BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010919
(497 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit OS=Mus musculus GN=Brf1
PE=1 SV=1
Length = 676
Score = 202 bits (513), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 228/473 (48%), Gaps = 70/473 (14%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 148
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 203
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEE 287
Query: 204 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 249
R K+L + ++ L ++S + + + +P A G +
Sbjct: 288 ECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLS 347
Query: 250 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSRVDKVQSPE 306
++ G + + P + E E + A++ N F RE D + D
Sbjct: 348 KD----GSGEDATSSPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAAGDPDGGSR 403
Query: 307 P---ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGY 359
P ES+ P TA++ G D + +P D + DG + S IDD E+D Y
Sbjct: 404 PLALESLLGP----LPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRY 459
Query: 360 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 419
+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 460 ILNESEARVKAELWMRENAEYLREQKEKEARIAKEK------------------ELGIY- 500
Query: 420 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 472
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 501 --------KEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>sp|Q92994|TF3B_HUMAN Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1
PE=1 SV=1
Length = 677
Score = 199 bits (505), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 153/494 (30%), Positives = 234/494 (47%), Gaps = 69/494 (13%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 126
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 187 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 227
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 228 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE-NSS 286
+ + + +P A G S ++ T E A + + ++A+A N
Sbjct: 326 DAIEIELENSRPKAKGGLASLAKDGST-----EDTASSLCGEEDTEDEELEAAASHLNKD 380
Query: 287 FERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDAT 338
RE + SPE P ++G + TA++ G D + + D
Sbjct: 381 LYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPK 439
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 440 DASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK--- 496
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 458
EL KE + K++ + + A TA EA +ML +K
Sbjct: 497 ---------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQK 532
Query: 459 RLSSKINYDVLEKL 472
++SSKINY VL L
Sbjct: 533 KISSKINYSVLRGL 546
>sp|Q9P6R0|TF3B_SCHPO Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=brf1 PE=1 SV=2
Length = 492
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/469 (26%), Positives = 220/469 (46%), Gaps = 99/469 (21%)
Query: 24 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83
+ A R++ +A+ NF KGRR++ V ASCLY+ CR +LIDFS+ L INV++LG+
Sbjct: 103 IEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGST 162
Query: 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 142
+L+LC+VL L +DPS+++ +F L G +V + A ++A M RDW+
Sbjct: 163 FLKLCRVLRPN-----LPLLDPSLYISRFASLLEFGPETHRVANDAIRLVARMNRDWMQI 217
Query: 143 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202
GR+P+G+CGA L ++A + + S ++V +V + + T+ KRL EF+ T+SG L+I DF
Sbjct: 218 GRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADITIQKRLDEFKLTESGDLSIADF- 276
Query: 203 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 262
R+ + E G
Sbjct: 277 -------------------------------------------RNIWLE---------GQ 284
Query: 263 ADPPAFQVAERERMVKASAEENSSFERESDSPF---------------MSRVDKVQSPE- 306
+DPP+F ++ + A N +E SP +S+ KV+S E
Sbjct: 285 SDPPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQET 344
Query: 307 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEK 366
P + + + + +GD + + + S+ D+DD E++ L +++E
Sbjct: 345 PVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEI 404
Query: 367 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 426
K +W E+N++YL E+ AK L+ ++L + +
Sbjct: 405 LTKTQVWMELNKDYLAEEEAK--------------------NLKLQEDL----KKGIVRQ 440
Query: 427 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 475
+++++ R ++ + G A TA E+ + M+ ++ S KINY+ L+ LFD+
Sbjct: 441 PRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489
>sp|P46070|TF3B_KLULA Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=TDS4 PE=3 SV=2
Length = 556
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 7/205 (3%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR++ +LI
Sbjct: 98 LKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLI 155
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 126
DFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L G K KV
Sbjct: 156 DFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLELGDKKIKVIR 211
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+IV I H+ E TL +RL
