Query 010920
Match_columns 497
No_of_seqs 305 out of 4254
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02791 ankyrin-like protein; 100.0 7.5E-30 1.6E-34 244.3 20.1 214 4-231 17-243 (284)
2 KOG4412 26S proteasome regulat 100.0 1.6E-30 3.5E-35 219.2 10.9 157 14-174 35-202 (226)
3 PHA02946 ankyin-like protein; 100.0 5.4E-29 1.2E-33 255.2 22.2 228 12-245 67-332 (446)
4 PHA02874 ankyrin repeat protei 100.0 1.4E-28 3.1E-33 253.4 23.6 216 13-232 31-279 (434)
5 PHA02878 ankyrin repeat protei 100.0 5.8E-28 1.3E-32 251.8 22.3 226 14-245 34-309 (477)
6 PHA02716 CPXV016; CPX019; EVM0 100.0 1.1E-27 2.3E-32 253.4 22.4 60 87-148 296-357 (764)
7 PHA03095 ankyrin-like protein; 100.0 1.8E-27 4E-32 248.2 23.6 219 12-233 42-282 (471)
8 PHA03100 ankyrin repeat protei 100.0 2.1E-27 4.4E-32 248.5 22.3 216 13-232 31-274 (480)
9 PHA03100 ankyrin repeat protei 100.0 2.1E-27 4.5E-32 248.5 21.8 222 13-238 64-313 (480)
10 PHA02875 ankyrin repeat protei 100.0 3.7E-27 8.1E-32 241.6 23.0 216 17-236 2-230 (413)
11 PHA03095 ankyrin-like protein; 100.0 7E-27 1.5E-31 243.9 24.4 223 13-238 79-320 (471)
12 KOG4412 26S proteasome regulat 100.0 8.4E-28 1.8E-32 202.8 12.8 195 16-215 2-211 (226)
13 PHA02791 ankyrin-like protein; 100.0 8.1E-27 1.8E-31 223.4 20.8 201 27-234 9-220 (284)
14 PHA02716 CPXV016; CPX019; EVM0 100.0 9.5E-27 2.1E-31 246.1 22.8 157 10-169 205-428 (764)
15 PHA02874 ankyrin repeat protei 99.9 3.8E-26 8.2E-31 235.4 22.8 211 13-229 64-310 (434)
16 PHA02946 ankyin-like protein; 99.9 5.5E-26 1.2E-30 233.0 22.5 212 16-232 36-267 (446)
17 PHA02876 ankyrin repeat protei 99.9 4.3E-26 9.4E-31 247.9 22.7 218 13-234 174-401 (682)
18 PHA02875 ankyrin repeat protei 99.9 4.5E-26 9.8E-31 233.6 20.1 202 12-217 30-247 (413)
19 PHA02989 ankyrin repeat protei 99.9 8.5E-26 1.8E-30 236.3 22.2 227 15-245 33-298 (494)
20 KOG0509 Ankyrin repeat and DHH 99.9 1.2E-26 2.6E-31 231.5 14.4 198 17-218 44-255 (600)
21 PHA02876 ankyrin repeat protei 99.9 1.9E-25 4.1E-30 242.8 22.5 215 13-232 269-498 (682)
22 PHA02730 ankyrin-like protein; 99.9 2.4E-25 5.2E-30 231.2 21.5 218 12-233 36-487 (672)
23 KOG0509 Ankyrin repeat and DHH 99.9 1.6E-26 3.4E-31 230.7 11.5 173 11-187 72-255 (600)
24 KOG0510 Ankyrin repeat protein 99.9 1.7E-25 3.7E-30 227.2 18.6 217 14-234 118-403 (929)
25 KOG0508 Ankyrin repeat protein 99.9 3.8E-26 8.3E-31 218.7 12.1 175 14-193 39-231 (615)
26 PHA02859 ankyrin repeat protei 99.9 5.3E-25 1.1E-29 203.3 17.5 155 15-174 19-189 (209)
27 PHA02798 ankyrin-like protein; 99.9 1.4E-24 3E-29 226.9 22.2 228 15-245 34-300 (489)
28 PHA02989 ankyrin repeat protei 99.9 2.4E-24 5.2E-29 225.4 23.4 217 16-236 68-317 (494)
29 PHA02917 ankyrin-like protein; 99.9 2.1E-24 4.6E-29 229.7 20.9 218 12-233 27-301 (661)
30 PHA02795 ankyrin-like protein; 99.9 1.8E-24 3.8E-29 214.9 17.0 156 13-174 112-292 (437)
31 PHA02798 ankyrin-like protein; 99.9 1.2E-23 2.7E-28 219.7 21.9 224 13-239 67-322 (489)
32 PHA02878 ankyrin repeat protei 99.9 5.2E-24 1.1E-28 222.1 17.7 211 12-227 65-320 (477)
33 KOG0508 Ankyrin repeat protein 99.9 9.6E-24 2.1E-28 202.4 14.1 149 14-167 81-238 (615)
34 PHA02795 ankyrin-like protein; 99.9 1.4E-22 3E-27 201.5 18.9 157 23-183 83-260 (437)
35 PHA02859 ankyrin repeat protei 99.9 1.9E-22 4.2E-27 186.2 16.6 142 11-155 45-203 (209)
36 KOG0510 Ankyrin repeat protein 99.9 8.3E-23 1.8E-27 207.9 15.0 212 14-229 85-327 (929)
37 PHA02730 ankyrin-like protein; 99.9 7.9E-22 1.7E-26 205.1 20.3 210 25-238 210-528 (672)
38 KOG0514 Ankyrin repeat protein 99.9 1.8E-22 3.9E-27 188.0 10.1 159 4-166 255-429 (452)
39 KOG4177 Ankyrin [Cell wall/mem 99.9 3.4E-22 7.4E-27 215.5 13.2 171 16-190 439-619 (1143)
40 KOG4177 Ankyrin [Cell wall/mem 99.9 1.3E-22 2.8E-27 218.7 9.8 218 13-233 403-631 (1143)
41 PHA02743 Viral ankyrin protein 99.9 3.8E-21 8.2E-26 171.0 15.4 142 9-175 12-159 (166)
42 PLN03192 Voltage-dependent pot 99.9 4.1E-21 8.8E-26 212.0 17.4 156 13-174 521-685 (823)
43 PHA02741 hypothetical protein; 99.9 4.3E-21 9.3E-26 171.3 14.0 133 13-169 17-157 (169)
44 KOG0502 Integral membrane anky 99.9 1.3E-21 2.7E-26 170.4 8.1 149 12-167 124-281 (296)
45 PHA02917 ankyrin-like protein; 99.8 3.1E-20 6.8E-25 197.9 18.9 196 30-229 12-252 (661)
46 PHA02792 ankyrin-like protein; 99.8 1.3E-19 2.8E-24 186.8 21.2 218 13-235 171-480 (631)
47 PHA02736 Viral ankyrin protein 99.8 1.1E-20 2.3E-25 166.4 10.1 132 12-170 12-152 (154)
48 KOG0507 CASK-interacting adapt 99.8 1.5E-20 3.3E-25 190.1 12.2 213 10-225 42-271 (854)
49 PHA02792 ankyrin-like protein; 99.8 9.5E-20 2.1E-24 187.7 17.3 216 13-233 67-435 (631)
50 KOG0505 Myosin phosphatase, re 99.8 1.6E-20 3.4E-25 184.0 9.9 168 14-185 70-272 (527)
51 TIGR00870 trp transient-recept 99.8 9.2E-20 2E-24 200.1 16.0 212 15-229 15-278 (743)
52 PLN03192 Voltage-dependent pot 99.8 8.3E-20 1.8E-24 201.6 15.7 138 11-152 552-697 (823)
53 KOG0514 Ankyrin repeat protein 99.8 8.1E-20 1.8E-24 170.4 9.5 151 42-227 260-426 (452)
54 PHA02884 ankyrin repeat protei 99.8 1E-18 2.2E-23 167.4 15.5 124 14-165 29-158 (300)
55 KOG0502 Integral membrane anky 99.8 5.4E-20 1.2E-24 160.3 4.5 155 14-174 93-256 (296)
56 KOG0195 Integrin-linked kinase 99.8 9.5E-19 2.1E-23 158.4 9.6 139 9-175 26-164 (448)
57 KOG0512 Fetal globin-inducing 99.7 1.8E-17 4E-22 139.4 10.9 139 17-182 63-203 (228)
58 PHA02743 Viral ankyrin protein 99.7 4E-17 8.7E-22 145.1 12.0 107 12-144 52-162 (166)
59 KOG0507 CASK-interacting adapt 99.7 8E-17 1.7E-21 163.4 15.0 210 18-232 4-245 (854)
60 KOG4369 RTK signaling protein 99.7 2.5E-17 5.4E-22 171.7 11.1 216 14-231 754-982 (2131)
61 PHA02741 hypothetical protein; 99.7 1.7E-16 3.6E-21 141.7 15.0 134 43-229 14-153 (169)
62 KOG4369 RTK signaling protein 99.7 7.1E-18 1.5E-22 175.6 6.9 223 11-237 784-1056(2131)
63 PF12796 Ank_2: Ankyrin repeat 99.7 1E-16 2.2E-21 127.0 11.2 86 21-135 1-86 (89)
64 cd00204 ANK ankyrin repeats; 99.7 3.7E-16 8E-21 131.4 15.0 124 13-164 3-126 (126)
65 TIGR00870 trp transient-recept 99.7 1.1E-16 2.4E-21 175.8 13.7 177 12-195 47-275 (743)
66 KOG0512 Fetal globin-inducing 99.7 1E-16 2.2E-21 134.9 9.8 117 12-156 92-210 (228)
67 PHA02736 Viral ankyrin protein 99.7 2.9E-16 6.4E-21 138.0 8.9 100 12-135 50-153 (154)
68 PHA02884 ankyrin repeat protei 99.7 1.6E-15 3.5E-20 145.5 14.3 148 42-215 24-172 (300)
69 KOG0195 Integrin-linked kinase 99.6 1.1E-16 2.4E-21 145.1 4.7 134 24-185 7-141 (448)
70 KOG0505 Myosin phosphatase, re 99.6 1.6E-15 3.6E-20 149.1 12.0 197 20-220 43-276 (527)
71 KOG3676 Ca2+-permeable cation 99.6 2.4E-15 5.2E-20 154.8 11.3 150 13-166 139-330 (782)
72 PF12796 Ank_2: Ankyrin repeat 99.6 6.5E-15 1.4E-19 116.6 10.4 88 54-173 1-88 (89)
73 COG0666 Arp FOG: Ankyrin repea 99.6 5.1E-14 1.1E-18 131.3 13.5 132 13-167 69-203 (235)
74 KOG4214 Myotrophin and similar 99.5 1.7E-14 3.8E-19 108.7 7.7 103 18-148 3-105 (117)
75 cd00204 ANK ankyrin repeats; 99.5 1.3E-12 2.7E-17 109.7 15.0 124 45-227 2-125 (126)
76 KOG1710 MYND Zn-finger and ank 99.5 4.2E-13 9.1E-18 122.0 10.9 124 16-166 11-134 (396)
77 PF13637 Ank_4: Ankyrin repeat 99.5 1.8E-13 3.8E-18 97.2 6.5 54 17-71 1-54 (54)
78 PTZ00322 6-phosphofructo-2-kin 99.4 5.6E-13 1.2E-17 143.4 12.3 103 19-148 84-193 (664)
79 KOG4172 Predicted E3 ubiquitin 99.4 1.6E-14 3.4E-19 95.9 -1.6 53 444-496 8-61 (62)
80 KOG4214 Myotrophin and similar 99.4 7.8E-13 1.7E-17 99.8 6.8 83 88-174 15-97 (117)
81 KOG3676 Ca2+-permeable cation 99.4 3.4E-12 7.3E-17 131.9 12.6 193 18-231 102-331 (782)
82 PF13857 Ank_5: Ankyrin repeat 99.4 5.4E-13 1.2E-17 95.2 4.6 55 94-151 1-56 (56)
83 PF13857 Ank_5: Ankyrin repeat 99.3 1.4E-12 3.1E-17 93.0 4.9 55 36-115 1-56 (56)
84 KOG1710 MYND Zn-finger and ank 99.3 4.6E-12 9.9E-17 115.3 8.5 101 4-129 31-133 (396)
85 PTZ00322 6-phosphofructo-2-kin 99.3 1.6E-11 3.5E-16 132.2 11.9 77 87-166 94-170 (664)
86 PF13637 Ank_4: Ankyrin repeat 99.3 8.1E-12 1.7E-16 88.6 6.3 54 108-164 1-54 (54)
87 KOG0515 p53-interacting protei 99.3 1.8E-11 3.9E-16 119.9 10.0 122 19-167 552-675 (752)
88 PF13920 zf-C3HC4_3: Zinc fing 99.3 4E-12 8.8E-17 88.2 3.5 48 443-490 2-49 (50)
89 COG0666 Arp FOG: Ankyrin repea 99.2 6.8E-10 1.5E-14 103.3 15.4 128 44-230 67-202 (235)
90 KOG4275 Predicted E3 ubiquitin 99.1 1E-11 2.2E-16 112.8 -1.2 53 441-497 298-350 (350)
91 KOG4265 Predicted E3 ubiquitin 99.1 5.6E-11 1.2E-15 112.4 2.9 58 439-496 286-343 (349)
92 KOG0515 p53-interacting protei 99.0 3.8E-10 8.3E-15 110.7 7.4 87 83-172 558-644 (752)
93 PLN03208 E3 ubiquitin-protein 98.9 1.3E-09 2.8E-14 95.5 5.2 55 440-495 15-87 (193)
94 KOG0823 Predicted E3 ubiquitin 98.9 7.7E-10 1.7E-14 98.6 3.7 55 440-495 44-103 (230)
95 KOG0320 Predicted E3 ubiquitin 98.9 4.3E-09 9.3E-14 89.5 7.9 54 441-495 129-186 (187)
96 KOG0317 Predicted E3 ubiquitin 98.8 2.7E-09 5.9E-14 97.9 3.6 50 441-491 237-286 (293)
97 PHA02929 N1R/p28-like protein; 98.8 6.1E-09 1.3E-13 95.7 4.3 54 442-496 173-234 (238)
98 PF13923 zf-C3HC4_2: Zinc fing 98.8 5.5E-09 1.2E-13 68.2 2.7 38 446-484 1-39 (39)
99 KOG0506 Glutaminase (contains 98.7 1.1E-08 2.4E-13 99.4 5.3 96 12-131 501-596 (622)
100 PF13606 Ank_3: Ankyrin repeat 98.7 1.5E-08 3.3E-13 61.7 3.9 28 17-44 2-29 (30)
101 PF13639 zf-RING_2: Ring finge 98.7 6.2E-09 1.3E-13 70.0 2.2 40 445-485 2-44 (44)
102 PF00023 Ank: Ankyrin repeat H 98.7 2E-08 4.4E-13 62.9 4.4 32 16-47 1-32 (33)
103 KOG1571 Predicted E3 ubiquitin 98.7 4.3E-09 9.4E-14 99.8 1.7 56 437-496 299-354 (355)
104 PF13606 Ank_3: Ankyrin repeat 98.7 2.6E-08 5.6E-13 60.7 4.0 30 49-79 1-30 (30)
105 KOG0818 GTPase-activating prot 98.7 8.7E-08 1.9E-12 93.7 9.3 86 20-130 136-222 (669)
106 KOG0783 Uncharacterized conser 98.7 1.3E-08 2.8E-13 105.0 3.7 90 32-148 32-124 (1267)
107 PF15227 zf-C3HC4_4: zinc fing 98.6 2E-08 4.4E-13 66.3 2.9 38 446-484 1-42 (42)
108 PF00023 Ank: Ankyrin repeat H 98.6 7.8E-08 1.7E-12 60.2 4.2 32 49-81 1-32 (33)
109 KOG0818 GTPase-activating prot 98.5 4.6E-07 1E-11 88.8 9.3 81 83-166 141-222 (669)
110 KOG0705 GTPase-activating prot 98.5 4.2E-07 9.1E-12 90.7 8.2 91 20-135 627-721 (749)
111 KOG0782 Predicted diacylglycer 98.4 7.4E-07 1.6E-11 88.6 9.1 121 21-167 870-990 (1004)
112 PHA02926 zinc finger-like prot 98.4 8.5E-08 1.8E-12 84.9 2.1 53 440-493 167-234 (242)
113 PF00097 zf-C3HC4: Zinc finger 98.4 2E-07 4.4E-12 61.6 2.7 38 446-484 1-41 (41)
114 smart00504 Ubox Modified RING 98.4 1.8E-07 3.9E-12 68.4 2.7 44 444-488 2-45 (63)
115 KOG0783 Uncharacterized conser 98.4 2.5E-07 5.5E-12 95.8 4.5 67 11-78 46-113 (1267)
116 PF14634 zf-RING_5: zinc-RING 98.4 2.6E-07 5.5E-12 62.0 2.9 41 445-486 1-44 (44)
117 KOG0506 Glutaminase (contains 98.4 3.8E-07 8.3E-12 89.0 5.1 94 47-168 503-597 (622)
118 KOG0705 GTPase-activating prot 98.3 1.2E-06 2.5E-11 87.6 7.3 81 87-170 636-720 (749)
119 KOG0522 Ankyrin repeat protein 98.3 1.3E-06 2.9E-11 86.7 7.7 87 19-130 22-110 (560)
120 cd00162 RING RING-finger (Real 98.3 4E-07 8.7E-12 61.3 2.9 43 445-488 1-45 (45)
121 KOG0522 Ankyrin repeat protein 98.3 1.4E-06 3.1E-11 86.6 7.2 65 99-166 46-110 (560)
122 KOG0782 Predicted diacylglycer 98.3 1.3E-06 2.9E-11 86.8 7.0 94 12-130 894-989 (1004)
123 TIGR00599 rad18 DNA repair pro 98.3 4.9E-07 1.1E-11 89.4 3.6 51 439-490 22-72 (397)
124 COG5574 PEX10 RING-finger-cont 98.2 4.5E-07 9.9E-12 82.4 2.2 46 442-488 214-261 (271)
125 smart00184 RING Ring finger. E 98.2 9.2E-07 2E-11 57.4 3.1 38 446-484 1-39 (39)
126 PF13445 zf-RING_UBOX: RING-ty 98.2 6.8E-07 1.5E-11 58.9 2.4 35 446-482 1-43 (43)
127 KOG2164 Predicted E3 ubiquitin 98.2 1E-06 2.3E-11 87.4 3.1 52 443-495 186-244 (513)
128 KOG3609 Receptor-activated Ca2 98.1 1.3E-05 2.9E-10 84.3 9.0 125 14-171 22-158 (822)
129 KOG0287 Postreplication repair 98.1 1.5E-06 3.2E-11 81.3 1.5 49 441-490 21-69 (442)
130 KOG0978 E3 ubiquitin ligase in 98.0 9E-07 1.9E-11 92.3 -0.2 53 442-495 642-697 (698)
131 PF12678 zf-rbx1: RING-H2 zinc 98.0 4.6E-06 1E-10 62.5 3.7 40 445-485 21-73 (73)
132 COG5432 RAD18 RING-finger-cont 98.0 2.8E-06 6E-11 77.8 2.3 49 440-489 22-70 (391)
133 KOG1100 Predicted E3 ubiquitin 98.0 2.2E-06 4.8E-11 77.7 0.8 48 445-496 160-207 (207)
134 KOG0521 Putative GTPase activa 97.9 1.1E-05 2.5E-10 87.1 4.9 105 32-164 636-742 (785)
135 KOG0520 Uncharacterized conser 97.9 1.3E-05 2.8E-10 86.2 5.0 130 11-166 568-702 (975)
136 COG5540 RING-finger-containing 97.9 8.9E-06 1.9E-10 75.1 2.9 50 439-489 319-372 (374)
137 PF04564 U-box: U-box domain; 97.8 1.7E-05 3.6E-10 59.6 3.4 48 442-490 3-51 (73)
138 KOG2384 Major histocompatibili 97.8 3.6E-05 7.8E-10 66.8 5.6 68 98-168 2-70 (223)
139 KOG2384 Major histocompatibili 97.8 0.00011 2.5E-09 63.8 8.5 72 40-135 2-73 (223)
140 KOG0521 Putative GTPase activa 97.8 2.6E-05 5.6E-10 84.4 5.0 88 105-195 653-740 (785)
141 KOG0511 Ankyrin repeat protein 97.7 5.3E-05 1.1E-09 72.4 6.1 57 18-75 37-93 (516)
142 KOG4628 Predicted E3 ubiquitin 97.7 1.8E-05 4E-10 76.3 2.8 46 444-490 230-279 (348)
143 COG5243 HRD1 HRD ubiquitin lig 97.7 2E-05 4.4E-10 74.7 2.2 47 441-488 285-344 (491)
144 KOG3609 Receptor-activated Ca2 97.6 9E-05 1.9E-09 78.3 5.7 104 10-135 55-158 (822)
145 KOG1785 Tyrosine kinase negati 97.6 2.8E-05 6.1E-10 74.4 1.5 50 444-494 370-421 (563)
146 KOG0824 Predicted E3 ubiquitin 97.5 3.5E-05 7.6E-10 71.5 1.4 49 443-492 7-56 (324)
147 KOG4692 Predicted E3 ubiquitin 97.4 7.3E-05 1.6E-09 70.5 2.6 49 441-490 420-468 (489)
148 PF14835 zf-RING_6: zf-RING of 97.3 4.1E-05 9E-10 54.1 -0.2 44 442-488 6-50 (65)
149 KOG2177 Predicted E3 ubiquitin 97.3 8.8E-05 1.9E-09 73.4 1.1 46 440-486 10-55 (386)
150 KOG0511 Ankyrin repeat protein 97.2 0.0006 1.3E-08 65.4 5.9 69 83-155 44-112 (516)
151 COG5236 Uncharacterized conser 97.2 0.00033 7.2E-09 66.0 3.8 50 440-490 58-109 (493)
152 KOG0802 E3 ubiquitin ligase [P 97.1 0.00016 3.5E-09 76.4 1.5 48 440-488 288-340 (543)
153 KOG4159 Predicted E3 ubiquitin 97.1 0.00024 5.2E-09 70.6 1.9 49 441-490 82-130 (398)
154 KOG0520 Uncharacterized conser 97.0 0.00093 2E-08 72.3 6.1 134 43-230 567-702 (975)
155 PF14447 Prok-RING_4: Prokaryo 97.0 0.00019 4E-09 49.1 0.4 45 443-490 7-51 (55)
156 KOG1039 Predicted E3 ubiquitin 97.0 0.0003 6.6E-09 68.4 1.6 51 441-492 159-224 (344)
157 PF12861 zf-Apc11: Anaphase-pr 97.0 0.00072 1.6E-08 51.2 3.2 33 456-489 47-82 (85)
158 smart00248 ANK ankyrin repeats 96.9 0.0019 4.1E-08 37.7 3.9 27 17-43 2-28 (30)
159 KOG3039 Uncharacterized conser 96.8 0.0027 5.9E-08 57.3 6.1 49 441-490 219-271 (303)
160 KOG0828 Predicted E3 ubiquitin 96.8 0.00053 1.1E-08 67.8 1.2 49 440-489 568-634 (636)
161 KOG2879 Predicted E3 ubiquitin 96.7 0.0015 3.3E-08 60.0 3.8 50 440-490 236-288 (298)
162 KOG0311 Predicted E3 ubiquitin 96.7 0.00018 3.9E-09 68.3 -2.6 53 439-492 39-93 (381)
163 smart00248 ANK ankyrin repeats 96.3 0.0069 1.5E-07 35.1 3.9 29 107-135 1-29 (30)
164 COG5152 Uncharacterized conser 96.3 0.0016 3.5E-08 56.6 1.1 49 443-492 196-244 (259)
165 KOG1813 Predicted E3 ubiquitin 96.1 0.0018 3.9E-08 60.2 0.8 49 444-493 242-290 (313)
166 PF07800 DUF1644: Protein of u 96.1 0.0057 1.2E-07 51.8 3.6 52 443-494 2-96 (162)
167 TIGR00570 cdk7 CDK-activating 96.0 0.0039 8.5E-08 59.5 2.2 29 460-489 25-54 (309)
168 KOG3002 Zn finger protein [Gen 95.8 0.005 1.1E-07 59.1 2.0 46 441-491 46-93 (299)
169 KOG2505 Ankyrin repeat protein 95.8 0.0063 1.4E-07 60.7 2.7 41 18-58 431-471 (591)
170 PF14570 zf-RING_4: RING/Ubox 95.7 0.006 1.3E-07 40.9 1.6 42 446-488 1-47 (48)
171 KOG1734 Predicted RING-contain 95.7 0.0049 1.1E-07 56.5 1.3 48 442-490 223-282 (328)
172 KOG0804 Cytoplasmic Zn-finger 95.6 0.0094 2E-07 58.8 3.1 41 443-486 175-219 (493)
173 PF04641 Rtf2: Rtf2 RING-finge 95.4 0.015 3.3E-07 55.3 4.0 49 440-490 110-162 (260)
174 KOG2505 Ankyrin repeat protein 95.4 0.03 6.5E-07 56.1 5.9 71 88-164 404-480 (591)
175 smart00744 RINGv The RING-vari 95.3 0.018 3.8E-07 39.3 2.8 40 445-485 1-49 (49)
