSHALGIPEY--ITDAAHQWYKLALHQNFVQGRRSQNVIASCLYIACRKEKTHHMLI 148
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L G K KV
Sbjct: 149 DFSSRLQVSVYSIGATFLKMVKRLHITN----LPLADPSLFIQHFAEKLDLGDKKIKVVK 204
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E TL +RL
Sbjct: 205 DAVKLAQRMSKDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEETLQQRLN 264
Query: 187 EFENTDSGSLTIEDF 201
EF+NT S L+I++F
Sbjct: 265 EFKNTKSAKLSIKEF 279
>gi|399218262|emb|CCF75149.1| unnamed protein product [Babesia microti strain RI]
Length = 592
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++ + +++++ L++ S + V A+R Y +AV R+FT GR V A CLY+ CR++
Sbjct: 82 IQRGYSNIQRIAGYLHL--STQHVEAAQRIYLLAVQRSFTIGRNNLHVAACCLYIICRRE 139
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P LLIDFS+ L V LG ++++L ++L+I+ + VDPSIF +F +L +
Sbjct: 140 KTPHLLIDFSDVLQTPVKILGQIFMKLVRLLHIS-----VPNVDPSIFFERFASQLKIKD 194
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ T ++ +M RDW+ TGR+P+GLCGAAL V++ HG+ S+S + +V I
Sbjct: 195 KIRQITATGIRLIQAMDRDWLCTGRRPTGLCGAALVVASRYHGVPLSESAVANVVRISNY 254
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 217
T++KRL EF+ T + LT DF + +L E +LP
Sbjct: 255 TIIKRLSEFKLTATARLTRGDF--ERLDLTELPQLSLP 290
>gi|213407030|ref|XP_002174286.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
gi|212002333|gb|EEB07993.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
Length = 508
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 118/183 (64%), Gaps = 6/183 (3%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 79
+D V A R++ +A+ NF KGRR++ V ASCLY+ CR +LIDFS+ L INV++
Sbjct: 98 TDRHVEAAVRYFTLAINHNFIKGRRSQYVVASCLYVECRMAKTSHMLIDFSDVLQINVFK 157
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRD 138
LG+ +L+LC+VL I L +DPSI++ +F L G ++V A +++ M RD
Sbjct: 158 LGSTFLKLCRVLRI-----TLPLLDPSIYIGRFAAMLEFGSETQRVASDATRLVSRMNRD 212
Query: 139 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 198
W+ GR+P+G+CGA L ++A + + S ++V +V + +AT+ KRL EF +T+SG L++
Sbjct: 213 WMQIGRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADATIQKRLEEFRDTESGELSV 272
Query: 199 EDF 201
DF
Sbjct: 273 ADF 275
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 24/126 (19%)
Query: 350 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
D +D E+D +L + E K +W E+N++YL +Q K L
Sbjct: 407 DFNDEEIDKFLLSSNEVEAKTRVWMELNKDYLADQERKR--------------------L 446
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 469
+A ++L K RK K + + E G A TA+E+ + M+ ++ S KINY+ L
Sbjct: 447 KAEEDLKRGIVRQPRKRRKYKPRDSSTE----GVASTAIESAKEMMQQRTFSKKINYEAL 502
Query: 470 EKLFDD 475
+ LF+D
Sbjct: 503 DHLFND 508
>gi|313217012|emb|CBY38206.1| unnamed protein product [Oikopleura dioica]
Length = 357
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 111/181 (61%), Gaps = 11/181 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACR--QKSKPFLLIDFSNYLNINVYELGAVY 84
A +Y +A+ ++FT+GRR EQV ASC+YL+CR + +L+DFS L +NVY LG +
Sbjct: 102 AYNYYRLALNKSFTRGRRAEQVYASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTF 161
Query: 85 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG----NKKVCDTARDILASMKRDWI 140
L+L Q L I +DP ++H+F +L G NK+V +T+ I+ M RDW+
Sbjct: 162 LKLSQELNITPH-----MLDPVFYIHRFAHQLGFGDSGTKNKEVMETSNRIVQRMNRDWM 216
Query: 141 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 200
T GR+P+G+CGAA ++A HG + + DI K+ I T+ KRL EF T S LTI++
Sbjct: 217 TEGRRPAGICGAAFVIAARMHGFRCNIEDITKVFKIGPNTIRKRLHEFGATPSAKLTIDE 276
Query: 201 F 201
F
Sbjct: 277 F 277
>gi|328770639|gb|EGF80680.1| hypothetical protein BATDEDRAFT_24490 [Batrachochytrium
dendrobatidis JAM81]
Length = 491
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 136/488 (27%), Positives = 226/488 (46%), Gaps = 105/488 (21%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ ++++ N I ++ +V A+RF+ +AV NFTKGR++ V A+CLY+ CR +
Sbjct: 86 LQNGHRRIQEVANQPQIRMNERLVGHARRFFNVAVVNNFTKGRKSGNVVAACLYIVCRLE 145
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+LIDF++ L+ NVY++GA +L LC++ + + + VDPS+++ +F +L G
Sbjct: 146 KTAHMLIDFADALSTNVYQVGATFLALCKISGV----DKMPLVDPSLYISRFAAKLDFGE 201
Query: 121 N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ + + A ++ M RDW+ TGR+P+G+C A+L+V++ H + +I+ +V ICEA
Sbjct: 202 DTQNIVKDANRLVQRMCRDWMQTGRRPAGICAASLFVASRMHNHNRTIREIILVVKICEA 261
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP 239
TL +RL EF T S +L+++
Sbjct: 262 TLRRRLREFRETPSSNLSVQ---------------------------------------- 281
Query: 240 FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRV 299
+F TI LEG DPP+F + + AS FE +S+ +++
Sbjct: 282 -----------DFQTI--WLEGERDPPSFAPPKTRKHEPAS----QLFE-DSNGDSKAKI 323
Query: 300 DKVQSPEPESIGVPKNCTTQTASNEGE---------GDHTKTPGVDATTEASDGSDNFSD 350
++ S ES+ + NE + + KT DAT + +
Sbjct: 324 EQAFSSLKESVLAGDDDEDLEDLNEQQLLSFEQSLIQVYNKTEA-DATHQIHYSDNLSDL 382
Query: 351 IDDFEVDGYLH-NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
DD E+ + EE +K+ IW E N+E++ Q AK
Sbjct: 383 DDDQEIQAMIDVTPEEVEFKEAIWTEENKEWILRQQAK---------------------- 420
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM-LTKKRLSSKINYDV 468
AA +A+S K K +KR + S A TA EA + + ++K LS KINY V
Sbjct: 421 -------AALGIGLAESEKRKPKKRPRVIR-SYEAPTAAEAAKNLVMSKPTLSKKINYGV 472
Query: 469 LEKLFDDS 476
LE LF+ +
Sbjct: 473 LETLFEKT 480
>gi|254580311|ref|XP_002496141.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
gi|238939032|emb|CAR27208.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
Length = 588
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 124/202 (61%), Gaps = 7/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ A+ +R + ALNI E I A ++Y +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 83 LNNAYRKLRAVSFALNIPEY--ITDAAHQWYKLALHYNFVQGRRSQNVIAACLYIACRKE 140
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+LIDFS+ L ++VY +GA +L++ + L I L DPS+F+ F ++L G
Sbjct: 141 RTHHMLIDFSSRLQVSVYSIGATFLRMVKRLNITK----LPLADPSLFIQHFAEKLDLGD 196
Query: 121 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K KV A + M RDW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E
Sbjct: 197 KKIKVAKDAVKLAQRMSRDWMYEGRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHVAEE 256
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ +RL EF+NT +G L+I +F
Sbjct: 257 TIQQRLNEFKNTKTGKLSINEF 278
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD ++N D+DD E++ L +EE K+ IW +N EYL EQ +K EA AA
Sbjct: 450 SKVSDDAENLDDVDDDELESQLLDEEASKLKERIWIGINGEYLLEQESKRLKLEADIAAG 509
Query: 395 KAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 454
+ + N + ++ A + + A+ G TA ++ + M
Sbjct: 510 NTSSKRKRGNRRRKRKTEMDVDQAISTMSSIDDPTSLHSALQAAEQKGDFSTA-DSVKNM 568
Query: 455 LTKKRLSSKINYDVLEKLF 473
L K S KINYD ++ LF
Sbjct: 569 LQKASFSKKINYDAIDGLF 587
>gi|326430273|gb|EGD75843.1| hypothetical protein PTSG_07961 [Salpingoeca sp. ATCC 50818]
Length = 543
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 119/196 (60%), Gaps = 12/196 (6%)
Query: 9 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 68
R MK LN G D V ++Y +A + FT GR +E V A CLY+ CR++ +L+D
Sbjct: 83 RNMK--LNQGHIDAAV----KYYRMAAQQKFTAGRPSEHVAACCLYIVCREERSMLMLLD 136
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDT 127
F+++L +NVY+L + +L L L I L +DP +FL +F +L G + + T
Sbjct: 137 FADFLRVNVYKLASTFLSLRLKLSI-----TLPVIDPVLFLPRFVMQLDLGDKQHDIGRT 191
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I++ MKRDW+ GR+P+G+CGAAL ++A +G S+ D+V V +C +T+ KRL E
Sbjct: 192 AIRIVSRMKRDWLHVGRRPAGICGAALLLAARMYGFARSQKDVVHAVRVCSSTVRKRLDE 251
Query: 188 FENTDSGSLTIEDFMA 203
F T S LT+++FM+
Sbjct: 252 FAETPSARLTMDEFMS 267
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 33/115 (28%)
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
++ N+EE K +IW + N++YLE QA K A N P+
Sbjct: 456 HILNDEEVKVKTVIWTQNNQDYLERQARKREEEA-----------NAPK----------- 493
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
K +K + Q R + K+ A A R+ T+++ SSKINYD L+ LF
Sbjct: 494 ------KPKKRRNQPRLPDHKHHRGA-----ARERLKTEEKKSSKINYDSLQSLF 537
>gi|367016367|ref|XP_003682682.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
gi|359750345|emb|CCE93471.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
Length = 545
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 122/195 (62%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + +ALNI E I A ++Y +A+A NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 90 LRAVSHALNIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIAACLYVACRKEKTHHMLI 147
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L + VY +GA +L++ + L+I L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVGVYSIGATFLKMVKRLHITK----LPLADPSLFIQHFAEKLDLGDKKIKVVR 203
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M RDW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E T+ +RL
Sbjct: 204 DAVKLAQRMSRDWMYEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEETIQERLN 263
Query: 187 EFENTDSGSLTIEDF 201
EF+ T +G L+I +F
Sbjct: 264 EFKGTKAGKLSINEF 278
>gi|401841983|gb|EJT44282.1| BRF1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 597
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 130/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + +++V + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEVVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++DF R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQDF--RENDVEDGEA 285
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 454 SKVSDDPDNLGDVDDEELNAHLLNEEASKLKERIWVGLNADFLLEQESKRLKQEADIATG 513
Query: 395 KAAL---EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 449
++ +N + + + AAAA + ++K AA A+ +G TA +
Sbjct: 514 NTSVKKKRTRRRNNTRNNEPTKSVDAAAAIGLMSDLQDKSGLHAALKAAEENGDFTTA-D 572
Query: 450 ATRRMLTKKRLSSKINYDVLEKLF 473
+ + ML K S KINYD ++ LF
Sbjct: 573 SVKNMLQKASFSKKINYDAIDGLF 596
>gi|358422124|ref|XP_875578.3| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Bos taurus]
Length = 595
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 108/171 (63%), Gaps = 8/171 (4%)
Query: 33 IAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92
+AV+++ T+GRRT V A+CLYL CR + P +L+D S+ L +N+ LG L L +
Sbjct: 1 MAVSKHLTRGRRTAHVVAACLYLVCRTEGTPHMLLDLSDLLQVNLVTLGLSGLLLATLRC 60
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 151
++ DP +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCG
Sbjct: 61 VSS-------ADPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSGLCG 113
Query: 152 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
AAL V+A H + + +++ +V +CE+TL KRL EFE+T + LT+++FM
Sbjct: 114 AALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTVDEFM 164
>gi|150863862|ref|XP_001382483.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
gi|149385118|gb|ABN64454.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
Length = 570
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 118/195 (60%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R++ +AL I +D I A ++ +A+ +NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 92 IRKIAHALKI--ADYIAESAGGWFKLALTQNFVQGRRSQNVLAACLYVACRKERTHHMLI 149
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L+L + L I L DPSIF+ F ++L KV
Sbjct: 150 DFSSRLQISVYSLGATFLKLVKALNIVK----LPLADPSIFIQHFAEKLDFKEKATKVVK 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + + S+IV + H+ E TL KRL
Sbjct: 206 DAVKLAHQMSSDWIDAGRRPAGIAGACVLLAARMNNFRRTHSEIVAVAHVAEETLQKRLN 265
Query: 187 EFENTDSGSLTIEDF 201
EF+ T SG LT+ F
Sbjct: 266 EFKKTASGVLTVSQF 280
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAA 391
D + S ++ SD DD V EE K+ IW +N +++ Q K EA
Sbjct: 436 DILAKVSSSTELNSDDDDEVVLESELTPEEASIKERIWTGLNHDFMVAQERKRLKQEADE 495
Query: 392 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 451
+ K + QE A +V + +G A TA E+
Sbjct: 496 LTGNTSGTTRKKRARTAPEVVQEYGVKDALSVI-----------GVDERTGEALTAAESA 544
Query: 452 RRMLTKKRLSSKINYDVLEKLFDDSV 477
+ ML+KK S KINYD ++ LF +S+
Sbjct: 545 KIMLSKKSFSKKINYDRIDDLFSNSM 570
>gi|50287787|ref|XP_446323.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525630|emb|CAG59247.1| unnamed protein product [Candida glabrata]
Length = 598
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 125/202 (61%), Gaps = 7/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ A +R + +ALNI D IV + ++Y +A+A NF +GRR++ V A+CLY+ACR++
Sbjct: 82 LNNAKKKLRAVGHALNI--PDYIVEASHQWYKLALAYNFVQGRRSQNVIAACLYIACRKE 139
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+LIDFS+ L ++VY +GA +L++ + L I L DPS+F+ F ++L G
Sbjct: 140 MTHHMLIDFSSRLQVSVYSIGATFLKMVKRLQITK----LPLADPSLFIQHFAEKLELGE 195
Query: 121 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K KV A + M DW+ GR+P+G+ GA + ++ + L+ + S+IV + H+ E
Sbjct: 196 KKIKVVRDAVKLAQRMSNDWMFEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEE 255
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
TL +RL EF+ T + SL++++F
Sbjct: 256 TLQQRLNEFKGTKAASLSVKEF 277
>gi|167516968|ref|XP_001742825.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779449|gb|EDQ93063.1| predicted protein [Monosiga brevicollis MX1]
Length = 285
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 116/195 (59%), Gaps = 8/195 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++Q+ N + + + +A +Y AV FT+GR E V A+CLY+ CRQ+ +L+
Sbjct: 84 IQQLANKMQMNSHH--IDMAVNYYKQAVEHRFTQGRPKEHVVAACLYIVCRQQKTSHMLL 141
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
DFS+ L +NVY+L A Y+QLC L + L VDP +++ +F + G +V
Sbjct: 142 DFSDQLRVNVYKLAATYMQLCNKLLTS-----LPVVDPVLYIPRFAHHMRFGELTHEVSK 196
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA I++ MKRDWI GR+PSG+CGAAL ++A HG + + D+ + VH+ T+ RL
Sbjct: 197 TALRIVSRMKRDWIHVGRRPSGVCGAALLLAARMHGFQRNLQDVQQAVHVGIQTVRARLE 256
Query: 187 EFENTDSGSLTIEDF 201
+F NT+S LT E F
Sbjct: 257 DFGNTESSKLTPEQF 271
>gi|68072423|ref|XP_678125.1| transcription factor IIIb subunit [Plasmodium berghei strain ANKA]
gi|56498490|emb|CAH96336.1| transcription factor IIIb subunit, putative [Plasmodium berghei]
Length = 728
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 125/202 (61%), Gaps = 9/202 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K + +++++ + L++ S + + A+R Y +A+ RNFT GR V ASCLY CR++
Sbjct: 77 LQKGYINIQKIADNLHL--STQHIEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRRE 134
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P +LIDFS+ L LG +L+L ++L+I+ + +DPS+FL +F +L L
Sbjct: 135 KSPIMLIDFSDILQT-PKPLGKTFLKLLRLLHIS-----VPNIDPSLFLERFAYKLNLKN 188
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
KV T ++ +M RDWI+TGR+P+GLCGA+L ++ HG+ + + I ++V I
Sbjct: 189 DIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGININSNTIAEVVRISNP 248
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T++KRL EF+NT+ + +F
Sbjct: 249 TIIKRLYEFKNTNIAKIKASEF 270
>gi|255721757|ref|XP_002545813.1| hypothetical protein CTRG_00594 [Candida tropicalis MYA-3404]
gi|240136302|gb|EER35855.1| hypothetical protein CTRG_00594 [Candida tropicalis MYA-3404]
Length = 553
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 129/480 (26%), Positives = 220/480 (45%), Gaps = 78/480 (16%)
Query: 21 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 80
D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LIDFS+ L I+VY L
Sbjct: 106 DYIADAAAEWFRLALTLNFVQGRRSHNVLATCLYVACRKERTHHMLIDFSSRLQISVYSL 165
Query: 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDW 139
GA +L++ + L+I L DPS+F+ F ++L KV A + M DW
Sbjct: 166 GATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAKDAVKLAHRMAADW 221
Query: 140 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIE 199
I GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL EF+ T +G L+I+
Sbjct: 222 IHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLNEFKKTKAGQLSIK 281
Query: 200 DFMARKKELHEGVAANLP----NNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTI 255
F +E+ ++N P N ++ ++ + +DT +E I
Sbjct: 282 SF----REVEHLESSNPPSFEKNRAMELKIAKKLQQQQQDT------------FEGLTKI 325
Query: 256 SEGLEGGADPPAFQVAERE---RMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGV 312
+E G D P +V + E +++ + + + ++ + M R+ K++ E+
Sbjct: 326 TEA--NGDDIPLKKVDKEELQKQILLNTILSDITITSDTLNEQMDRILKMKKTSLENSLY 383
Query: 313 PKNCTTQTASNEGEGDHTKT-------------PGVDATTE--ASDGSDNFSDIDDFEVD 357
T SN E D K P D E +S+ N D D+ ++
Sbjct: 384 K---TPYELSNSQESDLDKIWDMNRPRNLVKNLPKTDEILEKVSSEMELNSDDDDEIVME 440
Query: 358 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 417
L EEE K+ IW +N +Y+ EQ K + +EA EL
Sbjct: 441 SKL-TEEEIAIKERIWTGLNHDYMVEQEKK-------RLKMEAD------------ELTG 480
Query: 418 AAAAAVAKSRKEKQQKRAA----------EAKNSGPAQTALEATRRMLTKKRLSSKINYD 467
+ + +R++K + E G ++A ++ +R + K +S KINYD
Sbjct: 481 NTSNSSGGNRRKKNKNSLPPELRKDFGDIELDEDGTPRSAADSAKRYIAKTSVSKKINYD 540
>gi|388583139|gb|EIM23442.1| BRF1-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 806
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 118/195 (60%), Gaps = 8/195 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+RQ+ AL I E+ + +R Y +AV NF +GR+ + ++CLY ACR + +LI
Sbjct: 81 VRQLAAALRISEA--VAESGERIYTLAVQNNFIRGRKAVYIVSACLYAACRLQKDSHMLI 138
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
DFS++L INV+ LG YL+L + L + L ++DPSI++ +F L G ++V
Sbjct: 139 DFSDFLQINVFALGTTYLRLVERLDLK-----LPEMDPSIYIQRFASLLEFGQETQRVAS 193
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + D+I+ GR+P+G+CGAAL ++A + + S +IV++V I + T+ KRL
Sbjct: 194 DATRLCRRFDEDFISHGRRPAGICGAALLLAARMNNFRRSVEEIVQVVKIADVTVQKRLD 253
Query: 187 EFENTDSGSLTIEDF 201
EF + +G LTIEDF
Sbjct: 254 EFSRSTAGDLTIEDF 268
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 32/128 (25%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D +D+ E+D + E+E K+ IW E N++YLE+ A +A
Sbjct: 658 DELQGLDESELDDMILGEDEVRVKERIWMEFNKDYLEKIALHQATG-------------- 703
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
Q Q+ S + A EA ++L ++++S KIN
Sbjct: 704 ----QDQQKKPRRKKRKAKDQ--------------SAKPENAAEAASQVLKQRKISKKIN 745
Query: 466 YDVLEKLF 473
Y+ L+ LF
Sbjct: 746 YNALDGLF 753
>gi|345498426|ref|XP_001607399.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Nasonia
vitripennis]
Length = 668
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 112/180 (62%), Gaps = 6/180 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ + FY +A+ R+ T+GR+ A+C+Y+ CR + +LID S+ L I V+ELG
Sbjct: 106 IDTSVNFYKMALNRHLTRGRKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRT 165
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 142
YL+ Q L I + +DP +++ +F ++L G +V TA ++ MKRD I +
Sbjct: 166 YLRFTQALCIN-----IPSMDPCLYIMRFANKLEFGDKTHEVSMTALRVVQRMKRDSIHS 220
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGAAL ++A H S SDI+KIV + E+TL KRLIEF T S +LT+++FM
Sbjct: 221 GRRPSGLCGAALLMAARLHEFNRSPSDIIKIVKVHESTLRKRLIEFGETPSSALTLDEFM 280
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 35/144 (24%)
Query: 336 DATTEAS-------DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 388
DA+ E+S +G + +D+DD E+D Y+ +E+E +K +W ++N +YL
Sbjct: 412 DASKESSALSFENLEGEIDITDLDDEELDSYIMSEKEAQFKSSLWNKVNEKYL------- 464
Query: 389 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 448
Q +E +A+ + EK+++R A+ KN PA +A
Sbjct: 465 ---------------------QDQKEKEEKRQKELAEGKPEKKKRRTAKKKNQNPANSAG 503
Query: 449 EATRRMLTKKRLSSKINYDVLEKL 472
EA +ML +KR+S+KINY+VL+ L
Sbjct: 504 EAIEKMLQEKRISTKINYEVLKSL 527
>gi|17531397|ref|NP_495526.1| Protein BRF-1 [Caenorhabditis elegans]
gi|351065110|emb|CCD66264.1| Protein BRF-1 [Caenorhabditis elegans]
Length = 759
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 138/484 (28%), Positives = 213/484 (44%), Gaps = 95/484 (19%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
++ A FY + V+RN T+GR V A C+Y+ CR ++ LL+DFS+ INV++LG
Sbjct: 102 MNTAFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRN 161
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 142
L + L I L DP +++ +F L G +K V + A ++ MKRDW++T
Sbjct: 162 LNYLSRSLRIN-----LPSTDPCLYIMRFACVLDFGDKQKEVVNLATRLVQRMKRDWMST 216
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+G+CGAAL ++A + S +DIV++VHI E + KRL EF T SGSLTI++F
Sbjct: 217 GRRPTGICGAALLIAARSLNFNRSINDIVRVVHISEGVIRKRLDEFSQTPSGSLTIDEFS 276
Query: 203 ARKKELHEGVAA-----------NLPNNGPKVSGMNEVLC--------------KHKDTG 237
E E A L + M E L K K +
Sbjct: 277 TVDLEHSEDPPAYRESRRKAREDQLRKEAEQAESMKEQLGEMEAHVEAALDKKRKEKFSK 336
Query: 238 KPFACGLCRSCYEE---FMTISE------GLEGGADPPAFQVAERERMVKASAEENSSFE 288
P+A + + +E T++E GLE GAD E R + N++ E
Sbjct: 337 SPYARMISENLGKENDKMQTLTETVVESSGLEKGAD-------EMVRNEIINTVFNAAEE 389
Query: 289 RESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNF 348
S + + DK + P ES+G+ + + P V+A E
Sbjct: 390 DPCTSNSLEKYDKYR-PSLESLGIKRTSEPEPEP-------VPHPIVNADLE-------- 433
Query: 349 SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEG 408
DI D E+D Y+ E E K W + N E A KE + L K
Sbjct: 434 EDISDSEIDSYILTESEVAIKTDYWMKANGE-----AMKEIEEKKRERELNGGVK----- 483
Query: 409 LQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 468
+K+ + R + ++ A A +++ +K+LS+K+NY++
Sbjct: 484 ------------------KKKPRSNRKTDTTSTSVAS----AVEKVIAEKKLSNKVNYEM 521
Query: 469 LEKL 472
L+ L
Sbjct: 522 LKDL 525
>gi|344303886|gb|EGW34135.1| hypothetical protein SPAPADRAFT_59552, partial [Spathaspora
passalidarum NRRL Y-27907]
Length = 461
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 215/488 (44%), Gaps = 63/488 (12%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R++ +L I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 15 IRRIAASLQI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKEKTHHMLI 72
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L N KV
Sbjct: 73 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFAEKLDFRDKNTKVVK 128
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E TL +RL
Sbjct: 129 DAVKLAHRMSADWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIVAVAHVGEETLQRRLN 188
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKH----------KDT 236
EF+ T + LT++ F +KE+ + N K +++ L K+
Sbjct: 189 EFKRTRAAELTVKSFRENEKEIESSNPPSYDKNRAKEKKISKALETDGSLKDFTGLTKEQ 248
Query: 237 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM--VKASAEENSSFER--ESD 292
+ L + E+ + ++ L + E ER+ +K + + S +E E
Sbjct: 249 AQNILDNLPKEEQEKQIILNTILTDMSLTKESLTQEMERILNIKKTKLKQSLYETPYELS 308
Query: 293 SPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDID 352
S S +DK+ + PKN E +S+ N D D
Sbjct: 309 SQEESDLDKIW-----RLNWPKNLVKNLPKTEEMLQKV----------SSEVELNSDDDD 353
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D ++ L E E K+ IW +N ++L EQ K Q A
Sbjct: 354 DIVLESKL-TEAEIQIKERIWTGLNHDFLVEQERKRLK-------------------QEA 393
Query: 413 QELAAAAAAAVAKSRKE-------KQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
EL +A K R+ K + E G +A +A +K +S K+N
Sbjct: 394 DELTGNTSAQPRKKRQRSVIPPELKGEFSGVELDADGNPTSAKDAAMIYFSKTPVSKKLN 453
Query: 466 YDVLEKLF 473
Y+ L LF
Sbjct: 454 YENLTGLF 461
>gi|323337428|gb|EGA78678.1| Brf1p [Saccharomyces cerevisiae Vin13]
Length = 584
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESK 501
>gi|6321685|ref|NP_011762.1| Brf1p [Saccharomyces cerevisiae S288c]
gi|135646|sp|P29056.1|TF3B_YEAST RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|172897|gb|AAB04945.1| transcription factor III B component [Saccharomyces cerevisiae]
gi|172905|gb|AAA35148.1| transcription factor IIIB [Saccharomyces cerevisiae]
gi|258516|gb|AAB23865.1| RNA polymerase III transcription factor 4, PCF4, pol III
transcription initiation factor 4=TFIIB homolog
[Saccharomyces cerevisiae, Peptide, 596 aa]
gi|1323446|emb|CAA97275.1| BRF1 [Saccharomyces cerevisiae]
gi|1702956|emb|CAA68968.1| BRF1 [Saccharomyces cerevisiae]
gi|285812437|tpg|DAA08337.1| TPA: Brf1p [Saccharomyces cerevisiae S288c]
gi|392299501|gb|EIW10595.1| Brf1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 596
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 395 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 449
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 450 ATRRMLTKKRLSSKINYDVLEKLF 473
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|323348488|gb|EGA82733.1| Brf1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 596
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 395 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 449
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 450 ATRRMLTKKRLSSKINYDVLEKLF 473
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|365765493|gb|EHN07001.1| Brf1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 596
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 395 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 449
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 450 ATRRMLTKKRLSSKINYDVLEKLF 473
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|190406748|gb|EDV10015.1| RNA polymerase III transcription factor [Saccharomyces cerevisiae
RM11-1a]
Length = 596
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 395 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 449
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 450 ATRRMLTKKRLSSKINYDVLEKLF 473
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|151943520|gb|EDN61831.1| transcription factor TFIIIB subunit [Saccharomyces cerevisiae
YJM789]
gi|256272646|gb|EEU07623.1| Brf1p [Saccharomyces cerevisiae JAY291]
gi|259146747|emb|CAY80004.1| Brf1p [Saccharomyces cerevisiae EC1118]
gi|323354892|gb|EGA86725.1| Brf1p [Saccharomyces cerevisiae VL3]
Length = 596
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 395 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 449
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 450 ATRRMLTKKRLSSKINYDVLEKLF 473
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|349578449|dbj|GAA23615.1| K7_Brf1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 596
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 395 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 449
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRNDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 450 ATRRMLTKKRLSSKINYDVLEKLF 473
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|207344925|gb|EDZ71907.1| YGR246Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 596
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 395 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 449
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 450 ATRRMLTKKRLSSKINYDVLEKLF 473
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>gi|331244858|ref|XP_003335068.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309314058|gb|EFP90649.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 635
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 119/192 (61%), Gaps = 7/192 (3%)
Query: 11 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 70
M +AL +G D I A RF+ +AV+ F GRR+ V ASC+Y+ACR P +LID S
Sbjct: 96 MAHALRLG--DSIAESAHRFFTLAVSNGFVMGRRSPYVLASCIYVACRLAKLPTMLIDIS 153
Query: 71 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTAR 129
+ L +NV+ +GA YL+L + L + + + VDPS+++ +F L G + +KV A
Sbjct: 154 DLLQVNVFIVGATYLKLVKELCLQN----IPLVDPSLYISRFASLLEFGEDTQKVAYDAA 209
Query: 130 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189
++ DW+T GR+P+G+ GA+L ++A +G + S +IV++V + + T+ KRL EF
Sbjct: 210 RLVKRFDTDWMTAGRRPAGIAGASLLIAARMNGFRRSVLEIVQVVKMADVTIKKRLEEFR 269
Query: 190 NTDSGSLTIEDF 201
T SG +T+E+F
Sbjct: 270 VTASGKMTVEEF 281
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 30/117 (25%)
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
++ N++E K +W E+NREYLE+ A K+ A + + Y
Sbjct: 454 FILNDKEVEMKTRVWMELNREYLEKVALKKEREANGELKVAKKYN--------------- 498
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRML-TKKRLSSKINYDVLEKLF 473
+ K + R +E PA T E+ + M+ +KK+LSSKINY + + LF
Sbjct: 499 ---------RTKSKPRDSE----NPAGLTVEESVKNMINSKKKLSSKINYAIADSLF 542
>gi|225560369|gb|EEH08651.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus G186AR]
Length = 832
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 142 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 199
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 200 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 259
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 260 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVYVVKVTELTIHQRLNE 319
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 320 FKATESGDLTVDQF 333
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 475
A T EATRRML ++ S KINY +LE++++D
Sbjct: 603 ASTPAEATRRMLEQRGFSKKINYRLLEEMYED 634
>gi|325090389|gb|EGC43699.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H88]
Length = 837
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 142 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 199
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 200 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 259
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 260 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVYVVKVTELTIHQRLNE 319
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 320 FKATESGDLTVDQF 333
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 444 AQTALEATRRMLTKKRLSSKINYDVLEKLFDD 475
A T EATRRML ++ S KINY +LE++++D
Sbjct: 603 ASTPAEATRRMLEQRGFSKKINYRLLEEMYED 634
>gi|323308921|gb|EGA62153.1| Brf1p [Saccharomyces cerevisiae FostersO]
Length = 523
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 333 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK---- 387
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 388 EAAAAAAKAALE 399
EA A ++E
Sbjct: 506 EADIATGNTSVE 517
>gi|154276374|ref|XP_001539032.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414105|gb|EDN09470.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 818
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 142 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 199
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 200 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 259
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 260 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVYVVKVTELTIHQRLKE 319
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 320 FKATESGDLTVDQF 333
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 446 TALEATRRMLTKKRLSSKINYDVLEKLFDD 475
T EATRRML ++ S KINY +LE++++D
Sbjct: 603 TPAEATRRMLEQRGFSKKINYRLLEEMYED 632
>gi|323304747|gb|EGA58507.1| Brf1p [Saccharomyces cerevisiae FostersB]
Length = 523
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 333 PGVDA-TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 391
P D ++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K
Sbjct: 446 PTTDTYLSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQ 505
Query: 392 AAAKAALEASYK 403
A A S K
Sbjct: 506 EADIATGNTSVK 517
>gi|389585362|dbj|GAB68093.1| transcription factor IIIb subunit [Plasmodium cynomolgi strain B]
Length = 820
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 145/265 (54%), Gaps = 15/265 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K + +++++ + L++ S + V A+R Y +A+ RNFT GR V ASCLY CR++
Sbjct: 82 LQKGYINIQKIADHLHL--STQHVEAAQRIYLMALQRNFTMGRNNSYVAASCLYTICRRE 139
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P +LIDFS+ L V LG +L+L ++L+++ + +DPS++L +F +L L
Sbjct: 140 KSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHLS-----VPNIDPSLYLERFAHKLNLKN 194
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
KV T ++ +M RDWI TGR+P+GLCGAAL +S HG+ + I IV I
Sbjct: 195 AIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGIFVHSNTIANIVRISNP 254
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKP 239
T++KRL EF+NT + + + DF + L++ + +LP P V N K
Sbjct: 255 TIIKRLSEFKNTSTAKMKVSDF--DRIHLNDMPSNSLP---PCVIASNRKKLKQDMLKNN 309
Query: 240 FACGLCRSCYEEFMTISEGLEGGAD 264
LC S EE + + G D
Sbjct: 310 QTVSLCDS--EEIFSTVRSAKSGKD 332
>gi|385304224|gb|EIF48251.1| brf1p [Dekkera bruxellensis AWRI1499]
Length = 420
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 132/211 (62%), Gaps = 11/211 (5%)
Query: 9 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+++KN A +G D I A +++ +A+ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 93 KRIKNVASALGIQDYISDAAYQWFQLALTNNFVQGRRSQNVVAACLYIACRKEKTHHMLI 152
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++V+ +GA +L++ + L+I D L +DPS+F+ F D+L G K KV +
Sbjct: 153 DFSSRLQVSVFAVGATFLKMVKALHITD----LPLIDPSLFIQHFADKLDFGRAKLKVIN 208
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +W+ GR+PSG+ GA + ++A + + S+IV + H+ +T+ KRL
Sbjct: 209 DALKLARRMDDNWLYEGRRPSGIAGACILLAARMNNFHRTHSEIVAVSHVGXSTIQKRLW 268
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVAANLP 217
EF+ T S +L+IE F RK +E V A+LP
Sbjct: 269 EFQKTYSSNLSIEKF--RK---NEKVRASLP 294
>gi|413952557|gb|AFW85206.1| hypothetical protein ZEAMMB73_014139 [Zea mays]
Length = 350
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Query: 116 LLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
LL N V DTA I+ASMKRDW+ T RKPSGLCGAALY++AL+HG ++K+DIV +VH
Sbjct: 141 LLGRRNNDVSDTALRIVASMKRDWMQTRRKPSGLCGAALYIAALSHGCNYTKADIVSVVH 200
Query: 176 ICEATLMKRLIEFENTDSGSLTIEDFMARKKELH-EGVAANLPNNGPKVSGMNEVLCKHK 234
+CEATL KRLIEFENTDSGSLTIE+F+A E + E V+ +LP +G E+LCKHK
Sbjct: 201 VCEATLTKRLIEFENTDSGSLTIEEFLATADESNEEPVSKHLPKSG-------EILCKHK 253
Query: 235 D 235
+
Sbjct: 254 E 254
>gi|240278695|gb|EER42201.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H143]
Length = 774
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 120/200 (60%), Gaps = 4/200 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 142 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 199
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 200 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 259
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 260 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTIREVVYVVKVTELTIHQRLNE 319
Query: 188 FENTDSGSLTIEDFMARKKE 207
F+ T+SG LT++ F + + E
Sbjct: 320 FKATESGDLTVDQFRSVQLE 339
>gi|448100207|ref|XP_004199299.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359380721|emb|CCE82962.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 571
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 124/218 (56%), Gaps = 11/218 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
EK ++++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 85 FEKGKKRIKKIATALRI--PDYISDAASEWFRLALLNNFVQGRRSQNVLAACLYVACRKE 142
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
+LIDFS+ L I+VY LGA +L++ + L I L DPS+F+ F ++L
Sbjct: 143 KTHHMLIDFSSRLQISVYSLGATFLKMVKALQITK----LPLADPSLFIQHFVEKLGFRE 198
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
KV A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E
Sbjct: 199 STSKVIKDAVKLAQRMANDWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIVAVAHVAEE 258
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 217
TL +RL EF+ T SG LT+E F ++ H +N P
Sbjct: 259 TLQRRLNEFKKTKSGELTVESF----RQSHRTEISNPP 292
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 39/161 (24%)
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
D ++ S +F D+D+ E+D +L ++E K+ +W +N ++L Q K
Sbjct: 422 DLLSKISSNPKDFEDLDEEELDQFLLTDDEYKLKERVWTGLNHDFLVNQEKKRLK----- 476
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ--------------------QKRA 435
Q A EL + A K R++ + + A
Sbjct: 477 --------------QEADELTGNTSGATRKKRRQNKSPLDGIEGIGGDIVSEMGVCEAIA 522
Query: 436 AEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
+++G +A ++ RRML+KK S KINY L LFDD+
Sbjct: 523 GIGESAGEPLSAADSARRMLSKKAFSKKINYASLGDLFDDN 563
>gi|291000995|ref|XP_002683064.1| transcription factor [Naegleria gruberi]
gi|284096693|gb|EFC50320.1| transcription factor [Naegleria gruberi]
Length = 654
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 186/406 (45%), Gaps = 72/406 (17%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V A Y +A+ + TK R + V A+CLY RQ +P++L+DFS + +V+ +G
Sbjct: 124 VDRATNTYKLALLKGSTKARNPDIVAAACLYFVLRQDKQPYMLMDFSESMKTDVFLIGHC 183
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK---------KVCDTARDILAS 134
+L L L L V+P ++ +F +RLL K +V T ++AS
Sbjct: 184 FLDLMTALNFK-----LPAVEPFFYVRRFANRLLLNSGKENANQEAINRVIQTTLKLIAS 238
Query: 135 MKRDWITTGRKPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFENTDS 193
MKR+WI TGR+P+G+C AAL V+A HG K SK D+VK+V IC ATL KRL+EF+ T++
Sbjct: 239 MKRNWIQTGRRPAGICAAALLVAARIHGFKNISKQDVVKVVKICTATLTKRLMEFDKTET 298
Query: 194 GSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLC----RSCY 249
L+ E+F R++E+ NNG + D P A
Sbjct: 299 AQLSPEEFERREQEI---------NNGSFQGTI--------DVSDPPAYSRSLKEKSKLM 341
Query: 250 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPES 309
E + + LE G D V E E++++ E S E E ++R ++Q E +S
Sbjct: 342 ERYEPEQKDLERGTDVNDQDVEEAEKLIQDKEIEEISTELEKGDQ-LARAQRLQ--ESQS 398
Query: 310 IGVPKNCT--------------TQTASNEGEGD----------HTKTPGVDATTEASDGS 345
+P TQ S+E E D H+K + T + +
Sbjct: 399 KPIPDTTLPSSSLPSASQDVRQTQIKSSEFEDDESISYEESNNHSKISIENQTEQQNQIE 458
Query: 346 DNFSD----IDDFEVDGYLHNEEEKHY-----KKIIWEEMNREYLE 382
++ + + DFE D + ++ +W+E++ EYL+
Sbjct: 459 EDEEEEIDTLSDFEDDSEIEEIVITEESEIEGREKLWDELHLEYLQ 504
>gi|323333395|gb|EGA74791.1| Brf1p [Saccharomyces cerevisiae AWRI796]
Length = 404
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
>gi|448103917|ref|XP_004200158.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359381580|emb|CCE82039.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 570
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 118/202 (58%), Gaps = 7/202 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
EK ++++ AL I D I A ++ +A+ NF +GRR++ V A+CLY+ACR++
Sbjct: 85 FEKGKKRIKKIATALRI--PDYISDAASEWFRLALLNNFVQGRRSQNVLAACLYVACRKE 142
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
+LIDFS+ L I+VY LGA +L++ + L I L DPS+F+ F ++L
Sbjct: 143 KTHHMLIDFSSRLQISVYSLGATFLKMVKALQITK----LPLADPSLFIQHFVEKLDFRE 198
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
KV A + M DWI GR+P+G+ GA + ++A + + + ++IV + H+ E
Sbjct: 199 STSKVIKDAVKLAQRMANDWIHEGRRPAGIAGACVLLAARMNNFRRTHAEIVAVAHVAEE 258
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
TL +RL EF+ T SG LT+E F
Sbjct: 259 TLQRRLNEFKKTKSGELTVESF 280
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 38/160 (23%)
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
D ++ S +F D+DD E+D +L E+E K+ +W +N ++L Q K
Sbjct: 422 DLLSKISSDPKDFEDLDDEELDQFLLTEDEYKLKERVWTGLNHDFLVNQEKKRLK----- 476
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQ-------------------QKRAA 436
Q A EL + A K R++ + + A
Sbjct: 477 --------------QEADELTGNTSGATRKKRRQNKSPLDNIEGIGGDIVSEMGVSEAIA 522
Query: 437 EAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
SG +A ++ RRML+KK S KINY L LFDD+
Sbjct: 523 GIGESGEPLSAADSARRMLSKKAFSKKINYASLGDLFDDN 562
>gi|68487944|ref|XP_712189.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|68488941|ref|XP_711715.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|1174644|sp|P43072.1|TF3B_CANAL RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|619452|emb|CAA87398.1| TFIIB related subunit of TFIIIB (BRF1) [Candida albicans]
gi|46433036|gb|EAK92493.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|46433560|gb|EAK92996.1| transcription factor BRF of TFIIIB complex [Candida albicans
SC5314]
gi|238880004|gb|EEQ43642.1| hypothetical protein CAWG_01886 [Candida albicans WO-1]
Length = 553
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 134/508 (26%), Positives = 226/508 (44%), Gaps = 97/508 (19%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 95 IKRIAAALKI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLI 152
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 153 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAK 208
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 209 DAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLN 268
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMN---------------EVLC 231
EF+ T +G+L+++ F +E+ E + ++ P + K M E L
Sbjct: 269 EFKKTKAGTLSVKSF----REV-ENLESSNPPSFEKNRAMELKISKKLQQQQTDNFEDLS 323
Query: 232 KHKDTGKPFACG-----------LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKAS 280
K + K G L + + +E L D R +K S
Sbjct: 324 KMTEEEKQSVFGKLSKEEAQKQLLMNTILSDITITTENLNDQMD--------RILKMKKS 375
Query: 281 AEENSSFERESDSPFMSRVDKVQSPEPE---SIGVPKNCTTQTASNEGEGDHTKTPGVDA 337
+ ENS ++ +P+ + +P +I PKN P D
Sbjct: 376 SLENSLYK----TPYELALANGSEQDPSKIWNINKPKNLVAN------------LPKTDD 419
Query: 338 TTE--ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
+ +S+ N D D+ ++ L EEE K+ IW +N +YL EQ K
Sbjct: 420 ILQNVSSEVELNSDDDDEIVLESKL-TEEEVAIKERIWTGLNHDYLVEQEKKRLK----- 473
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKR-AAEAKN---------SGPAQ 445
Q A EL + + + +R+++ + AE + G +
Sbjct: 474 --------------QEADELTGNTSKSSSGNRRKRNKSSLPAELRKELGDIDLDEDGTPR 519
Query: 446 TALEATRRMLTKKRLSSKINYDVLEKLF 473
+A ++ + ++K +S KINYD L+ L
Sbjct: 520 SAADSAKMYISKTSVSKKINYDSLKGLL 547
>gi|299117182|emb|CBN75146.1| similar to TFIIB related factor hBRF [Ectocarpus siliculosus]
Length = 990
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 113/176 (64%), Gaps = 4/176 (2%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R + + V +N+ +GR+T + A+C+Y+ CRQ P +LID S+ L +NVY LG + +
Sbjct: 128 AARLFALCVTQNYVQGRKTMNIVAACVYIVCRQNHFPIMLIDISDKLAVNVYVLGKTFQK 187
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRK 145
L + L + + + VDP++++ +F +L L VC TA I+ SMKRD++ +GR+
Sbjct: 188 LIKHLNLQTQVPI---VDPAMYIKRFAAKLDLGSKTNAVCMTALKIIGSMKRDFLASGRQ 244
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
P+G+C AAL ++ + ++ SK +I K V +C+AT+ KRL+EFE T + LT+E+
Sbjct: 245 PAGICCAALTLATRVNRIERSKEEIRKAVKVCDATVRKRLLEFEATPTSQLTVEEL 300
>gi|393243240|gb|EJD50755.1| hypothetical protein AURDEDRAFT_182141 [Auricularia delicata
TFB-10046 SS5]
Length = 1042
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
ME + Q+ +A+ + E I A+R++ +A+ F KGR++ V A CLY+ACRQ+
Sbjct: 316 MENGRRRIMQVASAMRLPEI--IGERAQRYFKLALGTGFVKGRKSLYVVAVCLYVACRQR 373
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+LIDFS+ L +NV+ LG YL I+ + L+ +DP+ ++H+F L G
Sbjct: 374 KTSHMLIDFSDMLQVNVFSLGRTYLDFINDCNISKQD--LELIDPATYIHRFASLLEFGE 431
Query: 121 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V A ++ DW+ GR+PSG+CGAAL ++A + + S +I+++V I +
Sbjct: 432 ETSRVASDAVRLVRRFSTDWMVFGRRPSGICGAALLLAARMNNFRRSVQEIIQVVKIADT 491
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHE 210
T+MKRL EF+ T S +LT+ +F R +L E
Sbjct: 492 TIMKRLEEFKQTPSAALTVHEF--RNVDLQE 520
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 57/130 (43%), Gaps = 29/130 (22%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D +D+ E+DG + EE K+ IW E+NR+YL+ AAK A
Sbjct: 844 DELLGLDEDELDGLILTPEEVQLKERIWVEINRDYLQNLAAKMAV--------------- 888
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT--RRMLTKKRLSSK 463
E A A K RK+ Q + ++ N T L+A R L K++S K
Sbjct: 889 --------ESGGGAEAQKRKPRKKGQGNKPRDSNNP----TGLDAVDAARKLVHKKVSKK 936
Query: 464 INYDVLEKLF 473
INY LE LF
Sbjct: 937 INYAALEGLF 946
>gi|195056023|ref|XP_001994912.1| GH17498 [Drosophila grimshawi]
gi|193892675|gb|EDV91541.1| GH17498 [Drosophila grimshawi]
Length = 667
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALHRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
+P+GLCGAAL ++A H + +D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHEFSRTLADVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 29/125 (23%)
Query: 348 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 407
D++D E+D Y+ E+E K +W+ +N E+L EQ +E
Sbjct: 435 IDDLNDEELDQYVLTEQEADTKLDMWKNLNAEFLREQQERE------------------- 475
Query: 408 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 467
+ LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 476 -----ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYD 525
Query: 468 VLEKL 472
+L+ L
Sbjct: 526 ILKTL 530
>gi|149238860|ref|XP_001525306.1| hypothetical protein LELG_03234 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450799|gb|EDK45055.1| hypothetical protein LELG_03234 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 550
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 117/195 (60%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R++ AL I +D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 95 IRRLAAALKI--ADFIADAAGEWFKLALTMNFVQGRRSNNVLATCLYVACRKERTHHMLI 152
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L G KV
Sbjct: 153 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFGDKTTKVAK 208
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S S+IV I H+ E TL +RL
Sbjct: 209 DAVKLAHRMSADWIHEGRRPAGIAGACVLLAARMNNFRRSHSEIVAISHVGEETLQRRLN 268
Query: 187 EFENTDSGSLTIEDF 201
EF+ T + L++E F
Sbjct: 269 EFKKTKAAQLSVESF 283
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 29/137 (21%)
Query: 349 SDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEG 408
SD DD V+ EE K+ IW +N +Y+ EQ K
Sbjct: 431 SDDDDAIVEESQMTPEEVAMKERIWTSLNHDYMIEQERKRLK------------------ 472
Query: 409 LQAAQELAAAAAAAVAKSRKEKQ--------QKRAAEA--KNSGPAQTALEATRRMLTKK 458
Q A EL +A+ R++K QK + G ++A ++T+ L++
Sbjct: 473 -QEADELTGNTSASNGGPRRKKPRNSVPPELQKEIGDIVLDEDGTPRSAADSTKMFLSRT 531
Query: 459 RLSSKINYDVLEKLFDD 475
+S KINY+ L+ LF D
Sbjct: 532 SVSKKINYESLQGLFGD 548
>gi|300121033|emb|CBK21415.2| unnamed protein product [Blastocystis hominis]
Length = 592
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 121/195 (62%), Gaps = 9/195 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ Q+ LN+ ++ A + +AVA+NFT+GR+ V A+CLY+ACR P +LI
Sbjct: 96 ISQIAAGLNL---QNLISNACNVFNLAVAKNFTQGRKATHVCAACLYVACRMNKIPTMLI 152
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCD 126
DF++ L +V+ LG+VY+++ +L + +K +DPS+++++F ++ G VC
Sbjct: 153 DFADLLQTDVWSLGSVYMKMNNMLGLK-----MKPIDPSLYINRFASQMEFGDQLSAVCL 207
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA I M+RDWI GR+P G+ AAL ++A HG + +K DI+ IV + E TL RL
Sbjct: 208 TALRITKRMQRDWIVLGRRPLGIVAAALLLAARIHGFRRTKKDILSIVKVSEETLRIRLA 267
Query: 187 EFENTDSGSLTIEDF 201
EFE+T S SLTI+ F
Sbjct: 268 EFESTPSSSLTIDQF 282
>gi|195501939|ref|XP_002098010.1| GE24172 [Drosophila yakuba]
gi|194184111|gb|EDW97722.1| GE24172 [Drosophila yakuba]
Length = 666
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 109/179 (60%), Gaps = 6/179 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMT 283
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 350 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
D++D E+D Y+ E+E K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEDEAVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 466
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 467 DVLEKLFD 474
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|406603760|emb|CCH44785.1| Transcription factor IIIB subunit [Wickerhamomyces ciferrii]
Length = 559
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 121/195 (62%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL I E + A +++ +A++ NF KGR+++ V A+CLY++CR++ +LI
Sbjct: 94 IRAVATALKIPEY--VSDAAYQWFSLALSNNFVKGRKSQNVIAACLYISCRKEKTHHMLI 151
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS L I+VY +GA +L++ + L+I L DPS+F+ F ++L G ++ K+
Sbjct: 152 DFSARLQISVYSVGATFLKMVKALHITK----LPLADPSLFIQHFAEKLDFGDDRVKIVK 207
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA L ++A + + + +IV + H+ E TL +RL
Sbjct: 208 DAVKLAQRMSEDWIHEGRRPAGVAGACLLLAARMNNHRRTHGEIVAVAHVGEDTLQRRLN 267
Query: 187 EFENTDSGSLTIEDF 201
EF+ T +GSLTI++F
Sbjct: 268 EFKETHAGSLTIKEF 282
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 356 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 415
+D +L EEE K+ +W +N EYL EQ K A A E S P
Sbjct: 454 LDNFLLTEEESKLKERVWVGLNEEYLLEQEQKRLKAEAD----EISGHQQP--------- 500
Query: 416 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE----------ATRRMLTKKRLSSKIN 465
K RK+ K + N Q A+ A R +LTKK S KIN
Sbjct: 501 ---------KKRKKPNTKNEDDPLNDDNVQNAINKIGEGNSVSAAARSVLTKK-ASKKIN 550
Query: 466 YDVLEKLFD 474
Y L LF+
Sbjct: 551 YMALNNLFE 559
>gi|195110647|ref|XP_001999891.1| GI22827 [Drosophila mojavensis]
gi|193916485|gb|EDW15352.1| GI22827 [Drosophila mojavensis]
Length = 671
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALHRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGPKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
+P+GLCGAAL ++A H + +D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHEFSRTIADVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 29/132 (21%)
Query: 348 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 407
D++D E+D Y+ EE K +W+ +N E+L EQ +E A + + K
Sbjct: 443 IDDLNDEELDQYVLTAEEADTKLSMWKNLNAEFLREQKEREERMAKEREEGKPEKKKRKP 502
Query: 408 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 467
+ GP+ TA EA +ML +K++SSKINYD
Sbjct: 503 RKKVI-----------------------------GPSSTAGEAIEKMLQEKKISSKINYD 533
Query: 468 VLEKLFDDSVCL 479
+L+ L + CL
Sbjct: 534 ILKTLTEGMGCL 545
>gi|393904948|gb|EFO21323.2| BRF1 protein [Loa loa]
Length = 859
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 220/472 (46%), Gaps = 70/472 (14%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 VNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRT 163
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 142
L + L I L DP +++ +F L G +K V A ++ MKRDWI T
Sbjct: 164 LNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGTKQKEVVSLATRLVQRMKRDWIAT 218
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+GLCGAAL ++A + + +D+V++VHI EA + KRL EF T S +LTI++F
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTVADVVRVVHISEAVVKKRLDEFGQTPSSTLTIDEFT 278
Query: 203 ARKKELHEGVAANLPNNGP----KVSGMNEVLCKHKDTGKPFACGLCRSC---------- 248
+ E E A + ++ E L K + P + R+
Sbjct: 279 SVDLEHCEDPPAFRESRRKARELQLQKEEEALRKIELEMSPMEAEVERALEKRRKERFKR 338
Query: 249 --YEEFMTISEGLEGGADPPAFQVAERE--RMVKASAEENSSFERESDSPFMSRVDKVQS 304
Y + M+ S G E PA V E +V ++A + SD+ S +
Sbjct: 339 TQYAQMMSGSLGSESDELTPADAVVRNEIVDLVFSAARSTTPL---SDAGMSS----TYA 391
Query: 305 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD--NFSDIDDFEVDGYLHN 362
P S+G+ NE E P ++ ++E + ++ + IDD E+D Y+
Sbjct: 392 PSLVSLGI------TPIKNEVE------PIIETSSEKLNSNEELDLEGIDDEEIDTYILT 439
Query: 363 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 422
EEE K W ++N E+L+E + + + S
Sbjct: 440 EEEVDLKTRFWMKLNGEHLKEMERRRREREEEEREKDNSI-------------------- 479
Query: 423 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
K++++ K A TA EA +++ +K+LS+KINYD+L ++ D
Sbjct: 480 -----KKRRRTNGIRKKEPIVAATAQEAMEKVIHEKKLSNKINYDILREIED 526
>gi|268562683|ref|XP_002646739.1| C. briggsae CBR-BRF-1 protein [Caenorhabditis briggsae]
Length = 751
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 132/475 (27%), Positives = 212/475 (44%), Gaps = 95/475 (20%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
++ A F+ + V+RN T+GR V A CLY+ CR ++ LL+DFS+ INV++LG
Sbjct: 102 MNTAFNFFKMCVSRNLTRGRNRASVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRN 161
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 142
+ + L I L DP +++ +F L G +K V A ++ MKRDW++T
Sbjct: 162 LNFISRSLRIN-----LPATDPCLYIIRFACVLDFGDKQKEVVTLATRLVQRMKRDWMST 216
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+G+CGAAL ++A + + +DIV++VHI E+ + KRL EF T SGSLTI++F
Sbjct: 217 GRRPTGICGAALLIAARSMNFNRTINDIVRVVHISESVIRKRLDEFSQTPSGSLTIDEFS 276
Query: 203 ---------------ARKKELHEGVAANLPNNGPKVSGMNEVLCK---HKDTG--KPFAC 242
AR+K E L + M+ L + H + K
Sbjct: 277 NVDLEHSEDPPAYREARRKAREE----QLKKEAEQAESMSYQLGEMEAHVEAALDKKRKE 332
Query: 243 GLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSF-----ERESDSPFMS 297
+S Y + ++ GLE GAD ++ E + NS F E S +
Sbjct: 333 KFSKSPYAKLISEGLGLEKGAD----EMVRNEIL-------NSVFDAVEEEEPCSSNSLE 381
Query: 298 RVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVD 357
+ DK + P ES+G+ + A + E + VD D +I D E+D
Sbjct: 382 KYDKYR-PSLESLGI------KPAETQEELPRISSIPVD---------DVDIEISDSEID 425
Query: 358 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 417
Y+ E E K W + N E + K + +K + + + +
Sbjct: 426 SYILTESEVAIKTDYWMKANGEVM-----KAIEERKREREENGDFKRKRKSTKKTETVCT 480
Query: 418 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
+AA+AV K ++ +K+LS+K+NY++L+ L
Sbjct: 481 SAASAVEK----------------------------VIAEKKLSNKVNYEMLKDL 507
>gi|195570167|ref|XP_002103080.1| GD20238 [Drosophila simulans]
gi|194199007|gb|EDX12583.1| GD20238 [Drosophila simulans]
Length = 662
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHSLCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
>gi|312080782|ref|XP_003142747.1| BRF1 protein [Loa loa]
Length = 866
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 220/472 (46%), Gaps = 70/472 (14%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 VNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRT 163
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 142
L + L I L DP +++ +F L G +K V A ++ MKRDWI T
Sbjct: 164 LNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGTKQKEVVSLATRLVQRMKRDWIAT 218
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+GLCGAAL ++A + + +D+V++VHI EA + KRL EF T S +LTI++F
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTVADVVRVVHISEAVVKKRLDEFGQTPSSTLTIDEFT 278
Query: 203 ARKKELHEGVAANLPNNGP----KVSGMNEVLCKHKDTGKPFACGLCRSC---------- 248
+ E E A + ++ E L K + P + R+
Sbjct: 279 SVDLEHCEDPPAFRESRRKARELQLQKEEEALRKIELEMSPMEAEVERALEKRRKERFKR 338
Query: 249 --YEEFMTISEGLEGGADPPAFQVAERE--RMVKASAEENSSFERESDSPFMSRVDKVQS 304
Y + M+ S G E PA V E +V ++A + SD+ S +
Sbjct: 339 TQYAQMMSGSLGSESDELTPADAVVRNEIVDLVFSAARSTTPL---SDAGMSS----TYA 391
Query: 305 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD--NFSDIDDFEVDGYLHN 362
P S+G+ NE E P ++ ++E + ++ + IDD E+D Y+
Sbjct: 392 PSLVSLGI------TPIKNEVE------PIIETSSEKLNSNEELDLEGIDDEEIDTYILT 439
Query: 363 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 422
EEE K W ++N E+L+E + + + S
Sbjct: 440 EEEVDLKTRFWMKLNGEHLKEMERRRREREEEEREKDNSI-------------------- 479
Query: 423 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
K++++ K A TA EA +++ +K+LS+KINYD+L ++ D
Sbjct: 480 -----KKRRRTNGIRKKEPIVAATAQEAMEKVIHEKKLSNKINYDILREIED 526
>gi|448527192|ref|XP_003869453.1| Brf1 component of the general transcription factor for RNA
polymerase III (TFIIIB) [Candida orthopsilosis Co
90-125]
gi|380353806|emb|CCG23318.1| Brf1 component of the general transcription factor for RNA
polymerase III (TFIIIB) [Candida orthopsilosis]
Length = 552
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ P +LI
Sbjct: 96 IRRIAAALKI--PDFIAEAAGEWFKLALTMNFVQGRRSNNVLATCLYVACRKEKTPHMLI 153
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 154 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAR 209
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S S+IV I H+ + TL +RL
Sbjct: 210 DATKLAQRMSADWIHEGRRPAGVAGACVLLAARMNNFRRSHSEIVAISHVGQETLQRRLN 269
Query: 187 EFENTDSGSLTIEDF 201
EF+ T + L+++ F
Sbjct: 270 EFKKTKAAQLSVQRF 284
>gi|195443968|ref|XP_002069658.1| GK11456 [Drosophila willistoni]
gi|194165743|gb|EDW80644.1| GK11456 [Drosophila willistoni]
Length = 691
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 6/179 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTLVDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMT 283
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 28/125 (22%)
Query: 350 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
D++D E+D Y+ EEE K +W+ +N EYL+EQ +E
Sbjct: 444 DLNDDELDQYVLTEEEAVTKLNMWQTLNAEYLKEQKERE--------------------- 482
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 469
+ LA + +K K ++ GP+ TA EA +ML +K++SSKINY++L
Sbjct: 483 ---ERLAKEREEGKPEKKKRKPPRKKI----IGPSSTAGEAIEKMLQEKKISSKINYEIL 535
Query: 470 EKLFD 474
+ L D
Sbjct: 536 KTLID 540
>gi|354546095|emb|CCE42824.1| hypothetical protein CPAR2_204670 [Candida parapsilosis]
Length = 552
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ P +LI
Sbjct: 96 IRRIAAALRI--PDFIAEAAGEWFKLALTMNFVQGRRSNNVLATCLYVACRKEKTPHMLI 153
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 154 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKEKATKVAR 209
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S S+IV I H+ + TL +RL
Sbjct: 210 DATKLAQRMSADWIHEGRRPAGVAGACVLLAARMNNFRRSHSEIVAISHVGQETLQRRLN 269
Query: 187 EFENTDSGSLTIEDF 201
EF+ T + L+++ F
Sbjct: 270 EFKKTKAAQLSVKSF 284
>gi|195391494|ref|XP_002054395.1| GJ22828 [Drosophila virilis]
gi|194152481|gb|EDW67915.1| GJ22828 [Drosophila virilis]
Length = 666
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 109/179 (60%), Gaps = 6/179 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALHRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSVDPCLYIMRFANRLQLGPKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
+P+GLCGAAL ++A H + +D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHEFSRTLADVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMT 283
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 29/123 (23%)
Query: 350 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
D++D E+D Y+ E+E K +W+ +N E+L EQ +E
Sbjct: 438 DLNDEELDQYVLTEQEADTKLSMWKNLNAEFLREQKERE--------------------- 476
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 469
+ LA + +K K +K+ GP+ TA EA +ML +K++SSKINYD+L
Sbjct: 477 ---ERLAKEREEGKPEKKKRKPRKKVI-----GPSSTAGEAIEKMLQEKKISSKINYDIL 528
Query: 470 EKL 472
+ L
Sbjct: 529 KTL 531
>gi|403215833|emb|CCK70331.1| hypothetical protein KNAG_0E00630 [Kazachstania naganishii CBS
8797]
Length = 635
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 123/195 (63%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + +AL+I D I A ++Y +A++ NF +GRR++ V A+CLY+ACR++ +LI
Sbjct: 90 LRAVSHALSI--PDYITDAAFQWYKLALSYNFVQGRRSQNVIAACLYVACRKEKTHHMLI 147
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L++ + L+I L DPS+F+ F ++L G K KV
Sbjct: 148 DFSSRLQVSVYSIGATFLKMVKRLHITK----LPMADPSLFIQHFAEKLDLGDKKIKVVK 203
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 204 DAVKLAQRMSDDWMFEGRRPAGIAGACVLLACRMNNLRRTHTEIVSVSHVAEDTLQERLN 263
Query: 187 EFENTDSGSLTIEDF 201
EF+ T +G L++++F
Sbjct: 264 EFKATGAGKLSVKEF 278
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
D ++ +D+DD E++ L +EE K+ IW +N EYL EQ K A A S
Sbjct: 496 DDEEDLADVDDEEIETLLLDEEAASLKERIWVGINEEYLLEQEEKRLKEEADMIAGNTST 555
Query: 403 KNCPEGLQAAQ--------ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRM 454
K G + + + ++ A A RK + Q+ A+ SG A TA ++ + M
Sbjct: 556 KRKRNGTKGRKRKLVKIEVDTTSSVGAMDALIRKSEMQEALKLAEESGDA-TAADSVKNM 614
Query: 455 LTKKRLSSKINYDVLEKLF 473
L K S KINY+ ++ LF
Sbjct: 615 LQKASFSKKINYNAIDNLF 633
>gi|308503040|ref|XP_003113704.1| CRE-BRF-1 protein [Caenorhabditis remanei]
gi|308263663|gb|EFP07616.1| CRE-BRF-1 protein [Caenorhabditis remanei]
Length = 783
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/470 (27%), Positives = 210/470 (44%), Gaps = 86/470 (18%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
++ A F+ + V+RN T+GR V A CLY+ CR ++ LL+DFS+ INV++LG
Sbjct: 102 MNTAFNFFKMCVSRNLTRGRNRSSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRN 161
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 142
+ + L I L DP +++ +F L G +K + A ++ MKRDW++T
Sbjct: 162 LNFIARSLRIN-----LPATDPCLYIIRFACVLDFGDKQKDIVTLATRLVQRMKRDWMST 216
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+G+CGAAL ++A + S +DIV++VHI E+ + KRL EF T SGSLTI++F
Sbjct: 217 GRRPTGICGAALLIAARSMNFNRSINDIVRVVHISESVIRKRLDEFSQTPSGSLTIDEFS 276
Query: 203 ARKKELHEG-----------VAANLPNNGPKVSGMNEVLCK---HKDTG--KPFACGLCR 246
E E L + M + L + H + K +
Sbjct: 277 TVDLEHSEDPPAYREARRRAREEQLRKEAEQAESMKDQLGEMEAHVEAALDKKRKEKFSK 336
Query: 247 SCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMS----RVDKV 302
S Y + ++ GLE GAD ++ E + NS F+ + P S + DK
Sbjct: 337 SPYAKLISEGLGLEKGAD----EMVRNEIL-------NSVFDAVDEEPCSSNSLEKYDKY 385
Query: 303 QSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHN 362
+ P ES+G+ + +Q + P + + D +I D E+D Y+
Sbjct: 386 R-PSLESLGIKPSQVSQ-----------ELPRISSVPVG----DIDEEISDSEIDSYILT 429
Query: 363 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 422
E E K W + N + + K + + K + + + + +AA+A
Sbjct: 430 ESEVAIKTDYWMKANGDVM-----KAIEERRREREVNGDVKKKRKSTRKTETVCTSAASA 484
Query: 423 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
V K ++ +K+LS+K+NY++L+ L
Sbjct: 485 VEK----------------------------VIAEKKLSNKVNYEMLKDL 506
>gi|24647658|ref|NP_650616.2| Brf, isoform A [Drosophila melanogaster]
gi|281361961|ref|NP_001163636.1| Brf, isoform B [Drosophila melanogaster]
gi|15291933|gb|AAK93235.1| LD32109p [Drosophila melanogaster]
gi|23171547|gb|AAF55409.2| Brf, isoform A [Drosophila melanogaster]
gi|220945996|gb|ACL85541.1| Brf-PA [synthetic construct]
gi|272477027|gb|ACZ94932.1| Brf, isoform B [Drosophila melanogaster]
Length = 662
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + +DP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSLDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 350 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 466
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 467 DVLEKLFD 474
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|8099212|gb|AAF72065.1|AF262374_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 6/179 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + +DP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSLDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMT 283
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 350 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 466
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 467 DVLEKLFD 474
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|8099214|gb|AAF72066.1|AF262375_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 108/179 (60%), Gaps = 6/179 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A+ R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALGRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + +DP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHALCIN-----IPSLDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFMT 283
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 35/128 (27%)
Query: 350 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
D++D E+D Y+ EEE K +W+ +N EYL+EQ ++
Sbjct: 438 DLNDDELDQYVLTEEESVAKLEMWKNLNAEYLQEQKERDER------------------- 478
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNS---GPAQTALEATRRMLTKKRLSSKINY 466
+AK R+E + +R GP+ TA EA +ML +K++SSKINY
Sbjct: 479 -------------LAKEREEGKPERKKRKPRKKVIGPSSTAGEAIEKMLQEKKISSKINY 525
Query: 467 DVLEKLFD 474
++L+ L D
Sbjct: 526 EILKTLTD 533
>gi|358368039|dbj|GAA84657.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
kawachii IFO 4308]
Length = 752
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 118/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 146 QLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTIMLID 203
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 FADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGSATMQVASE 263
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 264 AVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNE 323
Query: 188 FENTDSGSLTIEDF 201
F +T+SG LT++ F
Sbjct: 324 FSSTESGELTVDQF 337
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 345 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL 539
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 448
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDADGRSTRASTPA 587
Query: 449 EATRRMLTKKRLSSKINYDVLEKLFDD 475
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|444316962|ref|XP_004179138.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
gi|387512178|emb|CCH59619.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
Length = 549
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 123/213 (57%), Gaps = 7/213 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + +AL I E + A ++Y +A+A F +GRR + V A+CLY+ACR++ P +L+
Sbjct: 86 IRAVAHALAIPE--HVTDAAFQWYKLALAHGFVRGRRAQNVVAACLYVACRKERTPHMLV 143
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS L ++VY +GA +LQL + L++ D L DPSIF+ FT+RL G + +V
Sbjct: 144 DFSARLQVSVYAVGATFLQLVRKLHVQD----LPLADPSIFIQHFTERLALGSRQVRVAR 199
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M RD + GR+P+G+ GA + ++ + L+ + ++I + H+ E TL +RL
Sbjct: 200 DAVRLAQRMARDGMQDGRRPAGVAGACVLLACRMNNLRRTHAEIAAVSHVAEETLQQRLG 259
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVAANLPNN 219
EF T + +++ F A + E + P +
Sbjct: 260 EFRATGAAKMSVAGFRASTSDTREDSDTDEPGS 292
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 342 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 401
SD ++ D+DD E+D L +EE K+ +W +N +YL EQ
Sbjct: 437 SDDPEDLGDVDDEELDSQLLDEESSAAKERVWLHLNADYLLEQ----------------- 479
Query: 402 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSG---PAQTALEATRRMLTKK 458
E + QE A AA A RK++ ++ A + G TA ++ + ML K
Sbjct: 480 -----ENKRLKQE-ADEAAGNTAHVRKKRTRQVAKIEPHDGLQIEPDTAADSVKSMLQKA 533
Query: 459 RLSSKINYDVLEKLF 473
S KINYD ++ LF
Sbjct: 534 SFSKKINYDAIDGLF 548
>gi|324501334|gb|ADY40597.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1113
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 105/179 (58%), Gaps = 6/179 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A F+ + V RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 IDTAHNFFRMCVCRNFTRGRMRSHVVAACLYMTCRLENTAHLLLDFSDVTQVNVFDLGRT 163
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 142
L + L I L DP +++ +F L G K+V A ++ MKRDWI T
Sbjct: 164 LNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEKEKEVVSLATRLVQRMKRDWIAT 218
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
GR+P+GLCGAAL ++A + + DIV++VHI E + KRL EF T S LTI++F
Sbjct: 219 GRRPTGLCGAALVLAARCYNFNRTIGDIVRVVHISETVVRKRLDEFGKTPSSELTIDEF 277
>gi|195349135|ref|XP_002041102.1| GM15370 [Drosophila sechellia]
gi|194122707|gb|EDW44750.1| GM15370 [Drosophila sechellia]
Length = 356
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 109/178 (61%), Gaps = 6/178 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
A F+ +A++R+ T+GR++ + A+C+Y+ CR + LLID S+ I YELG YL
Sbjct: 110 TALNFFKMALSRHLTRGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYL 169
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGR 144
+L L I + VDP +++ +F +RL G +V TA I+ MK+D + +GR
Sbjct: 170 KLSHSLCIN-----IPSVDPCLYIMRFANRLQLGAKTHEVSMTALRIVQRMKKDCMHSGR 224
