BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010920
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YR 81
AG D +R L + GA + DK+G TPL +A + G + + + L++ GA++NA Y
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGYT 70
Query: 82 P----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
P A+ G V +LL GA+ ++ D +T L +A +GH+ +V +
Sbjct: 71 PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP 82
G ++ + L GA + DK+G TPL +A + G + + + L++ GA++NA Y P
Sbjct: 46 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGYTP 104
Query: 83 ----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128
A+ G V +LL GA+ ++ T +A +GH ++ ++
Sbjct: 105 LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
A+ G + VR+L++ GA+ ++ D +T L +A +GH+ +V +
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YR 81
AG D +R L + GA + DK+G TPL +A + G + + + L++ GA++NA Y
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAKDKDGYT 70
Query: 82 P----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
P A+ G V +LL GA+ ++ D +T L +A +GH+ +V +
Sbjct: 71 PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 32.0 bits (71), Expect = 0.79, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
A+ G + VR+L++ GA+ ++ D +T L +A +GH+ +V +
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 10/116 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + DK+G TPL +A + G + + + L++ GA++NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNAK 76
Query: 80 ----YRP----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
Y P A+ G V +LL GA+ ++ D +T L +A +GH+ +V +
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 10/109 (9%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
G ++ ++ L GA + DK G+TPL +A + G + V K L+E GA++NA
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 80 -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ A+ G V+LLL GA+ ++ + T L +A GH+ VV+ +
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 50 GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
G+TPL +A + G + V K L+E GA++NA + A+ G V+LLL GA+
Sbjct: 2 GRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 101 ALVRNDDCHTALGVARIKGHINVVRAI 127
++ + T L +A GH+ VV+ +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLL 87
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L+ G + ++ L S+GA + D +G+TPL A + G + K LI GA++NA
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE-GHKEIVKLLISKGADVNAK 99
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
+ AK G + V+LL+S GA+ + D T L +AR G+ +V+ +E
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ- 158
Query: 132 CYFCGWL 138
GWL
Sbjct: 159 ---GGWL 162
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 55 IVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGANALVRN 105
++ ++G + K LIE GA++NA + AK G + V+LL+S GA+ ++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 106 DDCHTALGVARIKGHINVVRAI 127
D T L A +GH +V+ +
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLL 89
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L+ G + ++ L SQGA D +GKTPL +A ++G V K L+ GA+ NA
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA-ENGHKEVVKLLLSQGADPNAK 99
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
+ A+ G + V+LLLS GA+ + D T L +AR G+ VV+ +E
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ- 158
Query: 132 CYFCGWLR 139
GWL
Sbjct: 159 ---GGWLE 163
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + G+ D ++ L GA + D +GKTPL +A ++G V K L+ GA+ NA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAA-ENGHKEVVKLLLSQGADPNAK 66
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 129
+ A+ G + V+LLLS GA+ ++ D T L +A GH VV+ + S
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + D +G TPL +A +G + + + L++ GA++NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAA-SNGHLEIVEVLLKNGADVNAS 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ A G V +LL GA+ ++D HT L +A GH+ +V + H
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + G+ D ++ L GA + D +G+TPL A ++G V K LI GA++NA
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAA-ENGHKEVVKLLISKGADVNAK 66
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ A+ G + V+LL+S GA+ ++ D T L A GH VV+ +
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L+ G + ++ L S+GA D +G+TPL A ++G + K L+ GA+ NA
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA-ENGHKEIVKLLLSKGADPNAK 99
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
+ A+ G + V+LLLS GA+ + D T L +AR G+ +V+ +E
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ- 158
Query: 132 CYFCGWL 138
GWL
Sbjct: 159 ---GGWL 162
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 55 IVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGANALVRN 105
++ ++G + K L+E GA+ NA + A+ G + V+LLLS GA+ ++
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 106 DDCHTALGVARIKGHINVVRAIES 129
D T L A GH +V+ + S
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLS 91
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 64/107 (59%), Gaps = 15/107 (14%)