Sbjct: 212 DAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETLQQRLN 271
Query: 187 EFENTDSGSLTIEDFMARKKELHEG 211
EF+NT S L++++F + E++EG
Sbjct: 272 EFKNTTSAKLSVKEFRDDETEVNEG 296
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 398
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 399 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 458
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 459 RLSSKINYDVLEKLF 473
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>sp|P29056|TF3B_YEAST Transcription factor IIIB 70 kDa subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BRF1 PE=1
SV=1
Length = 596
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVA 213
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 339 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 394
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 395 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 449
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 450 ATRRMLTKKRLSSKINYDVLEKLF 473
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>sp|P43072|TF3B_CANAL Transcription factor IIIB 70 kDa subunit OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=TDS4 PE=3 SV=1
Length = 553
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 134/508 (26%), Positives = 226/508 (44%), Gaps = 97/508 (19%)
Query: 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 67
++++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 95 IKRIAAALKI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLI 152
Query: 68 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 126
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 153 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAK 208
Query: 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 209 DAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLN 268
Query: 187 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMN---------------EVLC 231
EF+ T +G+L+++ F +E+ E + ++ P + K M E L
Sbjct: 269 EFKKTKAGTLSVKSF----REV-ENLESSNPPSFEKNRAMELKISKKLQQQQTDNFEDLS 323
Query: 232 KHKDTGKPFACG-----------LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKAS 280
K + K G L + + +E L D R +K S
Sbjct: 324 KMTEEEKQSVFGKLSKEEAQKQLLMNTILSDITITTENLNDQMD--------RILKMKKS 375
Query: 281 AEENSSFERESDSPFMSRVDKVQSPEPE---SIGVPKNCTTQTASNEGEGDHTKTPGVDA 337
+ ENS ++ +P+ + +P +I PKN P D
Sbjct: 376 SLENSLYK----TPYELALANGSEQDPSKIWNINKPKNLVAN------------LPKTDD 419
Query: 338 TTE--ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 395
+ +S+ N D D+ ++ L EEE K+ IW +N +YL EQ K
Sbjct: 420 ILQNVSSEVELNSDDDDEIVLESKL-TEEEVAIKERIWTGLNHDYLVEQEKKRLK----- 473
Query: 396 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKR-AAEAKN---------SGPAQ 445
Q A EL + + + +R+++ + AE + G +
Sbjct: 474 --------------QEADELTGNTSKSSSGNRRKRNKSSLPAELRKELGDIDLDEDGTPR 519
Query: 446 TALEATRRMLTKKRLSSKINYDVLEKLF 473
+A ++ + ++K +S KINYD L+ L
Sbjct: 520 SAADSAKMYISKTSVSKKINYDSLKGLL 547
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL R +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYRRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYKRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 27 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 86
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEIGRSFR- 191
Query: 87 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 143
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYQRGLTSG 244
Query: 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 95/189 (50%), Gaps = 11/189 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G E+ A Y A++ + GR E V + LY + RQ
Sbjct: 139 LKQALGEIERMASAL--GLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQL 196
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
S P + + +N I+ E Y + + L + + DP+ ++ +F L LP
Sbjct: 197 STPRSIDEVANVSRIDEMEFKRTYRYIVRELSLE-----VAPADPAQYVPRFASDLDLP- 250
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+V +R+++++ + D +T+G+ P GL AA+Y S+L K ++S++ ++ + E
Sbjct: 251 --DEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEV 308
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 309 TIRNRYQEL 317
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + +S + A Y AV +N +GR E V A+ LY ACRQ P
Sbjct: 141 ALSELDRMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVP 198
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + Y ++ E+G Y + + L + L P+ ++ +F L G + +
Sbjct: 199 RTLDEIATYSRVDRKEIGRTYRFITRELGLK-----LMPTSPADYIPRFCAAL--GLSGE 251
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + +T+GR P+G+ AALYV+++ G + ++ ++ ++ + E T+
Sbjct: 252 VQKKAIEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRN 311
Query: 184 RLIEF 188
R E
Sbjct: 312 RYKEL 316
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 94/188 (50%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+