176 PF06128 Shigella_OspC: Shigel 95.2 0.12 2.6E-06 46.7 8.4 47 122-169 231-279 (284)
177 KOG0297 TNF receptor-associate 95.1 0.008 1.7E-07 60.7 1.1 51 440-491 18-69 (391)
178 COG5175 MOT2 Transcriptional r 94.6 0.023 5E-07 53.8 2.4 48 441-489 12-64 (480)
179 KOG0826 Predicted E3 ubiquitin 94.5 0.023 4.9E-07 53.9 2.3 53 442-495 299-354 (357)
180 KOG1814 Predicted E3 ubiquitin 94.5 0.02 4.3E-07 56.0 1.9 43 442-485 183-236 (445)
181 KOG0825 PHD Zn-finger protein 94.3 0.011 2.5E-07 61.8 -0.2 52 442-494 122-176 (1134)
182 PF03854 zf-P11: P-11 zinc fin 94.0 0.047 1E-06 36.0 2.3 46 445-492 4-49 (50)
183 PF11789 zf-Nse: Zinc-finger o 94.0 0.052 1.1E-06 38.3 2.7 41 442-483 10-53 (57)
184 KOG1001 Helicase-like transcri 94.0 0.026 5.6E-07 60.7 1.7 44 444-489 455-500 (674)
185 KOG2660 Locus-specific chromos 93.8 0.015 3.3E-07 55.2 -0.3 55 440-495 12-67 (331)
186 KOG1002 Nucleotide excision re 93.8 0.024 5.2E-07 56.9 0.9 48 440-488 533-585 (791)
187 COG5220 TFB3 Cdk activating ki 93.2 0.033 7.1E-07 50.2 0.8 45 441-486 8-61 (314)
188 PF11793 FANCL_C: FANCL C-term 93.2 0.025 5.5E-07 41.9 0.0 45 444-489 3-66 (70)
189 PF06128 Shigella_OspC: Shigel 92.7 0.94 2E-05 41.1 9.1 48 87-134 229-280 (284)
190 KOG2932 E3 ubiquitin ligase in 92.2 0.031 6.8E-07 52.3 -0.8 32 458-492 106-137 (389)
191 COG5194 APC11 Component of SCF 91.8 0.18 3.9E-06 37.3 2.9 31 457-488 50-80 (88)
192 COG5219 Uncharacterized conser 91.3 0.099 2.1E-06 56.3 1.6 48 441-489 1467-1523(1525)
193 PF04710 Pellino: Pellino; In 91.2 0.06 1.3E-06 52.6 0.0 54 442-496 327-411 (416)
194 KOG2817 Predicted E3 ubiquitin 91.2 0.13 2.7E-06 50.5 2.1 54 442-496 333-394 (394)
195 KOG1428 Inhibitor of type V ad 90.9 0.13 2.9E-06 57.6 2.1 52 439-491 3482-3546(3738)
196 PF05290 Baculo_IE-1: Baculovi 90.7 0.15 3.3E-06 41.9 1.8 48 443-491 80-134 (140)
197 PF05883 Baculo_RING: Baculovi 90.4 0.13 2.8E-06 42.7 1.2 33 443-476 26-67 (134)
198 PF03158 DUF249: Multigene fam 88.8 3.2 6.9E-05 36.7 8.5 130 20-165 49-191 (192)
199 KOG3842 Adaptor protein Pellin 88.7 0.35 7.6E-06 45.6 2.9 50 440-490 338-415 (429)
200 KOG1493 Anaphase-promoting com 88.6 0.15 3.3E-06 37.3 0.3 28 460-488 50-80 (84)
201 KOG3579 Predicted E3 ubiquitin 88.2 1.5 3.1E-05 41.0 6.3 32 444-476 269-304 (352)
202 PF10272 Tmpp129: Putative tra 87.1 0.7 1.5E-05 45.6 4.0 48 442-489 270-351 (358)
203 KOG4445 Uncharacterized conser 84.5 0.47 1E-05 44.6 1.3 47 442-489 114-186 (368)
204 PF10367 Vps39_2: Vacuolar sor 83.2 0.51 1.1E-05 38.1 0.9 32 440-472 75-108 (109)
205 KOG2930 SCF ubiquitin ligase, 83.1 0.68 1.5E-05 36.2 1.4 29 458-487 78-106 (114)
206 KOG2113 Predicted RNA binding 83.1 4.7 0.0001 38.3 7.1 54 439-494 339-392 (394)
207 PHA02862 5L protein; Provision 82.8 1.3 2.8E-05 37.1 3.1 44 444-488 3-52 (156)
208 PF11929 DUF3447: Domain of un 82.8 2.7 5.9E-05 31.5 4.7 47 19-73 8-54 (76)
209 COG5222 Uncharacterized conser 82.0 0.69 1.5E-05 43.3 1.3 42 444-486 275-318 (427)
210 KOG4218 Nuclear hormone recept 81.5 0.98 2.1E-05 43.3 2.1 43 440-486 12-75 (475)
211 PHA03096 p28-like protein; Pro 80.7 0.99 2.1E-05 43.3 1.9 44 444-488 179-236 (284)
212 KOG3161 Predicted E3 ubiquitin 79.7 0.62 1.3E-05 48.4 0.2 37 443-482 11-51 (861)
213 PHA02825 LAP/PHD finger-like p 74.9 3 6.5E-05 35.8 3.0 46 442-488 7-58 (162)
214 KOG4362 Transcriptional regula 72.5 0.98 2.1E-05 48.0 -0.6 49 440-489 18-69 (684)
215 PF02891 zf-MIZ: MIZ/SP-RING z 72.0 2.7 5.8E-05 28.7 1.7 42 445-487 4-50 (50)
216 PF04216 FdhE: Protein involve 71.2 0.95 2E-05 43.9 -1.0 51 442-493 171-226 (290)
217 KOG1941 Acetylcholine receptor 71.1 1.6 3.4E-05 42.7 0.5 47 442-489 364-416 (518)
218 PF11929 DUF3447: Domain of un 69.1 6.8 0.00015 29.3 3.5 47 110-166 8-54 (76)
219 KOG0298 DEAD box-containing he 66.6 1.5 3.3E-05 49.5 -0.7 48 440-488 1150-1198(1394)
220 PRK03564 formate dehydrogenase 66.6 2.6 5.6E-05 40.9 0.9 45 442-486 186-234 (309)
221 KOG4185 Predicted E3 ubiquitin 66.4 3.5 7.6E-05 40.1 1.9 29 459-488 25-54 (296)
222 TIGR01562 FdhE formate dehydro 64.3 2 4.3E-05 41.7 -0.3 46 442-487 183-233 (305)
223 KOG2068 MOT2 transcription fac 63.1 4.7 0.0001 39.0 1.9 46 444-490 250-299 (327)
224 KOG1940 Zn-finger protein [Gen 61.9 2.4 5.2E-05 40.2 -0.2 46 445-492 160-209 (276)
225 COG5109 Uncharacterized conser 61.1 4.6 0.0001 38.4 1.5 53 443-496 336-396 (396)
226 KOG1952 Transcription factor N 60.7 37 0.00081 37.2 8.1 45 441-486 189-244 (950)
227 PF03158 DUF249: Multigene fam 60.2 20 0.00043 31.8 5.1 46 20-72 146-191 (192)
228 PF12906 RINGv: RING-variant d 59.8 5.7 0.00012 26.7 1.4 39 446-484 1-47 (47)
229 PF13240 zinc_ribbon_2: zinc-r 58.8 1.6 3.4E-05 24.5 -1.2 22 467-488 2-23 (23)
230 KOG2113 Predicted RNA binding 56.5 2.8 6E-05 39.8 -0.8 52 443-494 136-188 (394)
231 KOG3899 Uncharacterized conser 54.2 7.1 0.00015 36.8 1.5 28 461-489 325-365 (381)
232 COG5183 SSM4 Protein involved 51.0 15 0.00033 39.7 3.4 53 442-495 11-71 (1175)
233 KOG3113 Uncharacterized conser 49.9 13 0.00029 34.3 2.5 46 442-490 110-159 (293)
234 KOG1645 RING-finger-containing 48.5 12 0.00026 37.2 2.1 31 456-487 22-54 (463)
235 PF14569 zf-UDP: Zinc-binding 48.3 14 0.0003 27.6 1.9 47 442-489 8-62 (80)
236 PF08746 zf-RING-like: RING-li 48.0 22 0.00048 23.3 2.7 38 446-484 1-43 (43)
237 KOG0827 Predicted E3 ubiquitin 46.4 15 0.00032 36.3 2.3 28 460-488 25-55 (465)
238 PF04423 Rad50_zn_hook: Rad50 45.1 9.7 0.00021 26.4 0.7 12 478-489 20-31 (54)
239 PF10083 DUF2321: Uncharacteri 44.4 11 0.00025 32.2 1.1 27 462-492 27-53 (158)
240 cd00350 rubredoxin_like Rubred 43.3 9.3 0.0002 23.4 0.3 16 478-493 17-32 (33)
241 KOG2114 Vacuolar assembly/sort 43.0 14 0.0003 40.4 1.7 42 443-488 840-882 (933)
242 KOG3268 Predicted E3 ubiquitin 41.6 18 0.00039 31.5 1.9 49 440-489 162-228 (234)
243 KOG3799 Rab3 effector RIM1 and 41.5 12 0.00027 30.8 0.8 29 440-474 62-91 (169)
244 COG4306 Uncharacterized protei 41.0 14 0.0003 30.2 1.0 24 464-491 29-52 (160)
245 KOG4217 Nuclear receptors of t 40.7 1.8E+02 0.004 29.8 8.8 29 442-476 268-298 (605)
246 KOG0825 PHD Zn-finger protein 40.6 14 0.00031 39.8 1.4 45 445-490 101-155 (1134)
247 KOG3053 Uncharacterized conser 39.2 17 0.00036 33.8 1.4 47 440-487 17-80 (293)
248 PF13248 zf-ribbon_3: zinc-rib 38.9 5.7 0.00012 22.9 -1.1 21 467-487 5-25 (26)
249 KOG1815 Predicted E3 ubiquitin 38.5 20 0.00044 37.1 2.1 34 442-476 69-103 (444)
250 PLN02189 cellulose synthase 37.9 21 0.00045 40.3 2.1 47 442-489 33-87 (1040)
251 KOG3842 Adaptor protein Pellin 37.4 17 0.00036 34.8 1.1 43 452-495 313-357 (429)
252 PF04710 Pellino: Pellino; In 37.0 11 0.00025 37.3 0.0 38 455-494 303-343 (416)
253 cd00729 rubredoxin_SM Rubredox 36.1 14 0.00029 22.9 0.2 15 479-493 19-33 (34)
254 PF05605 zf-Di19: Drought indu 35.9 13 0.00029 25.6 0.2 39 443-489 2-42 (54)
255 KOG1819 FYVE finger-containing 33.7 33 0.00071 34.9 2.6 28 444-472 902-933 (990)
256 PF10571 UPF0547: Uncharacteri 32.7 6.6 0.00014 22.7 -1.4 20 467-486 3-22 (26)
257 PF10764 Gin: Inhibitor of sig 32.1 42 0.00091 22.4 2.1 31 445-477 1-31 (46)
258 PLN02436 cellulose synthase A 31.9 28 0.00061 39.5 2.0 47 442-489 35-89 (1094)
259 KOG3039 Uncharacterized conser 31.0 29 0.00062 32.1 1.6 31 444-475 44-74 (303)
260 KOG1812 Predicted E3 ubiquitin 30.4 21 0.00045 36.1 0.6 33 443-476 146-182 (384)
261 PF10235 Cript: Microtubule-as 30.2 22 0.00047 27.6 0.5 36 444-489 45-80 (90)
262 PF07191 zinc-ribbons_6: zinc- 27.7 5.4 0.00012 29.2 -2.9 40 445-490 3-42 (70)
263 PF02318 FYVE_2: FYVE-type zin 27.6 9.2 0.0002 31.5 -2.1 45 442-487 53-103 (118)
264 PRK01343 zinc-binding protein; 26.7 26 0.00056 24.6 0.4 11 479-489 10-20 (57)
265 KOG0801 Predicted E3 ubiquitin 26.5 28 0.00061 29.9 0.6 40 423-462 153-199 (205)
266 COG1379 PHP family phosphoeste 24.8 29 0.00064 33.5 0.5 45 445-490 228-277 (403)
267 PHA02610 uvsY.-2 hypothetical 24.5 36 0.00078 23.2 0.7 15 480-494 3-17 (53)
268 PF09237 GAGA: GAGA factor; I 22.8 29 0.00064 23.7 0.1 13 478-490 24-36 (54)
269 COG2093 DNA-directed RNA polym 22.7 26 0.00055 25.0 -0.2 22 466-487 6-27 (64)
270 PF09538 FYDLN_acid: Protein o 21.9 26 0.00057 28.3 -0.3 22 467-488 12-36 (108)
271 PF06906 DUF1272: Protein of u 21.8 61 0.0013 22.6 1.5 23 464-489 30-52 (57)
272 PLN02638 cellulose synthase A 21.4 91 0.002 35.6 3.5 47 442-489 16-70 (1079)
273 KOG4451 Uncharacterized conser 20.8 58 0.0013 29.7 1.5 22 467-488 252-273 (286)
274 COG3058 FdhE Uncharacterized p 20.2 72 0.0016 30.3 2.0 46 441-486 183-233 (308)
275 PF10217 DUF2039: Uncharacteri 20.1 44 0.00094 26.1 0.5 35 444-487 56-90 (92)
No 1
>PHA02791 ankyrin-like protein; Provisional
Probab=99.97 E-value=7.5e-30 Score=244.26 Aligned_cols=214 Identities=13% Similarity=0.081 Sum_probs=183.1
Q ss_pred chhhhchhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-
Q 010920 4 SLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP- 82 (497)
Q Consensus 4 ~l~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~- 82 (497)
.|.+.+...+|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+..| +.+++++|+++|++++.++.
T Consensus 17 ~Lis~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g-~~eiV~lLL~~Gadvn~~d~~ 93 (284)
T PHA02791 17 FLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLE-DTKIVKILLFSGMDDSQFDDK 93 (284)
T ss_pred HHHhCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCC-CHHHHHHHHHCCCCCCCCCCC
Confidence 46666777789999999999999999999999999999998765 789999999984 59999999999999998766
Q ss_pred --------ccCCCHHHHHHHHhCCCCCcccCCCCC-CHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhh
Q 010920 83 --------AKRGLEPTVRLLLSCGANALVRNDDCH-TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ 153 (497)
Q Consensus 83 --------~~~g~~~~v~~Ll~~ga~~~~~~~~g~-T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~ 153 (497)
+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++++.. ....|.|||| +|+.
T Consensus 94 G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~---d~~~g~TpLh-~Aa~ 169 (284)
T PHA02791 94 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIH-ITIK 169 (284)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc---ccccCccHHH-HHHH
Confidence 889999999999999999999998885 89999999999999999999876542 2235899999 9999
Q ss_pred cCCHHHHHHhhhCCCCCCCCCcccccc-cccCCcCcCHHHHH--HHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 154 LMSRKIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVI--ALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 154 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~-l~~~~~~~~~~~~~--~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
.|+.+++++|+++|++.+..+..+.++ ++.+...++...+. ...+++++.++..+ ++| +..+.+++|.++
T Consensus 170 ~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~ 242 (284)
T PHA02791 170 NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEK 242 (284)
T ss_pred cCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHh
Confidence 999999999999999988877666655 88888877765554 44889999998855 444 677788888755
Q ss_pred C
Q 010920 231 E 231 (497)
Q Consensus 231 ~ 231 (497)
-
T Consensus 243 ~ 243 (284)
T PHA02791 243 H 243 (284)
T ss_pred h
Confidence 3
No 2
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-30 Score=219.22 Aligned_cols=157 Identities=24% Similarity=0.248 Sum_probs=113.4
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCCCCcCc---------
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRP--------- 82 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~-~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~~~--------- 82 (497)
|.+|+||||+||..|+.++|.+|++ .+..+|.+|..|+||||.||..|+ .++|+.|+.. |+|+|..+.
T Consensus 35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~-~evVk~Ll~r~~advna~tn~G~T~LHyA 113 (226)
T KOG4412|consen 35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN-DEVVKELLNRSGADVNATTNGGQTCLHYA 113 (226)
T ss_pred cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc-HHHHHHHhcCCCCCcceecCCCcceehhh
Confidence 4499999999999999999999995 567899999999999999999977 7888887776 676666544
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
+..|+.+++++|+++|+.++.+|..|.||||.|+..|..+++++|+..|+.+| .+|+.|+|||| .|...++.+...+
T Consensus 114 agK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n--~qDk~G~TpL~-~al~e~~~d~a~l 190 (226)
T KOG4412|consen 114 AGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN--TQDKYGFTPLH-HALAEGHPDVAVL 190 (226)
T ss_pred hcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC--cccccCccHHH-HHHhccCchHHHH
Confidence 55566666666666666666666666666666666666666666666666666 56666666666 5555556666666
Q ss_pred hhhCCCCCCCCC
Q 010920 163 VIPCGTANPSKP 174 (497)
Q Consensus 163 Ll~~ga~~~~~~ 174 (497)
|+++|++....+
T Consensus 191 LV~~gAd~~~ed 202 (226)
T KOG4412|consen 191 LVRAGADTDRED 202 (226)
T ss_pred HHHhccceeecc
Confidence 666665554433
No 3
>PHA02946 ankyin-like protein; Provisional
Probab=99.97 E-value=5.4e-29 Score=255.21 Aligned_cols=228 Identities=14% Similarity=0.057 Sum_probs=188.6
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCC-cHHHHHHHHHcCCCCCCc-Cc-------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGANINAY-RP------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~-~~~~v~~Ll~~ga~~~~~-~~------- 82 (497)
.++..|.||||+|++.|+.++|++||++|+++|.+|..|.||||+|+..+. ..+++++|+++|++++.. +.
T Consensus 67 ~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~ 146 (446)
T PHA02946 67 ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL 146 (446)
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH
Confidence 356699999999999999999999999999999999999999999988632 479999999999999853 32
Q ss_pred -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC--CH
Q 010920 83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM--SR 157 (497)
Q Consensus 83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~--~~ 157 (497)
+..++.+++++|++.|++++.+|..|.||||+|+..+ +.+++++|+++|++++ .+|.+|.|||| +|+..+ +.
T Consensus 147 aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin--~~d~~G~TpLH-~Aa~~~~~~~ 223 (446)
T PHA02946 147 ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS--KPDHDGNTPLH-IVCSKTVKNV 223 (446)
T ss_pred HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCCCcH
Confidence 6678999999999999999999999999999998755 4689999999999999 89999999999 888765 78
Q ss_pred HHHHHhhhCCCCCCCCCcccccccccCCcCcCHHH---HHHHhhcCC--------------------CCC-CCCCCChHH
Q 010920 158 KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA---VIALWKAKI--------------------DEP-KFHQPDPSL 213 (497)
Q Consensus 158 ~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~---~~~l~~~~~--------------------~~~-~~~g~~pl~ 213 (497)
+++++|+. |++.+..+..+.++++.+....+... ++...++.+ ... ...|.||||
T Consensus 224 ~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh 302 (446)
T PHA02946 224 DIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFK 302 (446)
T ss_pred HHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHH
Confidence 99999985 89999888889999999887765432 222232221 111 235779999
Q ss_pred HHHHhCChhHHHHHHhCCCCHHHHHHHHHhhc
Q 010920 214 TIYDQATKIRYKFASANEGDKHQLQWLDNACR 245 (497)
Q Consensus 214 ~a~~~~~~~~~~~l~~~~~~~~~~~~l~~ac~ 245 (497)
+|+.+++.+.+++|...+.+. .+.|+.|..
T Consensus 303 ~Aa~~g~~eivk~Ll~~~~~~--~t~L~~A~~ 332 (446)
T PHA02946 303 MAVEVGSIRCVKYLLDNDIIC--EDAMYYAVL 332 (446)
T ss_pred HHHHcCCHHHHHHHHHCCCcc--ccHHHHHHH
Confidence 999999999999999876543 345655544
No 4
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=253.44 Aligned_cols=216 Identities=14% Similarity=0.180 Sum_probs=167.6
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCC--------------
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN-------------- 78 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~-------------- 78 (497)
.+..|.||||.|++.|+.++|++|+++|+++|..+..|.||||+|+.. ++.+++++|+++|+++.