Query: 31 DAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINA---------Y 80
+ ++ L +GA ++ +D K G++PLI A ++ L ++ + L++ GAN+NA +
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMVQLLLQHGANVNAQMYSGSSALH 188
Query: 81 RPAKRGLEPTVRLLLSCGANALVRNDDCH--TALGVARIKGHINVVR 125
+ RGL P VR L+ GA++ ++N CH T L VAR + I+++R
Sbjct: 189 SASGRGLLPLVRTLVRSGADSSLKN--CHNDTPLMVARSRRVIDILR 233
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
C++C E + PCGH C SC +++++ CPVCR+++ V +Y
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVY 66
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
AG D +R L + GA + D G TPL +A +G + + + L++ GA++NA
Sbjct: 24 AGQDDEVRILMANGADVNATDWLGHTPLHLAAK-TGHLEIVEVLLKYGADVNAWDNYGAT 82
Query: 80 --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ A G V +LL GA+ ++ + T L +A GH+ +V +
Sbjct: 83 PLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + D G TPL +A G + + + L++ GA++NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAAR-VGHLEIVEVLLKNGADVNAL 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDC--HTALGVARIKGHINVVRAI 127
+ AKRG V +LL GA+ V DD T L +A GH+ +V +
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGAD--VNADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
G ++ + L GA + D G TPL +A D+G + + + L++ GA++NA
Sbjct: 91 GHLEIVEVLLKYGADVNADDTIGSTPLHLAA-DTGHLEIVEVLLKYGADVNA 141
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L + AG D +R L + GA + D G TPL +A +G + + + L++ GA++NA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF-NGHLEIVEVLLKNGADVNAV 76
Query: 81 RPAKRGLEP-----------TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
A G+ P V +LL GA+ + + HT L +A + GH+ +V +
Sbjct: 77 DHA--GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 50 GKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLLSCGAN 100
G+TPL +A + G + V K L+E GA++NA + A+ G V+LLL GA+
Sbjct: 2 GRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 101 ALVRNDDCHTALGVARIKGHINVVRAI 127
++ + T L +A GH+ VV+ +
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
G ++ ++ L GA + DK G+TPL +A + G + V K L+E GA++NA
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 80 -YRPAKRGLEPTVRLLLSCGA 99
+ A+ G V+LLL GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAGA 92
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + D G TPL +A G + + + L++ GA++NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAY-FGHLEIVEVLLKNGADVNAD 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ A RG V +LL GA+ + + T L +A GH+ +V + H
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + D GKTPL +A + G + + + L++ GA++NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAI-KGHLEIVEVLLKHGADVNAA 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ A G V +LL GA+ + T L +A GH+ +V +
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 81 RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
A+ G + VR+L++ GA+ +D T L +A IKGH+ +V + H
Sbjct: 20 EAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
L+ + G ++ + L GA + D G TPL +A D+G + + + L++ GA++NA
Sbjct: 84 LHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA-DAGHLEIVEVLLKYGADVNA 141
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + D G TPL +A G + + + L++ GA++NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAH-FGHLEIVEVLLKNGADVNAK 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ A+RG V +LL GA+ + T L +A +GH+ +V +
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR----- 81
AG D +R L + GA + D G TPL +A G + + + L++ GA++NAY
Sbjct: 24 AGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAYDTLGST 82
Query: 82 ----PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
A G V +LL GA+ ++D+ T L +A +GH+ +V +
Sbjct: 83 PLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 446 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
CVIC P G V GH+ C +C ++K + CPVCR I ++ Y
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 446 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
CVIC P G V GH+ C +C ++K + CPVCR I ++ Y
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
AG D +R L + GA D G+TPL +A G + + + L+ GA++NA
Sbjct: 12 AGQDDEVRILMANGADANAYDHYGRTPLHMAAA-VGHLEIVEVLLRNGADVNAVDTNGTT 70
Query: 80 --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ A G V +LL GA+ ++ T L +A GH+ +V + H
Sbjct: 71 PLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + +D G TPL +A + SG + + + L++ GA+++A
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAV-SGHLEIVEVLLKHGADVDAA 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ A G V +LL GA+ + T L +A +GH+ +V +
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L+ ++G ++ + L GA ++ D G TPL +A M +G + + + L++ GA++NA+
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVNAF 109
Query: 81 R---------PAKRGLEPTVRLLLSCGAN 100
A G V +LL GA+
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
L+ + G ++ + L GA + D G TPL +A D G + + + L++ GA++NA