Sbjct: 120 LAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 178 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ +V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 231 SGRVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 290
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 291 VRNRYKEL 298
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A +++ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+
Sbjct: 120 LAQAMNELERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRM 177
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
L + + Y N E+ Y L + L ++ + DP ++ + + L G
Sbjct: 178 KLARTLDEIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GL 230
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ V TA +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T
Sbjct: 231 SGAVMKTAAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVT 290
Query: 181 LMKRLIEF 188
+ R E
Sbjct: 291 VRNRYKEL 298
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ +M + L+I D++ A Y AV +N +GR E V A LY ACR
Sbjct: 124 LSQALQELERMASNLSI--PDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRIT 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRLL 117
+ P L + ++ + E+G Y + + L + N++ PS ++ +F +L
Sbjct: 182 NVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCSKLK 233
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+ + + A +IL S + +T+G+ P+G+ AA+Y+++L G + ++ + ++ +
Sbjct: 234 LSMDTR--NKALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVT 291
Query: 178 EATLMKRLIEFENTDSGSLTIE 199
E T+ R E T+ L +E
Sbjct: 292 EVTIRNRYKEL--TEKLQLNVE 311
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P
Sbjct: 134 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIP 191
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + I+ E+G Y + Q L + ++ DP +L +F L +++
Sbjct: 192 RTLEEVTEVARIDQKEIGRTYRYVAQELSLE-----IQPTDPKEYLPRFASDLEL--SEE 244
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V AR+I+ + + +G+ PSG AA+Y ++L K ++ ++ + ++ E T+
Sbjct: 245 VIAKAREIIDTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEVTIRN 304
Query: 184 RLIE 187
R E
Sbjct: 305 RYQE 308
>sp|Q9Y942|TF2B_AERPE Transcription initiation factor IIB OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=tfb PE=3 SV=2
Length = 322
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Query: 14 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73
A +G + +V A + Y A+ + T+GR E + A+ LY A R P L D +
Sbjct: 131 ASRMGMPEIVVEDASKIYREAMEKGLTRGRSIESIVAASLYAASRIHGLPHSLTDIIKAM 190
Query: 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 133
NV + L + D + + P F++ L G + V A I+
Sbjct: 191 KGNVDAETRRDVARSYRLLVRDLNIKIPVRKPENFVYTIISAL--GLPEHVAIEAIKIID 248
Query: 134 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
++ +T G+ P GL GAA+Y++AL HG++ ++ +I +V + E T+ R E
Sbjct: 249 LSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEIAHVVGVTEVTIRNRYKEI 303
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 190
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ + +T+GR P+G+ AALY++++ G ++ D+ ++ + E T+ R E E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTEQ 303
Query: 191 TDSG 194
D G
Sbjct: 304 LDLG 307
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 99/202 (49%), Gaps = 17/202 (8%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+ +A ++ +M A N+ +++ A Y AV +N +GR E V A LY ACR
Sbjct: 124 LSQALQELERM--AFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRIT 181
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRLL 117
+ P L + ++ + E+G Y + + L + N++ PS ++ +F +L
Sbjct: 182 NVPRTLGEIASVTRVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCSKLK 233
Query: 118 PGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177
+ + + A +IL + +T+G+ P+G+ AA+Y+++L G + ++ + ++ +
Sbjct: 234 LSMDTR--NKALEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVT 291
Query: 178 EATLMKRLIEFENTDSGSLTIE 199
E T+ R E T+ L +E
Sbjct: 292 EVTIRNRYKEL--TEKLKLNVE 311
>sp|A8MCX6|TF2B_CALMQ Transcription initiation factor IIB OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=tfb PE=3 SV=1
Length = 336
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 3 KAFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+A ++ ++ + L + +S DE + V Y + KGR E + A+CL++ACR +
Sbjct: 149 QATHELNRIAHQLGVPKSCMDEALAV----YKQVLKSGLVKGRSVEAIIAACLHMACRMQ 204
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P L + S Y E+ + + + L I L DP ++ K ++L LPG
Sbjct: 205 GMPRSLDEISQYTRAPRKEIARCFRLIARELRIR-----LPLSDPRQYVPKIVEQLKLPG 259
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
+ A +L K +T G+ P+GL AA+Y+++L G ++ +I + + E
Sbjct: 260 D---IAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIASLLKGEVRTQKEIAQAAQVTEV 316
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 317 TVRNRYKEL 325
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A +++ +M N LN+ +I A Y AV + +GR E V A+ +Y ACR +P
Sbjct: 122 AMNELDRMANLLNL--PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQP 179
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPG 119
L + + L +N E+ Y + + L IAD + + ++ ++ L