T Consensus 31 ~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ 109 (434)
T PHA02874 31 SVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI-GAHDIIKLLIDNGVDTSILPIPCIEKDMIKT 109 (434)
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence 456899999999999999999999999999999999999999999998 45999999998887643
Q ss_pred ---------CcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc
Q 010920 79 ---------AYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE 140 (497)
Q Consensus 79 ---------~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~ 140 (497)
..+. +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus 110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n--~~~ 187 (434)
T PHA02874 110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN--VKD 187 (434)
T ss_pred HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC--CCC
Confidence 2222 66677777888777777777777777888888887777888888887777777 677
Q ss_pred cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhC-
Q 010920 141 FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQA- 219 (497)
Q Consensus 141 ~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~- 219 (497)
..|.|||| +|+..|+.+++++|+++|++.......+.++++.+...+.....+.+.++.++..+..|.||||+|+..+
T Consensus 188 ~~g~tpL~-~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~ 266 (434)
T PHA02874 188 NNGESPLH-NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPC 266 (434)
T ss_pred CCCCCHHH-HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCC
Confidence 77788888 7777777888888887777766666667777777765555444444466777777777888888877654
Q ss_pred ChhHHHHHHhCCC
Q 010920 220 TKIRYKFASANEG 232 (497)
Q Consensus 220 ~~~~~~~l~~~~~ 232 (497)
....+++|...+.
T Consensus 267 ~~~iv~~Ll~~ga 279 (434)
T PHA02874 267 DIDIIDILLYHKA 279 (434)
T ss_pred cHHHHHHHHHCcC
Confidence 5666776665443
No 5
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.96 E-value=5.8e-28 Score=251.78 Aligned_cols=226 Identities=16% Similarity=0.122 Sum_probs=172.3
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----------
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------- 82 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------- 82 (497)
+..|.||||+|++.|+.++|++|+++|+++|.+|..|.||||+||..|+ .+++++|++.+.+.+....
T Consensus 34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~ 112 (477)
T PHA02878 34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPN-KLGMKEMIRSINKCSVFYTLVAIKDAFNNR 112 (477)
T ss_pred cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCcc-HhHHHHHHHHHhccccccchhhHHHHHHcC
Confidence 3468899999999999999999999999999999999999999999854 8888888776544332110
Q ss_pred ---------------------------ccC--CCHHHHHHHHhCCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHHCCC
Q 010920 83 ---------------------------AKR--GLEPTVRLLLSCGANALVRNDD-CHTALGVARIKGHINVVRAIESHIC 132 (497)
Q Consensus 83 ---------------------------~~~--g~~~~v~~Ll~~ga~~~~~~~~-g~T~Lh~A~~~g~~~~v~~Ll~~g~ 132 (497)
... ...+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+
T Consensus 113 ~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga 192 (477)
T PHA02878 113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGA 192 (477)
T ss_pred CHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence 001 1234788888888888888887 8888888888888888888888888
Q ss_pred cccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcC-cC--HHHHHHHhhcCCCCCCC-CC
Q 010920 133 YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD-VQ--PRAVIALWKAKIDEPKF-HQ 208 (497)
Q Consensus 133 ~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~-~~--~~~~~~l~~~~~~~~~~-~g 208 (497)
+++ ..|..|.|||| .|+..++.+++++|+++|++.+..+..+.++++.+... .. ...++...+++++..+. .|
T Consensus 193 d~n--~~d~~g~tpLh-~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g 269 (477)
T PHA02878 193 NVN--IPDKTNNSPLH-HAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG 269 (477)
T ss_pred CCC--CcCCCCCCHHH-HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCC
Confidence 888 78888888888 88888888888888888888887777788888887743 23 33344447778877765 68
Q ss_pred CChHHHHHHhCChhHHHHHHhCCCC-----HHHHHHHHHhhc
Q 010920 209 PDPSLTIYDQATKIRYKFASANEGD-----KHQLQWLDNACR 245 (497)
Q Consensus 209 ~~pl~~a~~~~~~~~~~~l~~~~~~-----~~~~~~l~~ac~ 245 (497)
.||||.| .+....+++|.+.+.+ ....++++.|+.
T Consensus 270 ~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~ 309 (477)
T PHA02878 270 LTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVK 309 (477)
T ss_pred CCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 8888888 3556677777766554 233355555544
No 6
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.96 E-value=1.1e-27 Score=253.37 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=28.5
Q ss_pred CHHHHHHHHhCCCCCcccCCCCCCHHHHHHH--cCCHHHHHHHHHCCCcccccccccCCCCHHH
Q 010920 87 LEPTVRLLLSCGANALVRNDDCHTALGVARI--KGHINVVRAIESHICYFCGWLREFYGPSFLE 148 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~--~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh 148 (497)
+.+++++|+++|++++.+|..|+||||+|+. .++.+++++|+++|++++ .+|..|.||||
T Consensus 296 ~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN--~kD~~G~TPLH 357 (764)
T PHA02716 296 DISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN--EPDNIGNTVLH 357 (764)
T ss_pred CHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc--cCCCCCCCHHH
Confidence 3444444444555544444445555554432 234444555555555444 44444555554
No 7
>PHA03095 ankyrin-like protein; Provisional
Probab=99.96 E-value=1.8e-27 Score=248.25 Aligned_cols=219 Identities=17% Similarity=0.069 Sum_probs=190.7
Q ss_pred hhcCCCchHHHHHHHcC---CHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc------
Q 010920 12 QQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------ 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g---~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------ 82 (497)
.++..|.||||+|+..| +.+++++|++.|+++|.++..|.||||+|+..|++.+++++|+++|++++..+.
T Consensus 42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpL 121 (471)
T PHA03095 42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL 121 (471)
T ss_pred cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 34668999999999998 999999999999999999999999999999986569999999999999998776
Q ss_pred ---c--cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHCCCcccccccccCCCCHHHHHhhh--
Q 010920 83 ---A--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEALAPQ-- 153 (497)
Q Consensus 83 ---~--~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~-- 153 (497)
+ ..++.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+++|++++ ..|..|.|||| .++.
T Consensus 122 h~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~--~~d~~g~t~Lh-~~~~~~ 198 (471)
T PHA03095 122 HVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY--AVDDRFRSLLH-HHLQSF 198 (471)
T ss_pred HHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHHC
Confidence 3 456889999999999999999999999999998876 5789999999999998 67999999999 6654
Q ss_pred cCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCH----HHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920 154 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP----RAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 229 (497)
Q Consensus 154 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~----~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~ 229 (497)
.+..+++++|+.+|++.+..+..+.+++|.+...+.. ...+...+.+++..+..|.||||+|+..++...+++|..
T Consensus 199 ~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~ 278 (471)
T PHA03095 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA 278 (471)
T ss_pred CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4678999999999999988888899999998876653 223444788999999999999999999999999999887
Q ss_pred CCCC
Q 010920 230 NEGD 233 (497)
Q Consensus 230 ~~~~ 233 (497)
.+.+
T Consensus 279 ~gad 282 (471)
T PHA03095 279 LGAD 282 (471)
T ss_pred cCCC
Confidence 6554
No 8
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=248.47 Aligned_cols=216 Identities=18% Similarity=0.153 Sum_probs=162.7
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHH-----HHHhCCcHHHHHHHHHcCCCCCCcCc-----
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIV-----ACMDSGLINVAKTLIELGANINAYRP----- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~-----Aa~~g~~~~~v~~Ll~~ga~~~~~~~----- 82 (497)
++..|.||||+|++.|+.++|++|+++|++++..+..|.||||+ |+.. ++.+++++|+++|++++..+.
T Consensus 31 ~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~-~~~~iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 31 SYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLT-DVKEIVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhh-chHHHHHHHHHCCCCCCCCCCCCCch
Confidence 45678888888888888888888888888888888788888888 8876 448888888888888766554
Q ss_pred ----c--cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920 83 ----A--KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 154 (497)
Q Consensus 83 ----~--~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~ 154 (497)
+ ..|+.+++++|+++|++++..+..|.||||+|+..| +.+++++|+++|++++ .++..|.|||| +|+..
T Consensus 110 L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din--~~d~~g~tpL~-~A~~~ 186 (480)
T PHA03100 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN--AKNRYGYTPLH-IAVEK 186 (480)
T ss_pred hhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc--cccCCCCCHHH-HHHHh
Confidence 5 677888888888888888888888888888888888 7888888888888887 67778888888 78888
Q ss_pred CCHHHHHHhhhCCCCCCCCCccc------ccccccCCcCcC--HHH--HHHHhhcCCCCCCCCCCChHHHHHHhCChhHH
Q 010920 155 MSRKIWVVVIPCGTANPSKPLRF------ELVIYPSLQDVQ--PRA--VIALWKAKIDEPKFHQPDPSLTIYDQATKIRY 224 (497)
Q Consensus 155 ~~~~iv~~Ll~~ga~~~~~~~~~------~~~l~~~~~~~~--~~~--~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~ 224 (497)
|+.+++++|+++|++.......+ .++++.+...+. ... .+...+++++..+..|.||||+|+..++...+
T Consensus 187 ~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv 266 (480)
T PHA03100 187 GNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 266 (480)
T ss_pred CCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 88888888888887766554434 666666665555 333 33336677777777788888888877777777
Q ss_pred HHHHhCCC
Q 010920 225 KFASANEG 232 (497)
Q Consensus 225 ~~l~~~~~ 232 (497)
++|...+.
T Consensus 267 ~~Ll~~ga 274 (480)
T PHA03100 267 KYLLDLGA 274 (480)
T ss_pred HHHHHcCC
Confidence 77776554
No 9
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=248.47 Aligned_cols=222 Identities=17% Similarity=0.136 Sum_probs=204.1
Q ss_pred hcCCCchHHHH-----HHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHH--HhCCcHHHHHHHHHcCCCCCCcCc---
Q 010920 13 QRQSKDELLYQ-----WVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVAC--MDSGLINVAKTLIELGANINAYRP--- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~-----Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa--~~g~~~~~v~~Ll~~ga~~~~~~~--- 82 (497)
.+..|.||||+ |+..|+.+++++|+++|++++..|..|.||||+|+ .. ++.+++++|+++|++++..+.
T Consensus 64 ~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~-~~~~iv~~Ll~~g~~~~~~~~~g~ 142 (480)
T PHA03100 64 STKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKS-NSYSIVEYLLDNGANVNIKNSDGE 142 (480)
T ss_pred ccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhccc-ChHHHHHHHHHcCCCCCccCCCCC
Confidence 45689999999 99999999999999999999999999999999999 87 559999999999999988765
Q ss_pred ------ccCC--CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCC------CCHHH
Q 010920 83 ------AKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG------PSFLE 148 (497)
Q Consensus 83 ------~~~g--~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G------~T~Lh 148 (497)
+..| +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||
T Consensus 143 t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~~~~~~~t~l~ 220 (480)
T PHA03100 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN--AGDIETLLFTIFETPLH 220 (480)
T ss_pred cHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc--CCCCCCCcHHHHHhHHH
Confidence 6778 9999999999999999999999999999999999999999999999998 788888 89999
Q ss_pred HHhhhcCC--HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHH--HhhcCCCCCCCCCCChHHHHHHhCChhHH
Q 010920 149 ALAPQLMS--RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA--LWKAKIDEPKFHQPDPSLTIYDQATKIRY 224 (497)
Q Consensus 149 ~~A~~~~~--~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~g~~pl~~a~~~~~~~~~ 224 (497)
.|+..++ .+++++|+++|++.+..+..+.++++.+...+....+.. ..+++++..+..|.||+++|+..+....+
T Consensus 221 -~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv 299 (480)
T PHA03100 221 -IAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIF 299 (480)
T ss_pred -HHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHH
Confidence 8999999 999999999999998888889999999998777655443 48889999999999999999999999999
Q ss_pred HHHHhCCCCHHHHH
Q 010920 225 KFASANEGDKHQLQ 238 (497)
Q Consensus 225 ~~l~~~~~~~~~~~ 238 (497)
+++...+.+...+.
T Consensus 300 ~~Ll~~g~~i~~i~ 313 (480)
T PHA03100 300 KLLLNNGPSIKTII 313 (480)
T ss_pred HHHHhcCCCHHHHH
Confidence 99999988876544
No 10
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.95 E-value=3.7e-27 Score=241.62 Aligned_cols=216 Identities=17% Similarity=0.041 Sum_probs=193.5
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCC
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGL 87 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~ 87 (497)
.+++||.|++.|+.+++++|+++|+++|.++..|.||||+|+..| +.+++++|+++|++++..+. +..|+
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFR-DSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 578999999999999999999999999999999999999999985 59999999999999887643 88999
Q ss_pred HHHHHHHHhCCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 88 EPTVRLLLSCGANAL-VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 88 ~~~v~~Ll~~ga~~~-~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||| +|+..|+.+++++|+++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~~~~g~tpLh-~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD--IPNTDKFSPLH-LAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHhc
Confidence 999999999998764 456789999999999999999999999999999 89999999999 99999999999999999
Q ss_pred CCCCCCCCcccccccccCCcCcCHHHH--HHHhhcCCCCCCCCCC-ChHHHHHHhCChhHHHHHHhCCCCHHH
Q 010920 167 GTANPSKPLRFELVIYPSLQDVQPRAV--IALWKAKIDEPKFHQP-DPSLTIYDQATKIRYKFASANEGDKHQ 236 (497)
Q Consensus 167 ga~~~~~~~~~~~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~g~-~pl~~a~~~~~~~~~~~l~~~~~~~~~ 236 (497)
|++.+..+..+.++++.+...+....+ +...+++++..+..|. +|+++|+..+....+++|...+.+...
T Consensus 158 g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 158 KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence 999888888899999999988776554 4448889998888775 788889999999999999988776543
No 11
>PHA03095 ankyrin-like protein; Provisional
Probab=99.95 E-value=7e-27 Score=243.87 Aligned_cols=223 Identities=18% Similarity=0.159 Sum_probs=197.0
Q ss_pred hcCCCchHHHHHHHcC-CHHHHHHHHHcCCCccccCCCCChHHHHHHHhC-CcHHHHHHHHHcCCCCCCcCc--------
Q 010920 13 QRQSKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANINAYRP-------- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g-~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g-~~~~~v~~Ll~~ga~~~~~~~-------- 82 (497)
++..|.||||+|+..| +.+++++|+++|+++|.+|..|.||||+|+... .+.+++++|+++|++++..+.
T Consensus 79 ~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~ 158 (471)
T PHA03095 79 PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158 (471)
T ss_pred CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 4559999999999999 599999999999999999999999999999421 358999999999999998765
Q ss_pred ---ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHc--CCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCH
Q 010920 83 ---AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 157 (497)
Q Consensus 83 ---~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~--g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~ 157 (497)
...+..+++++|+++|++++..|..|.||||+|+.. ++.+++++|+++|++++ .+|..|.|||| +|+..++.
T Consensus 159 a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~--~~d~~g~tpLh-~Aa~~~~~ 235 (471)
T PHA03095 159 LLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA--ATDMLGNTPLH-SMATGSSC 235 (471)
T ss_pred HHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhcCCc
Confidence 234578999999999999999999999999999875 77899999999999999 89999999999 88888864
Q ss_pred --HHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHH--HHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920 158 --KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI--ALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD 233 (497)
Q Consensus 158 --~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~ 233 (497)
.+++.|+..|++.+..+..+.+++|.+...+....+. ...+++++..+..|.|||+.|+.+++...++++.....+
T Consensus 236 ~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~ 315 (471)
T PHA03095 236 KRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS 315 (471)
T ss_pred hHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 6888999999999998888999999999876665544 448899999999999999999999999999999988777
Q ss_pred HHHHH
Q 010920 234 KHQLQ 238 (497)
Q Consensus 234 ~~~~~ 238 (497)
.....
T Consensus 316 ~~~~~ 320 (471)
T PHA03095 316 AETVA 320 (471)
T ss_pred HHHHH
Confidence 65443
No 12
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.4e-28 Score=202.81 Aligned_cols=195 Identities=18% Similarity=0.159 Sum_probs=158.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCC-CccccCC-CCChHHHHHHHhCCcHHHHHHHHH-cCCCCCCcCc---------c
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDK-EGKTPLIVACMDSGLINVAKTLIE-LGANINAYRP---------A 83 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~-~ga~~~~~~~---------~ 83 (497)
.+.++.+.+++.....-|+.|++... .+|.++. +|+|||||||.. +|.+++++|++ .+..+|.+|. +
T Consensus 2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~-g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~ 80 (226)
T KOG4412|consen 2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSF-GHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA 80 (226)
T ss_pred CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeec-CchhHHHHHHhcCCCCCCCccccCCchhhhhh
Confidence 35678899999998889999988765 7788877 899999999998 66999999995 4777777765 7
Q ss_pred cCCCHHHHHHHHhC-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 84 KRGLEPTVRLLLSC-GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~-ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
..|+.++|+.|+.. |+++|..+..|.|+||||+..|..+++++|+++|+.++ .+|..|.|||| -|+.-|..+++++
T Consensus 81 s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~--~kD~~~qtplH-RAAavGklkvie~ 157 (226)
T KOG4412|consen 81 SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR--IKDKQGQTPLH-RAAAVGKLKVIEY 157 (226)
T ss_pred hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc--ccccccCchhH-HHHhccchhhHHH
Confidence 77888888888877 88888888888888888888888888888888888888 88888888888 8888888888888
Q ss_pred hhhCCCCCCCCCcccccccccCCcCcCHH--HHHHHhhcCCCCCCCCCCChHHHH
Q 010920 163 VIPCGTANPSKPLRFELVIYPSLQDVQPR--AVIALWKAKIDEPKFHQPDPSLTI 215 (497)
Q Consensus 163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~g~~pl~~a 215 (497)
|+..|+..+.++..+.+++|++.-+++.. .++...++++...|+.| ||+-.+
T Consensus 158 Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a 211 (226)
T KOG4412|consen 158 LISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIA 211 (226)
T ss_pred HHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHH
Confidence 88888888887777888888875555443 33444777777777777 765533
No 13
>PHA02791 ankyrin-like protein; Provisional
Probab=99.95 E-value=8.1e-27 Score=223.35 Aligned_cols=201 Identities=16% Similarity=0.033 Sum_probs=177.2
Q ss_pred cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------ccCCCHHHHHHHHhCCC
Q 010920 27 AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------AKRGLEPTVRLLLSCGA 99 (497)
Q Consensus 27 ~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------~~~g~~~~v~~Ll~~ga 99 (497)
.++.+++++|+++|++ .+|.+|.||||+|+..| +.+++++|+++|++++..+. +..|+.+++++|+++|+
T Consensus 9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g-~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Ga 85 (284)
T PHA02791 9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADN-NVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGM 85 (284)
T ss_pred cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcC-CHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCC
Confidence 4678999999999885 58999999999999985 59999999999999887765 78899999999999999
Q ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCC-CHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccc
Q 010920 100 NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP-SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE 178 (497)
Q Consensus 100 ~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~-T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 178 (497)
+++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|+ |||| +|+..++.+++++|++++.+..... .+.
T Consensus 86 dvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin--~~~~~g~~TpL~-~Aa~~g~~eivk~LL~~~~~~~d~~-~g~ 161 (284)
T PHA02791 86 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM--FYGKTGWKTSFY-HAVMLNDVSIVSYFLSEIPSTFDLA-ILL 161 (284)
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC--ccCCCCCcHHHH-HHHHcCCHHHHHHHHhcCCcccccc-cCc
Confidence 999999999999999999999999999999999998 7888885 8999 9999999999999999875432111 367
Q ss_pred cccccCCcCcCHHHHHH--HhhcCCCCCCCCCCCh-HHHHHHhCChhHHHHHHhCCCCH
Q 010920 179 LVIYPSLQDVQPRAVIA--LWKAKIDEPKFHQPDP-SLTIYDQATKIRYKFASANEGDK 234 (497)
Q Consensus 179 ~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~g~~p-l~~a~~~~~~~~~~~l~~~~~~~ 234 (497)
+++|.+...++...+.. ..+++++..+..|.+| ||+|+..++.+.+++|...+.+.
T Consensus 162 TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i 220 (284)
T PHA02791 162 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI 220 (284)
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 99999998888765544 4888999999999987 99999999999999999776653
No 14
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.95 E-value=9.5e-27 Score=246.15 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=135.0
Q ss_pred hhhhcCCCchHHHHHHHcCC--HHHHHHHHHcCCCccccCCCCChHHHHHH-----------------------------
Q 010920 10 QHQQRQSKDELLYQWVIAGD--VDAIRALRSQGASLEWMDKEGKTPLIVAC----------------------------- 58 (497)
Q Consensus 10 ~~~~~~~G~T~Lh~Aa~~g~--~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa----------------------------- 58 (497)
...+|..|.||||+|++.|+ .++|++|+++|+++|.+|..|+||||+|+
T Consensus 205 VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~ 284 (764)
T PHA02716 205 VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMI 284 (764)
T ss_pred CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhh
Confidence 33457799999999999995 58999999999999999999999999763
Q ss_pred --------HhCCcHHHHHHHHHcCCCCCCcCc-----------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHH--
Q 010920 59 --------MDSGLINVAKTLIELGANINAYRP-----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI-- 117 (497)
Q Consensus 59 --------~~g~~~~~v~~Ll~~ga~~~~~~~-----------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~-- 117 (497)
.. ++.+++++|+++|++++.++. ...++.+++++|+++|++++.+|..|+||||+|+.
T Consensus 285 L~~~i~AA~~-g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~l 363 (764)
T PHA02716 285 LHSYITLARN-IDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSML 363 (764)
T ss_pred hHHHHHHHHc-CCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhh
Confidence 33 448999999999999988765 23568899999999999999999999999999875
Q ss_pred ------------cCCHHHHHHHHHCCCcccccccccCCCCHHHHH---hhhcCCHHHHHHhhhCCCC
Q 010920 118 ------------KGHINVVRAIESHICYFCGWLREFYGPSFLEAL---APQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 118 ------------~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~---A~~~~~~~iv~~Ll~~ga~ 169 (497)
.++.+++++|+++|++++ .+|..|.||||.+ |...++.+++++|++.|+.