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA-DEGHLEIVEVLLKYGADVNA 141
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 81 RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
A+ G + VR+L++ GA+ ++ T L +A + GH+ +V + H
Sbjct: 20 EAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + D +G TPL +A G + + L++ GA++NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAW-IGHPEIVEVLLKHGADVNAR 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ A G V +LL GA+ ++ T L +A +GH+ +V + H
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
G ++ + L GA + D G TPL +A D G + + + L++ GA++NA
Sbjct: 91 GHLEIVEVLLKYGADVNAQDAYGLTPLHLAA-DRGHLEIVEVLLKHGADVNA 141
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
+C +C + V +PCGH+ C C ++ CP+CR+ I +R +
Sbjct: 26 TCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIKGTVRTF 72
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-----RP 82
G + + L GA + + K ++ L +AC G ++ K L++ G ++N Y P
Sbjct: 63 GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYDWNGGTP 121
Query: 83 AKRGLEPT----VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL 138
+ V++LL GA+ + D + ++ +A G+ +V + IESH+ +
Sbjct: 122 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 181
Query: 139 RE 140
+E
Sbjct: 182 KE 183
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + D G TPL +A G + + + L++ GA++NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAI 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ A G V +LL GA+ + T L +A I GH+ +V + H
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
AG D +R L + GA + DK G TPL +A + G + V K L+E GA++NA
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVNA 67
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
A+ G + VR+L++ GA+ ++ + T L +A GH+ VV+ +
Sbjct: 14 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 58
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L + AG D +R L + GA + D G TPL +A G + + + L++ GA++NA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAAT-YGHLEIVEVLLKHGADVNAI 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ A G V +LL GA+ + T L +A I GH+ +V + H
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-----RP 82
G + + L GA + + K ++ L +AC G ++ K L++ G ++N Y P
Sbjct: 47 GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYDWNGGTP 105
Query: 83 AKRGLEPT----VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL 138
+ V++LL GA+ + D + ++ +A G+ +V + IESH+ +
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Query: 139 RE 140
+E
Sbjct: 166 KE 167
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
L + AG D +R L + GA + D G TPL +A + G + + + L++ GA++NA
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAAN-GQLEIVEVLLKNGADVNAS 68
Query: 81 RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE 140
A G+ P L +A GH+ +V + H + R
Sbjct: 69 DSA--GITP----------------------LHLAAYDGHLEIVEVLLKHGADVNAYDRA 104
Query: 141 FYGPSFLEALAPQL 154
+ P L AL+ QL
Sbjct: 105 GWTPLHLAALSGQL 118
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
G ++ + L GA + D+ G TPL +A + SG + + + L++ GA++NA
Sbjct: 83 GHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL-SGQLEIVEVLLKHGADVNA 133
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
AG D +R L + GA + D G TPL + +++G + + + L++ A++NA
Sbjct: 24 AGQDDEVRILMANGADVNANDWFGITPLHL-VVNNGHLEIIEVLLKYAADVNASDKSGWT 82
Query: 80 --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ A RG V +LL GA+ + +T L +A GH+ +V +
Sbjct: 83 PLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
G ++ + L GA + MD +G TPL +A D G + + + L++ GA++NA
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED-GHLEIVEVLLKYGADVNA 141
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-----RP 82
G + + L GA + + K ++ L +AC G ++ K L++ G ++N Y P
Sbjct: 45 GQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYDWNGGTP 103
Query: 83 AKRGLEPT----VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
+ V++LL GA+ + D + ++ +A G+ +V + IESH+
Sbjct: 104 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 156
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
+C +C + V +PCGH+ C C ++ CP+CR I +R +
Sbjct: 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSLRK----CPICRGIIKGTVRTF 343
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------YRPAKRGLEPTVRLLL 95
W K+G TPL A + G K L+ GA++NA + AK G V+LLL
Sbjct: 4 WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 96 SCGANALVRNDDCHTALGVARIKGHINVVRAIES 129
+ GA+ R+ D +T +A+ GH +V+ +++
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 25/104 (24%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRG 86
AG D +R L + GA + D++G TPL +A D + + + L++ GA++NA+
Sbjct: 24 AGQDDEVRILMANGADVNANDRKGNTPLHLAA-DYDHLEIVEVLLKHGADVNAH------ 76
Query: 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
++D T L +A + GH+ +V + H
Sbjct: 77 ------------------DNDGSTPLHLAALFGHLEIVEVLLKH 102
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 22 YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