Sbjct: 180 RTLDEIAKKLEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLR--------- 230
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
G+ + + A I+ +K IT G+ P+G+ A +Y++ + G + ++ +I + + E
Sbjct: 231 GD--IIEYAMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEV 288
Query: 180 TLMKRLIEF 188
T+ R E
Sbjct: 289 TVRNRYKEI 297
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ P L + ++
Sbjct: 132 RDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIAD 191
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
++ E+G Y L + L+I L P ++ +F L G V A +I
Sbjct: 192 VSRVSKKEVGRTYRFLTRELHIR-----LPPTSPIDYVPRFASELNLSG--VVQSKAIEI 244
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 190
+ + +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 304
Query: 191 TDSG 194
D G
Sbjct: 305 LDMG 308
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 10/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+AF ++ + + L + ES + +A Y A +GR E V + ++ AC++
Sbjct: 120 QAFLELENLASKLQLPES--VRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARV 177
Query: 63 PFLLIDFSNYLNI-NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGN 121
P + + L + + E+ Y L + L + K +PS L +F +L G +
Sbjct: 178 PRTAREIAEALGVSDENEILRAYRVLQRRLNLKQ-----KPTEPSDHLPRFASKL--GVS 230
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+ V A++I+ K IT G+ P+G+ AALY++++ G + ++ +I ++ + E T+
Sbjct: 231 ENVQAKAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVARVTEVTI 290
Query: 182 MKRLIEF 188
R E
Sbjct: 291 RNRYKEI 297
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 12 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 71
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 72 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 131
+ E+G Y L + L I L P ++ +F L G + A +I
Sbjct: 191 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELGLSGEAQ--SRAIEI 243
Query: 132 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E
Sbjct: 244 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKEL 300
>sp|Q8ZWS3|TF2B_PYRAE Transcription initiation factor IIB OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=tfb PE=3 SV=1
Length = 333
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++++A+ I + A Y A+ + +GR E + A+ LY+ACR
Sbjct: 146 QAAQELERLRSAMGIPRP--CIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKM 203
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP +++ + ++L G
Sbjct: 204 PRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPILYISRIAEQLKLSG- 256
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 257 -EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 182 MKRLIEF 188
R E
Sbjct: 316 RNRYKEL 322
>sp|B1YCX0|TF2B_PYRNV Transcription initiation factor IIB OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=tfb PE=3 SV=1
Length = 333
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++++++ I + A Y A+ + +GR E + A+ LY+ACR
Sbjct: 146 QAAQELERLRSSMGIPRP--CIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKM 203
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP++++ + ++L G
Sbjct: 204 PRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPTLYISRIAEQLKLSG- 256
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V TA DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 257 -EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 182 MKRLIEF 188
R E
Sbjct: 316 RNRYKEL 322
>sp|Q58192|TF2B_METJA Transcription initiation factor IIB OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=tfb PE=3 SV=1
Length = 673
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 512 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 567
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 568 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 622
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 623 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 663
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + S + VA Y A+ + +GR E V S LY ACR++ P
Sbjct: 140 ALSEIDRMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIP 197
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + S + E+G Y + Q L + +K VDP ++ +F L ++
Sbjct: 198 RSLEEISEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELEL--TEE 250
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+
Sbjct: 251 VQSKANEIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRN 310
Query: 184 RLIE 187
R E
Sbjct: 311 RYQE 314
>sp|Q9P9I7|TF2B_METTL Transcription initiation factor IIB OS=Methanococcus
thermolithotrophicus GN=tfb PE=3 SV=1
Length = 339
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLTPTNPIDYVPRFASELKLPG---EVESKAISILQKANEKGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|A1RV37|TF2B_PYRIL Transcription initiation factor IIB OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=tfb PE=3 SV=1
Length = 333
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 16 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 75