T Consensus 364 av~~~ld~~~~~~~~~eVVklLL~~GADIn--~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~ 428 (764)
T PHA02716 364 SVVNILDPETDNDIRLDVIQCLISLGADIT--AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVL 428 (764)
T ss_pred hhhccccccccccChHHHHHHHHHCCCCCC--CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcch
Confidence 368999999999999999 8999999999932 2335779999999998754
No 15
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.95 E-value=3.8e-26 Score=235.40 Aligned_cols=211 Identities=19% Similarity=0.134 Sum_probs=183.0
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCC-----------------------CccccCCCCChHHHHHHHhCCcHHHHHH
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGA-----------------------SLEWMDKEGKTPLIVACMDSGLINVAKT 69 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-----------------------~~n~~d~~G~TpLh~Aa~~g~~~~~v~~ 69 (497)
.+..|.||||+|+..|+.+++++|+++|+ +++.++..|.||||+|+..|+ .+++++
T Consensus 64 ~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~-~~~v~~ 142 (434)
T PHA02874 64 INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGD-LESIKM 142 (434)
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCC-HHHHHH
Confidence 45689999999999999999999987764 567788999999999999854 999999
Q ss_pred HHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc
Q 010920 70 LIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE 140 (497)
Q Consensus 70 Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~ 140 (497)
|+++|++++..+. +..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++ .++
T Consensus 143 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~--~~~ 220 (434)
T PHA02874 143 LFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM--NKC 220 (434)
T ss_pred HHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc--CCC
Confidence 9999999998765 78899999999999999999999999999999999999999999999999998 899
Q ss_pred cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCc---CHHHHHHHhhcCCCCCCCCCCChHHHHHH
Q 010920 141 FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV---QPRAVIALWKAKIDEPKFHQPDPSLTIYD 217 (497)
Q Consensus 141 ~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~~~~~~~g~~pl~~a~~ 217 (497)
..|.|||| .|+..+. +.+++|+ .|++.+..+..+.+++|.+.... .+..++...+++++..+..|.|||+.|+.
T Consensus 221 ~~g~TpL~-~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~ 297 (434)
T PHA02874 221 KNGFTPLH-NAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK 297 (434)
T ss_pred CCCCCHHH-HHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence 99999999 8888765 5666666 58888888888999999998654 34555566899999999999999999998
Q ss_pred hC-ChhHHHHHHh
Q 010920 218 QA-TKIRYKFASA 229 (497)
Q Consensus 218 ~~-~~~~~~~l~~ 229 (497)
.. ....++.+..
T Consensus 298 ~~~~~~~ik~ll~ 310 (434)
T PHA02874 298 YINKDPVIKDIIA 310 (434)
T ss_pred hCCccHHHHHHHH
Confidence 76 4445555553
No 16
>PHA02946 ankyin-like protein; Provisional
Probab=99.94 E-value=5.5e-26 Score=232.98 Aligned_cols=212 Identities=13% Similarity=0.073 Sum_probs=180.5
Q ss_pred CCchHHHHHHH--cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 16 SKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 16 ~G~T~Lh~Aa~--~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
.+.++||.++. .++.++|++|+++|+++|.+|.+|.||||+|+..| +.++|++|+++|++++.++. +.
T Consensus 36 g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g-~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~ 114 (446)
T PHA02946 36 GNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKIN-NNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114 (446)
T ss_pred CCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcC-CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence 45799998774 45789999999999999999999999999999985 59999999999999998776 23
Q ss_pred C--CCHHHHHHHHhCCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC--CHHH
Q 010920 85 R--GLEPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM--SRKI 159 (497)
Q Consensus 85 ~--g~~~~v~~Ll~~ga~~~~-~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~--~~~i 159 (497)
. +..+++++|+++|++++. .|..|.|||| |+..|+.+++++|++.|++++ .+|..|.|||| .|+..+ +.++
T Consensus 115 ~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~--~~d~~G~t~Lh-~A~~~~~~~~~~ 190 (446)
T PHA02946 115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR--IVDKFGKNHIH-RHLMSDNPKAST 190 (446)
T ss_pred cCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc--ccCCCCCCHHH-HHHHhcCCCHHH
Confidence 3 357899999999999995 6899999997 667899999999999999999 89999999999 666544 4689
Q ss_pred HHHhhhCCCCCCCCCcccccccccCCcCc--CHHHH-HHHhhcCCCCCCCCCCChHHHHHHhCC-hhHHHHHHhCCC
Q 010920 160 WVVVIPCGTANPSKPLRFELVIYPSLQDV--QPRAV-IALWKAKIDEPKFHQPDPSLTIYDQAT-KIRYKFASANEG 232 (497)
Q Consensus 160 v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~--~~~~~-~~l~~~~~~~~~~~g~~pl~~a~~~~~-~~~~~~l~~~~~ 232 (497)
+++|+++|++.+..+..+.+++|.+...+ ....+ +.+.+++++..+..|.||||+|+..++ ...++++...+.
T Consensus 191 v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~ 267 (446)
T PHA02946 191 ISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN 267 (446)
T ss_pred HHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence 99999999999998888999999998654 33333 223588999999999999999999887 466777766544
No 17
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.94 E-value=4.3e-26 Score=247.87 Aligned_cols=218 Identities=14% Similarity=0.032 Sum_probs=192.5
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----ccCCC
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-----AKRGL 87 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-----~~~g~ 87 (497)
+|..|.||||+||+.|+.++|++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+++..+. +..++
T Consensus 174 ~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~-~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~ 252 (682)
T PHA02876 174 KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS-KNIDTIKAIIDNRSNINKNDLSLLKAIRNED 252 (682)
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCCCCCcHHHHHHHHcCC
Confidence 456899999999999999999999999999999999999999999997 459999999999888876554 77889
Q ss_pred HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH-HHHHHHHHCCCcccccccccCCCCHHHHHhhhcC-CHHHHHHhhh
Q 010920 88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHI-NVVRAIESHICYFCGWLREFYGPSFLEALAPQLM-SRKIWVVVIP 165 (497)
Q Consensus 88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~-~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~-~~~iv~~Ll~ 165 (497)
.+++++|++.|++++..+..|.||||+|+..++. +++++|++.|++++ .+|..|.|||| +|+..| ..+++++|+.
T Consensus 253 ~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin--~~d~~g~TpLh-~Aa~~g~~~~~v~~Ll~ 329 (682)
T PHA02876 253 LETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVN--AKNIKGETPLY-LMAKNGYDTENIRTLIM 329 (682)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999986 69999999999999 89999999999 888888 5999999999
Q ss_pred CCCCCCCCCcccccccccCCcCcC---HHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCCH
Q 010920 166 CGTANPSKPLRFELVIYPSLQDVQ---PRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDK 234 (497)
Q Consensus 166 ~ga~~~~~~~~~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~ 234 (497)
.|++.+..+..+.++++.+...+. ...++...+++++..+..|.||||+|+..++...+++|...+.+.
T Consensus 330 ~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~ 401 (682)
T PHA02876 330 LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401 (682)
T ss_pred cCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 999998888888999998875332 333444588999999999999999999999999999999776553
No 18
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.94 E-value=4.5e-26 Score=233.62 Aligned_cols=202 Identities=15% Similarity=0.074 Sum_probs=174.4
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCc---Cc------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY---RP------ 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~---~~------ 82 (497)
.++..|.||||+|+..|+.+++++|+++|++++..+..+.||||+|+..|+ .+++++|+++|++++.. ++
T Consensus 30 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 108 (413)
T PHA02875 30 FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD-VKAVEELLDLGKFADDVFYKDGMTPLHL 108 (413)
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC-HHHHHHHHHcCCcccccccCCCCCHHHH
Confidence 345689999999999999999999999999999999999999999999855 99999999999876532 11
Q ss_pred -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920 83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 161 (497)
Q Consensus 83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~ 161 (497)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..|+.++++
T Consensus 109 A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~TpL~-~A~~~g~~eiv~ 185 (413)
T PHA02875 109 ATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLI-IAMAKGDIAICK 185 (413)
T ss_pred HHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHH
Confidence 78899999999999999999999999999999999999999999999999999 89999999999 999999999999
Q ss_pred HhhhCCCCCCCCCcccc-cccccCCcCcCHHHHHH--HhhcCCCCC---CCCCCChHHHHHH
Q 010920 162 VVIPCGTANPSKPLRFE-LVIYPSLQDVQPRAVIA--LWKAKIDEP---KFHQPDPSLTIYD 217 (497)
Q Consensus 162 ~Ll~~ga~~~~~~~~~~-~~l~~~~~~~~~~~~~~--l~~~~~~~~---~~~g~~pl~~a~~ 217 (497)
+|+++|++.+..+..+. ++++.+...+....+.. ..+++++.. +..+.+|++.+..
T Consensus 186 ~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~ 247 (413)
T PHA02875 186 MLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICN 247 (413)
T ss_pred HHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence 99999999887665553 66666776666555444 477777654 5567788776654
No 19
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.94 E-value=8.5e-26 Score=236.33 Aligned_cols=227 Identities=18% Similarity=0.166 Sum_probs=181.9
Q ss_pred CCCchHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCChHHHHHHHhC-----CcHHHHHHHHHcCCCCCCcCc-----
Q 010920 15 QSKDELLYQWVIA--GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-----GLINVAKTLIELGANINAYRP----- 82 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~--g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g-----~~~~~v~~Ll~~ga~~~~~~~----- 82 (497)
..|.||||+++.. ++.++|++|+++|+++|.++ .+.||||.|+.++ ++.+++++|+++|+++|..+.
T Consensus 33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tp 111 (494)
T PHA02989 33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSP 111 (494)
T ss_pred cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 4689999876654 37999999999999999887 5799999998753 247899999999999998875
Q ss_pred -------ccCCCHHHHHHHHhCCCCC-cccCCCCCCHHHHHHHc--CCHHHHHHHHHCCCcccccc-cccCCCCHHHHHh
Q 010920 83 -------AKRGLEPTVRLLLSCGANA-LVRNDDCHTALGVARIK--GHINVVRAIESHICYFCGWL-REFYGPSFLEALA 151 (497)
Q Consensus 83 -------~~~g~~~~v~~Ll~~ga~~-~~~~~~g~T~Lh~A~~~--g~~~~v~~Ll~~g~~i~~~~-~~~~G~T~Lh~~A 151 (497)
...++.+++++|+++|+++ +.+|..|.||||+|+.. ++.+++++|+++|++++ . .+..|.|||| .|
T Consensus 112 L~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~--~~~~~~g~tpL~-~a 188 (494)
T PHA02989 112 IVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLF--EKTSLYGLTPMN-IY 188 (494)
T ss_pred HHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--ccccccCCChHH-HH
Confidence 2347899999999999999 88999999999998764 68999999999999998 5 6889999999 77
Q ss_pred hhc----CCHHHHHHhhhCCCCCCCCCcccccccccCCcCc------CHHHH-HHHhhcCCCCCCCCCCChHHHHHHhCC
Q 010920 152 PQL----MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV------QPRAV-IALWKAKIDEPKFHQPDPSLTIYDQAT 220 (497)
Q Consensus 152 ~~~----~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~------~~~~~-~~l~~~~~~~~~~~g~~pl~~a~~~~~ 220 (497)
+.. ++.+++++|+++|++.+..+..+.++++.+.... ....+ +.+.+++++..+..|.||||+|+..++
T Consensus 189 ~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~ 268 (494)
T PHA02989 189 LRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDN 268 (494)
T ss_pred HhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcC
Confidence 654 4899999999999998877755666665433211 11111 234678999999999999999999999
Q ss_pred hhHHHHHHhCCCCHH-----HHHHHHHhhc
Q 010920 221 KIRYKFASANEGDKH-----QLQWLDNACR 245 (497)
Q Consensus 221 ~~~~~~l~~~~~~~~-----~~~~l~~ac~ 245 (497)
.+.+++|.+.+.+.. ..++|+.|+.
T Consensus 269 ~~~v~~LL~~Gadin~~d~~G~TpL~~A~~ 298 (494)
T PHA02989 269 YEAFNYLLKLGDDIYNVSKDGDTVLTYAIK 298 (494)
T ss_pred HHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 999999997766532 3355555554
No 20
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=231.54 Aligned_cols=198 Identities=22% Similarity=0.192 Sum_probs=182.4
Q ss_pred CchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----------ccC
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------AKR 85 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------~~~ 85 (497)
-.+-++.|++.|.++.|+.|++. |.+++..|.+|.|+|||||.+ |.++++++|+++||++|..++ +++
T Consensus 44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN-Nrl~v~r~li~~gadvn~~gG~l~stPLHWAar~ 122 (600)
T KOG0509|consen 44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAIN-NRLDVARYLISHGADVNAIGGVLGSTPLHWAARN 122 (600)
T ss_pred hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc-CcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence 35678999999999999999998 999999999999999999998 559999999999999999885 899
Q ss_pred CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920 86 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP 165 (497)
Q Consensus 86 g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~ 165 (497)
|+..+|.+|+++||+++.+|.+|.|+||+|++.|+.-+|-+|+.+|++++ .+|.+|+|||| +|+..+....+..|+.
T Consensus 123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d--~~D~~grTpLm-wAaykg~~~~v~~LL~ 199 (600)
T KOG0509|consen 123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID--LRDNNGRTPLM-WAAYKGFALFVRRLLK 199 (600)
T ss_pred CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC--CcCCCCCCHHH-HHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999 8999999888999999
Q ss_pred CCCCCCCCC-cccccccccCCcCcCHHH--HHHHhhcCCCCCCCCCCChHHHHHHh
Q 010920 166 CGTANPSKP-LRFELVIYPSLQDVQPRA--VIALWKAKIDEPKFHQPDPSLTIYDQ 218 (497)
Q Consensus 166 ~ga~~~~~~-~~~~~~l~~~~~~~~~~~--~~~l~~~~~~~~~~~g~~pl~~a~~~ 218 (497)
.|+....++ .++.+++|.+...++... ++...+++.+..+.+|.||+.+|..+
T Consensus 200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 200 FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred hcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence 999988877 789999999887776544 44447789999999999999999887
No 21
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.94 E-value=1.9e-25 Score=242.85 Aligned_cols=215 Identities=17% Similarity=0.090 Sum_probs=180.5
Q ss_pred hcCCCchHHHHHHHcCCH-HHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 13 QRQSKDELLYQWVIAGDV-DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~-~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
++..|.||||+|+..|+. +++++|++.|++++.+|..|.||||+|+..|...+++++|+..|++++..+.
T Consensus 269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A 348 (682)
T PHA02876 269 IDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA 348 (682)
T ss_pred CCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence 456899999999999986 5889999999999999999999999999986458999999999999988765
Q ss_pred cc-CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc-CCHHHH
Q 010920 83 AK-RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL-MSRKIW 160 (497)
Q Consensus 83 ~~-~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~-~~~~iv 160 (497)
+. .++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||| +|+.. +...++
T Consensus 349 ~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~Lh-~A~~~~~~~~~v 425 (682)
T PHA02876 349 STLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTALH-FALCGTNPYMSV 425 (682)
T ss_pred HHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchHH-HHHHcCCHHHHH
Confidence 23 467889999999999999999999999999999999999999999999998 78899999999 66554 446778
Q ss_pred HHhhhCCCCCCCCCcccccccccCCcCc---CHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920 161 VVVIPCGTANPSKPLRFELVIYPSLQDV---QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG 232 (497)
Q Consensus 161 ~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 232 (497)
++|+++|++.+..+..+.++++.+...+ .+..++...+++++..+..|.||++.|+.... .++++...+.
T Consensus 426 k~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~~--~v~~Ll~~~a 498 (682)
T PHA02876 426 KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYHG--IVNILLHYGA 498 (682)
T ss_pred HHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC--HHHHHHHCCC
Confidence 9999999999888888999999988644 34455556889999999999999999987653 4555554443
No 22
>PHA02730 ankyrin-like protein; Provisional
Probab=99.94 E-value=2.4e-25 Score=231.25 Aligned_cols=218 Identities=13% Similarity=0.019 Sum_probs=158.6
Q ss_pred hhcCCCchHHHHHHHcC---CHHHHHHHHHcCCCccccCCCCChHHHHHHHhC-CcHHHHHHHHHcCCCC--CCcCc---
Q 010920 12 QQRQSKDELLYQWVIAG---DVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANI--NAYRP--- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g---~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g-~~~~~v~~Ll~~ga~~--~~~~~--- 82 (497)
++|..|.||||+|+..| +.++|++||++||+++.+|..|.||||+|+..+ ++.++|++|+++|+++ +..+.
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d 115 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND 115 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence 45678999999999997 599999999999999999999999999999975 2689999999886533 32220
Q ss_pred --------------------------------------------------------------------------------
Q 010920 83 -------------------------------------------------------------------------------- 82 (497)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (497)
T Consensus 116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~ 195 (672)
T PHA02730 116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR 195 (672)
T ss_pred chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence
Q ss_pred --------------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHH--HHHcCCHHHHHHHHH-----------------
Q 010920 83 --------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGV--ARIKGHINVVRAIES----------------- 129 (497)
Q Consensus 83 --------------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~--A~~~g~~~~v~~Ll~----------------- 129 (497)
...++.+++++|+++||++|.+|.+|.||||+ |...|+.++|++|++
T Consensus 196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~ 275 (672)
T PHA02730 196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIR 275 (672)
T ss_pred cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhh
Confidence 11235677888888888888888889999984 444455666666655
Q ss_pred ---------------CCC--------------------------------------------------------------
Q 010920 130 ---------------HIC-------------------------------------------------------------- 132 (497)
Q Consensus 130 ---------------~g~-------------------------------------------------------------- 132 (497)
+|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~ 355 (672)
T PHA02730 276 GVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGD 355 (672)
T ss_pred hhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCC
Confidence 343
Q ss_pred ---------------cccccccccCCCCHHHHHhhhcCC----HHHHHHhhhCCC--CCCCCCccccccccc---CCcCc
Q 010920 133 ---------------YFCGWLREFYGPSFLEALAPQLMS----RKIWVVVIPCGT--ANPSKPLRFELVIYP---SLQDV 188 (497)
Q Consensus 133 ---------------~i~~~~~~~~G~T~Lh~~A~~~~~----~~iv~~Ll~~ga--~~~~~~~~~~~~l~~---~~~~~ 188 (497)
+++ . +..|.|||| +|+..++ .+++++|+++|+ +.+..+..+.++++. +...+
T Consensus 356 ~v~ieIvelLIs~GAdIN--~-k~~G~TpLH-~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n 431 (672)
T PHA02730 356 MVSIPILRCMLDNGATMD--K-TTDNNYPLH-DYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNN 431 (672)
T ss_pred cCcHHHHHHHHHCCCCCC--c-CCCCCcHHH-HHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcc
Confidence 333 2 256788888 6666553 788888888887 355555456666652 11110
Q ss_pred -----------CHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920 189 -----------QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD 233 (497)
Q Consensus 189 -----------~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~ 233 (497)
.+..++...+++++.++..|.||||+|+..++...+++|...+.+
T Consensus 432 ~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd 487 (672)
T PHA02730 432 CGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS 487 (672)
T ss_pred ccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC
Confidence 124566668888888888899999999888888888888866554
No 23
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=230.70 Aligned_cols=173 Identities=24% Similarity=0.188 Sum_probs=158.8
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------- 82 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------- 82 (497)
.+.|.+|.|+||+||.+++++++++||++|+++|... .-|.||||||+++ +++.+|.+|+++|||++..|.
T Consensus 72 ~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~-G~~~vv~lLlqhGAdpt~~D~~G~~~lH 150 (600)
T KOG0509|consen 72 NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN-GHISVVDLLLQHGADPTLKDKQGLTPLH 150 (600)
T ss_pred CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc-CcHHHHHHHHHcCCCCceecCCCCcHHH
Confidence 4567799999999999999999999999999999998 5688999999999 559999999999999999887
Q ss_pred --ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc-cCCCCHHHHHhhhcCCHHH
Q 010920 83 --AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQLMSRKI 159 (497)
Q Consensus 83 --~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~~G~T~Lh~~A~~~~~~~i 159 (497)
+..|+.-.|-+||.+++++|.+|.+|+||||+|+.+|+...++.|+..|+.+. ..| +.|.|||| +|+..|+.++
T Consensus 151 la~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~--~~d~~~g~TpLH-wa~~~gN~~~ 227 (600)
T KOG0509|consen 151 LAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL--LTDDNHGNTPLH-WAVVGGNLTA 227 (600)
T ss_pred HHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc--ccccccCCchHH-HHHhcCCcce
Confidence 89999999999999999999999999999999999999988999999999998 455 99999999 9999999999
Q ss_pred HHHhhhCCCCCCCCCcccccccccCCcC
Q 010920 160 WVVVIPCGTANPSKPLRFELVIYPSLQD 187 (497)
Q Consensus 160 v~~Ll~~ga~~~~~~~~~~~~l~~~~~~ 187 (497)
+.+|++.|++.+.++.++.+++..+.+.
T Consensus 228 v~Ll~~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 228 VKLLLEGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred EehhhhcCCcccccccCCCCHHHHHHHh
Confidence 9977788888888888888888877644
No 24
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=227.21 Aligned_cols=217 Identities=17% Similarity=0.075 Sum_probs=142.9
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----------
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------- 82 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------- 82 (497)
+..+.+|||+|+..|+.++++.|+++|+|+|..|..|.||||+||.. ++.|..+.|++.|+++-..+.
T Consensus 118 n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~-~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~ 196 (929)
T KOG0510|consen 118 NLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARK-NKVEAKKELINKGADPCKSDIDGNFPIHEAAR 196 (929)
T ss_pred hhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhc-ChHHHHHHHHhcCCCCCcccCcCCchHHHHHH
Confidence 34555555555555555555555555555555555555555555554 445555555555555443322
Q ss_pred ------------------------------------ccCCCHHHHHHHHhCCCCC---------------cccCCCCCCH
Q 010920 83 ------------------------------------AKRGLEPTVRLLLSCGANA---------------LVRNDDCHTA 111 (497)
Q Consensus 83 ------------------------------------~~~g~~~~v~~Ll~~ga~~---------------~~~~~~g~T~ 111 (497)
+..|+.++++.+|+.|+.. +..|++|.||
T Consensus 197 s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tp 276 (929)
T KOG0510|consen 197 SGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTP 276 (929)
T ss_pred hcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCch
Confidence 6677777777777766432 3456778888
Q ss_pred HHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh-CCC-CCCCCCcccccccccCCcCcC
Q 010920 112 LGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP-CGT-ANPSKPLRFELVIYPSLQDVQ 189 (497)
Q Consensus 112 Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~-~ga-~~~~~~~~~~~~l~~~~~~~~ 189 (497)
||+|++.|+.++++.|+..|++++ .++.++.|||| .|+..|...+++-|++ .+. ..+..++++.+++|.+.+.++
T Consensus 277 LH~a~r~G~~~svd~Ll~~Ga~I~--~kn~d~~spLH-~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH 353 (929)
T KOG0510|consen 277 LHYAARQGGPESVDNLLGFGASIN--SKNKDEESPLH-FAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH 353 (929)
T ss_pred HHHHHHcCChhHHHHHHHcCCccc--ccCCCCCCchH-HHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH
Confidence 888888888888888888888887 77788888888 7778888888887777 332 245556677788888777777
Q ss_pred HHHHHHH--hhcCCC---CCCCCCCChHHHHHHhCChhHHHHHHhCCCCH
Q 010920 190 PRAVIAL--WKAKID---EPKFHQPDPSLTIYDQATKIRYKFASANEGDK 234 (497)
Q Consensus 190 ~~~~~~l--~~~~~~---~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~ 234 (497)
.+.+..| .|+... ..|++|.||||+|+..++..+++++..++.+.