+ W + GD+D ++ ++G + + G+ PL A D G + + + L+ GA+INA
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 63
Query: 81 RPAKRGLEP-----------TVRLLLSCGANALVRNDDCHTAL 112
P K + P V+LLLS GA+ V+ D TAL
Sbjct: 64 -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
C+IC E +E + C H + C C++E +K +CP+CR I
Sbjct: 56 CIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
C+IC E +E + C H + C C++E +K +CP+CR I
Sbjct: 56 CIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 97
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 25/104 (24%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRG 86
AG D +R L + GA + +D++G TPL +A G + + + L++ GA++NA G
Sbjct: 24 AGQDDEVRILMANGADVNALDEDGLTPLHLAA-QLGHLEIVEVLLKYGADVNA--EDNFG 80
Query: 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ P L +A I+GH+ +V + H
Sbjct: 81 ITP----------------------LHLAAIRGHLEIVEVLLKH 102
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
AG D +R L + GA + DK G TPL +A + G + V K L+E GA++ A
Sbjct: 34 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXA 85
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
A+ G + VR+L++ GA+ ++ + T L +A GH+ VV+ +
Sbjct: 32 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
AG D +R L + GA + DK+G TPL +A + G + + + L++ GA++NA
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAARE-GHLEIVEVLLKAGADVNA 63
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
A+ G + VR+L++ GA+ ++ D +T L +A +GH+ +V +
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 446 CVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
C +C + P +G + GH+ C C +K CP+C+ +I VI+++
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
C+IC E +E + C H + C C++E +K +CP+CR I
Sbjct: 67 CIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 108
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRG 86
+GD + + L +GA + + + +G T L AC+D +++ K L+E GANIN +P G
Sbjct: 50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENGANIN--QPDNEG 106
Query: 87 LEPTVRLLLSCG 98
P + SCG
Sbjct: 107 WIP-LHAAASCG 117
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
L+Q I +VD ++ L GA++ D EG PL A G +++A+ LI GA++ A
Sbjct: 77 LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA-SCGYLDIAEYLISQGAHVGA 134
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 15/103 (14%)
Query: 22 YQWVIA-GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY 80
+ W + GD+D ++ ++G + + G+ PL A D G + + + L+ GA+INA
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA- 68
Query: 81 RPAKRGLEP-----------TVRLLLSCGANALVRNDDCHTAL 112
P K + P V+LLLS GA+ V+ D TA
Sbjct: 69 -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L+ G + ++ L +GAS + + +TPL +A +G VAK L++ A +NA
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA-RAGHTEVAKYLLQNKAKVNAK 76
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ A+ G V+LLL AN + HT L +A +GH+ V A+
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 10/133 (7%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
L+ V ++D ++ L +G S G TPL +A + + VA++L++ G + NA
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ-VEVARSLLQYGGSANAE 241
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131
+ A+ G V LLLS AN + N T L + +GH+ V + H
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 132 CYFCGWLREFYGP 144
R Y P
Sbjct: 302 VMVDATTRMGYTP 314
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-----YRP 82
G V L G ++ + G TPL VA G I + K L++ A++NA Y P
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVAS-HYGNIKLVKFLLQHQADVNAKTKLGYSP 347
Query: 83 ----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128
A++G V LLL GA+ + D T L +A+ G+I+V ++
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87
G V+ + AL + AS M K+G TPL VA G + VA+ L+E A+ NA K GL
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAA-KYGKVRVAELLLERDAHPNA--AGKNGL 180
Query: 88 EP-----------TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
P V+LLL G + + +T L +A + + V R++
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 25/101 (24%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRG 86
AG D +R L + GA + MD G TPL +A AKRG
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLA-------------------------AKRG 58
Query: 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
V +LL GA+ R+ T L +A GH+ +V +
Sbjct: 59 HLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Score = 32.3 bits (72), Expect = 0.59, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
G ++ + L GA + D G+TPL +A G + + + L+E GA++NA
Sbjct: 58 GHLEIVEVLLKHGADVNARDIWGRTPLHLAAT-VGHLEIVEVLLEYGADVNA 108
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ G + VR+L++ GA+ +D T L +A +GH+ +V + H
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR---------PAKRG 86
L S+G+++ D GKTPL+ + + G ++ L+E GAN+N +K G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
Query: 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125
V+ LL GA+ R+ TA ARI G V++
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 25 VIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAK 84