++G V A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 157 SMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKA 216
Query: 76 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 134
+ E+ Y L + E NV + DP +++ + ++L G +V TA +IL
Sbjct: 217 SRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG--EVVKTAIEILQK 268
Query: 135 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191
K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R E T
Sbjct: 269 AKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTVRNRYKELAKT 325
>sp|A4WMA6|TF2B_PYRAR Transcription initiation factor IIB OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=tfb PE=3 SV=1
Length = 333
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK 62
+A ++ ++K+++ G V A Y A+ + +GR E + A+ LY+ACR
Sbjct: 146 QAAQELERLKSSM--GVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRM 203
Query: 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGN 121
P L + Y + E+ Y L + E NV + DP +++ + ++L G
Sbjct: 204 PRPLDELVRYTKASRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG- 256
Query: 122 KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 181
+V A DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+
Sbjct: 257 -EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 182 MKRLIEF 188
R E
Sbjct: 316 RNRYKEL 322
>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain
6A8) GN=tfb PE=3 SV=1
Length = 334
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 149 ALSELDRMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 206
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 207 RTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG-- 258
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 259 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 318
Query: 183 KRLIEF 188
R E
Sbjct: 319 NRYKEL 324
>sp|A6VI28|TF2B_METM7 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=tfb PE=3 SV=1
Length = 339
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 149 ALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 206
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKK 123
L + + ++ E+G Y + + L + L P ++ +F L G +
Sbjct: 207 RTLDEIAEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLTLKG--E 259
Query: 124 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMK 183
V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 260 VQSRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRN 319
Query: 184 RLIEF 188
R E
Sbjct: 320 RYKEL 324
>sp|A9A8Q0|TF2B_METM6 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=tfb PE=3 SV=1
Length = 339
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 11/186 (5%)
Query: 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKP 63
A ++ +M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P
Sbjct: 152 ALSELDRMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVP 209
Query: 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNK 122
L + + ++ E+G Y +I+ E + L P ++ +F L G
Sbjct: 210 RTLDEIAEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG-- 261
Query: 123 KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182
+V A +IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+
Sbjct: 262 EVQSRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIR 321
Query: 183 KRLIEF 188
R E
Sbjct: 322 NRYKEL 327
>sp|Q6M176|TF2B_METMP Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain S2 / LL) GN=tfb PE=3 SV=1
Length = 339
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|A6UW60|TF2B_META3 Transcription initiation factor IIB OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=tfb PE=3 SV=1
Length = 334
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 173 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIGRTYRFISR 232
Query: 90 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 148
L I L P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 233 ELKIR-----LAPTSPIDYVPRFASELKLPG---EVESKAISILQKAGDKGLTSGRGPTG 284
Query: 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 285 VAAAAIYIASVLHGTRKTQREVADVAGVTEVTIRNRYKEL 324
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 26 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 85
VA Y AV + +GR E + ++ LY ACR + P L + ++ ++ E+G Y
Sbjct: 141 VAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASVSKVSKKEIGRSYR 200
Query: 86 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRK 145
+ + L + L+ P ++ +F D L G + + A++IL + IT+G+
Sbjct: 201 FMARGLGLN-----LRPTSPIEYVDRFGDAL--GVSARTKKRAKEILNEAIKRGITSGKG 253
Query: 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
P+GL AALY++AL G K ++ ++ ++ H+ E T+ R E
Sbjct: 254 PTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKEL 296
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 12/194 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL G D + A Y A+ + GR E V SC+Y A RQ
Sbjct: 132 LKQALGEIDRMASAL--GLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQA 189
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ + E+ Y + + L + + DP ++ +F L G