T Consensus 354 ~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 354 DRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred HHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 6655544 444444 34778888888888888887777777665543
No 25
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.93 E-value=3.8e-26 Score=218.74 Aligned_cols=175 Identities=22% Similarity=0.212 Sum_probs=148.0
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHH-cCCCcc--------ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRS-QGASLE--------WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-- 82 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~-~ga~~n--------~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-- 82 (497)
..+|.|||..||++||.++|++|++ .++++. -....|-+||-.|+.. +|+++|++|+++|+++|....
T Consensus 39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaA-GHl~vVk~L~~~ga~VN~tT~TN 117 (615)
T KOG0508|consen 39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAA-GHLEVVKLLLRRGASVNDTTRTN 117 (615)
T ss_pred ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhcc-CcHHHHHHHHHhcCccccccccC
Confidence 5689999999999999999999999 455553 3345677888777765 789999999999999998655
Q ss_pred -------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC
Q 010920 83 -------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 155 (497)
Q Consensus 83 -------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~ 155 (497)
+.-|+.++|++|+++|+|++..|..|.|.||+|+.+||.+++++|++.|+|++ .++..|+|+|| .|+..|
T Consensus 118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn--~ks~kGNTALH-~caEsG 194 (615)
T KOG0508|consen 118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN--AKSYKGNTALH-DCAESG 194 (615)
T ss_pred CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc--hhcccCchHHH-hhhhcc
Confidence 77899999999999999999999999999999999999999999999999999 89999999999 999999
Q ss_pred CHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH
Q 010920 156 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV 193 (497)
Q Consensus 156 ~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~ 193 (497)
+.+++++|+.+|+.+..-. ++.+++..+...++...+
T Consensus 195 ~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~~iV 231 (615)
T KOG0508|consen 195 SVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHTDIV 231 (615)
T ss_pred cHHHHHHHHhCCceeeecC-CCCchHHHHhhhcchHHH
Confidence 9999999999998764333 244444444444443333
No 26
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.93 E-value=5.3e-25 Score=203.25 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=129.4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhC-CcHHHHHHHHHcCCCCCCcCc----------c
Q 010920 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS-GLINVAKTLIELGANINAYRP----------A 83 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g-~~~~~v~~Ll~~ga~~~~~~~----------~ 83 (497)
+.+.||||+|+..|+.++|+.|++. ++..|..|.||||+|+.++ ++.+++++|+++|++++..+. +
T Consensus 19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~ 95 (209)
T PHA02859 19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL 95 (209)
T ss_pred hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence 4789999999999999999999985 5668899999999999864 358999999999999987642 1
Q ss_pred ---cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHH--cCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHH
Q 010920 84 ---KRGLEPTVRLLLSCGANALVRNDDCHTALGVARI--KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 158 (497)
Q Consensus 84 ---~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~--~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~ 158 (497)
..++.+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++ .+|.+|.||||.+++..++.+
T Consensus 96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin--~~d~~g~t~Lh~~a~~~~~~~ 173 (209)
T PHA02859 96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL--NKDFDNNNILYSYILFHSDKK 173 (209)
T ss_pred HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccCCCCcHHHHHHHhcCCHH
Confidence 2357889999999999999999999999998875 467899999999999988 788899999984456678889
Q ss_pred HHHHhhhCCCCCCCCC
Q 010920 159 IWVVVIPCGTANPSKP 174 (497)
Q Consensus 159 iv~~Ll~~ga~~~~~~ 174 (497)
++++|+++|++.+.++
T Consensus 174 iv~~Ll~~Gadi~~~d 189 (209)
T PHA02859 174 IFDFLTSLGIDINETN 189 (209)
T ss_pred HHHHHHHcCCCCCCCC
Confidence 9999998887665444
No 27
>PHA02798 ankyrin-like protein; Provisional
Probab=99.93 E-value=1.4e-24 Score=226.89 Aligned_cols=228 Identities=14% Similarity=0.141 Sum_probs=169.2
Q ss_pred CCCchHHHHHHH--cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHh----CCcHHHHHHHHHcCCCCCCcCc------
Q 010920 15 QSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD----SGLINVAKTLIELGANINAYRP------ 82 (497)
Q Consensus 15 ~~G~T~Lh~Aa~--~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~----g~~~~~v~~Ll~~ga~~~~~~~------ 82 (497)
..|.|+++.+.. .++.++|++|+++|+++|.+|..|.||||+|+.+ .++.+++++|+++|+++|.++.
T Consensus 34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpL 113 (489)
T PHA02798 34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113 (489)
T ss_pred cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHH
Confidence 457787774444 4589999999999999999999999999998753 1348999999999999998775
Q ss_pred ---ccC---CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC---HHHHHHHHHCCCccccccc-ccCCCCHHHHHhh
Q 010920 83 ---AKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHICYFCGWLR-EFYGPSFLEALAP 152 (497)
Q Consensus 83 ---~~~---g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~---~~~v~~Ll~~g~~i~~~~~-~~~G~T~Lh~~A~ 152 (497)
+.. ++.+++++|+++|++++.+|..|.||||+|+..++ .+++++|+++|++++ .. +..|.|||| .++
T Consensus 114 h~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin--~~~~~~~~t~Lh-~~~ 190 (489)
T PHA02798 114 YCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN--THNNKEKYDTLH-CYF 190 (489)
T ss_pred HHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc--cccCcCCCcHHH-HHH
Confidence 332 47899999999999999999999999999999988 899999999999998 55 457899999 665
Q ss_pred h----cCCHHHHHHhhhCCCCCCCCCcccccccc-------cCCcCcCHHH-HHHHhhcCCCCCCCCCCChHHHHHHhCC
Q 010920 153 Q----LMSRKIWVVVIPCGTANPSKPLRFELVIY-------PSLQDVQPRA-VIALWKAKIDEPKFHQPDPSLTIYDQAT 220 (497)
Q Consensus 153 ~----~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~-------~~~~~~~~~~-~~~l~~~~~~~~~~~g~~pl~~a~~~~~ 220 (497)
. .++.+++++|+++|++....+..+.++++ .......... .+.+.+++++..+..|.||||+|+..++
T Consensus 191 ~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~ 270 (489)
T PHA02798 191 KYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN 270 (489)
T ss_pred HhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCc
Confidence 4 34789999999999887655433333322 1111111111 1223457777788888888888888888
Q ss_pred hhHHHHHHhCCCCHH-----HHHHHHHhhc
Q 010920 221 KIRYKFASANEGDKH-----QLQWLDNACR 245 (497)
Q Consensus 221 ~~~~~~l~~~~~~~~-----~~~~l~~ac~ 245 (497)
...+++|.+.+.+.. ..++|+.|+.
T Consensus 271 ~~~v~~LL~~GAdin~~d~~G~TpL~~A~~ 300 (489)
T PHA02798 271 RKIFEYLLQLGGDINIITELGNTCLFTAFE 300 (489)
T ss_pred HHHHHHHHHcCCcccccCCCCCcHHHHHHH
Confidence 888888876665432 3345555543
No 28
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.93 E-value=2.4e-24 Score=225.38 Aligned_cols=217 Identities=12% Similarity=0.011 Sum_probs=184.5
Q ss_pred CCchHHHHHHHcC------CHHHHHHHHHcCCCccccCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCC-CCcCc----
Q 010920 16 SKDELLYQWVIAG------DVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANI-NAYRP---- 82 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g------~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g--~~~~~v~~Ll~~ga~~-~~~~~---- 82 (497)
.+.||||.|+..+ +.++|++|+++|+++|.+|..|.||||.|+..+ ++.+++++|+++|+++ +..+.
T Consensus 68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t 147 (494)
T PHA02989 68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN 147 (494)
T ss_pred CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence 4789999998754 578999999999999999999999999988753 3589999999999999 56544
Q ss_pred -------ccCCCHHHHHHHHhCCCCCcc-cCCCCCCHHHHHHHcC----CHHHHHHHHHCCCcccccccccCCCCHHHHH
Q 010920 83 -------AKRGLEPTVRLLLSCGANALV-RNDDCHTALGVARIKG----HINVVRAIESHICYFCGWLREFYGPSFLEAL 150 (497)
Q Consensus 83 -------~~~g~~~~v~~Ll~~ga~~~~-~~~~g~T~Lh~A~~~g----~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~ 150 (497)
...++.+++++|+++|++++. .+..|.||||+|+..+ +.+++++|+++|++++ ..+..|.|+|| .
T Consensus 148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn--~~~~~~~t~l~-~ 224 (494)
T PHA02989 148 LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE--TNNNGSESVLE-S 224 (494)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcc--ccCCccccHHH-H
Confidence 234689999999999999998 6889999999998764 8999999999999999 78889999999 6
Q ss_pred hhhc------CCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH--HHHhhcCCCCCCCCCCChHHHHHHhCChh
Q 010920 151 APQL------MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV--IALWKAKIDEPKFHQPDPSLTIYDQATKI 222 (497)
Q Consensus 151 A~~~------~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~--~~l~~~~~~~~~~~g~~pl~~a~~~~~~~ 222 (497)
++.. +..+++++|+. |++.+..+..+.++++.+...++...+ +...|++++..+..|.|||++|+..++..
T Consensus 225 ~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~ 303 (494)
T PHA02989 225 FLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNID 303 (494)
T ss_pred HHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence 5443 35678887665 699998888899999999977766554 44489999999999999999999999999
Q ss_pred HHHHHHhCCCCHHH
Q 010920 223 RYKFASANEGDKHQ 236 (497)
Q Consensus 223 ~~~~l~~~~~~~~~ 236 (497)
.++++.........
T Consensus 304 iv~~LL~~~p~~~~ 317 (494)
T PHA02989 304 MLNRILQLKPGKYL 317 (494)
T ss_pred HHHHHHhcCCChHH
Confidence 99998877655443
No 29
>PHA02917 ankyrin-like protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=229.70 Aligned_cols=218 Identities=13% Similarity=0.084 Sum_probs=173.8
Q ss_pred hhcCCCchHHHHHHHc---CCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcH----HHHHHHHHcCCCCCCcCc--
Q 010920 12 QQRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRP-- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~----~~v~~Ll~~ga~~~~~~~-- 82 (497)
..|..|.||||+|+.. |+.++|++||+.|++++.++..|.||||+|+.. ++. +++++|++++..++..+.
T Consensus 27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~-g~~~v~~~~~~~Ll~~~~~~n~~~~~~ 105 (661)
T PHA02917 27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS-RHVKVNKDIAMALLEATGYSNINDFNI 105 (661)
T ss_pred ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-CChhHHHHHHHHHHhccCCCCCCCcch
Confidence 3477999999998665 889999999999999999999999999999998 444 466889887543444332
Q ss_pred -----ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHH--HcCCHHHHHHHHHCCCcccccccc---cCC---------
Q 010920 83 -----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVAR--IKGHINVVRAIESHICYFCGWLRE---FYG--------- 143 (497)
Q Consensus 83 -----~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~--~~g~~~~v~~Ll~~g~~i~~~~~~---~~G--------- 143 (497)
+..++.++|++|+++|++++.+|..|+||||.|+ ..|+.+++++|+++|++++ ..| ..|
T Consensus 106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn--~~d~~~~~g~~~~~~~~~ 183 (661)
T PHA02917 106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL--YEDEDDEYGYAYDDYQPR 183 (661)
T ss_pred HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc--cccccccccccccccccc
Confidence 6778999999999999999999999999999653 5789999999999999997 443 334
Q ss_pred --CCHHHHHhhh-----------cCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCH--HHHHHH-hhcCCC----C
Q 010920 144 --PSFLEALAPQ-----------LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP--RAVIAL-WKAKID----E 203 (497)
Q Consensus 144 --~T~Lh~~A~~-----------~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~--~~~~~l-~~~~~~----~ 203 (497)
.|||| +|+. .++.+++++|+++|++.+..+..+.++++.+...++. ..+..| .+++.. .
T Consensus 184 ~~~t~L~-~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~ 262 (661)
T PHA02917 184 NCGTVLH-LYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAYSYI 262 (661)
T ss_pred ccccHHH-HHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcccccccc
Confidence 59999 6764 4689999999999999999988899999999987764 222222 454443 3
Q ss_pred CCCCCCChHHHHHHh---------CChhHHHHHHhCCCC
Q 010920 204 PKFHQPDPSLTIYDQ---------ATKIRYKFASANEGD 233 (497)
Q Consensus 204 ~~~~g~~pl~~a~~~---------~~~~~~~~l~~~~~~ 233 (497)
.+..+.+|++++.-. ...+.+++|.+.+.+
T Consensus 263 ~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~ 301 (661)
T PHA02917 263 DDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP 301 (661)
T ss_pred cCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence 556778888888731 156778888877754
No 30
>PHA02795 ankyrin-like protein; Provisional
Probab=99.92 E-value=1.8e-24 Score=214.93 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=138.5
Q ss_pred hcCCCchHHHHHHH--cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcC--------c
Q 010920 13 QRQSKDELLYQWVI--AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR--------P 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~--~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~--------~ 82 (497)
.+.+++|+||+|+. .|+.++|++|+++||+++.++ +.||||+|+.. ++.+++++|+++|++.+... .
T Consensus 112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~--~~t~lh~A~~~-~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~ 188 (437)
T PHA02795 112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE--CLNAYFRGICK-KESSVVEFILNCGIPDENDVKLDLYKIIQ 188 (437)
T ss_pred ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHc-CcHHHHHHHHhcCCcccccccchhhhhhc
Confidence 46789999999999 999999999999999998854 58999999998 45999999999998533222 0
Q ss_pred -------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC
Q 010920 83 -------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 155 (497)
Q Consensus 83 -------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~ 155 (497)
...++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| .|+..|
T Consensus 189 ~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh-~Aa~~g 265 (437)
T PHA02795 189 YTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLD-VAVDRG 265 (437)
T ss_pred cchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcC
Confidence 45567899999999999999999999999999999999999999999999999 89999999999 888877
Q ss_pred --------CHHHHHHhhhCCCCCCCCC
Q 010920 156 --------SRKIWVVVIPCGTANPSKP 174 (497)
Q Consensus 156 --------~~~iv~~Ll~~ga~~~~~~ 174 (497)
+.+++++|+++|++.+...
T Consensus 266 ~~~~~~~~~~eIvelLL~~gadI~~~~ 292 (437)
T PHA02795 266 SVIARRETHLKILEILLREPLSIDCIK 292 (437)
T ss_pred CcccccccHHHHHHHHHhCCCCCCchh
Confidence 4699999999999876544
No 31
>PHA02798 ankyrin-like protein; Provisional
Probab=99.92 E-value=1.2e-23 Score=219.75 Aligned_cols=224 Identities=12% Similarity=0.081 Sum_probs=192.4
Q ss_pred hcCCCchHHHHHHHc-----CCHHHHHHHHHcCCCccccCCCCChHHHHHHHhC--CcHHHHHHHHHcCCCCCCcCc---
Q 010920 13 QRQSKDELLYQWVIA-----GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRP--- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~-----g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g--~~~~~v~~Ll~~ga~~~~~~~--- 82 (497)
++..|.||||.|+.. ++.+++++|+++|+++|.+|..|.||||+|+..+ ++.+++++|+++|++++..+.
T Consensus 67 ~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~ 146 (489)
T PHA02798 67 LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGF 146 (489)
T ss_pred CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCC
Confidence 456999999999864 7799999999999999999999999999999975 368999999999999998876
Q ss_pred ------ccCCC---HHHHHHHHhCCCCCcccC-CCCCCHHHHHHHc----CCHHHHHHHHHCCCcccccccccCCCCHHH
Q 010920 83 ------AKRGL---EPTVRLLLSCGANALVRN-DDCHTALGVARIK----GHINVVRAIESHICYFCGWLREFYGPSFLE 148 (497)
Q Consensus 83 ------~~~g~---~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~----g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh 148 (497)
+..++ .+++++|+++|++++.++ ..|.||||.++.. ++.+++++|+++|++++ ..+..|.|+++
T Consensus 147 tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~--~~~~~~~~~~~ 224 (489)
T PHA02798 147 TMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN--KENKSHKKKFM 224 (489)
T ss_pred cHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc--cCCccccchHH
Confidence 55666 999999999999999885 5799999998764 47999999999999998 78888999876
Q ss_pred H------HhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHH--HHhhcCCCCCCCCCCChHHHHHHhCC
Q 010920 149 A------LAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI--ALWKAKIDEPKFHQPDPSLTIYDQAT 220 (497)
Q Consensus 149 ~------~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~g~~pl~~a~~~~~ 220 (497)
. ++...++.+++.+|+. +++.+.++..+.+++|.+...+....+. ...|++++..+..|.|||+.|+.++.
T Consensus 225 ~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~ 303 (489)
T PHA02798 225 EYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES 303 (489)
T ss_pred HHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc
Confidence 1 1345567888888776 6899988888999999998777665544 44899999999999999999999999
Q ss_pred hhHHHHHHhCCCCHHHHHH
Q 010920 221 KIRYKFASANEGDKHQLQW 239 (497)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~ 239 (497)
...++.+.....+...+..
T Consensus 304 ~~iv~~lL~~~~~~~~i~~ 322 (489)
T PHA02798 304 KFIFNSILNKKPNKNTISY 322 (489)
T ss_pred HHHHHHHHccCCCHHHHHH
Confidence 9999999988887765543
No 32
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.91 E-value=5.2e-24 Score=222.10 Aligned_cols=211 Identities=14% Similarity=0.054 Sum_probs=181.4
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCC-----------------------------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG----------------------------- 62 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~----------------------------- 62 (497)
.++..|.||||+||..|+.+++++|++.+...+. ..+.+|||.|+..|+
T Consensus 65 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~ 142 (477)
T PHA02878 65 QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKD 142 (477)
T ss_pred CCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccch
Confidence 4567999999999999999999999998766544 467899999988643
Q ss_pred ---cHHHHHHHHHcCCCCCCcCc----------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010920 63 ---LINVAKTLIELGANINAYRP----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 129 (497)
Q Consensus 63 ---~~~~v~~Ll~~ga~~~~~~~----------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~ 129 (497)
..+++++|+++|++++..+. +..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++
T Consensus 143 ~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~ 222 (477)
T PHA02878 143 DIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE 222 (477)
T ss_pred hhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 12388999999999988653 78899999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCHHHHHhhh-cCCHHHHHHhhhCCCCCCCCCc-ccccccccCCcCcCHHHHHHHhhcCCCCCCCC
Q 010920 130 HICYFCGWLREFYGPSFLEALAPQ-LMSRKIWVVVIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIALWKAKIDEPKFH 207 (497)
Q Consensus 130 ~g~~i~~~~~~~~G~T~Lh~~A~~-~~~~~iv~~Ll~~ga~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (497)
.|++++ .+|..|.|||| +|+. .++.+++++|+++|++.+.... .+.+++|.+........++...+++++..+..
T Consensus 223 ~ga~in--~~d~~g~TpLh-~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~~d~~ 299 (477)
T PHA02878 223 NGASTD--ARDKCGNTPLH-ISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADINSLNSY 299 (477)
T ss_pred cCCCCC--CCCCCCCCHHH-HHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCCCCcCCC
Confidence 999999 89999999999 7775 4789999999999999887663 58899999976666666677799999999999
Q ss_pred CCChHHHHHHhC-ChhHHHHH
Q 010920 208 QPDPSLTIYDQA-TKIRYKFA 227 (497)
Q Consensus 208 g~~pl~~a~~~~-~~~~~~~l 227 (497)
|.|||+.|+... .....+++
T Consensus 300 g~TpL~~A~~~~~~~~~~~~l 320 (477)
T PHA02878 300 KLTPLSSAVKQYLCINIGRIL 320 (477)
T ss_pred CCCHHHHHHHHcCccchHHHH
Confidence 999999998753 33344433
No 33
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.91 E-value=9.6e-24 Score=202.37 Aligned_cols=149 Identities=24% Similarity=0.305 Sum_probs=141.7
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
+..|.+||-.|+..||+++|++|+++|+++|.......|||--||.. +|+++|++|+++|+|+++.+. +.
T Consensus 81 ~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfD-G~leivKyLvE~gad~~IanrhGhTcLmIa~y 159 (615)
T KOG0508|consen 81 TIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFD-GHLEIVKYLVEHGADPEIANRHGHTCLMIACY 159 (615)
T ss_pred ccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhc-chhHHHHHHHHcCCCCcccccCCCeeEEeeec
Confidence 56799999999999999999999999999999998888999999998 569999999999999999887 88
Q ss_pred CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920 85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 164 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll 164 (497)
.||.+++++|++.|+|+|.++..|+|+||.++..|+.+++++|+++|+.++ .|.+|.|||. .|+..|+.++|++|+
T Consensus 160 kGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~---~d~~GmtPL~-~Aa~tG~~~iVe~L~ 235 (615)
T KOG0508|consen 160 KGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID---VDGHGMTPLL-LAAVTGHTDIVERLL 235 (615)
T ss_pred cCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee---ecCCCCchHH-HHhhhcchHHHHHHh
Confidence 899999999999999999999999999999999999999999999999997 8889999999 999999999999999
Q ss_pred hCC
Q 010920 165 PCG 167 (497)
Q Consensus 165 ~~g 167 (497)
...