+I G + L GA++ + EG+TPLIVA G + K L+ELGA+I+A
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS-KYGRSEIVKKLLELGADISARDLTG 167
Query: 85 RGLEPTVRLL 94
E + R+
Sbjct: 168 LTAEASARIF 177
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------Y 80
V + L GA + DK G PL AC G VA+ L++ GA +N +
Sbjct: 57 VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKFTPLH 115
Query: 81 RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 116
A +G +LLL GA+ +N D +T L + +
Sbjct: 116 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 36.2 bits (82), Expect = 0.039, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------Y 80
V + L GA + DK G PL AC G VA+ L++ GA +N +
Sbjct: 55 VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKFTPLH 113
Query: 81 RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 116
A +G +LLL GA+ +N D +T L + +
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------Y 80
V + L GA + DK G PL AC G VA+ L++ GA +N +
Sbjct: 59 VSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVADLWKFTPLH 117
Query: 81 RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR 116
A +G +LLL GA+ +N D +T L + +
Sbjct: 118 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA 67
MN + Q+K L+ AG VD L GA+++ ++ +TPL+ A ++ L
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL-EAV 60
Query: 68 KTLIELGANIN---------AYRPAKRGLEPTVRLLLSCG 98
K LI+ GA ++ + AK+G V+ LLS G
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKI 488
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 27 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 21 LYQWVIAGDVDAIRALRSQGASL----------EWMDKEGKTPLIVACMDSGLINVAKTL 70
+ + G V A++ L +GA++ E + K G T L+ A + G + V K L
Sbjct: 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA-EKGHVEVLKIL 187
Query: 71 I-ELGANINAYRPAKRG-------------LEPTVRLLLSCGANALVRNDDCHTALGVAR 116
+ E+GA++NA R +E LLL GA+ VR + T L +A
Sbjct: 188 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247
Query: 117 IKGHINVVRAI--ESHI 131
K H+ +V+ + + HI
Sbjct: 248 EKKHLGLVQRLLEQEHI 264
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 26 IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKR 85
IAG V ++ S+GA + D G T + A + G + K L + GAN+N R K
Sbjct: 101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV-YGKVKALKFLYKRGANVNLRRKTKE 159
Query: 86 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
E L GA TAL A KGH+ V++ +
Sbjct: 160 DQER----LRKGGA----------TALMDAAEKGHVEVLKIL 187
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 21/111 (18%)
Query: 54 LIVACMDSGLINVAKTLIELGANIN----------AYRPAKRGLEPTVRLLLSCGANALV 103
L++ + + +++ + L+E GAN+N + + E V LLL GA+ ++
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 104 RNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 149
R + T +A I G + +++ S + C F G+ +F+EA
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 132
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 35.8 bits (81), Expect = 0.061, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495
+C +C + V VPCGH+ C C ++ CP+CR + +R +
Sbjct: 15 TCKVCLDRAVSIVFVPCGHLV-CAECAPGLQL----CPICRAPVRSRVRTF 60
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
C IC + + VPCGH+ C C + CP+C T I
Sbjct: 28 CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVI 66
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY------- 80
G+++ +R L GA + KE ++ L +A G ++ L+E +IN Y
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIYDWNGGTP 105
Query: 81 -RPAKRGLEPT-VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 132
A RG V LL+ GA+ D +T + +A G+ V + IE+HI
Sbjct: 106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 35.4 bits (80), Expect = 0.071, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKI 488
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 30 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 72
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
C IC + + VPCGH+ C C + CP+C T I
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVI 65
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 35.0 bits (79), Expect = 0.084, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
+ LL+ I GD+ ++ L G+ D G TPL AC + G + V + L++ A +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC-NHGHLKVVELLLQHKALV 69
Query: 78 NA---------YRPAKRGLEPTVRLLLSCGAN 100
N + AK G V+LLLS GA+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 35.0 bits (79), Expect = 0.086, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488
C IC + + VPCGH+ C C + CP+C T I
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVI 65
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 489
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 335 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 489
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 335 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 489
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 337 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 489