Sbjct: 190 GVPRSLDEIADVSRVEKAEIARTYRYVVRELGLE-----VAPADPESYVPRFASDL--GL 242
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR++L + K + +G+ P GL AA+Y +AL K +++ + ++ I E T
Sbjct: 243 SDEASHRARELLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVADISEVT 302
Query: 181 LMKR---LIEFENT 191
+ R L+E E+T
Sbjct: 303 IRNRYHELLEAEDT 316
>sp|A4G0F2|TF2B_METM5 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=tfb PE=3 SV=1
Length = 339
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 30 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 89
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 90 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 147
+I+ E N+ L +P ++ +F L LPG +V A IL +T+ R P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSSRGPT 288
Query: 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
+++A ++ +M +AL + E+ + A Y A+ + GR E V S LY + R
Sbjct: 144 LKQALGEIDRMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYASARMA 201
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P L + ++ EL Y + + L + +K DP ++ +F L G
Sbjct: 202 GTPRSLDELEKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GL 254
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
+ + AR +L K I +G+ P GL AA+Y +AL K ++S++ + I E T
Sbjct: 255 SDEAERQARQLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVT 314
Query: 181 LMKRLIEFENTDSGSL 196
+ R E G+L
Sbjct: 315 IRNRYKELLEVQDGTL 330
>sp|Q9HJM2|TF2B2_THEAC Transcription initiation factor IIB 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbB PE=3 SV=1
Length = 307
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G +I A Y AV +N +GR E + + +Y ACR+ + P L + S +N
Sbjct: 133 LGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEISKASEVN 192
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
++G Y L + L + LK P ++ +F ++L +K+ + DI+
Sbjct: 193 KKKIGKAYRHLAKELDLN-----LKPTTPFSYISQFCNKL--DLDKQAIVISEDIVRQAM 245
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 246 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 297
>sp|Q979P7|TF2B2_THEVO Transcription initiation factor IIB 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbB PE=3 SV=1
Length = 313
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 17 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 76
+G +I + Y AV +N +GR E + + +Y ACR+ + P L + + +N
Sbjct: 139 LGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIAKASEVN 198
Query: 77 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 136
++G Y L + L + L+ P ++ +F ++L +K+ + DI+
Sbjct: 199 KKKIGKAYRHLAKELDLN-----LRPTTPFSYIAQFCNKL--DLDKQAIVISEDIVRQAM 251
Query: 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 252 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 303
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 11/188 (5%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + I+ + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITNMSDRINLPRN--IIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 120
P + I+ E+G + + + L E+NV + F+ +F L G
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV-DLITTGDFMSRFCSNL--GL 224
Query: 121 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 180
K+V A I + GR P + AA+Y+++ K ++ +I I + + T
Sbjct: 225 TKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVT 284
Query: 181 LMK--RLI 186
+ + RLI
Sbjct: 285 IRQSYRLI 292
>sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2
SV=1
Length = 316
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B
PE=2 SV=1
Length = 316
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1
SV=1
Length = 316
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
>sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b
PE=2 SV=1
Length = 316
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 60
M AF ++ M + +N+ + IV + + KGR + + ++CLY+ACRQ+
Sbjct: 114 MMNAFKEITTMADRINLPRN--IVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 171
Query: 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 119
P + I+ E+G + + + L E++V + F+ +F L LP
Sbjct: 172 GVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETSV-DLITTGDFMSRFCSNLCLP- 225
Query: 120 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 179
K+V A I + GR P + AA+Y+++ K ++ +I I + +
Sbjct: 226 --KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADV 283
Query: 180 TLMK--RLI 186
T+ + RLI
Sbjct: 284 TIRQSYRLI 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,241,055
Number of Sequences: 539616
Number of extensions: 7578030
Number of successful extensions: 33539
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 324
Number of HSP's that attempted gapping in prelim test: 31653
Number of HSP's gapped (non-prelim): 1486
length of query: 497
length of database: 191,569,459
effective HSP length: 122
effective length of query: 375
effective length of database: 125,736,307
effective search space: 47151115125
effective search space used: 47151115125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)