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
+P+GLCGAAL ++A H + D++ +V I E+TL KRL EF T SG LT+E+FM
Sbjct: 225 RPTGLCGAALLIAARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAETPSGGLTLEEFM 282
>gi|339241573|ref|XP_003376712.1| transcription factor IIIBsubunit [Trichinella spiralis]
gi|316974558|gb|EFV58043.1| transcription factor IIIBsubunit [Trichinella spiralis]
Length = 605
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 229/481 (47%), Gaps = 58/481 (12%)
Query: 9 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ M+N A + S + RFY IA R+ T+GR++ V S LY++CR + P +LI
Sbjct: 86 KHMENVASQLQLSQAVTEAGFRFYKIAHGRSLTRGRKSSHVIPSLLYISCRLNAVPQMLI 145
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ +NV+ LG + L + +++ L DP I++ +F +L G + +V
Sbjct: 146 DFSDVAEVNVFTLGRTFSFLAREMHLK-----LPPTDPCIYVLRFAQKLRFGDKENQVIH 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A ++ MK DW+T GR+P+GLCGAAL ++A +G + ++V++VHI L KRL
Sbjct: 201 LALRLIQRMKNDWMTYGRRPAGLCGAALIIAARYYGFNRTIENVVRVVHIGAGVLRKRLD 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCR 246
EF T S S T+++F K E+ E + M ++L ++ KPF L
Sbjct: 261 EFCLTPSASFTLDEFC--KFEILEQCDPPSFTKNMEKEEMKKLL---EEKLKPFDEELRE 315
Query: 247 SCYEEFMTISEGLEGGADPPAFQV-AERERMVKASA-EENSSFERESDSPFMSRVDKVQS 304
+ + + + + + ++ E++ VK S E +S + +S SR+ + ++
Sbjct: 316 TEKKVQLALKQKVRSRYGASSWSSDDEQQTAVKDSVTNEVASVDYPEESSTASRLSEWEA 375
Query: 305 PEPESIGVPK--------NCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEV 356
E S+ +P + + +EG D T P T+AS+ + D+DD E+
Sbjct: 376 AEASSMSLPSWSDIIPSSSSEMTSMEDEGPVDSTLEP---QQTDASELNTL-DDLDDDEL 431
Query: 357 DGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELA 416
DGYL EE K +W +N E++EE ++ K +N
Sbjct: 432 DGYLLTPEEAALKTKLWIRVNGEFMEEYEKRKLLKEQEKEEGSKGRRNF----------- 480
Query: 417 AAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL--EKLFD 474
+KR E G A T EA +RM+ +KRLS KINY+VL E F+
Sbjct: 481 ---------------RKRGEE----GTAATPGEAIKRMVFEKRLSKKINYEVLMEEDNFE 521
Query: 475 D 475
D
Sbjct: 522 D 522
>gi|344230463|gb|EGV62348.1| BRF1-domain-containing protein [Candida tenuis ATCC 10573]
Length = 588
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 140/538 (26%), Positives = 224/538 (41%), Gaps = 120/538 (22%)
Query: 7 DMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 66
+++ + +LNI D I A ++ +A+ NF +GRR++ V A+CLY+ACR++ LL
Sbjct: 91 NIKDLAASLNI--PDYISDAAHGWFKLALNTNFVQGRRSQNVTAACLYIACRKEKTSHLL 148
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-----LPGGN 121
IDFS+ L I+V+ LGA +L++ + L I L VDPS+F+ F +RL P
Sbjct: 149 IDFSSRLQISVFSLGATFLKMVRTLNITK----LPLVDPSLFISHFAERLNLDREKPNST 204
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V A I M +D I GR+P+G+ GA + ++ +G + S+IV I H+ TL
Sbjct: 205 NQVISDAIKISFRMAKDSIVEGRRPAGVAGACVMMALRMNGFQKDPSEIVAIAHVSSDTL 264
Query: 182 MKR-------------------------------------------------LIEFENTD 192
R L+E TD
Sbjct: 265 QARMDEFKRTSSGKLRIREFRDKSEQAEAAMPPSYTRNRERSKKDIAAAEGSLVEVSETD 324
Query: 193 SGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEF 252
S S T + + E + +P N ++V + D S E++
Sbjct: 325 SRSATTHLETSADTQPQETDSQYVPQNTDSTVTNSQVTSLNTD-----------SQDEDY 373
Query: 253 M------TISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE 306
M TISE ++ D P+F V E + FER D + + + PE
Sbjct: 374 MESRGEETISE-IKVAKDAPSF-VHEMASLGFNPELLQHDFERYKD--IIEKGYSLDYPE 429
Query: 307 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEAS----DGSDNFSDIDDFEV-----D 357
PE ++TA E E D K G+ + S D + +D+DD E+ +
Sbjct: 430 PE-----PTSDSETADKEEEFDPNKPQGLVKYCKPSSYYLDLVSSSADLDDVELTEAEEN 484
Query: 358 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 417
YL+++E K+ +W MN++YL EQ K L+A +
Sbjct: 485 WYLNSDEMAKAKEQLWLSMNKDYLLEQERKR--------------------LKAETDELT 524
Query: 418 AAAAAVAKSRKEKQQKRAAEAKN-----SGPAQTALEATRRMLTKKRLSSKINYDVLE 470
+ K RK K + +G +T ++ ++M+ +K S KINYD L+
Sbjct: 525 GNTSGKKKRRKTKADREKGIIDETLEALTGEPRTPADSVKQMMQRKTFSKKINYDALD 582
>gi|440290064|gb|ELP83518.1| transcription factor IIIB 70 kDa subunit, putative [Entamoeba
invadens IP1]
Length = 545
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 115/408 (28%), Positives = 180/408 (44%), Gaps = 66/408 (16%)
Query: 3 KAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 58
+ +D RQM+ +GE ++ + +R Y +A+ R TKGRR +CLY+ CR
Sbjct: 79 RRYDVERQMRAIRRVGEMLKMKSSDIESGERLYRVAMQRGITKGRRVAYSAGACLYIICR 138
Query: 59 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 118
++ LLIDF++ L+++V +LG ++ C+ L + L VDP ++L +F + L
Sbjct: 139 RERTDHLLIDFADVLHVSVRKLGRTFIHFCKELKLD-----LPFVDPCLYLQRFGEDLAF 193
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
V TA I M RDW+ GR+PSG+CG ALY++ H + +IV +V +
Sbjct: 194 EKTADVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHNEPRTLEEIVHVVRLST 253
Query: 179 ATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGP------------KVSGM 226
T+ RL EF T S LT+E +L+E + N P +V G
Sbjct: 254 TTVRVRLKEFLRTPSADLTLE-------QLNEEDTSTTHCNPPSYTQNRLKDKAREVVGA 306
Query: 227 NEVLCKHKDTGKPFACGLCRSCYEEFMTISEG----LEG--GADPPAFQVAERE-RMVKA 279
N L K K + + EE T+ G + G D + E + K
Sbjct: 307 NVPLKKRKRNCDEYEAAEDKKLTEEIATLIGGEVEKIMGCKNIDEKPINLGSLEGKSAKD 366
Query: 280 SAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATT 339
E F+ E + V K++ + ES GV +EGE D+
Sbjct: 367 VGLEGEKFDVEK----LVDVQKIKEDDFESEGV----------DEGECQVGDCAAFDS-- 410
Query: 340 EASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 387
E+DGY ++ E +K IWEE+N E+LE++ +
Sbjct: 411 ---------------ELDGYFLDDTEAEKRKQIWEELNAEFLEKEKKR 443
>gi|167389091|ref|XP_001738814.1| transcription factor IIIB 60 kDa subunit [Entamoeba dispar SAW760]
gi|165897805|gb|EDR24877.1| transcription factor IIIB 60 kDa subunit, putative [Entamoeba
dispar SAW760]
Length = 546
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 182/404 (45%), Gaps = 58/404 (14%)
Query: 3 KAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 58
K +D RQM+ +GE ++ + +R Y +A+ TKGR+ +CLY+ CR
Sbjct: 79 KRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSAGACLYIICR 138
Query: 59 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 118
++ LLIDF++ L+++V LG +++ C+ L L VDP ++L +F + L
Sbjct: 139 RERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYLQRFGEDLAF 193
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
V TA I M RDW+ GR+PSG+CG ALY++ HG + +IV +V +
Sbjct: 194 EKTGDVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEEIVHVVRLST 253
Query: 179 ATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 238
T+ RL EF T S LT+E +L+E + N P + L + KD +
Sbjct: 254 TTVRVRLKEFLRTPSADLTLE-------QLNEDDQSTTHCNPPSYT-----LNRLKDKAR 301
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 298
GA+ P + + + A E+ E ++
Sbjct: 302 ETV--------------------GANVPLKK--RKGNGDEYEAAEDKKLTEEIETLIGGE 339
Query: 299 VDKVQS-----PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GS 345
V K+ +P ++G + + + EGE D K D +E D G
Sbjct: 340 VSKIMGCKDIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDFESEGVDEGE 399
Query: 346 DNFSDIDDF--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 387
D +F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 400 CAVGDCSEFDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|401881866|gb|EJT46148.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 2479]
gi|406701129|gb|EKD04282.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 8904]
Length = 673
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 112/188 (59%), Gaps = 4/188 (2%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G + + A+RFY +AV F +GRRT+ V ASC+YL R + +LIDFS L IN
Sbjct: 91 MGIAPSVQRGAQRFYSLAVDNKFNRGRRTDFVVASCIYLYSRFEKDALMLIDFSERLQIN 150
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASM 135
VYELGA YL+L L + +L ++DP+++ +F +RL G + V A ++
Sbjct: 151 VYELGATYLKLRSCLNL---DQILPEIDPAVYNIRFANRLDFGAASATVARDASRLIKRF 207
Query: 136 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 195
K DW+T GR+P+G+CGA L ++A + ++ ++V + T+ KRL+EF T + +
Sbjct: 208 KADWMTAGRRPAGICGACLVIAARMSDFLRTPEEVAQVVKVSPLTIKKRLVEFAGTAAAN 267
Query: 196 LTIEDFMA 203
T+E++ A
Sbjct: 268 KTVEEWRA 275
>gi|407042182|gb|EKE41189.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
nuttalli P19]
Length = 546
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 184/404 (45%), Gaps = 58/404 (14%)
Query: 3 KAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 58
K +D RQM+ +GE ++ + +R Y +A+ TKGR+ +CLY+ CR
Sbjct: 79 KRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSAGACLYIICR 138
Query: 59 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 118
++ LLIDF++ L+++V LG +++ C+ L L VDP ++L +F + L
Sbjct: 139 RERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYLQRFGEDLAF 193
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
V TA I M RDW+ GR+PSG+CG ALY++ HG + +IV +V +
Sbjct: 194 EKTGDVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEEIVHVVRLST 253
Query: 179 ATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 238
T+ RL EF T S LT+E +L+E + P+ P +N + K ++T
Sbjct: 254 TTVRVRLKEFLRTPSADLTLE-------QLNEDDQST-PHCNPPSYTLNRLKDKARET-- 303
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 298
GA+ P + + + A E+ E ++
Sbjct: 304 ----------------------VGANVPLKK--RKGNGDEYEAAEDKKLTEEIETLIGGE 339
Query: 299 VDKVQS-----PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GS 345
V K+ +P ++G + + + EGE D K D +E D G
Sbjct: 340 VSKIMGCKDIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDFESEGIDEGE 399
Query: 346 DNFSDIDDF--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 387
D +F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 400 CVVGDCSEFDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|324502344|gb|ADY41032.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1028
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 133/477 (27%), Positives = 220/477 (46%), Gaps = 78/477 (16%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A F+ + V RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV+ELG
Sbjct: 104 IDTAHNFFRMCVCRNFTRGRMRSHVVAACLYMTCRLENTAHLLLDFSDVTQVNVFELGRT 163
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 142
L + L I L DP +++ +F L G K+V A ++ MKRDWI T
Sbjct: 164 LNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEKEKEVVSLATRLVQRMKRDWIAT 218
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL----------------- 185
GR+P+GLCGAAL ++A + + DIV++VHI EA + KRL
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTIGDIVRVVHISEAVVRKRLDEFGKTPSSSLTIDEFA 278
Query: 186 -IEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCK--HKDTGKPFAC 242
++ EN + E +EL +V + E + K + + F
Sbjct: 279 IVDLENCEDPPAFRESRRRANEELKRKEEQKAKEIELEVKPLEEEVEKALERKRREKFK- 337
Query: 243 GLCRSCYEEFMTISEGLEGGADPPAFQVAE---RERMVKASAEENSSFERESDSPFMSRV 299
R+ Y + +T S E P ++A+ R +V+ + + +R P M
Sbjct: 338 ---RTLYAKMLTDSLVKES----PELRLADAMIRNEIVEVAFDAGEERQR----PLMGMS 386
Query: 300 DKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD--NFSDIDDFEVD 357
+ +P ES+G+ Q A++E G + +G+D +F +IDD E+D
Sbjct: 387 SRY-APTLESLGISDPLKPQPATSEHTGRSEE-----------NGNDELDFKEIDDDEID 434
Query: 358 GYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAA 417
Y+ + EE K +W ++N+E+L E +E A + + +
Sbjct: 435 TYILSREEAETKSRLWMKLNKEHLVEMELREQEGAERERGDDGIVR-------------- 480
Query: 418 AAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
+K K+ A+ K S A TA EA +++ +K+LS+KI+Y++L+++ D
Sbjct: 481 ---------KKRKKSTNIAKRKESIVASTAQEAITKVIQEKKLSNKIDYEILKEVMD 528
>gi|241958762|ref|XP_002422100.1| tanscription factor TFIIIB subunit, putative; transcription factor
IIIB subunit, putative [Candida dubliniensis CD36]
gi|223645445|emb|CAX40101.1| tanscription factor TFIIIB subunit, putative [Candida dubliniensis
CD36]
Length = 553
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 95 IKRIAAALKI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLI 152
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 153 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAK 208
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 209 DAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLN 268
Query: 187 EFENTDSGSLTIEDF 201
EF+ T +G L+I+ F
Sbjct: 269 EFKKTKAGELSIKSF 283
>gi|67469641|ref|XP_650799.1| transcription initiation factor IIIB chain BRF [Entamoeba
histolytica HM-1:IMSS]
gi|56467455|gb|EAL45413.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449709301|gb|EMD48588.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica KU27]
Length = 546
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 184/404 (45%), Gaps = 58/404 (14%)
Query: 3 KAFDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR 58
K +D RQM+ +GE ++ + +R Y +A+ TKGR+ +CLY+ CR
Sbjct: 79 KRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGRKFSYSAGACLYIICR 138
Query: 59 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP 118
++ LLIDF++ L+++V LG +++ C+ L L VDP ++L +F + L
Sbjct: 139 RERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFD-----LPFVDPCLYLQRFGEDLSF 193
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
V TA I M RDW+ GR+PSG+CG ALY++ HG + +IV +V +
Sbjct: 194 EKTGDVVRTAMRICQRMNRDWMHYGRRPSGICGVALYLAGRLHGEPRTLEEIVHVVRLST 253
Query: 179 ATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGK 238
T+ RL EF T S LT+E +L+E + P+ P +N + K ++T
Sbjct: 254 TTVRVRLKEFLRTPSADLTLE-------QLNEDDQST-PHCNPPSYTLNRLKDKARET-- 303
Query: 239 PFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 298
GA+ P + + + A E+ E ++
Sbjct: 304 ----------------------VGANVPLKK--RKGNGDEYEAAEDKKLTEEIETLIGGE 339
Query: 299 VDKVQS-----PEPESIGVPKNCTTQTASNEGEG-------DHTKTPGVDATTEASD-GS 345
V K+ +P ++G + + + EGE D K D +E D G
Sbjct: 340 VSKIMGCKDIDSKPLNLGTLEGKSAKDVGLEGEHFDVEKLVDINKMKEEDFESEGIDEGE 399
Query: 346 DNFSDIDDF--EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 387
D +F E+DGY +++E +K IWEE+N E+LE++ +
Sbjct: 400 CVVGDCSEFDNELDGYFLDDKEAEKRKQIWEELNAEFLEKEKKR 443
>gi|134056932|emb|CAK44279.1| unnamed protein product [Aspergillus niger]
Length = 752
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 146 QLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTIMLID 203
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 FADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGSATMQVASE 263
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 264 AVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNE 323
Query: 188 FENTDSGSLTIEDF 201
F +T+SG LT++ F
Sbjct: 324 FSSTESGELTVDQF 337
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 345 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 539
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 448
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 587
Query: 449 EATRRMLTKKRLSSKINYDVLEKLFDD 475
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|317027053|ref|XP_001400004.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus niger
CBS 513.88]
Length = 742
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 146 QLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTIMLID 203
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 FADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGSATMQVASE 263
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 264 AVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNE 323
Query: 188 FENTDSGSLTIEDF 201
F +T+SG LT++ F
Sbjct: 324 FSSTESGELTVDQF 337
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 345 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 486 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 539
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 448
A + A V K RK ++ + E ++ S A T
Sbjct: 540 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 587
Query: 449 EATRRMLTKKRLSSKINYDVLEKLFDD 475
EATRRML ++ S KINY +LE LF D
Sbjct: 588 EATRRMLERRGFSKKINYRLLESLFGD 614
>gi|350634822|gb|EHA23184.1| hypothetical protein ASPNIDRAFT_52343 [Aspergillus niger ATCC 1015]
Length = 745
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ AL I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 139 QLSRALTIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTIMLID 196
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 197 FADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGSATMQVASE 256
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 257 AVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNE 316
Query: 188 FENTDSGSLTIEDF 201
F +T+SG LT++ F
Sbjct: 317 FSSTESGELTVDQF 330
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 34/147 (23%)
Query: 345 SDNFSDID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
SDN ++ID D EV L + E K+ IW N++YL Q AK A K AL
Sbjct: 479 SDN-TEIDAAEFESDPEVSNCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRAL 532
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRA------AEAKN----SGPAQTAL 448
A + A V K RK ++ + E ++ S A T
Sbjct: 533 ------------AEADSHPGADGRVHKPRKRRRGRLGDVTYLEGEGEDGDGRSTRASTPA 580
Query: 449 EATRRMLTKKRLSSKINYDVLEKLFDD 475
EATRRML ++ S KINY +LE LF D
Sbjct: 581 EATRRMLERRGFSKKINYRLLESLFGD 607
>gi|115391595|ref|XP_001213302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194226|gb|EAU35926.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 756
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 4/196 (2%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
+ Q+ ALN+ ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 145 INQLSRALNVPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 202
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVC 125
ID ++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 203 IDLADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVA 262
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 263 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRL 322
Query: 186 IEFENTDSGSLTIEDF 201
EF +T+SG LT++ F
Sbjct: 323 NEFSSTESGELTVDQF 338
>gi|320170859|gb|EFW47758.1| BRF1 protein [Capsaspora owczarzaki ATCC 30864]
Length = 580
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 6/177 (3%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
+A + AV RNF +GR+T V A+C+YL CR P +++DFS+ +++NV+ LG Y
Sbjct: 1 MAHSVFREAVDRNFIQGRKTLIVVAACVYLVCRHDQSPIMMLDFSDAISVNVFVLGNTYS 60
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGR 144
QLC+VL+ + VDPS+ + +F L G + +V TA ++ MKRDWI GR
Sbjct: 61 QLCKVLH-----KTVPVVDPSLLILRFVSMLEFGSKENEVSRTATRLVQRMKRDWILVGR 115
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
+P+GLC AA+ ++A HG S+ +I+ +V IC+ TL +RL EFE T SG LT +F
Sbjct: 116 RPAGLCAAAILLAARMHGFSRSQREIIHVVRICDMTLRRRLEEFEETPSGQLTTVEF 172
>gi|443896379|dbj|GAC73723.1| transcription initiation factor TFIIIB, Brf1 subunit [Pseudozyma
antarctica T-34]
Length = 763
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 123/207 (59%), Gaps = 21/207 (10%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAV-----------ARNFTKGRRTEQVQASCLYLA 56
+ M +AL I + A RF+ +A+ +N+ GR++E ASCLY+A
Sbjct: 88 IHNMASALRI--PSHVADRALRFFTLALDGGASAATGDEPKNYVLGRKSEYTVASCLYVA 145
Query: 57 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 116
CR + +LIDF++ + +NV+ LG YL+L +VL + L +DPSI++ +F L
Sbjct: 146 CRMEKTTHMLIDFADAIQVNVFILGRSYLKLIRVLNLR-----LPLIDPSIYIARFA-AL 199
Query: 117 LPGGN--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 174
L G+ +KV A +++ ++DWIT GR+P+G+CGA L ++A + + S S+++++V
Sbjct: 200 LDFGDETQKVAYDASRLVSRFQKDWITEGRRPAGICGACLMLAARMNHFRRSVSEVIQVV 259
Query: 175 HICEATLMKRLIEFENTDSGSLTIEDF 201
I + TL RL EF+ T SG LT++DF
Sbjct: 260 KIADVTLRARLDEFKKTPSGQLTVQDF 286
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 332 TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 391
T G + A+ G D +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 509 TSGGRRRSVAAAGVDELADLDEEELDRFILSPEEVRIKERVWMEFNKDWMEQTLKKQLK- 567
Query: 392 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 451
L+ Q++ + + K K+ K +A + +A E+
Sbjct: 568 -----------------LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHTSSAAESA 606
Query: 452 RRMLTKKRLSSKINYDVLEKLF 473
+ ML +K+ S KINYD L LF
Sbjct: 607 KMMLKQKQFSKKINYDALNNLF 628
>gi|121706010|ref|XP_001271268.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
gi|119399414|gb|EAW09842.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
Length = 755
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 118/196 (60%), Gaps = 4/196 (2%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
+ Q+ ALNI ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 146 INQLSRALNIPES--AMKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVML 203
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVC 125
IDF++ L +NV++LG Y L L + ++ +DP +++F +L G +V
Sbjct: 204 IDFADVLMVNVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGTATMQVA 263
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 264 SEAVRIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEITINQRL 323
Query: 186 IEFENTDSGSLTIEDF 201
EF +T+S LT++ F
Sbjct: 324 NEFSSTESAELTVDQF 339
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D EV L + E K+ IW N+EYL Q AK A A+A + G++
Sbjct: 506 DPEVADCLLSPAEVEIKERIWVHENKEYLRIQQAKALKRALAEAESQP-------GMRKP 558
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
++ V + + + S PA EATRRML ++ S KINY +LE L
Sbjct: 559 RKRRKGRLGDVTYLEGDGEDADGRSTRASTPA----EATRRMLERRGFSKKINYRLLESL 614
Query: 473 FDD 475
F D
Sbjct: 615 FGD 617
>gi|327356251|gb|EGE85108.1| transcription factor TFIIIB complex subunit brf1 [Ajellomyces
dermatitidis ATCC 18188]
Length = 820
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 140 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 197
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 198 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 257
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 258 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 317
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 318 FKATESGDLTVDQF 331
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 350 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 403
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 487 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 543
Query: 404 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 461
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 544 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 602
Query: 462 SKINYDVLEKLFDD 475
KINY +LE++++D
Sbjct: 603 KKINYRLLEEMYED 616
>gi|239607291|gb|EEQ84278.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis ER-3]
Length = 818
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 140 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 197
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 198 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 257
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 258 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 317
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 318 FKATESGDLTVDQF 331
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 350 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 403
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 487 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 543
Query: 404 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 461
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 544 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 602
Query: 462 SKINYDVLEKLFDD 475
KINY +LE++++D
Sbjct: 603 KKINYRLLEEMYED 616
>gi|303317508|ref|XP_003068756.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240108437|gb|EER26611.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320038733|gb|EFW20668.1| transcription factor tfiiib complex subunit brf1 [Coccidioides
posadasii str. Silveira]
Length = 805
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 138 QLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYVACRRQDGNTIMLID 195
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 196 FADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 255
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 256 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 315
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 316 FKATESGDLTVDQF 329
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D EV L + E K+ IW N++YL Q AK A K AL A+
Sbjct: 516 DPEVRYCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRALTAA----------- 559
Query: 413 QELAAAAAAAVAKSRKEKQQKRA------AEA----KNSGPAQTALEATRRMLTKKRLSS 462
+A+ A K RK ++ + E + S A T EATR ML ++ S
Sbjct: 560 ---DPSASGAGHKPRKRRKGRMGDVTYLTGEGGDGDRASSRASTPAEATRLMLERRGFSK 616
Query: 463 KINYDVLEKLFDD 475
KINY +LEK+++D
Sbjct: 617 KINYSLLEKMYED 629
>gi|119186801|ref|XP_001244007.1| hypothetical protein CIMG_03448 [Coccidioides immitis RS]
gi|392870729|gb|EAS32553.2| transcription factor TFIIIB complex subunit brf1 [Coccidioides
immitis RS]
Length = 804
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 138 QLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYVACRRQDGNTIMLID 195
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 196 FADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAKQLEFGSSMMQVASE 255
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 256 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 315
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 316 FKATESGDLTVDQF 329
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 29/133 (21%)
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D EV L + E K+ IW N++YL Q AK A K AL A+
Sbjct: 517 DPEVRYCLLSPAEVEIKERIWVHENKDYLRAQQAK-----ALKRALTAA----------- 560
Query: 413 QELAAAAAAAVAKSRKEKQQKRA------AEA----KNSGPAQTALEATRRMLTKKRLSS 462
+A+ A K RK ++ + E + S A T EATR ML ++ S
Sbjct: 561 ---DPSASGAGHKPRKRRKGRMGDVTYLTGEGGDGDRASSRASTPAEATRLMLERRGFSK 617
Query: 463 KINYDVLEKLFDD 475
KINY +LEK+++D
Sbjct: 618 KINYSLLEKMYED 630
>gi|353234355|emb|CCA66381.1| related to BRF1-TFIIIB subunit, 70 kD [Piriformospora indica DSM
11827]
Length = 632
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 9/198 (4%)
Query: 21 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 80
D ++ A+R +A +FTKGR E + A CLY+ C ++ +LIDF++ L INVY L
Sbjct: 104 DSVISTAERHLTLAYQYSFTKGRHIEHIIAVCLYMGCLEQKTSHMLIDFADILRINVYAL 163
Query: 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDW 139
G+ YL+ + L ++PSIF+ +F L G + +KV D A I K DW
Sbjct: 164 GSTYLKWLRTLGWKP-----PLLEPSIFITRFVALLEFGEDERKVADDANRIATRFKDDW 218
Query: 140 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIE 199
I GR+ +G+CGAA+Y++A + + S +I+++V I + T++KRL EF T S +LT+
Sbjct: 219 IHEGRRTAGICGAAIYLAAQMNNYRRSIQEIMQVVKIADTTIIKRLEEFSATASANLTVG 278
Query: 200 DFMARKKELHEGVAANLP 217
DF + H AA+ P
Sbjct: 279 DFRVTE---HPTEAADPP 293
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 30/132 (22%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D+ + +D+ E+D Y+ E+E ++ +W E+N +YL AAK + + +K
Sbjct: 477 DDLTGLDEEELDAYICGEDEAQMRERVWTELNLDYLRRLAAKRIRDQSGEDPRPKKHKRK 536
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR-LSSKI 464
+ Q+ P +TA E+ R M R S +I
Sbjct: 537 SKPKQSFT-----------------------------PGKTAFESVRAMAQGNRTFSKRI 567
Query: 465 NYDVLEKLFDDS 476
NY++L++ FDD+
Sbjct: 568 NYNLLKETFDDN 579
>gi|295660722|ref|XP_002790917.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281169|gb|EEH36735.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 800
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 140 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 197
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 198 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGTSMMQVASE 257
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 258 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 317
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 318 FKATESGELTVDQF 331
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 32/137 (23%)
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 494 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 535
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 458
+E VA +++++ R + A T EATRRML K+
Sbjct: 536 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEATRRMLEKR 595
Query: 459 RLSSKINYDVLEKLFDD 475
S KINY +LE++++D
Sbjct: 596 GFSKKINYRLLEEMYED 612
>gi|164660340|ref|XP_001731293.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
gi|159105193|gb|EDP44079.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
Length = 660
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 113/192 (58%), Gaps = 20/192 (10%)
Query: 25 HVAKR---FYGIAV-----------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 70
HVA+R F+ +A+ RNF GR+++ ASCLY+ACR +LIDF+
Sbjct: 99 HVAERALRFFQLALDGGTATATGSQPRNFVLGRKSDYTVASCLYVACRMAKTTHMLIDFA 158
Query: 71 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTAR 129
+ + +NV+ LG YL+L +VL + + +DPS ++ +F L G ++V A
Sbjct: 159 DVIQVNVFVLGRSYLRLLRVLNLQ-----IPLIDPSFYISRFAALLEFGDETQRVVTDAT 213
Query: 130 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189
++ K DW+ GR+P+G+CGA L ++A + + S ++IV++V I + TL KRL EF+
Sbjct: 214 RLVTRFKMDWMVEGRRPAGICGACLLLAARMNHFRRSITEIVQVVKIADVTLRKRLEEFK 273
Query: 190 NTDSGSLTIEDF 201
T SG LTIEDF
Sbjct: 274 ATPSGQLTIEDF 285
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 25/115 (21%)
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
+L +EE K+ +W E N++YLE AA A + LEA K A
Sbjct: 483 FLLTDEEVKVKERVWMEFNKDYLE-------AALARQLKLEADQK--------------A 521
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
A +SRK + + A P +A E+ ++M+ +KR S +INYDVL LF
Sbjct: 522 GIAPAPRSRKRHKPRDGTTA----PTSSAAESAKQMMQQKRWSRRINYDVLNSLF 572
>gi|242783999|ref|XP_002480298.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218720445|gb|EED19864.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 128/218 (58%), Gaps = 10/218 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
++QM AL+I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 161 IQQMALALDIPESAQ--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQPGNTVML 218
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KV 124
ID S+ L INV+++G Y L + L + + VDP + +F R L GNK V
Sbjct: 219 IDLSDVLMINVFKVGRAYKMLLEELRLGGTVFTMNPVDPENLILRFA-RQLEFGNKTMHV 277
Query: 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +R
Sbjct: 278 AKEAARIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEVTINQR 337
Query: 185 LIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPK 222
L EF +TDSG LT++ F + +H A + P+ PK
Sbjct: 338 LNEFSSTDSGDLTVDQF----RSVHLETAHDPPSFNPK 371
>gi|297298726|ref|XP_001098066.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Macaca
mulatta]
Length = 621
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 107/178 (60%), Gaps = 8/178 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KR
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKR 263
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 62/159 (38%), Gaps = 49/159 (30%)
Query: 336 DATTEASDGSDNFSDIDDFEVD----------------------GYLHNEEEKHYKKIIW 373
D + DG + S IDD E+D Y+ NE E K +W
Sbjct: 359 DPKDASGDGELDLSGIDDLEIDRHDLSTPWCAKAKSQPHFPVLAQYILNESEARVKAELW 418
Query: 374 EEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQK 433
N EYL EQ KEA A K EL KE + K
Sbjct: 419 MRENAEYLREQREKEARIAKEK------------------ELGIY---------KEHKPK 451
Query: 434 RAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 452 KSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 490
>gi|303389255|ref|XP_003072860.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
gi|303302003|gb|ADM11500.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
Length = 395
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 131/227 (57%), Gaps = 26/227 (11%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKS 150
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+L++ +L I + +DPS+++ +F RL + +V + +++ MKRDWI G
Sbjct: 151 FLKITNMLGID-----IPLIDPSLYMPRFVSRL-RFESTEVLGLSLRLISRMKRDWIVVG 204
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF-- 201
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
Query: 202 ------------------MARKKELHEGVAANLPNNGPKVSGMNEVL 230
MA+K+E G + +P + P+ S +E+L
Sbjct: 265 TWIEKEEDPPAVKMKRMEMAKKQECESGSSEVIPYSTPQSSVDSEIL 311
>gi|226289115|gb|EEH44627.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 776
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 112 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 169
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 170 FADVLMINVFKLGRAYKALLDELRLGGNVFIMNPIDPESLIYRFAKQLEFGTSMMQVASE 229
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 230 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 289
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 290 FKATESGELTVDQF 303
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 466 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 507
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 458
+E VA +++++ R + A T EA R+ML K+
Sbjct: 508 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEAMRKMLEKR 567
Query: 459 RLSSKINYDVLEKLFDD 475
S KINY +LE++++D
Sbjct: 568 GFSKKINYRLLEEMYED 584
>gi|258563476|ref|XP_002582483.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907990|gb|EEP82391.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 791
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 138 QLSRALNIPES--ASKAAGQVFKLAVGLNFIQGRRTKTVAAICLYVACRRQDGNTVMLID 195
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F +L G + +V
Sbjct: 196 FADVLMINVFKLGRTYKALLDELRLGGNIFIMNPIDPESLIYRFAKQLEFGPSMMQVASE 255
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 256 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 315
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT++ F
Sbjct: 316 FKATESGDLTVDQF 329
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 95/243 (39%), Gaps = 48/243 (19%)
Query: 251 EFMTISEGLEGGADPPAFQVAERERMVKASAEEN----SSFERESDSPFMSRVDKVQSPE 306
+ T S G D P + +++ + EE+ S+ E E + S V S
Sbjct: 412 QLSTESNTTTSGTDKPKQPKSNKKQQIPEPTEEDLASESALESEMTALLSSGSSLVASAG 471
Query: 307 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSD-NFSDID-DFEVDGYLHNEE 364
P P N + +A +G+ SD D + ++ D D EV L +
Sbjct: 472 PPKTTPPSNAESSSAKRQGK-------------PVSDSQDIDPAEFDSDPEVRHCLLSPT 518
Query: 365 EKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVA 424
E K+ IW N++YL Q AK A A A + A
Sbjct: 519 EVEIKERIWVHENKDYLRAQQAKALKRALAAAD-------------------PSTAGGAH 559
Query: 425 KSRKEKQQK------RAAEA----KNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
K RK ++ + A E + S A T EATR ML ++ S KINY +LEKL++
Sbjct: 560 KPRKRRKGRIGDVTYLAGEGGDGDRASSRASTPAEATRLMLERRGFSKKINYSLLEKLYE 619
Query: 475 DSV 477
D V
Sbjct: 620 DDV 622
>gi|401826311|ref|XP_003887249.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
gi|392998408|gb|AFM98268.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
Length = 395
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 130/227 (57%), Gaps = 26/227 (11%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKS 150
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+L++ +L I + +DPS+++ +F RL + +V + +++ MKRDWI G
Sbjct: 151 FLKITSMLGIE-----IPLIDPSLYMPRFVSRL-RFESSEVLGLSLRLISRMKRDWIVVG 204
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF-- 201
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
Query: 202 ------------------MARKKELHEGVAANLPNNGPKVSGMNEVL 230
MA+K+E G + +P + P+ S +E L
Sbjct: 265 TWIEKEEDPPSVKVKRMEMAKKQECESGSSEMIPYSTPQSSVDSEAL 311
>gi|300708839|ref|XP_002996591.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
gi|239605905|gb|EEQ82920.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
Length = 282
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 16 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 75
N+G + + R+Y + + N +KG+ ++C+Y+ CR++ P LLIDFSN LNI
Sbjct: 82 NMGLGSNFLDCSYRYYRLLLPYNLSKGKSILYTLSACVYIVCREEKTPHLLIDFSNALNI 141
Query: 76 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 135
+V+++G + ++ +VL + + VDP++++ ++ +L N+K+ A I++ M
Sbjct: 142 DVFKIGKSFTKIVEVLNLN-----IPNVDPTLYIQRYIVKL-NLKNQKIPTLALRIMSRM 195
Query: 136 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 195
RDWITTGR+P+ +CGAA+ +++ + + S S++ K+VH+ E L KRL+E ++T +
Sbjct: 196 SRDWITTGRRPNNICGAAILIASRVYNEERSLSEVAKVVHVSEFILKKRLLEIQDTQTAD 255
Query: 196 LTIEDF 201
L++ F
Sbjct: 256 LSVNQF 261
>gi|440493061|gb|ELQ75570.1| Transcription initiation factor TFIIIB, Brf1 subunit, partial
[Trachipleistophora hominis]
Length = 429
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 117/194 (60%), Gaps = 7/194 (3%)
Query: 10 QMKNAL-NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 68
Q+KN ++G SDE+ A R+Y +++ N T+GR ++C+Y+ CRQ+ P LLID
Sbjct: 98 QIKNICGSLGLSDEVAQSAYRWYKLSLQGNLTRGRNILYTLSACIYIVCRQEKTPHLLID 157
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 128
F+ L+++V+++G +++++ L + + +DPS+FLH+F + L N K+ A
Sbjct: 158 FAQLLDLDVFKIGNIFMRIVVFLNVK-----VPLIDPSLFLHRFFSK-LKLKNGKILLFA 211
Query: 129 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+++ MKRDWI GR+P+ LCGAAL ++ + + S ++ K V + T+ RL E
Sbjct: 212 MRLISRMKRDWIVVGRRPNNLCGAALVTASRVYAEERSVLEVAKAVKVSPHTINIRLKEM 271
Query: 189 ENTDSGSLTIEDFM 202
+T S +LT+ DF
Sbjct: 272 CDTQSANLTVNDFF 285
>gi|6634765|gb|AAF19745.1|AC009917_4 Contains a Transcription factor TFIIB repeat PF|00382 [Arabidopsis
thaliana]
Length = 294
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 85/113 (75%), Gaps = 1/113 (0%)
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 148
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
+CGAALY +AL+HG+K SK+DI IV+ICEATL KRLIEF NT++ S T ++
Sbjct: 61 ICGAALYTAALSHGIKCSKTDITNIVYICEATLTKRLIEFGNTEAASFTADEL 113
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 94/217 (43%), Gaps = 72/217 (33%)
Query: 261 GGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQ 319
G+DPP+FQ AE+ERM KAS EEN DK Q+
Sbjct: 114 SGSDPPSFQRAEKERMEEKASTEEN---------------DKQQN--------------- 143
Query: 320 TASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNRE 379
SD S SD+DD E+D Y N +E H +II++ N
Sbjct: 144 ----------------------SDESSTLSDLDDGELDCYFRNPKEVHLVEIIFDHENPG 181
Query: 380 YLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAK 439
Y E++AA A A EAS AA AKSRK+K+Q+RA E K
Sbjct: 182 YDEKEAAALNACNNASNLFEAS------------------KAAAAKSRKDKRQQRAEEEK 223
Query: 440 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
N+ P TA+EA M+ +K+ N D LE+L D S
Sbjct: 224 NAPPPATAMEAVDSMVKRKKFPD-TNCDYLEELLDTS 259
>gi|71003944|ref|XP_756638.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
gi|46095578|gb|EAK80811.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
Length = 765
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 121/206 (58%), Gaps = 19/206 (9%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAV-----------ARNFTKGRRTEQVQASCLYLA 56
+ M +AL I + A RF+ +A+ +N+ GR++E ASCLY+A
Sbjct: 88 INNMASALRI--PSHVADRALRFFTLALDGGASAATGEEPKNYVLGRKSEYTVASCLYVA 145
Query: 57 CRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 116
CR + +LIDF++ + +NV+ LG YL+L +VL + L +DPSI++ +F L
Sbjct: 146 CRMEKTTHMLIDFADAIQVNVFILGRSYLKLIRVLNLR-----LPLIDPSIYIARFAALL 200
Query: 117 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
G +KV A +++ ++DWIT GR+P+G+CGA L ++A + + S S+++++V
Sbjct: 201 DFGEETQKVAYDASRLVSRFQKDWITEGRRPAGICGACLMLAARMNHFRRSVSEVIQVVK 260
Query: 176 ICEATLMKRLIEFENTDSGSLTIEDF 201
I + TL RL EF+ T +G L+++DF
Sbjct: 261 IADVTLKARLEEFKKTPTGQLSVQDF 286
>gi|212527540|ref|XP_002143927.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces marneffei ATCC 18224]
gi|210073325|gb|EEA27412.1| transcription factor TFIIIB complex subunit Brf1, putative
[Talaromyces marneffei ATCC 18224]
Length = 744
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 126/217 (58%), Gaps = 8/217 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
++QM AL+I ES + A + + +AV NF +GRRT+ V A CLY+ACR Q +L
Sbjct: 158 IQQMALALDIPESAQ--KAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQPGNTVML 215
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVC 125
ID S+ L INV+++G Y L + L + + VDP + +F +L G V
Sbjct: 216 IDLSDVLMINVFKVGRAYKMLLEELRLGGTVFTMNPVDPENLILRFAKQLEFGNRTMHVA 275
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
A I+ M RDW+TTGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL
Sbjct: 276 KEAARIVQRMNRDWMTTGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTEVTINQRL 335
Query: 186 IEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPK 222
EF +TDSG LT++ F + +H A + P+ PK
Sbjct: 336 NEFSSTDSGGLTVDQF----RSVHLETAHDPPSFNPK 368
>gi|396081366|gb|AFN82983.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon romaleae SJ-2008]
Length = 395
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 130/227 (57%), Gaps = 26/227 (11%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKS 150
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+L++ +L I + +DPS+++ +F RL + +V + +++ MKRDWI G
Sbjct: 151 FLKITTMLGID-----IPLIDPSLYMPRFVSRL-RFESSEVLGLSLRLISRMKRDWIVVG 204
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF-- 201
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
Query: 202 ------------------MARKKELHEGVAANLPNNGPKVSGMNEVL 230
MA+K+E G +P + P+ S +++L
Sbjct: 265 TWIDKEEDPPSVKLRRMEMAKKQECESGSTETVPYSTPQSSIDSDIL 311
>gi|134113394|ref|XP_774722.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257366|gb|EAL20075.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 694
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 79
S I A RF+ +AV F +GR+T+ + ASCLYL CR K +LIDFS + INV+E
Sbjct: 100 SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFE 159
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKR 137
LGA YL+L L + D + +VDP+I+ +F RL G N D +R ++ +
Sbjct: 160 LGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQVNTVAADASR-LVRRFRA 215
Query: 138 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 197
DW+T GR+P+G+CGA L ++ + ++ ++V + T+ KRL+EF TD T
Sbjct: 216 DWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPNTIKKRLLEFAQTDMAKKT 275
Query: 198 IEDF 201
+ ++
Sbjct: 276 VGEW 279
>gi|58268656|ref|XP_571484.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. neoformans JEC21]
gi|57227719|gb|AAW44177.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 691
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 79
S I A RF+ +AV F +GR+T+ + ASCLYL CR K +LIDFS + INV+E
Sbjct: 100 SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFE 159
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKR 137
LGA YL+L L + D + +VDP+I+ +F RL G N D +R ++ +
Sbjct: 160 LGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQVNTVAADASR-LVRRFRA 215
Query: 138 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 197
DW+T GR+P+G+CGA L ++ + ++ ++V + T+ KRL+EF TD T
Sbjct: 216 DWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPNTIKKRLLEFAQTDMAKKT 275
Query: 198 IEDF 201
+ ++
Sbjct: 276 VGEW 279
>gi|327294325|ref|XP_003231858.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
rubrum CBS 118892]
gi|326465803|gb|EGD91256.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
rubrum CBS 118892]
Length = 876
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTIMLID 217
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 411
DD EV L + E K+ IW N++YL Q AK A KA EA G
Sbjct: 556 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHR 611
Query: 412 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 471
++ V +E + S A T EATR ML ++ S KINY + E+
Sbjct: 612 PRKRRKGRIGDVTYLSRESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQ 670
Query: 472 LFDDS 476
++ D+
Sbjct: 671 MYGDN 675
>gi|321260370|ref|XP_003194905.1| transcription factor iiib 70 kd subunit [Cryptococcus gattii WM276]
gi|317461377|gb|ADV23118.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
gattii WM276]
Length = 696
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 79
S I A RF+ +AV F +GR+T+ + ASCLYL CR K +LIDFS + INV+E
Sbjct: 100 SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFE 159
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKR 137
LGA YL+L L + D + +VDP+I+ +F RL G N D +R ++ +
Sbjct: 160 LGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQVNTVAADASR-LVRRFRA 215
Query: 138 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 197
DW+T GR+P+G+CGA L ++ + ++ ++V + T+ KRL+EF TD T
Sbjct: 216 DWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPNTIKKRLLEFAQTDMAKKT 275
Query: 198 IEDF 201
+ ++
Sbjct: 276 VGEW 279
>gi|388852063|emb|CCF54239.1| related to BRF1-TFIIIB subunit, 70 kD [Ustilago hordei]
Length = 760
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 107/166 (64%), Gaps = 6/166 (3%)
Query: 37 RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 96
+N+ GR++E ASCLY+ACR + +LIDF++ + +NV+ LG YL+L +VL +
Sbjct: 126 KNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVFILGRSYLKLIRVLNLR-- 183
Query: 97 SNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 155
L +DPSI++ +F L G +KV A +++ ++DWIT GR+P+G+CGA L
Sbjct: 184 ---LPLIDPSIYIARFAALLDFGEETQKVAYDASRLVSRFQKDWITEGRRPAGICGACLM 240
Query: 156 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
++A + + S S+I+++V I + TL RL EF+ T +G L+++DF
Sbjct: 241 LAARMNHFRRSVSEIIQVVKIADVTLKARLEEFKKTPTGQLSVQDF 286
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D+ +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 498 DDLADLDEEELDRFILSPEEVKIKERVWMEFNKDWMEQTLKKQLK--------------- 542
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
L+ Q++ + + K K+ K +A + +A E+ + ML +K+ S KIN
Sbjct: 543 ---LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHNTSAAESAKMMLKQKQFSKKIN 595
Query: 466 YDVLEKLF 473
YD L LF
Sbjct: 596 YDALNNLF 603
>gi|398408149|ref|XP_003855540.1| hypothetical protein MYCGRDRAFT_37171 [Zymoseptoria tritici IPO323]
gi|339475424|gb|EGP90516.1| hypothetical protein MYCGRDRAFT_37171 [Zymoseptoria tritici IPO323]
Length = 730
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 7/190 (3%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNI 75
+G +D + A + + +A NF+ GR+T++V A+CLY ACR Q + LL+D + ++I
Sbjct: 127 LGITDNVSVQANQIWTLAANINFSAGRKTDEVVAACLYAACRRQTNNQILLMDIAELVHI 186
Query: 76 NVYELGAVYLQLCQVLYIADES---NVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDI 131
NV+ LG VY +C+ LYI +E+ L +++P +HK+ ++L K+V + A I
Sbjct: 187 NVFRLGEVYKDMCKELYINNENIGHQHLIELEP--LIHKYCEKLQFAEKTKQVAEDALKI 244
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191
+ M RDWI +GR P+GLCGA + ++A + + S ++V + + + T+ KR+ EF T
Sbjct: 245 IKRMNRDWIVSGRHPAGLCGACIILAARMNNFQRSVREVVYVSKVADVTIAKRIEEFRVT 304
Query: 192 DSGSLTIEDF 201
S SLT++ F
Sbjct: 305 KSASLTVQLF 314
>gi|296822208|ref|XP_002850247.1| transcription factor tfiiib complex subunit brf1 [Arthroderma otae
CBS 113480]
gi|238837801|gb|EEQ27463.1| transcription factor tfiiib complex subunit brf1 [Arthroderma otae
CBS 113480]
Length = 877
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 156 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 213
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 214 FADVLMINVFKLGRAYKALLDELRLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 273
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 274 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 333
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT+++F
Sbjct: 334 FKATESGGLTVDEF 347
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 411
DD EV L + E K+ IW N++YL Q AK A A+A +AS P G +
Sbjct: 557 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASR---PGGHRP 613
Query: 412 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 471
+ S + K E+ A T EATR ML ++ S KINY + E+
Sbjct: 614 RKRRKGRMGDVTYLSGEGKNAD--GESVAGSRASTPAEATRLMLERRGFSKKINYQLFEQ 671
Query: 472 LFDD 475
++ D
Sbjct: 672 MYGD 675
>gi|302503376|ref|XP_003013648.1| hypothetical protein ARB_00095 [Arthroderma benhamiae CBS 112371]
gi|291177213|gb|EFE33008.1| hypothetical protein ARB_00095 [Arthroderma benhamiae CBS 112371]
Length = 878
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 7/177 (3%)
Query: 301 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGY 359
++ P+P G K+ Q + + D + TP +SD N + DD EV
Sbjct: 505 EITQPKPTDDGD-KDADHQNTEPDADTDVSTTPPKPQQPVSSDVEINPLEFEDDPEVQFC 563
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 419
L + E K+ IW N++YL Q AK A KA EA G ++
Sbjct: 564 LLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHRPRKRRKGR 619
Query: 420 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
V E + S A T EATR ML ++ S KINY + E+++ D+
Sbjct: 620 IGDVTYLSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQMYGDN 675
>gi|326475285|gb|EGD99294.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
tonsurans CBS 112818]
Length = 881
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 301 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGY 359
++ P+P G K+ Q + D++ TP +SD N + DD EV
Sbjct: 502 EIAQPKPTDDGD-KDADHQNTEPNADTDNSTTPPKSQQPVSSDVEINPLEFEDDPEVQFC 560
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC--PEGLQAAQ---- 413
L + E K+ IW N++YL Q AK A A+A +AS P + +
Sbjct: 561 LLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASRSGAHRPRKRRKGRIGDV 620
Query: 414 -----ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 468
E A +VA SR A T EATR ML ++ S KINY +
Sbjct: 621 TYLSGETKNADGESVAGSR----------------ASTPAEATRLMLERRGFSKKINYQL 664
Query: 469 LEKLFDDS 476
E+++ D+
Sbjct: 665 FEQMYGDN 672
>gi|326480366|gb|EGE04376.1| transcription factor TFIIIB complex subunit brf1 [Trichophyton
equinum CBS 127.97]
Length = 881
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 301 KVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDI-DDFEVDGY 359
++ P+P G K+ Q + D++ TP +SD N + DD EV
Sbjct: 502 EIAQPKPTDDGD-KDADHQNTEPNADTDNSTTPPKSQQPVSSDVEINPLEFEDDPEVQFC 560
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC--PEGLQAAQ---- 413
L + E K+ IW N++YL Q AK A A+A +AS P + +
Sbjct: 561 LLSPAEVEIKERIWVHENKDYLRTQQAKALRKALAEAGSDASRSGAHRPRKRRKGRIGDV 620
Query: 414 -----ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDV 468
E A +VA SR A T EATR ML ++ S KINY +
Sbjct: 621 TYLSGETKNADGESVAGSR----------------ASTPAEATRLMLERRGFSKKINYQL 664
Query: 469 LEKLFDDS 476
E+++ D+
Sbjct: 665 FEQMYGDN 672
>gi|302666612|ref|XP_003024903.1| hypothetical protein TRV_00908 [Trichophyton verrucosum HKI 0517]
gi|291188980|gb|EFE44292.1| hypothetical protein TRV_00908 [Trichophyton verrucosum HKI 0517]
Length = 878
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 411
DD EV L + E K+ IW N++YL Q AK A KA EA G
Sbjct: 556 DDPEVQFCLLSPAEVEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHR 611
Query: 412 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 471
++ V E + S A T EATR ML ++ S KINY + E+
Sbjct: 612 PRKRRKGRIGDVTYLSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQ 670
Query: 472 LFDDS 476
++ D+
Sbjct: 671 MYGDN 675
>gi|449329122|gb|AGE95396.1| transcription initiation factor tfIII b subunit [Encephalitozoon
cuniculi]
Length = 395
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 115/180 (63%), Gaps = 6/180 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKS 150
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+L++ +L I + +DPS+++ +F RL N+ + + R +++ MKRDWI G
Sbjct: 151 FLKITNILGID-----IPLIDPSLYMPRFVSRLRFESNEVLGLSLR-LISRMKRDWIVVG 204
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F A
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
>gi|315056331|ref|XP_003177540.1| transcription factor TFIIIB complex subunit brf1 [Arthroderma
gypseum CBS 118893]
gi|311339386|gb|EFQ98588.1| transcription factor TFIIIB complex subunit brf1 [Arthroderma
gypseum CBS 118893]
Length = 877
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALNI ES + + +AV NF +GRRT+ V A LY+ACR Q +LID
Sbjct: 160 QLSRALNIPES--ASKAGGQVFKLAVGLNFIQGRRTKTVAAVALYIACRRQDGNTVMLID 217
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDT 127
F++ L INV++LG Y L L + ++ +DP +++F+ +L G +V
Sbjct: 218 FADVLMINVFKLGRAYKALLDELKLGGNHFIMNPIDPESLIYRFSKQLEFGPAMMQVASE 277
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL E
Sbjct: 278 AVRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNE 337
Query: 188 FENTDSGSLTIEDF 201
F+ T+SG LT+++F
Sbjct: 338 FKATESGGLTVDEF 351
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 318 TQTASNEGEGDH----TKTPGVDATTEASDGSDNFSDI--------DDFEVDGYLHNEEE 365
T T + + DH T T D+TT SDI DD EV L + E
Sbjct: 511 TSTTNGDNGTDHQNAETNTAADDSTTPPQTQQPVSSDIEINPLEFEDDPEVQFCLLSPAE 570
Query: 366 KHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAK 425
K+ IW N++YL Q AK A KA EA G ++ V
Sbjct: 571 VEIKERIWVHENKDYLRTQQAK----ALRKALAEAGSDPSRSGAHRPRKRRKGRIGDVTY 626
Query: 426 SRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
E + S A T EATR ML ++ S KINY + E+++ D+
Sbjct: 627 LSGESKNADGESVAGSR-ASTPAEATRLMLERRGFSKKINYQLFEQMYGDN 676
>gi|399949553|gb|AFP65211.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949714|gb|AFP65372.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949718|gb|AFP65375.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949887|gb|AFP65544.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399949891|gb|AFP65547.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
gi|399950057|gb|AFP65713.1| TFIIB related factor hBRF [Chroomonas mesostigmatica CCMP1168]
Length = 427
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 113/193 (58%), Gaps = 10/193 (5%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ Q NAL + S + A RF+ A R F + E V SCLY+ CR+K P LL+
Sbjct: 82 IHQFGNALKLKSSYQ--EEAYRFFVFAFQRGFVPAHKFESVCISCLYVVCRRKKTPHLLV 139
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC-- 125
DFS+ I Y++G ++L+ ++ ++ L DPS+F+++F RL GNK C
Sbjct: 140 DFSDLTQIQTYKIGGIFLKFIRIFHVH-----LPVADPSLFVYRFISRL-KIGNKFECIA 193
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
++ ++A MKR+W+ +GR+P+GLCGAA+ ++A HG++ ++ +I +I I + L RL
Sbjct: 194 RSSFRLIARMKREWMNSGRRPAGLCGAAILLAAKMHGIQKTQKEIGEIARIGDMALRTRL 253
Query: 186 IEFENTDSGSLTI 198
E E T +LT+
Sbjct: 254 REMETTSMANLTL 266
>gi|405121456|gb|AFR96225.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. grubii H99]
Length = 684
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 79
S I A RF+ +AV F +GR+T+ + ASCLYL CR K +LIDFS + INV+E
Sbjct: 100 SSAITRGAIRFFSLAVDNKFNRGRKTDYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFE 159
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKR 137
LGA YL+L L + D + +VDP+I+ +F RL G N D +R ++ +
Sbjct: 160 LGATYLKLRSTLNLLDP---MPEVDPAIYNLRFAHRLNFGAQVNIVAADASR-LVRRFRA 215
Query: 138 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 197
DW+T GR+P+G+CGA L ++ + ++ ++V + T+ KRL+EF TD T
Sbjct: 216 DWMTQGRRPAGVCGACLIIAGRMSNFLRTPDEVAQVVKVHPNTIKKRLLEFAQTDMAKKT 275
Query: 198 IEDF 201
+ ++
Sbjct: 276 VGEW 279
>gi|19173589|ref|NP_597392.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
gi|19170795|emb|CAD26569.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
Length = 395
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 115/180 (63%), Gaps = 6/180 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V + R+Y + + N +KG+ ++C+Y+ CRQ+ P +L+DFSN L+I+V+++G
Sbjct: 91 VECSFRWYKLLLQYNLSKGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKS 150
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+L++ +L I + +DPS+++ +F RL N+ + + R +++ MKRDWI G
Sbjct: 151 FLKITNMLGID-----IPLIDPSLYMPRFVSRLRFESNEVLGLSLR-LISRMKRDWIVVG 204
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
R+P+ LCGAAL +++ G + S +I KIVH+ +T+ KRL E +T+S +L+IE+F A
Sbjct: 205 RRPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEIGDTESANLSIEEFNA 264
>gi|67525317|ref|XP_660720.1| hypothetical protein AN3116.2 [Aspergillus nidulans FGSC A4]
gi|40744511|gb|EAA63687.1| hypothetical protein AN3116.2 [Aspergillus nidulans FGSC A4]
gi|259485934|tpe|CBF83378.1| TPA: transcription factor TFIIIB complex subunit Brf1, putative
(AFU_orthologue; AFUA_3G12730) [Aspergillus nidulans
FGSC A4]
Length = 713
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 110/177 (62%), Gaps = 2/177 (1%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYL 85
A + + +AV NF +GRRT+ V A CLY+ACR Q +LIDF++ L INV++LG Y
Sbjct: 121 AGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRTYK 180
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGR 144
L L + ++ +DP +++F +L G + +V A I+ M RDW+TTGR
Sbjct: 181 ALLDELRLGGNVFLMNPIDPESLIYRFAKQLEFGPSTMQVASEAVRIVQRMNRDWMTTGR 240
Query: 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
+P+G+CGAAL ++A + + + ++V +V + E T+ +RL EF +T+SG LT++ F
Sbjct: 241 RPAGICGAALILAARMNNFRRTVREVVYVVKVTEITISQRLNEFSSTESGELTVDQF 297
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D EV L E K+ IW N++YL Q AK A K ALE + + G +
Sbjct: 461 DPEVSNCLLAPHEVEIKERIWVHENKDYLRTQQAK-----ALKRALEEA--DAQPGDRKP 513
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
++ V E + + S PA EATRRML ++ S KINY +LE L
Sbjct: 514 RKRRKGRLGDVRYLEGEGEDGDGRSTRASTPA----EATRRMLERRGFSKKINYRLLETL 569
Query: 473 F 473
F
Sbjct: 570 F 570
>gi|323508031|emb|CBQ67902.1| related to BRF1-TFIIIB subunit, 70 kD [Sporisorium reilianum SRZ2]
Length = 775
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 117/193 (60%), Gaps = 22/193 (11%)
Query: 25 HVAKR---FYGIAV-----------ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 70
HVA R F+ +A+ +N+ GR++E ASCLY+ACR + +LIDF+
Sbjct: 100 HVADRSLRFFTLALDGGASAATGDEPKNYVLGRKSEYTVASCLYVACRMEKTTHMLIDFA 159
Query: 71 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTA 128
+ + +NV+ LG YL+L +VL + L +DPSI++ +F LL G +KV A
Sbjct: 160 DAIQVNVFILGRSYLKLIRVLNLR-----LPLIDPSIYIARFA-ALLDFGEETQKVAYDA 213
Query: 129 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+++ ++DW+T GR+P+G+CGA L ++A + + S S+++++V I + TL RL +F
Sbjct: 214 SRLVSRFQKDWLTEGRRPAGICGACLMLAARMNHFRRSVSEVIQVVKIADVTLKARLEDF 273
Query: 189 ENTDSGSLTIEDF 201
+ T +G L+++DF
Sbjct: 274 KKTPTGQLSVQDF 286
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D+ +D+D+ E+D ++ + EE K+ +W E N++++E+ K+
Sbjct: 504 DDLADLDEEELDRFILSPEEVKIKERVWMEFNKDWMEQMLKKQLK--------------- 548
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
L+ Q++ + + K K+ K +A + +A E+ + ML +K+ S KIN
Sbjct: 549 ---LEHDQKM----GVPIREPYKRKKPKAPRDASTAMHNTSAAESAKMMLKQKQFSKKIN 601
Query: 466 YDVLEKLF 473
YD L LF
Sbjct: 602 YDALNNLF 609
>gi|407927197|gb|EKG20097.1| Transcription factor TFIIB [Macrophomina phaseolina MS6]
Length = 714
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
Query: 6 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPF 64
D +R + +AL + D + A Y +A FT GRR + A CLY CR ++ +
Sbjct: 122 DAVRGLMSALRM-TGDNLESRAMNIYRLAARERFTHGRRPIVIAACCLYYICRTRQGNKY 180
Query: 65 LLIDFSNYLNINVYELGAVYLQLCQVLYIADES--NVLKQVDPSIFLHKFTDRLLPG--G 120
LLIDF+ + +NV++LG Y +L L+I+D S +V ++P + K+ D+L G G
Sbjct: 181 LLIDFAEKIKLNVFKLGETYKELLGKLFISDPSKRDVYTALEPEPLIKKYVDKLEFGEAG 240
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++V + A IL MKRDW+ GR+P+G+CGA + ++A + + + ++V +V + + T
Sbjct: 241 GRRVAEDAVKILKRMKRDWMVDGRQPAGVCGACIILAARMNNFRRTVREVVYVVKVADMT 300
Query: 181 LMKRLIEFENTDSGSLTIEDFMARKKEL 208
+ KRL+EF T SG LT+ +F EL
Sbjct: 301 IAKRLVEFRRTQSGQLTVNEFREHFDEL 328
>gi|453083368|gb|EMF11414.1| hypothetical protein SEPMUDRAFT_150357 [Mycosphaerella populorum
SO2202]
Length = 889
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYELGAVYL 85
A++ + +A NF+ GRRT++V A+CLY ACR+ K LL+D + L INV+ LG VY
Sbjct: 142 AEQIWVLAANINFSAGRRTDEVVAACLYAACRRRKDNKVLLMDIAELLQINVFRLGEVYK 201
Query: 86 QLCQVLYIADESNVLKQ--VDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 142
+C+ LY+ADE NV Q V+ ++K+ D+L K V A I+ M RDWI +
Sbjct: 202 DMCRELYLADE-NVGTQHMVELEPLIYKYCDKLQFAEKTKDVAADALKIIRRMNRDWIVS 260
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
GR P+GLCGA + ++A + + + ++V + + + T+ KR+ EF T + L++++F
Sbjct: 261 GRHPAGLCGACIILAARMNNFQRTVREVVFVSKVADVTIAKRVEEFRRTKASGLSVDNF 319
>gi|270010202|gb|EFA06650.1| hypothetical protein TcasGA2_TC009573 [Tribolium castaneum]
Length = 458
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 182/383 (47%), Gaps = 55/383 (14%)
Query: 98 NVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYV 156
++ +VDP +++ +F +L G ++V +TA ++ MKRD I +GR+PSGLCGAAL +
Sbjct: 2 DITLEVDPCLYILRFAAKLEFGSKTQQVANTALRLVQRMKRDSIHSGRRPSGLCGAALLI 61
Query: 157 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 216
+A H S SDIVKIV + E+TL KRLIEF +T S +LT+E+FM V
Sbjct: 62 AARLHEFGRSASDIVKIVKVHESTLRKRLIEFGDTPSSALTLEEFMT--------VDLEE 113
Query: 217 PNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISE-----GLEGGADPPAFQVA 271
+ P + KD + L R EE +I+E ++ D
Sbjct: 114 EQDPPSFKA-----ARKKDKER-----LQRLMEEEAESITELQQEIEMQLNRDAKMKSRK 163
Query: 272 ERERMVKASAEENSSFERESDSPFMSRVDKVQSPE-PESIGVP-KNCTTQTASNEGEGDH 329
++ER + E N F RES ++++ + ++ E PE P K AS
Sbjct: 164 KKERDTEEIQETN-RFIRESTMGTINQIIQEEAIEDPEIAKEPVKELGPDIASMGLASSL 222
Query: 330 TKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEA 389
T + D F DIDD E+D Y+ +E E K IW + N +LEEQ K
Sbjct: 223 EDTSNAVQPPQPLDVDMTFDDIDDEELDSYIMSEHESQNKNAIWLKRNAAFLEEQKIK-- 280
Query: 390 AAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALE 449
E LQ +E + + EK+++R K GP +A E
Sbjct: 281 ----------------AEKLQKERE----------EGKPEKKKRRNVRRKPIGPTNSAGE 314
Query: 450 ATRRMLTKKRLSSKINYDVLEKL 472
A ++L +K++SSKINYDVL+ L
Sbjct: 315 AIEKILQEKKISSKINYDVLKSL 337
>gi|452988988|gb|EME88743.1| hypothetical protein MYCFIDRAFT_107563, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 654
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 9/181 (4%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYL 85
A + + +A NF+ GR+T++V A+CLY ACR QK LL+D + + INV+ LG VY
Sbjct: 119 ANQIWTLAANINFSAGRKTDEVVAACLYAACRRQKQNKVLLMDIAELVKINVFRLGEVYK 178
Query: 86 QLCQVLYIADESNVLKQ--VDPSIFLHKFTDRLLPGGNKKVCDTARD---ILASMKRDWI 140
+C+ LY +ES V +Q VD ++K+ D+L G K D A D I+ M RDWI
Sbjct: 179 DMCRELYFNNES-VGQQHLVDLEPLIYKYCDKLQFGS--KTQDVAADALKIIKRMNRDWI 235
Query: 141 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 200
+GR P+GLCGA + ++A + + + ++V + + + T+ KR+ EF T S LT+E
Sbjct: 236 VSGRHPAGLCGACIILAARMNNFQRTVREVVFVSKVADITIAKRVEEFRRTKSAGLTVEQ 295
Query: 201 F 201
F
Sbjct: 296 F 296
>gi|452839595|gb|EME41534.1| hypothetical protein DOTSEDRAFT_73820 [Dothistroma septosporum
NZE10]
Length = 876
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 11/192 (5%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNI 75
+G + A+ + +A NF+ GRRT++V A+CLY ACR QK LL+D + YL I
Sbjct: 135 LGVETNVQTQAESIWVMASNINFSAGRRTDEVVAACLYAACRRQKENQLLLMDIAEYLKI 194
Query: 76 NVYELGAVYLQLCQVLYIADES---NVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD-- 130
NV+ LG VY L + LY+ +ES L +++P IF K+ +L G K D ++D
Sbjct: 195 NVFRLGEVYKDLGKELYLNNESVGNQNLIELEPLIF--KYCQKLQFG--DKTNDVSQDAL 250
Query: 131 -ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189
I+ M RDWI +GR P+GLCGA + ++A + + S ++V + + + T+ KR+ EF
Sbjct: 251 RIIRRMNRDWIVSGRHPAGLCGACIILAARMNNFQRSVREVVYVSKVADVTIAKRVEEFR 310
Query: 190 NTDSGSLTIEDF 201
T S L I DF
Sbjct: 311 RTKSAGLNISDF 322
>gi|426378227|ref|XP_004055844.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Gorilla
gorilla gorilla]
Length = 473
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 167/405 (41%), Gaps = 123/405 (30%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKEL------------------H 209
EFE+T + LTI++FM R K+L
Sbjct: 62 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 121
Query: 210 EGVAANLPNNGPKVSGMNEVLCKH---KDTGKPFACG---------------LCRSCYEE 251
+ + L N+ PK G L K +DT CG L + Y E
Sbjct: 122 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSL-CGEEDTEDEELEAAASHLNKDLYRE 180
Query: 252 FMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFM-SRVDKVQSPEPESI 310
+ GGA S+E S E S P + S +D + P S+
Sbjct: 181 LL-------GGA--------------PGSSEAAGSPEWGSRPPALGSLLDPL--PTAASL 217
Query: 311 GVP---KNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKH 367
G+ + C + +S D + DG + S IDD E+D Y+ NE E
Sbjct: 218 GISDSIRECISSQSS-------------DPKDASGDGELDLSGIDDLEIDRYILNESEAR 264
Query: 368 YKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSR 427
K +W N EYL EQ KEA A K EL
Sbjct: 265 VKAELWMRENAEYLREQREKEARIAKEK------------------ELGIY--------- 297
Query: 428 KEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 298 KEHKPKKSCKRREPIQASTAREAIEKMLEQKKISSKINYSVLRGL 342
>gi|269860898|ref|XP_002650166.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
gi|220066389|gb|EED43872.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
Length = 391
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 107/176 (60%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
+A ++Y + +A N +KG+ ++C+Y++CRQ++ P LLIDFSN L I++Y++G ++L
Sbjct: 96 IAFKWYKLCLANNLSKGKSILYTLSACIYISCRQEATPHLLIDFSNVLRIDMYQIGKIFL 155
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRK 145
++ + S + +D S++LH+F +L +K++ + IL MK+DWI GRK
Sbjct: 156 KIRNTFGLEFNSFDIGGIDMSLYLHRFVSQLKFKNSKEIILLSTRILNRMKKDWIMEGRK 215
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
P+ CGAA+ +++ G S+I KIVH +T+ KRL E T+S L I F
Sbjct: 216 PNNSCGAAILLASRILGEPKDISEIAKIVHAAPSTISKRLREISETESAMLNITKF 271
>gi|22035558|ref|NP_663718.1| transcription factor IIIB 90 kDa subunit isoform 3 [Homo sapiens]
gi|9909702|emb|CAC04513.1| transcription factor II B-related factor [Homo sapiens]
gi|119602313|gb|EAW81907.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
gi|119602315|gb|EAW81909.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
gi|119602318|gb|EAW81912.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_b
[Homo sapiens]
Length = 473
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 170/375 (45%), Gaps = 63/375 (16%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 62 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 121
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKASAEENS 285
+ + + +P A G S ++ T + L G + E E + A++ N
Sbjct: 122 DAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG------EEDTEDEELEAAASHLNK 175
Query: 286 SFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDA 337
RE + SPE P ++G + TA++ G D + + D
Sbjct: 176 DLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDP 234
Query: 338 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAA 397