C IC E + PCGH+ C SCL+ + +G CP CR +I
Sbjct: 337 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 35.0 bits (79), Expect = 0.098, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKI 488
C IC E + PCGH+ C SCL+ + G CP CR +I
Sbjct: 29 CKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEI 71
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-----RP 82
G+++ +R L GA + KE ++ L +A G ++ L+E +IN Y P
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLAST-GGYTDIVGLLLERDVDINIYDWNGGTP 105
Query: 83 AKRGLEPT----VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 132
+ V LL+ GA+ D +T + +A G+ V + IE+HI
Sbjct: 106 LLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKIN 489
C IC E + PCGH+ C SCL+ + G CP CR +I
Sbjct: 341 CKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 27/137 (19%)
Query: 21 LYQWVIAGDVDAIRALRSQGASL----------EWMDKEGKTPLIVACMDSGLINVAKTL 70
+ + G V A++ L +GA++ E + K G T L+ A + G + V K L
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA-EKGHVEVLKIL 167
Query: 71 I-ELGANINAYRPAKRG-------------LEPTVRLLLSCGANALVRNDDCHTALGVAR 116
+ E+GA++NA R +E LLL GA+ VR + T L +A
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227
Query: 117 IKGHINVVRAI--ESHI 131
K H+ +V+ + + HI
Sbjct: 228 EKKHLGLVQRLLEQEHI 244
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 26 IAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKR 85
IAG V ++ S+GA + D G T + A + G + K L + GAN+N R K
Sbjct: 81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV-YGKVKALKFLYKRGANVNLRRKTKE 139
Query: 86 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
E L GA AL+ A KGH+ V++ +
Sbjct: 140 DQER----LRKGGATALMD----------AAEKGHVEVLKIL 167
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 21/111 (18%)
Query: 54 LIVACMDSGLINVAKTLIELGANIN----------AYRPAKRGLEPTVRLLLSCGANALV 103
L++ + + +++ + L+E GAN+N + + E V LLL GA+ ++
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 104 RNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEA 149
R + T +A I G + +++ S + C F G+ +F+EA
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF------TAFMEA 112
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE-------- 72
L+ + G D I L GA+ + + PL +AC G V K L++
Sbjct: 90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ-QGHFQVVKCLLDSNAKPNKK 148
Query: 73 -LGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
L N G V LLL GA+ N+ +TAL A I+ H+ VV + H
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLH 207
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKR-- 85
G + L ++G ++ MD+ G TPL+ A + ++ + L+ ++N +
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179
Query: 86 --------GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128
G + LLL GAN +N +AL +A+ + ++ ++ ++
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
G ++ + L GA + D G+TPL +A G + + + L+E GA++NA
Sbjct: 58 GHLEIVEVLLKHGADVNASDSWGRTPLHLAAT-VGHLEIVEVLLEYGADVNA 108
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ G + VR+L++ GA+ +D T L +A +GH+ +V + H
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
G ++ + L GA + MD +G TPL +A G + + + L++ GA++NA
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAA-KWGYLEIVEVLLKHGADVNA 141
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 81 RPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
A+ G + VR+L++ GA+ ++ T L +A GH+ +V + H
Sbjct: 20 EAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 16 SKDEL----LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71
+KDE LY G ++ + L GA + +D G TPL +A G + +A+ L+
Sbjct: 42 AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF-IGHLEIAEVLL 100
Query: 72 ELGANINA 79
+ GA++NA
Sbjct: 101 KHGADVNA 108
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 441 GSSSSCVICWEAPVEGA-------CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490
G+ SC IC + E CGH+ C CL + CP CR KIN
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 56
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
G ++ + L GA + D G+TPL +A G + + + L+E GA++NA
Sbjct: 58 GHLEIVEVLLKHGADVNASDIWGRTPLHLAAT-VGHLEIVEVLLEYGADVNA 108
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130
+ G + VR+L++ GA+ +D T L +A +GH+ +V + H
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
+++ I G ++R L SQG ++ + + +PL AC+ G ++ K L++ GA +N
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQVNGV 121
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ G V LLL GA+ +D AR +GH+ V ++
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSL 176
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN-- 78
L++ + G + ++ L GA + + + TPL AC+ SG + L++ GA++
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV-SGSWDCVNLLLQHGASVQPE 154
Query: 79 ------AYRPAKRGLEPTVRLLLSCGAN 100
+ A+RG V L++ G N
Sbjct: 155 SDLASPIHEAARRGHVECVNSLIAYGGN 182
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87
G V+ + +L + G +++ TPL +AC + V K L+E GA++N + L
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV-KKLLESGADVNQGKGQDSPL 226