T Consensus 236 ~~~ 238 (615)
T KOG0508|consen 236 QCE 238 (615)
T ss_pred cCC
Confidence 733
No 34
>PHA02795 ankyrin-like protein; Provisional
Probab=99.90 E-value=1.4e-22 Score=201.47 Aligned_cols=157 Identities=13% Similarity=-0.047 Sum_probs=136.2
Q ss_pred HHHHcCCHHHHHHHHHcCCCcc------ccCCCCChHHHHHHH--hCCcHHHHHHHHHcCCCCCCcCc-------ccCCC
Q 010920 23 QWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACM--DSGLINVAKTLIELGANINAYRP-------AKRGL 87 (497)
Q Consensus 23 ~Aa~~g~~~~v~~Ll~~ga~~n------~~d~~G~TpLh~Aa~--~g~~~~~v~~Ll~~ga~~~~~~~-------~~~g~ 87 (497)
+|+..+..+++++|+++|+++| .++..++|+||+|+. . ++.++|++|+++||+++..+. +..++
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~-n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~ 161 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY-VEIDIVDFMVDHGAVIYKIECLNAYFRGICKKE 161 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC-CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCc
Confidence 9999999999999999999998 888899999999999 6 569999999999999988654 66799
Q ss_pred HHHHHHHHhCCCCCcccC------CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920 88 EPTVRLLLSCGANALVRN------DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 161 (497)
Q Consensus 88 ~~~v~~Ll~~ga~~~~~~------~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~ 161 (497)
.+++++|+++|++..... ..+.|++|.|+..++.+++++|+++|++++ .+|..|.|||| +|+..|+.++++
T Consensus 162 ~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN--~kD~~G~TpLh-~Aa~~g~~eiVe 238 (437)
T PHA02795 162 SSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN--QLDAGGRTLLY-RAIYAGYIDLVS 238 (437)
T ss_pred HHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--cCCCCCCCHHH-HHHHcCCHHHHH
Confidence 999999999998543222 347899999999999999999999999999 89999999999 999999999999
Q ss_pred HhhhCCCCCCCCCccccccccc
Q 010920 162 VVIPCGTANPSKPLRFELVIYP 183 (497)
Q Consensus 162 ~Ll~~ga~~~~~~~~~~~~l~~ 183 (497)
+|+++|++.+..+..+.++++.
T Consensus 239 lLL~~GAdIN~~d~~G~TpLh~ 260 (437)
T PHA02795 239 WLLENGANVNAVMSNGYTCLDV 260 (437)
T ss_pred HHHHCCCCCCCcCCCCCCHHHH
Confidence 9999998775555433333333
No 35
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.89 E-value=1.9e-22 Score=186.20 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=125.6
Q ss_pred hhhcCCCchHHHHHHHcC--CHHHHHHHHHcCCCccccC-CCCChHHHHHHHhC--CcHHHHHHHHHcCCCCCCcCc---
Q 010920 11 HQQRQSKDELLYQWVIAG--DVDAIRALRSQGASLEWMD-KEGKTPLIVACMDS--GLINVAKTLIELGANINAYRP--- 82 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g--~~~~v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g--~~~~~v~~Ll~~ga~~~~~~~--- 82 (497)
...+..|.||||+|+..+ +.+++++|+++|+++|.++ ..|.||||+|+..+ ++.+++++|+++|++++..+.
T Consensus 45 n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~ 124 (209)
T PHA02859 45 NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGK 124 (209)
T ss_pred hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCC
Confidence 346789999999999854 8999999999999999997 48999999998742 358999999999999999876
Q ss_pred ------c--cCCCHHHHHHHHhCCCCCcccCCCCCCHHHH-HHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhh
Q 010920 83 ------A--KRGLEPTVRLLLSCGANALVRNDDCHTALGV-ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQ 153 (497)
Q Consensus 83 ------~--~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~-A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~ 153 (497)
+ ..++.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++ .+|..|.|||| +|+.
T Consensus 125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~--~~d~~g~tpl~-la~~ 201 (209)
T PHA02859 125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN--ETNKSGYNCYD-LIKF 201 (209)
T ss_pred CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhh
Confidence 2 2468999999999999999999999999995 567889999999999999999 89999999999 7765
Q ss_pred cC
Q 010920 154 LM 155 (497)
Q Consensus 154 ~~ 155 (497)
++
T Consensus 202 ~~ 203 (209)
T PHA02859 202 RN 203 (209)
T ss_pred hh
Confidence 43
No 36
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.89 E-value=8.3e-23 Score=207.86 Aligned_cols=212 Identities=15% Similarity=0.074 Sum_probs=180.7
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
|..|.||||+|++....+.|+.|++.|++++..+.++.+|||+|+..|+ .++.++|+++|+|+|..+. +.
T Consensus 85 D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~-~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~ 163 (929)
T KOG0510|consen 85 DSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGN-YSCLKLLLDYGADVNLEDENGFTPLHLAAR 163 (929)
T ss_pred hcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccch-HHHHHHHHHhcCCccccccCCCchhhHHHh
Confidence 6789999999999999999999999999999999999999999999866 9999999999999999887 77
Q ss_pred CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-----CCCcccccccccCCCCHHHHHhhhcCCHHH
Q 010920 85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-----HICYFCGWLREFYGPSFLEALAPQLMSRKI 159 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~-----~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~i 159 (497)
.++.+..+.|++.|+++-..|.+|++|+|.|++.|..++.++.+. ++..++ ..+..|.|||| .|+..|+.++
T Consensus 164 ~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in--~~~n~~~~pLh-lAve~g~~e~ 240 (929)
T KOG0510|consen 164 KNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN--FDNNEKATPLH-LAVEGGDIEM 240 (929)
T ss_pred cChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc--cccCCCCcchh-hhhhcCCHHH
Confidence 889998899999999998888899999999999999999888887 667777 67888888888 8888888888
Q ss_pred HHHhhhCCCCCC---------------CCCcccccccccCCcCcCHHHHHH--HhhcCCCCCCCCCCChHHHHHHhCChh
Q 010920 160 WVVVIPCGTANP---------------SKPLRFELVIYPSLQDVQPRAVIA--LWKAKIDEPKFHQPDPSLTIYDQATKI 222 (497)
Q Consensus 160 v~~Ll~~ga~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~g~~pl~~a~~~~~~~ 222 (497)
++.+++.|..+. ..+..+.+++|.+.+++.+..+-. ..|++++.++.++.+|||.|+..++..
T Consensus 241 lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~n 320 (929)
T KOG0510|consen 241 LKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRIN 320 (929)
T ss_pred HHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHH
Confidence 888888776532 122346788888888887766543 378888888888888888888888888
Q ss_pred HHHHHHh
Q 010920 223 RYKFASA 229 (497)
Q Consensus 223 ~~~~l~~ 229 (497)
.++-|..
T Consensus 321 tv~rLL~ 327 (929)
T KOG0510|consen 321 TVERLLQ 327 (929)
T ss_pred HHHHHHh
Confidence 7777665
No 37
>PHA02730 ankyrin-like protein; Provisional
Probab=99.89 E-value=7.9e-22 Score=205.14 Aligned_cols=210 Identities=14% Similarity=0.078 Sum_probs=171.6
Q ss_pred HHcCCHHHHHHHHHcCCCccccCCCCChHHHH--HHHhCCcHHHHHHHHH------------------------------
Q 010920 25 VIAGDVDAIRALRSQGASLEWMDKEGKTPLIV--ACMDSGLINVAKTLIE------------------------------ 72 (497)
Q Consensus 25 a~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~--Aa~~g~~~~~v~~Ll~------------------------------ 72 (497)
..+++.+++++||++||++|.+|.+|.||||+ |... ++.|+|++|++
T Consensus 210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~-~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (672)
T PHA02730 210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCST-IDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRV 288 (672)
T ss_pred hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCc-ccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhc
Confidence 45689999999999999999999999999995 4444 34999999999
Q ss_pred --cCCCCCC--------------------cCc------------------------------cc---CCCHHHHHHHHhC
Q 010920 73 --LGANINA--------------------YRP------------------------------AK---RGLEPTVRLLLSC 97 (497)
Q Consensus 73 --~ga~~~~--------------------~~~------------------------------~~---~g~~~~v~~Ll~~ 97 (497)
+|+|+.. .+. .. ..+.+++++|+++
T Consensus 289 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~ 368 (672)
T PHA02730 289 TPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN 368 (672)
T ss_pred ccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC
Confidence 7888755 110 12 2579999999999
Q ss_pred CCCCcccCCCCCCHHHHHHHcCC----HHHHHHHHHCCC--cccccccccCCCCHHHH--HhhhcC---------CHHHH
Q 010920 98 GANALVRNDDCHTALGVARIKGH----INVVRAIESHIC--YFCGWLREFYGPSFLEA--LAPQLM---------SRKIW 160 (497)
Q Consensus 98 ga~~~~~~~~g~T~Lh~A~~~g~----~~~v~~Ll~~g~--~i~~~~~~~~G~T~Lh~--~A~~~~---------~~~iv 160 (497)
||++|.. ..|.||||+|+..++ .+++++|+++|+ +++ .+|.+|.||||. ++...+ ..+++
T Consensus 369 GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN--~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~iv 445 (672)
T PHA02730 369 GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN--HVSNNGRLCMYGLILSRFNNCGYHCYETILIDVF 445 (672)
T ss_pred CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc--ccccCCCchHhHHHHHHhccccccccchhHHHHH
Confidence 9999985 799999999998875 899999999998 577 789999999992 232222 23579
Q ss_pred HHhhhCCCCCCCCCcccccccccCCcCcCH--HHHHHHhhcCCCCCCC-CCCChHHHHHHh--CChhHHHHHHhCCCCHH
Q 010920 161 VVVIPCGTANPSKPLRFELVIYPSLQDVQP--RAVIALWKAKIDEPKF-HQPDPSLTIYDQ--ATKIRYKFASANEGDKH 235 (497)
Q Consensus 161 ~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~--~~~~~l~~~~~~~~~~-~g~~pl~~a~~~--~~~~~~~~l~~~~~~~~ 235 (497)
++|+++|++.+..+..+.++++.+...+.. ..++...|++++..+. .|.+|+++|... +....++++...+.+..
T Consensus 446 k~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~ 525 (672)
T PHA02730 446 DILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE 525 (672)
T ss_pred HHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence 999999999999999999999999876655 4455568999999997 599999999874 67889999998887765
Q ss_pred HHH
Q 010920 236 QLQ 238 (497)
Q Consensus 236 ~~~ 238 (497)
.+.
T Consensus 526 ~I~ 528 (672)
T PHA02730 526 TMI 528 (672)
T ss_pred HHH
Confidence 544
No 38
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.87 E-value=1.8e-22 Score=187.99 Aligned_cols=159 Identities=25% Similarity=0.373 Sum_probs=113.6
Q ss_pred chhhhchhhhcCCCchHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCChHHHHHHHhC----CcHHHHHHHHHcCCCCC
Q 010920 4 SLNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQG-ASLEWMDKEGKTPLIVACMDS----GLINVAKTLIELGANIN 78 (497)
Q Consensus 4 ~l~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~g-a~~n~~d~~G~TpLh~Aa~~g----~~~~~v~~Ll~~ga~~~ 78 (497)
.|-.+=.+.-|.+|+|+||||+.++++++|+.||..| .+++.+|..|+||+|+|+... .+.++|.-|+..| |||
T Consensus 255 ~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVN 333 (452)
T KOG0514|consen 255 PLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVN 333 (452)
T ss_pred HHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccc
Confidence 3334444556779999999999999999999999999 699999999999999999852 2356677776654 455
Q ss_pred CcCc----------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCcccccccccCCCCHH
Q 010920 79 AYRP----------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPSFL 147 (497)
Q Consensus 79 ~~~~----------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~i~~~~~~~~G~T~L 147 (497)
++-. +..|+.++|+.||.+|||+|.+|.+|.|+||.|+.+||.++|++||.. ++|+. ..|.+|.|+|
T Consensus 334 aKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s--LtD~DgSTAl 411 (452)
T KOG0514|consen 334 AKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS--LTDVDGSTAL 411 (452)
T ss_pred hhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce--eecCCCchhh
Confidence 4432 556666666666666666666666666666666666666666666654 45665 6666666666
Q ss_pred HHHhhhcCCHHHHHHhhhC
Q 010920 148 EALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 148 h~~A~~~~~~~iv~~Ll~~ 166 (497)
. +|...|+.+|.-+|..+
T Consensus 412 ~-IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 412 S-IALEAGHREIAVMLYAH 429 (452)
T ss_pred h-hHHhcCchHHHHHHHHH
Confidence 6 66666666666655543
No 39
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.87 E-value=3.4e-22 Score=215.48 Aligned_cols=171 Identities=24% Similarity=0.180 Sum_probs=106.7
Q ss_pred CCchHHHHHHHcC-CHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccC
Q 010920 16 SKDELLYQWVIAG-DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKR 85 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g-~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~ 85 (497)
.|.||+|+|+..| +.++...++..|+++|....+|.||||.|+.. +|.+++++|++.++..+.... ...
T Consensus 439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~-Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~ 517 (1143)
T KOG4177|consen 439 LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQE-GHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE 517 (1143)
T ss_pred cCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhcc-CCchHHHHhhhcCCccCccchhccchhhhhhhh
Confidence 5666666666666 56666666666666666666666666666665 346666666665544433322 445
Q ss_pred CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920 86 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP 165 (497)
Q Consensus 86 g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~ 165 (497)
++..+++.++++|++++.++.+|+||||.|+.+|+.++|++|+++|++++ .+++.|+|||| .|+..|+.+|+++|++
T Consensus 518 ~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~--ak~~~G~TPLH-~Aa~~G~~~i~~LLlk 594 (1143)
T KOG4177|consen 518 DTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN--AKDKLGYTPLH-QAAQQGHNDIAELLLK 594 (1143)
T ss_pred hhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc--ccCCCCCChhh-HHHHcChHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666 56666666666 6666666666666666
Q ss_pred CCCCCCCCCcccccccccCCcCcCH
Q 010920 166 CGTANPSKPLRFELVIYPSLQDVQP 190 (497)
Q Consensus 166 ~ga~~~~~~~~~~~~l~~~~~~~~~ 190 (497)
+|++.+..+..+.++++.+...+.+
T Consensus 595 ~GA~vna~d~~g~TpL~iA~~lg~~ 619 (1143)
T KOG4177|consen 595 HGASVNAADLDGFTPLHIAVRLGYL 619 (1143)
T ss_pred cCCCCCcccccCcchhHHHHHhccc
Confidence 6666666666566666665554443
No 40
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.87 E-value=1.3e-22 Score=218.69 Aligned_cols=218 Identities=21% Similarity=0.158 Sum_probs=190.4
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A 83 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~ 83 (497)
+...|.||||.|+..++.++|+.++++|++++.++..|+||+|+|+..|.+.+++..+++.|+++|.... +
T Consensus 403 ~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaa 482 (1143)
T KOG4177|consen 403 AGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAA 482 (1143)
T ss_pred CCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhh
Confidence 4557888888888888888888888888888888888888888888885478888888888888888665 7
Q ss_pred cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L 163 (497)
..||.++++.|++.++..+.....|.|+||+|...++..+++.++.+|++++ .++.+|.|||| .|+..|+..+|++|
T Consensus 483 q~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~--~~~~r~~TpLh-~A~~~g~v~~VkfL 559 (1143)
T KOG4177|consen 483 QEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVD--LRTGRGYTPLH-VAVHYGNVDLVKFL 559 (1143)
T ss_pred ccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCcee--hhcccccchHH-HHHhcCCchHHHHh
Confidence 7889999999998888888888889999999999999999999999999998 89999999999 99999999999999
Q ss_pred hhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920 164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD 233 (497)
Q Consensus 164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~ 233 (497)
+++|++...+...+.+++|.+...++...+..| +|+.++..+.+|.|||+.|+..+.....+++.....+
T Consensus 560 Le~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 560 LEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred hhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 999999998888899999999988876555444 9999999999999999999999999999988855444
No 41
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.87 E-value=3.8e-21 Score=170.95 Aligned_cols=142 Identities=12% Similarity=0.150 Sum_probs=121.1
Q ss_pred chhhhcCCCchHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCccc
Q 010920 9 NQHQQRQSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAK 84 (497)
Q Consensus 9 ~~~~~~~~G~T~Lh~Aa~~g~~----~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~ 84 (497)
|..+.+..+.++||+||+.|+. +++++|++.|++++.+|..|+||||+|+..|. .+.
T Consensus 12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~-~~~------------------ 72 (166)
T PHA02743 12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDR-ANA------------------ 72 (166)
T ss_pred HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCc-cCH------------------
Confidence 3445567899999999999998 66778889999999999999999999999744 222
Q ss_pred CCCHHHHHHHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHH-CCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 85 RGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+. .|++++ .++..|.|||| +|+..++.+++++
T Consensus 73 ---~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~tpL~-~A~~~~~~~iv~~ 146 (166)
T PHA02743 73 ---VMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG--AINYQHETAYH-IAYKMRDRRMMEI 146 (166)
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc--CcCCCCCCHHH-HHHHcCCHHHHHH
Confidence 234566667777777787 589999999999999999999995 899999 89999999999 9999999999999
Q ss_pred hhhCCCCCCCCCc
Q 010920 163 VIPCGTANPSKPL 175 (497)
Q Consensus 163 Ll~~ga~~~~~~~ 175 (497)
|+.+|++.+....
T Consensus 147 Ll~~ga~~~~~~~ 159 (166)
T PHA02743 147 LRANGAVCDDPLS 159 (166)
T ss_pred HHHcCCCCCCccc
Confidence 9999998866553
No 42
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.86 E-value=4.1e-21 Score=211.96 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=139.9
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A 83 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~ 83 (497)
.+..+.++||.||..|+.++++.|++.|+++|..|..|.||||+|+.. ++.+++++|+++|+++|.++. +
T Consensus 521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~ 599 (823)
T PLN03192 521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK-GYEDCVLVLLKHACNVHIRDANGNTALWNAI 599 (823)
T ss_pred CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence 345678999999999999999999999999999999999999999998 559999999999999998765 7
Q ss_pred cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L 163 (497)
..|+.+++++|++.++..+ ...|.++||.|+..|+.+++++|+++|++++ .+|.+|.|||| +|+..|+.+++++|
T Consensus 600 ~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin--~~d~~G~TpLh-~A~~~g~~~iv~~L 674 (823)
T PLN03192 600 SAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD--SEDHQGATALQ-VAMAEDHVDMVRLL 674 (823)
T ss_pred HhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCcHHHHHHH
Confidence 7899999999998877653 3457789999999999999999999999999 89999999999 89999999999999
Q ss_pred hhCCCCCCCCC
Q 010920 164 IPCGTANPSKP 174 (497)
Q Consensus 164 l~~ga~~~~~~ 174 (497)
+++|++.+..+
T Consensus 675 l~~GAdv~~~~ 685 (823)
T PLN03192 675 IMNGADVDKAN 685 (823)
T ss_pred HHcCCCCCCCC
Confidence 99998876554
No 43
>PHA02741 hypothetical protein; Provisional
Probab=99.86 E-value=4.3e-21 Score=171.35 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=114.5
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCC
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRS------QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRG 86 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~------~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g 86 (497)
++..|.||||+|++.|+.+++++|+. .|++++.+|..|.||||+|+..|. .+++
T Consensus 17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~-~~~~------------------- 76 (169)
T PHA02741 17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHE-AQLA------------------- 76 (169)
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCC-hHHH-------------------
Confidence 46799999999999999999999864 368899999999999999999743 3222
Q ss_pred CHHHHHHHHhCCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHH-CCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920 87 LEPTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 164 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~~~~~~~-~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll 164 (497)
.+++++|+++|++++.++. .|.||||+|+..++.+++++|+. .|++++ ..|.+|.|||| +|+..++.+++++|+
T Consensus 77 -~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~tpL~-~A~~~~~~~iv~~L~ 152 (169)
T PHA02741 77 -AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH--FCNADNKSPFE-LAIDNEDVAMMQILR 152 (169)
T ss_pred -HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCCHHH-HHHHCCCHHHHHHHH
Confidence 2455666677777777875 89999999999999999999997 599998 89999999999 999999999999999
Q ss_pred hCCCC
Q 010920 165 PCGTA 169 (497)
Q Consensus 165 ~~ga~ 169 (497)
+.++.
T Consensus 153 ~~~~~ 157 (169)
T PHA02741 153 EIVAT 157 (169)
T ss_pred HHHHH
Confidence 87654
No 44
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.85 E-value=1.3e-21 Score=170.44 Aligned_cols=149 Identities=25% Similarity=0.183 Sum_probs=122.7
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
+.+..+.+|+.+++...+.+.+.+|.+. -+|..|..|.|||+||+.. +|+.+|++||+.|||++....
T Consensus 124 evs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~-G~i~vV~fLL~~GAdp~~lgk~resALsLA 200 (296)
T KOG0502|consen 124 EVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK-GHIPVVQFLLNSGADPDALGKYRESALSLA 200 (296)
T ss_pred ccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc-CchHHHHHHHHcCCChhhhhhhhhhhHhHH
Confidence 3455788899999988888888777665 6788899999999999998 568999999999988888655
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
...|..++|++||.++.|+|..|.+|.|||-||++.+|.+|++.|+..|++++ ..+..|.+++. .|+..|+. +|+.
T Consensus 201 t~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~~md-lAValGyr-~Vqq 276 (296)
T KOG0502|consen 201 TRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYWIMD-LAVALGYR-IVQQ 276 (296)
T ss_pred hcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCcHHH-HHHHhhhH-HHHH
Confidence 66778888888888888888888888888888888888888888888888888 78888888888 78888877 6666
Q ss_pred hhhCC
Q 010920 163 VIPCG 167 (497)
Q Consensus 163 Ll~~g 167 (497)
.|++.
T Consensus 277 vie~h 281 (296)
T KOG0502|consen 277 VIEKH 281 (296)
T ss_pred HHHHH
Confidence 66543
No 45
>PHA02917 ankyrin-like protein; Provisional
Probab=99.85 E-value=3.1e-20 Score=197.89 Aligned_cols=196 Identities=10% Similarity=-0.005 Sum_probs=156.2
Q ss_pred HHHHHHHHHcCCCccccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCCCCcCc---------ccCCCH----HHHHHH
Q 010920 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRP---------AKRGLE----PTVRLL 94 (497)
Q Consensus 30 ~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~--g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~----~~v~~L 94 (497)
++.|+.|+..|..++.+|.+|+||||+|+.. .++.++|++||++|++++..+. +..|+. +++++|
T Consensus 12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L 91 (661)
T PHA02917 12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL 91 (661)
T ss_pred HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence 5788999999999999999999999998664 1349999999999999998765 667774 456788
Q ss_pred HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHH-hhhcCCHHHHHHhhhCCCCCCCC
Q 010920 95 LSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL-APQLMSRKIWVVVIPCGTANPSK 173 (497)
Q Consensus 95 l~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~-A~~~~~~~iv~~Ll~~ga~~~~~ 173 (497)
++.+...+..+ ..+++|+|+..|+.++|++|+++|++++ .+|.+|+||||.+ |+..++.+++++|+++|++.+..