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 235 KDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK-- 292
Query: 398 LEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTK 457
EL KE + K++ + + A TA EA +ML +
Sbjct: 293 ----------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQ 327
Query: 458 KRLSSKINYDVLEKL 472
K++SSKINY VL L
Sbjct: 328 KKISSKINYSVLRGL 342
>gi|449668786|ref|XP_002161156.2| PREDICTED: transcription factor IIIB 70 kDa subunit-like [Hydra
magnipapillata]
Length = 943
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 8/201 (3%)
Query: 4 AFDDMRQMKNAL--NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 61
A ++ +Q+ N I S + A F+ +A ++ FT GR+T V +CLYL R +
Sbjct: 354 ALENGKQLINNYGGQIKMSHHCLDSAYMFFKMAASKRFTVGRKTIYVVGACLYLVSRTEK 413
Query: 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 121
P +L+D + + ++ LG V+L L + L I VDPS+++H+F +L G
Sbjct: 414 TPHMLLDICDAIQCDIVVLGRVFLALARTLCID-----CPIVDPSLYIHRFAHQLDFGDK 468
Query: 122 K-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ +V A ILA MK+DWI GR+PS LCGAAL ++ + DIVK+V + + T
Sbjct: 469 ENEVSMAALRILARMKKDWIHLGRRPSALCGAALIIAGKLFNFNVTMDDIVKLVRMSKTT 528
Query: 181 LMKRLIEFENTDSGSLTIEDF 201
+ KRL++F T +G LT ++F
Sbjct: 529 VFKRLMDFSKTATGKLTTDEF 549
>gi|406860061|gb|EKD13121.1| Brf1-like TBP-binding domain-containing protein [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 964
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 9/202 (4%)
Query: 8 MRQMKNALN-----IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+R+ +NA+ +G + + + + +A NF +GRR EQV A CLY ACR+ S
Sbjct: 124 LREGRNAIQGMGAQLGIRESTIQNGVQIFKLAAMNNFIQGRRMEQVAAVCLYSACRKDSP 183
Query: 63 -PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 121
+LIDF++ + NV++LG + +L + IA ++ V P + +F +L G
Sbjct: 184 CRIMLIDFADLVQTNVFKLGYTFKKLHDTIAIAKAG--IQPVLPEDLIFRFAQKLEFGNQ 241
Query: 122 -KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
KV + A ++ M DW+ GR+PSG+CGA L ++A + + + +++V IV + T
Sbjct: 242 MTKVAEDAVRMVQRMSLDWMVMGRRPSGVCGACLILAARMNNFRRTITEVVYIVKVTTHT 301
Query: 181 LMKRLIEFENTDSGSLTIEDFM 202
+ KRL EF+ T S +LT+EDF+
Sbjct: 302 IQKRLEEFKQTPSSALTVEDFL 323
>gi|48735267|gb|AAH71637.1| BRF1 protein, partial [Homo sapiens]
Length = 486
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 173/381 (45%), Gaps = 63/381 (16%)
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+T
Sbjct: 9 NHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCEST 68
Query: 181 LMKRLIEFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGP 221
L KRL EFE+T + LTI++FM R K+L + ++ L
Sbjct: 69 LRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEG 128
Query: 222 KVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMT--ISEGLEGGADPPAFQVAERERMVKA 279
++S + + + +P A G S ++ T + L G + E E + A
Sbjct: 129 EISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSLCG------EEDTEDEELEAA 182
Query: 280 SAEENSSFERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTKTPGV 335
++ N RE + SPE P ++G + TA++ G D +
Sbjct: 183 ASHLNKDLYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECIS 241
Query: 336 DATTEASDGSDN----FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAA 391
+++ D S + S IDD E+D Y+ NE E K +W N EYL EQ KEA
Sbjct: 242 SQSSDPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARI 301
Query: 392 AAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEAT 451
A K EL KE + K++ + + A TA EA
Sbjct: 302 AKEK------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAI 334
Query: 452 RRMLTKKRLSSKINYDVLEKL 472
+ML +K++SSKINY VL L
Sbjct: 335 EKMLEQKKISSKINYSVLRGL 355
>gi|449296571|gb|EMC92590.1| hypothetical protein BAUCODRAFT_77565 [Baudoinia compniacensis UAMH
10762]
Length = 809
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 112/190 (58%), Gaps = 5/190 (2%)
Query: 15 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYL 73
LNI +D+ A+R +G+A NFT GR T++V +CL+ ACR+ + LL+D ++
Sbjct: 130 LNI--TDDYSIQAQRLFGLAARLNFTSGRSTDEVVGACLFAACRKNPQNSVLLMDIADIF 187
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQ-VDPSIFLHKFTDRLLPGG-NKKVCDTARDI 131
+INV+ LG VY LC+ L E+ ++Q VD + K+ +L G + V + A I
Sbjct: 188 HINVFRLGEVYKNLCKDLCYHKENLPIQQLVDVEPLIQKYCRKLEFGTRTRDVAEDAVKI 247
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191
L M RDW+ TGR P+G+CGA + ++A + + S ++V + + + T+ KR+ EF T
Sbjct: 248 LKRMNRDWMVTGRHPAGICGACIILAARMNNFRRSVREVVYVAKVADMTIAKRIEEFRRT 307
Query: 192 DSGSLTIEDF 201
+ +L+++ F
Sbjct: 308 KASTLSVDQF 317
>gi|118401704|ref|XP_001033172.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila]
gi|89287519|gb|EAR85509.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila SB210]
Length = 582
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 4/163 (2%)
Query: 42 GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN-VL 100
G A+ LY+A R + PFLL+DFS L IN+++L Y +L + L + + N L
Sbjct: 119 GSNIHHYSAAALYIALRFQKAPFLLMDFSEKLCINLFKLARCYRKLAKFLNVTLKLNERL 178
Query: 101 KQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 158
+DPSI++ +F ++L +K +V +TA +L MK DW++ GR+PS LCGAA+ ++A
Sbjct: 179 PSIDPSIYIPRFC-KMLEFNDKVDQVKETAIKLLKRMKLDWMSHGRRPSSLCGAAILIAA 237
Query: 159 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
HG K + S++ K+V++CE TL KRL EF+ TD LT E F
Sbjct: 238 RMHGFKRTTSEVCKVVYVCEETLRKRLEEFKETDVAKLTREKF 280
>gi|157128814|ref|XP_001655206.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882161|gb|EAT46386.1| AAEL002427-PB [Aedes aegypti]
Length = 644
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 114/181 (62%), Gaps = 6/181 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A F+ +A+ R+ T+GRR + A+C+Y+ CR + LLID S+ L I YELG
Sbjct: 106 IETACNFFKMALIRHLTRGRRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRT 165
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 142
YL+L Q L I + +DP I++ ++ ++L +V TA+ ++ MK+D I +
Sbjct: 166 YLKLSQALCIN-----IPSIDPCIYIMRYANKLEFAEKTHEVSMTAQRLVQRMKKDSIHS 220
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGAAL ++A H + +DIV+IV I E+TL KRL+EF T S +LT+++FM
Sbjct: 221 GRRPSGLCGAALLLAARMHEFSRTPNDIVRIVKIHESTLRKRLVEFGETPSSALTLDEFM 280
Query: 203 A 203
+
Sbjct: 281 S 281
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 28/120 (23%)
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 414
E++GY+ EEE YK ++W ++ E+L+E KE A + EG
Sbjct: 428 EINGYIMTEEEARYKDMMWNRLHAEHLKEMKEKEERLAKERE----------EG------ 471
Query: 415 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
+ EK+++++A KN GP+ +A EA +ML +K++S+KINYD+L+ L D
Sbjct: 472 ------------KPEKKKRKSARKKNIGPSNSAGEAIEKMLQEKKISTKINYDILKTLTD 519
>gi|157128816|ref|XP_001655207.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882162|gb|EAT46387.1| AAEL002427-PA [Aedes aegypti]
Length = 609
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 114/181 (62%), Gaps = 6/181 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A F+ +A+ R+ T+GRR + A+C+Y+ CR + LLID S+ L I YELG
Sbjct: 106 IETACNFFKMALIRHLTRGRRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRT 165
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITT 142
YL+L Q L I + +DP I++ ++ ++L +V TA+ ++ MK+D I +
Sbjct: 166 YLKLSQALCIN-----IPSIDPCIYIMRYANKLEFAEKTHEVSMTAQRLVQRMKKDSIHS 220
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+PSGLCGAAL ++A H + +DIV+IV I E+TL KRL+EF T S +LT+++FM
Sbjct: 221 GRRPSGLCGAALLLAARMHEFSRTPNDIVRIVKIHESTLRKRLVEFGETPSSALTLDEFM 280
Query: 203 A 203
+
Sbjct: 281 S 281
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 28/122 (22%)
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 414
E++GY+ EEE YK ++W ++ E+L+E KE A + EG
Sbjct: 428 EINGYIMTEEEARYKDMMWNRLHAEHLKEMKEKEERLAKERE----------EG------ 471
Query: 415 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
+ EK+++++A KN GP+ +A EA +ML +K++S+KINYD+L+ L D
Sbjct: 472 ------------KPEKKKRKSARKKNIGPSNSAGEAIEKMLQEKKISTKINYDILKTLTD 519
Query: 475 DS 476
+
Sbjct: 520 SA 521
>gi|330038667|ref|XP_003239664.1| TFIIB related factor hBRF [Cryptomonas paramecium]
gi|327206588|gb|AEA38766.1| TFIIB related factor hBRF [Cryptomonas paramecium]
Length = 385
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 110/193 (56%), Gaps = 9/193 (4%)
Query: 9 RQMKNALNIGESDEIVH-VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
R++ +N+ + D A R + R + + C+Y+ CR K P+LLI
Sbjct: 78 RKIAQIVNLLKLDSTFQEYAYRLFLFVFQRGIIRKYKLLITCICCVYVVCRYKKAPYLLI 137
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK--VC 125
DFS + + +LGA++L++ + D + L +DPS+F+HKF L GNK +
Sbjct: 138 DFSEIVQTQLNKLGAIFLKI-----VRDLNIFLPIIDPSLFVHKFATNL-QFGNKTNAIT 191
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
TA +++ MKRDWI+TGRKPSGLCGAAL +S+ HGLK SK +I ++V I + TL RL
Sbjct: 192 KTALRLVSKMKRDWISTGRKPSGLCGAALLISSCMHGLKRSKKEIEEVVKIGDFTLGSRL 251
Query: 186 IEFENTDSGSLTI 198
E + T +L I
Sbjct: 252 REIDKTLLSNLNI 264
>gi|429852309|gb|ELA27452.1| transcription factor tfiiib complex subunit brf1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 729
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 114/200 (57%), Gaps = 8/200 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP--FL 65
M+ + LN+GE+ V+ A + + +A NF +GR V A CLY ACR + KP +
Sbjct: 149 MQGYAHQLNLGEN--TVNTAVQIFKLASQANFVQGRTLVMVAAVCLYAACRTE-KPCRIM 205
Query: 66 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKV 124
L+D ++ +NV++LG + L ++I D N QV P +++ +L +V
Sbjct: 206 LMDLADLTQLNVFKLGRAFKALNATVFIFD--NGEGQVFPEDLIYRLASKLEFKHMTNRV 263
Query: 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
+ A ++ MK+DWI GR+PSG+CGA L ++A H + + +IV +V + T+ +R
Sbjct: 264 AEDAIRLVQRMKQDWIVMGRRPSGICGACLLMAARMHNFRRTVREIVYLVKVTTHTIQER 323
Query: 185 LIEFENTDSGSLTIEDFMAR 204
L EF TD+ +T+EDF+A+
Sbjct: 324 LTEFNVTDASKMTVEDFLAQ 343
>gi|429962700|gb|ELA42244.1| hypothetical protein VICG_00643 [Vittaforma corneae ATCC 50505]
Length = 394
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 111/176 (63%), Gaps = 6/176 (3%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R+Y + + + +KG+ ++C+Y+ CRQ+S P LLIDFSN L I+++++G V+L+
Sbjct: 94 AFRWYKLCLQYSLSKGKSILYTLSACVYITCRQESTPHLLIDFSNELRIDLFKIGKVFLK 153
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 146
+ Q+L I + +DPS+++H+F +L NK++ + + +++ MK+DWI GR+P
Sbjct: 154 IRQLLGID-----IPLIDPSLYMHRFCSQL-KFKNKEILNFSTLLVSRMKKDWILEGRRP 207
Query: 147 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
+ CGAAL +++ + +++ + VH AT+ KRL E +T+S L I+ FM
Sbjct: 208 NNSCGAALLIASRIFNEERDIAEVARAVHASIATINKRLEEMRDTESAELQIDQFM 263
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 60/151 (39%), Gaps = 46/151 (30%)
Query: 326 EGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQA 385
E H TP T D S D + F+ D +L NE+E K +IW++M EYL+E
Sbjct: 290 EETHFDTP----ITTFEDDSVEMKDAETFDFDDFLLNEDEAKTKAVIWDQMYGEYLKE-- 343
Query: 386 AKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ 445
AQE RK +++ +K G
Sbjct: 344 --------------------------AQE-----------KRKLRKESVRRHSKRHG-FN 365
Query: 446 TALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
T EA + K++SSK+NY LE LFD S
Sbjct: 366 TVEEAFLSL--DKKVSSKLNYAALEALFDPS 394
>gi|160331383|ref|XP_001712399.1| tfIIB-brf [Hemiselmis andersenii]
gi|159765847|gb|ABW98074.1| tfIIB-brf [Hemiselmis andersenii]
Length = 408
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A +F+ +A R F G++ + + S LY CRQK LLIDFS+ I ++G+V+L+
Sbjct: 98 AFKFFILATQRGFINGQKLQNLCVSSLYTVCRQKKTHHLLIDFSDITQIQTNKIGSVFLK 157
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD-TARDILASMKRDWITTGRK 145
+I D + +DPS+++ +F RL G K+ +A ++A MKR+W++TGR+
Sbjct: 158 -----FIRDLKINIPVIDPSLYIQRFVSRLQLGNKTKLVSMSALRLIARMKREWVSTGRR 212
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 200
PSGLCGAA+ ++ HGLK ++ +I IV I + + RL E T +LTI++
Sbjct: 213 PSGLCGAAILLATKMHGLKKTQKEISSIVRIGDFAIRSRLREINKTSMSNLTIKE 267
>gi|358254676|dbj|GAA56126.1| transcription initiation factor brf1 [Clonorchis sinensis]
Length = 729
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 8/189 (4%)
Query: 15 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 74
L +G ++I A RFY A+ R T+GR QV ASC+YLA RQ +L+D S+ +
Sbjct: 70 LRLG--NDIATSAFRFYQSALFRGITRGRGALQVAASCVYLAARQLRVNLMLLDLSDAVG 127
Query: 75 INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC-DTARDILA 133
INVY LG Y +L + L+++ + ++DP +++ +F +L G V TA +L
Sbjct: 128 INVYVLGHCYTELRRRLHLS-----IPEMDPCLYIERFASQLEFGDKMPVVATTAMRLLQ 182
Query: 134 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDS 193
MK+DW+TTGR+PSGL AAL V+A H ++ D+ +I I + T KRL EF T +
Sbjct: 183 RMKKDWLTTGRRPSGLAAAALLVAARIHEFNRNEEDVARIARISQQTARKRLEEFGRTPT 242
Query: 194 GSLTIEDFM 202
+L+IEDF
Sbjct: 243 SALSIEDFF 251
>gi|340522164|gb|EGR52397.1| RNA polymerase III transcription initiation factor B complex
component [Trichoderma reesei QM6a]
Length = 679
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 66
M+ LNI SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 128 MQGYAQQLNI--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 185
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 186 IDLADLVQLNVFKLGRIFKKLNEVVPIG--ADGLIPVYPEDLIWRFATKMEFHQDTAKVA 243
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 244 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTIREVVYIVKVTNHTIQNRL 303
Query: 186 IEFENTDSGSLTIEDFM 202
EF NT+S +++EDF+
Sbjct: 304 QEFNNTESSRMSVEDFL 320
>gi|358399904|gb|EHK49241.1| hypothetical protein TRIATDRAFT_290021 [Trichoderma atroviride IMI
206040]
Length = 734
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 66
M+ LNI SD +V + + +A NF +GR V A CLY ACR + +L
Sbjct: 146 MQGYAQQLNI--SDSLVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVML 203
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 204 IDLADLVQLNVFKLGRIFKKLNEVVPIG--ADGLIPVYPEDLIWRFATKMEFRQDTAKVA 261
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 262 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 321
Query: 186 IEFENTDSGSLTIEDFM 202
EF NT+S +++EDF+
Sbjct: 322 QEFNNTESSRMSVEDFL 338
>gi|358386661|gb|EHK24256.1| hypothetical protein TRIVIDRAFT_124308, partial [Trichoderma virens
Gv29-8]
Length = 659
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 66
M+ LNI SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 127 MQGYAQQLNI--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 184
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 185 IDLADLVQLNVFKLGRIFKKLNEVVPIG--TDGLIPVYPEDLIWRFATKMEFHQDTAKVA 242
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 243 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTIREVVYIVKVTNHTIQNRL 302
Query: 186 IEFENTDSGSLTIEDFM 202
EF NT+S +++EDF+
Sbjct: 303 QEFNNTESSRMSVEDFL 319
>gi|356561939|ref|XP_003549234.1| PREDICTED: uncharacterized protein LOC100781816 [Glycine max]
Length = 277
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/137 (60%), Positives = 106/137 (77%), Gaps = 4/137 (2%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
D S+ SDIDD EVD Y+H+EE KH KKI+WE NRE+LEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREHLEEQAAKEAAAAASKKAFEAKF 169
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR--- 459
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQ 229
Query: 460 -LSSKINYDVLEKLFDD 475
L SK+N+++L +LFD+
Sbjct: 230 GLKSKVNFELLNELFDE 246
>gi|302886509|ref|XP_003042144.1| hypothetical protein NECHADRAFT_1589 [Nectria haematococca mpVI
77-13-4]
gi|256723053|gb|EEU36431.1| hypothetical protein NECHADRAFT_1589 [Nectria haematococca mpVI
77-13-4]
Length = 670
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 112/197 (56%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
M+ LN+GES ++ + + +A + NF +GR V A CLY ACR Q +L
Sbjct: 138 MQGYAQQLNVGES--LITAGTQVFKLASSANFVQGRTLASVAAVCLYAACRAQPPCKVML 195
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 196 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQETAKVA 253
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 254 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQSRL 313
Query: 186 IEFENTDSGSLTIEDFM 202
EF+ T+S +++EDF+
Sbjct: 314 QEFKVTESSRMSVEDFL 330
>gi|378734701|gb|EHY61160.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 977
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 21/198 (10%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-------SKP---FLLIDFSNYL 73
V + + +A +F +GR + V CLYLACR+K +P +LIDF+ L
Sbjct: 167 VEAGMQIFKLAWGNSFVQGRTIDSVAVVCLYLACRRKHEQIRNERRPMYSLMLIDFAEKL 226
Query: 74 NINVYELGAVYLQLCQVLYI-------ADESNVLKQVDPSIFLHKFTDRL---LPGGNKK 123
NI+V+ LG +Y L + LY+ AD S L + P + +++F D L +K
Sbjct: 227 NIDVFALGKMYSDLVRRLYLQPDGSVQADVSADLLAMGPEVLVNRFVDELEFDREHRDKI 286
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
D R I+ MKRDW++TGR+PSG+CGAA+ ++A + + + ++V + E T+ K
Sbjct: 287 KMDAIR-IVQRMKRDWMSTGRRPSGVCGAAVILAARMNNYRRTTREVVLTAKVTEITINK 345
Query: 184 RLIEFENTDSGSLTIEDF 201
RL EF++T S L+I+ F
Sbjct: 346 RLAEFQDTASSKLSIKQF 363
>gi|400595952|gb|EJP63740.1| Brf1-like TBP-binding domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 722
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 110/197 (55%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 66
M+ LN+ SD +V + + +A NF +GR V A CLY ACR + +L
Sbjct: 147 MQGYAQQLNV--SDSLVAAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVML 204
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 205 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFRQETAKVA 262
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 263 EDAVRLVKRMSRDWLVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 322
Query: 186 IEFENTDSGSLTIEDFM 202
EF +T+S +++EDF+
Sbjct: 323 QEFNHTESSQMSVEDFL 339
>gi|409041381|gb|EKM50866.1| hypothetical protein PHACADRAFT_31958 [Phanerochaete carnosa
HHB-10118-sp]
Length = 706
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 119/193 (61%), Gaps = 17/193 (8%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLN---- 74
SD + A R Y +A+ FT+GRR+ V A C+Y+ACRQK ++ ++LIDFS+ L
Sbjct: 116 SDVVSLAATRLYTLALEHKFTRGRRSMHVVAVCVYVACRQKETRNYMLIDFSDLLQRMLT 175
Query: 75 ----INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTA 128
++V+ELG YLQL + L + L +DPS + +F LL G++ +V A
Sbjct: 176 SAFKVSVFELGHTYLQLVRTLNLR-----LPPIDPSHHISRFA-ALLEFGDETPRVAVDA 229
Query: 129 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
++A M RDW+ GR+PSG+CGAAL ++A + + S ++IV++V I ++T+ KRL EF
Sbjct: 230 TRLVARMDRDWLARGRRPSGICGAALLLAARMNNFRRSVAEIVQVVKIADSTVRKRLEEF 289
Query: 189 ENTDSGSLTIEDF 201
T S +L++ DF
Sbjct: 290 RKTSSAALSVGDF 302
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 24/117 (20%)
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
++ EEE K+ +W EMNR+YLE AAKA LE PE + + A
Sbjct: 516 FILTEEEVKVKERVWVEMNRDYLEN--------LAAKAELEQMGGETPEKKKRKKRKTA- 566
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSKINYDVLEKLFD 474
+ R A + TA E+ + ++ K R S +INYD L LFD
Sbjct: 567 -----------HTKPRDASTPHGA---TAAESVKNLIKKNPRYSKRINYDALRDLFD 609
>gi|346318705|gb|EGX88307.1| Transcription factor TFIIB, putative [Cordyceps militaris CM01]
Length = 722
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 110/197 (55%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 66
M+ LN+ SD +V + + +A NF +GR V A CLY ACR + +L
Sbjct: 148 MQGYAQQLNV--SDSLVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVML 205
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 206 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFRQETAKVA 263
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 264 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 323
Query: 186 IEFENTDSGSLTIEDFM 202
EF +T+S +++EDF+
Sbjct: 324 SEFNSTESSQMSVEDFL 340
>gi|380484171|emb|CCF40167.1| Brf1-like TBP-binding domain-containing protein [Colletotrichum
higginsianum]
Length = 734
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 6/207 (2%)
Query: 2 EKAFDDMRQMKN--ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 58
EK+ + R + A + SD V+ A + + +A NF +GR V A CLY ACR
Sbjct: 145 EKSIREARSLMQGYAQRLNLSDNTVNTAVQVFKLASQANFVQGRTLVMVAAVCLYTACRT 204
Query: 59 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 117
++ +LID ++ INV++LG + L +V+YI N V P L + +L
Sbjct: 205 ERPCKIMLIDLADLTQINVFKLGRAFKALNRVVYIF--GNGEAPVFPEDILFRLASKLEF 262
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+V + A ++ MK+DWI GR+PSG+CGA L ++A H + + ++V +V +
Sbjct: 263 KHMTNRVAEDAVRLVQRMKQDWIVMGRRPSGICGACLLIAARMHNFRRTTREVVYVVKVT 322
Query: 178 EATLMKRLIEFENTDSGSLTIEDFMAR 204
T+ +RL EF T++ +T+EDF+++
Sbjct: 323 THTIQERLQEFNVTEASKMTVEDFLSQ 349
>gi|310801628|gb|EFQ36521.1| Brf1-like TBP-binding domain-containing protein [Glomerella
graminicola M1.001]
Length = 736
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 6/207 (2%)
Query: 2 EKAFDDMRQMKN--ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR- 58
EK+ + R + A + SD V+ A + + +A NF +GR V A CLY ACR
Sbjct: 143 EKSIREARSLMQGYAQRLNLSDNTVNTAVQVFKLASQANFVQGRTLVMVAAVCLYTACRT 202
Query: 59 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 117
++ +LID ++ INV++LG + L +V+YI N V P L + +L
Sbjct: 203 ERPCKIMLIDLADLTQINVFKLGRAFKALNRVVYIF--GNGEAPVFPEDILFRLASKLEF 260
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+V + A ++ MK+DWI GR+PSG+CGA L ++A H + + ++V +V +
Sbjct: 261 KHMTNRVAEDAVRLVHRMKQDWIVMGRRPSGICGACLLIAARMHNFRRTTREVVYVVKVT 320
Query: 178 EATLMKRLIEFENTDSGSLTIEDFMAR 204
T+ +RL EF T++ +T+EDF+++
Sbjct: 321 THTIQERLQEFNVTEASKMTVEDFLSQ 347
>gi|402585748|gb|EJW79687.1| transcription factor TFIIB repeat family protein, partial
[Wuchereria bancrofti]
Length = 426
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 6/181 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 VNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRT 163
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK-VCDTARDILASMKRDWITT 142
L + L I L DP +++ +F L G +K V A ++ MKRDWI T
Sbjct: 164 LNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGAKQKEVVSLATRLVQRMKRDWIAT 218
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+GLCGAAL ++A + + +D+V++VHI EA + KRL EF T S +LTI++F
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTVADVVRVVHISEAVVKKRLDEFGQTPSSTLTIDEFT 278
Query: 203 A 203
+
Sbjct: 279 S 279
>gi|46116324|ref|XP_384180.1| hypothetical protein FG04004.1 [Gibberella zeae PH-1]
Length = 762
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 66
M+ LN+ SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 150 MQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 207
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 208 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQDTAKVA 265
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 266 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 325
Query: 186 IEFENTDSGSLTIEDFM 202
EF+ T+S +++EDF+
Sbjct: 326 QEFKVTESSRMSVEDFL 342
>gi|408395340|gb|EKJ74522.1| hypothetical protein FPSE_05272 [Fusarium pseudograminearum CS3096]
Length = 759
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 66
M+ LN+ SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 150 MQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 207
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 208 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQDTAKVA 265
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 266 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 325
Query: 186 IEFENTDSGSLTIEDFM 202
EF+ T+S +++EDF+
Sbjct: 326 QEFKVTESSRMSVEDFL 342
>gi|342876335|gb|EGU77962.1| hypothetical protein FOXB_11527 [Fusarium oxysporum Fo5176]
Length = 753
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 66
M+ LN+ SD +V + + +A + NF +GR V A CLY ACR + +L
Sbjct: 150 MQGYAQQLNV--SDSLVTAGTQVFKLASSANFIQGRTLASVAAVCLYAACRAEPPCKVML 207
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 208 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQDTAKVA 265
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 266 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 325
Query: 186 IEFENTDSGSLTIEDFM 202
EF+ T+S +++EDF+
Sbjct: 326 QEFKVTESSRMSVEDFL 342
>gi|430813871|emb|CCJ28823.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 452
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 171/393 (43%), Gaps = 96/393 (24%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN------------ 74
A R++ +AV NF +GRR++ V ASCLY+ CR + +LIDFS+ L
Sbjct: 106 AVRYFTLAVTHNFIQGRRSQYVIASCLYIVCRLERTSHMLIDFSDILQVNLILKNIYLIV 165
Query: 75 --INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDI 131
INV+ LG+ +L+L QVL+I L DPS+++ +F L G KV A +
Sbjct: 166 NKINVFTLGSTFLKLVQVLHIT-----LPFADPSLYITRFAALLEFGAETHKVATDAIRL 220
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191
+ M RDW+ TGR+P+GL ++A + + S ++V +V + + T+ KRL EF+ T
Sbjct: 221 VQRMNRDWMQTGRRPAGLL-----IAARMNNFRRSVEEVVHVVKVGDLTVRKRLEEFKTT 275
Query: 192 DSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEE 251
SG LT++ +
Sbjct: 276 ASGDLTVQ---------------------------------------------------D 284
Query: 252 FMTISEGLEGGADPPAF----QVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPE- 306
F TI LE DPP++ + R+R ++A NS E E D S + + E
Sbjct: 285 FRTI--WLEQTHDPPSYLQGKKKERRQRDIEAMEFLNSK-EHEIDILDASTTNYYHNKEK 341
Query: 307 --PESIGVPKNCTTQTASNEGEGD----------HTKTPGVDATTEASDGSDNFSDIDDF 354
P + + T+ N +G+ + + T + + SDIDD
Sbjct: 342 MLPLKLIETGDFVTELNDNFLKGEMESVLKDRDIQRMSMAIQETKKTGKYCETLSDIDDD 401
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK 387
E++ + +E E K +W E+NREYL Q K
Sbjct: 402 EINQIILSEPEVLAKTRVWMELNREYLAAQEVK 434
>gi|324516790|gb|ADY46635.1| Transcription factor IIIB 90 kDa subunit, partial [Ascaris suum]
Length = 339
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 6/179 (3%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV+ELG
Sbjct: 104 IDTAYNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDVTQVNVFELGRT 163
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 142
L + L I L DP +++ +F L G K+V A ++ MKRDWI T
Sbjct: 164 LNFLARSLKIN-----LPTTDPCLYILRFAVLLEFGEKEKEVVSLATRLVQRMKRDWIAT 218
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
GR+P+GLCGAAL ++A + + DIV++VHI EA + KRL EF T S SLTI++F
Sbjct: 219 GRRPTGLCGAALLLAARCYNFNRTIGDIVRVVHISEAVVRKRLDEFGKTPSSSLTIDEF 277
>gi|322696764|gb|EFY88552.1| hypothetical protein MAC_05446 [Metarhizium acridum CQMa 102]
Length = 742
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 109/197 (55%), Gaps = 6/197 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLL 66
M+ LN+ ES +V + + +A NF +GR V A CLY ACR + +L
Sbjct: 149 MQGYAQQLNVSES--LVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVML 206
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV
Sbjct: 207 IDLADLVQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQETAKVA 264
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 185
+ A ++ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL
Sbjct: 265 EDAVRLVKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRL 324
Query: 186 IEFENTDSGSLTIEDFM 202
EF T+S +++EDF+
Sbjct: 325 QEFNVTESSQMSVEDFL 341
>gi|123472770|ref|XP_001319577.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
gi|121902363|gb|EAY07354.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
Length = 409
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 7/184 (3%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVY 78
S + V +A R Y IAV FT+GR E V A+ +Y+A R +S +LL D + +++ +Y
Sbjct: 92 SQDAVELAHRIYQIAVKHRFTRGRTIEIVSAAAVYVAIRVNRSSGYLLDDVAEHVSCGIY 151
Query: 79 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKR 137
EL A L+L + + L +DP +++ +F + L G N K V DTA I+ + R
Sbjct: 152 ELAATALRLAHAV-----NQPLPTIDPVLYITRFLEELNLGRNLKAVHDTAIHIVHRLDR 206
Query: 138 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 197
DWI TGRKPSG+ G A+ ++ H + SK I +I +C +T+ KRL E T+ +
Sbjct: 207 DWIQTGRKPSGIVGTAIMIACQIHHIPISKERIKEIARVCTSTINKRLKEISETELARES 266
Query: 198 IEDF 201
I+
Sbjct: 267 IDQL 270
>gi|225681951|gb|EEH20235.1| transcription initiation factor IIIB chain BRF [Paracoccidioides
brasiliensis Pb03]
Length = 767
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Query: 42 GRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 100
GRRT+ V A CLY+ACR Q +LIDF++ L INV++LG Y L L + ++
Sbjct: 133 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIM 192
Query: 101 KQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSAL 159
+DP +++F +L G + +V A I+ M RDW+ TGR+P+G+CGAAL ++A
Sbjct: 193 NPIDPESLIYRFAKQLEFGTSMMQVASEAVRIVQRMNRDWMITGRRPAGICGAALILAAR 252
Query: 160 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
+ + + ++V +V + E T+ +RL EF+ T+SG LT++ F
Sbjct: 253 MNNFRRTVREVVYVVKVTELTIHQRLNEFKATESGELTVDQF 294
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D EV L + E K+ IW N++YL Q AK A K AL A
Sbjct: 457 DPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAK-----ALKRAL-------------A 498
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEA--------------KNSGPAQTALEATRRMLTKK 458
+E VA +++++ R + A T EA R+ML K+
Sbjct: 499 EEEELVNGRRVANRPRKRRKGRMGDVGYLGEGNGEGGEGEGGGTRASTPAEAMRKMLEKR 558
Query: 459 RLSSKINYDVLEKLFDD 475
S KINY +LE++++D
Sbjct: 559 GFSKKINYRLLEEMYED 575
>gi|440638775|gb|ELR08694.1| hypothetical protein GMDG_03376 [Geomyces destructans 20631-21]
Length = 693
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 110/188 (58%), Gaps = 6/188 (3%)
Query: 21 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP--FLLIDFSNYLNINVY 78
+ +++ + + +A NF +GRR V A CLY A R K +P +LIDF++ +NV+
Sbjct: 138 ESVLNSGVQIFKLAAMNNFIQGRRMNTVAAVCLYTAAR-KERPCRVMLIDFADSCGVNVF 196
Query: 79 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKR 137
+LG + L Q + I+ ++ + V P +++F +L G + KV ++A ++ M
Sbjct: 197 KLGHTFKALHQKISIS--ADGIMPVLPEDLIYRFATKLEFGQDTTKVAESAVRLVQRMSL 254
Query: 138 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 197
DW+ GR+PSG+CGA L ++A H + + ++V IV + AT+ KRL EF+ T S LT
Sbjct: 255 DWMVMGRRPSGICGACLILAARMHNFRRTVKEVVYIVKVTTATIQKRLEEFKVTASSDLT 314
Query: 198 IEDFMARK 205
+E F++ +
Sbjct: 315 VEQFLSNQ 322
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 28/146 (19%)
Query: 329 HTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKE 388
+ + P V AS F+D D EV L +E E K+ IW N+++L +QA K
Sbjct: 522 YAQAPQVSIPMTASVDESEFAD--DPEVANCLLSEAEAAIKEHIWVNANKDWLRDQAVKL 579
Query: 389 AAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTAL 448
A A +A V + R + Q RAA S PA+ A+
Sbjct: 580 YNQKIADKAPKARRNR------------------VKRPRIGEGQTRAA----SSPAEAAV 617
Query: 449 EATRRMLTKKRLSSKINYDVLEKLFD 474
E +L ++ S +INYD + +F+
Sbjct: 618 E----VLKERTWSKRINYDAIRGIFE 639
>gi|297828227|ref|XP_002881996.1| hypothetical protein ARALYDRAFT_346315 [Arabidopsis lyrata subsp.
lyrata]
gi|297327835|gb|EFH58255.1| hypothetical protein ARALYDRAFT_346315 [Arabidopsis lyrata subsp.
lyrata]
Length = 475
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 148/299 (49%), Gaps = 73/299 (24%)
Query: 171 VKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVL 230
VKIVHICEATL KRLIEF NT++ S T ++ ++E + N P VL
Sbjct: 173 VKIVHICEATLTKRLIEFGNTEAASFTADELSKTERERKKETELRSKRN-PISYKEGVVL 231
Query: 231 CKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERM-VKASAEENSSFER 289
C H+D KP GLC+SCY+EFM +S GLEGG+DPPAFQ AE+ERM KAS EEN
Sbjct: 232 CMHQDC-KPVDYGLCKSCYDEFMKVSGGLEGGSDPPAFQRAEKERMEEKASREEND---- 286
Query: 290 ESDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFS 349
+ +++G D + T S
Sbjct: 287 -----------------------------KQLNSDGHSDESST---------------LS 302
Query: 350 DIDDFE--------VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 401
D+DD E +D Y N EE +I+++ N EY E++AAKEAAA A
Sbjct: 303 DVDDRESDRFTVSQLDCYFRNPEEVRQVEIVFDLTNPEYNEKEAAKEAAALNASNNASNL 362
Query: 402 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 460
+ A+ AA AKSRKEK+Q+RA E KN+ P TA+EA RM+ +K+
Sbjct: 363 F--------------EASKAAAAKSRKEKRQQRAEEEKNAPPPATAMEAVGRMVKRKKF 407
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 430 KQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDS 476
K+Q+RA E KN+ P TA+EA M+ +K+ +IN D LE+L D S
Sbjct: 44 KRQQRAEEEKNAPPPATAIEAVDSMVKRKKF-RRINCDYLEELLDAS 89
>gi|322703408|gb|EFY95017.1| hypothetical protein MAA_09466 [Metarhizium anisopliae ARSEF 23]
Length = 738
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 106/191 (55%), Gaps = 4/191 (2%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNY 72
A + S+ +V + + +A NF +GR V A CLY ACR + +LID ++
Sbjct: 152 AQQLSVSESLVTAGTQVFKLASGANFIQGRTLASVAAVCLYAACRAEPPCKVMLIDLADL 211
Query: 73 LNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDI 131
+ +NV++LG ++ +L +V+ I ++ L V P + +F ++ KV + A +
Sbjct: 212 VQLNVFKLGRIFKKLNEVVPIGNDG--LIPVYPEDLIWRFATKMEFHQETAKVAEDAVRL 269
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191
+ M RDW+ GR+PSG+CGA L ++A H + + ++V IV + T+ RL EF T
Sbjct: 270 VKRMSRDWMVMGRRPSGICGACLLMAARMHNFRRTVREVVYIVKVTNHTIQNRLQEFNIT 329
Query: 192 DSGSLTIEDFM 202
+S +++EDF+
Sbjct: 330 ESSQMSVEDFL 340
>gi|242018719|ref|XP_002429821.1| transcription factor IIIB 70 kDa subunit, putative [Pediculus
humanus corporis]
gi|212514839|gb|EEB17083.1| transcription factor IIIB 70 kDa subunit, putative [Pediculus
humanus corporis]
Length = 485
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 187/407 (45%), Gaps = 87/407 (21%)
Query: 101 KQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 158
++ D S+++ +F +RL GNK +V TA ++ MKRD + TGR+PSGLCGAAL ++A
Sbjct: 9 RKEDVSLYILRFANRL-EFGNKTHQVSMTALRLVQRMKRDSMHTGRRPSGLCGAALLMAA 67
Query: 159 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPN 218
H S SDI+KIV + E+TL KRL+EF T S SL++++FM
Sbjct: 68 RLHEFNRSVSDIIKIVKVHESTLRKRLLEFGETPSSSLSLDEFMT--------------- 112
Query: 219 NGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA-ERE--- 274
V + + F + ++ F I EG E G + A Q E+E
Sbjct: 113 ----------VDLEEEQDPPSFKAARKKDQHDRFQKIIEGDEMGQNLTALQREIEKELNE 162
Query: 275 -------RMVKASAEENSSFERESDSPFMSR-VDK--VQSPEPESIGVPKNCTTQTASNE 324
VK+S+ S E ES++ ++ V K +++ E E I P T N+
Sbjct: 163 LSSKRKANHVKSSSVPISGNEEESENQALNNFVQKFTIEAIE-ECINKPGEEETGNVENQ 221
Query: 325 GEGDHTKTPGVDA------------------TTEASDGSDNFSDIDDFEVDGYLHNEEEK 366
G T G+ + + DG D+DD E++ Y+ + E
Sbjct: 222 GLPPSFTTLGLSSNISTTTTTTTTTPTQEQTSLNVPDGELVADDLDDDELNQYIMTDREA 281
Query: 367 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 426
+K +W ++N +YL+ Q +E A K C K
Sbjct: 282 KFKDSLWMKVNEDYLQRQKEREEKLAKEKE--------C------------------GKP 315
Query: 427 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
K++++ + ++KN+ A +A EA +ML +K++S+KINYDVL+ L
Sbjct: 316 EKKRKKYSSKKSKNAPAANSAGEAFEKMLQEKKMSTKINYDVLKSLM 362
>gi|402083713|gb|EJT78731.1| transcription initiation factor IIB [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 724
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 21 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLNINVYE 79
D ++ A + Y +A +RNFT+GR + V A CLY ACR+++ +L+D ++ + +V+
Sbjct: 161 DRTINSAVQLYKLASSRNFTQGRSMQYVAAMCLYAACRKEATCKIMLMDLADLVQHDVFH 220
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRD 138
LG +Y + + N + D +++F RL G KV +TA ++ M RD
Sbjct: 221 LGRMYKAFIRDIGAGGNYNPIFVED---LIYRFAARLEFGDKTNKVANTAVRLVQRMDRD 277
Query: 139 WITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 198
W+ GR+PSG+CGA L ++A + + + ++V I + TL +RL EF S LT+
Sbjct: 278 WMVMGRRPSGICGACLIMAARMNNFRRTVREVVFIAKVTMHTLQQRLDEFAEVPSAKLTV 337
Query: 199 EDFMAR 204
EDF+ R
Sbjct: 338 EDFLVR 343
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D F+D D EV L ++EE K +W N++++ +Q KE KA L A N
Sbjct: 548 DEFAD--DPEVMYCLLSKEEAELKTQLWVNQNKDWMRKQQEKEF-----KAKLAA---NK 597
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
P+G R ++ R E + S PA +A +AT M+ +++ S +I+
Sbjct: 598 PKG------------------RSRSKKPRIGEGQTS-PADSATDATLEMIDRRQFSKRID 638
Query: 466 YDVLEKLF 473
YD + +
Sbjct: 639 YDAVRSML 646
>gi|384496736|gb|EIE87227.1| hypothetical protein RO3G_11938 [Rhizopus delemar RA 99-880]
Length = 582
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 30/176 (17%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
+R+Y +AV FT+GR++E V A +NV+ LGA +L+
Sbjct: 80 GQRYYNLAVVNRFTRGRKSEHVAA------------------------VNVFTLGATFLK 115
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRK 145
LC+VL + +L VDPS ++ +F L G ++V A I M RDWI TGR+
Sbjct: 116 LCRVLNL-----ILPHVDPSFYISRFAVALDFGDYTQRVAQDAVRIAQRMDRDWIVTGRR 170
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
P+G+CGA L ++A +G + + +++ +V + E T+ KRL EF T+S L+ +DF
Sbjct: 171 PAGICGACLLIAARMNGFRRTLREMIYVVKVAEVTIQKRLNEFNQTESAQLSAQDF 226
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 347 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCP 406
N SD+D E++ + EEE K +W N+EYLEE A + + K
Sbjct: 395 NLSDVDCDEIEAMILTEEEVALKTKLWYNANKEYLEEMAVRRLVEKDKGTGKDKRTKG-- 452
Query: 407 EGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINY 466
SRK+KQQ PA T EA +++L K+LS KIN
Sbjct: 453 -------------------SRKKKQQV---------PASTPAEAAKQLLATKKLSKKINQ 484
Query: 467 DVLEKLFD 474
V + +F+
Sbjct: 485 AVFDDMFE 492
>gi|256084250|ref|XP_002578344.1| transcription initiation factor brf1 [Schistosoma mansoni]
gi|353229135|emb|CCD75306.1| putative transcription initiation factor brf1 [Schistosoma mansoni]
Length = 770
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R+Y A+ R T+GR V A C+YLA RQ +L+D S+ + +NVY LG VY
Sbjct: 96 AFRYYQSALFRGLTRGRSAFTVAAGCIYLAARQLRVNLMLLDLSDAVGVNVYVLGRVYAD 155
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN-KKVCDTARDILASMKRDWITTGRK 145
L + L +A + ++DP I++ +F +L G V TA +L MK+DWI TGR+
Sbjct: 156 LKKRLNLA-----IPEMDPCIYIDRFASQLEFGDKVSTVATTAMRLLQRMKKDWIATGRR 210
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
PSGL AAL V+A H ++ D+ +I I ++T KRL EF T S +L+IE F +
Sbjct: 211 PSGLAAAALLVAARIHEFNRTEEDVARIARISQSTARKRLEEFGRTPSSALSIEAFFS 268
>gi|389642775|ref|XP_003719020.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|351641573|gb|EHA49436.1| transcription initiation factor IIB [Magnaporthe oryzae 70-15]
gi|440475254|gb|ELQ43948.1| transcription initiation factor IIB [Magnaporthe oryzae Y34]
gi|440490906|gb|ELQ70402.1| transcription initiation factor IIB [Magnaporthe oryzae P131]
Length = 701
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 113/209 (54%), Gaps = 11/209 (5%)
Query: 2 EKAFDDMRQM----KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLAC 57
EKA + R + N+LN+ E V+ A + + +A +RNFT+GR + V A CLY AC
Sbjct: 136 EKALREARSLIQGFANSLNLPE--RTVNGASQLFKLASSRNFTQGRSSVYVAAMCLYAAC 193
Query: 58 RQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 116
R+++ +L+D ++ + +V+ LG +Y + N + D +++F RL
Sbjct: 194 RKETSCKIMLMDLADLVQHDVFHLGRMYKAFISDIGAGGNYNPIFVED---LIYRFAARL 250
Query: 117 LPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
G KV TA ++ M RDW+ GR+PSG+CGA L ++A + + + ++V I
Sbjct: 251 EFGDKTNKVASTAVRLVQRMDRDWMVLGRRPSGICGACLIMAARMNNFRRTVREVVFIAK 310
Query: 176 ICEATLMKRLIEFENTDSGSLTIEDFMAR 204
+ TL +RL EF S LT++DF+ R
Sbjct: 311 VTMHTLQQRLNEFAEVPSAKLTVDDFLMR 339
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D F+D D EV L +EE K +W N++++ +Q KE A
Sbjct: 539 DEFAD--DPEVMYCLLGKEEVELKTQLWVNQNKDWMRKQQEKEFKA-------------- 582
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
LAA + + K+ R E + S PA +A +AT M+ +++ S +I+
Sbjct: 583 --------RLAATNPPKPGRGNRAKK-PRIGEGQTS-PADSATDATLEMIDRRQFSKRID 632
Query: 466 YDVLEKLF 473
YD + +
Sbjct: 633 YDAVRSML 640
>gi|154314754|ref|XP_001556701.1| hypothetical protein BC1G_04086 [Botryotinia fuckeliana B05.10]
gi|347832015|emb|CCD47712.1| hypothetical protein [Botryotinia fuckeliana]
Length = 726
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 118/198 (59%), Gaps = 8/198 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP--FL 65
M+ + N L I SD+++ V + + +A NF +GRRT+ V A CLY ACR K +P +
Sbjct: 127 MQALANQLGI--SDQVIGVGHQIFKLASMNNFIQGRRTDLVAAVCLYSACR-KEQPCRVM 183
Query: 66 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKV 124
LIDF++ +NV+ LG + L + + +A ++ + V P + KF +L +KV
Sbjct: 184 LIDFADKSQVNVFTLGKYFKALHKQISLA--TDGILPVLPEDLIWKFASKLEFYEQTEKV 241
Query: 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
D A ++ M DW+ GR+PSG+CGA L ++A + + + +++V +V + AT+ KR
Sbjct: 242 ADDAIRMVRRMSLDWMVMGRRPSGVCGACLILAARMNNFRRTVTEVVYVVKVTTATIQKR 301
Query: 185 LIEFENTDSGSLTIEDFM 202
L EF+ T S +LT+E+F+
Sbjct: 302 LEEFKRTPSSALTVEEFL 319
>gi|281212344|gb|EFA86504.1| TATA box-binding protein-associated factor [Polysphondylium
pallidum PN500]
Length = 582
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 96/180 (53%), Gaps = 45/180 (25%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ +A R Y +A+ NFTKGRRT+ V A+CLY+ CR++S P + F+N L
Sbjct: 96 IDMALRMYQLAIEHNFTKGRRTQNVAATCLYIVCRRESTPRI---FANSL---------- 142
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+F ++ ++V TA ++A MKRDW+ TG
Sbjct: 143 ---------------------------EFEEK-----TQEVAATALKLVARMKRDWMATG 170
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
R+PSG+CGA+L+++A HG + +I++IV I E TL KRL EF+ T + + I +F A
Sbjct: 171 RRPSGICGASLFIAAKMHGFTRTVREIIQIVKIGETTLTKRLDEFKQTPASMMRISEFEA 230
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 347 NFSDIDDFEVDGYLHNEEEKHY-KKIIWEEMNREYLEEQAAK 387
D+ D E+D Y+ +++E Y K +IW EMN+E++ +QA +
Sbjct: 420 TLDDLSDEELDTYIEDDKETIYAKDVIWSEMNKEWIVKQAQR 461
>gi|320589780|gb|EFX02236.1| transcription factor tfiiib complex subunit [Grosmannia clavigera
kw1407]
Length = 829
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 108/195 (55%), Gaps = 9/195 (4%)
Query: 15 LNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP----FLLIDFS 70
LNI E V V ++Y +A + NF +GR+ + V A CLY ACR+ ++ +LID +
Sbjct: 169 LNIPE--HTVTVGFQYYKLASSANFVQGRKIQNVVAVCLYAACRKSTQANPCKIMLIDLA 226
Query: 71 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTAR 129
+ + V+ LG + +L Q + +A V+ IF +F +L KV +TA
Sbjct: 227 DLVKEEVFFLGRTFKKLLQTIDVAARDVQPIYVEDLIF--RFAAKLEFDTMTNKVAETAV 284
Query: 130 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189
++ M RDW+ GR+P+G+CGA L ++A + + + ++V I + ATL RL EF+
Sbjct: 285 RLVQRMDRDWMVMGRRPAGICGACLIMAARMYNFRRTVREVVYIAKVTMATLQMRLDEFK 344
Query: 190 NTDSGSLTIEDFMAR 204
S +T+E+F+A+
Sbjct: 345 ELPSAKMTVEEFLAQ 359
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 411
DD EV L +E E K+ IW NR YL + +E A
Sbjct: 659 DDPEVQFCLLSEAEAAAKEKIWMNENRAYLRMRQEREFRAK------------------- 699
Query: 412 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 471
AAA ++R+ ++ + E + S PA T EA + ++ S +INYD + +
Sbjct: 700 ----MAAANGTKKQTRRRLKKPKIGEGQTS-PATTPGEAAVEAMERRGFSKRINYDAMRR 754
Query: 472 LFD 474
+ D
Sbjct: 755 MLD 757
>gi|291236300|ref|XP_002738078.1| PREDICTED: BRF (transcription factor) homolog family member
(brf-1)-like [Saccoglossus kowalevskii]
Length = 534
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 189/425 (44%), Gaps = 82/425 (19%)
Query: 105 PSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 163
P +++ +F +L G V TA +++ MKRDW+ TGR+PSGLCGAAL VSA H
Sbjct: 11 PCLYIPRFAHKLEFGDKTHDVSMTALRLVSRMKRDWMHTGRRPSGLCGAALLVSARLHDF 70
Query: 164 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM---------------ARK--K 206
++ +I+++V +C+ATL KRL EFE T S LTI++F AR+ K
Sbjct: 71 NRTQKEIIRVVKVCDATLRKRLTEFEETPSSRLTIDEFQKIDLEEEQDPPAFTNARRKAK 130
Query: 207 ELHEGVAANLPNNGPKVSGMNEVLCK--HKDTGK-PFACGLCRSCYEEFMTISEGLEGGA 263
+ G A LP ++S + E + K HK K P C S ++ + E +
Sbjct: 131 KAQFGEACKLPELEGEISCVQEEIEKALHKKHSKNPNLCEGSLSQSDDSQDVQETSQFVE 190
Query: 264 DPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDK---VQSPEPESIGVPKNCTTQT 320
+ QV E +++ + EE ++S M K V + +G+ +CT +
Sbjct: 191 EEILQQVEEETEILQDAKEEAV-----AESAVMQEPVKDCHVDDDVDDDVGIDNHCTNRN 245
Query: 321 -----------ASNEGEGDHTKTPGV----------------DATTEASDGSDNFSDIDD 353
AS EG + V + + DG + + IDD
Sbjct: 246 NEELDTLLLSEASWEGAYSGPRPSAVSLGLTQTIEECMQVPEEESVPEDDGELDLTGIDD 305
Query: 354 FEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQ 413
E++ ++ ++ E K IW + N EYL++Q KE +
Sbjct: 306 SELEKFILSDNEVELKTEIWMKENAEYLKQQKEKEEKEQRDR------------------ 347
Query: 414 ELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
+ S+ E ++KR + + A TA EA +ML +K++SSKINYDVL L
Sbjct: 348 --------ELGISKPESKKKRKYKKRVPFQANTAGEAIEKMLQEKKISSKINYDVLRDLN 399
Query: 474 DDSVC 478
+S C
Sbjct: 400 RESDC 404
>gi|451847520|gb|EMD60827.1| hypothetical protein COCSADRAFT_39548 [Cochliobolus sativus ND90Pr]
Length = 732
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 110/202 (54%), Gaps = 14/202 (6%)
Query: 12 KNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFL 65
KNA+ ++ + + ++ A +Y +A+ F +GRR V A +Y+A R Q +
Sbjct: 130 KNAIQALGASLNQREAVIEQAFSWYKLAMNHRFIQGRRMRNVAAVSIYMAARRQPENTLM 189
Query: 66 LIDFSNYLNINVYELGAVYLQLCQVLYIADE-----SNVLKQVDPSIFLHKFTDRLLPGG 120
LID + + NV+ LG Y Q ++L D S +++++P + K+ +L G
Sbjct: 190 LIDLAEKIQTNVWALGDTYKQFLEMLKEEDPAQLAGSKAVQEIEP--LMLKYCRKLEFGD 247
Query: 121 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++
Sbjct: 248 DSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREVVYVVKVADS 307
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ RL E++ T S +LT+ F
Sbjct: 308 TITSRLYEYKRTQSAALTVNQF 329
>gi|451996589|gb|EMD89055.1| hypothetical protein COCHEDRAFT_1180203 [Cochliobolus
heterostrophus C5]
Length = 648
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 110/202 (54%), Gaps = 14/202 (6%)
Query: 12 KNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFL 65
KNA+ ++ + + ++ A +Y +A+ F +GRR V A +Y+A R Q +
Sbjct: 130 KNAIQALGASLNQREAVIEQAFSWYKLAMNHRFIQGRRMRNVAAVAIYMAARRQPENTLM 189
Query: 66 LIDFSNYLNINVYELGAVYLQLCQVLYIADE-----SNVLKQVDPSIFLHKFTDRLLPGG 120
LID + + NV+ LG Y Q ++L D S +++++P + K+ +L G
Sbjct: 190 LIDLAEKIQTNVWALGDTYKQFLEMLKEEDPAQLVGSKAVQEIEP--LMLKYCRKLEFGD 247
Query: 121 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++
Sbjct: 248 DSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREVVYVVKVADS 307
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ RL E++ T S +LT+ F
Sbjct: 308 TITSRLYEYKRTQSAALTVNQF 329
>gi|321468451|gb|EFX79436.1| hypothetical protein DAPPUDRAFT_304854 [Daphnia pulex]
Length = 638
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 123/203 (60%), Gaps = 8/203 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M++A + + M LN+ + + +A FY +A+ R+ T GR++ A+C+Y+ CR +
Sbjct: 85 MKRAREKITTMGQQLNLNQ--HCIDMAVNFYAMALTRHLTNGRKSSHTVAACIYITCRME 142
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
LLID ++ ++I+VY LG ++Q+ + ++ + VDP +++ ++ +R+ G
Sbjct: 143 GTAHLLIDIADVIDIDVYTLGHNFMQIAKTFNLS-----IPSVDPCLYVMRYANRMNFGD 197
Query: 121 -NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V TA ++ MKRDWI TGR+PSGLCGAAL ++A HG + D+++ V + E
Sbjct: 198 KTHEVSRTALRLVQRMKRDWIHTGRRPSGLCGAALLLAARFHGFNRTVVDVIREVKVHEN 257
Query: 180 TLMKRLIEFENTDSGSLTIEDFM 202
T+ KR+ EF T S L+IE+FM
Sbjct: 258 TVRKRMQEFGETASSDLSIEEFM 280
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 344 GSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 403
G + IDD E+D Y+ E E +W +N E+++E LEA
Sbjct: 420 GELDLEGIDDSEMDSYIRTEYEVKMTSDMWMAINGEFMKE--------------LEAK-- 463
Query: 404 NCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSK 463
Q + + RK K +R + SG T EA +ML KR+S+K
Sbjct: 464 ------QKRKAEEEEEKQKRGEKRKRKTGRRQPQQSYSG--STPGEAIGKMLVGKRISNK 515
Query: 464 INYDVLEKL 472
INYD L+ L
Sbjct: 516 INYDKLKDL 524
>gi|348546031|ref|XP_003460482.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like, partial
[Oreochromis niloticus]
Length = 605
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 181/420 (43%), Gaps = 92/420 (21%)
Query: 104 DPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 162
DP +++ +F L G +V TA ++ MKRDW+ TGR+PSGLCGAAL ++A H
Sbjct: 8 DPCLYIPRFAHMLEFGAKTHEVSMTALRLVQRMKRDWMHTGRRPSGLCGAALLIAARMHM 67
Query: 163 LKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFM------------------- 202
+ S D++ +V I +A L KRL EFE+ + LTI++FM
Sbjct: 68 FQRSVKDVIGVVKIIYQAILRKRLTEFEDMPTSQLTIDEFMKVDLEQECDPPSFTAAQQE 127
Query: 203 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEG--LE 260
A+ ++L + +A L ++S + + + +P G+ + +E G L
Sbjct: 128 AKMQQLEQELAKKLDEVEGEISCYKDEIETELEKSRPKLRGIYTTYTKEVDPEDNGDVLS 187
Query: 261 GGADP-------PAFQVA-------------ERERMVKASAEENSSFERESDSP-----F 295
+ P FQVA + E + ++ + E+ES P +
Sbjct: 188 LPSKPEEVEGEGVEFQVATHHLTEDFLCQVIQEEEGRGVNGDQEAVPEKESMGPHRQAAY 247
Query: 296 MSRVDKVQSPEPESIGVPKNCTTQTASNEGE---GDHTKTPGVDATTEASDGSDNFSDID 352
++ + + P S+ + + T S G GD+ ++ +D DID
Sbjct: 248 LTSIPG-KLPSAASLSLQQTFQTSDTSESGGRVLGDYPQSEELD-----------LKDID 295
Query: 353 DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAA 412
D ++D Y+ NE+E K +W + N EYL+EQ K+ K E +YK + +
Sbjct: 296 DQKIDKYILNEKEVQVKMELWIKQNPEYLKEQEEKQEQINKEKE--EGTYKEKKKKSKKR 353
Query: 413 QELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
++ TA EA +RML KK +SSKINYDVL L
Sbjct: 354 DQIETL---------------------------TAGEAIKRMLEKKIISSKINYDVLRDL 386
>gi|145544220|ref|XP_001457795.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425613|emb|CAK90398.1| unnamed protein product [Paramecium tetraurelia]
Length = 439
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 153/379 (40%), Gaps = 80/379 (21%)
Query: 19 ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN-V 77
E E +A+R + N R + + LY R K+ P+LLI+ S ++ +
Sbjct: 50 EYKEAFEIARRLLKFYKSENAI--RNGQYFAGAALYFGFRCKNAPYLLIEISEFIKKDSA 107
Query: 78 YELGAVYLQLCQVL-------YIADESNVLKQVDPSIFLHKFTDRLLPGGNKK---VCDT 127
++ YL+L + + I + L+ +DPSI++ KF RLL K + DT
Sbjct: 108 TKVAKCYLKLLKFVKADAKAPQIVQLAKSLQYLDPSIYIPKFV-RLLEISRDKYKAIVDT 166
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A ++ M DW+ GR+PS LCGAAL +SA HG S + K V +C+ T+ KRL E
Sbjct: 167 AMKLIKRMMLDWMAYGRRPSSLCGAALLISARFHGENVPTSQVCKTVQVCDETIRKRLAE 226
Query: 188 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRS 247
F T LT E F
Sbjct: 227 FNQTGLSQLTREQF---------------------------------------------- 240
Query: 248 CYEEFMTISEGLEGGA-DPPAFQ--VAERERMVKASAEENSSFERESDSPFMSRVDKVQS 304
E+ I G+ G DPP+++ + E M K EE ES + ++
Sbjct: 241 --EQIENIETGIPGPVNDPPSYRRIKQQEEEMRKGLTEEQIKQLEESTLKKALEMIELLK 298
Query: 305 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGS--DNFSDIDDFEVDGYLHN 362
+PE N + P + E D + S+ID+ E Y+ N
Sbjct: 299 VQPEVFKQEDNLKQEYP----------IPVKEPIKEQKDNEILSSLSEIDEQE---YILN 345
Query: 363 EEEKHYKKIIWEEMNREYL 381
E+EK K+I+W +N+EY+
Sbjct: 346 EQEKANKQIVWSALNKEYI 364
>gi|356565588|ref|XP_003551021.1| PREDICTED: uncharacterized protein LOC100810175 [Glycine max]
Length = 498
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 100/139 (71%), Gaps = 6/139 (4%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
D S+ SDIDD EVD Y+H+EE KH KKI+WE NREYLEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAASKKAFEAKF 169
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR--- 459
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A E +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAETFGQMSNKKREQA 229
Query: 460 ---LSSKINYDVLEKLFDD 475
+++ IN E F++
Sbjct: 230 AKEVAAAINKKAFEAKFEN 248
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 383 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRK 428
EQAAKE AAA K A EA ++NC E + AA+EL A++ AVAKSRK
Sbjct: 227 EQAAKEVAAAINKKAFEAKFENCSEDILAARELGASSTEAVAKSRK 272
>gi|345311738|ref|XP_003429146.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit-like [Ornithorhynchus anatinus]
Length = 618
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 42 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 99
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 127
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N
Sbjct: 100 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHMLEFGDNNPEIPN 154
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
I P AL V+A H + + +++++V +CE+TL KRL E
Sbjct: 155 PAAIATV-----------PPAQLELALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTE 203
Query: 188 FENTDSGSLTIEDFM 202
FE+T + LTI++FM
Sbjct: 204 FEDTPTSQLTIDEFM 218
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 27/137 (19%)
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
D + DG + S IDD E+D Y+ N+ E K +W + N EYL+EQ KEA A K
Sbjct: 379 DPNENSGDGELDLSGIDDSEIDRYILNDNEARIKAELWMKENAEYLKEQKEKEARIAKEK 438
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
EL KE + K++++ + A TA EA +ML
Sbjct: 439 ------------------ELGIY---------KEHKPKKSSKKREPIQASTAGEAIEKML 471
Query: 456 TKKRLSSKINYDVLEKL 472
+K++SSKINY+VL+ L
Sbjct: 472 EQKKISSKINYNVLKDL 488
>gi|356495023|ref|XP_003516380.1| PREDICTED: uncharacterized protein LOC100810140 [Glycine max]
Length = 297
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/117 (64%), Positives = 91/117 (77%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
D S+ SDIDD EVD Y+H+EE KH KKI+WE REYLEEQAAKEAAAAA+K A EA +
Sbjct: 110 DESETLSDIDDEEVDLYIHDEEGKHIKKILWETTYREYLEEQAAKEAAAAASKKAFEAKF 169
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKR 459
+NC E + AA+ELAA++ AVAKS+KE +QKRA EAKN+ PAQ+A EA +M KKR
Sbjct: 170 ENCSEDILAARELAASSTEAVAKSKKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKR 226
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%)
Query: 383 EQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRK 428
EQAAKEA A A K A EA + NC E + AA+ELAA++ AV KSRK
Sbjct: 227 EQAAKEATATANKKAFEAKFGNCSEDILAARELAASSTEAVEKSRK 272
>gi|440798133|gb|ELR19201.1| Molybdenum cofactor sulfurase, putative [Acanthamoeba castellanii
str. Neff]
Length = 579
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 82/129 (63%), Gaps = 6/129 (4%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R + +A+ NF +GR++E V +SCLY+ CR++ +LIDF++ LN+ +Y LG +L
Sbjct: 37 AFRLFLLALQHNFVRGRKSEYVISSCLYVVCRREKTAHMLIDFADVLNVPLYYLGHTFLD 96
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRK 145
C +L + L +DPS+++ +F +L G V +TA ++ M+RDWI TGR+
Sbjct: 97 FCSLLNLQ-----LPVIDPSLYIERFAAKLGFGDKTHAVANTALRLVQRMRRDWIITGRR 151
Query: 146 PSGLCGAAL 154
P+G+CGA L
Sbjct: 152 PAGICGADL 160
>gi|162606550|ref|XP_001713305.1| TFIIB related factor hBRF [Guillardia theta]
gi|12580771|emb|CAC27089.1| TFIIB related factor hBRF [Guillardia theta]
Length = 394
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 6/162 (3%)
Query: 38 NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES 97
NF ++ + SCLY+ R + P LL+DFS+ I ++G +L++ + L +
Sbjct: 105 NFVINKKVDLYIISCLYMISRFEKTPHLLVDFSDISQIRTNKIGVEFLKISKNLKME--- 161
Query: 98 NVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 156
+ +DP IF+H+F RLL G K+ +A I+A MKR+W++TGR+PS LCG AL +
Sbjct: 162 --IPIIDPCIFIHRFASRLLLGKKSGKIITSALRIIARMKRNWLSTGRRPSSLCGVALLI 219
Query: 157 SALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI 198
++ +G +I KIV + +L R+ E +NT +T+
Sbjct: 220 ASRMYGFSIDTKEISKIVRVGHLSLKSRINEIKNTTLAQMTL 261
>gi|302774819|ref|XP_002970826.1| hypothetical protein SELMODRAFT_94206 [Selaginella moellendorffii]
gi|300161537|gb|EFJ28152.1| hypothetical protein SELMODRAFT_94206 [Selaginella moellendorffii]
Length = 74
Score = 110 bits (275), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA I+ASMKRDWI TGRKPSG+CGAAL+VSA HG + SKSD+V +VH+C TL KRL+
Sbjct: 1 TALRIVASMKRDWIQTGRKPSGVCGAALFVSAQIHGFECSKSDVVSVVHVCGDTLTKRLV 60
Query: 187 EFENTDSGSLTI 198
EF NT+SGSLT+
Sbjct: 61 EFGNTESGSLTV 72
>gi|340960531|gb|EGS21712.1| transcription factor iiib-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 842
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 99/181 (54%), Gaps = 4/181 (2%)
Query: 23 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELG 81
+ A + Y +A NF +GRR V A CLY CR +++ +LIDF++ + +V+ LG
Sbjct: 160 VTEKAFQLYKVAANSNFIQGRRKNTVAAICLYATCRKEENNKVMLIDFADIIKTDVFLLG 219
Query: 82 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWI 140
Y +L +L E + ++ IF +F +L KV +A I M+ D I
Sbjct: 220 RSYKELLALLPDVKEGSKPVIIEDLIF--RFASKLEFLHDTNKVAMSAIRIAQRMRHDNI 277
Query: 141 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 200
T GR+P+G+CGAAL ++A H + + ++V I + ATL +R+ EF N S +T+++
Sbjct: 278 THGRRPAGICGAALIMAARAHNYRRTVREVVYIAKVTMATLQERMEEFANVPSAQMTVQE 337
Query: 201 F 201
F
Sbjct: 338 F 338
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
D F+D D EV +E++ K++IW N++Y+ + K A A+ N
Sbjct: 627 DEFAD--DPEVIYCKLDEKDVMIKEMIWANHNKDYMRKMQQKIFEAKMAQ--------NG 676
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
P K ++ + +K + PA +ALEA + ML + +SSK++
Sbjct: 677 P-----------------PKPKRNRAKKPRIGEGQTAPAGSALEAAQNMLRTRAISSKLD 719
Query: 466 YDVLEKLFDDSVCLYSIS 483
Y + LFD L S S
Sbjct: 720 YSRMGNLFDPKGSLGSKS 737
>gi|85082526|ref|XP_956934.1| hypothetical protein NCU04523 [Neurospora crassa OR74A]
gi|28918015|gb|EAA27698.1| predicted protein [Neurospora crassa OR74A]
Length = 878
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 12/199 (6%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
M+Q L IG+S I +A R+Y NF +GRR + V A CLY ACR + + +L
Sbjct: 144 MQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNVAAICLYAACRAENNHKIML 201
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRL-LPGGNK 122
ID ++ L+ +V+ LG Y L P + +++F +L
Sbjct: 202 IDLADLLHTDVFALGRGYKDFLNRF-----PEFLTGPRPIVIEDLIYRFASKLEFLHDTN 256
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V IV + AT+
Sbjct: 257 KVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIVKVTMATIQ 316
Query: 183 KRLIEFENTDSGSLTIEDF 201
+R+ EF + + +T++DF
Sbjct: 317 ERMDEFASVPAAQMTVQDF 335
>gi|336471108|gb|EGO59269.1| hypothetical protein NEUTE1DRAFT_145317 [Neurospora tetrasperma
FGSC 2508]
gi|350292195|gb|EGZ73390.1| hypothetical protein NEUTE2DRAFT_149471 [Neurospora tetrasperma
FGSC 2509]
Length = 878
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 12/199 (6%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLL 66
M+Q L IG+S I +A R+Y NF +GRR + V A CLY ACR + + +L
Sbjct: 144 MQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNVAAICLYAACRAENNHKIML 201
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRL-LPGGNK 122
ID ++ L+ +V+ LG Y L P + +++F +L
Sbjct: 202 IDLADLLHTDVFALGRGYKDFLNRF-----PEFLTGPRPIVIEDLIYRFASKLEFLHDTN 256
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V IV + AT+
Sbjct: 257 KVALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIVKVTMATIQ 316
Query: 183 KRLIEFENTDSGSLTIEDF 201
+R+ EF + + +T++DF
Sbjct: 317 ERMDEFASVPAAQMTVQDF 335
>gi|393215043|gb|EJD00535.1| hypothetical protein FOMMEDRAFT_159269 [Fomitiporia mediterranea
MF3/22]
Length = 266
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 9/131 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLNINVYELGAVYL 85
A R Y +A+ FTKGR V A CLY+ACRQK ++ ++LIDFS+ L +NV+ELG +L
Sbjct: 142 AIRMYTLALEHKFTKGRTNMDVIAVCLYIACRQKETRNYMLIDFSDLLQVNVFELGHTFL 201
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK--KVCDTARDILASMKRDWITTG 143
QL Q L + L VDPS ++ +F LL G++ KV A ++A RDW++ G
Sbjct: 202 QLVQTLNLR-----LPLVDPSHYISRFAA-LLESGDETLKVAADAARLVARFDRDWMSRG 255
Query: 144 RKPSGLCGAAL 154
R+P G+CG++L
Sbjct: 256 RRPVGICGSSL 266
>gi|189204338|ref|XP_001938504.1| transcription factor tfiiib complex subunit brf1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985603|gb|EDU51091.1| transcription factor tfiiib complex subunit brf1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 720
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 111/202 (54%), Gaps = 14/202 (6%)
Query: 12 KNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFL 65
KNA+ ++ + + ++ A +Y +++ NF +GRR V A +Y+A R Q +
Sbjct: 126 KNAIEALGASLNQREAVIEQAVSWYKLSMNFNFVQGRRMRNVAAISIYMAARRQPENTLM 185
Query: 66 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLHKFTDRLLPGG 120
LID + + NV+ LG Y + + D + ++ ++++P + K+ +L G
Sbjct: 186 LIDLAEKIQTNVWVLGDTYKSFLKTMKEKDPAQLIGNKAVQEIEP--LMLKYCRKLEFGD 243
Query: 121 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++
Sbjct: 244 DSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREVVYVVKVADS 303
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ RL E++ T S +LT++ F
Sbjct: 304 TITSRLYEYKRTQSAALTVKQF 325
>gi|47213352|emb|CAF92975.1| unnamed protein product [Tetraodon nigroviridis]
Length = 446
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 117/437 (26%), Positives = 175/437 (40%), Gaps = 125/437 (28%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA ++ MKRDW+ TGR+PSGLCGAAL V+A H + + D++ +V +C+ TL KRL
Sbjct: 2 TALRLVQRMKRDWMHTGRRPSGLCGAALLVAARMHKFRRTVKDVISVVKVCQTTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFM-----------------------------ARKKELHEG------ 211
EFE+T + LTI++FM RK + EG
Sbjct: 62 EFEDTPTSQLTIDEFMRVDLEQECDPPSFTAGQHKTKMQQLEQELTRKLDDVEGEISCYK 121
Query: 212 --VAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQ 269
+ L + PK+ G+ ++TG P C + E + ++ L DP +
Sbjct: 122 NEIETELEKSRPKLRGIYAACT--QETG-PILCHQVQYPQTEELLLTPSLVTLPDPANAE 178
Query: 270 V-------AERERMVKASA------------EENSSFERES------DSPFMSRVDKVQS 304
V AE E V+A+A +E + R++ D P RV+ +
Sbjct: 179 VLSVNPDPAEPEDEVQAAAQRLTQDFLCHVIQEEEGWARKAEDGEPRDHPVKDRVECLHK 238
Query: 305 PEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVD------- 357
P +G A + + H ++ + G + IDD E++
Sbjct: 239 APP--LGAILGNLPSAAGLDLQ-QHLESAAEPEAEQVEGGELDLDGIDDQEIEKVPGLWS 295
Query: 358 --------GYLH--------------NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
G LH N++E K +W + N EYL+EQ KEA K
Sbjct: 296 SPLTCLCGGRLHHLLDSERLLLQYILNDKEVEVKTELWMKQNAEYLKEQKEKEARIQKEK 355
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
+ +Y A K R++K+ A TA EA ML
Sbjct: 356 E--QGTY--------------KEKAKKPKKKREQKE------------ASTAGEAIEMML 387
Query: 456 TKKRLSSKINYDVLEKL 472
+K++SSKINYDVL L
Sbjct: 388 ERKKISSKINYDVLRHL 404
>gi|330927787|ref|XP_003301998.1| hypothetical protein PTT_13669 [Pyrenophora teres f. teres 0-1]
gi|311322865|gb|EFQ89897.1| hypothetical protein PTT_13669 [Pyrenophora teres f. teres 0-1]
Length = 729
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 110/202 (54%), Gaps = 14/202 (6%)
Query: 12 KNAL-----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFL 65
KNA+ ++ + + ++ A +Y +++ NF +GRR V A +Y+A R Q +
Sbjct: 129 KNAIQALGASLNQREAVIEQAFSWYKLSMNFNFIQGRRMRNVAAISIYMAARRQPENTLM 188
Query: 66 LIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLHKFTDRLLPGG 120
LID + + NV+ LG Y + + D + ++ ++++P + K+ +L G
Sbjct: 189 LIDLAEKIQTNVWVLGDTYKSFLKTMKERDPAQLVGNKAVQEIEP--LMLKYCRKLEFGD 246
Query: 121 NK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ +V D A +L M RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++
Sbjct: 247 DSHRVADDACKVLKRMNRDWMVQGRQPAGLCGACIIIAARMNNFRRTIREVVYVVKVADS 306
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ RL E++ T S +LT+ F
Sbjct: 307 TITSRLYEYKRTQSAALTVNQF 328
>gi|346973176|gb|EGY16628.1| transcription factor tfiiib complex subunit brf1 [Verticillium
dahliae VdLs.17]
Length = 735
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 112/209 (53%), Gaps = 18/209 (8%)
Query: 23 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR---------QKSKPFLLIDFSNYL 73
IV A + +A+ + FT+GR + V A+C+Y A R ++++ +++D ++
Sbjct: 156 IVDKAVATFKLAMGQGFTQGRTLQMVCAACIYYAFRSQERVEGNERETQFVMMLDLADLT 215
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDIL 132
+NV+ LG + L + I ++ + P +H+ +L G KV + A ++
Sbjct: 216 RLNVFRLGRCFKALVNKVPIG---SLACTIFPEDIIHRLATKLDFGPQTDKVAEDAVRLI 272
Query: 133 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 192
SM+RDWI GR+PSG+CGA L ++A + + + ++V IV + T+ +R+ EF T
Sbjct: 273 TSMRRDWIIMGRRPSGICGACLLMAARMNNFRRTMREVVYIVKVTSHTIQERMKEFNETA 332
Query: 193 SGSLTIEDFMARKKELHEGVAANLPNNGP 221
+ LTI+DF+ + E +A P++ P
Sbjct: 333 ASQLTIDDFLTKDWE-----SAGPPSHDP 356
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 411
DD EV L + EE K+I+W N+++L + +E LEA P
Sbjct: 553 DDVEVMNALLSPEEVKLKEIVWVNENQDWLRKNQQREF-----DRKLEAGKPKRP----- 602
Query: 412 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 471
+++ + R EA+ S PA T +EA + ++ +S ++NYD +
Sbjct: 603 ----------------RKRNKPRLGEAQTS-PASTPIEAAQNVMKHHGMSKRLNYDAISS 645
Query: 472 LFD 474
L +
Sbjct: 646 LLN 648
>gi|367033853|ref|XP_003666209.1| hypothetical protein MYCTH_2310743 [Myceliophthora thermophila ATCC
42464]
gi|347013481|gb|AEO60964.1| hypothetical protein MYCTH_2310743 [Myceliophthora thermophila ATCC
42464]
Length = 852
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 2 EKAFDDMRQMKN--ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 59
E++ + RQ+ N A + + + A + Y A NF +GRR V A C+Y CR+
Sbjct: 137 ERSLREARQLMNQFAHQLQIAPHVAEKAFQVYKFASNSNFIQGRRKNTVAAVCIYAVCRK 196
Query: 60 K-SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-L 117
+ + +LID ++ + +V+ LG Y L L D + K + + +F +L
Sbjct: 197 EDNNKVMLIDLADIIKTDVFLLGRSYKDLLNAL--PDMKDGTKPIIIEDLIFRFASKLEF 254
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V I +
Sbjct: 255 LHDTNKVALSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIAKVT 314
Query: 178 EATLMKRLIEFENTDSGSLTIEDF 201
ATL +R+ EF N S +T+ DF
Sbjct: 315 MATLQERMEEFANVPSAQMTVRDF 338
>gi|145536716|ref|XP_001454080.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421824|emb|CAK86683.1| unnamed protein product [Paramecium tetraurelia]
Length = 438
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 21/214 (9%)
Query: 19 ESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NV 77
E E +A+R + N K + + LY R K+ P+LLI+ S + +
Sbjct: 50 EYKEAFEIARRLLKFYKSENSIKN--GQYFAGAALYFGFRCKNAPYLLIEISELIKKESA 107
Query: 78 YELGAVYLQL-------CQVLYIADESNVLKQVDPSIFLHKFTDRLLP---GGNKKVCDT 127
++ YL+L +V I + L+ +DPSI++ KF RLL +K++ +T
Sbjct: 108 TKVAKCYLKLLKFVKLDAKVPQIVQLAKSLQYIDPSIYIPKFV-RLLEISRDKHKQIVET 166
Query: 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
A ++ M DW+ GR+PS LCGAAL +SA HG S S + K V +C+ T+ KRL E
Sbjct: 167 AMKLIKRMMLDWMAYGRRPSSLCGAALLISARFHGENVSTSQVCKTVQVCDETIRKRLAE 226
Query: 188 FENTDSGSLTIEDFMARKKELHEGVAANLPNNGP 221
F T LT E F E E + +P GP
Sbjct: 227 FNQTGLSQLTREQF-----EQIENIETGIP--GP 253
>gi|261200727|ref|XP_002626764.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis SLH14081]
gi|239593836|gb|EEQ76417.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis SLH14081]
Length = 777
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 43/193 (22%)
Query: 10 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLID 68
Q+ ALN+ ES A + + +AV NF +GRRT+ V A CLY+ACR Q +LID
Sbjct: 140 QLSRALNVPES--ATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLYIACRRQDGNTVMLID 197
Query: 69 FSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTA 128
F++ L + E G+ +Q V A
Sbjct: 198 FADVL---MLEFGSSMMQ-------------------------------------VASEA 217
Query: 129 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
I+ M RDW+ TGR+P+G+CGAAL ++A + + + ++V +V + E T+ +RL EF
Sbjct: 218 VRIVQRMNRDWMITGRRPAGICGAALILAARMNNFRRTVREVVYVVKVTELTIHQRLNEF 277
Query: 189 ENTDSGSLTIEDF 201
+ T+SG LT++ F
Sbjct: 278 KATESGDLTVDQF 290
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 350 DID------DFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYK 403
DID D EV L + E K+ IW N++YL Q AK A A+ E
Sbjct: 446 DIDASEFDSDPEVKYCLLSPAEVEIKERIWVHENKDYLRTQQAKALKRALAE---EEDLI 502
Query: 404 N--CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 461
N P + ++ V + + + + + A T EATRRML K+ S
Sbjct: 503 NGRVPGITRRPRKRRKGRMGDVGYLEGKGENGEDVDGRGTR-ASTPAEATRRMLEKRGFS 561
Query: 462 SKINYDVLEKLFDD 475
KINY +LE++++D
Sbjct: 562 KKINYRLLEEMYED 575
>gi|367044868|ref|XP_003652814.1| hypothetical protein THITE_2114603 [Thielavia terrestris NRRL 8126]
gi|347000076|gb|AEO66478.1| hypothetical protein THITE_2114603 [Thielavia terrestris NRRL 8126]
Length = 845
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 12/199 (6%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLL 66
M Q + L I +V A R Y A NF +GRR V A CLY CR++ +L
Sbjct: 153 MNQFAHQLRI--PLHLVDKAHRLYRAASTSNFIQGRRKHTVAAVCLYAICRKEDHNKVML 210
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRL-LPGGNK 122
ID ++ + +V+ LG Y L + N+ + P I + +F +L
Sbjct: 211 IDLADIIKTDVFLLGKSYKDL-----LNSHPNLKEGTKPIIIEDLIFRFASKLEFLHDTN 265
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
KV +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V I + ATL
Sbjct: 266 KVALSAVRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIAKVTMATLQ 325
Query: 183 KRLIEFENTDSGSLTIEDF 201
+R+ EF N + +T+ F
Sbjct: 326 ERMEEFANVPAAQMTVAQF 344
>gi|291416192|ref|XP_002724331.1| PREDICTED: transcription initiation factor IIIB, partial
[Oryctolagus cuniculus]
Length = 502
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Query: 105 PSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 163
P +++ +F L G N +V TA +L MKRDW+ TGR+PSGLCGAAL V+A H
Sbjct: 1 PCLYIPRFAHLLEFGERNHEVSMTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDF 60
Query: 164 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
+ + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 61 RRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFM 99
>gi|312379936|gb|EFR26073.1| hypothetical protein AND_08083 [Anopheles darlingi]
Length = 557
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 168/412 (40%), Gaps = 135/412 (32%)
Query: 117 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 176
L G + + TA+ ++ MK+D I +GR+PSGLCGAAL ++A H + +DIV+IV I
Sbjct: 37 LSGEDTRSVMTAQRLVQRMKKDSIHSGRRPSGLCGAALLLAARMHDFGRTPNDIVRIVKI 96
Query: 177 CEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT 236
E+TL KRL EF T S +LT++
Sbjct: 97 HESTLRKRLFEFGETPSSALTVD------------------------------------- 119
Query: 237 GKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVA---ERERMVKA----------SAEE 283
EFM + LE PPAF+ A ++ER+ K AE
Sbjct: 120 --------------EFMAVD--LEAEQGPPAFKAARKKDKERLQKLEEQTTEFNQLQAEI 163
Query: 284 NSSFERE----------SDSPFMSRVDKVQSPEPESIGVPKNCTTQTASNEGEGD----H 329
+++ +RE S F+ D Q E ++ V + C + +G GD
Sbjct: 164 DAALDREMNGRGGKRRRSKYDFIELQDSDQFIEESNMSVIRECVSDAGVVDGTGDLGQQG 223
Query: 330 TKTPGVD---------------------------ATTEASDGSDNFSDIDDFEVDGYLHN 362
+ P V+ T+E DG D++D E+D Y+
Sbjct: 224 SGVPKVEHKPCIPEGLKPDLKAMCKVSVEVTVPEKTSEQDDGELITDDLNDDEMDAYIMT 283
Query: 363 EEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAA 422
EEE + K +W ++N EYL+E KE AA K EG ++ A
Sbjct: 284 EEEANTKNQLWMQLNEEYLKELQVKEERAA----------KQREEGKPEKKKRRTTKRKA 333
Query: 423 VAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFD 474
+ GP+ TA EA ++L +K++S+KINYD+L+ L D
Sbjct: 334 I------------------GPSSTAREAIEKILQEKKISNKINYDILKTLTD 367
>gi|171691422|ref|XP_001910636.1| hypothetical protein [Podospora anserina S mat+]
gi|170945659|emb|CAP71772.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 22 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYEL 80
++ A Y AV ++ KGRR V A C+Y ACR K +L+D ++ + +V+ L
Sbjct: 148 DVADTAMDIYREAVRASYVKGRRKHNVAAVCMYAACRLANQKQIMLLDLADIVKTDVFLL 207
Query: 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI 140
G Y +L + L D ++ IF L NK V ++A I M +D I
Sbjct: 208 GRNYKELMRRLPTFDTGYDPLTLENLIFRFAAKLEFLHDTNK-VANSALRIAHRMVKDNI 266
Query: 141 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIED 200
+ GR+P+G+ GAA+ ++A H + + ++V + + ATL +R+ EF + SL+I
Sbjct: 267 SIGRRPAGISGAAIIMAARAHNFRRTVREVVYVAKVTMATLQERMSEFAAVPAASLSIRQ 326
Query: 201 FMARKKELHEGVAANLP 217
FM + E+H + + P
Sbjct: 327 FM-QGDEMHPEASHDPP 342
>gi|71667191|ref|XP_820547.1| transcription factor [Trypanosoma cruzi strain CL Brener]
gi|70885896|gb|EAN98696.1| transcription factor, putative [Trypanosoma cruzi]
Length = 602
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 13/198 (6%)
Query: 2 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 61
E A M + L+I SD++V +A Y +AV N G R + ++ LY CR++
Sbjct: 76 EAARRGMLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-SILSAVLYAVCRRER 132
Query: 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-- 119
++ DFS+ + YE+ + +C+ + L +DPS +H+F +++ G
Sbjct: 133 TSHMIYDFSDVTGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGPM 187
Query: 120 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
G VC A +L +M+ DWI GR+P G+C AA+ V+ + S ++ V +
Sbjct: 188 TGPVVVC--ALKVLRAMRDDWIACGRRPMGVCVAAILVACYMFNIPRSPDEVCGFVRLTA 245
Query: 179 ATLMKRLIEFENTDSGSL 196
T+MKRL EF +T + L
Sbjct: 246 GTIMKRLDEFASTTTAGL 263
>gi|396490241|ref|XP_003843289.1| hypothetical protein LEMA_P073990.1 [Leptosphaeria maculans JN3]
gi|312219868|emb|CBX99810.1| hypothetical protein LEMA_P073990.1 [Leptosphaeria maculans JN3]
Length = 713
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Query: 23 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR-QKSKPFLLIDFSNYLNINVYELG 81
++ A +Y +A+ NF +GRR V A +Y+A R Q LL+D + NV+ LG
Sbjct: 147 VIDQAVGWYKLAMNHNFIQGRRIRNVAAVAIYMAARRQPENTLLLMDLAEKTQTNVWALG 206
Query: 82 AVYLQLCQVLYIADESNV-----LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASM 135
Y + L D + + +++++P + K+ +L + KV D A +L M
Sbjct: 207 DTYKAFLKKLGEDDPATLSGNKAVQEIEP--LMLKYCRKLEFAEASHKVADDACKLLRRM 264
Query: 136 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGS 195
RDW+ GR+P+GLCGA + ++A + + + ++V +V + ++T+ RL E++ T S +
Sbjct: 265 GRDWMVQGRQPAGLCGACIILAARMNNFRRTVREVVYVVKVADSTINSRLYEYKKTPSSA 324
Query: 196 LTIEDFMARKKEL 208
LT++ F ++L
Sbjct: 325 LTVKQFREMGQQL 337
>gi|407847988|gb|EKG03518.1| hypothetical protein TCSYLVIO_005435 [Trypanosoma cruzi]
Length = 602
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 13/198 (6%)
Query: 2 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 61
E A M + L+I SD++V +A Y +AV N G R + ++ LY CR++
Sbjct: 76 EAARRGMLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-AILSAVLYAVCRRER 132
Query: 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-- 119
++ DFS+ + YE+ + +C+ + L +DPS +H+F +++ G
Sbjct: 133 TSHMIYDFSDVAGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGPM 187
Query: 120 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
G VC A +L +M+ DWI GR+P G+C AA+ V+ + S ++ V +
Sbjct: 188 TGPVVVC--ALKVLRAMRDDWIACGRRPMGVCVAAILVACYMFNIPRSPDEVCGFVRLTA 245
Query: 179 ATLMKRLIEFENTDSGSL 196
T+MKRL EF +T + L
Sbjct: 246 GTIMKRLDEFASTTTAGL 263
>gi|407408753|gb|EKF32070.1| hypothetical protein MOQ_004090 [Trypanosoma cruzi marinkellei]
Length = 602
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 13/198 (6%)
Query: 2 EKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS 61
E A M + L+I SD++V +A Y +AV N G R + ++ LY CR++
Sbjct: 76 EAARRGMLSIARQLDI--SDDMVEMAVALYKLAVGLNAVSGARP-AILSAVLYAVCRRER 132
Query: 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-- 119
++ DFS+ + YE+ + +C+ + L +DPS +H+F +++ G
Sbjct: 133 TSHMIYDFSDVTGESPYEILSYMRNICEATHTE-----LPVIDPSCMVHRFAEQMNLGSM 187
Query: 120 -GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
G VC A +L +M+ DWI GR+P G+C +A+ V+ + S ++ V +
Sbjct: 188 TGPVVVC--ALKVLRAMRDDWIACGRRPMGVCVSAILVACYMFNIPRSPDEVCGFVRLTA 245
Query: 179 ATLMKRLIEFENTDSGSL 196
T+MKRL EF +T + L
Sbjct: 246 GTIMKRLDEFASTTTAGL 263
>gi|126631222|gb|AAI33656.1| BRF1 protein [Homo sapiens]
Length = 184
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|296475327|tpg|DAA17442.1| TPA: BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Bos taurus]
Length = 493
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 56/76 (73%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LT+++FM
Sbjct: 62 EFEDTPTSQLTVDEFM 77
>gi|74355107|gb|AAI03862.1| BRF1 protein [Homo sapiens]
Length = 161
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|170043421|ref|XP_001849386.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
gi|167866782|gb|EDS30165.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
Length = 533
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 104 DPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 162
+P I++ ++ ++L +V TA+ ++ MK+D I +GR+PSGLCGAAL ++A H
Sbjct: 56 NPCIYIMRYANKLEFADKTHEVSMTAQRLVQRMKKDSIHSGRRPSGLCGAALLIAARMHE 115
Query: 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
S SDIV+IV I E+TL KRL+EF T S +LT+++FM+
Sbjct: 116 FSRSPSDIVRIVKIHESTLRKRLVEFGETPSSALTLDEFMS 156
>gi|449449894|ref|XP_004142699.1| PREDICTED: uncharacterized protein LOC101217202 [Cucumis sativus]
Length = 236
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 26/131 (19%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
++ D+ D EV+ YL+N +E HYKKIIWE++N++YL++QAAK+
Sbjct: 27 EDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKK----------------- 69
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKIN 465
Q L A+AV K K++Q R EA + PAQ TR M KKRLSSK N
Sbjct: 70 -------QGLNVVGASAVVKKSKKRQ--RKTEAPINMPAQADTGTTREMQIKKRLSSKFN 120
Query: 466 YDVLEKLFDDS 476
+DVL+KLF D+
Sbjct: 121 FDVLDKLFSDT 131
>gi|389601476|ref|XP_001565544.2| putative transcription factor [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505058|emb|CAM39038.2| putative transcription factor [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 696
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 12/211 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR++
Sbjct: 83 IDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNVVSGTRP-SVLCACLYAACRRE 139
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 118
++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 140 RTSHVIYDFSETNGEDPHTI------LSQLKYICHATHTEVPVIDPSCYVQRFAEQMDLG 193
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
K V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V +
Sbjct: 194 PQTKDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLTS 253
Query: 179 ATLMKRLIEFENTDSGSL-TIEDFMARKKEL 208
T+ KRL EF T + L I+D+ + L
Sbjct: 254 NTIGKRLTEFAATPTARLENIDDYQPSNETL 284
>gi|307188627|gb|EFN73337.1| Transcription factor IIIB 90 kDa subunit [Camponotus floridanus]
Length = 205
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 24/172 (13%)
Query: 103 VDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 161
+DP +++ KF +L G K V TA IL M +D I GR+PSGLCGAAL ++A H
Sbjct: 33 LDPCLYIEKFARKLEFGKETKAVARTATRILQRMNKDSIHIGRRPSGLCGAALLIAARLH 92
Query: 162 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF--------------MARKK- 206
S +DI+KIV + E+TL KRL+EF +T S +LT+++F ARKK
Sbjct: 93 EFNRSPADIIKIVKVHESTLRKRLMEFGDTPSSALTLDEFETVDLEEEDPPAFKAARKKD 152
Query: 207 -ELHEGVAANLPNNGPKVSGMNEVL---CKHK----DTGKPFACGLCRSCYE 250
E +GV +L K + E + C+ K D G +C + R E
Sbjct: 153 RERLQGVLNSLIAKSAKADLVRESVTNCCRQKDYRIDAGSDISCDVGRMSTE 204
>gi|342185178|emb|CCC94661.1| putative transcription factor [Trypanosoma congolense IL3000]
Length = 612
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 9/197 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E A M + L++G D++V A Y +AV N G R V ++ LY+ CR++
Sbjct: 73 VEAARRGMATIARQLDVG--DDMVESALGLYKLAVNLNAVTGARP-VVLSAVLYVMCRRE 129
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
++ DF++ + + YE+ A +C+ + DPS +H+F +++ L
Sbjct: 130 RTSHMVFDFADAIGESPYEILAYMHHICEA-----TRTTIPVADPSCLVHRFAEQMNLGN 184
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ V A +L +M DWI GR+P G+C AAL V+ + S ++ +V +
Sbjct: 185 MTRPVIICALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSPDEVCGLVRLTAG 244
Query: 180 TLMKRLIEFENTDSGSL 196
T+ +RL EF T++ L
Sbjct: 245 TITRRLDEFAETNTADL 261
>gi|157870494|ref|XP_001683797.1| putative transcription factor [Leishmania major strain Friedlin]
gi|68126864|emb|CAJ04697.1| putative transcription factor [Leishmania major strain Friedlin]
Length = 703
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 12/211 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR++
Sbjct: 82 IDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRRE 138
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 118
++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 139 RTSHVIYDFSEINGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDLG 192
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V +
Sbjct: 193 PQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLTS 252
Query: 179 ATLMKRLIEFENTDSGSL-TIEDFMARKKEL 208
T+ KRL EF T + L I+D+ + L
Sbjct: 253 NTIGKRLTEFAATPTARLENIDDYQPSHETL 283
>gi|302423884|ref|XP_003009772.1| transcription factor tfiiib complex subunit brf1 [Verticillium
albo-atrum VaMs.102]
gi|261352918|gb|EEY15346.1| transcription factor tfiiib complex subunit brf1 [Verticillium
albo-atrum VaMs.102]
Length = 681
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 94/176 (53%), Gaps = 13/176 (7%)
Query: 23 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACR---------QKSKPFLLIDFSNYL 73
IV A + +A+ + FT+GR + V A+C+Y A R ++++ +++D ++
Sbjct: 119 IVDKAVATFKLAMGQGFTQGRTLQMVCAACIYYAFRSQERVEGNERETQFVMMLDLADLT 178
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCDTARDIL 132
+NV+ LG + L + I ++ + P +H+ +L G KV + A ++
Sbjct: 179 RLNVFRLGRCFKALVNKVPIG---SLACTIFPEDIIHRLATKLDFGPQTDKVAEDAVRLI 235
Query: 133 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
SM+RDWI GR+PSG+CGA L ++A + + + ++V IV + T+ +R+ E
Sbjct: 236 TSMRRDWIIMGRRPSGICGACLLMAARMNNFRRTMREVVYIVKVTSHTIQERMKEI 291
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Query: 352 DDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQA 411
DD EV L + EE K+I+W N+++L + +E LEA P
Sbjct: 499 DDVEVMNALLSPEEVKLKEIVWVNENQDWLRKNQQREF-----DRKLEAGKPKRP----- 548
Query: 412 AQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEK 471
+++ + R EA+ S PA T +EA + ++ +S ++NYD +
Sbjct: 549 ----------------RKRNKPRLGEAQTS-PASTPIEAAQNVMKHHGMSKRLNYDAISS 591
Query: 472 LFD 474
L +
Sbjct: 592 LLN 594
>gi|336270840|ref|XP_003350179.1| hypothetical protein SMAC_01071 [Sordaria macrospora k-hell]
gi|380095574|emb|CCC07047.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 862
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 22/214 (10%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
M+Q L IG+S I +A R+Y NF +GRR + + + +LI
Sbjct: 142 MQQYSYQLRIGQS--ISDIAFRYYKACSHANFVQGRRKQNGE----------NNHKIMLI 189
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRL-LPGGNKK 123
D ++ L ++V+ LG Y ++ L P + +++F +L K
Sbjct: 190 DLADLLKVDVFALGRGYKD-----FLTRFPEFLTGPRPIVIEDLIYRFASKLEFLHDTNK 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V +A I M+ D IT GR+P+G+CGAAL ++A H + + ++V IV + AT+ +
Sbjct: 245 VALSAVRIAKRMQHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIVKVTMATIQE 304
Query: 184 RLIEFENTDSGSLTIEDFMARKKELHEGVAANLP 217
R+ EF + + LT++DF K L G A + P
Sbjct: 305 RMDEFASVPAAQLTVQDFH-NKDPLEAGPAHDPP 337
>gi|401423221|ref|XP_003876097.1| putative transcription factor [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492338|emb|CBZ27612.1| putative transcription factor [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 703
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 12/211 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR++
Sbjct: 82 IDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRRE 138
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 118
++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 139 RTSHVIYDFSELNGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDLG 192
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V +
Sbjct: 193 PQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLTS 252
Query: 179 ATLMKRLIEFENTDSGSL-TIEDFMARKKEL 208
T+ KRL EF T + L I+D+ + L
Sbjct: 253 NTIGKRLTEFAATPTARLENIDDYQPSHETL 283
>gi|9909700|emb|CAC04512.1| transcription factor II B-related factor [Homo sapiens]
gi|74355580|gb|AAI03860.1| BRF1 protein [Homo sapiens]
Length = 134
Score = 90.5 bits (223), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 61
Query: 187 EFENTDSGSLTIEDFM 202
EFE+T + LTI++FM
Sbjct: 62 EFEDTPTSQLTIDEFM 77
>gi|186479065|ref|NP_001117389.1| transcription regulator / translation initiation factor /zinc ion
binding / transcription activator [Arabidopsis thaliana]
gi|332193099|gb|AEE31220.1| transcription regulator / translation initiation factor /zinc ion
binding / transcription activator [Arabidopsis thaliana]
Length = 254
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITTGRKPSG 148
+LY+ + VDPS F+ +F+++LL G NK+V +TA I+ASMK +W+ TGRKPSG
Sbjct: 1 MLYLTENRKYENLVDPSTFIPRFSNKLLKGAHNKQVVETATHIIASMKSNWMQTGRKPSG 60
Query: 149 LCGAALYVSALTHG 162
+CGAALY +AL+HG
Sbjct: 61 ICGAALYTAALSHG 74
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 95/218 (43%), Gaps = 72/218 (33%)
Query: 261 GGADPPAFQVAERERMV-KASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTTQ 319
GG+DPP+FQ AE+ERM KAS EEN DK Q+
Sbjct: 74 GGSDPPSFQRAEKERMEEKASTEEN---------------DKQQN--------------- 103
Query: 320 TASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNRE 379
SD S SD+DD E+D Y N +E H +II++ N
Sbjct: 104 ----------------------SDESSTLSDLDDGELDCYFRNPKEVHLVEIIFDHENPG 141
Query: 380 YLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAK 439
Y E++AA A A EAS AA AKSRK+K+Q+RA E K
Sbjct: 142 YDEKEAAALNACNNASNLFEAS------------------KAAAAKSRKDKRQQRAEEEK 183
Query: 440 NSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDDSV 477
N+ P TA+EA M+ +K+ N D LE+L D S
Sbjct: 184 NAPPPATAMEAVDSMVKRKKFPD-TNCDYLEELLDTSA 220
>gi|146088536|ref|XP_001466078.1| putative transcription factor [Leishmania infantum JPCM5]
gi|398016374|ref|XP_003861375.1| transcription factor, putative [Leishmania donovani]
gi|134070180|emb|CAM68513.1| putative transcription factor [Leishmania infantum JPCM5]
gi|322499601|emb|CBZ34675.1| transcription factor, putative [Leishmania donovani]
Length = 703
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 12/211 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++KA +M + L I S++ V A Y +A+ N G R V +CLY ACR++
Sbjct: 82 IDKARREMLNISRQLEI--SEDTVERALGIYKVALNLNAVSGTRP-SVLCACLYAACRRE 138
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 118
++ DFS + + + L Q+ YI ++ + +DPS ++ +F +++ L
Sbjct: 139 RTSHVIYDFSEVNGEDPHTI------LSQMKYICHATHTEVPVIDPSCYVQRFAEQMDLG 192
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
V A +L +M+ DWI+ GR+P G+C AAL V+ G+ + + +V +
Sbjct: 193 PQTTDVVVCALKVLRAMQDDWISCGRRPMGVCAAALLVACYVFGISRTPEQVCGMVRLTS 252
Query: 179 ATLMKRLIEFENTDSGSL-TIEDFMARKKEL 208
T+ KRL EF T + L I+D+ + L
Sbjct: 253 NTIGKRLTEFAATPTARLENIDDYQPSHETL 283
>gi|413946302|gb|AFW78951.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
Length = 148
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 57/77 (74%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++K D++RQ+ N L+I + IV A RFY +A+ RNFT+GRRT V A+CLY+ACRQ
Sbjct: 72 LDKGRDEIRQIVNNLHISGGETIVSKAFRFYELALDRNFTRGRRTTHVAAACLYIACRQS 131
Query: 61 SKPFLLIDFSNYLNINV 77
K +LLIDFS++L I+V
Sbjct: 132 KKAYLLIDFSDHLQISV 148
>gi|405954038|gb|EKC21579.1| Transcription factor IIIB 90 kDa subunit [Crassostrea gigas]
Length = 503
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 25/130 (19%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A F+ +AV R T+GR+T V A+CLY+ INVY LG
Sbjct: 107 IDTAFNFFKMAVNRRMTQGRKTTHVIAACLYI-------------------INVYSLGKT 147
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITT 142
YLQL + L I + +DP +++ +F +L G +V TA +++ MKRDW+ T
Sbjct: 148 YLQLSRALCIN-----IPAIDPCLYIPRFAHKLEFGEKTHEVSMTALRLVSRMKRDWMHT 202
Query: 143 GRKPSGLCGA 152
GR+PSGLCGA
Sbjct: 203 GRRPSGLCGA 212
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 43/174 (24%)
Query: 303 QSPEPESIG---VPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDG- 358
+ P E+IG V K C NE EG+ K A DG + + IDD E++
Sbjct: 274 RKPLQETIGMIDVVKKCV-----NEDEGESEK---------AEDGELDLTGIDDDELEKQ 319
Query: 359 YLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAA 418
++ EEE K +W N++YL KE A + E KN PE + +
Sbjct: 320 FVLTEEEIELKTNLWMAENKDYLIALKEKEERLAKER---EEEAKN-PEKKKPKRTRKKR 375
Query: 419 AAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
A +A EA +++ ++++S+KINYDVL L
Sbjct: 376 VPIQAA---------------------SAEEAIYKVIHERKISNKINYDVLNDL 408
>gi|307192896|gb|EFN75924.1| Transcription factor IIIB 90 kDa subunit [Harpegnathos saltator]
Length = 483
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 59/81 (72%)
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V TA+ ++ MKRD I +GR+PSGLCGAAL ++A H S +DI+KIV + E+TL
Sbjct: 15 EVSMTAQRVVKRMKRDSIHSGRRPSGLCGAALLIAARLHEFNRSPADIIKIVKVHESTLR 74
Query: 183 KRLIEFENTDSGSLTIEDFMA 203
KRL+EF +T S +LT+++FM
Sbjct: 75 KRLMEFGDTPSSALTLDEFMT 95
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 348 FSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPE 407
+DIDD E+D Y+ +E+E +YK +W+++N EYL
Sbjct: 239 INDIDDEELDSYILSEKESNYKSALWKKVNAEYL-------------------------- 272
Query: 408 GLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYD 467
+E + ++KR KN PA TA EA +ML +K++ S INY+
Sbjct: 273 ----VKEKEKEEKRLKETEEGKPEKKRRRTKKNKTPANTAGEAIEKMLQEKKICSLINYE 328
Query: 468 VLEKL 472
L L
Sbjct: 329 ALNIL 333
>gi|344238808|gb|EGV94911.1| Transcription factor IIIB 90 kDa subunit [Cricetulus griseus]
Length = 416
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 142/340 (41%), Gaps = 62/340 (18%)
Query: 161 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----------------- 203
H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 2 HDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQR 61
Query: 204 --RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEG 261
R K+L + ++ L ++S + + + +P A G + ++ G +
Sbjct: 62 KLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLSKD----GSGEDS 117
Query: 262 GADPPAFQVAERERMVKASAEENSSFERESDSPFMSRVDKVQSPEPESIGVPKNCTT--- 318
P + E E + A++ N F RE + +P+ P +
Sbjct: 118 TPSPFCEEDTEDEELEAAASHMNKDFYREL---LGDGGGSEGTGDPDGGSRPLALESLLG 174
Query: 319 --QTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKII 372
TA++ G D + +P D + DG + S IDD E+D Y+ NE E K +
Sbjct: 175 PLPTAASLGISDSIRECISSPSGDPKDTSGDGELDLSGIDDLEIDRYILNESEARVKAEL 234
Query: 373 WEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQ 432
W N EYL EQ KEA A K EL KE +
Sbjct: 235 WMRENAEYLREQKEKEARIAKEK------------------ELGIY---------KEHKP 267
Query: 433 KRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 268 KKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 307
>gi|332028619|gb|EGI68654.1| Transcription factor IIIB 90 kDa subunit [Acromyrmex echinatior]
Length = 301
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 64/98 (65%), Gaps = 7/98 (7%)
Query: 108 FLHKFTDRLLPGGNKK--VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 165
F HK L G+K V TA ++ MKRD I +GR+PSGLCGAAL ++A H
Sbjct: 3 FAHK-----LEFGDKTHTVSMTALRVVQRMKRDSIHSGRRPSGLCGAALLIAARLHEFSR 57
Query: 166 SKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
S +DI+KIV + E+TL KRL+EF +T S +LT+++FM
Sbjct: 58 STADIIKIVKVHESTLRKRLLEFGDTPSSALTLDEFMT 95
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV R +GR E V A+C+Y ACR P L + S+ ++ E+G Y
Sbjct: 137 AARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKKEIGRSYR- 195
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL R +T+G
Sbjct: 196 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRKAVEILEEAYRKGLTSG 248
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ +I + E T+ R E
Sbjct: 249 KSPAGLVAAALYIASLLEGEKRTQREVAEIARVTEVTVRNRYKEL 293
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV R +GR E V A+C+Y ACR P L + S+ ++ E+G Y
Sbjct: 133 AARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKKEIGRSYR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL R +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRKAVEILEEAYRKGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|357622232|gb|EHJ73796.1| TFIIB-related factor [Danaus plexippus]
Length = 458
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA ++ MKRD I +GR+PSG+CGAAL ++A H + +D+V+IV I E TL KRL+
Sbjct: 2 TALRLVQRMKRDSIHSGRRPSGVCGAALLIAARLHDFSRTPTDVVRIVKIHETTLRKRLL 61
Query: 187 EFENTDSGSLTIEDFM 202
EF T S +LT+++FM
Sbjct: 62 EFGETPSSALTLDEFM 77
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 27/117 (23%)
Query: 356 VDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQEL 415
+D + +EE +K ++W +N YL+EQ KE E K EG
Sbjct: 237 LDSLIMTDEEARHKTLLWHNINAGYLKEQKIKE----------EIRAKEREEG------- 279
Query: 416 AAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
K+K+ + + + K + TA EA +ML +K++SSKINYD+L+ L
Sbjct: 280 ----------KDKKKKTRGSYKKKVAITGATAGEAVGKMLAEKKMSSKINYDILKSL 326
>gi|261333929|emb|CBH16923.1| transcription factor IIIb, putative [Trypanosoma brucei gambiense
DAL972]
Length = 543
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 9/197 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E A M + L++ SD++V A Y +AV+ N G R + + LY CR++
Sbjct: 8 IEAARRGMATIARQLDV--SDDMVEAALGLYKLAVSLNAVSGARP-AILCAVLYAMCRRE 64
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
++ DF++ + Y++ + +C+ A + V +DPS +H+F +++ L
Sbjct: 65 RTSHMVFDFADATGESPYDILSYMHLVCE----ATRTEV-PVIDPSCVVHRFAEQMNLGQ 119
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ V A +L +M DWI GR+P G+C AAL V+ + S ++ V +
Sbjct: 120 MTRSVVVCALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSPDEVCGFVRLTAG 179
Query: 180 TLMKRLIEFENTDSGSL 196
T+ +RL EF T + +L
Sbjct: 180 TISRRLDEFAATSTAAL 196
>gi|71754449|ref|XP_828139.1| transcription factor [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833525|gb|EAN79027.1| transcription factor, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 608
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 9/197 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E A M + L++ SD++V A Y +AV+ N G R + + LY CR++
Sbjct: 73 IEAARRGMATIARQLDV--SDDMVEAALGLYKLAVSLNAVSGARP-AILCAVLYAMCRRE 129
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
++ DF++ + Y++ + +C+ A + V +DPS +H+F +++ L
Sbjct: 130 RTSHMVFDFADATGESPYDILSYMHLVCE----ATRTEV-PVIDPSCVVHRFAEQMNLGQ 184
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ V A +L +M DWI GR+P G+C AAL V+ + S ++ V +
Sbjct: 185 MTRSVVVCALKVLRAMHDDWIACGRRPLGVCVAALLVACYMFNIPRSPDEVCGFVRLTAG 244
Query: 180 TLMKRLIEFENTDSGSL 196
T+ +RL EF T + +L
Sbjct: 245 TISRRLDEFAATSTAAL 261
>gi|223994943|ref|XP_002287155.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976271|gb|EED94598.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 386
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA ++A MKRDWI GR+P+G+C AAL +++ HG D+ K++ +C T+M R+
Sbjct: 2 TALRLVARMKRDWIVAGRRPAGICAAALLIASRAHGFDRQHHDVTKVLRVCGLTVMSRVK 61
Query: 187 EFENTDSGSLTIEDF 201
EFE T S LT+E+F
Sbjct: 62 EFEATPSAGLTLEEF 76
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 18/123 (14%)
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 414
EVD H ++E ++ ++ NREY+E Q KE A+AA +A ++
Sbjct: 258 EVDFLFHTDDEVREREAVFNLQNREYIEIQHQKENERLLAEAASKAKQED---------- 307
Query: 415 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQ-TALEATRRMLTKKRLSSKINYDVLEKLF 473
+A+ ++ + + A+ P + T EA ++ +++S KINYD + LF
Sbjct: 308 -------EIAQEEGRRRYLKTSRARKRNPNELTTEEALLEVVRTRKISRKINYDAMSALF 360
Query: 474 DDS 476
DD+
Sbjct: 361 DDT 363
>gi|361127358|gb|EHK99329.1| putative Transcription factor IIIB 60 kDa subunit [Glarea
lozoyensis 74030]
Length = 775
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 28/196 (14%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
M Q+ L+I ES + H + +AV NF +GRRTE V A
Sbjct: 143 MNQLAQQLHIQES-TVTH-GVQILKLAVMNNFIQGRRTEMVCAP---------------- 184
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCD 126
NV++LG + L + + + + V P + +F +L G +KV +
Sbjct: 185 ------QCNVFKLGRTFKALHTSVTL---NGGIYPVVPEDLIWRFAAKLEFGQLTEKVAE 235
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A ++ M DW+ GR+PSG+CGA L ++A + + + +++V IV + T+ KRL
Sbjct: 236 DAVRMVQRMSLDWMVVGRRPSGVCGACLILAARMNNFRRTITEVVYIVKVTTHTIQKRLD 295
Query: 187 EFENTDSGSLTIEDFM 202
EF+ T + +LT+++F+
Sbjct: 296 EFKMTPTSNLTVDEFL 311
>gi|389852789|ref|YP_006355023.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
gi|388250095|gb|AFK22948.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
Length = 261
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 94 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 152
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL R +T+G
Sbjct: 153 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYRRGLTSG 205
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 206 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 250
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL R +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYRRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++R+ N L++ S+ I A + Y A+ R +GR E V A LY A R+ ++P
Sbjct: 118 ALTELRRASNRLHV--SNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRP 175
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ + E+G Y LC+ L I + PS +++KF L NK
Sbjct: 176 ITLDEISDTFEVERKEVGKAYRLLCRELGIK-----ILPTSPSDYIYKFASE-LKVSNKT 229
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V D + +L + +T+G+ P G+ A LYVS L + K ++ D K I E T+
Sbjct: 230 VSDAVK-LLKEAEDKGLTSGKGPMGIAAAVLYVSTLINKEKKTQRDAAKAAGITEVTIRN 288
Query: 184 RLIEF 188
R E
Sbjct: 289 RYKEL 293
>gi|429963838|gb|ELA45836.1| hypothetical protein VCUG_02677, partial [Vavraia culicis
'floridensis']
Length = 247
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 103 VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 162
+DPS+FLH+F +L N+K+ A +++ MKRDWI GR+P+ LCGAAL ++ +G
Sbjct: 5 IDPSLFLHRFFAKL-KLKNEKILFFAMRLISRMKRDWIVVGRRPNNLCGAALVTASRVYG 63
Query: 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
+ S ++VK V + T+ RL E +T S +LT+ DF
Sbjct: 64 EERSVLEVVKAVRVSPHTINIRLKEMCDTQSANLTVSDFF 103
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV R +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSY-- 190
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G +++V A +IL + +T+G
Sbjct: 191 ----RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSERVRRRAIEILEEAYKRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|45954|emb|CAA50006.1| transcription factor IIB [Pyrococcus woesei]
Length = 261
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 94 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 152
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 153 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 205
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 206 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 250
>gi|2392147|pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 33 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 91
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 92 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 144
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 145 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 189
>gi|116195418|ref|XP_001223521.1| hypothetical protein CHGG_04307 [Chaetomium globosum CBS 148.51]
gi|88180220|gb|EAQ87688.1| hypothetical protein CHGG_04307 [Chaetomium globosum CBS 148.51]
Length = 775
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 66
M Q + L I + + A + Y A NF +GRR V A C+Y CR++ + +L
Sbjct: 145 MNQFAHQLQI--APLVAEKAFQVYKFASNSNFIQGRRKNTVAAVCVYAVCRKEDNNKVML 202
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVC 125
ID ++ + +V+ LG Y L L D + K + + +F +L KV
Sbjct: 203 IDLADIIKTDVFLLGRSYKDLLAAL--PDMKDGTKPIIIEDLIFRFATKLEFLHDTNKVA 260
Query: 126 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
+A I M+ D IT GR+P+G+CGAAL ++A H + + ++V I + TL +
Sbjct: 261 LSAIRIAQRMRHDNITHGRRPAGICGAALIMAARAHNYRRTVREVVYIAKVTMTTLQE 318
>gi|6573567|pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 201
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 34 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 92
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 93 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 145
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 146 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 190
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYKRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|156062930|ref|XP_001597387.1| hypothetical protein SS1G_01581 [Sclerotinia sclerotiorum 1980]
gi|154696917|gb|EDN96655.1| hypothetical protein SS1G_01581 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 708
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 29/196 (14%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
M+ + N L I E+ +V V + + +A NF +GRRT+ V A
Sbjct: 127 MQALANQLGISEN--VVGVGHQIFKLASMNNFIQGRRTDLVAA----------------- 167
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
+NV+ LG + L + + +A ++ + V P + KF +L +KV D
Sbjct: 168 -------VNVFTLGRYFKALHKQISLA--TDGILPVLPEDLIWKFASKLEFYEQTEKVAD 218
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A ++ M DW+ GR+PSG+CGA L ++A + + + +++V +V + AT+ KRL
Sbjct: 219 DAIRMVRRMSLDWMVMGRRPSGVCGACLILAARMNNFRRTVTEVVYVVKVTTATIQKRLE 278
Query: 187 EFENTDSGSLTIEDFM 202
EF+ T S +LT+E+F+
Sbjct: 279 EFKRTPSSALTVEEFL 294
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++R N L++ S+ I A + Y A+ R +GR E V A LY A R+ ++P
Sbjct: 118 ALTELRHASNRLHV--SNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRP 175
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y LC+ L I + PS +++KF L G + K
Sbjct: 176 ITLDEISETFEVERKEVGKAYRLLCRELGIK-----ILPSSPSDYIYKFASEL--GVSNK 228
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
A +L + +T+G+ P G+ A LYV+ L + K ++ D K I E T+
Sbjct: 229 TVSDAVKLLKEAEDKGLTSGKGPMGIAAAVLYVATLINKEKKTQRDAAKAAGITEVTIRN 288
Query: 184 RLIEF 188
R E
Sbjct: 289 RYKEL 293
>gi|193788404|dbj|BAG53298.1| unnamed protein product [Homo sapiens]
Length = 439
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 139/371 (37%), Gaps = 123/371 (33%)
Query: 161 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI---------------------- 198
H + + +++ +V +CE+TL KRL EFE+T + LTI
Sbjct: 2 HDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQR 61
Query: 199 -------EDFMARKKELHEG--------VAANLPNNGPKVSGMNEVLCKH---KDTGKPF 240
E +++K E EG + L N+ PK G L K +DT
Sbjct: 62 KLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSL 121
Query: 241 ACG---------------LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS 285
CG L + Y E + GGA S+E
Sbjct: 122 -CGEEDTEDEELEAAASHLNKDLYRELL-------GGA--------------PGSSEAAG 159
Query: 286 SFERESDSPFM-SRVDKVQSPEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEA 341
S E P + S +D + P S+G+ + C + +S D +
Sbjct: 160 SPEWGGRPPALGSLLDPL--PTAASLGISDSIRECISSQSS-------------DPKDAS 204
Query: 342 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 401
DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 205 GDGGLDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK------ 258
Query: 402 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 461
EL KE + K++ + + A TA EA +ML +K++S
Sbjct: 259 ------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKIS 297
Query: 462 SKINYDVLEKL 472
SKINY VL L
Sbjct: 298 SKINYSVLRGL 308
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEIGRSFR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYQRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|338753412|ref|NP_001229718.1| transcription factor IIIB 90 kDa subunit isoform 7 [Homo sapiens]
Length = 439
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 139/371 (37%), Gaps = 123/371 (33%)
Query: 161 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTI---------------------- 198
H + + +++ +V +CE+TL KRL EFE+T + LTI
Sbjct: 2 HDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQR 61
Query: 199 -------EDFMARKKELHEG--------VAANLPNNGPKVSGMNEVLCKH---KDTGKPF 240
E +++K E EG + L N+ PK G L K +DT
Sbjct: 62 KLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGGLASLAKDGSTEDTASSL 121
Query: 241 ACG---------------LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENS 285
CG L + Y E + GGA S+E
Sbjct: 122 -CGEEDTEDEELEAAASHLNKDLYRELL-------GGA--------------PGSSEAAG 159
Query: 286 SFERESDSPFM-SRVDKVQSPEPESIGVP---KNCTTQTASNEGEGDHTKTPGVDATTEA 341
S E P + S +D + P S+G+ + C + +S D +
Sbjct: 160 SPEWGGRPPALGSLLDPL--PTAASLGISDSIRECISSQSS-------------DPKDAS 204
Query: 342 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 401
DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 205 GDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK------ 258
Query: 402 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLS 461
EL KE + K++ + + A TA EA +ML +K++S
Sbjct: 259 ------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQKKIS 297
Query: 462 SKINYDVLEKL 472
SKINY VL L
Sbjct: 298 SKINYSVLRGL 308
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV R +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIGRSFR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A ++L +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIELLEEAYNRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|156375641|ref|XP_001630188.1| predicted protein [Nematostella vectensis]
gi|156217204|gb|EDO38125.1| predicted protein [Nematostella vectensis]
Length = 114
Score = 79.0 bits (193), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 53/75 (70%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +++ MKRDWI GR+PSGLCGAAL V++ H S ++VK+V I + T+ KRL
Sbjct: 2 TALRLVSRMKRDWIHHGRRPSGLCGAALLVASRLHSFNRSVREVVKVVRISDTTIRKRLG 61
Query: 187 EFENTDSGSLTIEDF 201
EF++T S LTI++F
Sbjct: 62 EFKDTPSSQLTIDEF 76
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A++ + +GR E + + LY ACRQ+ P
Sbjct: 182 ALSEIDRMSSALGVPRS--VREVASVMYRRALSEDLIRGRSIEGMSTAVLYAACRQEGIP 239
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+ Y + Q L + ++ VDP +L +F +L +++
Sbjct: 240 RSLSEVTEVSRVENKEIARTYRYVSQELELE-----MRPVDPKKYLPRFCSQL--DVSER 292
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
+ A +I+ + I +G+ P+G AA+Y S+L +G K ++ + ++ + E T+
Sbjct: 293 IQSKAEEIIDTSAEQGILSGKSPTGFAAAAIYSSSLLYGEKKTQKQVAEVAQVTEVTIRN 352
Query: 184 RLIE 187
R E
Sbjct: 353 RYQE 356
>gi|71394065|gb|AAZ32104.1| archaeal transcriptional initiation factor TFB [uncultured
euryarchaeote Alv-FOS5]
Length = 474
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 9/187 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A D+ ++ + L G I A Y AV + +GR E V A+ +Y+ CRQ P
Sbjct: 288 AMGDLERISSYL--GLPSNIREAAALLYRKAVEKGLIRGRLIESVVAAVIYMICRQYGIP 345
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S I E+G Y L + LY+ + +P ++ +F L G + K
Sbjct: 346 RTLDEISEVSGITKKEIGRTYRFLKKELYVD-----VPLTNPIYYVPRFASAL--GLSGK 398
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V + A++IL + +GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+
Sbjct: 399 VQEKAKEILNEAVEKGLISGRGPTGVAAAAVYIASVMMGERRTQKEVAEVAGVTEVTIRN 458
Query: 184 RLIEFEN 190
R E +
Sbjct: 459 RYRELKR 465
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 95/189 (50%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G E+ A Y A++ + GR E V + LY + RQ
Sbjct: 139 LKQALGEIERMASAL--GLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQL 196
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
S P + + +N I+ E Y + + L + + DP+ ++ +F L LP
Sbjct: 197 STPRSIDEVANVSRIDEMEFKRTYRYIVRELSLE-----VAPADPAQYVPRFASDLDLP- 250
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V +R+++++ + D +T+G+ P GL AA+Y S+L K ++S++ ++ + E
Sbjct: 251 --DEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEV 308
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 309 TIRNRYQEL 317
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY ACRQ P
Sbjct: 141 ALSELDRMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVP 198
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + Y ++ E+G Y + + L + L P+ ++ +F L G + +
Sbjct: 199 RTLDEIATYSRVDRKEIGRTYRFITRELGLK-----LMPTSPADYIPRFCAAL--GLSGE 251
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +T+GR P+G+ AALYV+++ G + ++ ++ ++ + E T+
Sbjct: 252 VQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRN 311
Query: 184 RLIEF 188
R E
Sbjct: 312 RYKEL 316
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 7/177 (3%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+ A +G I +A Y AV +GR E V A+CLY ACR P L +
Sbjct: 127 RMASQLGLPRNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTLDEIEE 186
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y + + L++ L P ++ +F D+L G +++ + A I
Sbjct: 187 VARVDKKEIGRSYRFIARELHLR-----LTPTSPIDYVSRFADQL--GLSERTKNRAVKI 239
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
L + +T+GR P G+ AALY++++ G K ++ ++ ++ H+ E T+ R E
Sbjct: 240 LQKAIKLGLTSGRGPMGVAAAALYIASVLEGEKKTQREVAEVAHVTEVTVRNRYKEL 296
>gi|340058194|emb|CCC52548.1| putative transcription factor, fragment [Trypanosoma vivax Y486]
Length = 537
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
A + SD++V A Y +AV+ N G R V + LY CR++ ++ DF+
Sbjct: 84 ARQLAVSDDMVETALAVYKMAVSMNAVSGARP-VVLCAALYAVCRRERTSHMVYDFAEVA 142
Query: 74 NINVYELGAVYLQL-CQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDI 131
N Y++ + Y+QL C+ + L +DPS +H+F ++L L V A +
Sbjct: 143 GENPYDILS-YMQLICETTHTD-----LPVIDPSCMVHRFAEQLNLGHQTAAVVICALKV 196
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 170
L +M+ DWI GR+P G+C AAL V+ + S ++
Sbjct: 197 LRAMRDDWIACGRRPMGVCVAALLVACYMFNIPRSPDEV 235
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 136 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIGRSFR- 194
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ ++ KF D L G ++K A +IL + IT+G
Sbjct: 195 -----FIARNLNLTPKKLFVKPTDYVTKFADEL--GLSEKTRRRAVEILEMAYKLGITSG 247
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 248 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 292
>gi|1729909|sp|P50387.1|TF2B_SULSH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|836952|gb|AAA81380.1| transcription factor TFIIB homolog [Sulfolobus shibatae]
Length = 309
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 94/188 (50%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+
Sbjct: 120 LAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 178 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ +V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 231 SGRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 290
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 291 VRNRYKEL 298
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E + ++ LY ACR + P L + + + E+G Y + +
Sbjct: 142 LYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSYRFMAR 201
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 149
L + L+ P ++ +F D L G + K A++IL + IT+G+ P+GL
Sbjct: 202 GLGLN-----LRPTSPIDYVDRFGDAL--GVSSKTKQRAKEILQEAIKRGITSGKGPTGL 254
Query: 150 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 255 AAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E + ++ LY ACR + P L + + + E+G Y + +
Sbjct: 142 LYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARVSKVTKKEIGRSYRFMAR 201
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 149
L + L+ P ++ +F D L G + K A++IL + IT+G+ P+GL
Sbjct: 202 GLGLN-----LRPTSPIDYVDRFGDAL--GVSSKTKQRAKEILQEAIKRGITSGKGPTGL 254
Query: 150 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 255 AAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|169599398|ref|XP_001793122.1| hypothetical protein SNOG_02518 [Phaeosphaeria nodorum SN15]
gi|160704598|gb|EAT90730.2| hypothetical protein SNOG_02518 [Phaeosphaeria nodorum SN15]
Length = 348
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 56 ACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL-----KQVDPSIFLH 110
A RQ +L+D + + +NV+ LG Y + L D + ++ ++++P +
Sbjct: 3 ARRQTEITLMLMDLAEKIQVNVWALGDTYKSFLKKLGENDPAQLVGNTAVQEIEP--LML 60
Query: 111 KFTDRLLPGGNK-KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 169
K+ +L G + +V A IL MKRDW+ GR+P+GLCGA + ++A + + + +
Sbjct: 61 KYCRKLEFGDDSFRVAADACKILKRMKRDWMVQGRQPAGLCGACIILAARMNNFRRTVRE 120
Query: 170 IVKIVHICEATLMKRLIEFENTDSGSLTIEDF 201
+V +V + ++T+ RL E++ T S LTI F
Sbjct: 121 VVYVVKVADSTINSRLYEYKQTPSSVLTINQF 152
>gi|47216762|emb|CAG03766.1| unnamed protein product [Tetraodon nigroviridis]
Length = 514
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 158/398 (39%), Gaps = 126/398 (31%)
Query: 153 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM---------- 202
AL V+A H + + +IV IV +CE TL KRL EF +T + LTIE+FM
Sbjct: 76 ALLVAARMHDFRRTTKEIVGIVKVCEQTLRKRLTEFGDTPTSQLTIEEFMKVDLDQECDP 135
Query: 203 ---------ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKD-------TGKP------- 239
R ++LH ++A + P S + +C ++D T +P
Sbjct: 136 PCFTSGLQKKRIQQLHPKLSACVHAASPSSS---DEICSYQDEIDSELQTSRPKLRGVYA 192
Query: 240 -FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPFMSR 298
+A G C+S E+ +G E E ++A A+ F ++ + +
Sbjct: 193 AYARGDCKSLGEDSACKPDGSE-------------EDDLQAVAK---YFGKDLEELTLEA 236
Query: 299 VDKVQSPEPESI--------GVPKNCTTQTASNEGEGDHTKT---PGVDATTE-----AS 342
+ K++ P P+ VP+ AS G T G + E +S
Sbjct: 237 LIKLEQPRPQEEEEEEEEEDAVPRRKAPSLASILGPMPSAATLDCRGDEKEKEKENGGSS 296
Query: 343 DGSD-NFSDIDDFEVD-------------------------GYLHNEEEKHYKKIIWEEM 376
DG + + S IDD E++ YL +E E K +W
Sbjct: 297 DGGELDLSGIDDQEIELVRPRRRSRPQALLAVPLTLSSACLQYLLSEHEVKVKTALWMAE 356
Query: 377 NREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAA 436
N +YL+EQ KEA A K GL K++KR
Sbjct: 357 NSDYLKEQREKEAKIAKEKEL----------GLY-------------------KEKKRRG 387
Query: 437 EAKNSGP--AQTALEATRRMLTKKRLSSKINYDVLEKL 472
++ P A +A EA +ML +K++SSKINYDVL+ L
Sbjct: 388 PSRKRPPIRAGSADEAIGKMLEQKKISSKINYDVLKDL 425
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY ACR
Sbjct: 120 QAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTET 177
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D NI ++ Y L + L + + VDP + + + G ++
Sbjct: 178 PRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPIKCISRIASK--AGLSE 230
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A IL + + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+
Sbjct: 231 KTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIR 290
Query: 183 KR 184
R
Sbjct: 291 NR 292
>gi|384433900|ref|YP_005643258.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
gi|261602054|gb|ACX91657.1| Transcription factor TFIIB cyclin-related protein [Sulfolobus
solfataricus 98/2]
Length = 306
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+
Sbjct: 117 LAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 174
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 175 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GL 227
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 228 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 287
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 288 VRNRYKEL 295
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + + ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEIGRSFR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ ++ KF D L G ++KV A ++L +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPTDYVSKFADEL--GLSEKVRRRAIELLEEAYEKGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY++ + G + ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKEL 289
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + + ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEIGRSFR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ ++ KF D L G ++KV A ++L +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPTDYVSKFADEL--GLSEKVRRRAIELLEEAYEKGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY++ + G + ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKEL 289
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY ACR
Sbjct: 120 QAFSELDRLKDKLAVG--DSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTET 177
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D NI ++ Y L + L + + VDP + + + G ++
Sbjct: 178 PRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK--AGLSE 230
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+
Sbjct: 231 KTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIR 290
Query: 183 KR 184
R
Sbjct: 291 NR 292
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY ACR
Sbjct: 120 QAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTET 177
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D NI ++ Y L + L + + VDP + + + G ++
Sbjct: 178 PRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK--AGLSE 230
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+
Sbjct: 231 KTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGESKTQRDVAEAAGVTEVTIR 290
Query: 183 KR 184
R
Sbjct: 291 NR 292
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY ACR
Sbjct: 120 QAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTET 177
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D + NI ++ Y L + L + + VDP + + + G ++
Sbjct: 178 PRTLKDIGHASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK--AGLSE 230
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+
Sbjct: 231 KTKRAATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIR 290
Query: 183 KR 184
R
Sbjct: 291 NR 292
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY ACR
Sbjct: 120 QAFSELDRLKDKLAVG--DAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTET 177
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D NI ++ Y L + L + + VDP + + + G ++
Sbjct: 178 PRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPIKCISRIASK--AGLSE 230
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A IL + + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+
Sbjct: 231 KTKRKATKILQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIR 290
Query: 183 KR 184
R
Sbjct: 291 NR 292
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY ACR
Sbjct: 120 QAFSELDRLKDKLAVG--DSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTET 177
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D NI ++ Y L + L + + VDP + + + G ++
Sbjct: 178 PRTLKDIGQASNIKRKDIARCYRLLLRELNLK-----MPVVDPVKCISRIASK--AGLSE 230
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+
Sbjct: 231 KTKRKATKILQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIR 290
Query: 183 KR 184
R
Sbjct: 291 NR 292
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + + ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSKVDKKEIGRSFR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V PS +++KF D L G ++KV A ++L +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPSDYVNKFADEL--GLSEKVRKRAIELLEEAYNRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY++ L + ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIAGLMEEERRTQREVAEVARVTEVTVRNRYKEL 289
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V SCLY+ACRQ+S P
Sbjct: 136 ALSEIDRMASALGVPRS--VREVASVVYRRALNEDLIRGRSIEGVSTSCLYVACRQESIP 193
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L + +K VDP ++ +F L +++
Sbjct: 194 RSLEEVADVSRVEKKEIGRTYRYIAQELSLE-----MKPVDPKEYVPRFCSAL--DSSEE 246
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V AR+I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 247 VQAKAREIIDTTAEEGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 306
Query: 184 RLIE 187
R E
Sbjct: 307 RYQE 310
>gi|227827925|ref|YP_002829705.1| transcription initiation factor IIB [Sulfolobus islandicus M.14.25]
gi|227830647|ref|YP_002832427.1| transcription initiation factor IIB [Sulfolobus islandicus
L.S.2.15]
gi|229579555|ref|YP_002837954.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.G.57.14]
gi|229585192|ref|YP_002843694.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.27]
gi|238620152|ref|YP_002914978.1| transcription initiation factor IIB [Sulfolobus islandicus M.16.4]
gi|284998175|ref|YP_003419942.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385773629|ref|YP_005646195.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
gi|385776265|ref|YP_005648833.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|227457095|gb|ACP35782.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
L.S.2.15]
gi|227459721|gb|ACP38407.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.14.25]
gi|228010270|gb|ACP46032.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.G.57.14]
gi|228020242|gb|ACP55649.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.27]
gi|238381222|gb|ACR42310.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
M.16.4]
gi|284446070|gb|ADB87572.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|323475013|gb|ADX85619.1| transcription initiation factor TFIIB, cyclin-related protein
[Sulfolobus islandicus REY15A]
gi|323477743|gb|ADX82981.1| transcription factor TFIIB [Sulfolobus islandicus HVE10/4]
Length = 309
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+
Sbjct: 120 LAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 178 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 231 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 290
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 291 VRNRYKEL 298
>gi|15897377|ref|NP_341982.1| transcription initiation factor IIB [Sulfolobus solfataricus P2]
gi|284173282|ref|ZP_06387251.1| transcription initiation factor IIB [Sulfolobus solfataricus 98/2]
gi|14195237|sp|P58111.1|TF2B1_SULSO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|13813602|gb|AAK40772.1| Transcription initiation factor IIB (TFIIB) homolog (TFB-1)
[Sulfolobus solfataricus P2]
Length = 309
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+
Sbjct: 120 LAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 178 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 231 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 290
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 291 VRNRYKEL 298
>gi|167043157|gb|ABZ07866.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW141J13]
Length = 305
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 17/188 (9%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++AF+++ ++K+ L++ SD +V A Y A+ + KGR + AS LY ACR+
Sbjct: 121 FKQAFNELYRLKDKLSL--SDSVVEKAAYIYRKAINKKLVKGRTISSLMASALYAACREV 178
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRL 116
P L D S+ NI +L + Y L L + D + + ++ I + + T RL
Sbjct: 179 GTPRTLKDISDTTNIKKRDLASNYRLLVNELDLKIPVVDSVHNVARIASKIGISEKTKRL 238
Query: 117 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 176
A ++L + +T G+ P L ALY+S G +S+ D+ + +
Sbjct: 239 -----------ATELLRKAEESELTAGKNPMSLAATALYISCRKTGENYSQRDLAEAASV 287
Query: 177 CEATLMKR 184
E T+ R
Sbjct: 288 TEVTIRNR 295
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISRVDKKEIGRSF-- 190
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A IL +T+G
Sbjct: 191 ----RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIAILEEAYEKGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY++ L K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L +G D ++ A Y A+ + +GR + AS LY ACR
Sbjct: 121 QAFSELDRLKDKLAVG--DTVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTET 178
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D +N NI ++ Y L + L + + V+P + + + G ++
Sbjct: 179 PRTLKDIANASNIKRKDIARCYRLLLRELGLK-----MPVVNPVNCISRIAS--IAGLSE 231
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A IL + + I+ G+ P GL AALYV+ +T+G ++ D+ + + E T+
Sbjct: 232 KTKREASKILKNAEEVKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIR 291
Query: 183 KR 184
R
Sbjct: 292 NR 293
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 7/167 (4%)
Query: 22 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 81
+ VA Y AV + +GR E + ++ LY ACR + P L + + + E+G
Sbjct: 134 RVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIG 193
Query: 82 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWIT 141
Y L + L + L+ P ++ +F D L +++ A++IL + IT
Sbjct: 194 RSYRFLARGLGLN-----LRPTSPIEYIDRFGDSL--DVSQRTKKRAKEILQEAIKRGIT 246
Query: 142 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+G+ P+GL AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 247 SGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y A+ + +GR E V A+C+Y ACR P L + ++ ++ E+ +
Sbjct: 136 AARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEIARSFR- 194
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A ++L +T+G
Sbjct: 195 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIELLEEAYNRGLTSG 247
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 248 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 292
>gi|229581781|ref|YP_002840180.1| transcription initiation factor IIB [Sulfolobus islandicus
Y.N.15.51]
gi|228012497|gb|ACP48258.1| Transcription factor TFIIB cyclin-related [Sulfolobus islandicus
Y.N.15.51]
Length = 309
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+
Sbjct: 120 LAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 178 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 231 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 290
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 291 VRNRYKEV 298
>gi|291236296|ref|XP_002738076.1| PREDICTED: transcription initiation factor IIIB-like [Saccoglossus
kowalevskii]
Length = 205
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A F+ +AV++ T+GR+T V ++CLYL CR + P +L+DFS+ L +NVY LG
Sbjct: 106 IDTAYNFFKMAVSKRLTRGRKTSHVVSACLYLVCRTEGTPHMLLDFSDILQVNVYVLGKT 165
Query: 84 YLQLCQVLYI 93
YL+L L+I
Sbjct: 166 YLKLSTELHI 175
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 7/167 (4%)
Query: 22 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 81
+ VA Y AV + +GR E + ++ LY ACR + P L + + + E+G
Sbjct: 134 RVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIG 193
Query: 82 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWIT 141
Y L + L + L+ P ++ +F D L K A++IL + IT
Sbjct: 194 RSYRFLARGLNLN-----LRPTSPIEYVDRFGDALNVSARTK--KRAKEILHEAIKRGIT 246
Query: 142 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+G+ P+GL AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 247 SGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 293
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 7/167 (4%)
Query: 22 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 81
+ VA Y AV + +GR E + ++ LY ACR + P L + + + E+G
Sbjct: 129 RVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAVSKVTKKEIG 188
Query: 82 AVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWIT 141
Y L + L + L+ P ++ +F D L K A++IL + IT
Sbjct: 189 RSYRFLARGLNLN-----LRPTSPIEYVDRFGDALNVSARTK--KRAKEILREAIKRGIT 241
Query: 142 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+G+ P+GL AALYV++L G K ++ ++ ++ H+ E T+ R E
Sbjct: 242 SGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKEL 288
>gi|68164349|gb|AAY87166.1| hypothetical transcription initiation factor IIB-like protein
variant #2 [Sulfolobus islandicus]
Length = 187
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 3 KAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+A +++ ++ N LN+ +S DE A Y AV + +GR E V A+ +Y ACR+
Sbjct: 2 QAMNELERIGNLLNLPKSVKDE----AALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 57
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 58 KLARTLDEIAQYTKANRKEVAXCYRLLLRELDVSVPVS-----DPKDYVTRIAN--LLGL 110
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 111 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 170
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 171 VRNRYKEL 178
>gi|296242903|ref|YP_003650390.1| transcription initiation factor IIB [Thermosphaera aggregans DSM
11486]
gi|296095487|gb|ADG91438.1| Transcription initiation factor IIB (TFIIB) [Thermosphaera
aggregans DSM 11486]
Length = 306
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ + LN+ + A R Y AV + +GR E V A+ +Y+ACR+
Sbjct: 117 LAQAMNELERLGDLLNL--PSHVKEEAARIYREAVEKGLVRGRSIESVIAAAVYVACREL 174
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + I ++ Y L + L I + DP ++ + L LPG
Sbjct: 175 KVPRSLDEVSRHTRIGRKDIARCYRLLLRELDIK-----VGTTDPVDYVPRIVHALGLPG 229
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V A ++L + +T G+ P+GL AA+YV++L G K ++ ++ + + E
Sbjct: 230 ---TVVKKAVELLNVAREHGVTGGKDPAGLAAAAVYVASLELGEKRTQKEVAHVAGVTEV 286
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 287 TVRNRYKEL 295
>gi|68164351|gb|AAY87167.1| hypothetical transcription initiation factor IIB-like protein
variant #3 [Sulfolobus islandicus]
gi|68164353|gb|AAY87168.1| hypothetical transcription initiation factor IIB-like protein
variant #1 [Sulfolobus islandicus]
Length = 187
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 3 KAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+A +++ ++ N LN+ +S DE A Y AV + +GR E V A+ +Y ACR+
Sbjct: 2 QAMNELERIGNLLNLPKSVKDE----AALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 57
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 58 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVSVPVS-----DPKDYVTRIAN--LLGL 110
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 111 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 170
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 171 VRNRYKEL 178
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 17/188 (9%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++AF+++ ++K+ L + SD +V A Y A+ + KGR + AS LY ACR+
Sbjct: 118 FKQAFNELYRLKDKLTL--SDSVVEKAAYIYRKAINKKLVKGRTISALMASALYAACREV 175
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRL 116
P L D S+ NI +L A Y L L + + + + ++ I + + T R+
Sbjct: 176 GTPRTLKDISDTTNIKKRDLAANYRLLVNELDLKIPVVNSVHNVARIASKIGISEKTKRI 235
Query: 117 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 176
A +IL + I+ G+ P L ALY+S G +S+ D+ + +
Sbjct: 236 -----------ATEILRKAEESEISAGKNPMSLAATALYISCRKTGENYSQRDLAEAASV 284
Query: 177 CEATLMKR 184
E T+ R
Sbjct: 285 TEVTIRNR 292
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADMAKVDKKEIGRSFRF 192
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 146
+ + L + + +K P+ +++KF D L G +++ A ++L + +T+G+ P
Sbjct: 193 IARNLNLTPKKLFVK---PTDYVNKFADEL--GLSERTRRRAIELLDQVYNMGLTSGKSP 247
Query: 147 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+GL AALY++ L G K ++ ++ + + E T+ R E
Sbjct: 248 AGLVAAALYIAGLLEGEKRTQREVAEAARVTEVTVRNRYKEM 289
>gi|414587926|tpg|DAA38497.1| TPA: hypothetical protein ZEAMMB73_605143 [Zea mays]
Length = 316
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 24/119 (20%)
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 414
EVDGY HNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 67 EVDGYFHNEEETQYKKIIWEEMNKEYLEEQAAKEALA----------------------- 103
Query: 415 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
A AA + +K++KR + K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 104 -AELAARGIDPEAGKKKRKRNEDMKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 161
>gi|414884212|tpg|DAA60226.1| TPA: hypothetical protein ZEAMMB73_105752 [Zea mays]
Length = 319
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 24/119 (20%)
Query: 355 EVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQE 414
EVDGY HNEEE YKKIIWEEMN+EYLEEQAAKEA A
Sbjct: 67 EVDGYFHNEEETQYKKIIWEEMNKEYLEEQAAKEALA----------------------- 103
Query: 415 LAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLF 473
A AA + +K++KR + K+S PA+T EAT ML +K L SKIN +++L+
Sbjct: 104 -AELAARGIDPEAGKKKRKRNEDMKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELY 161
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y +CR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVDKKEIGRSF-- 190
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G +++V A IL +T+G
Sbjct: 191 ----RFIARNLNLTPKKLFVKPTDYVNKFADEL--GLSERVRRRAIAILEEAYEKGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY++ L K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|355693620|gb|EHH28223.1| hypothetical protein EGK_18611 [Macaca mulatta]
gi|355778900|gb|EHH63936.1| hypothetical protein EGM_17014 [Macaca fascicularis]
Length = 59
Score = 71.2 bits (173), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KR
Sbjct: 2 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKR 59
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 94/185 (50%), Gaps = 7/185 (3%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ ++ LN+ + E A R Y AV + +G+ E V A+C+Y ACR P
Sbjct: 112 ALSELDRLGARLNLPKHVE--EEAARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIP 169
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ ++ E+G + + + L + + +K P+ +++KF D L G +++
Sbjct: 170 RTLDEIADIAKVDKKEIGRSFRFIARNLNLTPKKLFVK---PTDYVNKFADEL--GLSER 224
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
A ++L +T+G+ P+GL AALY++ L G K ++ ++ ++ + E T+
Sbjct: 225 TRRRAIELLEKAYGMGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEVARVTEVTVRN 284
Query: 184 RLIEF 188
R E
Sbjct: 285 RYKEM 289
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ +M + L+I +++ A Y AV +N +GR E V A +Y ACR
Sbjct: 122 LSQALQELERMTSNLSI--PNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRIT 179
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ P L + ++ + E+G Y + + L + N++ P ++++F +L
Sbjct: 180 NVPRTLDEIASVTRVKKKEIGRTYRIMARYLKL----NIMPS-KPEDYVNRFCSKLRLSM 234
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ A +IL + +T+G+ P+G+ AA+Y+++L G + ++ I ++ + E T