Query: 88 EPTVR--------LLLSCGANALVRN 105
VR LL+ GA+ +N
Sbjct: 227 HAVVRTASEELACLLMDFGADTQAKN 252
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78
L+ ++ +D EG TPL +A ++ I +AK LI+ GA+IN
Sbjct: 25 LQDTTYQVDEVDTEGNTPLNIAVHNND-IEIAKALIDRGADIN 66
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA- 79
+++ I G ++R L SQG ++ + + +PL AC+ G ++ K L++ GA +N
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQVNGV 65
Query: 80 --------YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127
+ G V LLL GA+ +D AR +GH+ V ++
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSL 120
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN-- 78
L++ + G + ++ L GA + + + TPL AC+ SG + L++ GA++
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV-SGSWDCVNLLLQHGASVQPE 98
Query: 79 ------AYRPAKRGLEPTVRLLLSCGAN 100
+ A+RG V L++ G N
Sbjct: 99 SDLASPIHEAARRGHVECVNSLIAYGGN 126
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87
G V+ + +L + G +++ TPL +AC + V K L+E GA++N + L
Sbjct: 112 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV-KKLLESGADVNQGKGQDSPL 170
Query: 88 EPTVR--------LLLSCGANALVRNDD 107
R LL+ GA+ +N +
Sbjct: 171 HAVARTASEELACLLMDFGADTQAKNAE 198
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
+++ G++ I L AS D EG TPL +AC D + AK L+ GA+I
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC-DEERVEEAKLLVSQGASI 199
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
AG + ++AL +GA + +++ G TPL A +A L+E GAN +A
Sbjct: 84 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEAT 142
Query: 80 --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 115
+R A +G + +LL A+ +++ + +T L +A
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI 64
V+ + L SQGAS+ +KE KTPL VA GLI
Sbjct: 186 VEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 220
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
+++ G++ I L AS D EG TPL +AC D + AK L+ GA+I
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC-DEERVEEAKLLVSQGASI 198
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
AG + ++AL +GA + +++ G TPL A +A L+E GAN +A
Sbjct: 83 AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEAT 141
Query: 80 --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 115
+R A +G + +LL A+ +++ + +T L +A
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI 64
V+ + L SQGAS+ +KE KTPL VA GLI
Sbjct: 185 VEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 219
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL 95
L QGAS D G +P+ A +G ++ K L+E GA++N P G P + L +
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAAR-TGFLDTLKVLVEHGADVNV--PDGTGALP-IHLAV 109
Query: 96 SCGANALVR----NDDCH-------TALGVARIKGHINVVRAIESHI 131
G A+V D H T L +A +G ++V ++ H+
Sbjct: 110 QEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 442 SSSSCVICWEAPVEGACVPCGHMAGCMSCL-SEIKAKKGDCPVCRTKINQVIRLYT 496
S C IC E VE +PC H C C S ++ CP CR +++ R +T
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSSWTRYHT 68
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----- 82
G V+ +RAL GA+ + G+ P+ V M S VA+ L+ GA N P
Sbjct: 23 GRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA--RVAELLLLHGAEPNCADPATLTR 80
Query: 83 -----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 129
A+ G T+ +L GA VR+ + +A GH +V R + +
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 28 GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA-------- 79
G L G S + K +TPL +A + G N+ + L++ GA++NA
Sbjct: 45 GHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAKDMLKMTA 103
Query: 80 -YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128
+ + + V LL+ GA+ ++ C TA ++ G+ ++ ++
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY--------RPAKRGL 87
L QGAS D G +P+ A +G ++ K L+E GA++NA A R
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAA-RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 120
Query: 88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 132
+V L+ ++ R+ T L +AR +G N++ ++ H+
Sbjct: 121 HSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 165
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 39 QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79
+G++ + D++GKTP+ +A + G I V LI+ GA++ A
Sbjct: 302 KGSNKDKQDEDGKTPIXLAAQE-GRIEVVXYLIQQGASVEA 341
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 36 LRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY--------RPAKRGL 87
L QGAS D G +P+ A +G ++ K L+E GA++NA A R
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAA-RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 118
Query: 88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 132
+V L+ ++ R+ T L +AR +G N++ ++ H+
Sbjct: 119 HSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 163
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 443 SSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 492
+ C IC E P +PC H A C C++ + CP+C+ + V+
Sbjct: 5 AERCPICLEDPSNYSMALPCLH-AFCYVCITRWIRQNPTCPLCKVPVESVV 54