T Consensus 92 l~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin--~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~ 167 (661)
T PHA02917 92 LEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS--VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYE 167 (661)
T ss_pred HhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCC--ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccc
Confidence 87654344433 2377888999999999999999999999 8999999999943 34688999999999999987543
Q ss_pred Cc--------------ccccccccCCc-----------Cc--CHHHHHHHhhcCCCCCCCCCCChHHHHHHhCCh--hHH
Q 010920 174 PL--------------RFELVIYPSLQ-----------DV--QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK--IRY 224 (497)
Q Consensus 174 ~~--------------~~~~~l~~~~~-----------~~--~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~--~~~ 224 (497)
+. ...++++.+.. .+ .+..++...|++++..+.+|.||||+|+.+++. +.+
T Consensus 168 d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eiv 247 (661)
T PHA02917 168 DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIV 247 (661)
T ss_pred ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHH
Confidence 21 12477776643 11 344555558999999999999999999999885 688
Q ss_pred HHHHh
Q 010920 225 KFASA 229 (497)
Q Consensus 225 ~~l~~ 229 (497)
++|..
T Consensus 248 k~Li~ 252 (661)
T PHA02917 248 KLLMK 252 (661)
T ss_pred HHHHh
Confidence 88864
No 46
>PHA02792 ankyrin-like protein; Provisional
Probab=99.84 E-value=1.3e-19 Score=186.77 Aligned_cols=218 Identities=11% Similarity=-0.028 Sum_probs=171.7
Q ss_pred hcCCCchHHHHHHHcC-------CHHHHHHHHHcCCCccccCCCCChHHHHHHHhCC-cHHHHHHHHHcCC---------
Q 010920 13 QRQSKDELLYQWVIAG-------DVDAIRALRSQGASLEWMDKEGKTPLIVACMDSG-LINVAKTLIELGA--------- 75 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g-------~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~-~~~~v~~Ll~~ga--------- 75 (497)
++..|.||||+|+..+ +.+++++|+++|++++.+|..|.||||+|+.+.. ..|++++|+..--
T Consensus 171 ~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l 250 (631)
T PHA02792 171 DDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNIL 250 (631)
T ss_pred CCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHH
Confidence 4567999999999999 8999999999999999999999999999999840 4789999986311
Q ss_pred -------------CCCC--cCc-----------------------------------------ccC--CCHHHHHHHHhC
Q 010920 76 -------------NINA--YRP-----------------------------------------AKR--GLEPTVRLLLSC 97 (497)
Q Consensus 76 -------------~~~~--~~~-----------------------------------------~~~--g~~~~v~~Ll~~ 97 (497)
++|. .+. ... -+.+++++|+++
T Consensus 251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~ 330 (631)
T PHA02792 251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE 330 (631)
T ss_pred HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence 0110 000 233 488999999999
Q ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCC--CCHHHHHhhhcCCH---HHHHHhhhCCCCCCC
Q 010920 98 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG--PSFLEALAPQLMSR---KIWVVVIPCGTANPS 172 (497)
Q Consensus 98 ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G--~T~Lh~~A~~~~~~---~iv~~Ll~~ga~~~~ 172 (497)
|++++ ......++|.|+..|+.++|++|+++|++++ .+|.+| .|||| +|...... +++++|+++|++.+.
T Consensus 331 Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN--~kD~~g~~~TpLh-~A~~n~~~~v~~IlklLIs~GADIN~ 405 (631)
T PHA02792 331 GATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVV--EDDDNIINIMPLF-PTLSIHESDVLSILKLCKPYIDDINK 405 (631)
T ss_pred CCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchh--hhcCCCCChhHHH-HHHHhccHhHHHHHHHHHhcCCcccc
Confidence 99875 2235668999999999999999999999998 777775 69999 77665554 468899999999999
Q ss_pred CCcccccccccCCcCcCHH--HHHHHhhcCCCCCCCCCCChHHHHHH--hCC--------hhHHHHHHhCCCCHH
Q 010920 173 KPLRFELVIYPSLQDVQPR--AVIALWKAKIDEPKFHQPDPSLTIYD--QAT--------KIRYKFASANEGDKH 235 (497)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~g~~pl~~a~~--~~~--------~~~~~~l~~~~~~~~ 235 (497)
++..+.++++.+...++.. .++...+++++..+..|.|||++|.. .+. ...++++.....+..
T Consensus 406 kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~ 480 (631)
T PHA02792 406 IDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE 480 (631)
T ss_pred ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence 8888999999998766654 44555899999999999999999976 221 344566655555443
No 47
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=166.36 Aligned_cols=132 Identities=13% Similarity=0.091 Sum_probs=107.7
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCC--C-----ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCccc
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGA--S-----LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAK 84 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga--~-----~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~ 84 (497)
.++..|.||||+|++.|+. +.+|+..+. + ++.+|..|+||||+|+..|. .+.
T Consensus 12 ~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~-~~~------------------ 70 (154)
T PHA02736 12 EPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDK-ADP------------------ 70 (154)
T ss_pred hcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCc-hhH------------------
Confidence 4577999999999999984 344433322 2 34568899999999999743 322
Q ss_pred CCCHHHHHHHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHH-CCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 85 RGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+. .|++++ .+|..|.|||| +|+..++.+++++
T Consensus 71 ---~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n--~~~~~g~tpL~-~A~~~~~~~i~~~ 144 (154)
T PHA02736 71 ---QEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME--ILNYAFKTPYY-VACERHDAKMMNI 144 (154)
T ss_pred ---HHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc--cccCCCCCHHH-HHHHcCCHHHHHH
Confidence 234566677777777787 589999999999999999999998 599999 89999999999 9999999999999
Q ss_pred hhhCCCCC
Q 010920 163 VIPCGTAN 170 (497)
Q Consensus 163 Ll~~ga~~ 170 (497)
|+.+|++.
T Consensus 145 Ll~~ga~~ 152 (154)
T PHA02736 145 LRAKGAQC 152 (154)
T ss_pred HHHcCCCC
Confidence 99999875
No 48
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-20 Score=190.14 Aligned_cols=213 Identities=21% Similarity=0.145 Sum_probs=179.4
Q ss_pred hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------- 82 (497)
Q Consensus 10 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------- 82 (497)
.+.||.+|.|+||.|+.+|+.+++++|+++.+-++..|..|.+|||+|+++|+ .++|++|+.++..+|..+-
T Consensus 42 ~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~-~e~vkmll~q~d~~na~~~e~~tplh 120 (854)
T KOG0507|consen 42 HNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGN-LEIVKMLLLQTDILNAVNIENETPLH 120 (854)
T ss_pred ccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCc-chHHHHHHhcccCCCcccccCcCccc
Confidence 35678999999999999999999999999999999999999999999999966 9999999999977777554
Q ss_pred --ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcc------cccccccCCCCHHHHHhhhc
Q 010920 83 --AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYF------CGWLREFYGPSFLEALAPQL 154 (497)
Q Consensus 83 --~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i------~~~~~~~~G~T~Lh~~A~~~ 154 (497)
+..||.+++.+|+++|+++-.+|..+.|+|.+|++.|..++|++|++....+ ....++-.+.+||| .|+++
T Consensus 121 laaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH-laakn 199 (854)
T KOG0507|consen 121 LAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH-LAAKN 199 (854)
T ss_pred hhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc-hhhhc
Confidence 9999999999999999999999999999999999999999999999762211 11256778899999 99999
Q ss_pred CCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHH--HHhhcCCCCCCCCCCChHHHHHHhCChhHHH
Q 010920 155 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI--ALWKAKIDEPKFHQPDPSLTIYDQATKIRYK 225 (497)
Q Consensus 155 ~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~ 225 (497)
|+.++++.|+..|.+++.... --+++|.+...+....+. .-.+......+.+|+|+|....+.......+
T Consensus 200 gh~~~~~~ll~ag~din~~t~-~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~e 271 (854)
T KOG0507|consen 200 GHVECMQALLEAGFDINYTTE-DGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYE 271 (854)
T ss_pred chHHHHHHHHhcCCCcccccc-cchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhh
Confidence 999999999999999988875 556666666555554443 3366777789999999998777765533333
No 49
>PHA02792 ankyrin-like protein; Provisional
Probab=99.83 E-value=9.5e-20 Score=187.73 Aligned_cols=216 Identities=12% Similarity=0.040 Sum_probs=169.2
Q ss_pred hcCCCchHHHHHHH-cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 13 QRQSKDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~-~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
.|-+|.+++|+-+. .|+.++|++|+++||++|.++..|.||||+|+..+++.|++++|+++||+++..+.
T Consensus 67 ~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~ 146 (631)
T PHA02792 67 KNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQ 146 (631)
T ss_pred CccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhh
Confidence 36688889987665 78999999999999999999999999999998766789999999999998543111
Q ss_pred ------------------------------------ccCC-------CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920 83 ------------------------------------AKRG-------LEPTVRLLLSCGANALVRNDDCHTALGVARIKG 119 (497)
Q Consensus 83 ------------------------------------~~~g-------~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g 119 (497)
+..+ +.+++++|+++|++++..|..|.||||+|+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~ 226 (631)
T PHA02792 147 ITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC 226 (631)
T ss_pred cccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence 4444 699999999999999999999999999999765
Q ss_pred --CHHHHHHHH---------------------------------------------------------------------
Q 010920 120 --HINVVRAIE--------------------------------------------------------------------- 128 (497)
Q Consensus 120 --~~~~v~~Ll--------------------------------------------------------------------- 128 (497)
..+++++|+
T Consensus 227 ~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 306 (631)
T PHA02792 227 DIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSI 306 (631)
T ss_pred cchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHH
Confidence 445555554
Q ss_pred ----------------------HCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCccc--ccccccC
Q 010920 129 ----------------------SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRF--ELVIYPS 184 (497)
Q Consensus 129 ----------------------~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~--~~~l~~~ 184 (497)
++|+++. + ......++ .|+..++.+++++|+++|++.+..+..+ .+++|.+
T Consensus 307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r-~~~~n~~~-~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A 381 (631)
T PHA02792 307 QDLLSEYVSYHTVYINVIKCMIDEGATLY---R-FKHINKYF-QKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPT 381 (631)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHCCCccc---c-CCcchHHH-HHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHH
Confidence 3344432 1 12455677 7889999999999999999987766433 4667654
Q ss_pred CcCcCH-----HHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920 185 LQDVQP-----RAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD 233 (497)
Q Consensus 185 ~~~~~~-----~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~ 233 (497)
...... ..++...+++++..+..|.||||+|+..++.+.+++|...+.+
T Consensus 382 ~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD 435 (631)
T PHA02792 382 LSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD 435 (631)
T ss_pred HHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC
Confidence 433322 2233447899999999999999999999999999999877654
No 50
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-20 Score=184.00 Aligned_cols=168 Identities=24% Similarity=0.253 Sum_probs=143.4
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----------
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------- 82 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------- 82 (497)
|.+|.|+||-++...+.+||++|+++|+++|..|..|+||||.|+.- +|+.++++|+++|+++-..+.
T Consensus 70 n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc-g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ 148 (527)
T KOG0505|consen 70 NVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC-GYLNIVEYLIQHGANLLAVNSDGNMPYDLAED 148 (527)
T ss_pred CCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc-ccHHHHHHHHHhhhhhhhccCCCCCccccccC
Confidence 45999999999999999999999999999999999999999999998 669999999999998666544
Q ss_pred -----------ccCC-------------CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccc
Q 010920 83 -----------AKRG-------------LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL 138 (497)
Q Consensus 83 -----------~~~g-------------~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~ 138 (497)
...| -..=+...+..|...+..+..|.|.||.|+.+|..++.++|+..|.+++ +
T Consensus 149 ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~--~ 226 (527)
T KOG0505|consen 149 EATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVN--I 226 (527)
T ss_pred cchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcc--c
Confidence 0011 0111333445788888888889999999999999999999999999999 9
Q ss_pred cccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920 139 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL 185 (497)
Q Consensus 139 ~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~ 185 (497)
+|.+|+|||| +|+..+..+++++|+.+|++.+.....+.+++..+.
T Consensus 227 ~D~dgWtPlH-AAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d 272 (527)
T KOG0505|consen 227 KDYDGWTPLH-AAAHWGQEDACELLVEHGADMDAKTKMGETPLDVAD 272 (527)
T ss_pred ccccCCCccc-HHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence 9999999999 999999999999999999998776665666555444
No 51
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.82 E-value=9.2e-20 Score=200.05 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=164.8
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----ccCCCH
Q 010920 15 QSKDELLYQWVIAGDVDAIRALRSQ--GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----AKRGLE 88 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~--ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----~~~g~~ 88 (497)
..++++|+.|++.|+.+.|+.+++. +.++|..|..|+||||+||..+++.+++++|+++|+..+..+. +..+..
T Consensus 15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~ 94 (743)
T TIGR00870 15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYV 94 (743)
T ss_pred CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccH
Confidence 4678899999999999999999998 8999999999999999544445779999999999972111111 444444
Q ss_pred HHHHHHH----hCCCC------Cc----ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc--------------
Q 010920 89 PTVRLLL----SCGAN------AL----VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-------------- 140 (497)
Q Consensus 89 ~~v~~Ll----~~ga~------~~----~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-------------- 140 (497)
+.++.++ ..+.+ ++ ..+..|.||||+|+.+|+.++|++|+++|++++ .++
T Consensus 95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~--~~~~~~~~~~~~~~~~~ 172 (743)
T TIGR00870 95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP--ARACGDFFVKSQGVDSF 172 (743)
T ss_pred HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC--cCcCCchhhcCCCCCcc
Confidence 4444443 33321 11 123579999999999999999999999999998 332
Q ss_pred cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcC-----------HHHHHHHhhcCC-------C
Q 010920 141 FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ-----------PRAVIALWKAKI-------D 202 (497)
Q Consensus 141 ~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~l~~~~~-------~ 202 (497)
.+|.|||| .|+..++.+++++|+++|++.+..+..+.+++|.+...+. ...++...++.. +
T Consensus 173 ~~g~tpL~-~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~ 251 (743)
T TIGR00870 173 YHGESPLN-AAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV 251 (743)
T ss_pred cccccHHH-HHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence 36999999 8999999999999999999988888889999998876641 122333333333 5
Q ss_pred CCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920 203 EPKFHQPDPSLTIYDQATKIRYKFASA 229 (497)
Q Consensus 203 ~~~~~g~~pl~~a~~~~~~~~~~~l~~ 229 (497)
.+|..|.|||+.|+..++.+.++++.+
T Consensus 252 i~N~~g~TPL~~A~~~g~~~l~~lLL~ 278 (743)
T TIGR00870 252 ILNHQGLTPLKLAAKEGRIVLFRLKLA 278 (743)
T ss_pred hcCCCCCCchhhhhhcCCccHHHHHHH
Confidence 679999999999999999999988875
No 52
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.82 E-value=8.3e-20 Score=201.62 Aligned_cols=138 Identities=20% Similarity=0.119 Sum_probs=126.9
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------c
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------A 83 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------~ 83 (497)
+.+|..|.||||+||..|+.+++++|+++|+++|.+|.+|.||||+|+.. +|.+++++|++.++..+..+. +
T Consensus 552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~-g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa 630 (823)
T PLN03192 552 DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA-KHHKIFRILYHFASISDPHAAGDLLCTAA 630 (823)
T ss_pred CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh-CCHHHHHHHHhcCcccCcccCchHHHHHH
Confidence 34567999999999999999999999999999999999999999999998 569999999998877665443 8
Q ss_pred cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCC-CCHHHHHhh
Q 010920 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG-PSFLEALAP 152 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G-~T~Lh~~A~ 152 (497)
..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++ ..|..| .||++ .+.
T Consensus 631 ~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~--~~~~~g~~t~~~-l~~ 697 (823)
T PLN03192 631 KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD--KANTDDDFSPTE-LRE 697 (823)
T ss_pred HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CCCCCCCCCHHH-HHH
Confidence 8999999999999999999999999999999999999999999999999999 788888 99999 553
No 53
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.81 E-value=8.1e-20 Score=170.42 Aligned_cols=151 Identities=15% Similarity=0.201 Sum_probs=127.8
Q ss_pred CccccCCCCChHHHHHHHhCCcHHHHHHHHHcC-CCCCCcCc--------------ccCCCHHHHHHHHhCCCCCccc-C
Q 010920 42 SLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRP--------------AKRGLEPTVRLLLSCGANALVR-N 105 (497)
Q Consensus 42 ~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~g-a~~~~~~~--------------~~~g~~~~v~~Ll~~ga~~~~~-~ 105 (497)
-+|..|.+|+|+||||+.++| +++|+.||+.| +++|.++. -...+.++|+.|.+.| |+|.+ .
T Consensus 260 vVNlaDsNGNTALHYsVSHaN-F~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAs 337 (452)
T KOG0514|consen 260 VVNLADSNGNTALHYAVSHAN-FDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKAS 337 (452)
T ss_pred HhhhhcCCCCeeeeeeecccc-hHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhh
Confidence 368899999999999999988 99999999986 68998887 3345677788887776 67776 4
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920 106 DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL 185 (497)
Q Consensus 106 ~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~ 185 (497)
..|+|+||+|+++|+.++|+.||..|+|+| ++|.+|.|+|+ .|+..||++|+++|+...-
T Consensus 338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVN--iQDdDGSTALM-CA~EHGhkEivklLLA~p~----------------- 397 (452)
T KOG0514|consen 338 QHGQTALMLAVSHGRVDMVKALLACGADVN--IQDDDGSTALM-CAAEHGHKEIVKLLLAVPS----------------- 397 (452)
T ss_pred hhcchhhhhhhhcCcHHHHHHHHHccCCCc--cccCCccHHHh-hhhhhChHHHHHHHhccCc-----------------
Confidence 679999999999999999999999999999 99999999999 8999999999999997541
Q ss_pred cCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHH
Q 010920 186 QDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFA 227 (497)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l 227 (497)
.++...|.+|.|+|..|.+.++.++.-++
T Consensus 398 -------------cd~sLtD~DgSTAl~IAleagh~eIa~ml 426 (452)
T KOG0514|consen 398 -------------CDISLTDVDGSTALSIALEAGHREIAVML 426 (452)
T ss_pred -------------ccceeecCCCchhhhhHHhcCchHHHHHH
Confidence 33444556788888888888887776554
No 54
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.80 E-value=1e-18 Score=167.45 Aligned_cols=124 Identities=21% Similarity=0.155 Sum_probs=92.8
Q ss_pred cCCCch-HHHHHHHcCCHHHHHHHHHcCCCccccC----CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCH
Q 010920 14 RQSKDE-LLYQWVIAGDVDAIRALRSQGASLEWMD----KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLE 88 (497)
Q Consensus 14 ~~~G~T-~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d----~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~ 88 (497)
|..|.| +||.|++.|+.+++++|+++|+++|.++ ..|.||||+|+..|+ .+++++|+++||+++
T Consensus 29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~-~eivklLL~~GADVN---------- 97 (300)
T PHA02884 29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDN-DDAAKLLIRYGADVN---------- 97 (300)
T ss_pred CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCcC----------
Confidence 445655 6677777799999999999999999874 589999999999844 666666666665554
Q ss_pred HHHHHHHhCCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920 89 PTVRLLLSCGANALVR-NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP 165 (497)
Q Consensus 89 ~~v~~Ll~~ga~~~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~ 165 (497)
.+ +..|.||||+|+..++.+++++|+.+|++++ .+|..|.|||| .|+..++..++.++..
T Consensus 98 --------------~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin--~kd~~G~TpL~-~A~~~~~~~~~~~~~~ 158 (300)
T PHA02884 98 --------------RYAEEAKITPLYISVLHGCLKCLEILLSYGADIN--IQTNDMVTPIE-LALMICNNFLAFMICD 158 (300)
T ss_pred --------------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHhCChhHHHHhcC
Confidence 43 3457777777777777777777777777777 67777777777 6776666666655543
No 55
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.79 E-value=5.4e-20 Score=160.31 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=122.9
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
+.+|..+++.|+-.|+...+..+|..|+..|..+..+.+|+++++.. .|++.+-.|.+.. +|..|. +.
T Consensus 93 ~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq-l~L~~~~~~~~n~--VN~~De~GfTpLiWAaa 169 (296)
T KOG0502|consen 93 DPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ-LHLDVVDLLVNNK--VNACDEFGFTPLIWAAA 169 (296)
T ss_pred CchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH-HHHHHHHHHhhcc--ccCccccCchHhHHHHh
Confidence 45688888888888888888888888888888888888888888886 6677766666543 333333 77
Q ss_pred CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920 85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 164 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll 164 (497)
.|+..+|++||+.||+++...++..|+|++|++.|..++|++|+.++.|+| +.|-+|.|||. +|++.++.+|++.|+
T Consensus 170 ~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN--vyDwNGgTpLl-yAvrgnhvkcve~Ll 246 (296)
T KOG0502|consen 170 KGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN--VYDWNGGTPLL-YAVRGNHVKCVESLL 246 (296)
T ss_pred cCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc--eeccCCCceee-eeecCChHHHHHHHH
Confidence 788888888888888888888888888888888888888888888888888 78888888888 888888888888888
Q ss_pred hCCCCCCCCC
Q 010920 165 PCGTANPSKP 174 (497)
Q Consensus 165 ~~ga~~~~~~ 174 (497)
..|++....+
T Consensus 247 ~sGAd~t~e~ 256 (296)
T KOG0502|consen 247 NSGADVTQED 256 (296)
T ss_pred hcCCCccccc
Confidence 8887765444
No 56
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.77 E-value=9.5e-19 Score=158.38 Aligned_cols=139 Identities=20% Similarity=0.167 Sum_probs=113.9
Q ss_pred chhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCH
Q 010920 9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLE 88 (497)
Q Consensus 9 ~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~ 88 (497)
|.++-|..|.+|||+||+.||..+|+.||.+|+.+|..+....||||+|+.+ +| .