Sbjct: 235 EAR--KRAEEILKMAVDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVT 292
Query: 181 LMKRLIEFENTDSGSLTIED 200
+ R E T+ +LTIE+
Sbjct: 293 IRNRYKEL--TEKLNLTIEE 310
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 5/162 (3%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y +CR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVDKKEIGRSFRF 192
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 146
+ + L + + +K P+ +++KF D L G +++V A IL +T+G+ P
Sbjct: 193 IARNLNLTPKKLFVK---PTDYVNKFADEL--GMSERVRRRAIAILEEAYDRGLTSGKSP 247
Query: 147 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+GL AALY++ L K ++ ++ ++ + E T+ R E
Sbjct: 248 AGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKEL 289
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ +M + L+I D++ A Y AV +N +GR E V A LY ACR
Sbjct: 124 LSQALQELERMASNLSI--PDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRIT 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRLL 117
+ P L + ++ + E+G Y + + L + N++ PS ++ +F +L
Sbjct: 182 NVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCSKLK 233
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+ + + A +IL S + +T+G+ P+G+ AA+Y+++L G + ++ + ++ +
Sbjct: 234 LSMDTR--NKALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVT 291
Query: 178 EATLMKRLIEFENTDSGSLTIE 199
E T+ R E T+ L +E
Sbjct: 292 EVTIRNRYKEL--TEKLQLNVE 311
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 3 KAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+A +++ ++ + L I ++ DE + V Y + + +GR E + A+CL++ACR+
Sbjct: 149 QAMNELSRISSQLGIPKACVDEAMGV----YEQVLTKGLVRGRSVEAIVAACLHMACRKI 204
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + S Y + E+ + IA E V L DP +++ + ++L
Sbjct: 205 GMPRSLDEISQYTRASRKEVARCFR------LIARELGVRLPLSDPKLYVPRIVEQLKLS 258
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
G ++ A +IL KR +T G+ P+GL AA+Y+++L G ++ ++ + E
Sbjct: 259 G--EILKEALNILEQAKRKGLTAGKDPAGLAAAAVYIASLLRGEVRTQKEVAMAAQVTEV 316
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 317 TVRNRYKEL 325
>gi|170583367|ref|XP_001896547.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
gi|158596222|gb|EDP34611.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
Length = 769
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
V+ A F+ + V+RNFT+GR V A+CLY+ CR ++ LL+DFS+ +NV++LG
Sbjct: 104 VNTAFNFFKMCVSRNFTRGRVRSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRT 163
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + L I L DP +++ +F L G +K
Sbjct: 164 LNFLTRSLKIN-----LPTTDPCMYILRFAVSLDFGAKQK 198
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 29/135 (21%)
Query: 342 SDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEAS 401
S+G + IDD E++ Y+ +EE K W ++N E+L+E + +
Sbjct: 330 SNGELDLEGIDDDEINTYILTKEEVDLKTRFWMKLNGEHLKEMERRRREREEEER----- 384
Query: 402 YKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGP--AQTALEATRRMLTKKR 459
K K+++R + P A TA EA +++ +K+
Sbjct: 385 ----------------------EKDNSSKKRRRTNGIRKKEPIVAATAQEAMEKVIHEKK 422
Query: 460 LSSKINYDVLEKLFD 474
LS+KINYD+L+++ D
Sbjct: 423 LSNKINYDILKEIED 437
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 9/190 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ N L++ + + A Y AV + +GR E V A+ +Y+ACR K
Sbjct: 126 LAQAMNELDRLSNQLHLNRA--VREEAAVIYRKAVEKGLVRGRSIESVIAASVYVACRLK 183
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S + N E+ Y L + L + + DP ++ + L G
Sbjct: 184 KLPRTLDEISLHTRANRKEIARCYRLLVKELQLK-----VPIADPIDYIPRMGSLLDLSG 238
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K + A I+ K+ +T G+ P+GL AA+YV+ L K ++ +I I + E T
Sbjct: 239 --KAMNIAARIVKIAKQKALTAGKDPAGLAAAAIYVATLLENEKRTQKEIANIAGVTEVT 296
Query: 181 LMKRLIEFEN 190
+ R E N
Sbjct: 297 VRNRYKELVN 306
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 101/200 (50%), Gaps = 11/200 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ +M + L+I +++ + Y AV +N +GR E V A +Y ACR
Sbjct: 123 LSQALQELERMASNLSI--PNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRIT 180
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ P L + ++ + E+G Y + + L + N+L P ++++F +L
Sbjct: 181 NVPRTLDEIASVTRVKKKEIGRTYRIMARYLKL----NILPS-KPDDYVNRFCSKLRLSM 235
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ A +IL + +T+G+ P+G+ AA+Y+++L G + ++ I ++ + E T
Sbjct: 236 EAR--KRAEEILKMAIDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVT 293
Query: 181 LMKRLIEFENTDSGSLTIED 200
+ R E T+ +LTIE+
Sbjct: 294 IRNRYKEL--TEKLNLTIEE 311
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A +++ ++ + L I ++ V A Y + + +GR E + A+CL++ACR+
Sbjct: 149 QAMNELSRISSQLGIPKA--CVDEAMGIYEQVLTKGLVRGRSVEAIVAACLHMACRKIGM 206
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGN 121
P L + S Y + E+ + IA E V L DP +++ + ++L G
Sbjct: 207 PRSLDEISQYTRASRKEVARCFR------LIARELGVRLPLSDPKLYVPRIVEQLKLSG- 259
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
++ A +IL KR +T G+ P+GL AA+Y+++L G ++ ++ + E T+
Sbjct: 260 -EILKEALNILEQAKRKGLTAGKDPAGLAAAAVYIASLLKGEVRTQKEVAMAAQVTEVTV 318
Query: 182 MKRLIEF 188
R E
Sbjct: 319 RNRYKEL 325
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
+ E+G Y L + L I L P ++ +F L G + +V A DI
Sbjct: 221 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIDI 273
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 274 IEQAMAKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 333
Query: 191 TDSG 194
D G
Sbjct: 334 LDMG 337
>gi|16120252|ref|NP_395840.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169237618|ref|YP_001690821.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195241|sp|Q9HHK5.1|TF2B3_HALSA RecName: Full=Transcription initiation factor IIB 3; Short=TFIIB 3
gi|10584386|gb|AAG20975.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167728395|emb|CAP15204.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 317
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + I+ E+G Y + Q L + ++ DP +L +F L +++
Sbjct: 192 RTLEEVTEVARIDQKEIGRTYRYVAQELSLE-----IQPTDPKEYLPRFASDLEL--SEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V AR+I+ + + +G+ PSG AA+Y ++L K ++ ++ + ++ E T+
Sbjct: 245 VIAKAREIIDTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>gi|118431874|ref|NP_148613.2| transcription initiation factor IIB [Aeropyrum pernix K1]
gi|152031706|sp|Q9Y942.2|TF2B_AERPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116063196|dbj|BAA81458.2| transcription initiation factor IIB [Aeropyrum pernix K1]
Length = 322
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
A +G + +V A + Y A+ + T+GR E + A+ LY A R P L D +
Sbjct: 131 ASRMGMPEIVVEDASKIYREAMEKGLTRGRSIESIVAASLYAASRIHGLPHSLTDIIKAM 190
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 133
NV + L + D + + P F++ L G + V A I+
Sbjct: 191 KGNVDAETRRDVARSYRLLVRDLNIKIPVRKPENFVYTIISAL--GLPEHVAIEAIKIID 248
Query: 134 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
++ +T G+ P GL GAA+Y++AL HG++ ++ +I +V + E T+ R E
Sbjct: 249 LSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEIAHVVGVTEVTIRNRYKEI 303
>gi|429966286|gb|ELA48283.1| hypothetical protein VCUG_00324, partial [Vavraia culicis
'floridensis']
Length = 165
Score = 69.7 bits (169), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 10 QMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLID 68
Q+KN ++G SDE+ A R+Y +++ N T+GR ++C+Y+ CRQ+ P LLID
Sbjct: 81 QIKNICASLGLSDEVAQSAHRWYKLSLQGNLTRGRNILYTLSACIYIVCRQEKTPHLLID 140
Query: 69 FSNYLNINVYELGAVYLQLCQVLYI 93
F++ L+++V+++G +++++ L +
Sbjct: 141 FAHLLDLDVFKIGNIFVRIVVFLNV 165
>gi|448294148|ref|ZP_21484234.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|445587483|gb|ELY41742.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 298
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++AF ++R+M +AL G D I A Y AV + GR E + + LY A RQ
Sbjct: 109 LKQAFGEIRRMASAL--GLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQH 166
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
S P L + + + Y L + L + ++ VDP ++ +F L
Sbjct: 167 STPRTLAELETVSRVKRLRIQRAYRYLSRELGLR-----MEPVDPLQYVPQFASEL--NV 219
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + ARD+L + K + +GR P+GL A+Y + + ++ + + H+ T
Sbjct: 220 SDEATRRARDLLTTAKAQGVHSGRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMT 279
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 280 IRIRYQEL 287
>gi|393796305|ref|ZP_10379669.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 287
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 12/195 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ ++K+ L + SD +V A Y A+ + +GR + AS LY ACR
Sbjct: 101 LRQALSELTRLKDKLAV--SDAVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDT 158
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D S+ NI ++ Y L Q L + + VDP + + +L G
Sbjct: 159 ETPRTLKDVSDAGNIKKKDIARCYRILHQELELK-----MPVVDPIQCIARIASKL--GI 211
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A +L + + + G+ P GL AALY+S +++ ++ DI + + E T
Sbjct: 212 SEKTKRYAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRDIAEAASVTEVT 271
Query: 181 LMKR---LIEFENTD 192
+ R L +NTD
Sbjct: 272 IRNRYKGLRMDQNTD 286
>gi|300713081|ref|YP_003738893.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
gi|299126765|gb|ADJ17102.1| transcription initiation factor IIB [Halalkalicoccus jeotgali B3]
Length = 345
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++AF ++R+M +AL G D I A Y AV + GR E + + LY A RQ
Sbjct: 156 LKQAFGEIRRMASAL--GLPDPIRETAGVLYRRAVEDDLLPGRSIEGMATASLYTAARQH 213
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
S P L + + + Y L + L + ++ VDP ++ +F L
Sbjct: 214 STPRTLAELETVSRVKRLRIQRAYRYLSRELGLR-----MEPVDPLQYVPQFASEL--NV 266
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + ARD+L + K + +GR P+GL A+Y + + ++ + + H+ T
Sbjct: 267 SDEATRRARDLLTTAKAQGVHSGRSPAGLAAGAIYAATRLTNEQVTQETVRAVTHVSRMT 326
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 327 IRIRYQEL 334
>gi|329764659|ref|ZP_08256266.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329138857|gb|EGG43086.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 287
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 12/195 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ ++K+ L + SD +V A Y A+ + +GR + AS LY ACR
Sbjct: 101 LRQALSELTRLKDKLAV--SDAVVEKAAYIYRKALDKGLVRGRSISALIASALYAACRDT 158
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D S+ NI ++ Y L Q L + + VDP + + +L G
Sbjct: 159 ETPRTLKDVSDAGNIKKKDIARCYRILHQELELK-----MPVVDPIQCIARIASKL--GI 211
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A +L + + + G+ P GL AALY+S +++ ++ DI + + E T
Sbjct: 212 SEKTKRYAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVSNSENMTQRDIAEAASVTEVT 271
Query: 181 LMKR---LIEFENTD 192
+ R L +NTD
Sbjct: 272 IRNRYKGLRMDQNTD 286
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL I S + VA Y A++ + +GR E V CLY ACRQ+
Sbjct: 138 LQSALSEIDRMSSALGIPRS--VREVASVVYRRALSEDLIRGRSIEGVATGCLYAACRQE 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+G Y + Q L + LK VDP ++ +F L
Sbjct: 196 GIPRSLEEVAEVSRVERKEIGRTYRYVAQELSLE-----LKPVDPQEYVPRFCSEL--DL 248
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V R+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T
Sbjct: 249 SEEVTAKTREIIQVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVT 308
Query: 181 LMKRLIE 187
+ R E
Sbjct: 309 IRNRYQE 315
>gi|242018725|ref|XP_002429824.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
gi|212514842|gb|EEB17086.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
Length = 184
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN-INVYELGA 82
+ +A F+ +A++R+ T+GR+T V A+C+Y+ CR + +LIDF + L+ + VYELG
Sbjct: 107 IEIAYNFFKMALSRHLTRGRKTGNVVAACVYMTCRMEGTAHMLIDFCDVLDTVGVYELGR 166
Query: 83 VYLQLCQVLYI 93
YL+L Q L I
Sbjct: 167 TYLKLSQALCI 177
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G E+ A Y A++ + GR E V S LY A RQ
Sbjct: 139 LKQALGEIERMSSAL--GLPKEVRETASVIYRRALSEDLLPGRSIEGVATSALYAAARQM 196
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + + +N I+ E Y + + L + + DP+ ++ +F L LP
Sbjct: 197 QTPRSIDEVANVSRIDAMEFKRTYRYIVRELGLE-----VAPADPASYVPRFASELDLP- 250
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V AR++L + ++D +T+G+ P GL AA+Y ++L K ++S + + + E
Sbjct: 251 --DEVERRARELLDNAQKDGVTSGKSPVGLAAAAIYAASLLTNHKVTQSQVSDVTDVSEV 308
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 309 TIRNRYQEL 317
>gi|257052965|ref|YP_003130798.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691728|gb|ACV12065.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 334
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E + + LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L +F + + Y L + L + + DP+ +L +FT L
Sbjct: 196 GTPRSLDEFEPISRVRRQKYARAYRYLARQLELG-----IAPADPAEYLPRFTSDLDLDD 250
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + ARD+L+ +K+ +G+ P+GL A+Y + L G + ++ ++ + + E T
Sbjct: 251 DLER--QARDLLSELKKTGEHSGKNPTGLAAGAIYAAGLLTGDRITQGEVAETADVSEVT 308
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 309 IRDRYSEL 316
>gi|389860462|ref|YP_006362701.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
gi|388525365|gb|AFK50563.1| transcription initiation factor IIB [Thermogladius cellulolyticus
1633]
Length = 316
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ LN+ + A R Y +AV + +GR E V A+ +Y+ACR+
Sbjct: 126 LAQALNELERIAELLNL--PTHVREEAARIYRMAVEKGLVRGRSIESVIAAAVYVACREA 183
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + Y I E+ Y L + L I + VDP F+ + L G
Sbjct: 184 RVPRSLDEITKYTRIPRKEIARCYRLLLRELGIK-----VTAVDPIDFIPRIAHAL--GL 236
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ ++ A +IL ++ +T G+ P+GL AA+Y++A+T G K ++ ++ + + E T
Sbjct: 237 SGEIIKNATEILNKVRNKGVTAGKDPAGLAAAAVYIAAITAGEKRTQKEVAHVAGVTEVT 296
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 297 VRNRYKEI 304
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACRQ P L + +
Sbjct: 85 RDSSRLGLPRSVREAASVIYRSAVENKLIRGRSIEGVVAASLYAACRQCKVPRTLDEIAE 144
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y L + L+I L P ++ +F L G + +V + +I
Sbjct: 145 VSRVSKKEVGRTYRFLTRELHIK-----LPPTSPVDYVPRFASEL--GLSGEVQSRSIEI 197
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ +T+GR P+G+ AALY++++ G + ++ D+ + + E T+ R E E
Sbjct: 198 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADVAGVTEVTIRNRYKELTEQ 257
Query: 191 TDSG 194
++G
Sbjct: 258 LETG 261
>gi|170043428|ref|XP_001849389.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
gi|167866785|gb|EDS30168.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
Length = 218
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KA + + + L++ ++ + + F+ +A+ R+ T+GRR + A+C+Y+ CR +
Sbjct: 86 LRKARHGITHLCHQLHL--NNHCIETSCNFFKMALIRHLTRGRRNTHIYAACVYITCRTE 143
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 93
LLID S+ L I YELG YL+L Q L I
Sbjct: 144 GTSHLLIDISDVLQICCYELGRTYLKLSQALCI 176
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 152 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 211
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 212 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 264
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 265 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 324
Query: 191 TDSG 194
D G
Sbjct: 325 LDMG 328
>gi|399578260|ref|ZP_10772009.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236752|gb|EJN57687.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 389
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 11/188 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A +M +M +AL + +S VA Y A+ + +GR E V CLY ACRQ+
Sbjct: 204 LQFALSEMDRMASALGVPKSTR--EVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQE 261
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ + E+G Y Y+A E ++ ++ VDP ++ +F L G
Sbjct: 262 GIPRSLDEVADVSRVPYQEIGRTY------RYVAKELSLEMRPVDPKEYVPRFASEL--G 313
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++V A D++ + + + +G+ P+G AALY + L K ++ ++ + + E
Sbjct: 314 VPEEVEQKANDVIDTAAEEGLLSGKSPTGFAAAALYAAGLLCNEKRTQKEVADVAQVTEV 373
Query: 180 TLMKRLIE 187
T+ R E
Sbjct: 374 TIRNRYQE 381
>gi|357622230|gb|EHJ73794.1| TFIIB-related factor [Danaus plexippus]
Length = 195
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KA + + + L + + + + +A F+ +A+AR+ T GR++ QA+C+Y+ CR +
Sbjct: 86 LRKAREGITALCQQLRLNQ--QCIDIACNFFKMALARHLTIGRQSALTQAACVYITCRTE 143
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 93
P LLID S+ L I+ Y+LG Y +L + L I
Sbjct: 144 GTPHLLIDISDALQIDCYQLGRTYFKLSKALCI 176
>gi|329766221|ref|ZP_08257779.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|393795806|ref|ZP_10379170.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329137280|gb|EGG41558.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 304
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 17/186 (9%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L I SD ++ A Y A+ + +GR + AS LY ACR
Sbjct: 122 QAFSELNRLKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTET 179
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLP 118
P L D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 180 PRNLKDVEQAANIKRKDIARCYRLLIKELDLKMPVTDSIQCVARIASRIGIAEKTKRY-- 237
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
A ++L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E
Sbjct: 238 ---------AVNVLKQAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTE 288
Query: 179 ATLMKR 184
T+ R
Sbjct: 289 VTIRNR 294
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 161 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 220
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 221 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 273
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 274 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 333
Query: 191 TDSG 194
D G
Sbjct: 334 LDMG 337
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 7/187 (3%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 146 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 205
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
+ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 206 VSRVGKKEVGRTYRFLTRELNIK-----LPPTSPVDYIPRFASELNLSG--EVQSKAIEI 258
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191
+ + +T+G+ P+G+ AALY++++ G + ++ D+ ++ + E T+ R E
Sbjct: 259 INNAMAKGLTSGKGPTGVAAAALYIASVLLGERKTQRDVAEVAGVTEVTIRNRYKELSEE 318
Query: 192 DSGSLTI 198
LTI
Sbjct: 319 IEMGLTI 325
>gi|448733008|ref|ZP_21715254.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
gi|445803341|gb|EMA53638.1| transcription initiation factor TFB [Halococcus salifodinae DSM
8989]
Length = 325
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A++ + +GR E V S LY ACR++ P
Sbjct: 142 ALSEIDRMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIP 199
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S +N E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 200 RSLEEISEVSRVNRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELTL--SEE 252
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A DI+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 253 VQSKANDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 312
Query: 184 RLIE 187
R E
Sbjct: 313 RYQE 316
>gi|167044706|gb|ABZ09376.1| putative transcription factor TFIIB repeat protein [uncultured
marine microorganism HF4000_APKG7N23]
Length = 242
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ A IG ++ A Y AV N +GR E V A+ LY ACR+
Sbjct: 54 LAQALNELNRL--ASKIGLHRQVREEAAMLYRRAVQDNLVRGRSVEGVAAAALYGACRRC 111
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 118
P L + + + E+G Y YI+ E + L+ P++++ +F L LP
Sbjct: 112 EVPRTLSEITEASRASKKEVGRTY------RYISRELKLNLQPASPAVYIIRFCRELELP 165
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
G V A +IL +T+GR P+G+ AA+Y++++ + + ++ I V + E
Sbjct: 166 G---YVESAAINILNQAIEAELTSGRGPTGVAAAAIYIASVVYDQRKTQKTIADTVGVTE 222
Query: 179 ATLMKRLIEF 188
T+ R E
Sbjct: 223 VTIRNRYKEL 232
>gi|448728119|ref|ZP_21710451.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445797553|gb|EMA48024.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A++ + +GR E V S LY ACR++ P
Sbjct: 142 ALSEIDRMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEGVATSALYAACRKEGIP 199
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S +N E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 200 RSLEEISEVSRVNRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELTL--SEE 252
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A DI+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 253 VQSKANDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 312
Query: 184 RLIE 187
R E
Sbjct: 313 RYQE 316
>gi|292654896|ref|YP_003534793.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|291372806|gb|ADE05033.1| transcription initiation factor TFB [Haloferax volcanii DS2]
Length = 326
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A++ + +GR E V S LY ACR++ P
Sbjct: 143 ALSEIDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAACRKEGIP 200
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F+ L +K+
Sbjct: 201 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKE 253
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 254 VQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRN 313
Query: 184 RLIE 187
R E
Sbjct: 314 RYQE 317
>gi|322370876|ref|ZP_08045431.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320549553|gb|EFW91212.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 319
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+A + +GR E V S LY ACRQ+ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALAEDLIRGRSIEGVATSTLYAACRQEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + ++ E+G Y + Q L + +K VDP ++ +F L G +++
Sbjct: 195 RSLEEVAEVSRVDQKEIGRTYRYISQELGLE-----MKPVDPKQYVPRFCSDL--GVSEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQSKANEIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 190
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ + +T+GR P+G+ AALY++++ G ++ D+ ++ + E T+ R E E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTEQ 303
Query: 191 TDSG 194
D G
Sbjct: 304 LDLG 307
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 99/202 (49%), Gaps = 17/202 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ +M A N+ +++ A Y AV +N +GR E V A LY ACR
Sbjct: 124 LSQALQELERM--AFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRIT 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRLL 117
+ P L + ++ + E+G Y + + L + N++ PS ++ +F +L
Sbjct: 182 NVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCSKLK 233
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+ + + A +IL + +T+G+ P+G+ AA+Y+++L G + ++ + ++ +
Sbjct: 234 LSMDTR--NKALEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVT 291
Query: 178 EATLMKRLIEFENTDSGSLTIE 199
E T+ R E T+ L +E
Sbjct: 292 EVTIRNRYKEL--TEKLKLNVE 311
>gi|162287069|ref|NP_001088063.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus laevis]
gi|52354750|gb|AAH82860.1| LOC494758 protein [Xenopus laevis]
Length = 660
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 27/132 (20%)
Query: 341 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 400
A DG + + IDD E+D Y+ NE+E K ++W + N +YL EQ KE A K
Sbjct: 434 AGDGELDLNGIDDNEIDRYILNEKEAEIKTVLWMKENADYLREQKEKEERIAKEKEL--- 490
Query: 401 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 460
G+ Q R K KR A + A TA EA +ML +K++
Sbjct: 491 -------GIYKEQ-------------RPRKPSKRRAPIQ----ASTAGEAIEKMLEQKKI 526
Query: 461 SSKINYDVLEKL 472
SSKINYDVL L
Sbjct: 527 SSKINYDVLRDL 538
>gi|409730080|ref|ZP_11271675.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|448723223|ref|ZP_21705747.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
gi|445787965|gb|EMA38691.1| transcription initiation factor IIB [Halococcus hamelinensis 100A6]
Length = 321
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y ++A + +GR E V S LY ACR++ P
Sbjct: 138 ALSEIDRMASALGVPRS--VREVASVIYRRSLAEDLIRGRSIEGVATSALYAACRKEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S +N E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 196 RSLEEISEVSRVNRKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELTL--SEE 248
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A DI+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 249 VQSKANDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 308
Query: 184 RLIE 187
R E
Sbjct: 309 RYQE 312
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 3 KAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+A ++ ++ + L + +S DE + V Y + KGR E + A+CL++ACR +
Sbjct: 149 QATHELNRIAHQLGVPKSCMDEALAV----YKQVLKSGLVKGRSVEAIIAACLHMACRMQ 204
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S Y E+ + + + L I L DP ++ K ++L LPG
Sbjct: 205 GMPRSLDEISQYTRAPRKEIARCFRLIARELRIR-----LPLSDPRQYVPKIVEQLKLPG 259
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ A +L K +T G+ P+GL AA+Y+++L G ++ +I + + E
Sbjct: 260 D---IAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIASLLKGEVRTQKEIAQAAQVTEV 316
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 317 TVRNRYKEL 325
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A +++ +M N LN+ +I A Y AV + +GR E V A+ +Y ACR +P
Sbjct: 122 AMNELDRMANLLNL--PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQP 179
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPG 119
L + + L +N E+ Y + + L IAD + + ++ ++ L
Sbjct: 180 RTLDEIAKKLEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLR--------- 230
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
G+ + + A I+ +K IT G+ P+G+ A +Y++ + G + ++ +I + + E
Sbjct: 231 GD--IIEYAMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEV 288
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 289 TVRNRYKEI 297
>gi|161527532|ref|YP_001581358.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338833|gb|ABX11920.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 301
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L I SD ++ A Y A+ + +GR + AS LY ACR
Sbjct: 119 QAFSELNRLKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTET 176
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLP 118
P L D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 177 PRNLKDVEQAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY-- 234
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
A +L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E
Sbjct: 235 ---------AVKVLKKAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTE 285
Query: 179 ATLMKR 184
T+ R
Sbjct: 286 VTIRNR 291
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ P L + ++
Sbjct: 132 RDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIAD 191
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y L + L+I L P ++ +F L G V A +I
Sbjct: 192 VSRVSKKEVGRTYRFLTRELHIR-----LPPTSPIDYVPRFASELNLSG--VVQSKAIEI 244
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ + +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 304
Query: 191 TDSG 194
D G
Sbjct: 305 LDMG 308
>gi|399577766|ref|ZP_10771518.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399237208|gb|EJN58140.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 338
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A +M +M +AL G D + VA Y A+ + +GR E V S LY ACRQ+ P
Sbjct: 157 ALSEMDRMASAL--GVPDSVREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIP 214
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + LK VDP F+ +F L +K+
Sbjct: 215 RSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASELEL--SKE 267
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 268 VQSKANEIIDVSAEKGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVASVAQVTEVTIRN 327
Query: 184 RLIE 187
R E
Sbjct: 328 RYQE 331
>gi|14590724|ref|NP_142794.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|3257275|dbj|BAA29958.1| 208aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 208
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y + TKGR E V A+C+Y++CR P L + + + + VY
Sbjct: 44 AVRIYRKLIKSGVTKGRSIESVAAACIYISCRLYKVPRTLDEIAKVAKEDKKVIARVYRL 103
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKP 146
+ + L ++ + +++ P ++ KF D L +++V A +L K IT+G+ P
Sbjct: 104 VVKKLGLSSKDMLIR---PEYYIDKFADEL--EVSERVKRRALRLLNEAKDKGITSGKNP 158
Query: 147 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
GL + LY+++L G + ++ +I ++ I E T+ R E
Sbjct: 159 LGLAASILYIASLLEGERRTQKEIARVAGITEVTIRNRYKEL 200
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 128 RDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 187
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y L + L I L P ++ +F L G +V A +I
Sbjct: 188 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELNLSG--EVQSKAIEI 240
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 241 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 300
Query: 191 TDSG 194
D G
Sbjct: 301 LDMG 304
>gi|335434083|ref|ZP_08558890.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334898148|gb|EGM36265.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 334
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 90/198 (45%), Gaps = 17/198 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E + + LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGMATASLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L +F + + Y L + L + + DP+ +L +F L
Sbjct: 196 GTPRSLDEFEPISRVRRQKYARAYRYLARQLELG-----IAPADPAEYLPRFVSEL---- 246
Query: 121 NKKVCD----TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 176
++ D AR++L+++K+ +G+ P+GL A+Y + L G + ++ ++ + +
Sbjct: 247 --ELSDDLERKARELLSAVKKTGQHSGKNPTGLAAGAIYAAGLLTGDRITQQEVAETADV 304
Query: 177 CEATLMKRLIEFENTDSG 194
E T+ R E T G
Sbjct: 305 SEVTIRDRYSELLETLEG 322
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 173 IYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 228
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 229 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 283
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 284 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 324
>gi|386874729|ref|ZP_10116955.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807352|gb|EIJ66745.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 301
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 17/186 (9%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L I SD ++ A Y A+ + +GR + AS LY ACR +
Sbjct: 119 QAFSELNRLKDKLAI--SDAVIEKAAYIYRKALEKGLVRGRSISALMASALYAACRDTAT 176
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLP 118
P L D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 177 PRNLKDVEEAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY-- 234
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
A +L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E
Sbjct: 235 ---------AVKVLKLAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTE 285
Query: 179 ATLMKR 184
T+ R
Sbjct: 286 VTIRNR 291
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K L + SD ++ Y A+ + +GR + A+ LY ACR
Sbjct: 121 QAFSELDRLKTKLAL--SDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTET 178
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D SN +NI ++ Y L + L + + V+P + + + + G ++
Sbjct: 179 PRTLTDVSNGINIKRKDIARCYRLLLRELDLK-----MPVVNPIKCVSRISS--IAGLSE 231
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A +IL + ++ G+ P GL AALY+S + +G ++ DI + E T+
Sbjct: 232 KTKRKAVEILDQAAKIELSAGKDPMGLAAAALYLSCVINGENKTQKDIAVSAGVTEVTIR 291
Query: 183 KR 184
R
Sbjct: 292 NR 293
>gi|399578753|ref|ZP_10772498.1| Transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236212|gb|EJN57151.1| Transcription initiation factor IIB [Halogranum salarium B-1]
Length = 327
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY+ACRQ+
Sbjct: 134 LQFALSEIDRMASALGVPRS--VREVAAVIYRRALDTDLIRGRSIEGVATSALYIACRQE 191
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + S+ ++ E+G Y YIA E + + VDP +L +F L
Sbjct: 192 GIPRSLEEVSSVARVDRREIGRTY------RYIAHELGLPMSPVDPKQYLPRFCSELEL- 244
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ V A I+ + + +G+ P+G AA+Y +AL K ++ DI K+ + E
Sbjct: 245 -SEDVQQRATTIIERTTAEGLHSGKSPTGFAAAAIYTAALLCNEKRTQRDIAKVAQVTEV 303
Query: 180 TLMKRLIE 187
T+ R E
Sbjct: 304 TIRNRYRE 311
>gi|20094294|ref|NP_614141.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|24212486|sp|Q8TX21.1|TF2B_METKA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19887337|gb|AAM02071.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 307
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 10/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ + + L + ES + +A Y A +GR E V + ++ AC++
Sbjct: 120 QAFLELENLASKLQLPES--VRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARV 177
Query: 63 PFLLIDFSNYLNI-NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 121
P + + L + + E+ Y L + L + K +PS L +F +L G +
Sbjct: 178 PRTAREIAEALGVSDENEILRAYRVLQRRLNLKQ-----KPTEPSDHLPRFASKL--GVS 230
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+ V A++I+ K IT G+ P+G+ AALY++++ G + ++ +I ++ + E T+
Sbjct: 231 ENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVARVTEVTI 290
Query: 182 MKRLIEF 188
R E
Sbjct: 291 RNRYKEI 297
>gi|336373760|gb|EGO02098.1| hypothetical protein SERLA73DRAFT_177837 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386576|gb|EGO27722.1| hypothetical protein SERLADRAFT_461642 [Serpula lacrymans var.
lacrymans S7.9]
Length = 347
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 11/184 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++ACRQ P
Sbjct: 132 AFRDIGSWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVP 189
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYI-----ADESNVLKQVDPSIFLHKFTDRL-L 117
+ N +++ LG Y L Q + A +S P L ++ + L L
Sbjct: 190 RTFREICNLTHVSKKTLGQCYKALEQAFNLAPGASAHQSATAPSSGPENLLVRYCNHLDL 249
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
P + +C DI+ ++ I GR P + G A+Y + L G S DI + +
Sbjct: 250 PPNVQSICG---DIIVEARKHGIADGRSPVSIAGGAIYFTCLLLGKPKSARDISAVAGVS 306
Query: 178 EATL 181
E T+
Sbjct: 307 EGTI 310
>gi|448582204|ref|ZP_21645708.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448604362|ref|ZP_21657614.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448624090|ref|ZP_21670163.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445731852|gb|ELZ83435.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445744522|gb|ELZ95998.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445750057|gb|EMA01496.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 296
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A++ + +GR E V S LY ACR++ P
Sbjct: 113 ALSEIDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAACRKEGIP 170
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F+ L +K+
Sbjct: 171 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKE 223
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 224 VQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRN 283
Query: 184 RLIE 187
R E
Sbjct: 284 RYQE 287
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEVSDVSRVEQKEIGRTYRYVAQELELK-----MEPVDPKQYVPRFASELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQSKANEIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEVSDVSRVEQKEIGRTYRYVAQELELK-----MEPVDPKQYVPRFASELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQSKANEIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|448292886|ref|ZP_21483207.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448543300|ref|ZP_21624869.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448550186|ref|ZP_21628709.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448559542|ref|ZP_21633616.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448572791|ref|ZP_21640552.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448597013|ref|ZP_21654151.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445571861|gb|ELY26404.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445706844|gb|ELZ58717.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445710932|gb|ELZ62727.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445711961|gb|ELZ63747.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445719563|gb|ELZ71242.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445740894|gb|ELZ92399.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 296
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A++ + +GR E V S LY ACR++ P
Sbjct: 113 ALSEIDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVATSALYAACRKEGIP 170
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F+ L +K+
Sbjct: 171 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKE 223
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 224 VQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRN 283
Query: 184 RLIE 187
R E
Sbjct: 284 RYQE 287
>gi|327259002|ref|XP_003214327.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Anolis
carolinensis]
Length = 672
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 302 VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 361
V+ P ES+ P E + T D DG + + IDD E+D Y+
Sbjct: 398 VRPPALESLLGPLPTAASLGITESIKECILTKDRDLNENTEDGELDLNGIDDTEIDMYIL 457
Query: 362 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 421
NE E K +W + N +YL+EQ KEA A K EL
Sbjct: 458 NESEAQIKAELWMKENADYLKEQKEKEARIAKEK------------------ELGIY--- 496
Query: 422 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++A+ + A TA EA +ML +K++SSKINY+VL L
Sbjct: 497 ------KEHKPKKSAKKRELIQASTAGEAIEKMLEQKKISSKINYNVLRDL 541
>gi|449278527|gb|EMC86349.1| Transcription factor IIIB 90 kDa subunit, partial [Columba livia]
Length = 536
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 27/171 (15%)
Query: 302 VQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLH 361
V+ P ES+ P E + T + DG + S IDD E+D Y+
Sbjct: 348 VRPPALESLLGPLPTAASLGITESIKECISTKDQEPDENTGDGELDLSGIDDSEIDRYIL 407
Query: 362 NEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAA 421
NE E K +W + N +YL+EQ KEA A K EL
Sbjct: 408 NETEAQIKAELWMKENADYLKEQKEKEARIAKEK------------------ELGIY--- 446
Query: 422 AVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++A+ + A TA EA +ML +K++SSKINY+VL L
Sbjct: 447 ------KEHKPKKSAKKREPIQASTAGEAIEKMLEQKKISSKINYNVLRDL 491
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL I S + VA Y A+ + +GR E V +CLY ACR++ P
Sbjct: 138 ALSEIDRMASALGIPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAACRREGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L +A ++ VDP ++ +F L ++
Sbjct: 196 RSLEEIADVSRVERKEIGRTYRYIAQELSLA-----MEPVDPKEYVPRFCSEL--DSSET 248
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 249 VQAKATEIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKRTQKEVAAVAQVTEVTIRN 308
Query: 184 RLIE 187
R E
Sbjct: 309 RYQE 312
>gi|389846162|ref|YP_006348401.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448616218|ref|ZP_21664928.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243468|gb|AFK18414.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445750873|gb|EMA02310.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 326
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 143 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEGIP 200
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F+ L +K+
Sbjct: 201 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKE 253
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 254 VQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRN 313
Query: 184 RLIE 187
R E
Sbjct: 314 RYQE 317
>gi|340345049|ref|ZP_08668181.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520190|gb|EGP93913.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 303
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++M ++K+ L + +D +V A Y A+ + +GR + + A+CLY ACR
Sbjct: 119 LRQALNEMGKLKDKLAL--TDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYAACRNT 176
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D +N +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDVANGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A +IL K + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAVEILEQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVT 289
Query: 181 LMKR 184
+ R
Sbjct: 290 IRNR 293
>gi|320100432|ref|YP_004176024.1| transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
gi|319752784|gb|ADV64542.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
mucosus DSM 2162]
Length = 315
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ + LN+ + A R Y AV R +GR E V A+ +YLACR+
Sbjct: 128 LAQAMNELDRLADVLNL--PSYVKEEAARIYREAVDRGLVRGRSIESVIAAAIYLACREM 185
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + + + I E+ Y L + L I + DP+ ++ + L LPG
Sbjct: 186 KVPRSLDEITRHTRIGRKEIARCYRLLLRELRIK-----VSTTDPADYVPRIVHGLGLPG 240
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+ A +I+ + K +T G+ P+GL AA+Y++A G K ++ +I I + E
Sbjct: 241 QAVKL---AIEIINTAKEHGVTGGKDPAGLAAAAVYMAAERLGEKKTQKEIAHIAGVTEV 297
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 298 TVRNRYKEL 306
>gi|345005737|ref|YP_004808590.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344321363|gb|AEN06217.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 318
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+
Sbjct: 133 LQFALSEVDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQE 190
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+G Y + Q L + LK VDP F+ +F L G
Sbjct: 191 GIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASEL--GL 243
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T
Sbjct: 244 SEEVQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVT 303
Query: 181 LMKRLIE 187
+ R E
Sbjct: 304 IRNRYQE 310
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y L +
Sbjct: 170 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLAR 229
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 148
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 230 ELGIK-----LTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPTG 281
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 282 VAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 321
>gi|118577046|ref|YP_876789.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195567|gb|ABK78485.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L I SD ++ A Y A+ + +GR + AS LY ACR +
Sbjct: 121 QAFSELNRLKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTAT 178
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLP 118
P L D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 179 PRNLKDVEEAANIKRKDIARCYRLLVKELDLRMPVTDSIQCVARISSHIGIAEKTKRY-- 236
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
A +L ++ ++ G+ P GL AALY+S + +G ++ DI ++ E
Sbjct: 237 ---------AVVVLKEAQKHEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIADAANVTE 287
Query: 179 ATLMKR 184
T+ R
Sbjct: 288 VTIRNR 293
>gi|20094057|ref|NP_613904.1| transcription initiation factor IIB [Methanopyrus kandleri AV19]
gi|19887040|gb|AAM01834.1| Transcription initiation factor IIB [Methanopyrus kandleri AV19]
Length = 341
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 16 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 75
NI S IV A R Y AV ++ +GR E A+ L++AC+++ P + + + I
Sbjct: 127 NIPRS--IVDEAIRIYRKAVEKDLVRGRSIENTAAAALFMACKKRKHPRTIKEIAKLFGI 184
Query: 76 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 135
++ + L + L + + DP +L +F L G ++ V AR+IL
Sbjct: 185 TPKDINRTHRVLLRHL-----NERMPAPDPKQYLSRFATEL--GVSEDVEMLAREILEKA 237
Query: 136 KRDWITTGRKPSGLCGAALYVSAL 159
++ +T R P+GL GAALY++ L
Sbjct: 238 EKKGLTVSRNPAGLAGAALYLAGL 261
>gi|392587013|gb|EIW76348.1| transcription initiation factor IIB [Coniophora puteana RWD-64-598
SS2]
Length = 353
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 14/207 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++ACRQ P
Sbjct: 136 AFRDIGGWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVP 193
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADES-------NVLKQVDPSIFLHKFTDRL 116
+ N N++ LG Y L Q + S + P L ++ + L
Sbjct: 194 RTFREICNLTNVSKKTLGQCYKALEQAFNLTPGSGSGGASIHPSPSTGPENLLVRYCNHL 253
Query: 117 -LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175
LP + +C DI+ + ++ I GR P + G A+Y + G S DI +
Sbjct: 254 DLPANVQSICG---DIIVAARKHGIADGRSPVSIAGGAIYFTCHLLGKAKSARDISSVAG 310
Query: 176 ICEATLMKRLIEFENTDSGSLTIEDFM 202
+ E T+ K + TD L +D++
Sbjct: 311 VSEGTI-KLVYRLYYTDREKLVKQDWI 336
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEIAE 190
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ + +T+GR P+G+ AALY++++ G ++ D+ ++ + E T+ R E E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGECKTQRDVAEVAGVTEVTIRNRYKELTEQ 303
Query: 191 TDSG 194
D G
Sbjct: 304 LDLG 307
>gi|355778899|gb|EHH63935.1| hypothetical protein EGM_17013, partial [Macaca fascicularis]
Length = 316
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 88 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 147
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
EL KE + K++ + + A TA EA +ML
Sbjct: 148 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 180
Query: 456 TKKRLSSKINYDVLEKL 472
+K++SSKINY VL L
Sbjct: 181 EQKKISSKINYSVLRGL 197
>gi|355693619|gb|EHH28222.1| hypothetical protein EGK_18610, partial [Macaca mulatta]
Length = 316
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 336 DATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
D + DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 88 DPKDASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK 147
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRML 455
EL KE + K++ + + A TA EA +ML
Sbjct: 148 ------------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKML 180
Query: 456 TKKRLSSKINYDVLEKL 472
+K++SSKINY VL L
Sbjct: 181 EQKKISSKINYSVLRGL 197
>gi|448613430|ref|ZP_21663310.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740327|gb|ELZ91833.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 326
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 143 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEGIP 200
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F+ L +K+
Sbjct: 201 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--DLSKE 253
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 254 VQSKANEIIETTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 313
Query: 184 RLIE 187
R E
Sbjct: 314 RYQE 317
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A RQ
Sbjct: 141 LKQALGEIERMSSAL--GLPDNVRETASVIYRRALNEDLLPGRSIEGVATSALYAAARQA 198
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
+ P L + +N + E+ Y + + L + + DP+ ++ +F L LP
Sbjct: 199 NTPRSLDEVANVSRVERDEIARTYRYVVRELGLE-----VAPTDPASYVPRFCSELDLP- 252
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V AR++L + + IT+G+ P GL AA+Y ++L + ++S++ + +I E
Sbjct: 253 --DEVERRARELLTAAEDAGITSGKSPVGLAAAAVYAASLLTNERITQSEVSDVANISEV 310
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 311 TIRNRYHEI 319
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V SCLY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATSCLYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 193 RSLEEVSDVSRVEQKEIGRTYRYVAQELKLK-----MEPVDPKQYVPRFASELEL--SEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQSKANEIIDVTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
A +G + A Y AV + +GR E V A+ +Y ACR+ P L + +
Sbjct: 143 ASKLGLPKHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAACRKYRVPRTLDEIAEVS 202
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDIL 132
++ E+G Y L + L I L +P ++ +F L LPG +V A IL
Sbjct: 203 RVDKKEIGRTYRFLARELKIK-----LAPTNPIDYVPRFASELGLPG---EVESKAIQIL 254
Query: 133 ASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+T+GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 255 KKAAEKGLTSGRGPTGVAAAAIYIASVLLGHRRTQREVAEVAGVTEVTIRNRYKEL 310
>gi|448420259|ref|ZP_21581021.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445673877|gb|ELZ26432.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 317
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + LK VDP F+ +F L G +++
Sbjct: 193 RSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--GLSEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|408403674|ref|YP_006861657.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364270|gb|AFU58000.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 269
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +AF ++ ++K+ L G SD ++ Y A R +GR + + LY+ACR+
Sbjct: 84 LRQAFSELDRLKDKL--GVSDAVIEKTAYIYRKAQERGLVRGRTISAMVGAALYIACRET 141
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
L D + NI +L +Y + L + + +DP + + +R L
Sbjct: 142 GASRTLKDIAEIGNIKRKDLARIYRLVVMELDLK-----IPMIDPMKCIVRVANRANLSE 196
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A +I+ + + I+ G+ P GL + LY++ L G +++DI + + E
Sbjct: 197 RTKRV---AMNIMKGVTKSGISAGKDPMGLAASVLYLACLNTGESRTQTDIAEAAGVTEV 253
Query: 180 TLMKR 184
T+ R
Sbjct: 254 TVRNR 258
>gi|448579977|ref|ZP_21644806.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445722650|gb|ELZ74307.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 325
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V +CLY ACR++ P
Sbjct: 142 ALSEIDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAACRKEGIP 199
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + ++ VDP ++ +F+ L +K+
Sbjct: 200 RSLEEIAEVSRVERKEIGRTYRYVSQELGLE-----MRPVDPKKYVPRFSSEL--DLSKE 252
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 253 VQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 312
Query: 184 RLIE 187
R E
Sbjct: 313 RYQE 316
>gi|313126498|ref|YP_004036768.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292863|gb|ADQ67323.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 317
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + LK VDP F+ +F L G +++
Sbjct: 193 RSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--GLSEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ ++ + LN+ + + A Y AV + +GR E+V A+ LY ACR+ + P
Sbjct: 122 ALSELDRIASRLNLPRT--VRETASVIYRDAVKKKLIRGRSIEEVVAAALYAACRKCNVP 179
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + +G Y L + L I L P ++ +F L G + K
Sbjct: 180 RTLDEIAEVSGVKKKGVGRTYRFLARKLNIR-----LPPTSPIDYVPRFASEL--GLSGK 232
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +T+GR P+G+ AALY++++ + ++ +I ++ I E T+
Sbjct: 233 VQSKAIEIIKKAMKKGLTSGRGPTGVAAAALYIASVLLRERRTQREIAEVAGITEVTIRN 292
Query: 184 RLIEF 188
R E
Sbjct: 293 RYREL 297
>gi|448589961|ref|ZP_21650020.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735076|gb|ELZ86629.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 325
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V +CLY ACR++ P
Sbjct: 142 ALSEVDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAACRKEGIP 199
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + ++ VDP ++ +F+ L +K+
Sbjct: 200 RSLEEIAEVSRVERKEIGRTYRYVSQELGLE-----MRPVDPKKYVPRFSSEL--DLSKE 252
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 253 VQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 312
Query: 184 RLIE 187
R E
Sbjct: 313 RYQE 316
>gi|448419740|ref|ZP_21580584.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674654|gb|ELZ27191.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 334
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 151 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEGIP 208
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ + E+G Y + Q L + +K VDP ++ +F+ L +K+
Sbjct: 209 RSLEEISDVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFSSELEL--SKE 261
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 262 VQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 321
Query: 184 RLIE 187
R E
Sbjct: 322 RYQE 325
>gi|357508869|ref|XP_003624723.1| hypothetical protein MTR_7g086760 [Medicago truncatula]
gi|355499738|gb|AES80941.1| hypothetical protein MTR_7g086760 [Medicago truncatula]
Length = 315
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 53/208 (25%)
Query: 179 ATLMKRLIEFENTDSGSLTIEDF--MARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDT 236
A + ++L+E + +S L +E+ MA++ E + A+ N P C+HKD+
Sbjct: 34 AAIREQLVELDLRES--LFVEELNTMAKEHEKNSEFKASTSKNLP-------CQCEHKDS 84
Query: 237 GKPF-ACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDSPF 295
+ GLC +C++ + A A++ E+E + A+A E FE
Sbjct: 85 KVSYCVLGLCETCFKHVLK--------ASNSAYKRQEKELL--AAALERDDFE------- 127
Query: 296 MSRVDKVQSPEPESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFE 355
+ S++ + + D+T EA D S++FSDIDD E
Sbjct: 128 ------------------------SESSKDDDNDDSHRDDDSTAEAQDESESFSDIDDEE 163
Query: 356 VDGYLHNEEEKHYKKIIWEEMNREYLEE 383
VDGYL NEEE+HY++ WE +EY EE
Sbjct: 164 VDGYLLNEEERHYRQKTWENQYQEYYEE 191
>gi|399578525|ref|ZP_10772272.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236411|gb|EJN57348.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A +M +M +AL + S VA Y A+ + +GR E V CLY ACRQ+
Sbjct: 134 LQFALSEMDRMASALGVPRSTR--EVASVIYRRALNEDLIRGRSIEGVATGCLYAACRQE 191
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 118
P L + ++ + E+G Y Y+A E ++ ++ VDP F+ +F L +P
Sbjct: 192 GIPRSLDEVADVSRVPYQEIGRTY------RYVAKELSLEMRPVDPKEFVPRFASELDVP 245
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
++V A +I+ + + +G+ P+G AALY + L K ++ ++ + + E
Sbjct: 246 ---EEVEQKANEIIDTSAEAGLLSGKSPTGFAAAALYAAGLLCNKKRTQREVADVAQVTE 302
Query: 179 ATLMKRLIE 187
T+ R E
Sbjct: 303 VTIRNRYQE 311
>gi|218883370|ref|YP_002427752.1| transcription initiation factor IIB [Desulfurococcus kamchatkensis
1221n]
gi|218764986|gb|ACL10385.1| Transcription initiation factor IIB (TFIIB) [Desulfurococcus
kamchatkensis 1221n]
Length = 319
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ + LN+ + A R Y AV + +GR E + A+ +YLACR+
Sbjct: 132 LAQAMNELDRLSDILNL--PSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREM 189
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + + + +N E+ Y L + L+I + DP ++ + L LPG
Sbjct: 190 KVPRSLDEITRHTRVNRKEIARCYRLLLRELHIK-----VTTTDPVDYVPRIVHGLGLPG 244
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+ A +I+ K +T G+ P+GL AA+Y++A G K ++ +I + + E
Sbjct: 245 QAVKI---AIEIINKAKEQGVTGGKDPAGLAAAAVYIAAEQLGEKRTQKEIAHVAGVTEV 301
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 302 TVRNRYKEL 310
>gi|407465174|ref|YP_006776056.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048362|gb|AFS83114.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 315
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ +K+ L++ SD ++ A Y A+ + KGR + A+ LY ACR
Sbjct: 124 LRQALSELSTLKDKLSL--SDAVIEKASYIYRKALEKGLVKGRSISALIAASLYAACRDT 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D S+ NI ++ Y L Q L + + VDP + + + G
Sbjct: 182 ETPRTLKDVSDAGNIKKKDISRCYRILHQELELK-----MPVVDPVQCVARIASSI--GI 234
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+K A +L + + G+ P GL AALY+S + +G ++ DI + ++ E T
Sbjct: 235 TEKTKRYAVKVLKDAQAHEESAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTEVT 294
Query: 181 LMKR 184
+ R
Sbjct: 295 IRNR 298
>gi|448726653|ref|ZP_21709047.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
gi|445793983|gb|EMA44547.1| transcription initiation factor TFB [Halococcus morrhuae DSM 1307]
Length = 305
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y ++A + +GR E V S LY ACR++ P
Sbjct: 122 ALSEIDRMASALGVPRS--VREVASVIYRRSLADDLIRGRSIEGVATSALYAACRKEGIP 179
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 180 RSLEEISEVSRVERKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELTL--SEE 232
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A DI+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 233 VQAKANDIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 292
Query: 184 RLIE 187
R E
Sbjct: 293 RYQE 296
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+
Sbjct: 137 LQFALSEIDRMSSALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQE 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+G Y + Q L + L+ VDP ++ +F L G
Sbjct: 195 GIPRSLDEVADVARVEQKEIGRTYRYIAQELSLG-----LEPVDPVQYVPRFCSEL--GL 247
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V R+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T
Sbjct: 248 SEEVEQKTREIIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVT 307
Query: 181 LMKRLIE 187
+ R E
Sbjct: 308 IRNRYQE 314
>gi|313127213|ref|YP_004037483.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288315|ref|ZP_21479515.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293578|gb|ADQ68038.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569834|gb|ELY24404.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 144 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRKEGIP 201
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ + E+G Y + Q L + +K VDP ++ +F+ L +K+
Sbjct: 202 RSLEEISDVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFSSEL--DLSKE 254
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 255 VQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 314
Query: 184 RLIE 187
R E
Sbjct: 315 RYQE 318
>gi|340344812|ref|ZP_08667944.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519953|gb|EGP93676.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 309
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ ++K+ L++ SD ++ A Y A+ + +GR + AS LY ACR
Sbjct: 124 LRQALSELSRLKDKLSL--SDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDT 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D S+ NI ++ Y L + L + + VDP + + +L G
Sbjct: 182 ETPRTLKDVSDAGNIKKKDIARCYRLLHRELDLK-----MPVVDPIQCVARIASKL--GI 234
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A +L + + + G+ P GL AALY+S + + ++ DI + + E T
Sbjct: 235 SEKTKRFAVKVLKTAQEHEESAGKDPMGLAAAALYLSCVNNCENMTQRDIAEAASVTEVT 294
Query: 181 LMKRL--IEFENTD 192
+ R + + TD
Sbjct: 295 IRNRYKGLRLDQTD 308
>gi|448286652|ref|ZP_21477877.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445574029|gb|ELY28538.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 304
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 9/187 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+
Sbjct: 119 LQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQE 176
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+G Y + Q L + LK VDP F+ +F L G
Sbjct: 177 GIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--GL 229
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T
Sbjct: 230 SEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVT 289
Query: 181 LMKRLIE 187
+ R E
Sbjct: 290 IRNRYQE 296
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K L + SD ++ Y A+ + +GR + A+ LY ACR
Sbjct: 121 QAFSELDRLKTKLAL--SDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTET 178
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D +N +NI ++ Y L + L + + V+P + + + G ++
Sbjct: 179 PRTLSDVANSINIKRKDIARCYRLLLRELDLK-----MPVVNPVKCISRISSN--AGLSE 231
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A +IL + ++ G+ P GL AALY+S + +G ++ DI + E T+
Sbjct: 232 KTKRKAIEILDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIR 291
Query: 183 KR 184
R
Sbjct: 292 NR 293
>gi|261402160|ref|YP_003246384.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
gi|261369153|gb|ACX71902.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
Length = 666
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 505 IYRNAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 560
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 561 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQATEKGLTSGRGPT 615
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 616 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 656
>gi|383619979|ref|ZP_09946385.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|448696408|ref|ZP_21697882.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
gi|445783614|gb|EMA34442.1| transcription initiation factor TFB [Halobiforma lacisalsi AJ5]
Length = 321
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + V+ Y A+ + +GR E V SCLY CRQ+ P
Sbjct: 139 ALSEIDRMASALGVPRS--VREVSSVIYRRALTEDLIRGRSIEGVATSCLYAGCRQEGIP 196
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + + E+G Y Y+A E + +K VDP ++ +F L ++
Sbjct: 197 RSLEEVAEVSRVEKKEIGRTY------RYVAKELGLEMKPVDPKEYVPRFCSDL--EASE 248
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 249 EVEMKATEIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIR 308
Query: 183 KRLIE 187
R E
Sbjct: 309 NRYQE 313
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K L + SD ++ Y A+ + +GR + A+ LY ACR
Sbjct: 121 QAFSELDRLKTKLAL--SDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTET 178
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D +N +NI ++ Y L + L + + V+P + + + G ++
Sbjct: 179 PRTLSDVANSINIKRKDIARCYRLLLRELDLK-----MPVVNPVKCISRISSN--AGLSE 231
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A +IL + ++ G+ P GL AALY+S + +G ++ DI + E T+
Sbjct: 232 KTKRKAIEILDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIR 291
Query: 183 KR 184
R
Sbjct: 292 NR 293
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
+ E+G Y L + L I L P ++ +F L G + A +I
Sbjct: 191 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELGLSGEAQ--SRAIEI 243
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E
Sbjct: 244 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKEL 300
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++M +MK+ L + +D ++ A Y A+ + +GR + A+CLY ACR
Sbjct: 145 LRQALNEMDKMKDKLAL--ADAVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNT 202
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 203 ETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 255
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
N++ A IL K+ + G+ P G+ AALY++ + G S+ DI + E T
Sbjct: 256 NERTKRRAITILDQAKKLGMVAGKDPMGIAAAALYLACIGSGEAKSQKDISLASGVTEVT 315
Query: 181 LMKR 184
+ R
Sbjct: 316 IRNR 319
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P
Sbjct: 136 ALSEIDRMSSALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIP 193
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + L+ VDP ++ +F L G +++
Sbjct: 194 RSLDEVAEVARVEQKEIGRTYRYIAQELSLG-----LEPVDPVQYVPRFCSEL--GLSEE 246
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V R+I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 247 VEQKTREIIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRN 306
Query: 184 RLIE 187
R E
Sbjct: 307 RYQE 310
>gi|260818777|ref|XP_002604559.1| hypothetical protein BRAFLDRAFT_79421 [Branchiostoma floridae]
gi|229289886|gb|EEN60570.1| hypothetical protein BRAFLDRAFT_79421 [Branchiostoma floridae]
Length = 1246
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 119/276 (43%), Gaps = 29/276 (10%)
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V TA +++ MKRDW+ GR+PSGLCGAAL VSA H ++ +I+K++ E L
Sbjct: 176 EVSMTALRLVSRMKRDWMHGGRQPSGLCGAALLVSARLHDFHRTQKEIIKVL---EEQLD 232
Query: 183 KRL------IEFENTDSGSLTIEDFMARKKEL--HEGVAANLPNNGPKVSGMNEVLCKHK 234
K + +E E E M + K L +G+ + P S M + +
Sbjct: 233 KEIEGELTSLEVEIEKELEREREKRMKKMKNLLAAKGITESDIRGTPAGSPMPPLEGQED 292
Query: 235 DTGKP-FACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERESDS 293
T P C S ++ G +PP + +E++ + +E E E
Sbjct: 293 GTSSPGTPCSRVDS-----PSVVPGTSSSGNPPEQKHSEQQHSEQQLPQEQQLSEEEVMG 347
Query: 294 PFMSRVDKV-----QSPEPESIGVPKNC--TTQTASNEGEGDHTKTPGVDATTEASDGSD 346
+S + P PES+G+ + + AS + + + + G
Sbjct: 348 KILSPFAGIAPALGPEPTPESLGIKDSLDECLKVAS-----EKEEGTEDEDGEKEEGGEL 402
Query: 347 NFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLE 382
+ + I+D E+D +L N+EE K IW N +Y++
Sbjct: 403 DLTGINDEELDWFLLNDEEVRIKTEIWTLANADYIQ 438
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 93 IADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSGLCG 151
+ + S + DP +++H+F +L G +V TA +++ MKRDW+ GR+PSGLCG
Sbjct: 4 VPENSGCVSAGDPCLYIHRFAHKLEFGERTHEVSMTALRLVSRMKRDWMHGGRRPSGLCG 63
Query: 152 AAL 154
A +
Sbjct: 64 AGV 66
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 429 EKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
+ Q +R + K A TA EA +ML +K++SSKINYDVL L
Sbjct: 1073 QGQLRRKPKKKQPIQASTAGEAIEKMLQEKKISSKINYDVLRDL 1116
>gi|167044633|gb|ABZ09305.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG7F19]
Length = 300
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 9/190 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +M +MK L++ +D ++ A Y A+ R KGR + A+C+Y +CR
Sbjct: 118 LRQALSEMDKMKAKLSL--TDPVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRNT 175
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L D +N +NI ++ Y + + L + + DP + + + G
Sbjct: 176 ETSRTLDDIANGINIRRKDVARCYRLIFRELDLK-----IPVPDPVKGVSRIAS--IAGL 228
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+K A +IL K+ I G+ P G+ AALY++ ++ G ++ +I + E T
Sbjct: 229 GEKTKRKAINILNKAKKLGIVAGKDPMGIAAAALYLACISSGGSKTQKEISIASGVTEVT 288
Query: 181 LMKRLIEFEN 190
+ R N
Sbjct: 289 IRNRCAGLRN 298
>gi|399577427|ref|ZP_10771180.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399237810|gb|EJN58741.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 325
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G D + +A Y A+ + +GR E V L+ A R ++ P
Sbjct: 142 ALSEIDRMVSAL--GAPDNVQEMASVIYRRALDEDLIRGRSIEGVATGALHAAMRCEAIP 199
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ ++ +G Y L Q L + + DPS ++ ++ L +
Sbjct: 200 RTLEEVSDVARVDHNRVGRAYRHLSQELGLE-----VSPTDPSQYVPRYCSAL--DVSSL 252
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+A + + G+ PSG +A+Y++++ G K +++D+ + + E T+
Sbjct: 253 VEQKATEIVADTTEEGLHAGKSPSGFAASAVYLASMLCGEKETQADVADVADVTEVTIRT 312
Query: 184 RLIE 187
R E
Sbjct: 313 RYQE 316
>gi|448456850|ref|ZP_21595506.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445811447|gb|EMA61454.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 581
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 138 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ + E+G Y + Q L + ++ VDP ++ +F+ L +++
Sbjct: 196 RSLEEISDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELE--LSEE 248
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 249 VQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 308
Query: 184 RLIE 187
R E
Sbjct: 309 RYQE 312
>gi|18312777|ref|NP_559444.1| transcription initiation factor IIB [Pyrobaculum aerophilum str.