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 445 SCVICWEAPVEGA-------CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490
SC IC + E CGH+ C CL + CP CR KIN
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 63
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 445 SCVICWEAPVEGA-------CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490
SC IC + E CGH+ C CL + CP CR KIN
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 445 SCVICWEAPVEGA-------CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490
SC IC + E CGH+ C CL + CP CR KIN
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 125
>pdb|3H2I|A Chain A, Crystal Structure Of N228w Mutant Of The Rice Cell Wall
Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 35 ALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
ALR+Q + E D +G PL+ G + V + LG + AY P
Sbjct: 90 ALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHP 137
>pdb|3H2G|A Chain A, Crystal Structure Of A Rice Cell Wall Degrading Esterase
Lipa From Xanthomonas Oryzae
pdb|3H2J|A Chain A, Crystal Structure Of The Rice Cell Wall Degrading Esterase
Lipa From Xanthomonas Oryzae
pdb|3H2K|A Chain A, Crystal Structure Of A Ligand-Bound Form Of The Rice Cell
Wall Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 35 ALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
ALR+Q + E D +G PL+ G + V + LG + AY P
Sbjct: 90 ALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHP 137
>pdb|3H2H|A Chain A, Crystal Structure Of G231f Mutant Of The Rice Cell Wall
Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 35 ALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82
ALR+Q + E D +G PL+ G + V + LG + AY P
Sbjct: 90 ALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHP 137
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
+++ G++ + L AS D EG TPL +AC D + AK L+ GA+I
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DEERVEEAKFLVTQGASI 198
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
AG + ++AL +GA + +++ G TPL A +A L+E GAN +A
Sbjct: 83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYDAT 141
Query: 80 --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 115
+R A +G V +LL A+ +++ + +T L +A
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI 77
+++ G++ + L AS D EG TPL +AC D + AK L+ GA+I
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DEERVEEAKFLVTQGASI 198
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA------- 79
AG + ++AL +GA + +++ G TPL A +A L+E GAN +A
Sbjct: 83 AGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYDAT 141
Query: 80 --YRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 115
+R A +G V +LL A+ +++ + +T L +A
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 461 CGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490
CGH+ C CL + CP CR KIN
Sbjct: 40 CGHVF-CSQCLRDSLKNANTCPTCRKKINH 68
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA---------Y 80
V ++ L GA + DK G PL AC G V + L++ GA +NA +
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVTELLLKHGACVNAMDLWQFTPLH 129
Query: 81 RPAKRGLEPTVRLLLSCGANALVRNDDCH 109
A + LLLS GA+ + N CH
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVN--CH 156
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 134 FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV 193
F G L E GP + A P+LM + +V++ G K L+ YP + RAV
Sbjct: 332 FIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPG----KVRAV 387
Query: 194 IAL 196
+
Sbjct: 388 VKF 390
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSC-LSEIKAKKGDCPV 483
GS C IC A E PCGH C +C + I+ CPV
Sbjct: 4 GSKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPV 46
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 22 YQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR 81
Q ++ G L QGAS D G +P+ A +G ++ K L+E GA++N
Sbjct: 46 LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAAR-TGFLDTLKVLVEHGADVNV-- 102
Query: 82 PAKRGLEPTVRLLLSCGANALVR----NDDCH-------TALGVARIKGHINVVRAIESH 130
P G P + L + G A+V D H T L +A +G ++V ++ H
Sbjct: 103 PDGTGALP-IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Query: 131 IC 132
+
Sbjct: 162 MV 163
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG---DCPVCRTKINQ 490
C IC + + + CGH C+ C+++I CP+C+T + +
Sbjct: 23 CPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 445 SCVICWEAPVEGACVPCGHMAGCMSCLS------EIKAKKGDCPVCR 485
+C IC E E C H + C +C++ KG+CPVCR
Sbjct: 21 TCPICLELLKEPVSADCNH-SFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 28.5 bits (62), Expect = 8.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG--DCPVCRTKINQ 490
C IC E E C H+ L + KKG CP+C+ I +
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,905,280
Number of Sequences: 62578
Number of extensions: 611596
Number of successful extensions: 1503
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1245
Number of HSP's gapped (non-prelim): 249
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)