IM2]
gi|21363011|sp|Q8ZWS3.1|TF2B_PYRAE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|18160260|gb|AAL63626.1| transcription initiation factor IIB (TFIIB) [Pyrobaculum aerophilum
str. IM2]
Length = 333
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++++A+ I + A Y A+ + +GR E + A+ LY+ACR
Sbjct: 146 QAAQELERLRSAMGIPRP--CIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKM 203
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP +++ + ++L G
Sbjct: 204 PRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPILYISRIAEQLKLSG- 256
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 257 -EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 182 MKRLIEF 188
R E
Sbjct: 316 RNRYKEL 322
>gi|448737144|ref|ZP_21719196.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445804357|gb|EMA54614.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 305
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y ++A + +GR E V S LY ACR++ P
Sbjct: 122 ALSEIDRMASALGVPRS--VREVASVIYRRSLADDLIRGRSIEGVATSALYAACRKEGIP 179
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 180 RSLEEISEVSRVERKEIGRTYRYVSQELALE-----MRPVDPKKYVPRFCSELTL--SEE 232
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A DI+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 233 VQAKANDIIETTADEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 292
Query: 184 RLIE 187
R E
Sbjct: 293 RYQE 296
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P
Sbjct: 131 ALSEIDRMASALGVPRS--VREVASVIYRRALDEDLIRGRSIEGVATACLYAACRQEDIP 188
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 189 RSLEEVSEVSRVEQKEIGRTYRYVAQELSLK-----MEPVDPKQYVPRFVSELEL--SEE 241
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 242 VQAKANEIIDVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 301
Query: 184 RLIE 187
R E
Sbjct: 302 RYQE 305
>gi|171185160|ref|YP_001794079.1| transcription initiation factor IIB [Pyrobaculum neutrophilum
V24Sta]
gi|226703639|sp|B1YCX0.1|TF2B_THENV RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|170934372|gb|ACB39633.1| Transcription factor TFIIB cyclin-related [Pyrobaculum neutrophilum
V24Sta]
Length = 333
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++++++ I + A Y A+ + +GR E + A+ LY+ACR
Sbjct: 146 QAAQELERLRSSMGIPRP--CIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKM 203
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP++++ + ++L G
Sbjct: 204 PRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPTLYISRIAEQLKLSG- 256
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 257 -EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 182 MKRLIEF 188
R E
Sbjct: 316 RNRYKEL 322
>gi|110667197|ref|YP_657008.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109624944|emb|CAJ51356.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 329
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A++ + +GR E V S LY ACR++ P
Sbjct: 146 ALSEVDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIP 203
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +K+
Sbjct: 204 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSEL--DLSKE 256
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 257 VQSKADEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 316
Query: 184 RLIE 187
R E
Sbjct: 317 RYQE 320
>gi|260945447|ref|XP_002617021.1| hypothetical protein CLUG_02465 [Clavispora lusitaniae ATCC 42720]
gi|238848875|gb|EEQ38339.1| hypothetical protein CLUG_02465 [Clavispora lusitaniae ATCC 42720]
Length = 217
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 135 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSG 194
M DWI GR+P+G+ GA + ++A + + + ++IV + + E T+ KRL EF+NT S
Sbjct: 1 MSSDWIHEGRRPAGIAGACVLLAARMNHINRTHAEIVAVARVGEETIQKRLNEFKNTTSA 60
Query: 195 SLTIEDF 201
+LTI +F
Sbjct: 61 NLTISEF 67
>gi|448331660|ref|ZP_21520921.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
gi|445608983|gb|ELY62798.1| transcription initiation factor IIB [Natrinema versiforme JCM
10478]
Length = 235
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + +A Y A+ + +GR E V SCLY ACRQ P
Sbjct: 53 ALSEIDRMASALGVPRS--VREIASVIYRRALDEDLIRGRSIEGVATSCLYAACRQDGIP 110
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 111 RSLEEIADVSRVERKEIGRTYRYVAQELSLE-----MEPVDPKEYVPRFCSEL--DSSEE 163
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ D+ + + E T+
Sbjct: 164 VLAKANEIIDVTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQRDVADVAQVTEVTIRN 223
Query: 184 RLIE 187
R E
Sbjct: 224 RYQE 227
>gi|385802603|ref|YP_005839003.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728095|emb|CCC39217.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 329
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A++ + +GR E V S LY ACR++ P
Sbjct: 146 ALSEVDRMASALGVPRS--VREVASVIYRRALSEDLIRGRSIEGVSTSALYAACRKEGIP 203
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +K+
Sbjct: 204 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSEL--DLSKE 256
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 257 VQSKADEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 316
Query: 184 RLIE 187
R E
Sbjct: 317 RYQE 320
>gi|409049636|gb|EKM59113.1| hypothetical protein PHACADRAFT_249341 [Phanerochaete carnosa
HHB-10118-sp]
Length = 350
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 13/187 (6%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++ACR+
Sbjct: 133 QAFRDISSWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRKAHV 190
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD-------PSIFLHKFTDR 115
P + N +++ LG Y QL Q + ++ +Q P L ++ +
Sbjct: 191 PRTFREICNLTHVSKKVLGQCYKQLEQAFNLTPGASADRQTSSATSSTGPEDLLVRYCNH 250
Query: 116 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 174
L LP + +C DI+ + I GR P + G A+Y + G S DI +
Sbjct: 251 LDLPPNVQPICS---DIIVKARDLGIALGRSPISVAGGAIYFTCHLLGKPKSMKDISAVA 307
Query: 175 HICEATL 181
+ EAT+
Sbjct: 308 GVSEATI 314
>gi|224053717|ref|XP_002297944.1| predicted protein [Populus trichocarpa]
gi|118481931|gb|ABK92899.1| unknown [Populus trichocarpa]
gi|222845202|gb|EEE82749.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 47/139 (33%)
Query: 338 TTEASDGSDNFSDIDDFEVDGYL-HNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKA 396
+T A++ S++ SDIDD E+ GYL HNE+E +K+ +WE MN++YL
Sbjct: 59 STAAANDSEDLSDIDDAEIAGYLLHNEKEMEFKRTLWEMMNKKYL--------------- 103
Query: 397 ALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLT 456
K Q K A + K P++ A++ +
Sbjct: 104 -------------------------------KGNQLKGARKVKKRTPSKKAIKIAGQTEN 132
Query: 457 KKRLSSKINYDVLEKLFDD 475
K R SSKINYDVL+KL DD
Sbjct: 133 KTRSSSKINYDVLKKLLDD 151
>gi|222478746|ref|YP_002564983.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222451648|gb|ACM55913.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 150 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIP 207
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ + E+G Y + Q L + ++ VDP ++ +F+ L +++
Sbjct: 208 RSLEEISDVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEE 260
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 261 VQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 320
Query: 184 RLIE 187
R E
Sbjct: 321 RYQE 324
>gi|448498359|ref|ZP_21610792.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445698780|gb|ELZ50819.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++
Sbjct: 192 RSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 245 VQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>gi|448434664|ref|ZP_21586438.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|448531800|ref|ZP_21621088.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445684660|gb|ELZ37033.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445707005|gb|ELZ58873.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++
Sbjct: 192 RSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 245 VQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>gi|449500687|ref|XP_004161168.1| PREDICTED: uncharacterized protein LOC101224631 [Cucumis sativus]
Length = 111
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 26/107 (24%)
Query: 346 DNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNC 405
++ D+ D EV+ YL+N +E HYKKIIWE++N++YL++QAAK+
Sbjct: 27 EDLGDVFDSEVNSYLNNRKEAHYKKIIWEQINKDYLQDQAAKK----------------- 69
Query: 406 PEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATR 452
Q L A+AV K K++Q R EA + PAQ TR
Sbjct: 70 -------QGLNVVGASAVVKKSKKRQ--RKTEAPINMPAQADTGTTR 107
>gi|15668963|ref|NP_247767.1| transcription initiation factor IIB [Methanocaldococcus jannaschii
DSM 2661]
gi|2833587|sp|Q58192.1|TF2B_METJA RecName: Full=Transcription initiation factor IIB; Short=TFIIB;
Contains: RecName: Full=Endonuclease Mja Tfb; AltName:
Full=Mja TFIIB intein; AltName: Full=Mja Tfb intein
gi|1591481|gb|AAB98771.1| transcription initiation factor IIB (TFIIB) [Methanocaldococcus
jannaschii DSM 2661]
Length = 673
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 512 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 567
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 568 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 622
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 623 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 663
>gi|399578723|ref|ZP_10772468.1| transcription initiation factor IIB [Halogranum salarium B-1]
gi|399236182|gb|EJN57121.1| transcription initiation factor IIB [Halogranum salarium B-1]
Length = 319
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A +M +M +AL G VA Y A+ + +GR E V SCLY ACR + P
Sbjct: 137 ALSEMDRMASAL--GAPRSTREVASVLYRRALNEDLIRGRSIEAVSTSCLYAACRMEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + ++ VDP ++ +F L G +++
Sbjct: 195 RSLDEVTEVARVPYKEIGRTYRYIAQELKLE-----MQPVDPKEYVPRFASEL--GVSEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AALY ++L K ++ ++ ++ + E T+
Sbjct: 248 VKQKANEIIDVSAEQGLLSGKSPTGFAAAALYAASLLCNEKKTQREVAEVSQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|15789546|ref|NP_279370.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235257|ref|YP_001688457.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195248|sp|Q9HSF7.1|TF2B7_HALSA RecName: Full=Transcription initiation factor IIB 7; Short=TFIIB 7
gi|10579892|gb|AAG18850.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726323|emb|CAP13104.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 323
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 140 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 197
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + +K VDP ++ +F L ++
Sbjct: 198 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELEL--TEE 250
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 251 VQSKANEIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 310
Query: 184 RLIE 187
R E
Sbjct: 311 RYQE 314
>gi|354612079|ref|ZP_09030031.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353191657|gb|EHB57163.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 320
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + +K VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|124360449|gb|ABN08459.1| hypothetical protein MtrDRAFT_AC157472g6v2 [Medicago truncatula]
Length = 149
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 36/47 (76%)
Query: 337 ATTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEE 383
+T EA D S++FSDIDD EVDGYL NEEE+HY++ WE +EY EE
Sbjct: 95 STAEAQDESESFSDIDDEEVDGYLLNEEERHYRQKTWENQYQEYYEE 141
>gi|390937904|ref|YP_006401642.1| transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
gi|390191011|gb|AFL66067.1| Transcription factor TFIIB cyclin-related protein [Desulfurococcus
fermentans DSM 16532]
Length = 319
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ + LN+ + A R Y AV + +GR E + A+ +YLACR+
Sbjct: 132 LAQAMNELDRLSDILNL--PSYVKEEAARIYRNAVEKGIVRGRSIESIIAATIYLACREM 189
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + + + +N E+ Y L + L I + DP ++ + L LPG
Sbjct: 190 KVPRSLDEITRHTRVNRKEIARCYRLLLRELRIK-----VATTDPVDYVPRIVHGLGLPG 244
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+ A +I+ K +T G+ P+GL AA+Y++A G K ++ +I + + E
Sbjct: 245 QAVKI---AIEIINKAKEQGVTGGKDPAGLAAAAVYIAAEQLGEKRTQKEIAHVAGVTEV 301
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 302 TVRNRYKEL 310
>gi|335436571|ref|ZP_08559364.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334897534|gb|EGM35665.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 323
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ N GR E V + LY A RQ
Sbjct: 135 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVSTASLYAAARQA 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + N + E+ Y Y+ E N+ +K DP+ ++ +F L
Sbjct: 193 GNPRSLDEIDNVSRVEKDEVARTYR------YVVRELNLEVKPADPTSYVPRFASDL--D 244
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ ARD+L + KR+ + +G+ P GL AA+Y ++L K +++++ ++ +I E
Sbjct: 245 LSEEAERHARDLLENAKREGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSEVANISEV 304
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 305 TIRNRYHEL 313
>gi|448575781|ref|ZP_21642061.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|448591050|ref|ZP_21650815.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445730722|gb|ELZ82310.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445734546|gb|ELZ86105.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 316
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 192 RSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--NLSEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 245 VQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>gi|76803221|ref|YP_331316.1| transcription initiation factor TFB 8 [Natronomonas pharaonis DSM
2160]
gi|76559086|emb|CAI50684.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S I VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 142 ALSEIDRMSSALGVPRS--IREVASVIYRRALDDDLIRGRSIEGVATAALYAACRKEGIP 199
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 200 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MEPVDPQKYVPRFCSELEL--SEE 252
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A+DI+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 253 VQSKAKDIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRN 312
Query: 184 RLIE 187
R E
Sbjct: 313 RYQE 316
>gi|242399568|ref|YP_002994993.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
gi|242265962|gb|ACS90644.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
Length = 272
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
IG I +A Y AV +GR E + ++CLY ACR + P L + ++ ++
Sbjct: 98 IGLPRNIREIAALLYRKAVINRLVRGRSIEGMVSACLYAACRIANAPRTLDEIEDFSKVD 157
Query: 77 VYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 135
E+G Y Y+ E N+ L+ +P ++ +F D+L G +K A I+
Sbjct: 158 KKEIGRSY------RYLVRELNLKLRPTNPVDYVVRFGDQL--GVTEKTKRRAMRIVNQA 209
Query: 136 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ +T+G+ P+G+ AA+Y+++L G K ++ ++ ++ + E T+ R E
Sbjct: 210 IKMGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYKEL 262
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ N GR E V + LY A RQ
Sbjct: 140 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVATASLYAAARQA 197
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + I EL Y Y+ E N+ ++ DP ++ +F L
Sbjct: 198 GNPRSLDEIERVSRIGRMELTRTYR------YVVRELNLEVQPADPESYVPRFVSDLEL- 250
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
N++V AR+++ S +++ + +G+ P G+ AA+Y +AL + ++ +I ++ I E
Sbjct: 251 -NEEVSRRARELVDSARKEGVLSGKSPVGIAAAAIYAAALLSNERVTQGEISEVADISEV 309
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 310 TIRNRYKEL 318
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 18/202 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ++ + A Y A+ + GR E V S +Y A RQ
Sbjct: 139 LKQALGEIDRMASALGLPKN--VRETASVIYRRALDDDLLPGRSIEGVATSAVYAAARQT 196
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + I+ E Y + + L + ++ DP ++ +F L
Sbjct: 197 GVPRSLDEVAAVSRIDEMEFKRTYRYIVRELGLE-----IQPADPLSYVSRFASDL---- 247
Query: 121 NKKVCD----TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 176
+ D A+D+L + K + +G+ P GL AA+Y +L K ++S++ + ++
Sbjct: 248 --DISDESERRAKDLLKTAKEQGVHSGKSPVGLAAAAVYAGSLLSNEKVTQSEVSDVANV 305
Query: 177 CEATLMKRLIE-FENTDSGSLT 197
E T+ R E E + G +T
Sbjct: 306 SEVTIRNRYQELLEASQDGGVT 327
>gi|448595941|ref|ZP_21653388.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|445742395|gb|ELZ93890.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 317
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 193 RSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--DLSEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 246 VQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|448424065|ref|ZP_21582191.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448448397|ref|ZP_21591210.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|448478955|ref|ZP_21603961.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|448491995|ref|ZP_21608663.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|448512210|ref|ZP_21616324.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448520833|ref|ZP_21618166.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445682730|gb|ELZ35143.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445692213|gb|ELZ44394.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445694530|gb|ELZ46655.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702969|gb|ELZ54908.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445814813|gb|EMA64771.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445822785|gb|EMA72547.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 193 RSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSLQL--SEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M + L G I +A Y AV +GR E + ++CLY ACR + P
Sbjct: 121 ALSELDRMGSQL--GLPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAP 178
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y Y+A E N+ LK P ++ +F D+L G ++
Sbjct: 179 RTLDEIEDVSKVDKKEIGRSYR------YLARELNLRLKPTSPIDYVIRFGDQL--GISE 230
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A IL +T+G+ P+G+ AA+Y+++L G K ++ ++ ++ + E T+
Sbjct: 231 KTKRRAVKILNQAIEKGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVR 290
Query: 183 KRLIEF 188
R E
Sbjct: 291 NRYKEL 296
>gi|170291077|ref|YP_001737893.1| transcription factor TFIIB cyclin-related protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170175157|gb|ACB08210.1| Transcription factor TFIIB cyclin-related [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 356
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+E A +R ++L + + E + A Y +A KGR + + A+ +Y ACR+
Sbjct: 140 IEPALRKIRDAADSLVLPQ--ETIEDAATLYRMAARAGLVKGRSMDAMVAAVIYAACRRT 197
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + + E+G + L + L I + P F++ +L LP
Sbjct: 198 DVPKTLEEISKFFALEEKEIGRSFRFLFRKLGIQ-----IPPPKPENFVYLIASKLSLP- 251
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++V A I+ KR+ T GR+P G+ AA+Y++ GL ++ ++ + ++ E
Sbjct: 252 --EEVATQAIRIIKIAKRNGATMGREPVGVAAAAVYMACQELGLHRTQRELAQAANVTEV 309
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 310 TVRNRYKEL 318
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY ACRQ P
Sbjct: 143 ALSELDRMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVP 200
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + Y ++ E+G Y +IA E + L P+ ++ +F L G +
Sbjct: 201 RTLDEIATYSRVDRKEIGRTY------RFIARELGLKLLPTSPADYVPRFCAAL--GLSG 252
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + +T+GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+
Sbjct: 253 EVQKKAIEIIKKAEEKELTSGRGPTGVAAAAIYIASILTGERRTQREVAEVAGVTEVTIR 312
Query: 183 KRLIEF 188
R E
Sbjct: 313 NRYKEL 318
>gi|448405176|ref|ZP_21572617.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
gi|445662584|gb|ELZ15349.1| transcription initiation factor TFB [Haloterrigena limicola JCM
13563]
Length = 325
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A++ + +GR E V SCLY CRQ+ P
Sbjct: 143 ALSEIDRMASALGVPRS--VREVASVIYRQALSEDLIRGRSIEGVATSCLYAGCRQEGIP 200
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + + E+G Y YIA E ++ +K DP ++ +F L
Sbjct: 201 RSLEEVTEVSRVGKKEIGRTY------RYIAKELSLEMKPADPKEYVPRFCSDLEVSEEV 254
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K+ A +I+ + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 255 KM--KAIEIIDESAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEVAEVAQVTEVTIR 312
Query: 183 KRLIE 187
R E
Sbjct: 313 NRYQE 317
>gi|294883444|ref|XP_002770943.1| hypothetical protein Pmar_PMAR003232 [Perkinsus marinus ATCC 50983]
gi|239874069|gb|EER02759.1| hypothetical protein Pmar_PMAR003232 [Perkinsus marinus ATCC 50983]
Length = 179
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 24/133 (18%)
Query: 343 DGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASY 402
D ++ SD+ D E++GYL EE K IW + N+ YL E A ++ A K A + +
Sbjct: 67 DDEESISDVSDSEIEGYLLTPEESEAKSAIWHQWNKPYLMEWAIRDEQRKAKKRAEDEAK 126
Query: 403 KNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK--RL 460
+N K +KR + GPA +ALEAT+ L+KK L
Sbjct: 127 RNG----------------------TYKPRKRPVHSTAMGPADSALEATQMALSKKARSL 164
Query: 461 SSKINYDVLEKLF 473
S+++N LE+LF
Sbjct: 165 SNRVNMSALEELF 177
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY ACRQ P
Sbjct: 144 ALSELDRMASALGLPKS--VRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVP 201
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + Y ++ E+G Y +IA E + L P+ ++ +F L G+
Sbjct: 202 RTLDEIATYSRVDRKEIGRTY------RFIARELGLKLMPTSPADYVPRFCAALGLSGD- 254
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
V A +I+ + +T+GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+
Sbjct: 255 -VQKKAIEIIKKAEEKELTSGRGPTGVAAAAIYIASILGGERRTQREVAEVAGVTEVTIR 313
Query: 183 KRLIEF 188
R E
Sbjct: 314 NRYKEL 319
>gi|448503002|ref|ZP_21612866.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693404|gb|ELZ45556.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 317
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 193 RSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASALQL--SEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 17/189 (8%)
Query: 4 AFDDMRQMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 59
A ++ +M +AL NI E+ +V Y AV++N +GR E V A+ LY ACRQ
Sbjct: 152 ALSELDRMASALGLPRNIRETSAVV------YRKAVSKNLIRGRSIEGVAAAALYAACRQ 205
Query: 60 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 206 NGVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFCSGLSLK 260
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ + + E
Sbjct: 261 G--EVQSKAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEV 318
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 319 TIRNRYKEL 327
>gi|448470225|ref|ZP_21600422.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808303|gb|EMA58375.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 317
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 193 RSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASALQL--SEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|222479916|ref|YP_002566153.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452818|gb|ACM57083.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 317
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 193 RSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASALQL--SEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|448492136|ref|ZP_21608730.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445691595|gb|ELZ43779.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 317
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++
Sbjct: 192 RSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSEL--ELSEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 245 VQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVATASLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + I+ EL Y Y+ E N+ +K DP ++ +F L
Sbjct: 196 GNPRSLDEIERVSRIDRMELTRTYR------YVVRELNLEVKPADPESYVPRFVSDL--D 247
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++V AR+++ S +++ + +G+ P G+ AA+Y +AL + ++ ++ ++ +I E
Sbjct: 248 LSEEVSRQARELIESARKEGVLSGKSPVGIAAAAIYAAALLSNERITQGEVSEVANISEV 307
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 308 TIRNRYKEL 316
>gi|110667821|ref|YP_657632.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385803264|ref|YP_005839664.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109625568|emb|CAJ51995.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728756|emb|CCC39917.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 317
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P
Sbjct: 135 ALSEVDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + L+ VDP F+ +F+ L +++
Sbjct: 193 RSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LRPVDPKQFVPRFSSSL--HLSEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|448425078|ref|ZP_21582707.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|448510576|ref|ZP_21615953.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|448522305|ref|ZP_21618428.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445681338|gb|ELZ33772.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445695849|gb|ELZ47948.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445702249|gb|ELZ54207.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 317
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++
Sbjct: 192 RSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 245 VQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>gi|448450737|ref|ZP_21592470.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445811248|gb|EMA61256.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 317
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++
Sbjct: 192 RSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 245 VQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++M ++K+ L + +D +V A Y A+ + +GR + A+CLY ACR
Sbjct: 121 LRQALNEMDKLKDKLAL--ADVVVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNT 178
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D +N +NI ++ Y + + L + + VDP + + +
Sbjct: 179 ETPRTLDDMANGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IADL 231
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A IL K + G+ P G+ AALY+S ++ G S+ +I + E T
Sbjct: 232 SEKSKRKAIIILNKAKDVGMVAGKDPMGIAAAALYLSCISSGESKSQKEISIASGVTEVT 291
Query: 181 LMKR 184
+ R
Sbjct: 292 IRNR 295
>gi|292655630|ref|YP_003535527.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448291763|ref|ZP_21482468.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448540907|ref|ZP_21623828.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549383|ref|ZP_21627988.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555504|ref|ZP_21631544.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|448571045|ref|ZP_21639556.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448585553|ref|ZP_21647946.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|448603114|ref|ZP_21656935.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448623724|ref|ZP_21670081.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|291370098|gb|ADE02325.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445573768|gb|ELY28284.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445709060|gb|ELZ60895.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712431|gb|ELZ64212.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445718249|gb|ELZ69952.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445722963|gb|ELZ74614.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445726253|gb|ELZ77870.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445746310|gb|ELZ97772.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445752252|gb|EMA03679.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 317
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 193 RSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--DLSEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|448482042|ref|ZP_21605256.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445821444|gb|EMA71235.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 317
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S ++ E+G Y + Q L + ++ VDP ++ +F+ L +++
Sbjct: 192 RSLEEISEVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 245 VQSKANEIIETTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>gi|386874734|ref|ZP_10116960.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807357|gb|EIJ66750.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 9/185 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF + MK L G D +V A Y V+ T+GR + ++ LY ACR+
Sbjct: 120 LSKAFTLLHGMKTKL--GVPDNVVESAAYIYRKVVSAKLTRGRTMTSLISASLYAACREN 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ P L D +N N+ L + + L + L Q D S F+ K ++ +
Sbjct: 178 NIPRTLDDIANAGNVERRILSRDLRTIIKKLGLN-----LNQYDTSSFISKISNNM--DL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+K A +IL +++ IT G+ P A+LY+S + +G K S+ + + T
Sbjct: 231 KEKTKRDAFEILKRCEKEQITAGKHPVAQAAASLYISCIMNGEKISQKKFSAESGVSDVT 290
Query: 181 LMKRL 185
+ R+
Sbjct: 291 IRNRV 295
>gi|448454975|ref|ZP_21594377.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445814355|gb|EMA64320.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 345
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P
Sbjct: 168 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIP 225
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 226 RSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL--ELSEE 278
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 279 VQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 338
Query: 184 RLIE 187
R E
Sbjct: 339 RYQE 342
>gi|448317588|ref|ZP_21507138.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445602979|gb|ELY56949.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 310
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 127 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 184
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 185 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 237
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 238 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 297
Query: 184 RLIE 187
R E
Sbjct: 298 RYQE 301
>gi|322369392|ref|ZP_08043957.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
gi|320551124|gb|EFW92773.1| transcription initiation factor TFB [Haladaptatus paucihalophilus
DX253]
Length = 287
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 104 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 161
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + +K VDP ++ +F L +++
Sbjct: 162 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELEL--SEE 214
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 215 VQSKANNIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 274
Query: 184 RLIE 187
R E
Sbjct: 275 RYQE 278
>gi|307192899|gb|EFN75927.1| Transcription factor IIIB 90 kDa subunit [Harpegnathos saltator]
Length = 190
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 79
++ V A FY +A++ T+GR+ QA+C+Y+ CR + +LID S+ L I V+E
Sbjct: 102 NNHCVETAMGFYKMALSYRLTRGRKQAHNQAACVYITCRTERTSHMLIDISDVLQICVHE 161
Query: 80 LGAVYLQLCQVLYI 93
LG Y++ + L+I
Sbjct: 162 LGRTYVKFAKALHI 175
>gi|448528883|ref|ZP_21620263.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710331|gb|ELZ62150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 317
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L + L+ VDP F+ +F L +++
Sbjct: 193 RSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LRPVDPKQFVPRFASSLQL--SEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 305
Query: 184 RLIE 187
R E
Sbjct: 306 RYQE 309
>gi|448322503|ref|ZP_21511973.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445601261|gb|ELY55250.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 310
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 127 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 184
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 185 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 237
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 238 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 297
Query: 184 RLIE 187
R E
Sbjct: 298 RYQE 301
>gi|435848097|ref|YP_007310347.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674365|gb|AGB38557.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 320
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|448445090|ref|ZP_21590145.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445685396|gb|ELZ37750.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 348
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 89/178 (50%), Gaps = 9/178 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 136 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRKEGIP 193
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S+ ++ E+G Y + Q L + ++ VDP ++ +F+ L +++
Sbjct: 194 RSLEEISDVSRVDRKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFSSELEL--SEE 246
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 247 VQSKANEIIETTADQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTI 304
>gi|284165857|ref|YP_003404136.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|336252199|ref|YP_004595306.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|448313767|ref|ZP_21503479.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|448350243|ref|ZP_21539062.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|448362255|ref|ZP_21550866.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|448369894|ref|ZP_21556347.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|448391654|ref|ZP_21566749.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
gi|284015512|gb|ADB61463.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|335336188|gb|AEH35427.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|445597077|gb|ELY51155.1| transcription initiation factor IIB [Natronolimnobius
innermongolicus JCM 12255]
gi|445637750|gb|ELY90898.1| transcription initiation factor IIB [Natrialba taiwanensis DSM
12281]
gi|445648776|gb|ELZ01724.1| transcription initiation factor IIB [Natrialba asiatica DSM 12278]
gi|445650334|gb|ELZ03258.1| transcription initiation factor IIB [Natrialba aegyptia DSM 13077]
gi|445665066|gb|ELZ17744.1| transcription initiation factor IIB [Haloterrigena salina JCM
13891]
Length = 320
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|289579995|ref|YP_003478461.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281233|ref|ZP_21472540.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448352650|ref|ZP_21541431.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|448358870|ref|ZP_21547544.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|289529548|gb|ADD03899.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445579163|gb|ELY33559.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|445641929|gb|ELY95000.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445644550|gb|ELY97563.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 320
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|429192472|ref|YP_007178150.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|448325884|ref|ZP_21515262.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|429136690|gb|AFZ73701.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|445613976|gb|ELY67661.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 320
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|397772845|ref|YP_006540391.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448337167|ref|ZP_21526249.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|448340531|ref|ZP_21529502.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|448346310|ref|ZP_21535196.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|448400256|ref|ZP_21571323.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|397681938|gb|AFO56315.1| transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445626513|gb|ELY79856.1| transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629964|gb|ELY83234.1| transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445632899|gb|ELY86105.1| transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445667796|gb|ELZ20436.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 320
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|433590946|ref|YP_007280442.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448334479|ref|ZP_21523654.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|448385421|ref|ZP_21563927.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305726|gb|AGB31538.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445619811|gb|ELY73328.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445656916|gb|ELZ09748.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 320
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|14195251|sp|Q9P9I7.1|TF2B_METTL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|6735522|emb|CAB69073.1| archaeal transcription factor B [Methanothermococcus
thermolithotrophicus]
Length = 339
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLTPTNPIDYVPRFASELKLPG---EVESKAISILQKANEKGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|48478412|ref|YP_024118.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431060|gb|AAT43925.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 304
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G +I A Y AV RN +GR E + + +Y ACRQ + P L + S +IN
Sbjct: 131 LGIPKDIKESAALIYRKAVERNLIRGRSIESIVCAAIYAACRQVNIPRTLDEISKAADIN 190
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
++G Y L + L + LK P ++ +F ++L +K V + +I+ +
Sbjct: 191 KKKIGKAYRHLAKELKLN-----LKPTTPYSYVSQFCNKL--NLDKDVIIKSEEIIRRVN 243
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
I+ G+ P+G+ AA+Y++A+ G ++ +I K+ + E T+ R E
Sbjct: 244 ETGISAGKGPTGVAAAAIYIAAIISGKPKTQKEISKVSGVTEVTIRNRYKEI 295
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 4 AFDDMRQMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 59
A ++ +M +AL NI E+ +V Y AV +N +GR E V A+ LY ACRQ
Sbjct: 152 ALSELDRMASALGLPRNIRETSAVV------YRKAVTKNLIRGRSIEGVAAAALYAACRQ 205
Query: 60 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y + + L + L P ++ +F L
Sbjct: 206 NGVPRTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LMPTSPIDYVPRFCSGLNLK 260
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ + + E
Sbjct: 261 G--EVQSRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEV 318
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 319 TIRNRYKEL 327
>gi|300712183|ref|YP_003737997.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|448295872|ref|ZP_21485935.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|299125866|gb|ADJ16205.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
gi|445583301|gb|ELY37633.1| transcription initiation factor TFB [Halalkalicoccus jeotgali B3]
Length = 323
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACR++ P
Sbjct: 140 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATAALYAACRKEGIP 197
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 198 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 250
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 251 VQSKANEIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 310
Query: 184 RLIE 187
R E
Sbjct: 311 RYQE 314
>gi|448330825|ref|ZP_21520101.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445610661|gb|ELY64430.1| transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 320
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|448306239|ref|ZP_21496148.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445598653|gb|ELY52708.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 320
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|126289989|ref|XP_001364012.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Monodelphis
domestica]
Length = 681
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 341 ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEA 400
+ DG + + IDD E+D Y+ NE E K +W + + +Y++EQ KEA A K
Sbjct: 446 SGDGELDLNGIDDSEIDRYILNENEAQIKAELWMKEHADYVKEQKEKEARIAKEK----- 500
Query: 401 SYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRL 460
EL KE + K++++ + A TA EA +ML +K++
Sbjct: 501 -------------ELGIY---------KEHKPKKSSKKREPIQASTAGEAIEKMLEQKKI 538
Query: 461 SSKINYDVLEKL 472
SSKINY+VL L
Sbjct: 539 SSKINYNVLRDL 550
>gi|448609114|ref|ZP_21660393.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|448615057|ref|ZP_21664085.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445747491|gb|ELZ98947.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445753144|gb|EMA04563.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 316
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 192 RSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--ELSEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 245 VQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>gi|407465789|ref|YP_006776671.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048977|gb|AFS83729.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 9/191 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF + MK L I SD +V A Y V+ T+GR + ++ LY ACR+
Sbjct: 120 LSKAFTLLHGMKTKLGI--SDNVVENAAYIYRKVVSAKLTRGRTMASLISASLYAACREN 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ P L D ++ N+ L + + L + L Q D + F+ K ++ +
Sbjct: 178 NIPRTLDDIADAGNVERRILSRDLRTIIKKLGMN-----LNQYDTTSFISKISNNM--NL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+K A +IL +++ IT G+ P A+LY+S + +G K S+ + + T
Sbjct: 231 KEKTKRDAFEILRRCEKEQITAGKHPVAQAAASLYISCIMNGEKISQKKFSVESGVSDVT 290
Query: 181 LMKRLIEFENT 191
+ R I + T
Sbjct: 291 IRNRTILIKKT 301
>gi|408403989|ref|YP_006861972.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364585|gb|AFU58315.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 285
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L +G D ++ A Y A+ + +GR + A+ LY ACR
Sbjct: 103 QAFSELDRLKDKLAVG--DAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTET 160
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D +N NI ++ Y L + L + + VDP + + + G ++
Sbjct: 161 PRTLKDIANASNIKKKDVARCYRLLIRELDLK-----MPVVDPVKCVARIASK--AGLSE 213
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A +IL + I+ G+ P GL AALYV+ + +G ++ D+ + + E T+
Sbjct: 214 KTKRKALEILKKAEEGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIR 273
Query: 183 KR 184
R
Sbjct: 274 NR 275
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++M ++K+ L + +D +V A Y A+ + +GR + + A+CLY +CR
Sbjct: 119 LRQALNEMDKLKDKLAL--TDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A IL K+ + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAVAILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVT 289
Query: 181 LMKR 184
+ R
Sbjct: 290 IRNR 293
>gi|332028617|gb|EGI68652.1| Transcription factor IIIB 90 kDa subunit [Acromyrmex echinatior]
Length = 182
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
L +G + + + FY +A+ + T+GR+ QA+C+Y+ CR + +LID S+ L
Sbjct: 96 CLQLGLNQNCIETSVNFYKMALCYHLTRGRKQAHNQAACVYITCRIEKTEHMLIDISDVL 155
Query: 74 NINVYELGAVYLQLCQVLYI 93
+I V+ELG YL+ L I
Sbjct: 156 HICVHELGRTYLRFTTALRI 175
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ N GR E V + LY A RQ
Sbjct: 137 LKQALGEIERMASALGLPEN--VRETASVIYRRALDDNLLPGRSIEGVSTAALYTAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ EL Y YI E N+ +K DP ++ +F L G
Sbjct: 195 GIPRSLDEIERVSRVDRMELTRTYR------YIIRELNLEVKPADPESYIPRFVSDL--G 246
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ +V AR+++ + + D + +G+ P GL AA+Y +AL K +++D+ ++ I E
Sbjct: 247 LSDEVERRARELIEAARGDGLLSGKSPVGLAAAAVYAAALLCNEKVTQNDVSEVADISEV 306
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 307 TIRNRYKEL 315
>gi|433639225|ref|YP_007284985.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448377483|ref|ZP_21560179.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
gi|433291029|gb|AGB16852.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445655427|gb|ELZ08272.1| transcription initiation factor IIB [Halovivax asiaticus JCM 14624]
Length = 320
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|448302993|ref|ZP_21492943.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594000|gb|ELY48167.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 310
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 127 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 184
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 185 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 237
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 238 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 297
Query: 184 RLIE 187
R E
Sbjct: 298 RYQE 301
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++M ++K+ L + +D ++ A Y A+ + +GR + + A+CLY +CR
Sbjct: 131 LRQALNEMDKLKDKLAL--TDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 189 ETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 241
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A IL K+ + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 242 SEKSKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVT 301
Query: 181 LMKR 184
+ R
Sbjct: 302 IRNR 305
>gi|119873155|ref|YP_931162.1| transcription initiation factor IIB [Pyrobaculum islandicum DSM
4184]
gi|189029860|sp|A1RV37.1|TF2B_PYRIL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|119674563|gb|ABL88819.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum islandicum
DSM 4184]
Length = 333
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 16 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 75
++G V A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 157 SMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKA 216
Query: 76 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 134
+ E+ Y L + E NV + DP +++ + ++L G +V TA +IL
Sbjct: 217 SRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG--EVVKTAIEILQK 268
Query: 135 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191
K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R E T
Sbjct: 269 AKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTVRNRYKELAKT 325
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++M ++K+ L + +D ++ A Y A+ + +GR + + A+CLY +CR
Sbjct: 119 LRQALNEMDKLKDKLAL--TDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A IL K+ + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAIAILNEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVT 289
Query: 181 LMKR 184
+ R
Sbjct: 290 IRNR 293
>gi|159111980|ref|XP_001706220.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
gi|29293103|gb|AAO72320.1| transcription factor IIB-related protein [Giardia intestinalis]
gi|157434314|gb|EDO78546.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
Length = 476
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 22 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 81
E+V A +Y + T+GRR + A+ LY+ RQ + LLID+++ LN++V+ L
Sbjct: 88 ELVRKASDYYANCLRDKATRGRRNNLLAAALLYIVGRQHNLSHLLIDYADALNVSVFTLN 147
Query: 82 AVYLQ--LCQV---LYIADESNVLKQVDPSIFLHKFTD--------RLLPGGNKKVCDTA 128
Y+Q L Q L D ++L + SI +FT L + D
Sbjct: 148 K-YIQPFLRQYNIKLPYQDLESLLPRFVDSILKEEFTTAFQDNRDCMLFANIHITSVDQL 206
Query: 129 RD--------ILASMKRDWITTGRKPSGLCGAALYVS--ALTHGLKFSKSDIVKIVHICE 178
R+ IL + I TGR PSGL GA+++V+ L +G+ + I + V
Sbjct: 207 REHTLVVSKYILKASTAINIHTGRLPSGLLGASIFVALKLLNYGIPIHR--ISRCVFCSP 264
Query: 179 ATLMKRLIEFENTDS-GSLTIEDFMARKKELHEGVAANLPN 218
T+ +RL E ++++ LTI D + EGV P+
Sbjct: 265 DTIARRLQEMQSSELFAKLTIGDVLRNVDLDLEGVDVRPPS 305
>gi|448732994|ref|ZP_21715240.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
gi|445803327|gb|EMA53624.1| transcription initiation factor TFB 2 [Halococcus salifodinae DSM
8989]
Length = 323
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 16/196 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + +S + A Y A+ N GR E V + L++A RQ
Sbjct: 133 LKQALSEIERMSSALGLPKS--VRETAGVIYRRALEENLLPGRSVEGVSTAALHIASRQA 190
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
+ P L + I + Y Y+A E + L DP +L +F L
Sbjct: 191 NIPRSLDTLTEVSRIGKLPITRTYQ------YVARELEINLPPADPLEYLPRFVSAL--D 242
Query: 120 GNKKVCDTARDILASMKRDWIT--TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+ +V +R++L ++ D + +G+ P GL AA+Y +L K ++ + ++ I
Sbjct: 243 RSDEVERRSRELLETVSEDEPSYLSGKNPVGLAAAAVYAGSLLCNEKVTQKAVGEVADIS 302
Query: 178 EATLMKR---LIEFEN 190
E T+ R L+EF++
Sbjct: 303 EVTIRNRYKELLEFQD 318
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 95/186 (51%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + +S + A Y A+ +N +GR E V A+ LY ACRQ P
Sbjct: 144 ALSELDRMASALGLPKS--VRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAACRQAGVP 201
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + Y ++ E+G Y +IA E + L P+ ++ +F L G +
Sbjct: 202 RTLDEIAQYSRVDRKEIGRTY------RFIARELGLKLMPTSPADYVPRFCAAL--GLSG 253
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + +T+GR P+G+ AA+Y++++ G + ++ ++ ++ + E T+
Sbjct: 254 EVQRKAIEIIKKAEERELTSGRGPTGVAAAAIYIASILCGERRTQREVAEVAGVTEVTIR 313
Query: 183 KRLIEF 188
R E
Sbjct: 314 NRYKEL 319
>gi|379003108|ref|YP_005258780.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
gi|375158561|gb|AFA38173.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
Length = 348
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++K+++ G V A Y A+ + +GR E + A+ LY+ACR
Sbjct: 161 QAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRM 218
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP +++ + ++L G
Sbjct: 219 PRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG- 271
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V A DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 272 -EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 330
Query: 182 MKRLIEF 188
R E
Sbjct: 331 RNRYKEL 337
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 151 ALSELDRMASAL--GLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 208
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 209 RTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG-- 260
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 261 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVAEVAGVTEVTIR 320
Query: 183 KRLIEF 188
R E
Sbjct: 321 NRYKEL 326
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A++ N GR E V + LY A RQ
Sbjct: 148 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATASLYAAARQV 205
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L +F+ + EL Y + + L + ++ DP+ ++ +F RL
Sbjct: 206 GNPRSLDEFTAVSRVEKMELTRTYRYVIRELGLR-----VQPADPTSYVPRFASRL--DL 258
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ AR++L + IT+G+ P GL AA+Y +AL K ++S + + + E T
Sbjct: 259 SEETERRARELLDDAASEGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSGVADVSEVT 318
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 319 IRNRYKEL 326
>gi|145592173|ref|YP_001154175.1| transcription initiation factor IIB [Pyrobaculum arsenaticum DSM
13514]
gi|189029859|sp|A4WMA6.1|TF2B_PYRAR RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|145283941|gb|ABP51523.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
arsenaticum DSM 13514]
Length = 333
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++K+++ G V A Y A+ + +GR E + A+ LY+ACR
Sbjct: 146 QAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRM 203
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP +++ + ++L G
Sbjct: 204 PRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG- 256
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V A DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 257 -EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 182 MKRLIEF 188
R E
Sbjct: 316 RNRYKEL 322
>gi|399574686|ref|ZP_10768445.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240518|gb|EJN61443.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 317
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+
Sbjct: 132 LQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQE 189
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 190 GIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--EL 242
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T
Sbjct: 243 SEEVQAKAVEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVT 302
Query: 181 LMKRLIE 187
+ R E
Sbjct: 303 IRNRYQE 309
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++M ++K+ L + +D +V A Y A+ + +GR + + A+CLY +CR
Sbjct: 119 LRQALNEMDKLKDKLAL--TDSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A IL K + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAIVILNQAKEIGMVAGKDPMGIAAAALYLACISTGETKSQKDISIASGVTEVT 289
Query: 181 LMKR 184
+ R
Sbjct: 290 IRNR 293
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 19/190 (10%)
Query: 4 AFDDMRQMKNAL----NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQ 59
A ++ +M +AL NI E+ +V Y AV +N +GR E V A+ LY ACRQ
Sbjct: 151 ALSELDRMASALGLPRNIRETSAVV------YRKAVTKNLIRGRSIEGVAAAALYAACRQ 204
Query: 60 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLP 118
P L + + ++ E+G Y +I+ E + L P ++ +F L
Sbjct: 205 NGVPRTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLMPTSPIDYVPRFCSGLSL 258
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
G +V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ + + E
Sbjct: 259 KG--EVQSRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTE 316
Query: 179 ATLMKRLIEF 188
T+ R E
Sbjct: 317 VTIRNRYKEL 326
>gi|383621854|ref|ZP_09948260.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|448702704|ref|ZP_21700137.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
gi|445777265|gb|EMA28235.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 320
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++M ++K+ L + +D +V A Y A+ + +GR + + A+CLY +CR
Sbjct: 119 LRQALNEMDKLKDKLAL--TDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDVAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A IL K+ + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAVVILEQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVT 289
Query: 181 LMKR 184
+ R
Sbjct: 290 IRNR 293
>gi|407463400|ref|YP_006774717.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407047022|gb|AFS81775.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 306
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 9/191 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF + MK L I D +V A Y V+ T+GR + ++ LY +CR+
Sbjct: 120 LSKAFTLLHSMKTKLGI--PDNVVENAAYIYRKIVSAKLTRGRTMASLISASLYASCREN 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ P L D +N N+ L + + L + L Q D S F+ K ++ +
Sbjct: 178 NIPRTLDDIANAGNVERRILSRDLRTIIKKLGLN-----LNQYDTSSFISKISNNM--NL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+K A +IL +++ IT G+ P A+LY+S + +G K S+ + + T
Sbjct: 231 KEKTKRGAFEILKLCEKEQITAGKHPVAQAAASLYISCIMNGEKISQKKFSVEAGVSDVT 290
Query: 181 LMKRLIEFENT 191
+ R + T
Sbjct: 291 IRNRAVLIRKT 301
>gi|407462181|ref|YP_006773498.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045803|gb|AFS80556.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 297
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G S+ + + A +GR ++ + A+ LY++CRQ P L D S NI
Sbjct: 127 LGISENTIEGTSSLFRRAQKHQLIRGRSSDDLMAAALYVSCRQTMTPRSLEDISEIANIT 186
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
+LQ + I + VL Q + S FL K ++ L G ++K A IL+ ++
Sbjct: 187 -----KKHLQKSVRVLINEFGLVLPQYNISSFLTKLSNDL--GFSEKTKRYALKILSDVE 239
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
+ G+ P G A+LY++++ G S+S KI I TL R
Sbjct: 240 KCGSAAGKNPIGQAAASLYLASMLMGENISQSTFSKISGISTVTLRNR 287
>gi|448439550|ref|ZP_21588114.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691084|gb|ELZ43279.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 346
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V + LY ACRQ+ P
Sbjct: 135 ALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVSTAALYAACRQEGIP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ + E+G Y + Q L + LK VDP F+ +F L +++
Sbjct: 193 RSLDEVADVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASSL--ELSEE 245
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 246 VQSKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTI 303
>gi|448336058|ref|ZP_21525172.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445630482|gb|ELY83744.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 176
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Query: 11 MKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 70
M +AL + S + VA Y A++ + +GR E V SCLY CRQ+ P L + +
Sbjct: 1 MASALGVPRS--VREVASVIYRQALSNDLIRGRSIEGVATSCLYAGCRQEGIPRSLDEVT 58
Query: 71 NYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 129
+ E+G Y YIA E ++ +K DP ++ +F L G K+ A
Sbjct: 59 EVSRVGKKEIGRTY------RYIAKELSLEMKPADPKEYVPRFCSDLEVGEEVKM--KAI 110
Query: 130 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
+I+ + +G+ P+G AA+Y ++L K ++ +I ++ + E T+ R
Sbjct: 111 EIIDESAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQKEIAEVAQVTEVTIRNR 165
>gi|448298665|ref|ZP_21488693.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445591335|gb|ELY45541.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 320
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 195 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MRPVDPKKYVPRFCSELEL--SEE 247
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 248 VQTKANEIIEKTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 307
Query: 184 RLIE 187
R E
Sbjct: 308 RYQE 311
>gi|448377625|ref|ZP_21560321.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
gi|445655569|gb|ELZ08414.1| transcription factor TFIIB cyclin-like protein [Halovivax asiaticus
JCM 14624]
Length = 323
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 135 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S ++ EL Y + + L + +K DP ++ +F L
Sbjct: 193 GTPRSLDEISQVSRVDRMELTRTYRYIVRELSLE-----VKPADPEHYVPRFISDL--DL 245
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ T+R++L S + D + +G+ P GL AA+Y +AL K +++++ ++ +I E T
Sbjct: 246 SEETERTSRELLESARGDGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVANISEVT 305
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 306 IRNRYKEL 313
>gi|433639108|ref|YP_007284868.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|433290912|gb|AGB16735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
Length = 323
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 135 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S ++ EL Y + + L + +K DP ++ +F L
Sbjct: 193 GTPRSLDEISQVSRVDRMELTRTYRYIVRELSLE-----VKPADPEHYVPRFISDL--DL 245
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ T+R++L S + D + +G+ P GL AA+Y +AL K +++++ ++ +I E T
Sbjct: 246 SEETERTSRELLESARGDGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVANISEVT 305
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 306 IRNRYKEL 313
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 175 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEISRVDRKEIGRTYRFISR 234
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 148
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 235 ELKIR-----LAPTNPIDYVPRFASELKLPG---EVESKAIAILQKANEKGLTSGRGPTG 286
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 287 VAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 326
>gi|297619914|ref|YP_003708019.1| transcription factor TFIIB cyclin-like protein [Methanococcus
voltae A3]
gi|297378891|gb|ADI37046.1| Transcription factor TFIIB cyclin-related protein [Methanococcus
voltae A3]
Length = 337
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 176 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 231
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL + +T+GR P+
Sbjct: 232 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILKDAGKKGLTSGRGPT 286
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 287 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 327
>gi|253743265|gb|EES99717.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia intestinalis
ATCC 50581]
Length = 477
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 29/222 (13%)
Query: 22 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 81
E+V A +Y + T+GRR + A+ LY+ RQ + LLID+++ LN++V+ L
Sbjct: 88 ELVRKASDYYANCLRDKATRGRRNNLLAAALLYIVGRQHNLSHLLIDYADALNVSVFTLN 147
Query: 82 AVYLQ--LCQV---LYIADESNVLKQVDPSIFLHKFTDRL------LPGGNKKVCDT--- 127
Y+Q L Q L D ++L + SI +FT + N + T
Sbjct: 148 K-YIQPFLRQYNIKLPYQDLESLLPRFVDSILKEEFTTVFQDNRDCMLFANIHIASTDQL 206
Query: 128 -------ARDILASMKRDWITTGRKPSGLCGAALYVS--ALTHGLKFSKSDIVKIVHICE 178
++ IL + I TGR PSGL GA+++V+ L +G+ + + + V
Sbjct: 207 REHTLAVSKYILKASIAINIHTGRLPSGLLGASIFVALKLLNYGIPIHR--VARCVFCSP 264
Query: 179 ATLMKRLIEFENTDSGS-LTIEDFMARKKELH-EGVAANLPN 218
T+ +RL E ++++ + +TI D + R EL+ EGV P+
Sbjct: 265 DTIARRLQEMQSSELFTKITIGDVL-RNVELNIEGVDIRPPS 305
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + + + A Y AV +N +GR E V A+ LY ACRQ + P
Sbjct: 155 ALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCNVP 212
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + ++ E+G Y + + L + L P ++ +F L G +
Sbjct: 213 RTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPGDYVPRFCSGL--GLKGE 265
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ + + E T+
Sbjct: 266 VQSRAMEILKQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVADVAGVTEVTIRN 325
Query: 184 RLIEF 188
R E
Sbjct: 326 RYKEL 330
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 151 ALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 208
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 209 RTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG-- 260
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 261 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 320
Query: 183 KRLIEF 188
R E
Sbjct: 321 NRYKEL 326
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 4 AFDDMRQMKNALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A ++ M + LN+ ES VH R Y AV + +GR E + ++ LY+ R++
Sbjct: 168 ALSELNSMISNLNLPES---VHEEVARLYEKAVDQGLVRGRSMESIISALLYIVARKQGT 224
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGN 121
P L + S+ I E+G Y Y+A E + + P ++ +F +L G
Sbjct: 225 PRTLDEISDASGIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFAGKLQLSG- 277
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V AR+IL + + +G+ P+GL AALY++A+ G K ++ ++ +V + E T+
Sbjct: 278 -EVQARARNILEEAREKDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTI 336
Query: 182 MKR 184
R
Sbjct: 337 RNR 339
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 9/194 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ
Sbjct: 138 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 196 GTPRSLDEISAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 248
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ + +I E T
Sbjct: 249 SDEAERRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVT 308
Query: 181 LMKRLIEFENTDSG 194
+ R E + G
Sbjct: 309 IRNRYHELLEAEDG 322
>gi|374325545|ref|YP_005083742.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
gi|356640811|gb|AET31490.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
Length = 333
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++++++ I + A Y A+ + +GR E + A+ LY+ACR
Sbjct: 146 QAAQELERLRSSMGIPRP--CIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKM 203
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP +++ + ++L G
Sbjct: 204 PRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPILYISRIAEQLKLSG- 256
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V +A DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 257 -EVIKSAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 182 MKRLIEF 188
R E
Sbjct: 316 RNRYKEL 322
>gi|389846997|ref|YP_006349236.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244303|gb|AFK19249.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 276
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+
Sbjct: 91 LQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQE 148
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 149 GIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--EL 201
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T
Sbjct: 202 SEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVT 261
Query: 181 LMKRLIE 187
+ R E
Sbjct: 262 IRNRYQE 268
>gi|257051172|ref|YP_003129005.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256689935|gb|ACV10272.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ N GR E V + LY A RQ
Sbjct: 135 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDENLLPGRSIEGVATASLYAAARQA 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + N + E+ Y + + L + +K DP+ ++ +F L
Sbjct: 193 GNPRSLDEIDNVSRVEKDEVARTYRYVVRELKLE-----VKPADPTSYVPRFASDLEL-- 245
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++ ARD+L + K++ + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 246 TEEAERHARDLLENAKQEGVHSGKSPVGLAAAAIYAASLLANEKVTQNEVSEVANISEVT 305
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 306 IRNRYHEL 313
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 149 ALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 206
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 207 RTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG-- 258
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 259 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 318
Query: 183 KRLIEF 188
R E
Sbjct: 319 NRYKEL 324
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L
Sbjct: 195 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASDL--DL 247
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 248 SEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVANISEVT 307
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 308 IRNRYHEL 315
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 152 ALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 209
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 210 RTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLQLKG-- 261
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 262 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 321
Query: 183 KRLIEF 188
R E
Sbjct: 322 NRYKEL 327
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++M ++K+ L + +D ++ A Y A+ + +GR + + A+CLY +CR
Sbjct: 119 LRQALNEMDKLKDKLAL--TDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNT 176
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D + +NI ++ Y + + L + + VDP + + +
Sbjct: 177 ETPRTLDDIAKGINIRRKDVARCYRLIFRELELK-----MPVVDPVKGVSRIAS--IAEL 229
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A IL K + G+ P G+ AALY++ ++ G S+ DI + E T
Sbjct: 230 SEKSKRKAIAILNQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVT 289
Query: 181 LMKR 184
+ R
Sbjct: 290 IRNR 293
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 152 ALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 209
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 210 RTLDEVAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG-- 261
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 262 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 321
Query: 183 KRLIEF-ENTDS 193
R E E DS
Sbjct: 322 NRYKELAEKLDS 333
>gi|257052295|ref|YP_003130128.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|335441176|ref|ZP_08561897.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|256691058|gb|ACV11395.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|334888347|gb|EGM26646.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 321
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 138 ALSEIDRMASALGVPRS--VREVASVIYRRALDDDLIRGRSIEGVATSALYAACRKEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 196 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELEL--SEE 248
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 249 VQSKANEIIETTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 308
Query: 184 RLIE 187
R E
Sbjct: 309 RYQE 312
>gi|409079539|gb|EKM79900.1| hypothetical protein AGABI1DRAFT_113149 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192509|gb|EKV42445.1| hypothetical protein AGABI2DRAFT_195784 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 83/184 (45%), Gaps = 11/184 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF D+ + ++ ++ I +AK+ Y + +G+ + V A+C+++ACRQ P
Sbjct: 135 AFRDISSWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQAHVP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA-----DESNVLKQVDPSIFLHKFTDRL-L 117
+ +++ LG Y L Q ++ + ++ P L ++ + L L
Sbjct: 193 RTFREICTLTHVSKKVLGQCYKALEQAFNLSPGATHNSNSSSTPTGPENLLVRYCNHLDL 252
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
P + +C DI+ + ++ I GR P + G A+Y + L G S DI + +
Sbjct: 253 PANVQTICS---DIIVTARKYGIADGRSPVSIAGGAIYFTCLLLGKSKSVRDISAVAGVS 309
Query: 178 EATL 181
E T+
Sbjct: 310 EGTI 313
>gi|352682668|ref|YP_004893192.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
gi|269990954|emb|CAP46908.1| transcription initiation factor IIB [Thermoproteus tenax Kra 1]
gi|350275467|emb|CCC82114.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
Length = 332
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++K+++ G V A Y A+ + +GR E + A+ LY+ACR
Sbjct: 145 QAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMLKT 202
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP +++ + ++L G+
Sbjct: 203 PRPLDELIRYTKASRREVARCYRLLLR------ELNVRVPISDPVLYISRVAEQLKLTGD 256
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
V TA DI+ K+ +T G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 257 --VVKTAIDIINRAKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTV 314
Query: 182 MKRLIEF 188
R E
Sbjct: 315 RNRYKEL 321
>gi|150402961|ref|YP_001330255.1| transcription initiation factor IIB [Methanococcus maripaludis C7]
gi|189029856|sp|A6VI28.1|TF2B_METM7 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150033991|gb|ABR66104.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C7]
Length = 339
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 149 ALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 206
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + ++ E+G Y + + L + L P ++ +F L G +
Sbjct: 207 RTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLTLKG--E 259
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 260 VQSRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRN 319
Query: 184 RLIEF 188
R E
Sbjct: 320 RYKEL 324
>gi|448304716|ref|ZP_21494652.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445590097|gb|ELY44318.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 321
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A++ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASALGVPRS--VREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S ++ E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 196 RSLDEVSAVSRVDRMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL--DLSEE 248
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+
Sbjct: 249 VQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRN 308
Query: 184 RLIE 187
R E
Sbjct: 309 RYQE 312
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G + A Y AV +N +GR E V A+ LY ACRQ + P
Sbjct: 150 ALSELDRMASAL--GLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCNVP 207
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 208 RTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG-- 259
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 260 EVQSRAVEILRQAGEKELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 319
Query: 183 KRLIEF 188
R E
Sbjct: 320 NRYKEL 325
>gi|159905293|ref|YP_001548955.1| transcription initiation factor IIB [Methanococcus maripaludis C6]
gi|226703638|sp|A9A8Q0.1|TF2B_METM6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|159886786|gb|ABX01723.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C6]
Length = 339
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 10/197 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A RQ
Sbjct: 136 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQA 193
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 194 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 246
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 247 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 306
Query: 181 LMKRLIE-FENTDSGSL 196
+ R E E DS +L
Sbjct: 307 IRNRYHELLEAEDSVAL 323
>gi|344212211|ref|YP_004796531.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448671788|ref|ZP_21687593.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343783566|gb|AEM57543.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445764924|gb|EMA16067.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 324
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L
Sbjct: 195 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASDL--DL 247
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 248 SEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVANISEVT 307
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 308 IRNRYHEL 315
>gi|170091576|ref|XP_001877010.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648503|gb|EDR12746.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 349
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++ACRQ P
Sbjct: 135 AFRDIGSWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD-----PSIFLHKFTDRL-L 117
+ + +++ LG Y L Q + ++ + P L ++ + L L
Sbjct: 193 RTFREICDLTHVSKKILGQCYKALEQAFNLTPGASAAHASNNPATGPENLLVRYCNHLDL 252
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
P + +C DI+ + ++ I GR P + G A+Y + G S DI + +
Sbjct: 253 PPNVQSICS---DIIVAARKHGIADGRSPVSIAGGAIYFTCYLLGKNKSPRDISAVAGVS 309
Query: 178 EATLMKRLI 186
E T+ RL+
Sbjct: 310 EGTI--RLV 316
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 131 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQA 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ E+ Y Y+ E N+ ++ DP ++ +F L G
Sbjct: 189 GTPRSLDELETVSRVDKDEISRTYR------YVVRELNLEIEPADPEQYVPRFASEL--G 240
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
N + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E
Sbjct: 241 LNDESERHARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEV 300
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 301 TIRNRYHEL 309
>gi|433441074|ref|ZP_20408566.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
gi|432187300|gb|ELK44608.1| transcription initiation factor TFB, partial [Haloferax sp.
BAB2207]
Length = 208
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACRQ+
Sbjct: 23 LQFALSEIDRMASALGVPRS--VREVASVIYRRALNEDLIRGRSIEGVATSALYAACRQE 80
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+G Y + Q L + LK VDP F+ +F L
Sbjct: 81 GIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLE-----LKPVDPKQFVPRFASAL--DL 133
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V A +I+ + +G+ P+G AA+Y ++L K ++ ++ + + E T
Sbjct: 134 SEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVT 193
Query: 181 LMKRLIE 187
+ R E
Sbjct: 194 IRNRYQE 200
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 140 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQA 197
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ E+ Y Y+ E N+ ++ DP ++ +F L G
Sbjct: 198 GTPRSLDELETVSRVDKDEISRTYR------YVVRELNLEIEPADPEQYVPRFASEL--G 249
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
N + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E
Sbjct: 250 LNDESERHARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEV 309
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 310 TIRNRYHEL 318
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +M ++K+ L + +D ++ A Y A+ R KGR + A+C+Y ACR
Sbjct: 125 LRQALSEMDKLKDKLTL--TDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYAACRIT 182
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D + +NI ++ Y + + L + + DP + + L G
Sbjct: 183 ETPRTLDDIAEGINIKRKDVARSYRIIFRELDLK-----IPVADPVKGVSRIAS--LAGL 235
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ A +L K+ + G+ P G+ AALY++ ++ G ++ +I + E T
Sbjct: 236 GEATKRKALILLNKAKKIGMVAGKDPMGIAAAALYLACISTGGNKTQKEISIASGVTEVT 295
Query: 181 LMKRLIEFE 189
+ R + +
Sbjct: 296 IRNRCVGLK 304
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ +M A N+G ++ A Y AV N +GR E V A+ +Y ACR
Sbjct: 124 LSQALQELERM--ASNLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRML 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S I E+G VY + + L + + P ++ +F +L G
Sbjct: 182 GIPRTLEEISTVTRIKKREIGRVYRIMSRTLKLN-----IYPTKPEDYIDRFCSKLKLSG 236
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K A +I+ + I +GR P+G+ AA+Y++A+ G + ++ ++ + + E T
Sbjct: 237 EVKT--KAYEIIKMARERDIISGRGPTGVAAAAIYIAAILMGERRTQREVADVAGVTEVT 294
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 295 IRNRYKEL 302
>gi|299748194|ref|XP_002911260.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|298407858|gb|EFI27766.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 346
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 25/216 (11%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF D+ + ++ ++ I +AK+ Y A +G+ E V A+C+++ACR+ P
Sbjct: 133 AFRDISNWCDQFSLPKT--ISDIAKQLYKRADEEKLLRGKPVEAVIAACIFIACRKAHVP 190
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV----LKQVDPSIFLHKFTDRL-LP 118
+ N ++ LG Y L Q L ++ ++ P L ++ + L LP
Sbjct: 191 RTFREICNLTRVSKKMLGQCYKALEQSLNLSGPESMPLANTPTTGPEKLLVRYCNHLDLP 250
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
+ +C +I+ + + I GR P + G A+Y + L G +I + + E
Sbjct: 251 ANVQAICS---EIIVNARNHGIADGRSPISIAGGAIYFTCLLLGKPKPIREISAVAGVSE 307
Query: 179 ATL---------------MKRLIEFENTDSGSLTIE 199
T+ K IE D LTIE
Sbjct: 308 GTIKLVYRLYYNDREKLVKKEWIESGKADLSRLTIE 343
>gi|268326216|emb|CBH39804.1| transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M ALN+ ++ Y A R+ KGR E++ ++ LY+ CRQ P
Sbjct: 102 ALGEIDRMACALNLPR--DLRETTSLLYRKAAKRSLIKGRSIEELASAMLYITCRQYGIP 159
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + + ++ Y+ L L I L DP+ ++ +F L G
Sbjct: 160 RTLKEIAAVSRMPLKKIRRAYIFLLHKLEIK-----LAPADPACYIPRFCSEL--GLRDV 212
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
+ + A +I++ K G P+G AA+Y+++L G D+ K+ T+
Sbjct: 213 IRERAIEIVSEDKETIAAKGWTPTGTAAAAIYLASLLSGESVEVKDMAKVAGTTPVTIQN 272
Query: 184 RLIEF 188
R E
Sbjct: 273 RYKEL 277
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 195 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 247
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 248 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 307
Query: 181 LMKR---LIEFENT 191
+ R L+E E++
Sbjct: 308 IRNRYHELLEAEDS 321
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 195 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 247
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 248 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 307
Query: 181 LMKR---LIEFENT 191
+ R L+E E++
Sbjct: 308 IRNRYHELLEAEDS 321
>gi|393246466|gb|EJD53975.1| cyclin-like protein [Auricularia delicata TFB-10046 SS5]
Length = 349
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 25/218 (11%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ AF ++ M ++ ++ +S I +AK+ Y A + + + V A+C+++ACRQ
Sbjct: 131 IQTAFREISNMCDSFSLPKS--ISDIAKQLYKRADEEKLLRAKSLDAVIAACIFIACRQA 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN-------VLKQVDPSIFLHKFT 113
P + + +G Y L Q +A +N ++ P L ++
Sbjct: 189 QVPRTFREICELTRVPKKIIGQCYKTLEQAFNLAPGANGSTNDRGIVAGTGPEDLLVRYC 248
Query: 114 DRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS--DIV 171
+ L G + A DI+ + I GR P + GAA++ + H L +KS DI
Sbjct: 249 NHL--GLPPNIQSYASDIIVEARNQGIAAGRSPVSIAGAAIFFTC--HLLDQTKSVKDIT 304
Query: 172 KIVHICEATL----------MKRLIEFENTDSGSLTIE 199
+ + E TL ++L++ E D+G +++
Sbjct: 305 GVAGVSEGTLKLVYKLLYADREKLVKQEWIDAGKASLD 342
>gi|14548146|gb|AAK66803.1|U40238_26 transcription factor TFIIB [uncultured crenarchaeote 4B7]
Length = 211
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +M ++K+ L++ + ++ A Y A+ + KGR + + A+C+Y ACR
Sbjct: 25 LRQALSEMDKLKDKLSL--TGAVIEKAAYIYRKAIEKKLVKGRSIQGLVAACVYAACRDT 82
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRL 116
P L D +N +NI ++ Y + + L +AD N + ++ SI L + T R
Sbjct: 83 ETPRTLGDVANGINIRRKDVARCYRLIFRELDLKVPVADPINGIPRIASSIGLGEKTKR- 141
Query: 117 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 176
A +IL K+ + G+ P+GL AALY++ +T G ++ +I + +
Sbjct: 142 ----------KAVEILRKAKKIGVVAGKDPTGLAAAALYLACITEGGNKTQKEISEASGV 191
Query: 177 CEATLMKR 184
E T+ R
Sbjct: 192 TEVTIRNR 199
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 152 ALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 209
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 210 RTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG-- 261
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 262 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 321
Query: 183 KRLIEF 188
R E
Sbjct: 322 NRYKEL 327
>gi|76803041|ref|YP_331136.1| transcription initiation factor TFB 6 [Natronomonas pharaonis DSM
2160]
gi|76558906|emb|CAI50502.2| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 329
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E + LY ACRQ+S P
Sbjct: 147 ALSEIDRMASALGVPRS--VREVASVTYRRALDEDLIRGRSIEGAATATLYAACRQESIP 204
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y L Q L + +K DP ++ +F L ++
Sbjct: 205 RSLDEVAEVARVEQKEIGRTYRYLSQELGLE-----IKPADPKEYVPRFCSEL--ALSEA 257
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V R+I+ + + +G+ P+G AA+Y ++L K ++ ++ ++ + E T+
Sbjct: 258 VEQKTREIIDVTAEEGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRN 317
Query: 184 RLIE 187
R E
Sbjct: 318 RYQE 321
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 9/195 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A RQ
Sbjct: 138 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 196 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 248
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K ++S++ + +I E T
Sbjct: 249 SDEAERRARSLLNTAKEQGLHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVT 308
Query: 181 LMKRLIEFENTDSGS 195
+ R E + G+
Sbjct: 309 IRNRYHELLEAEDGA 323
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ +M + N+G ++ A Y AV N +GR E V A+ +Y ACR
Sbjct: 124 LSQALQELERMSS--NLGLPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRML 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S I E+G VY + + L + + P ++ +F +L G
Sbjct: 182 GIPRTLEEISTVTRIKKREIGRVYRIMSRTLKLN-----IYPTKPEDYIDRFCSKLKLSG 236
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+V A +I+ + I +GR P+G+ AA+Y++A+ G + ++ ++ ++ + E T
Sbjct: 237 --EVKKKAYEIIKMARERDIISGRGPTGVAAAAIYIAAILMGERRTQREVAEVAGVTEVT 294
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 295 IRNRYKEL 302
>gi|45357604|ref|NP_987161.1| transcription initiation factor IIB [Methanococcus maripaludis S2]
gi|74556259|sp|Q6M176.1|TF2B_METMP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|45047164|emb|CAF29597.1| transcription initiation factor B [Methanococcus maripaludis S2]
Length = 339
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|42557795|emb|CAF28768.1| putative transcription initiation factor TFIIB [uncultured
crenarchaeote]
Length = 304
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 9/182 (4%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L +G D ++ A Y A+ + +GR + A+ LY ACR
Sbjct: 122 QAFSELDRLKDKLAVG--DAVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTET 179
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK 122
P L D ++ NI ++ Y L + L + + VDP + + + G ++
Sbjct: 180 PRTLKDIAHASNIKKKDVARCYRLLIRELDLK-----MPVVDPVKCVARIASK--SGLSE 232
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
K A +IL ++ I+ G+ P GL AALYV+ + +G ++ D+ + + E T+
Sbjct: 233 KTKRKALEILKKAEQGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIR 292
Query: 183 KR 184
R
Sbjct: 293 NR 294
>gi|349805805|gb|AEQ18375.1| putative brf1 subunit of rna polymerase iii transcription
initiation factor iiib [Hymenochirus curtipes]
Length = 101
Score = 59.7 bits (143), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 9 RQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
RQ+ N + + + + A F+ +AV+++ T+GR+ V A+CLYL CR + P +L+
Sbjct: 29 RQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRGRKMTHVIAACLYLVCRTEGTPHMLL 88
Query: 68 DFSNYLNINVYEL 80
D S+ L +NVY L
Sbjct: 89 DLSDLLQVNVYVL 101
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 88/185 (47%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M + L++ +S I A Y AV +GR E V A+ LY ACRQ S P
Sbjct: 123 ALAELDRMASRLDLPKS--IREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNP 180
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + E+G Y + + L + + P ++ +F L + +
Sbjct: 181 RTLDEIGEASRTGRKEIGRTYRFMVRELKMK-----IPPTKPEDYIPRFCSGL--DLDAE 233
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +++A+ + +T+GR P+G+ + +Y++++ G + ++ ++ ++ + E T+
Sbjct: 234 VQAKAYELIAAAQERELTSGRGPTGIAASIIYIASVLCGKRRTQREVAEVAGVTEVTIRN 293
Query: 184 RLIEF 188
R E
Sbjct: 294 RYKEL 298
>gi|340623224|ref|YP_004741677.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
gi|339903492|gb|AEK18934.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
Length = 339
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|150399786|ref|YP_001323553.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399791|ref|YP_001323558.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399796|ref|YP_001323563.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399801|ref|YP_001323568.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150012489|gb|ABR54941.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012494|gb|ABR54946.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012499|gb|ABR54951.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012504|gb|ABR54956.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
Length = 339
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPIDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ES + A Y A+ + GR E V S LY A RQ
Sbjct: 136 LKQALGEIDRMASALGLPES--VRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQA 193
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + + + E+ Y + + L + ++ DP ++ +F L LP
Sbjct: 194 GTPRSLDEIAAVSRVGKDEIARTYRYVVRELSLE-----IQPADPESYVPRFVSDLDLP- 247
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V AR +L + K + +G+ P GL AA+Y ++L K ++S++ ++ +I E
Sbjct: 248 --DEVERRARQLLGTAKEQGVHSGKSPVGLAAAAVYAASLLANEKVTQSEVSEVANISEV 305
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 306 TIRNRYHEL 314
>gi|308162410|gb|EFO64809.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia P15]
Length = 476
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 27/221 (12%)
Query: 22 EIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 81
E+V A +Y + T+GRR + A+ LY+ RQ + LLID+++ LN++V+ L
Sbjct: 88 ELVRKASDYYANCLRDKVTRGRRNNLLAAALLYIVGRQHNLSHLLIDYADALNVSVFTLN 147
Query: 82 AVYLQ--LCQV---LYIADESNVLKQVDPSIFLHKFTD--------RLLPGGNKKVCDTA 128
Y+Q L Q L D ++L + SI +FT L + D
Sbjct: 148 K-YIQPFLRQYNIKLPYQDLESLLPRFVDSILKEEFTATFQDNRDCMLFANIHITSVDQL 206
Query: 129 RD--------ILASMKRDWITTGRKPSGLCGAALYVS--ALTHGLKFSKSDIVKIVHICE 178
R+ IL + I TGR PSGL GA+++V+ L +G+ + + + V
Sbjct: 207 REHTLVVSKYILKASTAINIHTGRLPSGLLGASIFVALKLLNYGIPIHR--VSRCVFCSP 264
Query: 179 ATLMKRLIEFENTDS-GSLTIEDFMARKKELHEGVAANLPN 218
T+ +RL E ++++ LTI D + + E + P+
Sbjct: 265 DTVARRLQEMQSSELFAKLTIGDVLRNVDLVLENIDVRPPS 305
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 97/197 (49%), Gaps = 12/197 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S ++ EL Y + + L + +K DP ++ +F L L
Sbjct: 195 GTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 249
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S + + + +G+ P GL AA+Y +AL K +++D+ ++ I E
Sbjct: 250 ETERM---ARELLDSAREEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEV 306
Query: 180 TLMKRLIE-FENTDSGS 195
T+ R E E +DS +
Sbjct: 307 TIRNRYKELLEASDSAA 323
>gi|327311923|ref|YP_004338820.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
gi|326948402|gb|AEA13508.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
Length = 317
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++K+A+ G V A Y A+ + +GR E + A+ LY+ACR
Sbjct: 130 QAAQELERLKSAM--GVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMLKT 187
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + + + E+ Y L + E NV + DP +++ + ++L G+
Sbjct: 188 PRPLDELIRFTKASRREVARCYRLLLR------ELNVRVPISDPVLYISRVAEQLKLTGD 241
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
V TA DI+ K+ +T G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 242 --VVKTAIDIINKAKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQKDFAIAAGVTEVTV 299
Query: 182 MKRLIEF 188
R E
Sbjct: 300 RNRYKEL 306
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L
Sbjct: 195 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASDL--DL 247
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S + ++ +I E T
Sbjct: 248 SEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVANISEVT 307
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 308 IRNRYHEL 315
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G + I A Y V N +GR E V + +Y ACR+ P L + + +
Sbjct: 206 LGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTLDEIATISGLP 265
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
E+G Y + L + + DP ++ ++ + L G + + A ++L
Sbjct: 266 KKEIGRAYRAISHELGLK-----IPLTDPIAYVPRYVNALKLSGEAQ--EKAVELLNDAM 318
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189
+ +GR P+G+ AA+Y++ G + ++ ++ + + E T+ R E +
Sbjct: 319 AKGLVSGRSPTGVSAAAVYIAGALAGERRTQKEVADVAGVTEVTIRNRYRELK 371
>gi|448423775|ref|ZP_21582108.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
gi|445683032|gb|ELZ35437.1| transcription factor TFIIB cyclin-related protein [Halorubrum
terrestre JCM 10247]
Length = 396
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ
Sbjct: 208 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 265
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 266 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 318
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 319 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 378
Query: 181 LMKR---LIEFENT 191
+ R L+E E++
Sbjct: 379 IRNRYHELLEAEDS 392
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A R
Sbjct: 130 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 GTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASEL--GL 240
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|297527296|ref|YP_003669320.1| Transcription factor TFIIB cyclin-like protein [Staphylothermus
hellenicus DSM 12710]
gi|297256212|gb|ADI32421.1| Transcription factor TFIIB cyclin-related protein [Staphylothermus
hellenicus DSM 12710]
Length = 313
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ + LN+ + + A R Y AV + +GR E V A+ +Y ACR+
Sbjct: 124 LAQAMNELDRLSDQLNLPRN--VKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACREL 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S + + ++ Y L + L I +++ DP F+ + L GG
Sbjct: 182 KVPRTLDEISKHTKSSRKDIARCYRLLLKELDIKVQTS-----DPIDFIPRIAHALNLGG 236
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
V A +IL + +T G+ P+GL AA+Y++A G + ++ +I + + E T
Sbjct: 237 G--VMKKAAEILHKARSIGVTAGKDPAGLAAAAVYIAAQLSGERRTQKEIAHVAGVTEVT 294
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 295 VRNRYKEL 302
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L
Sbjct: 195 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELSLE-----IQPADPESYVPRFASDL--DL 247
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++V AR +L + K++ + +G+ P GL AA+Y ++L K ++S + ++ +I E T
Sbjct: 248 SEEVERRARQLLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVANISEVT 307
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 308 IRNRYHEL 315
>gi|435849538|ref|YP_007311726.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433675746|gb|AGB39936.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 318
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 14/189 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + V Y A+ + +GR E V + LY CRQ+
Sbjct: 134 LQFALSEIDRMASALGVPRA--VREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQE 191
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 118
P L + + I E+ Y YI++E + L+ +DP ++ +FT +L LP
Sbjct: 192 GIPRSLEEITEVSRIERIEISRTYR------YISNELGLELRPIDPKQYVPRFTSKLELP 245
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
++V A +I+ D + +GR PSG AA+Y +AL K ++ ++ + + E
Sbjct: 246 ---QEVETKANEIIDETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQREVADVAQVTE 301
Query: 179 ATLMKRLIE 187
T+ R E
Sbjct: 302 VTIRNRYQE 310
>gi|448431679|ref|ZP_21585190.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445687455|gb|ELZ39738.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 238
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A RQ
Sbjct: 50 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQA 107
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 108 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 160
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 161 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 220
Query: 181 LMKR---LIEFENT 191
+ R L+E E++
Sbjct: 221 IRNRYHELLEAEDS 234
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +M ++K+ L + +D ++ A Y A+ R KGR + A+C+Y +CR
Sbjct: 125 LRQALSEMDKLKDKLTL--TDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMT 182
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D + +NI ++ Y + + L + + DP + + L G
Sbjct: 183 ETPRTLDDIAEGINIKRKDVARSYRIIFRELDLK-----IPVADPVKGVSRIAS--LAGL 235
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ A +L K+ + G+ P G+ AALY++ ++ G ++ +I + E T
Sbjct: 236 GEATKRKALILLNKAKKIGMVAGKDPMGIAAAALYLACISTGGSKTQKEISIASGVTEVT 295
Query: 181 LMKRLIEFE 189
+ R + +
Sbjct: 296 IRNRCVGLK 304
>gi|435846604|ref|YP_007308854.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672872|gb|AGB37064.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 321
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L + + ++ E+G Y + Q L + ++ VDP ++ +F L LP +
Sbjct: 196 RSLDEVAAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELDLP---E 247
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+
Sbjct: 248 EVQLKANEIITTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIR 307
Query: 183 KRLIE 187
R E
Sbjct: 308 NRYQE 312
>gi|345007304|ref|YP_004810156.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322930|gb|AEN07783.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 308
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ ++R++ +AL + E+ + A R + A +F +GR E + A+ +Y ACR
Sbjct: 125 LAHGLGEVRRISSALELSET--LRDQACRLFRSAQNEDFLRGRSIEAMAAASIYGACRCN 182
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+P L + ++ + + Y L L + + V PS F+ + L
Sbjct: 183 GRPRTLNEVTDSARVEDSRITNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DV 235
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ ++ AR + + + TTG +PSG A LY + G + ++SD+ ++ ++ T
Sbjct: 236 SDQLRQRARRLAEASEATGATTGVRPSGFAAACLYKAGREQGRRLTQSDVAEVANVSPVT 295
Query: 181 L 181
+
Sbjct: 296 V 296
>gi|448316805|ref|ZP_21506385.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445606975|gb|ELY60873.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 321
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L + + ++ E+G Y + Q L + ++ VDP ++ +F L LP +
Sbjct: 196 RSLDEVAAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELDLP---E 247
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+
Sbjct: 248 EVQLKANEIITTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIR 307
Query: 183 KRLIE 187
R E
Sbjct: 308 NRYQE 312
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 150 ALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 207
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 208 RTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG-- 259
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 260 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 319
Query: 183 KRLIEF 188
R E
Sbjct: 320 NRYKEL 325
>gi|448567682|ref|ZP_21637607.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445711680|gb|ELZ63470.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 342
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 11/200 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + +Y A RQ
Sbjct: 148 LKQALGEVERMGSAL--GLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQA 205
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + +K DP+ +L +F L
Sbjct: 206 GVPRSLDEVRRVSRVDKMELTRTYRYVSRELGLD-----MKPADPAQYLPRFVSEL--DV 258
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
V AR +L + KR I +G+ P GL AA+Y L + ++S++ ++ I E T
Sbjct: 259 TDDVERRARSLLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEVSEVTDISEVT 318
Query: 181 LMKRLIE-FENTD-SGSLTI 198
+ R E E T SG +T+
Sbjct: 319 IRNRYRELLEATQKSGEMTV 338
>gi|359417944|ref|ZP_09209980.1| transcription initiation factor IIB, partial [Candidatus
Haloredivivus sp. G17]
gi|358031705|gb|EHK00573.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 201
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 13/187 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A ++ M + LN+ ES VH R Y AV + +GR E + ++ +Y+ R++
Sbjct: 11 ALSELNSMISNLNLPES---VHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGT 67
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGN 121
P L + S+ I E+G Y Y+A E + + P ++ +F +L G
Sbjct: 68 PRTLDEISDASGIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFAGKLQLSG- 120
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V AR+IL + + +G+ P+GL AALY++A+ G K ++ ++ +V + E T+
Sbjct: 121 -EVQARARNILKEARERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTI 179
Query: 182 MKRLIEF 188
R E
Sbjct: 180 RNRYKEL 186
>gi|448411918|ref|ZP_21576274.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669852|gb|ELZ22460.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 326
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ++ + A Y A+ N GR E V + LY A RQ
Sbjct: 140 LKQALGEIDRMASALGLPKT--VRETASVIYRRALEENLLPGRSIEGVATASLYAAARQA 197
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
+ P L + + + EL Y Y+ E N+ +K DP +L +F L
Sbjct: 198 NTPRSLDEMTAVSRVEKMELTRTYR------YVVRELNLEIKPADPESYLPRFVSDLELS 251
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ + AR+++ S + I +G+ P GL AA+Y +AL K ++S++ + +I E
Sbjct: 252 DDTE--RRARELIVSARDQGILSGKSPVGLAAAAVYAAALLTNEKVTQSEVSDVANISEV 309
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 310 TIRNRYKEL 318
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 4 AFDDMRQMKNALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A ++ M + LN+ ES VH R Y +V + +GR E + ++ +Y+ R++
Sbjct: 170 ALSELNSMISNLNLPES---VHEETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGT 226
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGN 121
P L + S+ I E+G Y Y+A E + + P ++ +F +L G
Sbjct: 227 PRTLDEISDASGIEKREIGRAYR------YVARELGLRILPAKPQDYVPRFAGKLQLSG- 279
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V AR IL + + +G+ P+GL AALY++A+ G K ++ ++ +V + E T+
Sbjct: 280 -EVQARARQILKEARERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTI 338
Query: 182 MKRLIEFENTDSGSLTIEDFMARK 205
R E + L +ED + K
Sbjct: 339 RNRYKEL----AEKLGLEDELEEK 358
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ
Sbjct: 165 LKQALGEVDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 222
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 223 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 275
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 276 SDEAERRARSLLDTAKAQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 335
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 336 IRNRYHEL 343
>gi|448343629|ref|ZP_21532552.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|445622685|gb|ELY76131.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 329
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D++ A Y A+ + GR E V + LY A RQ
Sbjct: 142 LKQALGEIDRMASAL--GLPDDVRETASVIYRRALEDDLLPGRSIEGVATASLYAAARQA 199
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S ++ E+ Y + + L + ++ DP ++ +F L
Sbjct: 200 GTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ ++ I E T
Sbjct: 255 ETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVT 312
Query: 181 LMKRLIEFENTDSGS 195
+ R E + G+
Sbjct: 313 IRNRYHELLEAEDGA 327
>gi|448491685|ref|ZP_21608525.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445692685|gb|ELZ44856.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 209
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 10/197 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ
Sbjct: 21 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 78
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 79 GTPRSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 131
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T
Sbjct: 132 SDEAERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVT 191
Query: 181 LMKRLIE-FENTDSGSL 196
+ R E E DS +L
Sbjct: 192 IRNRYHELLEAEDSVAL 208
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 153 ALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 210
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + ++ E+G Y + + L + L P ++ +F L G +
Sbjct: 211 RTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLNLKG--E 263
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 264 VQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRN 323
Query: 184 RLIEF 188
R E
Sbjct: 324 RYKEL 328
>gi|433591402|ref|YP_007280898.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448332920|ref|ZP_21522140.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433306182|gb|AGB31994.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445624764|gb|ELY78139.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 324
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E A Y AV GR E + +CLY A RQ+
Sbjct: 136 LKQALGEIERMASALGLPEP--CRETAGVIYRRAVEEELLPGRSIEAMATACLYAAARQQ 193
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L+ F++ + + Y L L + ++ DP +L ++ L G
Sbjct: 194 GTPRTLVAFASVSRVEKLPIQRAYRYLSSELGLK-----IEPADPIHYLPQYASEL--GV 246
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ AR IL + K + +GR P+GL AA+Y + ++ I + + T
Sbjct: 247 GDETERLARKILEAAKDRDLHSGRSPAGLAAAAIYGAGRLTDEGLTQERIGEETGVSGVT 306
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 307 VRNRYREL 314
>gi|448370421|ref|ZP_21556593.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445649168|gb|ELZ02110.1| Transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 323
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 140 ALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 197
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L + + +N E+G Y + Q L + ++ V+P ++ +F L LP +
Sbjct: 198 RSLDEVAAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELDLP---E 249
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+
Sbjct: 250 EVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQVTEVTIR 309
Query: 183 KRLIE 187
R E
Sbjct: 310 NRYQE 314
>gi|397774847|ref|YP_006542393.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|397683940|gb|AFO58317.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
Length = 329
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D++ A Y A+ + GR E V + LY A RQ
Sbjct: 142 LKQALGEIDRMASAL--GLPDDVRETASVIYRRALEADLLPGRSIEGVATASLYAAARQA 199
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S ++ E+ Y + + L + ++ DP ++ +F L
Sbjct: 200 GTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ ++ I E T
Sbjct: 255 ETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVT 312
Query: 181 LMKRLIEFENTDSGS 195
+ R E + G+
Sbjct: 313 IRNRYHELLEAEDGA 327
>gi|150401578|ref|YP_001325344.1| transcription initiation factor IIB [Methanococcus aeolicus
Nankai-3]
gi|189029853|sp|A6UW60.1|TF2B_META3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150014281|gb|ABR56732.1| Transcription factor TFIIB cyclin-related [Methanococcus aeolicus
Nankai-3]
Length = 334
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 173 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIGRTYRFISR 232
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 148
L I L P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 233 ELKIR-----LAPTSPIDYVPRFASELKLPG---EVESKAISILQKAGDKGLTSGRGPTG 284
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 285 VAAAAIYIASVLHGTRKTQREVADVAGVTEVTIRNRYKEL 324
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A R
Sbjct: 130 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 DTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GL 240
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A R
Sbjct: 130 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 DTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GL 240
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+ A+ +G + A Y AV + +GR E + ++ LY ACR + P L + +
Sbjct: 124 RMAVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAR 183
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
+ + E+G Y + + L + N+L P ++ +F D L G + + AR+I
Sbjct: 184 FSKVTKKEIGRSYRFMARGLGL----NLLP-TSPIDYVDRFGDAL--GVSARTKKRAREI 236
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
L R IT+G+ P+GL AALY+++L G K ++ ++ ++ ++ E T+ R E
Sbjct: 237 LQEAIRVGITSGKGPTGLAAAALYLASLLEGEKKTQREVAEVANVTEVTVRNRYKEL 293
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y L +
Sbjct: 182 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLAR 241
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 148
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 242 ELGIK-----LAPTNPIDYVPRFASELGLPG---EVESKAIAILQKAAEKGLTSGRGPTG 293
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ AA+Y++++ G + ++ D+ ++ + E T+ R E
Sbjct: 294 VAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIRNRYKEL 333
>gi|435846578|ref|YP_007308828.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672846|gb|AGB37038.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 328
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + ++ + V Y A+ + +GR E V + LY CRQ+
Sbjct: 144 LQFALSEIERMASALGVPKA--VREVTSVIYRRALQEDLIRGRSIEGVATAALYAGCRQE 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + I E+ Y YI++E + L +DP ++ +FT +L
Sbjct: 202 GIPRSLEEVTEVSRIERIEISRTYR------YISNELGLELLPIDPKQYVPRFTSKL--D 253
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++V A++I+ D + +GR PSG AA+Y + L K ++ D+ + + E
Sbjct: 254 LSQEVETKAKEIIDETA-DPLLSGRGPSGFAAAAIYAATLLCNEKRTQKDVADVAQVTEV 312
Query: 180 TLMKRLIE 187
T+ R E
Sbjct: 313 TIRNRYQE 320
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A R
Sbjct: 130 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 GTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASDL--GL 240
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|169863349|ref|XP_001838296.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
gi|116500589|gb|EAU83484.1| transcription initiation factor IIB [Coprinopsis cinerea
okayama7#130]
Length = 340
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 11/189 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF D+ + ++ ++ I +AK+ Y +G+ E V A+C+++ACRQ P
Sbjct: 135 AFRDISNWCDQFSLPKT--ISDIAKQLYKRTDEEKLLRGKPLEAVIAACIFIACRQAHVP 192
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
D + +++ LG Y L + + P FL ++ + L LP +
Sbjct: 193 RSFKDICSLTHVSKKMLGQCYKVLERAF---TQVGAAPSSGPEGFLVRYCNYLDLPPNVQ 249
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL- 181
+C RD++ + + I R P + G A+Y + G + +I ++ + E T+
Sbjct: 250 GIC---RDVIVAAREHGIADSRSPLSIAGGAIYFCCMLLGHTRTLREISQVAGVTETTIQ 306
Query: 182 -MKRLIEFE 189
+ RL FE
Sbjct: 307 SVYRLYYFE 315
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 11/195 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A++ N GR E V + LY A RQ
Sbjct: 146 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQD 203
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L +F+ ++ EL Y + + L + ++ DP ++ +F RL L
Sbjct: 204 GNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPESYVPRFVSRLDLSE 258
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L KR IT+G+ P GL +A+Y +AL K ++S + + I E
Sbjct: 259 ETQRL---ARELLDGAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVADISEV 315
Query: 180 TLMKRLIEFENTDSG 194
T+ R E + G
Sbjct: 316 TIRNRYKELLDASEG 330
>gi|448386369|ref|ZP_21564495.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445655320|gb|ELZ08166.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 324
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E A Y AV GR E + +CLY A RQ+
Sbjct: 136 LKQALGEIERMASALGLPEP--CRETAGVIYRRAVEEELLPGRSIEAMATACLYAAARQQ 193
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L+ F++ + + Y L L + ++ DP +L ++ L G
Sbjct: 194 GTPRTLVAFASVSRVEKLPVQRAYRYLSSELGLK-----IEPADPIHYLPQYASEL--GV 246
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ AR IL + K + +GR P+GL AA+Y + ++ I + + T
Sbjct: 247 GDETERLARKILEAAKDRDLHSGRSPAGLAAAAIYGAGRLTDEGLTQERIGEETGVSGVT 306
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 307 VRNRYREL 314
>gi|429217323|ref|YP_007175313.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
gi|429133852|gb|AFZ70864.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
Length = 317
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%)
Query: 20 SDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYE 79
S+++ A + Y A + T+GR E V A+ LY ACR+ P + + + +L+I +
Sbjct: 143 SNKVREEASKMYRDATQKGLTRGRSIESVVAATLYAACRKLRIPCTIDEIAKHLSIKDND 202
Query: 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDW 139
+ + C L + D + ++P +F+++ L G V A IL +
Sbjct: 203 VKR-EIARCYRLLVRDLEVDIPVIEPELFVNRIVSAL--GLPDYVAVEAIKILREARGKG 259
Query: 140 ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLT 197
T G+ PSGL AA+Y++AL HGL+ ++ ++ + + E T+ R E + L+
Sbjct: 260 TTAGKDPSGLAAAAVYLAALKHGLRRTQKEVAHVAGVTEVTVRNRYKEIAGEAASKLS 317
>gi|407462994|ref|YP_006774311.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046616|gb|AFS81369.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 309
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G SD I+ A FY A+ RN +GR + V A+CLY AC+ L + + I
Sbjct: 134 LGLSDTIIERASLFYRKAIKRNLIRGRTVKSVAAACLYAACKDLEHDRSLTEIAIQFVIK 193
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
E+ Y L + L + V+P + K T +L ++K A IL +
Sbjct: 194 RKEISRAYRILFKELGFT-----VNVVNPIKLISKITSKLEL--SEKTIRKATQILTVAQ 246
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189
IT G+ P L + +Y + + G S++ + + + ++ R+ EF+
Sbjct: 247 DAGITVGKNPEILAASVIYAACVITGELKSQTQVAEAANTSTVSIRNRIREFK 299
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A R
Sbjct: 144 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 202 GTPRSLDEITSVSRVEKDEIARTYRYVVRELSLE-----IKPADPEQYVPRFASDL--GL 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 255 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 314
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 315 IRNRYHEL 322
>gi|448581117|ref|ZP_21645107.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445733879|gb|ELZ85439.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 342
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 11/200 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + +Y A RQ
Sbjct: 148 LKQALGEVERMGSAL--GLPDTVRETASVIYRRALDDDLLPGRSIEGVATAAIYAAARQA 205
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + +K DP+ +L +F L
Sbjct: 206 GVPRSLDEVRRVSRVDKMELTRTYRYVSRELGLD-----MKPADPAQYLPRFVSEL--DV 258
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
V AR +L + KR I +G+ P GL AA+Y L + ++S++ + I E T
Sbjct: 259 TDDVERRARSLLDNAKRQGIHSGKSPVGLAAAAIYAGGLLADEELTQSEVSDVTDISEVT 318
Query: 181 LMKRLIE-FENTD-SGSLTI 198
+ R E E T SG +T+
Sbjct: 319 IRNRYRELLEATQKSGEMTV 338
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
VA Y AV + +GR E + ++ LY ACR + P L + ++ ++ E+G Y
Sbjct: 141 VAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASVSKVSKKEIGRSYR 200
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRK 145
+ + L + L+ P ++ +F D L G + + A++IL + IT+G+
Sbjct: 201 FMARGLGLN-----LRPTSPIEYVDRFGDAL--GVSARTKKRAKEILNEAIKRGITSGKG 253
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
P+GL AALY++AL G K ++ ++ ++ H+ E T+ R E
Sbjct: 254 PTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKEL 296
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A R
Sbjct: 130 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 187
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 188 DTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASDL--GL 240
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 241 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 300
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 301 IRNRYHEL 308
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ++ + A Y A+ + GR E V S LY A R
Sbjct: 136 LKQALGEIDRMASALGLPQN--VRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMA 193
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + EL Y + + L + ++ DP +L +F L G
Sbjct: 194 GNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISDL--GL 246
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S + + I E T
Sbjct: 247 SEETQRQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVT 306
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 307 IRNRYKEL 314
>gi|383625175|ref|ZP_09949581.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 329
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 11/196 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 142 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 199
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPG 119
P L + S + E+ Y + + L + ++ DP ++ +F +D LP
Sbjct: 200 GTPRSLDEISAVSRVEKDEIARTYRYVVRELGLE-----VQPADPESYVPRFASDLELPD 254
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ AR +L + K + I +G+ P GL AA+Y +AL K +++D+ ++ I E
Sbjct: 255 ETER---RARRLLKTAKDEGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEV 311
Query: 180 TLMKRLIEFENTDSGS 195
T+ R E + G+
Sbjct: 312 TIRNRYHELLEAEEGA 327
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 93/189 (49%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY + RQ
Sbjct: 135 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYASARQA 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
S P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 193 STPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEQYVPRFVSDLDLSD 247
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++ I E
Sbjct: 248 ETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEV 304
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 305 TIRNRYKEL 313
>gi|386875848|ref|ZP_10118004.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386806350|gb|EIJ65813.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 307
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 11/187 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AFD + ++++ L++ SD + A Y A+ R T GR V A+ +Y+ACR
Sbjct: 124 AFDFLERLQDKLSV--SDSVKETAAHIYRKALERKITSGRSIYSVVAASMYIACRNTHTL 181
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L D + NI + Y + + L + + V+ S F+ K ++ L + G K
Sbjct: 182 RNLSDIATATNIKRTNIAQSYRAIVKQLDLK-----IPLVNQSDFILKISNNLKISAGTK 236
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+ A +IL + GR P+G+ A++Y S + FS+ I I T+
Sbjct: 237 NL---AIEILKKATELDMIAGRDPAGMASASIYFSNVVRHDGFSQIQIANASGITAVTVR 293
Query: 183 KRLIEFE 189
R E
Sbjct: 294 NRFHELR 300
>gi|374723591|gb|EHR75671.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 308
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M + L + +S + A Y AV + +GR E V A+ LY ACRQ P
Sbjct: 123 ALAELDRMASRLELPKS--VREAAAVNYKKAVDKRLIRGRSIEGVAAASLYAACRQCGVP 180
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + E+G Y + + L + + P ++ +F L G + +
Sbjct: 181 RTLDEIGQASRTGRKEIGRTYRFMVRELKMK-----IMPTGPEDYISRFCSGL--GLDAE 233
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +++ + + +T+GR P+G+ + +Y++++ G + ++ ++ ++ + E T+
Sbjct: 234 VEAKAYELIKAAQEKELTSGRGPTGIAASIIYIASVLCGKRRTQREVAEVAGVTEVTIRN 293
Query: 184 RLIEF 188
R E
Sbjct: 294 RYKEL 298
>gi|448322082|ref|ZP_21511555.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602070|gb|ELY56050.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L + + ++ E+G Y + Q L + ++ VDP ++ +F L LP +
Sbjct: 196 RSLDEVAAVSRVDRMEIGRTYRYISQELGLE-----MEPVDPKKYVPRFCSELDLP---E 247
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+
Sbjct: 248 EVQLKANEIINTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIR 307
Query: 183 KRLIE 187
R E
Sbjct: 308 NRYQE 312
>gi|448308419|ref|ZP_21498296.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445593707|gb|ELY47876.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 321
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A++ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASALGVPRS--VREVASVLYRRALSEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 196 RSLDEVAAVSRVERMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL--DLSEE 248
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+
Sbjct: 249 VQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRN 308
Query: 184 RLIE 187
R E
Sbjct: 309 RYQE 312
>gi|448476740|ref|ZP_21603675.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445815191|gb|EMA65123.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 307
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y A+ + +GR E V + LY ACR++ P L + S+ + E+G Y + Q
Sbjct: 148 IYRRALNEDLIRGRSIEGVSTAALYAACRKEGIPRSLEEISDVSRVERKEIGRTYRYISQ 207
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 149
L + ++ VDP ++ +F+ L +++V A +I+ + + +G+ P+G
Sbjct: 208 ELGLE-----MRPVDPKKYVPRFSSEL--DLSEEVQSKANEIIETTAEQGLLSGKSPTGF 260
Query: 150 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 261 AAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 298
>gi|448479384|ref|ZP_21604236.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
gi|445822662|gb|EMA72426.1| transcription factor TFIIB cyclin-related protein [Halorubrum arcis
JCM 13916]
Length = 385
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ P
Sbjct: 200 ALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTP 257
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+ Y + + L + ++ DP ++ +F L G + +
Sbjct: 258 RSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GLSDE 310
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+
Sbjct: 311 AERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRN 370
Query: 184 R---LIEFENT 191
R L+E E++
Sbjct: 371 RYHELLEAEDS 381
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 142 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQA 199
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + ++ DP ++ +F L
Sbjct: 200 GTPRSLDELETVSRVDKMELTRTYRYVVRELKLE-----IEPADPEQYVPRFASEL--DL 252
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + ARD+L + K+ I +G+ P GL AA+Y +AL K ++S++ ++ I E T
Sbjct: 253 SDEAERQARDLLRNAKKAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVASISEVT 312
Query: 181 LMKRLIEFENTDSGSL 196
+ R E D L
Sbjct: 313 IRNRYKELLEVDDAGL 328
>gi|257052263|ref|YP_003130096.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256691026|gb|ACV11363.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 323
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + +Y A RQ
Sbjct: 135 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQA 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + ++ DP ++ +FT L
Sbjct: 193 GVPRSLDELTDVSRVEKDEIARTYRYVVRELGLE-----VRPADPESYVPRFTSDL--EL 245
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ AR++LA+ K + + +G+ P GL AA+Y ++L K +++ + ++ I E T
Sbjct: 246 SEEAERRARELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVADISEVT 305
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 306 IRNRYHEL 313
>gi|18977059|ref|NP_578416.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|18892698|gb|AAL80811.1| transcription initiation factor IIB chain b homolog [Pyrococcus
furiosus DSM 3638]
Length = 283
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 7/185 (3%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++R++ L + + E A Y A R T+ E A+C+Y CR P
Sbjct: 95 AMSELRRLSGMLKLPKYVE--EEAAYLYREAAKRGLTRRIPIETTVAACIYATCRLFKVP 152
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++Y E+ + + + L + + + + P+ ++ KF D L +++
Sbjct: 153 RTLNEIASYSKTEKKEIMKAFRVIVRNLNLTPKMLLAR---PTDYVDKFADEL--ELSER 207
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V DIL + IT+G+ P L AALY+++L G + S+ +I ++ + E T+
Sbjct: 208 VRRRTVDILRRANEEGITSGKNPLSLVAAALYIASLLEGERRSQKEIARVTGVSEMTVRN 267
Query: 184 RLIEF 188
R E
Sbjct: 268 RYKEL 272
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A R
Sbjct: 127 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMA 184
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 185 DTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GL 237
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 238 SDEPERRARQLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 297
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 298 IRNRYHEL 305
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ES + A Y A+ + GR E V + LY + R
Sbjct: 157 LKQALGEIDRMASALGLPES--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMA 214
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
S P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 215 STPRSLDEITSVSRVEKEEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GL 267
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ + +I E T
Sbjct: 268 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSGVANISEVT 327
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 328 IRNRYHEL 335
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ GR E V + LY A RQ
Sbjct: 158 LKQALGEVDRMASALGLPEN--VRETASVIYRRALDEELLPGRSIEGVATASLYAAARQA 215
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + +N + E+ Y + + L + +K DP ++ +F L
Sbjct: 216 GTPRSLDEITNVSRVGRDEIARTYRYVVRELKLQ-----IKPADPEQYVPRFASDL--DL 268
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L S K + +G+ P GL AA+Y ++L K ++ ++ + +I E T
Sbjct: 269 SDEAERRARQLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVT 328
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 329 IRNRYHEL 336
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ GR E V + LY A RQ
Sbjct: 158 LKQALGEVDRMASALGLPEN--VRETASVIYRRALDEELLPGRSIEGVATASLYAAARQA 215
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + +N + E+ Y + + L + +K DP ++ +F L
Sbjct: 216 GTPRSLDEITNVSRVGRDEIARTYRYVVRELKLQ-----IKPADPEQYVPRFASDL--DL 268
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L S K + +G+ P GL AA+Y ++L K ++ ++ + +I E T
Sbjct: 269 SDEAERRARQLLRSAKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVT 328
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 329 IRNRYHEL 336
>gi|289937651|ref|YP_003482253.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|448283863|ref|ZP_21475128.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|289533342|gb|ADD07691.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445571958|gb|ELY26500.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
Length = 321
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 13/186 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +A+ + S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASAMGVPRS--VREVASVLYRRALEEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGN 121
L + + + E+G Y YI+ E + ++ VDP ++ +F L LP
Sbjct: 196 RSLDEIAAVSRVERMEIGRTY------RYISKELGLEMQPVDPKKYVPRFCSELELP--- 246
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V A +I+ + + +G+ P+G AA+Y +AL K ++ ++ + + E T+
Sbjct: 247 DEVQSKANEIIDTTAEKGMLSGKSPTGYAAAAIYAAALLCNKKKTQREVADVAQVTEVTI 306
Query: 182 MKRLIE 187
R E
Sbjct: 307 RNRYQE 312
>gi|448391802|ref|ZP_21566897.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445665214|gb|ELZ17892.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 323
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 135 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 193 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 247
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++ I E
Sbjct: 248 ETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEV 304
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 305 TIRNRYKEL 313
>gi|161527525|ref|YP_001581351.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338826|gb|ABX11913.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF + MK L++ D +V A Y V+ T+GR + ++ LY ACR+
Sbjct: 120 LSKAFTLLHSMKTKLSV--PDNVVENAAYIYRKIVSAKLTRGRTMASLISASLYAACREN 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
+ P L D + N+ L + + L + L Q D + F+ K ++ + L
Sbjct: 178 NIPRTLDDIAKAGNVERRILSRDLRTIIKKLGLN-----LNQYDTASFISKISNNMNLKE 232
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+ A DIL + + IT G+ P A+LY+S + +G + S+ + + +
Sbjct: 233 TTKR---GAFDILKRCEEEGITAGKHPVAQAAASLYISCVLNGERVSQKRVSVEAGVSDV 289
Query: 180 TLMKRLI 186
T+ R +
Sbjct: 290 TIRNRTV 296
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 156 ALSELDRMASALGLPRT--VRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVP 213
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++ E+G Y + + L + L P ++ +F L +
Sbjct: 214 RTLDEIGEVSRVSRIEIGRTYRFISRELSLK-----LMPTSPIDYVPRFCSGL--KLKSE 266
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V +IL IT+GR P+G+ AA+Y++++ G + ++ ++ + + E T+
Sbjct: 267 VQSKGVEILRQASEKEITSGRGPTGVAAAAIYIASMLCGERRTQREVADVAGVTEVTIRN 326
Query: 184 RLIEF 188
R E
Sbjct: 327 RYKEL 331
>gi|448352384|ref|ZP_21541172.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
gi|445643145|gb|ELY96198.1| Transcription factor TFIIB cyclin-related protein [Natrialba
hulunbeirensis JCM 10989]
Length = 321
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y + + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASALGVPRS--VREVASVLYRRTLDEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGN 121
L + + ++ E+G Y YI+ E ++ ++ VDP ++ +F L LP
Sbjct: 196 RSLDEIAAVSRVDRMEIGRTYR------YISKELSLEMQPVDPKKYVPRFCSELELP--- 246
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V A +I+ + + +G+ P+G AA+Y +AL K ++ ++ + + E T+
Sbjct: 247 DEVQSKANEIIDTTAEKGLLSGKSPTGYAAAAIYAAALLCNKKKTQREVADVAQVTEVTI 306
Query: 182 MKRLIE 187
R E
Sbjct: 307 RNRYQE 312
>gi|15789590|ref|NP_279414.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235302|ref|YP_001688502.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195247|sp|Q9HSB3.1|TF2B6_HALSA RecName: Full=Transcription initiation factor IIB 6; Short=TFIIB 6
gi|10579944|gb|AAG18894.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726368|emb|CAP13149.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 319
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V SC+Y A RQ
Sbjct: 132 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQA 189
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + + DP ++ +F L G
Sbjct: 190 GVPRSLDEIADVSRVEKAEIARTYRYVVRELGLE-----VAPADPESYVPRFASDL--GL 242
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR++L + K + +G+ P GL AA+Y +AL K +++ + ++ I E T
Sbjct: 243 SDEASHRARELLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVADISEVT 302
Query: 181 LMKR---LIEFENT 191
+ R L+E E+T
Sbjct: 303 IRNRYHELLEAEDT 316
>gi|407465796|ref|YP_006776678.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048984|gb|AFS83736.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 301
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 17/186 (9%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L I SD ++ A Y A+ + +GR + A+ LY ACR S
Sbjct: 119 QAFSELNRLKDKLAI--SDSVIEKAAYIYRKALEKGLVRGRSISALMAAALYAACRDTST 176
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLP 118
P L D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 177 PRNLKDVEQAANIKRKDIARCYRLLVKELDLKMPVTDSIQCVARIASRIGIAEKTKRY-- 234
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
A +L + + ++ G+ P GL AALY+S + +G ++ DI + ++ E
Sbjct: 235 ---------ATKVLKMAQENEVSAGKDPMGLAAAALYLSCVKNGEDKTQRDIAEAANVTE 285
Query: 179 ATLMKR 184
T+ R
Sbjct: 286 VTIRNR 291
>gi|448360606|ref|ZP_21549237.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
gi|445653219|gb|ELZ06091.1| Transcription factor TFIIB cyclin-related protein [Natrialba
asiatica DSM 12278]
Length = 271
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 88 ALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 145
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L + + +N E+G Y + Q L + ++ V+P ++ +F L LP +
Sbjct: 146 RSLDEVAAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELDLP---E 197
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+
Sbjct: 198 EVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQVTEVTIR 257
Query: 183 KRLIE 187
R E
Sbjct: 258 NRYQE 262
>gi|397651191|ref|YP_006491772.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
gi|393188782|gb|AFN03480.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
Length = 273
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 7/185 (3%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++R++ L + + E A Y A R T+ E A+C+Y CR P
Sbjct: 85 AMSELRRLSGMLKLPKYVE--EEAAYLYREAAKRGLTRRIPIETTVAACIYATCRLFKVP 142
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + ++Y E+ + + + L + + + + P+ ++ KF D L +++
Sbjct: 143 RTLNEIASYSKTEKKEIMKAFRVIVRNLNLTPKMLLAR---PTDYVDKFADEL--ELSER 197
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V DIL + IT+G+ P L AALY+++L G + S+ +I ++ + E T+
Sbjct: 198 VRRRTVDILRRANEEGITSGKNPLSLVAAALYIASLLEGERRSQKEIARVTGVSEMTVRN 257
Query: 184 RLIEF 188
R E
Sbjct: 258 RYKEL 262
>gi|393795828|ref|ZP_10379192.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 306
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF + MK L I D ++ A Y AV T+GR + ++ LY ACR+
Sbjct: 120 LSKAFTLLNAMKTKLGI--PDNVIENAAYIYRKAVNSKLTRGRTMASLISASLYAACREN 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ P L D ++ NI L + + L + L Q D S F+ K ++ +
Sbjct: 178 NIPRTLDDIADAGNIERRILSRDLRTIIKKLGLK-----LNQYDTSSFISKISNNM--NL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+K A DIL + IT G+ P A+LY++ + + K S+ + + T
Sbjct: 231 KEKTKRDAFDILKRCELKEITAGKHPVAQAAASLYIACMINNEKISQKKFSSEAGVSDVT 290
Query: 181 LMKRLIEFENT 191
+ R+ + T
Sbjct: 291 IRNRVTLIKKT 301
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A++ N GR E V + LY A RQ
Sbjct: 146 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQA 203
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S ++ EL Y + + L + ++ DP ++ +F RL G
Sbjct: 204 GNPRSLDEISAVSRVDKMELTRTYRYVIRELKLE-----IQPADPGSYVPRFVSRL--GL 256
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ AR++L S KR IT+G+ P GL +A+Y +AL K ++S + ++ I E T
Sbjct: 257 SEETQRVARELLDSAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSEVADISEVT 316
Query: 181 LMKRLIEFENTDSG 194
+ R E + G
Sbjct: 317 IRNRYKELLDASEG 330
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 89/188 (47%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A R
Sbjct: 127 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMA 184
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 185 DTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GL 237
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ ++ +I E T
Sbjct: 238 SDEPERRARQLLKNAKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVT 297
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 298 IRNRYHEL 305
>gi|448455329|ref|ZP_21594509.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
gi|445813931|gb|EMA63904.1| transcription factor TFIIB cyclin-related protein [Halorubrum
lipolyticum DSM 21995]
Length = 209
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 9/194 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ
Sbjct: 21 LKQALGEVDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQA 78
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L G
Sbjct: 79 GTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GL 131
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K I +G+ P GL AA+Y ++L K ++S++ + +I E T
Sbjct: 132 SDEAERRARSLLDTAKSQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVT 191
Query: 181 LMKRLIEFENTDSG 194
+ R E + G
Sbjct: 192 IRNRYHELLEAEDG 205
>gi|448348263|ref|ZP_21537115.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445643361|gb|ELY96413.1| Transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 271
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 88 ALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 145
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L + + +N E+G Y + Q L + ++ V+P ++ +F L LP +
Sbjct: 146 RSLDEVAAVSRVNRMEIGRTYRYISQELGLE-----MEPVNPKKYVPRFCSELDLP---E 197
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+
Sbjct: 198 EVQAKANEIIDTTAEQGMLSGKSPTGYAAAAIYASALLCNEKKTQKEVADVAQVTEVTIR 257
Query: 183 KRLIE 187
R E
Sbjct: 258 NRYQE 262
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 9/195 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ GR E V S LY A RQ
Sbjct: 142 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQA 199
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S ++ E+ Y + + L + ++ DP ++ +F L
Sbjct: 200 GTPRSLDEISAVSRVDKAEVARTYRYVVRELGLE-----VQPADPVSYVPRFASDLDLSD 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++ ARD+L + K I +G+ P GL AA+Y +AL + +++D+ ++ I E T
Sbjct: 255 ETEL--RARDLLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVT 312
Query: 181 LMKRLIEFENTDSGS 195
+ R E + G+
Sbjct: 313 IRNRYHELLEAEDGA 327
>gi|448301022|ref|ZP_21491017.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584536|gb|ELY38851.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 321
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASALGVPRS--VREVASVLYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + ++ VDP ++ +F L +++
Sbjct: 196 RSLDEVAAVSRVERMEIGRTYRYISQELSLE-----MEPVDPKKYVPRFCSEL--SLSEE 248
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y SAL K ++ ++ + + E T+
Sbjct: 249 VQAKANEIIDTTAEKGMLSGKSPTGYAAAAIYASALLCNEKKTQREVADVAQVTEVTIRN 308
Query: 184 RLIE 187
R E
Sbjct: 309 RYQE 312
>gi|408402853|ref|YP_006860836.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363449|gb|AFU57179.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 292
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++ ++K+ L G SD I+ Y A ++ +GR T + A+ +Y +CR+
Sbjct: 110 AFSELGRLKDKL--GLSDAIMEKTAYLYRKAHEKHLVRGRSTSSILAAAIYASCRELGAS 167
Query: 64 FLLIDFSNYLNINVYELGAVY----LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG 119
L D + +I + Y L+L + +AD + ++ S L + T R+
Sbjct: 168 RTLKDVAKATDIKRKAISRSYRILVLELDIKVPLADPMKCIAKIANSAKLTEKTKRM--- 224
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
DT D++ I+ G+ P GL LY+S L +G ++ DI + + E
Sbjct: 225 ----AMDTMNDLIGKE----ISAGKLPMGLAATVLYMSCLANGESKTQKDIADMAGVTEV 276
Query: 180 TLMKRLIEFE 189
T+ R + +
Sbjct: 277 TIRNRFKDLK 286
>gi|329766198|ref|ZP_08257756.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137257|gb|EGG41535.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 262
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF + MK L G D ++ A Y AV T+GR + ++ LY ACR+
Sbjct: 76 LSKAFTLLNAMKTKL--GIPDNVIENAAYIYRKAVNSKLTRGRTMASLISASLYAACREN 133
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ P L D ++ NI L + + L + L Q D S F+ K ++ +
Sbjct: 134 NIPRTLDDIADAGNIERRILSRDLRTIIKKLGLK-----LNQYDTSSFISKISNNM--NL 186
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+K A DIL + IT G+ P A+LY++ + + K S+ + + T
Sbjct: 187 KEKTKRDAFDILKRCELKEITAGKHPVAQAAASLYIACMINNEKISQKKFSSEAGVSDVT 246
Query: 181 LMKRLIEFENT 191
+ R+ + T
Sbjct: 247 IRNRVTLIKKT 257
>gi|284165712|ref|YP_003403991.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284015367|gb|ADB61318.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 323
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 135 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 193 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 247
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ ++ I E
Sbjct: 248 ETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEV 304
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 305 TIRNRYKEL 313
>gi|134046665|ref|YP_001098150.1| transcription initiation factor IIB [Methanococcus maripaludis C5]
gi|189029855|sp|A4G0F2.1|TF2B_METM5 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|132664290|gb|ABO35936.1| Transcription initiation factor IIB (TFIIB) [Methanococcus
maripaludis C5]
Length = 339
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+ R P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSSRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>gi|335441148|ref|ZP_08561869.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334888319|gb|EGM26618.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 325
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + +Y A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTASVYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + ++ DP ++ +FT L
Sbjct: 195 GVPRSLDELTDVSRVEKDEIARTYRYVVRELGLE-----VRPADPESYVPRFTSDL--EL 247
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ AR++LA+ K + + +G+ P GL AA+Y ++L K +++ + ++ I E T
Sbjct: 248 SEEAERRARELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVADISEVT 307
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 308 IRNRYHEL 315
>gi|322369913|ref|ZP_08044475.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320550249|gb|EFW91901.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 320
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 94/198 (47%), Gaps = 9/198 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + +A Y A+ + GR E V SC+Y A RQ
Sbjct: 132 LKQALGEIDRMASAL--GLPDNVREMASVIYRRALNEDLLPGRSIEGVSTSCVYAAARQA 189
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + ++ E+ Y + + L + +K DP ++ +F L
Sbjct: 190 GVPRSLDEITEVSRVDKSEVARTYRYVVRELSLE-----VKPADPESYVPRFASGLEL-- 242
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR++L + K + +G+ P GL AA+Y +AL K +++++ + I E T
Sbjct: 243 SDEAEHRARELLRNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAEVSDVADISEVT 302
Query: 181 LMKRLIEFENTDSGSLTI 198
+ R E + G++ +
Sbjct: 303 IRNRYHELLEAEEGTVAL 320
>gi|238606146|ref|XP_002396638.1| hypothetical protein MPER_03085 [Moniliophthora perniciosa FA553]
gi|215469580|gb|EEB97568.1| hypothetical protein MPER_03085 [Moniliophthora perniciosa FA553]
Length = 136
Score = 57.4 bits (137), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 9 RQMKNALNIGESDEIV-HVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLL 66
R+++ N+ E+V A R Y +AV FTKGR++ V A CLY+ACRQK ++ ++L
Sbjct: 69 RKIQTIANVLRLSEVVCMAATRLYTLAVEHKFTKGRKSLNVVAVCLYVACRQKETRNYML 128
Query: 67 IDFSNYL 73
IDFS+ L
Sbjct: 129 IDFSDLL 135
>gi|167045079|gb|ABZ09742.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8I13]
Length = 304
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 17/186 (9%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L+I SD ++ A Y A+ + +GR + AS LY ACR S
Sbjct: 122 QAFSELNRLKDKLSI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTST 179
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRLLP 118
P L D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 180 PRNLKDVEQAANIKRKDIARCYRLLVKELDLHMPVTDSVQCVARIASKIGIQEKTKRF-- 237
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
A +L + + ++ G+ P GL AALY++ + +G ++ DI + ++ E
Sbjct: 238 ---------ATKVLKRAQENEVSAGKDPMGLAAAALYLACVKNGEDKTQRDIAEAANVTE 288
Query: 179 ATLMKR 184
T+ R
Sbjct: 289 VTIRNR 294
>gi|291333532|gb|ADD93228.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C54]
Length = 311
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 12/189 (6%)
Query: 8 MRQMKN-ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLL 66
MR+M+ A N+ I A Y A+ GR E V + LY ACRQ+ P L
Sbjct: 128 MREMQAVATNLKLPRRIQETAAFIYRRAIQEQSLSGRAIEMVACAALYAACRQEGVPRTL 187
Query: 67 IDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 126
+ S + + E+ Y QV+ A + + + + P +L + +L + KV
Sbjct: 188 TEISRHSRYSRKEISRTY----QVMVKALKMHSMPPL-PEDYLPRICSKL--ELSPKVEG 240
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR-- 184
ARD+L + + D T P L AA+Y++++ + + + D+ + + E T+ R
Sbjct: 241 AARDLLRAAQ-DVPLTNSVPISLAAAAVYIASIVNNERRKQKDVARAADLTEVTIRSRYK 299
Query: 185 -LIEFENTD 192
+ +F N D
Sbjct: 300 EMAQFLNID 308
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ++ + + Y A+ + GR E V S LY A R
Sbjct: 136 LKQALGEIDRMASALGLPQN--VRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMA 193
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + EL Y + + L + ++ DP +L +F L G
Sbjct: 194 GNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISDL--GL 246
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S + + I E T
Sbjct: 247 SEETQRQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVT 306
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 307 IRNRYKEL 314
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 196 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 250
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL AA+Y +AL K +++++ ++ I E
Sbjct: 251 ETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEV 307
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 308 TIRNRYKEL 316
>gi|222476043|ref|YP_002564564.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|345007208|ref|YP_004810060.1| Cyclin domain-containing protein [halophilic archaeon DL31]
gi|354612343|ref|ZP_09030294.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
gi|222454414|gb|ACM58678.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|344322834|gb|AEN07687.1| Cyclin domain protein [halophilic archaeon DL31]
gi|353191188|gb|EHB56696.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
Length = 331
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
++R++ + L + SD I A + + A + +GR E + + +Y ACR +P
Sbjct: 145 GLGEVRRLASTLEL--SDSIRDQACQLFRSAQNEDLLRGRSIEAIATASVYGACRCNDRP 202
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
+L + ++ + + + Y L L + P F+ +F L
Sbjct: 203 VILDEVADSARVELSRVRNAYKTLNTELGLPTPPR-----RPQSFIPRFASEL------D 251
Query: 124 VCDTAR----DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
V DT R ++ + I+ G +P+G+ A LY +A G F+++D+ ++
Sbjct: 252 VADTVRQRAFELAKGAEATIISNGCQPTGVAAACLYKAAREQGQFFTQTDLAEVAETTPV 311
Query: 180 TLMKRLIEFENTD 192
T+ R E E D
Sbjct: 312 TIRTRWNELEEVD 324
>gi|448589388|ref|ZP_21649547.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445735816|gb|ELZ87364.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 288
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++R++ +AL++ + I A + A + +GR E A+C+Y ACR
Sbjct: 111 AFTEIRRLTSALSL--PNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIA 168
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
+ + + E A Y L + L + + DP+ ++ +F +L ++
Sbjct: 169 RSVEEVCDVAKATEAEHHAAYRALNRDLGLP-----VAPTDPTEYIPRFATKL--DLDRD 221
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V AR+ +A D + G+ P G+ A LY +A G +++D + + TL K
Sbjct: 222 VERRAREYVADAHEDGLVAGKNPCGVAAACLYTAARDVGADCTQADAADVADVTPVTLRK 281
Query: 184 RLIEFEN 190
+E +
Sbjct: 282 TYVELRD 288
>gi|448349399|ref|ZP_21538241.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
gi|445640642|gb|ELY93729.1| transcription factor TFIIB cyclin-related protein [Natrialba
taiwanensis DSM 12281]
Length = 318
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 14/186 (7%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + V Y A+ + +GR E V + LY CRQ+ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEDIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGN 121
L + + I E+ Y YI++E + L +DP ++ +F+ +L LP
Sbjct: 195 RSLEEITEVSRIERIEVSRTYR------YISNELGLELLPIDPKQYVPRFSSKLDLP--- 245
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
++V A +I+ D + +GR PSG AA+Y +AL K ++ ++ + + E T+
Sbjct: 246 QEVEAKANEIIEETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTI 304
Query: 182 MKRLIE 187
R E
Sbjct: 305 RNRYQE 310
>gi|336254453|ref|YP_004597560.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338442|gb|AEH37681.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 320
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL G D + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 LKYALSEIDRMVSAL--GVPDPVKETASVIYRRALEKDLIRGRSIEGVATSALYTACRKE 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ ++ E+G Y YIADE + L+ +P F+ +F L G
Sbjct: 187 DIPRSLEEVTSVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSELDVG 240
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
K V A +I+ + +G+ P+G
Sbjct: 241 --KDVETKAVEIIDETTEQGLHSGKSPTGF 268
>gi|448371933|ref|ZP_21557052.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
gi|445647024|gb|ELZ00005.1| transcription factor TFIIB cyclin-related protein [Natrialba
aegyptia DSM 13077]
Length = 318
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 14/186 (7%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + V Y A+ + +GR E V + LY CRQ+ P
Sbjct: 137 ALSEIDRMASALGVPRS--VREVTSMIYRRALQEDLIRGRSIEGVATAALYAGCRQEGIP 194
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGN 121
L + + I E+ Y YI++E + L +DP ++ +F+ +L LP
Sbjct: 195 RSLEEITEVSRIERIEVSRTYR------YISNELGLELLPIDPKQYVPRFSSKLNLP--- 245
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
++V A +I+ D + +GR PSG AA+Y +AL K ++ ++ + + E T+
Sbjct: 246 QEVEAKANEIIEETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQKEVADVAQVTEVTI 304
Query: 182 MKRLIE 187
R E
Sbjct: 305 RNRYQE 310
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 196 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 250
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL AA+Y +AL K +++++ ++ I E
Sbjct: 251 ETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEV 307
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 308 TIRNRYKEL 316
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 196 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 250
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL AA+Y +AL K +++++ ++ I E
Sbjct: 251 ETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEV 307
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 308 TIRNRYKEL 316
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 17/188 (9%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +MK L++ SD I A Y A+ + KGR + A+CLY ACR+
Sbjct: 124 LQQALLELSKMKEKLSL--SDAIAEKASYIYRKALEKKLVKGRSIASLVAACLYAACRES 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL----YIADESNVLKQVDPSIFLHKFTDRL 116
P L + + + I E+ A Y + + L + D + + ++ + L + T R
Sbjct: 182 EAPRTLREVAASIGIKRKEISATYRLIFKELDLKMPVIDSVSCIAKIASNAELSEKTKRY 241
Query: 117 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 176
A IL ++ ++ G+ P GL +ALY++++ ++ +I I
Sbjct: 242 -----------AIKILKKAEKQNMSAGKHPMGLAASALYLASIDLEEFRTQKEIADAAGI 290
Query: 177 CEATLMKR 184
E T+ R
Sbjct: 291 TEVTVRNR 298
>gi|448321963|ref|ZP_21511437.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
gi|445602545|gb|ELY56520.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
amylolyticus DSM 10524]
Length = 321
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M + L I S + VA Y A+ R+ +GR E V LY ACR + P
Sbjct: 138 ALSETDRMASGLGIPRS--VREVASVLYRRALERDLIQGRSIEGVATGTLYAACRLEGMP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y YIA E + K VDP ++ +F L +
Sbjct: 196 RSLEEVAMVSRVDRKEIGRTYR------YIAKELELGTKPVDPKQYVPRFCSEL--ELSP 247
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
V A +I+ + + I +G+ P+G AA+Y+SAL K ++ ++ + + E T+
Sbjct: 248 TVQAKASEIIDTTAKKGILSGKSPTGYAAAAIYISALFCDEKRTQREVADVSQVTEVTIR 307
Query: 183 KRLIE 187
KR E
Sbjct: 308 KRYQE 312
>gi|448579035|ref|ZP_21644351.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445724388|gb|ELZ76021.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 288
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++R++ +AL++ + I A + A + +GR E A+C+Y ACR
Sbjct: 111 AFTEIRRLTSALSL--PNHIREQACALFESAQNEDLLRGRSLEGFAAACVYAACRVAGIA 168
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
+ + + E A Y L + L + + DP+ ++ +F +L ++
Sbjct: 169 RSVEEVCDVAKATESEHHAAYRALNRDLGLP-----VAPTDPTEYIPRFATKL--DLDRD 221
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V AR+ +A + D I G+ P G+ A LY +A G +++D + + TL K
Sbjct: 222 VERRAREYVADAREDGIVAGKNPCGVAAACLYTAARDVGADCTQADAADVADVTPVTLRK 281
Query: 184 RLIEFEN 190
+ +
Sbjct: 282 TYVALRD 288
>gi|448301306|ref|ZP_21491299.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
gi|445584042|gb|ELY38366.1| transcription initiation factor IIB [Natronorubrum tibetense GA33]
Length = 325
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ES + A Y A+ + GR E V + LY + RQ
Sbjct: 138 LKQALGEIDRMASALGLPES--VRETASVIYRRALEEDLLPGRSIEGVATASLYASARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S + E+ Y + + L + +K DP ++ +F L
Sbjct: 196 GTPRSLDEISAVSRVEKDEVARTYRYVVRELGLE-----VKPADPEQYVPRFASDL--DL 248
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L++ K I +G+ P GL AA+Y +AL K +++D+ ++ +I E T
Sbjct: 249 SDETERRARSLLSTAKEKGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVANISEVT 308
Query: 181 LMKRLIEFENTDSGS 195
+ R E + G+
Sbjct: 309 IRNRYHELLEAEEGA 323
>gi|110669504|ref|YP_659315.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627251|emb|CAJ53741.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 314
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 13/180 (7%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++R++ AL++ + +I A + A + + +GR E A+C+Y ACR
Sbjct: 130 AFTEIRRLTGALSLPK--QIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVA 187
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG-N 121
+ + ++ E A Y L + L + + +DP+ +L +F L LP
Sbjct: 188 RTIEEITDIAKATSAEQRAAYTALNRELGLP-----IGPIDPAQYLPRFASELELPSNIE 242
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
++ C+ I A I GR PSG+ A LY +A G + ++ I + TL
Sbjct: 243 RRACEYISMITA----QGIGAGRNPSGVAAACLYTAARDIGFELTQQTAADIADVTPVTL 298
>gi|322788519|gb|EFZ14161.1| hypothetical protein SINV_13195 [Solenopsis invicta]
Length = 257
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 28/121 (23%)
Query: 350 DIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGL 409
DIDD E+D Y+ +E+E K +W ++N +YL +Q KE K +
Sbjct: 9 DIDDEELDSYILSEKESQSKSALWNKVNADYLIQQKEKEEKRLKEKEEGKP--------- 59
Query: 410 QAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVL 469
E++++R K+ PA TA EA +ML +K++SSKINY+VL
Sbjct: 60 -------------------ERKRRRTTSKKHRTPANTAGEAIEKMLQEKKISSKINYEVL 100
Query: 470 E 470
+
Sbjct: 101 K 101
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M + L G D + A Y A+ + GR E V S LY A RQ
Sbjct: 141 LKQALGEIDRMASGL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQA 198
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + ++ ++ E+ Y + + L + ++ DP ++ +F L L
Sbjct: 199 GTPRSLDEIASVSRVDKDEIARTYRYVVRELKLE-----IQPADPEQYVPRFASDLDLSD 253
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR +L + K + + +G+ P GL AA+Y ++L K ++S++ + +I E
Sbjct: 254 ESER---RARKLLQNAKEEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSDVANISEV 310
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 311 TIRNRYHEL 319
>gi|448524328|ref|ZP_21619310.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445700398|gb|ELZ52399.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 269
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G D + A Y A+ + GR E V + LY A RQ P
Sbjct: 84 ALGEIDRMASAL--GLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTP 141
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+ Y + + L + ++ DP ++ +F L G + +
Sbjct: 142 RSLDEIAGVSRVEKDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GLSDE 194
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
AR +L + K I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+
Sbjct: 195 AERRARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRN 254
Query: 184 R---LIEFENT 191
R L+E E++
Sbjct: 255 RYHELLEAEDS 265
>gi|374635845|ref|ZP_09707435.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
gi|373560981|gb|EHP87227.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
Length = 821
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + S ++ E+G Y L +
Sbjct: 660 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCRVPRTLDEISEASRVDRKEIGRTYRFLSR 719
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 148
L I L +P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 720 ELGIK-----LAPTNPIDYVPRFASELGLPG---EVESKAIAILQKAAEKGLTSGRGPTG 771
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ AA+Y++++ G + ++ D+ ++ + E T+ R E
Sbjct: 772 VAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIRNRYKEL 811
>gi|448303109|ref|ZP_21493059.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594116|gb|ELY48283.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 323
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 135 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 193 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 247
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ + I E
Sbjct: 248 ETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEV 304
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 305 TIRNRYKEL 313
>gi|359417747|ref|ZP_09209816.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
gi|358031840|gb|EHK00675.1| transcription initiation factor IIB [Candidatus Haloredivivus sp.
G17]
Length = 306
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 4 AFDDMRQMKNALNIGESDEIVHV-AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
A ++ M + LN+ ES VH R Y AV + +GR E + ++ +Y+ R++
Sbjct: 165 ALSELNSMISNLNLPES---VHEETARLYEKAVDQGLVRGRSMESIISALIYIVARKQGT 221
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGN 121
P L + S+ I E+G Y Y+A E + + P ++ +F +L G
Sbjct: 222 PRTLDEISDASGIEKREIGRAY------RYVARELGLRILPAKPQDYVPRFAGKLQLSG- 274
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAAL 154
+V AR+IL + + +G+ P+GL AAL
Sbjct: 275 -EVQARARNILKEARERDLLSGKGPTGLAAAAL 306
>gi|385804962|ref|YP_005841362.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730454|emb|CCC41793.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 314
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 13/180 (7%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++R++ AL++ + +I A + A + + +GR E A+C+Y ACR
Sbjct: 130 AFTEIRRLTGALSLPK--QIRDDACSLFRSAQSEDLLRGRSLEGFAAACVYAACRVAGVA 187
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGG-N 121
+ + ++ E A Y L + L + + +DP+ +L +F L LP
Sbjct: 188 RTIEEITDIAKATSAEQRAAYTALNRELGLP-----IGPIDPAQYLPRFASELELPSDIE 242
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
++ C+ ++ + I GR PSG+ A LY +A G + ++ I + TL
Sbjct: 243 RRACE----YISMITAQGIGAGRNPSGVAAACLYTAARDIGFELTQQTAADIADVTPVTL 298
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 195 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFISDLDLSD 249
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL AA+Y +AL K +++D+ + I E
Sbjct: 250 ETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEV 306
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 307 TIRNRYKEL 315
>gi|332795784|ref|YP_004457284.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
gi|332693519|gb|AEE92986.1| transcription initiation factor TFIIB [Acidianus hospitalis W1]
Length = 291
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 7/173 (4%)
Query: 16 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 75
N+G + A Y A+ + KGR E+V A+ +Y ACR+ + P L + S +
Sbjct: 114 NLGLPKAVKEEAAIIYRKALEKKLIKGRSIEEVVAASVYAACRKMNIPTTLDEISKATSA 173
Query: 76 NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASM 135
N E+G Y L + ++ + DP ++ K L G + KV A +I+
Sbjct: 174 NKKEIGKAYR-----LLLREDVTEVPASDPKYYVMKIAS--LLGLSGKVMTAATEIVERA 226
Query: 136 KRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
K+ IT+G+ P+ + AA+Y++A +G + S+ +I ++ + + T+ R E
Sbjct: 227 KKAGITSGKDPASIAAAAVYIAANINGERRSQREISEVSGVTQVTIRNRYREI 279
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 11/196 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + + Y A+ + GR E V + LY A RQ
Sbjct: 154 LKQALGEIDRMASAL--GLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQA 211
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + + + E+ Y + + L + ++ DP ++ +F L L
Sbjct: 212 GTPRSLDEIAAVSRVEKAEIARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 266
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ ARD+L++ K + +G+ P GL AA+Y +AL K +++D+ + I E
Sbjct: 267 ETER---RARDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEV 323
Query: 180 TLMKRLIEFENTDSGS 195
T+ R E D G+
Sbjct: 324 TIRNRYKELLEADGGA 339
>gi|399578968|ref|ZP_10772712.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
gi|399235994|gb|EJN56934.1| Transcription factor TFIIB cyclin-related protein [Halogranum
salarium B-1]
Length = 318
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 9/198 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ ++R++ +AL G +D I A + + A N GR E + A+ +Y CR
Sbjct: 127 LAHGLGEVRRITSAL--GLADSIREQACQLFRSAQRENLLLGRSIEAIAAASVYGVCRCH 184
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+P D + ++ + Y L + L + + V P + K L
Sbjct: 185 GRPITRDDLVDVARVDHSGVTNAYKTLNRELGLPTQP-----VAPQSLIPKLASEL--DV 237
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K+V AR + IT G +PSG+ A LY+++ HG +++ + + AT
Sbjct: 238 EKRVRRRARTLAERAHETSITNGYQPSGVAAACLYLASREHGESLTQTQVAEAAGTTSAT 297
Query: 181 LMKRLIEFENTDSGSLTI 198
L R E G + +
Sbjct: 298 LRARRAELTELIDGEVRV 315
>gi|161528849|ref|YP_001582675.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340150|gb|ABX13237.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 309
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
A N+G + A Y A+ +N +G + A +Y+ C+Q P D +
Sbjct: 126 ASNLGIPENAKEHAAYIYRKALEKNLIRGSSIHTMVAGSVYVTCKQLGIPRSADDTTRVS 185
Query: 74 NINVYELGAVYLQLCQVLYI---ADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 130
NI+ L Y +L + L + E++ + QV S+ + + T RL A
Sbjct: 186 NISRRRLSKAYKRLVKNLDLKIDPSETDFVTQVANSLSVSEKTKRL-----------AIK 234
Query: 131 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
I+ +K++ I G++P G+ AA+Y+SA+ + S + I K+ +I T+ K
Sbjct: 235 IINDVKKEKIHVGKRPLGITAAAVYLSAINYDEPKSMAKISKVTNISTVTIRK 287
>gi|292655824|ref|YP_003535721.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448289811|ref|ZP_21480974.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448570851|ref|ZP_21639362.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|448595749|ref|ZP_21653196.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|14195256|sp|Q9YGA5.1|TFB2_HALVD RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|5410473|gb|AAD43074.1|AF143693_1 transcription factor B [Haloferax volcanii]
gi|291372841|gb|ADE05068.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445581328|gb|ELY35689.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445722769|gb|ELZ74420.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445742203|gb|ELZ93698.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY + R
Sbjct: 144 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYASARMA 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + +K DP ++ +F L G
Sbjct: 202 GTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GL 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L K I +G+ P GL AA+Y +AL K ++S++ + I E T
Sbjct: 255 SDEAERQARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVT 314
Query: 181 LMKRLIEFENTDSGSL 196
+ R E G+L
Sbjct: 315 IRNRYKELLEVQDGTL 330
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 195 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 249
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A++Y +AL K +++++ + I E
Sbjct: 250 ETERM---ARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEV 306
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 307 TIRNRYKEL 315
>gi|448540715|ref|ZP_21623636.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549017|ref|ZP_21627793.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555808|ref|ZP_21631737.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445708868|gb|ELZ60703.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445713706|gb|ELZ65481.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717331|gb|ELZ69049.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 332
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY + R
Sbjct: 144 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYASARMA 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + +K DP ++ +F L G
Sbjct: 202 GTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GL 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L K I +G+ P GL AA+Y +AL K ++S++ + I E T
Sbjct: 255 SDEAERQARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVT 314
Query: 181 LMKRLIEFENTDSGSL 196
+ R E G+L
Sbjct: 315 IRNRYKELLEVQDGTL 330
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ++ + + Y A+ + GR E V S LY A R
Sbjct: 136 LKQALGEIDRMASALGLPQN--VRETSSVIYRRALGDDLLPGRSIEGVATSALYAAARMA 193
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + EL Y + + L + ++ DP +L +F L G
Sbjct: 194 GNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISDL--GL 246
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S + + I E T
Sbjct: 247 SEETQRQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVT 306
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 307 IRNRYKEL 314
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A D+ ++K+ +++ + ++ A Y A+ + +GR + A+ LY ACR
Sbjct: 118 LRQALSDLNKLKDKVSVPAN--VLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDT 175
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRL 116
P L D S+ N+ ++ Y L L + D + ++ + + + T R
Sbjct: 176 ETPRTLKDVSDAANVKRKDIARCYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRY 235
Query: 117 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 176
A +L + + G+ P GL ALY+S + +G+ ++ D+ + +
Sbjct: 236 -----------AVKVLKDAQERKESAGKDPMGLAATALYLSCVKNGVSITQRDLAEAAGV 284
Query: 177 CEATLMKR 184
E T+ R
Sbjct: 285 TEVTIRNR 292
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 195 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 249
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A++Y +AL K +++++ + I E
Sbjct: 250 ETERM---ARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEV 306
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 307 TIRNRYKEL 315
>gi|448506641|ref|ZP_21614597.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445699591|gb|ELZ51615.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
Length = 179
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G D + A Y A+ + GR E V + LY A RQ P L + + +
Sbjct: 5 LGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGVSRVE 64
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
E+ Y + + L + ++ DP ++ +F L G + + AR +L + K
Sbjct: 65 KDEIARTYRYVVRELKLE-----IQPADPESYVPRFASDL--GLSDEAERRARSLLDTAK 117
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR---LIEFENT 191
I +G+ P GL AA+Y ++L K ++S++ ++ +I E T+ R L+E E++
Sbjct: 118 EQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRYHELLEAEDS 175
>gi|290974267|ref|XP_002669867.1| predicted protein [Naegleria gruberi]
gi|284083420|gb|EFC37123.1| predicted protein [Naegleria gruberi]
Length = 738
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 36/210 (17%)
Query: 39 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESN 98
+TK + + V A LY+ CR++ P L+D S +++ELG Y ++C+ I
Sbjct: 311 YTKEKWMDGVIAGALYVVCRREKLPITLLDLSEVTGYSIFELGRKYKEICKTFNI----- 365
Query: 99 VLKQVDPSIFLHKFTDRL-------LPGGNKKV-CDTARDILASMKR-------DWITTG 143
QVDP + L DR+ N +V T DI M+R + + +G
Sbjct: 366 ---QVDP-LDLETLCDRMTNEFSDCFTDENGQVNIKTKTDINLRMRRIIRVAMKECLDSG 421
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 203
R+P L AAL ++ + + S++ + H+ EAT+ +R E + M
Sbjct: 422 RRPIALVAAALLLALQSCSIDMKLSEVARSTHVGEATIRERFNELKQL---------LMN 472
Query: 204 RKKEL---HEGVAANLPNNGPKVSGMNEVL 230
K+L HE LP + P + + E L
Sbjct: 473 LSKQLPWAHEITLKTLPRHLPFILDVVEQL 502
>gi|407462691|ref|YP_006774008.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046313|gb|AFS81066.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 323
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF + N LN+ E+ + A Y AV + +G + A+ +Y +C+Q
Sbjct: 131 LVKAFTVLDAYSNKLNMPENAK--EHAAYIYRKAVDKKIIRGNSIPSMMAASVYASCKQL 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + + S NIN +L Y +L + L I +VD + +
Sbjct: 189 GIPRSVDEISKITNINRKKLLRSYKRLVKKLEI--------KVDSTGINYVSKISSSLSV 240
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K A IL K++ I G+ P G+ A++Y+SA+ HG + I + +I T
Sbjct: 241 SEKTSRLANKILHDAKQEKIHVGKNPIGVTAASIYLSAINHGEHVPIARIARKTNISTVT 300
Query: 181 LMK 183
+ K
Sbjct: 301 IRK 303
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 196 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 250
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL AA+Y +AL K +++++ ++ I E
Sbjct: 251 ETERM---ARELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEV 307
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 308 TIRNRYKEL 316
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 195 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 249
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A++Y +AL K +++++ ++ I E
Sbjct: 250 ETERM---ARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSEVASISEV 306
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 307 TIRNRYKEL 315
>gi|448730858|ref|ZP_21713162.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
gi|445793035|gb|EMA43630.1| transcription initiation factor TFB [Halococcus saccharolyticus DSM
5350]
Length = 334
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M +AL + S + VA Y A++ + +GR E V LY ACR++ P
Sbjct: 152 ALSETDRMASALGVPRS--VREVASVIYRRALSDDLIRGRSIEAVATGALYAACRKEGIP 209
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + ++ + E+G Y YIA E + ++ DP ++ +F L ++
Sbjct: 210 RSLEEVTHVARVEQKEIGRTY------RYIARELELGMRPTDPQKYVPRFCSAL--DLSE 261
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +++ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 262 EVQSKANEVIEASVAEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIR 321
Query: 183 KRLIE 187
R E
Sbjct: 322 NRYQE 326
>gi|41615067|ref|NP_963565.1| hypothetical protein NEQ276 [Nanoarchaeum equitans Kin4-M]
gi|40068791|gb|AAR39126.1| NEQ276 [Nanoarchaeum equitans Kin4-M]
Length = 315
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++++M + LN+ + E A R Y V + +GR + A LYL R+ + P
Sbjct: 116 ALHELKKMVDKLNMPKYVE--EEAARIYQKVVEKGLARGRNINTLLAGTLYLVIREYNIP 173
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L + I+ ++ Y + + L I K + P+ F++++ L LP
Sbjct: 174 RTLEELEKATGISKKDIAKAYRLIVRELGIKP-----KPISPADFVYRYASELNLP---P 225
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V TA +I+ K+ I +GR P G+ AALY++A+ HG I +I + E T+
Sbjct: 226 EVTATAIEIIEEAKKKNIVSGRGPQGIAAAALYIAAIKHGKYVPLKKIGEIAKVTEVTIK 285
Query: 183 KRLIEFENT 191
R E N+
Sbjct: 286 NRYKEIINS 294
>gi|16081990|ref|NP_394404.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195242|sp|Q9HJM2.1|TF2B2_THEAC RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10640260|emb|CAC12074.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 307
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G +I A Y AV +N +GR E + + +Y ACR+ + P L + S +N
Sbjct: 133 LGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEISKASEVN 192
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
++G Y L + L + LK P ++ +F ++L +K+ + DI+
Sbjct: 193 KKKIGKAYRHLAKELDLN-----LKPTTPFSYISQFCNKL--DLDKQAIVISEDIVRQAM 245
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 246 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 297
>gi|448332083|ref|ZP_21521331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|445627928|gb|ELY81242.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 354
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 166 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 223
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + EL Y + + L + +K DP ++ +F L L
Sbjct: 224 GTPRSLDEISAVSRVEKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 278
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A++Y +AL K +++++ + I E
Sbjct: 279 ETERM---ARELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEV 335
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 336 TIRNRYKEL 344
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ++ + A Y A+A + GR E V + LY + RQ
Sbjct: 136 LKQALGEIDRMASALGLPQA--VRETASVIYRRALAEDLLPGRSIEGVATAALYASARQA 193
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ ++ EL Y + + L + ++ DP ++ +F L G
Sbjct: 194 GTPRSLDEIASVSRVDKMELTRTYRYVVRELKLE-----IQPADPEQYVPRFASDL--GL 246
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR++L + K I +G+ P GL AA+Y +AL K ++S + + +I E T
Sbjct: 247 SDEAERRARELLRTAKEAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSSVANISEVT 306
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 307 IRNRYKEL 314
>gi|302692026|ref|XP_003035692.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
gi|300109388|gb|EFJ00790.1| hypothetical protein SCHCODRAFT_50631 [Schizophyllum commune H4-8]
Length = 331
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 4/160 (2%)
Query: 23 IVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 82
I +AK+ Y KG+ E + A+C+++ACRQ P +F + +++ LG
Sbjct: 140 ISDIAKQLYKRVHDEGVLKGKPQEAITAACIFIACRQAHVPRTFREFCDLTHVSKKLLGF 199
Query: 83 VYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWIT 141
+ +A ++ P L ++ ++L LP + +C DI+ + I
Sbjct: 200 CCRTISLTFNLAPGASTNPSAGPENILPRYFNQLDLPTYVQSIC---HDIIVEARNHGIA 256
Query: 142 TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
GR P + G A+Y + G S +I + E T+
Sbjct: 257 DGRSPVSIAGGAIYFTCHLLGKPKSLREISSAASVSEGTI 296
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 82/188 (43%), Gaps = 17/188 (9%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A D+ ++K+ ++I + ++ A Y A+ + +GR + A+ LY ACR
Sbjct: 120 LRQALSDLNKLKDKVSIPAN--VLEKAAYIYRKALEKKLVRGRSISAMIAASLYAACRDT 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRL 116
P L D ++ N+ ++ Y L L + D + ++ + + + T R
Sbjct: 178 ETPRTLKDVADAANVKRKDIARCYRLLHHELELKMPVVDSIQCIARISSKLEISEKTKRY 237
Query: 117 LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI 176
A +L + + G+ P GL ALY+S + +G+ ++ D+ + +
Sbjct: 238 -----------AVKVLKEAQERKESAGKDPMGLAATALYLSCVKNGVSITQRDLAEAAGV 286
Query: 177 CEATLMKR 184
E T+ R
Sbjct: 287 TEVTIRNR 294
>gi|291333561|gb|ADD93256.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S08-C82]
Length = 242
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 31 YGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90
Y AV + +GR E V A+ LY ACRQ P L + E+G Y + +
Sbjct: 82 YKKAVDKRLIRGRSIEGVAAASLYAACRQCGVPRTLDEIGQASRTGRKEIGRTYRFMVRE 141
Query: 91 LYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 150
L + + P ++ +F L G + V A +++ + + +T+GR P+G+
Sbjct: 142 LKMK-----IMPTGPEDYISRFCSGL--GLDADVEAKAYELIKAAQEKELTSGRGPTGIA 194
Query: 151 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ +Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 195 ASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYKEL 232
>gi|448739810|ref|ZP_21721814.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
gi|445798476|gb|EMA48880.1| transcription initiation factor TFB [Halococcus thailandensis JCM
13552]
Length = 323
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 16/196 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++AF ++ +M +AL + +S + A Y A+ GR E V + +++A RQ
Sbjct: 133 LKQAFAEIERMASALGLPQS--VRETAGVIYRRAIEDGLLPGRSIEGVATAAIHIASRQA 190
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
+ P L + + + Y Y+ E ++ L DP +L +F L
Sbjct: 191 NIPRSLDTLAEVSRVEKLSITRTYR------YVTRELDINLPPADPLEYLPRFVSDL--D 242
Query: 120 GNKKVCDTARDILASMKRDWIT--TGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+ +V +R++L ++ D + +G+ P GL AA+Y +L K ++ + ++ I
Sbjct: 243 LSDEVEHRSRELLETVSEDEPSYLSGKNPVGLAAAAVYAGSLLCNEKVTQVAVGEVADIS 302
Query: 178 EATLMKR---LIEFEN 190
+ T+ R L+EF++
Sbjct: 303 QVTIRNRYTELLEFQD 318
>gi|448335856|ref|ZP_21524987.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
gi|445615482|gb|ELY69129.1| transcription initiation factor TFB [Natrinema pellirubrum DSM
15624]
Length = 308
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 9/181 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ ++R++ +AL + E+ I A + + A + +GR E + A+ +Y ACR
Sbjct: 125 LAHGLSEVRRISSALELSET--IRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCN 182
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+P L D + + + Y L L + + V PS F+ + L
Sbjct: 183 GRPRTLDDITESARVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DV 235
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ ++ AR + + + TTG +PSG A LY + G ++SD+ + ++ T
Sbjct: 236 SDQIRQRARQLAEASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVT 295
Query: 181 L 181
+
Sbjct: 296 V 296
>gi|257076877|ref|ZP_05571238.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 305
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 11/185 (5%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G +I A Y AV +N +GR E + + +Y +CR + P L + S +N
Sbjct: 131 LGIPKDIKESAALIYRKAVEKNLIRGRSIESIVCASIYASCRMINIPRTLDEISKVSEVN 190
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
++G Y L + L + L+ P ++ +F ++L +K+V + I+
Sbjct: 191 KKKIGKAYRHLAKELALN-----LQPTTPYSYVSQFCNKL--DLDKQVIMDSEHIIRLAG 243
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 196
++TG+ P+G+ AA+Y++A+ +G + ++ D+ ++ + E T+ R E S L
Sbjct: 244 ESGLSTGKGPTGIAAAAIYIAAMKNGKQRTQKDVARVSGVTEVTIRNRYKEI----SKKL 299
Query: 197 TIEDF 201
I+D
Sbjct: 300 GIDDV 304
>gi|313127037|ref|YP_004037307.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288496|ref|ZP_21479694.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293402|gb|ADQ67862.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445568881|gb|ELY23456.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 343
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ES + A Y A+ + GR E + + L+ A R
Sbjct: 146 LKQALGEIDRMASALGLPES--VRETASVIYRRALEDDLLPGRSIEGIATASLHAAARMA 203
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPG 119
P L + ++ ++ E Y + + L + +K DP+ +L +F +D +P
Sbjct: 204 QVPRSLDEVAHVSRVDEEEFERAYRYIVRELSLE-----IKPADPTEYLPRFASDIDVP- 257
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+ TAR++L + K I +G+ P GL AALY +A K ++SD+ + I E
Sbjct: 258 --KETERTARELLENAKTVGIHSGKSPVGLAAAALYAAAQLTNEKVTQSDVSDVTDISEV 315
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 316 TIRNRYQEL 324
>gi|435846952|ref|YP_007309202.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433673220|gb|AGB37412.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + S + E+ Y + + L + ++ DP ++ +F L
Sbjct: 196 GTPRSLDEISAVSRVGKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASELEL-- 248
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + + +G+ P GL AA+Y +AL K +++D+ ++ I E T
Sbjct: 249 SDETERRARSLLQTAKEEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVT 308
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 309 IRNRYHEL 316
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + + Y A+ + GR E V + LY A RQ
Sbjct: 154 LKQALGEIDRMASAL--GLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQA 211
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + E+ Y + + L + ++ DP ++ +F L L
Sbjct: 212 GTPRSLDEISAVSRVEKAEIARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 266
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ A D+L++ K + +G+ P GL AA+Y +AL K +++D+ + I E
Sbjct: 267 ETER---RAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEV 323
Query: 180 TLMKRLIEFENTDSGS 195
T+ R E D G+
Sbjct: 324 TIRNRYKELLEADGGA 339
>gi|403413738|emb|CCM00438.1| predicted protein [Fibroporia radiculosa]
Length = 353
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 15/191 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +AF D+ + ++ ++ I +AK+ Y + +G+ + V A+C+++ACRQ
Sbjct: 131 LLQAFRDIASWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQA 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ---------VDPSIFLHK 111
P + N +++ LG Y L Q + ++ P L +
Sbjct: 189 HVPRTFREICNLTHVSKKVLGQCYKALEQAFNLTPGASATTDRHLTTPAAARGPEDLLVR 248
Query: 112 FTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDI 170
+ + L LP + +C DI+ + I GR P + G A+Y + G S DI
Sbjct: 249 YCNHLDLPPNVQPICS---DIIIQARELGIADGRSPVSIAGGAIYFTCHLLGKVKSAKDI 305
Query: 171 VKIVHICEATL 181
+ + E T+
Sbjct: 306 STVAGVSEGTI 316
>gi|284163770|ref|YP_003402049.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|448388030|ref|ZP_21564970.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|284013425|gb|ADB59376.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|445670681|gb|ELZ23278.1| transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 319
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M ++L I S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 138 ALSEIDRMASSLGIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + ++ VDP + +F L +++
Sbjct: 196 RSLEEVAAVSRVERKEIGRTYRYVAQELSLE-----MEPVDPKQYTPRFCSEL--DLSEE 248
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ +I ++ + E T+
Sbjct: 249 VQAKATEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREIAEVAQVTEVTIRN 308
Query: 184 RLIE 187
R E
Sbjct: 309 RYQE 312
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + + Y A+ + GR E V + LY A RQ
Sbjct: 183 LKQALGEIDRMASAL--GLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQA 240
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S + E+ Y + + L + ++ DP ++ +F L L
Sbjct: 241 GTPRSLDEISAVSRVEKAEIARTYRYVVRELGLE-----VQPADPESYVPRFASDLDLAD 295
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ A D+L++ K + +G+ P GL AA+Y +AL K +++D+ + I E
Sbjct: 296 ETER---RAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEV 352
Query: 180 TLMKRLIEFENTDSGS 195
T+ R E D G+
Sbjct: 353 TIRNRYKELLEADGGA 368
>gi|374724899|gb|EHR76979.1| transcription initiation factor TFIIB [uncultured marine group II
euryarchaeote]
Length = 337
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y F GR V A+C YL RQ++ P + D S ++ EL + Q
Sbjct: 170 AARLYRRLSGEGFVTGRSIAGVTAACAYLVARQENLPRQIPDMSRSFDVTEKELSRLIRQ 229
Query: 87 LCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPGGNKKVCDTARDILASMKRDWITTGRK 145
+ + L N+ K P + KF +D LP + + + W G+K
Sbjct: 230 VSRRL------NLHKISSPDQYFDKFISDLQLPPNTHIQVGHLWNAIQPHEDIW--QGKK 281
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL--MKRLIE 187
P G+ A +Y ++ G ++S++ + ++ E TL + RLI+
Sbjct: 282 PMGVAAALIYKASSESGSPRTQSEVCGVANVSEVTLRGLLRLID 325
>gi|448363001|ref|ZP_21551605.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445647623|gb|ELZ00597.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 317
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+K V A DI+ + +G+ P+G
Sbjct: 239 VSKAVETKAVDIIEQTTEQGLHSGKSPTGF 268
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 LKYALSEIDRMVSALGVPRP--VKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKE 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 187 DIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 240
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
K+V A +I+ + + +G+ P+G
Sbjct: 241 --KEVETKAVEIIDTTTEQGLHSGKSPTGF 268
>gi|448474119|ref|ZP_21602087.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445818399|gb|EMA68258.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 380
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y A+ + +GR E V + LY ACRQ+ P L + ++ + E+G Y + Q
Sbjct: 222 IYRRALNEDLIRGRSIEGVSTAALYAACRQEGIPRSLDEVADVSRVPQKEIGRTYRYISQ 281
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGL 149
L + LK VDP F+ +F L +++V A +I+ + +G+ P+G
Sbjct: 282 ELGLE-----LKPVDPKQFVPRFASALQL--SEEVQSKATEIIDVSAEQGLLSGKSPTGF 334
Query: 150 CGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187
AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 335 AAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 372
>gi|389746675|gb|EIM87854.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 353
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 22/222 (9%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++ACRQ P
Sbjct: 133 AFRDISSWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQAHVP 190
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA------DESNVLKQVD--PSIFLHKFTDR 115
+ N +++ LG Y L Q ++ + +N + + P L ++ +
Sbjct: 191 RTFREICNLTHVSKKVLGQCYKALEQAFNLSPGAQNHNSTNGTQVISTGPEDLLIRYCNH 250
Query: 116 L-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIV 174
L LP +C +DI+ + I GR P + G A++ + G S +I +
Sbjct: 251 LDLPPYFHGIC---KDIVVEARNRGIADGRSPISIAGGAIFFTCFLLGKPKSLREICTVA 307
Query: 175 HICEATLMKRLIEFENTDSGSLTIEDFMARKKELHEGVAANL 216
+ E T +K + + D +D + ++K + EG ANL
Sbjct: 308 GVSEGT-VKLVYKLYCAD------KDKLVKQKWIDEG-KANL 341
>gi|302349045|ref|YP_003816683.1| transcription initiation factor IIB [Acidilobus saccharovorans
345-15]
gi|302329457|gb|ADL19652.1| Transcription initiation factor IIB [Acidilobus saccharovorans
345-15]
Length = 318
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 3/168 (1%)
Query: 21 DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 80
D + A + Y A + T+GR E V A+ LY ACR+ P + D + L +
Sbjct: 144 DRVKEEASKLYRDATEKGLTRGRSIESVVAATLYAACRKLKIPCTIDDIAKNLPSKSADT 203
Query: 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI 140
+ C L + D + ++P +F+ + L G + A IL + +
Sbjct: 204 KREVAR-CYRLLVRDLGVDIPVIEPELFISRIVSAL--GLPDYITIEAAKILREARNKGV 260
Query: 141 TTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
T G+ PSGL AA+Y++AL +GL+ ++ +I + + E T+ R E
Sbjct: 261 TAGKDPSGLAAAAVYLAALKNGLRRTQKEIAHVAGVTEVTVRNRYKEL 308
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + Y A+ + GR E V S LY A R
Sbjct: 157 LKQALGEIDRMASALGLPEN--VRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMA 214
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + +K DP ++ +F L G
Sbjct: 215 DTPRSLDEITSVSRVEKDEIARTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GI 267
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L + K + +G+ P GL AA+Y ++L K +++++ + +I E T
Sbjct: 268 SDESERRARQLLKNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSDVANISEVT 327
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 328 IRNRYHEL 335
>gi|433593095|ref|YP_007282581.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433308133|gb|AGB33943.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 9/181 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ ++R++ +AL + E+ I A + + A + +GR E + A+ +Y ACR
Sbjct: 142 LAHGLSEVRRISSALELSET--IRDQACQLFRSAQNEDLLQGRSIEAMAAASVYGACRCN 199
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+P L D + + + Y L L + + V PS F+ + L
Sbjct: 200 GRPRTLDDITESARVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DV 252
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ ++ AR + + + TTG +PSG A LY + G ++SD+ + ++ T
Sbjct: 253 SDQIRQRARQLAEASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVT 312
Query: 181 L 181
+
Sbjct: 313 V 313
>gi|448352225|ref|ZP_21541016.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|448365467|ref|ZP_21553847.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445631605|gb|ELY84834.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445655006|gb|ELZ07853.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 317
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+K V A DI+ + +G+ P+G
Sbjct: 239 VSKAVETKAVDIIEQTTEQGLHSGKSPTGF 268
>gi|448305704|ref|ZP_21495633.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445588162|gb|ELY42408.1| transcription initiation factor IIB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 325
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ++ + A Y A+ + GR E V S LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPKN--VRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L
Sbjct: 196 GTPRSLDEIAAVSRVEKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASDL--DL 248
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L+S K I +G+ P GL AA+Y +AL K +++D+ + I E T
Sbjct: 249 SDETERRARSLLSSAKEQGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVT 308
Query: 181 LMKRLIEFENTDSGSL 196
+ R E + G L
Sbjct: 309 IRNRYHELLEAEDGGL 324
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY + R
Sbjct: 144 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMA 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + +K DP ++ +F L G
Sbjct: 202 GTPRSLDELEKVSRVDKMELTRTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GL 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L K I +G+ P GL AA+Y +AL K ++S++ + I E T
Sbjct: 255 SDEAERQARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVT 314
Query: 181 LMKRLIEFENTDSGSL 196
+ R E G+L
Sbjct: 315 IRNRYKELLEVQDGTL 330
>gi|433638603|ref|YP_007284363.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|448373609|ref|ZP_21557695.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
gi|433290407|gb|AGB16230.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Halovivax ruber XH-70]
gi|445661561|gb|ELZ14344.1| Transcription factor TFIIB cyclin-related protein [Halovivax
asiaticus JCM 14624]
Length = 317
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ R+ +GR E V S LY++CR+
Sbjct: 129 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALDRDLIRGRSIEGVATSALYMSCRKD 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+ +V TA DI+ + +G+ P+G
Sbjct: 239 VSSEVETTAIDIIDETTELGLHSGKSPTGF 268
>gi|407462999|ref|YP_006774316.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046621|gb|AFS81374.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 289
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 83/184 (45%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ ++K+ I S ++ A Y A+ + +GR + A+ +Y ACR
Sbjct: 101 LRQALGELTRIKD--KIALSTNVLEKAAYLYRKALEKKLVRGRSISAMIAASIYAACRDT 158
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D ++ N+ ++ Y L L + + V+ + + + +L
Sbjct: 159 ETPRTLKDVADAANVKRKDIARCYRLLHHELELK-----MPVVNSIQCISRISSKL--EL 211
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
++K+ A +L + + + G+ P GL ALY++ L HG ++ D+ + + E T
Sbjct: 212 SEKIKRHAIKVLQEAQNNKESAGKDPMGLAATALYIACLKHGGSITQRDLAEAAGVTEVT 271
Query: 181 LMKR 184
+ R
Sbjct: 272 IRNR 275
>gi|254166565|ref|ZP_04873419.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254167488|ref|ZP_04874340.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596282|ref|YP_003482978.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
gi|197623751|gb|EDY36314.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624175|gb|EDY36736.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289534069|gb|ADD08416.1| Zinc finger TFIIB-type domain protein [Aciduliprofundum boonei
T469]
Length = 313
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G ++ A Y AV +N +GR E + A+ +Y ACR+ P L + + +N
Sbjct: 139 MGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAKASELN 198
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
++G Y L + L + LK + ++ +F +L +K V + A +I+
Sbjct: 199 KKKIGRAYRHLTKELNLN-----LKPTTATSYITQFCSKLHL--DKNVVNKAEEIVQQAT 251
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSL 196
IT+G+ P+G+ AA+Y++A ++ +I ++ + E T+ R E S +L
Sbjct: 252 ERGITSGKGPTGVAAAAIYIAANMMNEPRTQKEIAEVAGVTEVTIRNRYKEI----SSAL 307
Query: 197 TIE 199
+E
Sbjct: 308 NVE 310
>gi|448730615|ref|ZP_21712921.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
gi|445793284|gb|EMA43867.1| transcription initiation factor IIB [Halococcus saccharolyticus DSM
5350]
Length = 283
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 11/179 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++R+ AL G SD + A + A + +GR E A+ +Y CR
Sbjct: 106 AFTEIRRQVCAL--GLSDSVRDRACVLFESAQDADLLRGRSLEGFAAATIYAVCRTDGVS 163
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L + + EL A Y L + L + +DP+ +L +F +L LP G
Sbjct: 164 RTLAEIVTVAKASRDELTAAYDALNRDLGLPT-----GPIDPTEYLARFASQLGLPHG-- 216
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
V AR+++A + + +GR PSG+ A LY +A G ++ ++ + TL
Sbjct: 217 -VEARARELVAEGRDRGLVSGRNPSGVAAACLYTAATETGHGLTQQAAAEVADVTPVTL 274
>gi|448321090|ref|ZP_21510571.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
gi|445604490|gb|ELY58438.1| transcription initiation factor IIB [Natronococcus amylolyticus DSM
10524]
Length = 324
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 11/196 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSALYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + + + E+ Y + + L + ++ DP ++ +F L L
Sbjct: 195 GTPRSLDEIAAVSRVEKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASELELSD 249
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ AR +L + K + + +G+ P GL AA+Y +AL K +++D+ ++ I E
Sbjct: 250 ETER---RARQLLQTAKEEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEV 306
Query: 180 TLMKRLIEFENTDSGS 195
T+ R E + G+
Sbjct: 307 TIRNRYHELLEAEGGA 322
>gi|9909704|emb|CAC04514.1| transcription factor II B-related factor [Homo sapiens]
Length = 222
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR +
Sbjct: 66 LQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTE 123
Query: 61 SKPFLLIDFSNYLNIN 76
P +L+D S+ L ++
Sbjct: 124 GTPHMLLDLSDLLQVD 139
>gi|448624206|ref|ZP_21670279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445750173|gb|EMA01612.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 309
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 13/190 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ A ++ +M +AL++ S ++ A + Y A + +GR E + A LY CR++
Sbjct: 127 LATALGEIIRMGSALDLSWS--LIEEASQLYRHAQDADLIRGRSVEMIAAGSLYATCRRR 184
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP-- 118
P + ++ + ++ Y L E + QV + + RL
Sbjct: 185 GLPRPRAEIASVARCSCDQVQTGYRAL------NSELGIDAQV---VTARTYVTRLGSDS 235
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
G + +V A ++ + D IT GR P+G+ A LY++ H + +++++ + +
Sbjct: 236 GLSTRVQSRAYELATTADEDGITNGRNPAGVAAACLYLAGTEHDVAPTQTELAALADVSV 295
Query: 179 ATLMKRLIEF 188
TL R +E
Sbjct: 296 PTLRARYVEL 305
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 141 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 198
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S ++ EL Y + + L + +K DP ++ +F L L
Sbjct: 199 GTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 253
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E
Sbjct: 254 ETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEV 310
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 311 TIRNRYKEL 319
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + D + A Y A++ N GR E V + LY A RQ
Sbjct: 167 LKQALGEIDRMASALGL--PDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQV 224
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L +F+ + EL Y + + L + ++ DP+ ++ +F RL L
Sbjct: 225 GNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLR-----VQPADPTSYVPRFVSRLDLSD 279
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ AR++LA IT+G+ P GL AA+Y +AL K ++S + + + E
Sbjct: 280 ETER---RARELLADAASAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVADVSEV 336
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 337 TIRNRYKEL 345
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A R
Sbjct: 143 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMA 200
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + +K DP ++ +F L
Sbjct: 201 DTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--DL 253
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L K I +G+ P GL AA+Y +AL K ++S++ K+ I E T
Sbjct: 254 SDEAERQARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSKVADISEVT 313
Query: 181 LMKRLIEFENTDSGSL 196
+ R E GSL
Sbjct: 314 IRNRYKELLEVQDGSL 329
>gi|448306378|ref|ZP_21496284.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
gi|445598233|gb|ELY52297.1| transcription initiation factor TFB [Natronorubrum bangense JCM
10635]
Length = 332
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 18/201 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL I D + A Y A+ N GR E + + L A RQ
Sbjct: 140 LKHALGEIDRMGSALGI--PDATLETASVIYRRALEENLLPGRSIEGMATAALNAAVRQT 197
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + + + I+ E Y L + L + + DP +L ++ L
Sbjct: 198 GVPRSIDELATVSRIDYLEAARAYRYLVRELELP-----MAPPDPLEYLPRYASAL---- 248
Query: 121 NKKVCDTAR---DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+ +T R D+L + +G+ P GL AA+Y + G ++ D+ + +
Sbjct: 249 -EITAETERRAHDLLEGGMEAGLHSGKHPVGLAAAAIYAGSRLTGETLTQDDVSDAIDVS 307
Query: 178 EATLMKR---LIEFENTDSGS 195
+ T+ R L+E E T S S
Sbjct: 308 KVTIRNRYQELLEHEITTSDS 328
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 141 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 198
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S ++ EL Y + + L + +K DP ++ +F L L
Sbjct: 199 GTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 253
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E
Sbjct: 254 ETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEV 310
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 311 TIRNRYKEL 319
>gi|47216763|emb|CAG03767.1| unnamed protein product [Tetraodon nigroviridis]
Length = 138
Score = 54.7 bits (130), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 28 KRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 87
+R G++ R FT G Q A L RQ+ + + + Y QL
Sbjct: 4 QRRMGVSANRGFTAGSPGPQAAAMLQPLHSRQRRPAPHTYHYMAWSGGR--DQPGSYFQL 61
Query: 88 CQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKP 146
+ ++S+ K +DP +++ +F L G N +V TA ++ MKRDW+ TGR+P
Sbjct: 62 -STRPLFNQSH-FKDLDPCLYIPRFAQMLEFGEKNHEVSMTAMRLVQRMKRDWMHTGRRP 119
Query: 147 SGLCGAALYVSALT 160
SGLCGA + L+
Sbjct: 120 SGLCGAGKSLYTLS 133
>gi|338753414|ref|NP_001229719.1| transcription factor IIIB 90 kDa subunit isoform 8 [Homo sapiens]
gi|16876927|gb|AAH16743.1| BRF1 protein [Homo sapiens]
gi|119602314|gb|EAW81908.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_c
[Homo sapiens]
gi|410332911|gb|JAA35402.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
Length = 208
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNIN 76
D S+ L ++
Sbjct: 151 DLSDLLQVD 159
>gi|448321877|ref|ZP_21511352.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445602929|gb|ELY56900.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 317
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 14/189 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + +S V Y A+ + +GR E V + LY CRQ+
Sbjct: 133 LQFALSEIDRMASALGVPQSTR--EVTSVLYRRALEEDLIRGRSIEGVATAALYAGCRQE 190
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 118
P L + + I E+ Y YI+ E + ++ +DP ++ +F L LP
Sbjct: 191 GLPRSLEEVTEVSRIERIEVSRTYR------YISSELGLEIRPIDPKQYVPRFCSALDLP 244
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
++V A++I+ D + +GR PSG AA+Y ++L K ++ ++ + + E
Sbjct: 245 ---QEVEAKAKEIIDETA-DPLLSGRGPSGFAAAAIYAASLLCNEKKTQREVADVAQVTE 300
Query: 179 ATLMKRLIE 187
T+ R E
Sbjct: 301 VTIRNRYQE 309
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY + R
Sbjct: 144 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMA 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + +K DP ++ +F L G
Sbjct: 202 GTPRSLDELEKVSRVDKMELTRTYRYVVRELKLE-----IKPADPEQYVPRFASEL--GL 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L K I +G+ P GL AA+Y +AL K ++S++ + I E T
Sbjct: 255 SDEAERQARKLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVT 314
Query: 181 LMKRLIEFENTDSGSL 196
+ R E G+L
Sbjct: 315 IRNRYKELLEVQDGTL 330
>gi|426378233|ref|XP_004055847.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Gorilla
gorilla gorilla]
Length = 208
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ + + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR +
Sbjct: 86 LQNGRRHIHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTE 143
Query: 61 SKPFLLIDFSNYLNIN 76
P +L+D S+ L ++
Sbjct: 144 GTPHMLLDLSDLLQVD 159
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 141 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 198
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S ++ EL Y + + L + +K DP ++ +F L L
Sbjct: 199 GTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 253
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E
Sbjct: 254 ETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEV 310
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 311 TIRNRYKEL 319
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 141 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 198
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S ++ EL Y + + L + +K DP ++ +F L L
Sbjct: 199 GTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 253
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E
Sbjct: 254 ETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEV 310
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 311 TIRNRYKEL 319
>gi|126466031|ref|YP_001041140.1| transcription initiation factor IIB [Staphylothermus marinus F1]
gi|126014854|gb|ABN70232.1| Transcription initiation factor IIB (TFIIB) [Staphylothermus
marinus F1]
Length = 309
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ + LN+ + + A R Y AV + +GR E V A+ +Y ACR+
Sbjct: 120 LAQAMNELDRLSDQLNLPRN--VKEEAARIYRRAVEKGLVRGRSIESVIAAAIYAACREL 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + + ++ Y L + L I +++ DP F+ + L G
Sbjct: 178 KIPRTLDEIAKHTKSSRKDIARCYRLLLKELDIKVQTS-----DPIDFIPRIAHALNLSG 232
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V A +IL + +T G P+GL AA+Y++A G + ++ +I + + E T
Sbjct: 233 S--VMKKAAEILHRARSLGVTAGNDPAGLAAAAVYIAAQLSGERRTQKEIAHVAGVTEVT 290
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 291 VRNRYKEL 298
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY A RQ
Sbjct: 141 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 198
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S ++ EL Y + + L + +K DP ++ +F L L
Sbjct: 199 GTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 253
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E
Sbjct: 254 ETERM---ARELLDSARKEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEV 310
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 311 TIRNRYKEL 319
>gi|448303866|ref|ZP_21493812.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592493|gb|ELY46680.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 296
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
F ++R++ L++ D A + A + +GR E A+ +Y CR +S P
Sbjct: 116 GFTEIRRINTGLSL--PDSAREQACTLFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNP 173
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
+ + + + +EL A Y L + L + +DP+ +L ++ +L G
Sbjct: 174 RTIDEITTVARADRHELTAAYDALNRELGLP-----TGPIDPTGYLPRYASKL--GLETA 226
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 158
+ AR+ L + ++ + +GR PSG+ A LY +A
Sbjct: 227 IERRAREHLTVLLQEGLISGRNPSGVAAACLYEAA 261
>gi|448726818|ref|ZP_21709208.1| transcription initiation factor TFB 7 [Halococcus morrhuae DSM
1307]
gi|445793379|gb|EMA43957.1| transcription initiation factor TFB 7 [Halococcus morrhuae DSM
1307]
Length = 202
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 11/178 (6%)
Query: 5 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 64
F ++R+M AL G D I A + A + +GR E A+ +Y CR +
Sbjct: 26 FTEVRRMVGAL--GLPDSIRDRACVLFESAQNEDLLRGRSLEGFAAAAVYAVCRTDALSR 83
Query: 65 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKK 123
L + EL A Y L + L + +DP +L +F ++L LP G ++
Sbjct: 84 TLAEIGAVAKATRDELTAAYDALNRELGLPT-----GPIDPEEYLARFANQLELPNGIER 138
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
AR ++ +T GR PSG+ A LY +A H ++ + + TL
Sbjct: 139 ---RARALVEKSHELGLTNGRNPSGVAAACLYTAATEHDHALTQQSAADVAGVTSVTL 193
>gi|448704008|ref|ZP_21700548.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445796624|gb|EMA47125.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 344
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + S+ A Y AV GR E + + LY A RQ+
Sbjct: 152 LKQALGELERMASALGL--SEPCRETAAVIYRRAVEEELLPGRSIEAMTTASLYAAARQQ 209
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P F + ++ Y L L + + +P +L +F L
Sbjct: 210 GTPRTFSAFESVSRVDDESTKRAYRYLSSELELE-----IAPPEPEQYLRQFASDLAVSD 264
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ ARD+L + K + + G+ P+GL AA+Y + + ++ I + + + T
Sbjct: 265 ETERL--ARDVLEAAKAEELHIGKSPAGLTAAAIYAAGRLTNDRVTQETIDETTGVSKFT 322
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 323 VRNRYREL 330
>gi|448399559|ref|ZP_21570819.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445668576|gb|ELZ21203.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 319
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 131 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 189 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 242
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
K V A +I+ + +G+ P+G
Sbjct: 243 --KDVETKAIEIIDQTTDQGLHSGKSPTGF 270
>gi|449549470|gb|EMD40435.1| hypothetical protein CERSUDRAFT_111033 [Ceriporiopsis subvermispora
B]
Length = 351
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +AF D+ + ++ ++ I +AK+ Y + +G+ + V A+C+++ACRQ
Sbjct: 131 LLQAFRDISNWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLDAVIAACIFIACRQA 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIAD-------ESNVLKQVDPSIFLHKFT 113
P + N +++ LG Y L Q + S P L ++
Sbjct: 189 HVPRTFREICNLTHVSKKVLGQCYKALEQAFNLTPGASQDRHSSTPSGTTGPEDLLIRYC 248
Query: 114 DRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 172
+ L LP + +C D++ + I GR P + G A+Y + G DI
Sbjct: 249 NHLDLPPNVQPIC---ADVIKKARELGIADGRSPVSIAGGAIYFTCHLLGKVKPARDISS 305
Query: 173 IVHICEATL 181
+ + E T+
Sbjct: 306 VAGVSEGTI 314
>gi|448393759|ref|ZP_21567818.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
gi|445663362|gb|ELZ16114.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
salina JCM 13891]
Length = 318
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 LKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 187 DIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 240
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
K V A +I+ + +G+ P+G
Sbjct: 241 --KDVETKAVEIIDQTTEQGLHSGKSPTGF 268
>gi|448616659|ref|ZP_21665369.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751314|gb|EMA02751.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 288
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 9/187 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++R++ AL G + I A + A + +GR E A+C+Y ACR
Sbjct: 111 AFTEIRRVTGAL--GLPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGIS 168
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
+ + + E A Y L + L + + DP+ +L +F +L ++
Sbjct: 169 RSVEEVCDVSKSTESEHQAAYRALNRDLGLP-----VAPADPTEYLPRFATKL--DLDRD 221
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
AR+ +A + D + G+ P G+ A LY +A G ++SD + + TL K
Sbjct: 222 TERRAREYVAEARDDGLVAGKNPCGVAAACLYTAARDLGEDCTQSDAADVADVTPVTLRK 281
Query: 184 RLIEFEN 190
+ +
Sbjct: 282 TYVALRD 288
>gi|126459199|ref|YP_001055477.1| transcription initiation factor IIB [Pyrobaculum calidifontis JCM
11548]
gi|126248920|gb|ABO08011.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
calidifontis JCM 11548]
Length = 331
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++K+++ G V A Y A+ + +GR E + A+ LY+ACR
Sbjct: 144 QAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMLKM 201
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP +++ + ++L G
Sbjct: 202 PRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG- 254
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+ A DIL K+ IT G+ P+GL AA+Y+++L G ++ D + E T+
Sbjct: 255 -EAIKLAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMLGDNKTQKDFAVAAGVTEVTV 313
Query: 182 MKRLIEF 188
R E
Sbjct: 314 RNRYKEL 320
>gi|448736840|ref|ZP_21718923.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
gi|445805608|gb|EMA55811.1| transcription factor TFIIB cyclin-related protein [Halococcus
thailandensis JCM 13552]
Length = 210
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + ES + A Y A+ N GR E V ++ LY A RQ
Sbjct: 21 LKHALGEISRMASALGVPES--VRETAGVIYRRALEENLLPGRSVEGVASAALYAATRQA 78
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
S P L + N + + Y Y++ E N+ + DP+ ++ +F +L G
Sbjct: 79 SIPRSLDEIGNVSRVETVAIMRTY------RYVSRELNLTIPPSDPTDYVPRFASKL--G 130
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++V ARDIL +G+ P GL AALY +L ++ +I + +I +
Sbjct: 131 APEEVERAARDILEEAIDAGYPSGKSPVGLAAAALYAGSLITNNNLTQKEIGEAANISKV 190
Query: 180 TLMKR 184
T+ R
Sbjct: 191 TIRNR 195
>gi|448329811|ref|ZP_21519107.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613430|gb|ELY67131.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 319
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 131 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 189 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 240
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+K V A DI+ + +G+ P+G
Sbjct: 241 VDKDVETKAIDIIDRTTEQGLHSGKSPTGF 270
>gi|383625409|ref|ZP_09949815.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|448700388|ref|ZP_21699496.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
gi|445779928|gb|EMA30843.1| transcription factor TFIIB cyclin-like protein [Halobiforma
lacisalsi AJ5]
Length = 321
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL G + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 133 LKYALSEIDRMVSAL--GVPTPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 190
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 191 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 244
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
K V A +I+ + +G+ P+G
Sbjct: 245 --KDVETKAVEIIEQTTEQGLHSGKSPTGF 272
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A R
Sbjct: 143 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMA 200
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + EL Y + + L + +K DP ++ +F L G
Sbjct: 201 DTPRSLDELEKVSRVEKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GL 253
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR++L K + +G+ P GL AA+Y +AL K ++S++ ++ I E T
Sbjct: 254 SDEAERQARELLRGAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVADISEVT 313
Query: 181 LMKRLIE-FENTDSGSL 196
+ R E E DS L
Sbjct: 314 IRNRYKELLEVQDSNML 330
>gi|448312070|ref|ZP_21501821.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603031|gb|ELY57000.1| Transcription factor TFIIB cyclin-related protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M ++L I S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 140 ALSEIDRMASSLAIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 197
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + + E+G Y + Q L + + VDP ++ +F L +++
Sbjct: 198 RSLEEVATVSRVERKEIGRTYRYVAQELGLE-----MAPVDPKKYVPRFCSDLEL--SEE 250
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 251 VTAKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 310
Query: 184 RLIE 187
R E
Sbjct: 311 RYQE 314
>gi|448337251|ref|ZP_21526332.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
gi|445626359|gb|ELY79707.1| transcription initiation factor TFB [Natrinema pallidum DSM 3751]
Length = 308
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 9/181 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ ++R++ + L + E+ I A + + A + +GR E + A+ +Y ACR
Sbjct: 125 LAHGLSEVRRVSSVLELSET--IRDQACQLFRSAQNEDLLQGRSVEAMAAASVYGACRCN 182
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+P L D + + + Y L L + + V PS F+ + L
Sbjct: 183 GRPRTLDDITESARVEQSRVTNAYTTLNTELGLP-----AQPVTPSAFVPRLASEL--DV 235
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ ++ AR + + + TTG +PSG A LY + G ++SD+ + ++ T
Sbjct: 236 SDQIRQRARQLAEASESTGATTGVRPSGFAAACLYKAGREDGRWLTQSDVADVANVSVVT 295
Query: 181 L 181
+
Sbjct: 296 V 296
>gi|389845720|ref|YP_006347959.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243026|gb|AFK17972.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 289
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 9/187 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++R++ AL G + I A + A + +GR E A+C+Y ACR
Sbjct: 112 AFTEIRRVTGAL--GLPNHIRDQACSLFESAQNEDLLRGRSLEGFAAACVYAACRVAGIS 169
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
+ + + E A Y L + L + + DP+ +L +F +L ++
Sbjct: 170 RSVEEVCDVSKSTESEHQAAYRALNRDLGLP-----VAPADPTEYLPRFATKL--DLDRD 222
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
AR+ +A + D + G+ P G+ A LY +A G ++SD + + TL K
Sbjct: 223 TERRAREYVAEARDDGLVAGKNPCGVAAACLYTAARDLGEDCTQSDAADVADVTPVTLRK 282
Query: 184 RLIEFEN 190
+ +
Sbjct: 283 TYVALRD 289
>gi|448627270|ref|ZP_21671883.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445759099|gb|EMA10386.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 322
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ++ + A Y A+ + GR E V S LY A R
Sbjct: 136 LKQALGEIDRMASALGLPQN--VRETASVIYRRALGDDLLPGRSIEGVATSALYAAARMA 193
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + EL Y + + L + ++ DP +L +F L
Sbjct: 194 GNPRSLDEMARVSRVEKMELTRTYRYIVRELSLE-----VQPADPEHYLPRFISDLEL-- 246
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ ARD++ ++ + +G+ P G+ AA+Y +AL K ++S + + I E T
Sbjct: 247 SEETQRQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQVSDVADISEVT 306
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 307 IRNRYKEL 314
>gi|448396803|ref|ZP_21569251.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445673332|gb|ELZ25893.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 321
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M ++L I S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASSLGIPRS--VREVACVMYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + ++ V+P ++ +F L +++
Sbjct: 196 RSLEEVSGVSRVERKEIGRTYRYVAQELGLE-----MEPVNPKKYVPRFCSELEL--SEE 248
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 249 VQAKANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIRN 308
Query: 184 RLIE 187
R E
Sbjct: 309 RYQE 312
>gi|448447532|ref|ZP_21591095.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
gi|445815444|gb|EMA65368.1| transcription initiation factor TFB [Halorubrum litoreum JCM 13561]
Length = 308
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ ++R++ +AL + SD + A + + A + +GR E + A+ +Y ACR
Sbjct: 125 LAHGLGEVRRLASALEL--SDSVRDQACQLFRSAQNEDLLRGRSIEAIAAASIYGACRCN 182
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPG 119
+ L+ D S + + Y L + L + E V PS+F+ + +D P
Sbjct: 183 GRSRLVDDVSEMARVAESRVTNAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECP- 236
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ AR + + +TTG P+G A LY + G ++S+ + + +A
Sbjct: 237 --DEIRQRARALAEQAEERGVTTGVHPAGFAAACLYKAGHEEGRWLTQSEAADVANASKA 294
Query: 180 TL 181
T+
Sbjct: 295 TV 296
>gi|340345797|ref|ZP_08668929.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520938|gb|EGP94661.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 306
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ KAF + MK L I D +V A Y + T+GR + ++ LY ACR+
Sbjct: 120 LSKAFTILNGMKTKLGI--PDSVVENAAYIYRKISSAKLTRGRTMASLVSASLYAACREN 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ P L D + N L + + L + L Q D S F+ K ++ +
Sbjct: 178 NIPRTLDDIAIAGNTERRILSRDLRTIIKKLGLN-----LNQYDTSSFISKISNNM--NL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+K A DIL + IT G+ P A+LY+S + + K S+ + + + T
Sbjct: 231 KEKTKRDAFDILKRCEIKEITAGKHPVAQAAASLYISCIINNEKISQKKFAEASGVSDVT 290
Query: 181 LMKRLIEFENT 191
+ R++ + T
Sbjct: 291 IRNRVVLIKKT 301
>gi|448324011|ref|ZP_21513453.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
gi|445619909|gb|ELY73423.1| transcription initiation factor IIB [Natronobacterium gregoryi SP2]
Length = 323
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL G + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 135 LKYALSEIDRMVSAL--GVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKE 192
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 193 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL--D 244
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+K V A DI+ + +G+ P+G
Sbjct: 245 VDKDVETKAIDIIDETTEKGLHSGKSPTGF 274
>gi|448318045|ref|ZP_21507583.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
gi|445600803|gb|ELY54805.1| Transcription factor TFIIB cyclin-related protein [Natronococcus
jeotgali DSM 18795]
Length = 319
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 131 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKE 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 189 GIPRSLEEVTGVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 240
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+K V A +I+ + +G+ P+G AA+Y + L +CE
Sbjct: 241 VDKNVESKAIEIIDETTTQGLHSGKSPTGFAAAAIYAAGL----------------LCEE 284
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGV 212
T+ +R + D+ T+ R +E E +
Sbjct: 285 TIPQRAV----ADTAQTTVVTVRNRYREQLEAI 313
>gi|448417415|ref|ZP_21579351.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445677903|gb|ELZ30399.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 296
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 9/189 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++R++ +AL++ E I A + A + +GR E A+C+Y ACR +
Sbjct: 116 AFTEIRRLASALSLPE--RIRDHACSLFRSAQKEDLLRGRSLEGFAAACVYAACRAANVS 173
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
+ + E A Y L + L + + VDP+ ++ +F RL +++
Sbjct: 174 RTVGEVVAEAKATRAEQTAAYDALNRELGLP-----VGPVDPAEYVPRFATRL--DLSRE 226
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
AR+ +A I+TGR P G+ LY +A ++++ + + TL K
Sbjct: 227 AERRAREYVAQAVDAGISTGRNPGGVAAGCLYTAARDLNADVTQAEAAAVADVTPVTLRK 286
Query: 184 RLIEFENTD 192
+ D
Sbjct: 287 TYVALRERD 295
>gi|340344614|ref|ZP_08667746.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519755|gb|EGP93478.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 297
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 9/186 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AFD ++++++ IG SD + +A Y AV + T+GR V A+ +Y ACR
Sbjct: 113 AFDVLQRIQD--KIGVSDHVKELAAYIYRKAVEQKITQGRSINAVVAASMYAACRNTYTL 170
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L D S +I ++ Y + + L + + V+ QV L K ++ L G ++K
Sbjct: 171 RTLRDISEVTDIKPKKIAQSYRAIVKQLDL--KIPVVNQVSC---LSKISNNL--GVSEK 223
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
A +IL I GR P G+ A LY + L F+++ + + + T+
Sbjct: 224 TKYLAMEILKKAADLQILAGRDPVGISAAILYYACLIKKEPFTQTQVAEASRVTAVTVRN 283
Query: 184 RLIEFE 189
R E +
Sbjct: 284 RFHEIK 289
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--N 238
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+K V A +I+ + + +G+ P+G
Sbjct: 239 VDKDVETKAVEIIDQTTQQGLHSGKSPTGF 268
>gi|429193443|ref|YP_007179121.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429137661|gb|AFZ74672.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 340
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL G + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 152 LKYALSEIDRMVSAL--GVPNPVKETASVIYRRALQQDLIRGRSIEGVATSALYTACRKE 209
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y YIADE + L+ +P F+ +F L
Sbjct: 210 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELGINLEPTNPRQFVPRFCSEL--D 261
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+K V A DI+ + +G+ P+G
Sbjct: 262 VDKDVETKAIDIIDETTEKGLHSGKSPTGF 291
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A RQ
Sbjct: 138 LKQALGEIDRMASAL--GLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + EL Y + + L + ++ DP+ ++ +F L
Sbjct: 196 GTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASDLEL-- 248
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ AR +L + K + I +G+ P GL AA+Y +AL K ++ + ++ I E T
Sbjct: 249 SEEAERRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVT 308
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 309 IRNRYKEL 316
>gi|167042470|gb|ABZ07195.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 304
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 17/186 (9%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ ++K+ L I SD ++ A Y A+ + +GR + AS LY ACR
Sbjct: 124 QAFSELNRLKDKLAI--SDAVIEKAAYIYRKALDKGLVRGRSISALMASALYAACRDTET 181
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQV----LYIADESNVLKQVDPSIFLHKFTDRLLP 118
P L D NI ++ Y L + L + D + ++ I + + T R
Sbjct: 182 PRNLKDVEQAANIKRKDIARCYRLLIKELDLHLPVTDSVQCVARIASQIGIQEKTKR--- 238
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
A +L +++ I+ G+ P GL AALY++ + +G ++ DI + ++ E
Sbjct: 239 --------HAIKVLKLAQKNEISAGKDPMGLAAAALYLACVKNGEDKTQRDIAEAANVTE 290
Query: 179 ATLMKR 184
T+ R
Sbjct: 291 VTIRNR 296
>gi|336254668|ref|YP_004597775.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338657|gb|AEH37896.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVSTASLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + + E+ Y + + L + ++ DP ++ +F L LP
Sbjct: 196 GTPRSLDEIDAVSRVEKDEIARTYRYVIRELGLE-----VQPADPESYVPRFASDLDLPD 250
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ AR +L + K I +G+ P GL AA+Y AL K +++D+ ++ +I E
Sbjct: 251 ETER---RARQLLKTAKDSGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVANISEV 307
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 308 TIRNRYHEL 316
>gi|448307033|ref|ZP_21496934.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445596580|gb|ELY50665.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 298
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
F ++R++ L++ ES A + A + +GR E A+ +Y CR +S P
Sbjct: 118 GFTEIRRVNALLSLPESAREQACA--LFKSAQSEGLFQGRSLEGFAAAAIYATCRTRSNP 175
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
+ + + + EL Y L + L + +DP+ +L ++ +L G +
Sbjct: 176 RTIDEITAVARASTDELTTAYDALNRELGLP-----TGPIDPTQYLPRYASKL--GLDTA 228
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL--KFSKSDIVKIVHICEATL 181
V AR+ L ++ +D + GR PSG+ A LY +A +++D ++ ++ T+
Sbjct: 229 VERRAREHLTALLQDGVIGGRNPSGVAAACLYKAAGERDAWPTITQADAAEVANVAPVTI 288
>gi|322708771|gb|EFZ00348.1| transcription initiation protein [Metarhizium anisopliae ARSEF 23]
Length = 347
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A+ ++ + A+N+G++ + + AK + + F KG+ E V A C+++ACRQ
Sbjct: 122 LMQAYKEIVSLCEAINMGQN--VSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQN 179
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES---------NVLKQVDPSI---- 107
+ P + N +++ E+G V+ QL + L ++ V + S+
Sbjct: 180 NVPRTFREIFNLTSVSKKEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAED 239
Query: 108 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 167
++ +L +K+ +RD+ GR P + A +Y++ G S
Sbjct: 240 LCSRYVSQLGFKNQQKISKISRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSS 299
Query: 168 SDIVKIVHICEATL 181
I K + + T+
Sbjct: 300 LPIAKQAGVSDGTV 313
>gi|448718282|ref|ZP_21703005.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445784444|gb|EMA35255.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 325
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL G + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 137 LKYALSEIDRMVSAL--GVPNPVKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 195 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 248
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
K + A +I+ + +G+ P+G
Sbjct: 249 --KDIETKAVEIIDRTTEQGLHSGKSPTGF 276
>gi|299738096|ref|XP_001838087.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
gi|298403152|gb|EAU83664.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
Length = 864
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 345 SDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKN 404
D S +D+ E+D ++ +E+E K+ +W E+NREYLE AAK A
Sbjct: 621 GDELSGLDEEELDRFILSEQEVKIKERVWVELNREYLEALAAKGDQTEPA---------- 670
Query: 405 CPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK-RLSSK 463
KSRK ++ ++ TA E+ R ++ K + S +
Sbjct: 671 -------------------TKSRKRRKTNNKPRDASTPAGGTAAESVRNLIKKNPKYSKR 711
Query: 464 INYDVLEKLFDDS 476
INYD L+ LF D
Sbjct: 712 INYDALKDLFVDG 724
>gi|448470297|ref|ZP_21600440.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
gi|445808271|gb|EMA58344.1| transcription factor TFIIB cyclin-related protein [Halorubrum
kocurii JCM 14978]
Length = 237
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 9/194 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A++ N GR E V + LY A RQ
Sbjct: 50 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQA 107
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L +F+ ++ EL Y + + L + ++ DP ++ +F RL
Sbjct: 108 GNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPGSYVPRFVSRL--DL 160
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ ARD+L K+ IT+G+ P GL +A+Y +AL K ++S + + I E T
Sbjct: 161 SEETQRLARDLLDGAKQAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVADISEVT 220
Query: 181 LMKRLIEFENTDSG 194
+ R E N G
Sbjct: 221 IRNRYKELLNASEG 234
>gi|448448382|ref|ZP_21591195.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814798|gb|EMA64756.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 380
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A++ N GR E V + LY A RQ
Sbjct: 193 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQV 250
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L +F+ + EL Y + + L + ++ DP+ ++ +F RL
Sbjct: 251 GNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLR-----VQPADPTSYVPRFVSRL--DL 303
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ AR++L IT+G+ P GL AA+Y +AL K ++S++ + + E T
Sbjct: 304 SEETERRARELLEDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSEVT 363
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 364 IRNRYKEL 371
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A RQ
Sbjct: 138 LKQALGEIDRMASAL--GLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + EL Y + + L + ++ DP+ ++ +F L
Sbjct: 196 GTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASDLEL-- 248
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ AR +L + K + I +G+ P GL AA+Y +AL K ++ + ++ I E T
Sbjct: 249 SEEAERRARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVT 308
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 309 IRNRYKEL 316
>gi|448633189|ref|ZP_21674096.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
gi|445752153|gb|EMA03581.1| transcription initiation factor IIB 5 [Haloarcula vallismortis ATCC
29715]
Length = 306
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 9/189 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ ++R++ + L + ES + A +F+ A + + +GR E + A+ +Y CR
Sbjct: 125 LAHGLGEVRRLASTLELSES--VRDQACQFFRSAQSEDLLRGRSIEAIAAASVYGTCRCN 182
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+P LL D + + + Y L + L + + P+ F+ + L
Sbjct: 183 QRPLLLEDIVDAARVESSRVTNAYRTLNRELKLP-----TPPMRPTSFIPRLISELEL-- 235
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + A ++ A + +T G +P+G+ A +Y++A G ++S + + T
Sbjct: 236 DHDIQRRANELAACAEETALTNGCQPTGVAAACVYLAAQEQGALITQSTVASAAEVSVVT 295
Query: 181 LMKRLIEFE 189
L R E +
Sbjct: 296 LRSRRDELQ 304
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A R
Sbjct: 143 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMA 200
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + +K DP ++ +F L
Sbjct: 201 DTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--DL 253
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L K I +G+ P GL AA+Y +AL K ++S + ++ I E T
Sbjct: 254 SDEAERQARTLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVADISEVT 313
Query: 181 LMKRLIEFENTDSGSL 196
+ R E GSL
Sbjct: 314 IRNRYKELLEVQDGSL 329
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY + RQ
Sbjct: 172 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATSSLYASARQA 229
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S ++ EL Y + + L + +K DP ++ +F L L
Sbjct: 230 GTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VKPADPEHYVPRFVSDLDLSD 284
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E
Sbjct: 285 ETERM---ARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEV 341
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 342 TIRNRYKEL 350
>gi|322699177|gb|EFY90941.1| transcription initiation protein [Metarhizium acridum CQMa 102]
Length = 347
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A+ ++ + A+N+G++ + + AK + + F KG+ E V A C+++ACRQ
Sbjct: 122 LMQAYKEIVSLCEAINMGQN--VSNAAKHIFKLVDKHKFMKGKPQEAVIAGCIFIACRQN 179
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADES---------NVLKQVDPSI---- 107
+ P + N +++ E+G V+ QL + L ++ V + S+
Sbjct: 180 NVPRTFREIFNLTSVSKKEVGRVFKQLQKFLQKLQDTEGEGATGLNTVTNYENTSVGAED 239
Query: 108 FLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 167
++ +L +K+ +RD+ GR P + A +Y++ G S
Sbjct: 240 LCSRYVSQLGFKSQQKISKISRDLAEKANDISALAGRSPLSVAAACIYMACHLVGEPRSS 299
Query: 168 SDIVKIVHICEATL 181
I K + + T+
Sbjct: 300 LPIAKQAGVSDGTV 313
>gi|115702419|ref|XP_796335.2| PREDICTED: transcription initiation factor IIB-like
[Strongylocentrotus purpuratus]
Length = 321
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++ M + +N+ ++ IV A + + +GR + + A+CLY+ACRQ+ P
Sbjct: 122 AFREIGAMADRINLPKT--IVDRAHTLFKQVNDQRTLRGRSNDAIAAACLYIACRQEGVP 179
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
+ +N E+G + + + L E+NV+ + F+ +F L LP
Sbjct: 180 RTFKEICAVSRVNKREIGRCFKLILKAL----ETNVV-LITTGDFMSRFCSNLSLP---P 231
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
KV A I + GR P + AA+Y+++ K S+ +I +I + + T+
Sbjct: 232 KVQRAATHIARKADELDLVAGRSPISVTAAAIYMASQASEEKRSQKEIGEIAGVADVTI 290
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 9/194 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY + R
Sbjct: 144 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMA 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
S P L + ++ EL Y + + L + +K DP ++ +F L G
Sbjct: 202 STPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GL 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L K + +G+ P GL AA+Y +AL K ++S++ + I E T
Sbjct: 255 SDESERQARQLLRDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVT 314
Query: 181 LMKRLIEFENTDSG 194
+ R E G
Sbjct: 315 IRNRYKELLEVQDG 328
>gi|407465321|ref|YP_006776203.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048509|gb|AFS83261.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 309
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G SD +V A FY A+ RN +GR + + A+CLY +CR L + + I
Sbjct: 134 LGLSDTVVERASLFYRKAIERNLIRGRTVKSIAAACLYASCRDLEHHRTLTEIAIQFVIK 193
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
E+ Y L + L + VDP ++K ++ G ++KV A IL + +
Sbjct: 194 RKEIARAYRILFRELGFT-----VSVVDPIKSINKIASKI--GSSEKVIRKATQILTAAQ 246
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190
I G+ P + AA+Y + + G S+ +I + + ++ R+ EF+
Sbjct: 247 DAEIIAGKNPEIMAAAAIYAACVITGELKSQIEIAEAANTSTVSIRNRIQEFKT 300
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 152 LKQALGEIDRMASALGLPEN--VRETASVIYRRALGDDLLPGRSIEGVATASLYAAARQA 209
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + ++ DP ++ +F L G
Sbjct: 210 GTPRSLDELETVSRVDKMELTRTYRYIVRELKLE-----IEPADPEQYVPRFASEL--GI 262
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + A +L K I +G+ P GL AA+Y +AL K ++S + ++ I E T
Sbjct: 263 SDEAERQAHTLLRGAKEVGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVASISEVT 322
Query: 181 LMKRLIEFENTDSGSL 196
+ R E D L
Sbjct: 323 IRNRYKELLEVDDAGL 338
>gi|284176274|ref|YP_003406551.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
gi|284017931|gb|ADB63878.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
turkmenica DSM 5511]
Length = 318
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 LKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 187 DIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 240
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
K V A +I+ + +G+ P+G
Sbjct: 241 --KDVETKAVEIIDRTTDQGLHSGKSPTGF 268
>gi|393216052|gb|EJD01543.1| cyclin-like protein [Fomitiporia mediterranea MF3/22]
Length = 354
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 15/192 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M +AF D+ + ++ ++ I +AK+ Y A +G+ + V A+C+++ACRQ
Sbjct: 132 MLQAFRDISSWCDQFSLPKT--ISDIAKQLYKRADEEKLLRGKSLDAVIAACIFIACRQA 189
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE-SNVLKQ----------VDPSIFL 109
P + ++ LG Y L + +A SN Q +P L
Sbjct: 190 HVPRTFREMCTLTHVPKKTLGQCYKTLEKAFNLAAAGSNNTTQNSRPDPAATTTNPQDLL 249
Query: 110 HKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSD 169
++ + L G V TA +I++ K T GR P + ++Y + G+ + D
Sbjct: 250 ARYCNHL--GLPHLVQSTASEIISIGKEHAFTDGRSPISIASGSIYFTTQLLGVPMTMKD 307
Query: 170 IVKIVHICEATL 181
+ + + E+T+
Sbjct: 308 LCENAGVSESTV 319
>gi|386875662|ref|ZP_10117821.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386806418|gb|EIJ65878.1| transcription factor TFIIB repeat protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+KAF + + + L + ES H A F IA A+ GR T + + +Y+ACR
Sbjct: 115 FQKAFTLLDGISSKLALPES-VTEHTAYLFRKIA-AKKILTGRSTSGILCATIYIACRST 172
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
+ P L D ++ NI +L Y L + L I ES DP +F R+
Sbjct: 173 NIPRTLQDVADAGNIKKRDLQRTYRFLVKELQINPES-----YDP----IEFVTRIATAA 223
Query: 121 N--KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
N +K A IL + I+T + P G+ AA+ ++ + K S+ I K+ I
Sbjct: 224 NISEKTERLAFKILRISAKKNISTSKNPIGMAAAAVNLAVTINHEKISQVKISKVSGISS 283
Query: 179 ATLMKRLIEFENTDSGSL 196
T+ R E + G +
Sbjct: 284 VTIRDRTKEIKERIGGEI 301
>gi|448336354|ref|ZP_21525454.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445629246|gb|ELY82538.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 321
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M ++L I S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASSLAIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + + E+G Y Y+A E N+ ++ V+P ++ +F L
Sbjct: 196 RSLEEVAAVSRVERKEIGRTY------RYVAQELNLEMEPVNPKKYVPRFCSELELSEEV 249
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 250 QV--KANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIR 307
Query: 183 KRLIE 187
R E
Sbjct: 308 NRYQE 312
>gi|448315422|ref|ZP_21505070.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
gi|445611595|gb|ELY65342.1| transcription initiation factor TFB [Natronococcus jeotgali DSM
18795]
Length = 319
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 14/189 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + ++ VA Y A+ + +GR E V + LY CR++
Sbjct: 134 LQFALSEIDRMASALGVPR--DVREVASVIYRRALDEDLIRGRSIEGVATAALYAGCRRE 191
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRL-LP 118
P L + ++ + E+ Y Y+++E + L +DP ++ +F+ +L LP
Sbjct: 192 GIPRSLEEIADVSRVERLEISRTYR------YVSNELGLELLPIDPKQYVPRFSSKLDLP 245
Query: 119 GGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
++V A +I+ D + +GR PSG AA+Y +AL K ++ + ++ + E
Sbjct: 246 ---QEVKVKANEIIDETA-DPLLSGRGPSGFAAAAIYAAALLCNEKRTQKAVAEVAQVTE 301
Query: 179 ATLMKRLIE 187
T+ R E
Sbjct: 302 VTIRNRYQE 310
>gi|402226301|gb|EJU06361.1| TFIIB-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 358
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 20/196 (10%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M + F + Q +++++ + I AK+ Y KG+R + + A+C+++ACRQ
Sbjct: 132 MMEGFKKISQFCDSISLPKV--ISDTAKQLYKRVEEDRILKGKRMDAIVAACIFIACRQG 189
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI---ADESNVLKQVDPSI---------- 107
P + N +N LG Y + + ++ +VD +
Sbjct: 190 HVPRTFREICNITKVNKKALGQCYKAMEAYFRLNVSGGATSSTNRVDIHLAGSGSKASAE 249
Query: 108 -FLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF 165
+ +F + L LP ++ C I+ + + + GR P + G A+Y + G
Sbjct: 250 ELIPRFCNHLGLPVSLERSC---VQIIVNAREQGVNAGRSPISIAGGAIYFTTHLLGQAK 306
Query: 166 SKSDIVKIVHICEATL 181
DI ++V++ E+T+
Sbjct: 307 HARDISRVVNVSESTI 322
>gi|448305351|ref|ZP_21495283.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589198|gb|ELY43434.1| transcription initiation factor TFB [Natronorubrum sulfidifaciens
JCM 14089]
Length = 334
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL I D + A Y A+ N GR E + + L A RQ
Sbjct: 142 LKHALGEIDRMGSALGI--PDATLETASVIYRRALEENLLPGRSIEGMATAALNAAVRQT 199
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + + + I+ E Y L + L + + DP +L ++ L
Sbjct: 200 GVPRSIDELATVSRIDYLEAARAYRYLVRELELP-----MAPPDPLEYLPRYASAL---- 250
Query: 121 NKKVCDTAR---DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+ +T R D+L + +G+ P GL AA+Y + G +++D+ + +
Sbjct: 251 -EITAETERRAHDLLEGGMEAGLHSGKHPVGLAAAAIYAGSRLTGEALTQADVSDAIDVS 309
Query: 178 EATLMKRLIEF 188
+ T+ R E
Sbjct: 310 KVTIRNRYQEL 320
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A RQ
Sbjct: 139 LKQALGEIDRMASAL--GLPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQA 196
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + + + EL Y + + L + ++ DP+ ++ +F L L
Sbjct: 197 GTPRSLDEIATVSRVGKMELTRTYRYVVRELGLE-----IQPADPASYVPRFASDLDLSE 251
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR +L + K + I +G+ P GL AA+Y +AL K ++ + ++ I E
Sbjct: 252 ESER---RARQLLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEV 308
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 309 TIRNRYKEL 317
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 9/194 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY + R
Sbjct: 144 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATAALYASARMA 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
S P L + ++ EL Y + + L + +K DP ++ +F L G
Sbjct: 202 STPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GL 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L K + +G+ P GL AA+Y +AL K ++S++ + I E T
Sbjct: 255 SDESERQARQLLRDAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVT 314
Query: 181 LMKRLIEFENTDSG 194
+ R E G
Sbjct: 315 IRNRYKELLEVQDG 328
>gi|448302684|ref|ZP_21492657.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595257|gb|ELY49368.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 316
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 DIPRSLEEVTAVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+K V A +I+ + + +G+ P+G
Sbjct: 239 VDKDVETKAVEIIDETTQQGLHSGKSPTGF 268
>gi|397772462|ref|YP_006540008.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448342670|ref|ZP_21531616.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397681555|gb|AFO55932.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445625065|gb|ELY78435.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 321
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A + +M ++L I S + VA Y A+ + +GR E V S LY ACR + P
Sbjct: 138 ALSETDRMASSLAIPRS--VREVACVIYRRALDEDLIRGRSIEGVATSTLYAACRMEGIP 195
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + + E+G Y Y+A E N+ ++ V+P ++ +F L
Sbjct: 196 RSLEEVAAVSRVERKEIGRTY------RYVAQELNLEMEPVNPKKYVPRFCSELELSEEV 249
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +I+ + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 250 QV--KANEIIDTTTEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVSDVAQVTEVTIR 307
Query: 183 KRLIE 187
R E
Sbjct: 308 NRYQE 312
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 10/197 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A R
Sbjct: 144 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMA 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + EL Y + + L + +K DP ++ +F L G
Sbjct: 202 DTPRSLDELEKVSRVEKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GL 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR++L K + +G+ P GL AA+Y +AL K ++S++ + I E T
Sbjct: 255 SDEAERQARELLRGAKETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSAVADISEVT 314
Query: 181 LMKRLIE-FENTDSGSL 196
+ R E E DS L
Sbjct: 315 IRNRYKELLEVQDSNML 331
>gi|448419798|ref|ZP_21580642.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674712|gb|ELZ27249.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 352
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V SC+Y A R
Sbjct: 164 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMA 221
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + S + E+ Y YIA E ++ +K DP ++ +F L
Sbjct: 222 GVPRSLDEISEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFGSELGLS 275
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+ AR +L + K + +G+ P GL AA+Y +AL K +++ + ++ I E
Sbjct: 276 DEAKM--RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEV 333
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 334 TIRNRYHEL 342
>gi|405962690|gb|EKC28341.1| Transcription initiation factor IIB [Crassostrea gigas]
Length = 319
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++ QM + LN+ I A + KGR + + ++C+Y+ACRQ+ P
Sbjct: 120 AFREIGQMGDRLNLPRM--IADRANTLFKQVHEGKALKGRSNDAIASACMYIACRQEGVP 177
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
+ I+ E+G V+ + + L E+NV + + F+ +F L LP +
Sbjct: 178 RTFKEICAVSKISKKEIGRVFKLILKNL----ETNV-ELITTGDFMSRFCSNLSLPNSVQ 232
Query: 123 KVCDTARDILASMKRDW-ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
K A +A D +T GR P + AA+Y+++ K S+ +I I + E T+
Sbjct: 233 K----AATHIARKAVDLDLTPGRSPISVAAAAIYMASQASADKKSQKEIGDIAGVAEVTI 288
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V + LY + RQ
Sbjct: 165 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQA 222
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + + + E+ Y + + L + +K DP ++ +F L L
Sbjct: 223 GTPRSLDEIAGVSRVEKDEIARTYRYVIRELGLE-----VKPADPVSYVPRFASDLDLSD 277
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ AR +L + K I +G+ P GL AA+Y AL K +++D+ ++ I E
Sbjct: 278 ETER---RARQLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEV 334
Query: 180 TLMKRLIEFENTDSGS 195
T+ R E +SG+
Sbjct: 335 TIRNRYHELLEAESGA 350
>gi|448359569|ref|ZP_21548219.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445642204|gb|ELY95273.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 317
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 129 LKYALSEIDRMVSALGVPKP--VKETASVIYRRALEQDLIRGRSIEGVATSALYTACRKE 186
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ ++ E+G Y YIADE ++ L+ +P F+ +F L
Sbjct: 187 GIPRSLEEVTSVSRVDQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSEL--D 238
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+K+V A +I+ + +G+ P+G
Sbjct: 239 VSKEVETRAVEIINQTTDKGLHSGKSPTGF 268
>gi|148224786|ref|NP_001088125.1| general transcription factor 2B [Xenopus laevis]
gi|52430498|gb|AAH82943.1| LOC494830 protein [Xenopus laevis]
Length = 316
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 11/188 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + I+ E+G + + + L E+NV + F+ +F L G
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCSNL--GL 224
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K+V A I + GR P + AA+Y+++ K ++ +I I + + T
Sbjct: 225 TKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVT 284
Query: 181 LMK--RLI 186
+ + RLI
Sbjct: 285 IRQSYRLI 292
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + ++ + A Y A+ + GR E V + LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPKN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + I+ EL Y + + L + ++ DP ++ +F L
Sbjct: 196 GTPRSLDEIVQVSRIDRMELTRTYRYVIRELDLE-----VQPADPESYVPRFASDLELSD 250
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ AR++L++ K+ I +G+ P GL AA+Y +AL K +++++ ++ +I E T
Sbjct: 251 EAE--HRARELLSNAKQSGIHSGKSPVGLAAAAVYAAALLTNEKVTQAEVSEVANISEVT 308
Query: 181 LMKRLIEFENTDSGS 195
+ R E D S
Sbjct: 309 IRNRYKELLQADDTS 323
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V S LY A R
Sbjct: 143 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMA 200
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + +N + E+ Y + + L + ++ DP ++ +F L L
Sbjct: 201 GTPRSLDEITNVSRVGKDEISRTYRYVVRELKLE-----IEPADPEQYVPRFASDLDLSD 255
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR +L + K I +G+ P GL AA+Y ++L K ++S + ++ +I E
Sbjct: 256 ESER---HARQLLKTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSQVSEVANISEV 312
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 313 TIRNRYHEL 321
>gi|62858845|ref|NP_001016277.1| general transcription factor 2B [Xenopus (Silurana) tropicalis]
gi|89266709|emb|CAJ83945.1| general transcription factor IIBgeneral transcription factor IIB
[Xenopus (Silurana) tropicalis]
Length = 316
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 11/188 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITNMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + I+ E+G + + + L E+NV + F+ +F L G
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCSNL--GL 224
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K+V A I + GR P + AA+Y+++ K ++ +I I + + T
Sbjct: 225 TKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVT 284
Query: 181 LMK--RLI 186
+ + RLI
Sbjct: 285 IRQSYRLI 292
>gi|448439566|ref|ZP_21588130.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
gi|445691100|gb|ELZ43295.1| Zinc finger TFIIB-type domain protein [Halorubrum saccharovorum DSM
1137]
Length = 333
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 11/195 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A++ N GR E V + LY A RQ
Sbjct: 146 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQA 203
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L +F+ ++ EL Y + + L + ++ DP ++ +F RL L
Sbjct: 204 GNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLE-----IQPADPESYVPRFVSRLDLSE 258
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L K IT+G+ P GL +A+Y +AL K ++S + ++ I E
Sbjct: 259 ETQRL---ARELLDGAKESGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSEVADISEV 315
Query: 180 TLMKRLIEFENTDSG 194
T+ R E + G
Sbjct: 316 TIRNRYKELLDASEG 330
>gi|336253520|ref|YP_004596627.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335337509|gb|AEH36748.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 332
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ AF ++ +M +AL++ E A Y AV GR E + +CLY A RQ
Sbjct: 144 LKHAFGELERMASALDLPEP--CRETAAVLYRRAVDEELLPGRSIEAMATACLYAAARQH 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P F + + + + Y L + L + + DP +L +F L
Sbjct: 202 GTPRTWATFESVSRVEIGRVQRAYRYLSRELGLE-----IAPADPLQYLGQFASAL--SI 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR+IL + K I G+ P+GL +A+Y +A + ++ I + + E T
Sbjct: 255 SDEAEHVAREILETAKEKGIHVGKSPAGLAASAIYAAARLTNERVTQKTIDEQTGVSEFT 314
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 315 IRNRYQEL 322
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 18/202 (8%)
Query: 9 RQMKNALN-IGESDEIVHVAK-------RFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
RQM A+N I E E VH+ + R + + +G+ E A+CLY+ACRQ
Sbjct: 102 RQMTTAMNLIREMSERVHLPRNIQESAFRMFKEVLDSGVLRGKNIEAQAAACLYIACRQD 161
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + ++ E+G C + + + S L+ V + F+ +F L LP
Sbjct: 162 GVPRTFKEICAISRVSKKEIGR-----CFKIIVRNSSTNLEHVTSADFMSRFCGNLYLP- 215
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
N R ++ D + GR P + AA+Y+++ K + +I I E
Sbjct: 216 -NSIQAAATRIAKRAVDMDLV-AGRSPISIAAAAIYMASQASAEKRTAKEIGDIAGAAEV 273
Query: 180 TLMKRLIEFENTDSGSLTIEDF 201
T+ ++ + + L EDF
Sbjct: 274 TI-RQTYKLLYPKAAELFPEDF 294
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 131 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALEQDLIRGRSIEGVATSALYTACRKE 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + ++ + E+G Y YIADE ++ L+ +P F+ +F L G
Sbjct: 189 DIPRSLEEVTSVARVEQREIGRTY------RYIADELDINLEPTNPRQFVPRFCSELDVG 242
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGL 149
+ V A +I+ + +G+ P+G
Sbjct: 243 TD--VETKAIEIIDRTTEQGLHSGKSPTGF 270
>gi|110667127|ref|YP_656938.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|385802543|ref|YP_005838943.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|109624874|emb|CAJ51283.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|339728035|emb|CCC39156.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 366
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V SC+Y A R
Sbjct: 178 LKQALGEVDRMASALGLPEN--VRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMA 235
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + + E+ Y YIA E ++ +K DP ++ +F L G
Sbjct: 236 GVPRSLDEIAEVSRVPKSEVARTYR------YIARELSLEVKPADPEQYVPRFASEL--G 287
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ + AR +L + K + +G+ P GL AA+Y +AL K +++ + ++ I E
Sbjct: 288 LSDESTLRARQLLQNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEV 347
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 348 TIRNRYHEL 356
>gi|345007074|ref|YP_004809926.1| transcription initiation factor IIB [halophilic archaeon DL31]
gi|344322700|gb|AEN07553.1| Transcription initiation factor IIB [halophilic archaeon DL31]
Length = 304
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 11/182 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ ++R++ +AL + E+ I A + + A + +GR E + A+ +Y ACR
Sbjct: 125 LAHGLGEVRRIVSALELSEA--IRDQACQLFRSAQNEDLLRGRSIEAIAAASVYGACRCN 182
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPG 119
LL + S + + Y L + L + E V PS+F+ + +D P
Sbjct: 183 GLSRLLDEVSEMARVEESRVANAYKTLNEELGLPAEP-----VSPSMFVPRLASDLECPD 237
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ AR + + +TTG P+G A LY + G ++SD+ + ++
Sbjct: 238 ETRQ---RARTLAEQAEERGVTTGVHPAGFAAACLYKAGQEQGKWVTQSDVAAVGNVTPT 294
Query: 180 TL 181
T+
Sbjct: 295 TI 296
>gi|13541920|ref|NP_111608.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363019|sp|Q979P7.1|TF2B2_THEVO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|14325351|dbj|BAB60255.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 313
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G +I + Y AV +N +GR E + + +Y ACR+ + P L + + +N
Sbjct: 139 LGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIAKASEVN 198
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
++G Y L + L + L+ P ++ +F ++L +K+ + DI+
Sbjct: 199 KKKIGKAYRHLAKELDLN-----LRPTTPFSYIAQFCNKL--DLDKQAIVISEDIVRQAM 251
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 252 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 303
>gi|452207622|ref|YP_007487744.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083722|emb|CCQ37037.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 321
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ N GR E V + +Y A RQ
Sbjct: 133 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDDNLLPGRSIEGVSTASVYAAARQA 190
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + + DP ++ +F L
Sbjct: 191 GVPRSLDEVAGVSRVEKSEIARTYRYVVRELGLE-----VAPADPESYVPRFASDL--DL 243
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ + AR +L + K + +G+ P GL AA+Y ++L K +++ + ++ I E T
Sbjct: 244 SEEAENRARKLLGNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKTTQAAVSEVADISEVT 303
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 304 IRNRYHEL 311
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 9/184 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ ++K+ L++ SD ++ A Y A+ + +GR + AS LY ACR
Sbjct: 119 LRQALSELNRLKDKLSL--SDAVIEKAAYIYRKAIEKKLVRGRSISAMIASALYAACRDT 176
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L D N+ ++ Y L + L + + VDP L + R+ G
Sbjct: 177 ETPRTLNDVGEAANLKKKDIARCYRLLHRELELK-----MPVVDPIQCLARIASRI--GI 229
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+K A +L + + G+ P GL AALY++ + +G ++ DI + + E T
Sbjct: 230 TEKTKRYAAKVLKISQEHEESAGKDPMGLAAAALYLACVKNGEDITQRDIAEAASVTEVT 289
Query: 181 LMKR 184
+ R
Sbjct: 290 IRNR 293
>gi|448732431|ref|ZP_21714711.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
gi|445804689|gb|EMA54922.1| transcription initiation factor IIB [Halococcus salifodinae DSM
8989]
Length = 283
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 13/163 (7%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
AF ++R+ AL G SD + A + A + +GR E A+ +Y CR
Sbjct: 106 AFTEIRRQVCAL--GLSDSVRDRACVLFESAQDADLLRGRSLEGFAAATIYAVCRTDGVS 163
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNK 122
L + + EL A Y L + L + +DPS +L +F +L LP G
Sbjct: 164 RTLAEIVTVAKASRDELTAAYDALNRDLGLPT-----GPIDPSEYLARFASQLDLPHG-- 216
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA--LTHGL 163
V AR+++A + + +GR PSG+ A LY +A HGL
Sbjct: 217 -VEARARELVAEGRDRGLVSGRNPSGVAAACLYTAATETDHGL 258
>gi|448309529|ref|ZP_21499387.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
gi|445589952|gb|ELY44175.1| transcription initiation factor IIB [Natronorubrum bangense JCM
10635]
Length = 325
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + +S + A Y A+ + GR E V S LY A RQ
Sbjct: 138 LKQALGEIDRMASALGLPKS--VRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQA 195
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L
Sbjct: 196 GTPRSLDEITAVSRVEKDEIARTYRYVIRELGLE-----VQPADPENYVPRFASDL--DL 248
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L++ K I +G+ P GL AA+Y +AL K +++D+ + I E T
Sbjct: 249 SDETERRARSLLSTAKESGIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVT 308
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 309 IRNRYHEL 316
>gi|448564209|ref|ZP_21635910.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445717196|gb|ELZ68917.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 309
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 9/181 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ ++R++ AL + ES A R + A + + +GR E + A+ +Y CR
Sbjct: 126 LAHGLGEVRRIAGALELSESTR--DQACRLFRSAQSEDLLRGRSIEAIAAASVYGICRCN 183
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + ++ + + Y L L + V P F+ + L G
Sbjct: 184 RLMRTLEEIADLARVENQRVVNAYKTLNTELGLP-----TPPVRPRDFIPRLVSEL--GV 236
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ AR I ++ +TTG P+G GA LY H L +SD+ + ++ AT
Sbjct: 237 PEEISRRARSIAMEAEQLGVTTGCNPAGFAGACLYWVGCDHALHLRQSDVAQAANVSAAT 296
Query: 181 L 181
+
Sbjct: 297 I 297
>gi|435848670|ref|YP_007310920.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433674938|gb|AGB39130.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 319
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 31/213 (14%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
++ A ++ +M +AL + + + A Y A+ ++ +GR E V S LY ACR++
Sbjct: 131 LKYALSEIDRMVSALGVPKP--VKETASVIYRQALDQDLIRGRSIEGVATSALYTACRKE 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + + ++ E+G Y Y+ADE ++ L+ +P F+ +F L
Sbjct: 189 GIPRSLEEVTAVSRVDQREIGRTY------RYVADELDINLEPTNPRQFVPRFCSEL--D 240
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+K V A +I+ + +G+ P+G AA+Y + L +CE
Sbjct: 241 VDKDVESKAIEIIDETTNQGLHSGKSPTGFAAAAIYAAGL----------------LCEE 284
Query: 180 TLMKRLIEFENTDSGSLTIEDFMARKKELHEGV 212
T+ +R + D+ T+ R +E E +
Sbjct: 285 TIPQRAV----ADTAQTTVVTVRNRYREQLEAI 313
>gi|399575499|ref|ZP_10769257.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
gi|399239767|gb|EJN60693.1| transcription factor TFIIB cyclin-like protein [Halogranum salarium
B-1]
Length = 319
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 9/194 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G + A Y A+ N GR E V +C+Y A R
Sbjct: 131 LKQALGEIDRMASAL--GLPTNVRETASVIYRRALNDNLLPGRSIEGVSTACVYAAARMA 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ ++ E+ Y + + L + ++ DP ++ +F L G
Sbjct: 189 GVPRSLDEITDVSRVDKSEVARTYRYVVRELKLE-----VRPADPESYVPRFASSL--GL 241
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ AR +L + K + +G+ P GL AA+Y +AL K +++ + ++ I E T
Sbjct: 242 SEETERRARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVT 301
Query: 181 LMKRLIEFENTDSG 194
+ R E + G
Sbjct: 302 IRNRYHELLEAEEG 315
>gi|147901135|ref|NP_001081115.1| transcription initiation factor IIB [Xenopus laevis]
gi|135632|sp|P29054.1|TF2B_XENLA RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|65129|emb|CAA44668.1| TFIIB [Xenopus laevis]
gi|50603693|gb|AAH77495.1| Gtf2b-A protein [Xenopus laevis]
Length = 316
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 11/188 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + I+ + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITNMSDRINLPRN--IIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + I+ E+G + + + L E+NV + F+ +F L G
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCSNL--GL 224
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K+V A I + GR P + AA+Y+++ K ++ +I I + + T
Sbjct: 225 TKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVT 284
Query: 181 LMK--RLI 186
+ + RLI
Sbjct: 285 IRQSYRLI 292
>gi|313127155|ref|YP_004037425.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448288376|ref|ZP_21479575.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293520|gb|ADQ67980.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445569527|gb|ELY24099.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 321
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V SC+Y A R
Sbjct: 133 LKQALGEIDRMASALGLPEN--VRETASVIYRRALDDDLLPGRSIEGVATSCVYAAARMA 190
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPG 119
P L + S + E+ Y YIA E ++ +K DP ++ +F L
Sbjct: 191 GVPRSLDEISEVSRVEKSEVARTYR------YIARELSLEVKPADPEQYVPRFGSELGLS 244
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+ AR +L + K + +G+ P GL AA+Y +AL K +++ + + I E
Sbjct: 245 DESKM--RARQLLKNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEV 302
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 303 TIRNRYHEL 311
>gi|118576996|ref|YP_876739.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195517|gb|ABK78435.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 304
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
Query: 13 NALNI--GESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFS 70
NA+ I G + V A Y AV T+GR + A+ LY ACR+ P L D +
Sbjct: 128 NAMGIKLGVPEPAVEKAAYIYRKAVGEKLTRGRTVSSLIAASLYAACRESGIPRTLDDMA 187
Query: 71 NYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARD 130
N+ L + + L ++ L Q D S F+ K + L G +K A D
Sbjct: 188 RVSNVERRILSRDLRTMLRKLGMS-----LTQYDTSSFITKIANNL--GLKEKTKRDAVD 240
Query: 131 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKR 184
+L + IT G+ P AALY++ + +G S+ + + + T+ R
Sbjct: 241 LLRRAEEIKITAGKNPVAQAAAALYIACMNNGEGISQKSFSREAGVSDVTVRNR 294
>gi|443927143|gb|ELU45667.1| transcription initiation factor IIB [Rhizoctonia solani AG-1 IA]
Length = 354
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 90/217 (41%), Gaps = 22/217 (10%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF D+ M ++++ ++ + AK+ Y A +G+ + V A C+ +ACRQ
Sbjct: 134 MMTAFRDISAMCESISLPKN--VSDTAKQLYKRAEEEKIVRGKSADAVVACCILIACRQA 191
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA--------DESNVLKQVDPSIFLHKF 112
+ P + + LG + Q ++ D + L+++
Sbjct: 192 NVPRTFKEIHQLTRVPKKTLGQCFKAFEQAFDLSRPAPADGQDGAGPASGTSAENLLNRY 251
Query: 113 TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 172
++L + V +++ + + I GR P + GAA+Y ++ G S DI
Sbjct: 252 CNQLHL--HASVVTACEEVVVTARNHGIADGRSPISIAGAAIYFTSYLLGQGKSAKDICS 309
Query: 173 IVHICEATL----------MKRLIEFENTDSGSLTIE 199
+ + E+T+ ++L++ E DSG ++
Sbjct: 310 VAGVSESTIKLVYKILWQEREKLVKKEWLDSGRAVMD 346
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S ++ EL Y + + L + ++ DP ++ +F L L
Sbjct: 195 GTPRSLDEISAVSRVDKMELTRTYRYVIRELGLE-----VQPADPESYVPRFVSDLDLSD 249
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S +++ + +G+ P GL A +Y +AL K +++++ ++ I E
Sbjct: 250 ETERM---ARELLDSARKEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEV 306
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 307 TIRNRYKEL 315
>gi|76801766|ref|YP_326774.1| transcription initiation factor TFB 3 [Natronomonas pharaonis DSM
2160]
gi|76557631|emb|CAI49214.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 319
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ N GR E V + +Y A RQ
Sbjct: 131 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQA 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + + + E+ Y + + L + ++ DP ++ +F L
Sbjct: 189 GVPRSLDEVAGVSRVEKSEIARTYRYVVRELGLE-----VQPADPESYVPRFASELEL-- 241
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+++ + AR +L + K + +G+ P GL AA+Y ++L K +++ + ++ I E T
Sbjct: 242 SEEAENRARQLLQNAKEQGVHSGKSPVGLAAAAVYAASLLTNEKTTQAAVSEVADISEVT 301
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 302 IRNRYHEL 309
>gi|392568456|gb|EIW61630.1| transcription initiation factor IIB [Trametes versicolor FP-101664
SS1]
Length = 351
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 13/189 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++ACRQ
Sbjct: 131 LLQAFRDIAGWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQA 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVD-PS------IFLHKFT 113
P + N +++ LG Y L Q + ++ + ++ PS L ++
Sbjct: 189 HVPRTFREICNLTHVSKKVLGQCYKALEQAFNLTPGASQDRHLNAPSGTTGAEDLLVRYC 248
Query: 114 DRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 172
+ L LP + +C DI+ + I GR P + G A+Y + S +I
Sbjct: 249 NHLDLPPNVQPICG---DIIVKARELGIADGRSPVSIAGGAIYFTCCLLDKPKSVKEIST 305
Query: 173 IVHICEATL 181
+ + E T+
Sbjct: 306 VAGVSEGTI 314
>gi|432328340|ref|YP_007246484.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135049|gb|AGB04318.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 313
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G ++ A Y AV +N +GR E + A+ +Y ACR+ P L + + +N
Sbjct: 139 MGLPKDVRETAAIIYRKAVEKNLIRGRSIESIVAASIYAACRKVGMPRTLDEVAKASELN 198
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
++G Y L + L + LK + ++ +F +L +K V + A +I+
Sbjct: 199 KKKIGRAYRHLTKELNLN-----LKPTTANSYITQFCSKLRL--DKNVVNKAEEIVQKAT 251
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
IT+G+ P+G+ AA+Y++A ++ +I ++ + E T+ R E
Sbjct: 252 DVGITSGKGPTGVAAAAIYIAANMLNEPRTQKEIAEVAGVTEVTIRNRYKEI 303
>gi|354612563|ref|ZP_09030512.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
gi|353189056|gb|EHB54569.1| Transcription factor TFIIB cyclin-related protein [Halobacterium
sp. DL1]
Length = 201
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 5 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF 64
++R++ +AL + SD + A + + A + +GR E + A+ +Y ACR
Sbjct: 22 LGEVRRLASALEL--SDSVRDQACQLFRSAQTEDLLRGRSIEAIAAASVYGACRCNRLSR 79
Query: 65 LLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKK 123
LL + S + + Y L + L + ES V PS+F+ + L P ++
Sbjct: 80 LLDEVSEMARVEESRVANAYKTLNEELGLPAES-----VSPSMFVPRLASDLECPDAIRQ 134
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
AR + + +TTG P+G A LY +A G ++++ + + AT+
Sbjct: 135 ---RARTLAEQAEELGVTTGVHPAGFAAACLYKAAREEGRWLTQTEAADVANASTATV 189
>gi|395329967|gb|EJF62352.1| cyclin-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 351
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +AF D+ + ++ ++ I +AK+ Y + +G+ E V A+C+++ACRQ
Sbjct: 131 LLQAFRDISNWCDQFSLPKT--ISDIAKQLYKRSDEEKLLRGKPLEAVIAACIFIACRQA 188
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQ-VDPS------IFLHKFT 113
P + N +++ LG Y L Q + ++ + + PS L ++
Sbjct: 189 HVPRTFREICNLTHVSKKVLGQCYKALEQAFNLTPGASQDRHAITPSGTTGAEDLLVRYC 248
Query: 114 DRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 172
+ L LP + +C DI+ + I GR P + G A+Y + + +I
Sbjct: 249 NHLALPPNFQPIC---ADIIVKARELGIADGRSPVSIAGGAIYFTCYLLDKPKTVREIST 305
Query: 173 IVHICEATL 181
+ + E T+
Sbjct: 306 VAGVSEGTI 314
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY A RQ
Sbjct: 137 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQA 194
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S ++ EL Y + + L + ++ DP ++ +F L L
Sbjct: 195 GTPRSLDEISAVSRVDKMELTRTYRYIIRELGLE-----VQPADPESYVPRFVSDLDLSD 249
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+++ AR++L S ++ + +G+ P GL A +Y +AL K +++++ ++ I E
Sbjct: 250 ETERM---ARELLESARKAGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEV 306
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 307 TIRNRYKEL 315
>gi|302922832|ref|XP_003053548.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734489|gb|EEU47835.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 347
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 14/193 (7%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A+ ++ + A+N+G++ + + AK + + F KG+ E V A C+++ACRQ
Sbjct: 123 LMQAYKEIVSLCEAINMGQN--VSNAAKHIFKLVDKHKFLKGKPQEAVIAGCIFIACRQN 180
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQL---CQVLYIAD-ESNVLKQV----DPSI----F 108
+ P + N +++ E+G V+ QL Q L D E+ L V + S+
Sbjct: 181 NVPRTFREIFNLTSVSKKEVGRVFKQLQSFLQKLQGQDGEATGLNAVTNYENTSVGAEDL 240
Query: 109 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKS 168
++ +L +K+ +RD+ GR P + A +Y++ G
Sbjct: 241 CGRYVSQLGFKNQQKISKISRDLAEQANEISALAGRSPLSVAAACIYMACHLVGEPRPSL 300
Query: 169 DIVKIVHICEATL 181
I K + + T+
Sbjct: 301 PIAKQAGVSDGTV 313
>gi|321470098|gb|EFX81075.1| hypothetical protein DAPPUDRAFT_50412 [Daphnia pulex]
Length = 324
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 8/213 (3%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ A++++ M A+NI +V A + KG T+ + ++CLY+ACRQ+
Sbjct: 118 LVSAYNEISNM--AVNINLPRTVVDRANCLFKNVHDGKHLKGHSTKAIASTCLYIACRQE 175
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + I+ ELG Y + + L +V+ ++ S F+ +F L
Sbjct: 176 GVPRTFKEICALTKIDKKELGRCYKLIPKAL--ETSVDVIPRITTSDFIPRFCSNLGMQL 233
Query: 121 NKKV-CDTARDI-LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 178
K + + + I L +++ D + GR P + AA+Y+++L K +K I I + +
Sbjct: 234 TKVIFLNVSLHIGLKAVELD-VVPGRSPLSVAAAAIYMASLASEKKLTKKAIGDITGVAD 292
Query: 179 ATLMKRLIEFENTDSGSLTIEDFMARKKELHEG 211
T+ ++L E + L +F +L +G
Sbjct: 293 VTI-RQLHELMYPRAAELFPPEFNLIISKLSQG 324
>gi|448351752|ref|ZP_21540546.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445632312|gb|ELY85524.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 341
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 11/196 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V + LY + RQ
Sbjct: 154 LKQALGEIDRMASALGLPEN--VRETASVIYRRALEEDLLPGRSIEGVSTASLYASARQA 211
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKF-TDRLLPG 119
P L + S + E+ Y + + L + ++ DP ++ +F +D L
Sbjct: 212 GTPRSLDEISAVSRVEKDEIARTYRYVIRELGLE-----VQPADPVSYVPRFASDLELSD 266
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ AR +L + K I +G+ P GL AA+Y AL K +++D+ ++ I E
Sbjct: 267 ETER---RARTLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQNDVSEVASISEV 323
Query: 180 TLMKRLIEFENTDSGS 195
T+ R E D G+
Sbjct: 324 TIRNRYHELLEVDGGA 339
>gi|448436023|ref|ZP_21587039.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445683183|gb|ELZ35586.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 384
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + D + A Y A++ N GR E V + LY A RQ
Sbjct: 197 LKQALGEIDRMASALGL--PDNVRETASVIYRRALSENLLPGRSIEGVATAALYAAARQV 254
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L +F+ + EL Y + + L + ++ DP+ ++ +F RL L
Sbjct: 255 GNPRSLDEFTAVSRVEKMELTRTYRYVVRELGLR-----VQPADPTSYVPRFVSRLDLSD 309
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
++ AR++L IT+G+ P GL AA+Y +AL K ++S + + + E
Sbjct: 310 ETER---RARELLDDAASAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVADVSEV 366
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 367 TIRNRYKEL 375
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,493,043,169
Number of Sequences: 23463169
Number of extensions: 307930193
Number of successful extensions: 1394549
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 2447
Number of HSP's that attempted gapping in prelim test: 1354658
Number of HSP's gapped (non-prelim): 29086
length of query: 497
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 350
effective length of database: 8,910,109,524
effective search space: 3118538333400
effective search space used: 3118538333400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)