T Consensus 26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah-gh------------------------r 80 (448)
T KOG0195|consen 26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH-GH------------------------R 80 (448)
T ss_pred ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc-cc------------------------H
Confidence 3344566899999999999999999999999999999998889999999998 43 4
Q ss_pred HHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCC
Q 010920 89 PTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT 168 (497)
Q Consensus 89 ~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga 168 (497)
++|+.||+..+|+|..+..|+|||||||..|...+.+-|+..|+.++ +.+++|.|||. .|.-.-...+.++--++|-
T Consensus 81 divqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~--icnk~g~tpld-kakp~l~~~l~e~aek~gq 157 (448)
T KOG0195|consen 81 DIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN--ICNKKGMTPLD-KAKPMLKNTLLEIAEKHGQ 157 (448)
T ss_pred HHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee--ecccCCCCchh-hhchHHHHHHHHHHHHhCC
Confidence 55555556667777889999999999999999999999999999999 89999999999 6644333344444456776
Q ss_pred CCCCCCc
Q 010920 169 ANPSKPL 175 (497)
Q Consensus 169 ~~~~~~~ 175 (497)
..+..++
T Consensus 158 ~~nripf 164 (448)
T KOG0195|consen 158 SPNRIPF 164 (448)
T ss_pred CCCcccc
Confidence 6665554
No 57
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.73 E-value=1.8e-17 Score=139.40 Aligned_cols=139 Identities=19% Similarity=0.086 Sum_probs=106.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL 95 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll 95 (497)
-.--+.+|+..+.+..|+.||+..+ .+|.+|.+|+||||-|+.+ +|++||+.|+
T Consensus 63 p~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn-~h~div~~ll------------------------ 117 (228)
T KOG0512|consen 63 PIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYN-GHLDIVHELL------------------------ 117 (228)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhc-CchHHHHHHH------------------------
Confidence 3346789999999999999999886 4899999999999999997 6566555555
Q ss_pred hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh-CCCCCCCCC
Q 010920 96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP-CGTANPSKP 174 (497)
Q Consensus 96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~-~ga~~~~~~ 174 (497)
..||+++.+...|+||||-|+...+.+++-.|+++|++|+ .......||||+.|-.++....+.+|+. .+...+...
T Consensus 118 ~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVn--A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~n 195 (228)
T KOG0512|consen 118 LSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVN--AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKN 195 (228)
T ss_pred HccCCcccccccCccchhhhhcccchhHHHHHHhccCccc--ccccccchhhHHhhcccchHHHHHHHhhccccChhhhc
Confidence 4555666778899999999999999999999999999999 7878889999944444455666776663 344443333
Q ss_pred cccccccc
Q 010920 175 LRFELVIY 182 (497)
Q Consensus 175 ~~~~~~l~ 182 (497)
...++++.
T Consensus 196 n~eeta~~ 203 (228)
T KOG0512|consen 196 NLEETAFD 203 (228)
T ss_pred CccchHHH
Confidence 33334333
No 58
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.72 E-value=4e-17 Score=145.08 Aligned_cols=107 Identities=17% Similarity=0.073 Sum_probs=89.9
Q ss_pred hhcCCCchHHHHHHHcCCHHH---HHHHHHcCCCccccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCC
Q 010920 12 QQRQSKDELLYQWVIAGDVDA---IRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~---v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~ 87 (497)
.++..|+||||+|+..|+.+. +++|+++|+++|.++ ..|.||||+|+..|+ .+++++|+.
T Consensus 52 ~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~-~~iv~~Ll~--------------- 115 (166)
T PHA02743 52 RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKN-YELAEWLCR--------------- 115 (166)
T ss_pred ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCC-HHHHHHHHh---------------
Confidence 357799999999999988654 899999999999998 589999999999854 555554442
Q ss_pred HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCC
Q 010920 88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP 144 (497)
Q Consensus 88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~ 144 (497)
+.|++++.++..|.||||+|+..++.+++++|+++|++++ .++..|.
T Consensus 116 --------~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~ 162 (166)
T PHA02743 116 --------QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD--DPLSIGL 162 (166)
T ss_pred --------ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcccCCc
Confidence 2466677789999999999999999999999999999998 6666664
No 59
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.72 E-value=8e-17 Score=163.45 Aligned_cols=210 Identities=18% Similarity=0.103 Sum_probs=179.1
Q ss_pred chHHHHHHHcCCHHHHHHHHHcC-------------CCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--
Q 010920 18 DELLYQWVIAGDVDAIRALRSQG-------------ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-- 82 (497)
Q Consensus 18 ~T~Lh~Aa~~g~~~~v~~Ll~~g-------------a~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-- 82 (497)
.+=|.-|++.|+++.+..||+.. -..|..|.+|.|+||+|+.+| +.+++++|+++.+-++..+.
T Consensus 4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng-~~~is~llle~ea~ldl~d~kg 82 (854)
T KOG0507|consen 4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNG-QNQISKLLLDYEALLDLCDTKG 82 (854)
T ss_pred hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcC-chHHHHHHhcchhhhhhhhccC
Confidence 34678899999999999999741 235778999999999999995 59999999999887766554
Q ss_pred -------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC
Q 010920 83 -------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 155 (497)
Q Consensus 83 -------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~ 155 (497)
++.|+.+++++|+.++..+|..+-.|.||||.|++.||.+++.+|+.+|++.- ..|..+.|+|. +|++.|
T Consensus 83 ~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~--i~nns~~t~ld-lA~qfg 159 (854)
T KOG0507|consen 83 ILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF--IRNNSKETVLD-LASRFG 159 (854)
T ss_pred cceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc--ccCcccccHHH-HHHHhh
Confidence 89999999999999999999999999999999999999999999999999998 89999999999 999999
Q ss_pred CHHHHHHhhhCCCC--------CCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHH
Q 010920 156 SRKIWVVVIPCGTA--------NPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYK 225 (497)
Q Consensus 156 ~~~iv~~Ll~~ga~--------~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~ 225 (497)
..++++.|++.... ...+++.+.+++|.+.++++...+..+ .+.+++.....| ++||.|..-+..+++.
T Consensus 160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr 238 (854)
T KOG0507|consen 160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVR 238 (854)
T ss_pred hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhh
Confidence 99999999876322 234455688999999999998887776 555666655544 7899999999999998
Q ss_pred HHHhCCC
Q 010920 226 FASANEG 232 (497)
Q Consensus 226 ~l~~~~~ 232 (497)
++.+...
T Consensus 239 ~ll~~gi 245 (854)
T KOG0507|consen 239 FLLEIGI 245 (854)
T ss_pred HHHhhcc
Confidence 8885543
No 60
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.72 E-value=2.5e-17 Score=171.67 Aligned_cols=216 Identities=21% Similarity=0.186 Sum_probs=183.5
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----------c
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------A 83 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------~ 83 (497)
+.+-+|+|-.||..||.++|++|+.+|+++..+|+.|.+||.+|+-. +|..+|+.|+++.++++.+.. +
T Consensus 754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaata-gh~tvV~~llk~ha~veaQsdrtkdt~lSlac 832 (2131)
T KOG4369|consen 754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATA-GHITVVQDLLKAHADVEAQSDRTKDTMLSLAC 832 (2131)
T ss_pred CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhccc-CchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence 45678999999999999999999999999999999999999999996 679999999999999988755 6
Q ss_pred cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L 163 (497)
..|+.++|++||..|++-..++...+|||.+|..-|..++|.+|+..|+.|+...-.+.|..||+ +|.++|+...++.|
T Consensus 833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm-latmngh~~at~~l 911 (2131)
T KOG4369|consen 833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM-LATMNGHQAATLSL 911 (2131)
T ss_pred CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh-hhhhccccHHHHHH
Confidence 77899999999999999888999999999999999999999999999999985556778999999 99999999999999
Q ss_pred hhCCCCCCCC-CcccccccccCCc--CcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCC
Q 010920 164 IPCGTANPSK-PLRFELVIYPSLQ--DVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE 231 (497)
Q Consensus 164 l~~ga~~~~~-~~~~~~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~ 231 (497)
++.|.+++.. +....+++-.+.- +.++..+++-..+.++..-..|-|||+-++..+..++-.+|...+
T Consensus 912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~g 982 (2131)
T KOG4369|consen 912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAG 982 (2131)
T ss_pred hcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcc
Confidence 9999886532 2223334333332 334444444477888888899999999999998888877777443
No 61
>PHA02741 hypothetical protein; Provisional
Probab=99.71 E-value=1.7e-16 Score=141.70 Aligned_cols=134 Identities=11% Similarity=0.026 Sum_probs=109.1
Q ss_pred ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC--
Q 010920 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-- 120 (497)
Q Consensus 43 ~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~-- 120 (497)
++.+|..|.||||+|+..|+ .+++++|+..... ...|++++.+|..|.||||+|+..|+
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~g~-~~~v~~l~~~~~~------------------~~~ga~in~~d~~g~T~Lh~A~~~g~~~ 74 (169)
T PHA02741 14 IAEKNSEGENFFHEAARCGC-FDIIARFTPFIRG------------------DCHAAALNATDDAGQMCIHIAAEKHEAQ 74 (169)
T ss_pred hhccccCCCCHHHHHHHcCC-HHHHHHHHHHhcc------------------chhhhhhhccCCCCCcHHHHHHHcCChH
Confidence 34578899999999999855 8888887643100 12456778899999999999999999
Q ss_pred --HHHHHHHHHCCCccccccccc-CCCCHHHHHhhhcCCHHHHHHhhh-CCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920 121 --INVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIAL 196 (497)
Q Consensus 121 --~~~v~~Ll~~g~~i~~~~~~~-~G~T~Lh~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l 196 (497)
.+++++|+++|++++ .++. .|.|||| +|+..++.+++++|+. .|++.
T Consensus 75 ~~~~ii~~Ll~~gadin--~~~~~~g~TpLh-~A~~~~~~~iv~~Ll~~~g~~~-------------------------- 125 (169)
T PHA02741 75 LAAEIIDHLIELGADIN--AQEMLEGDTALH-LAAHRRDHDLAEWLCCQPGIDL-------------------------- 125 (169)
T ss_pred HHHHHHHHHHHcCCCCC--CCCcCCCCCHHH-HHHHcCCHHHHHHHHhCCCCCC--------------------------
Confidence 589999999999999 7775 9999999 9999999999999997 47554
Q ss_pred hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920 197 WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 229 (497)
Q Consensus 197 ~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~ 229 (497)
+..+..|.|||++|...+....+++|..
T Consensus 126 -----~~~n~~g~tpL~~A~~~~~~~iv~~L~~ 153 (169)
T PHA02741 126 -----HFCNADNKSPFELAIDNEDVAMMQILRE 153 (169)
T ss_pred -----CcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 3334578899999999998888877754
No 62
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.71 E-value=7.1e-18 Score=175.64 Aligned_cols=223 Identities=18% Similarity=0.148 Sum_probs=149.6
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------- 82 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~-d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------- 82 (497)
+.+++.|.+||.+|+-.||..+|+.|+.+.+++++. |..+.|+|-+||.- +..++|++||.+|++-..++-
T Consensus 784 ehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg-gr~~vvelLl~~gankehrnvsDytPls 862 (2131)
T KOG4369|consen 784 EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG-GRTRVVELLLNAGANKEHRNVSDYTPLS 862 (2131)
T ss_pred cccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC-CcchHHHHHHHhhccccccchhhcCchh
Confidence 345666666666666666666666666666665543 44555666666653 346666666666655433322
Q ss_pred --ccCCCHHHHHHHHhCCCCCcccC--CCCCCHHHHHHHc----------------------------------CCHHHH
Q 010920 83 --AKRGLEPTVRLLLSCGANALVRN--DDCHTALGVARIK----------------------------------GHINVV 124 (497)
Q Consensus 83 --~~~g~~~~v~~Ll~~ga~~~~~~--~~g~T~Lh~A~~~----------------------------------g~~~~v 124 (497)
...|..++|++|+.+|+.||.+. +.|..||++|..+ |+.++|
T Consensus 863 la~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv 942 (2131)
T KOG4369|consen 863 LARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVV 942 (2131)
T ss_pred hhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHH
Confidence 33345555555555555555432 3455555555554 555555
Q ss_pred HHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCc--ccccccccCCcCcCHHHHHHH--hhcC
Q 010920 125 RAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPL--RFELVIYPSLQDVQPRAVIAL--WKAK 200 (497)
Q Consensus 125 ~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~--~~~~~l~~~~~~~~~~~~~~l--~~~~ 200 (497)
.+||.+.+++. .+-+.|.|||+ -++..|+.++-++||..|+|.+..+. ...+++-+....++...+-.+ ..+.
T Consensus 943 ~lLLa~~anve--hRaktgltplm-e~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at 1019 (2131)
T KOG4369|consen 943 FLLLAAQANVE--HRAKTGLTPLM-EMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT 1019 (2131)
T ss_pred HHHHHHhhhhh--hhcccCCcccc-hhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc
Confidence 55555555554 56667999999 89999999999999999999877664 466777777777776555544 4567
Q ss_pred CCCCCCCCCChHHHHHHhCChhHHHHHHhCCCCHHHH
Q 010920 201 IDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQL 237 (497)
Q Consensus 201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~~ 237 (497)
+..++.+|.|+|.+|...+....+.++.+...|.++.
T Consensus 1020 v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~q 1056 (2131)
T KOG4369|consen 1020 VRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQ 1056 (2131)
T ss_pred eecccCCCCcccchhccCCccccchHHhhcccChhhh
Confidence 8899999999999999999999999999887766544
No 63
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.71 E-value=1e-16 Score=127.04 Aligned_cols=86 Identities=23% Similarity=0.351 Sum_probs=72.5
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCC
Q 010920 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGAN 100 (497)
Q Consensus 21 Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~ 100 (497)
||+|++.|+.+++++|++.+.+++. |.||||+|+..|+ .+++++|+ ++|++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~-~~~~~~Ll------------------------~~g~~ 51 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGN-LEIVKLLL------------------------ENGAD 51 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTT-HHHHHHHH------------------------HTTTC
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCC-HHHHHHHH------------------------Hhccc
Confidence 7999999999999999999988866 8899999999844 55555554 55566
Q ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920 101 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 135 (497)
Q Consensus 101 ~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~ 135 (497)
++.+|..|+||||+|+.+|+.+++++|+++|++++
T Consensus 52 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 52 INSQDKNGNTALHYAAENGNLEIVKLLLEHGADVN 86 (89)
T ss_dssp TT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TT
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 66788999999999999999999999999999997
No 64
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.70 E-value=3.7e-16 Score=131.41 Aligned_cols=124 Identities=24% Similarity=0.351 Sum_probs=109.7
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR 92 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~ 92 (497)
.+..|.||||+|++.|+.+++++|++.|.+.+..+..|.||||+|+..++ .+++++|+.
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~-~~~~~~ll~-------------------- 61 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH-LEIVKLLLE-------------------- 61 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC-HHHHHHHHH--------------------
Confidence 46789999999999999999999999999988999999999999999855 555555554
Q ss_pred HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920 93 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 164 (497)
Q Consensus 93 ~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll 164 (497)
.+++++..+..|.||+|+|+..++.+++++|+.++.+++ ..+..|.|||+ .|...++.+++++|+
T Consensus 62 ----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~Ll 126 (126)
T cd00204 62 ----KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN--ARDKDGRTPLH-LAAKNGHLEVVKLLL 126 (126)
T ss_pred ----cCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhcCCHHHHHHhC
Confidence 444556677889999999999999999999999998888 78999999999 899999999999875
No 65
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.69 E-value=1.1e-16 Score=175.81 Aligned_cols=177 Identities=14% Similarity=0.065 Sum_probs=127.9
Q ss_pred hhcCCCchHHH-HHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCC------CCC---
Q 010920 12 QQRQSKDELLY-QWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGAN------INA--- 79 (497)
Q Consensus 12 ~~~~~G~T~Lh-~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~--g~~~~~v~~Ll~~ga~------~~~--- 79 (497)
..|..|+|||| .|+..++.+++++|+++|+ ++..|.||||+|+.. ++...++++|...+.+ ++.
T Consensus 47 ~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~ 122 (743)
T TIGR00870 47 CPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYT 122 (743)
T ss_pred CcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccc
Confidence 34578999999 8889999999999999987 567889999988872 1222334444443322 111
Q ss_pred ------cCc----ccCCCHHHHHHHHhCCCCCcccC--------------CCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920 80 ------YRP----AKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIESHICYFC 135 (497)
Q Consensus 80 ------~~~----~~~g~~~~v~~Ll~~ga~~~~~~--------------~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~ 135 (497)
.+. +..|+.++|++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++
T Consensus 123 ~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin 202 (743)
T TIGR00870 123 SEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL 202 (743)
T ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence 011 77889999999999999888653 358899999999999999999999999988
Q ss_pred ccccccCCCCHHHHHhhhcC---------CHHHHHHhhhCCCCC-------CCCCcccccccccCCcCcCHHHHHH
Q 010920 136 GWLREFYGPSFLEALAPQLM---------SRKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAVIA 195 (497)
Q Consensus 136 ~~~~~~~G~T~Lh~~A~~~~---------~~~iv~~Ll~~ga~~-------~~~~~~~~~~l~~~~~~~~~~~~~~ 195 (497)
.+|..|+|||| +|+..+ ...+.++++..++.. ...+..+.++++.+...++...+..
T Consensus 203 --~~d~~g~T~Lh-~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~l 275 (743)
T TIGR00870 203 --TADSLGNTLLH-LLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRL 275 (743)
T ss_pred --hHhhhhhHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHH
Confidence 78999999999 777765 234556666665543 2334467788888877766544433
No 66
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.69 E-value=1e-16 Score=134.92 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=95.3
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV 91 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v 91 (497)
.+|.+|.||||.|+++||.+||+.|+..||+++.+...|+||||-||.-.| . +++
T Consensus 92 trD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN-~------------------------~va 146 (228)
T KOG0512|consen 92 TRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN-F------------------------EVA 146 (228)
T ss_pred ccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc-h------------------------hHH
Confidence 356799999999999999999999999999999999999999999999855 4 455
Q ss_pred HHHHhCCCCCcccCCCCCCHHHHHHHcCCH-HHHHHHH-HCCCcccccccccCCCCHHHHHhhhcCC
Q 010920 92 RLLLSCGANALVRNDDCHTALGVARIKGHI-NVVRAIE-SHICYFCGWLREFYGPSFLEALAPQLMS 156 (497)
Q Consensus 92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~-~~v~~Ll-~~g~~i~~~~~~~~G~T~Lh~~A~~~~~ 156 (497)
.+||++|+|+|+......||||+|+...+. ..+++|+ .++.+.. .++..+.||+. +|-+.+-
T Consensus 147 ~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg--~~nn~eeta~~-iARRT~~ 210 (228)
T KOG0512|consen 147 GRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG--LKNNLEETAFD-IARRTSM 210 (228)
T ss_pred HHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh--hhcCccchHHH-HHHHhhh
Confidence 555555566667778889999999977665 4567665 4556665 78999999999 7866543
No 67
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.66 E-value=2.9e-16 Score=138.02 Aligned_cols=100 Identities=16% Similarity=0.129 Sum_probs=85.1
Q ss_pred hhcCCCchHHHHHHHcCCH---HHHHHHHHcCCCccccC-CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCC
Q 010920 12 QQRQSKDELLYQWVIAGDV---DAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGL 87 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~---~~v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~ 87 (497)
.+|..|.||||+|+..|+. +++++|++.|+++|.++ ..|.||||+|+..|+ .+++++|+.+
T Consensus 50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~-~~i~~~Ll~~-------------- 114 (154)
T PHA02736 50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQN-YELATWLCNQ-------------- 114 (154)
T ss_pred HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCC-HHHHHHHHhC--------------
Confidence 3578999999999999987 46889999999999998 489999999999854 5555554432
Q ss_pred HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920 88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 135 (497)
Q Consensus 88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~ 135 (497)
.|++++.+|..|.||||+|+..|+.+++++|+.+|++.+
T Consensus 115 ---------~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 115 ---------PGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred ---------CCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 356777789999999999999999999999999998875
No 68
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.65 E-value=1.6e-15 Score=145.47 Aligned_cols=148 Identities=10% Similarity=0.005 Sum_probs=110.1
Q ss_pred CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH
Q 010920 42 SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 121 (497)
Q Consensus 42 ~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~ 121 (497)
.+..+|..|.|+++++|...++.+++++|+++|++++..+. ..+..|.||||+|+..++.
T Consensus 24 ~~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~--------------------~sd~~g~TpLh~Aa~~~~~ 83 (300)
T PHA02884 24 AIKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFP--------------------LSENSKTNPLIYAIDCDND 83 (300)
T ss_pred HhhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc--------------------ccCCCCCCHHHHHHHcCCH
Confidence 35567888887665555544556777766666665553210 1256899999999999999
Q ss_pred HHHHHHHHCCCccccccc-ccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920 122 NVVRAIESHICYFCGWLR-EFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK 200 (497)
Q Consensus 122 ~~v~~Ll~~g~~i~~~~~-~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 200 (497)
+++++|+++|++++ .+ +..|.|||| .|+..++.+++++|+.+|++.+..+..+.++++.+...........+.+..
T Consensus 84 eivklLL~~GADVN--~~~~~~g~TpLh-~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~ 160 (300)
T PHA02884 84 DAAKLLIRYGADVN--RYAEEAKITPLY-ISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE 160 (300)
T ss_pred HHHHHHHHcCCCcC--cccCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc
Confidence 99999999999999 64 568999999 999999999999999999999888877889998887644444333333322
Q ss_pred CCCCCCCCCChHHHH
Q 010920 201 IDEPKFHQPDPSLTI 215 (497)
Q Consensus 201 ~~~~~~~g~~pl~~a 215 (497)
.+..+.+|+.+.
T Consensus 161 ---~~~~~~~~~~~~ 172 (300)
T PHA02884 161 ---ISNFYKHPKKIL 172 (300)
T ss_pred ---ccccccChhhhh
Confidence 455566777654
No 69
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.64 E-value=1.1e-16 Score=145.09 Aligned_cols=134 Identities=24% Similarity=0.199 Sum_probs=112.4
Q ss_pred HHHcCCHHHHHHHHH-cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCc
Q 010920 24 WVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANAL 102 (497)
Q Consensus 24 Aa~~g~~~~v~~Ll~-~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~ 102 (497)
-|+.|+.--|++.|. ..-|+|.-|..|.+||||||.. +| ..+++.||..|+.+|
T Consensus 7 wcregna~qvrlwld~tehdln~gddhgfsplhwaake-gh------------------------~aivemll~rgarvn 61 (448)
T KOG0195|consen 7 WCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKE-GH------------------------VAIVEMLLSRGARVN 61 (448)
T ss_pred hhhcCCeEEEEEEecCcccccccccccCcchhhhhhhc-cc------------------------HHHHHHHHhcccccc
Confidence 356666666665554 4578999999999999999996 43 455555666667777
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccc
Q 010920 103 VRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIY 182 (497)
Q Consensus 103 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~ 182 (497)
..+....||||+|+..||.++|+.|+++.+|+| ..+..|.|||| +|+..|+..+++-|+..|+..+..+..+.+++.
T Consensus 62 ~tnmgddtplhlaaahghrdivqkll~~kadvn--avnehgntplh-yacfwgydqiaedli~~ga~v~icnk~g~tpld 138 (448)
T KOG0195|consen 62 STNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN--AVNEHGNTPLH-YACFWGYDQIAEDLISCGAAVNICNKKGMTPLD 138 (448)
T ss_pred cccCCCCcchhhhhhcccHHHHHHHHHHhcccc--hhhccCCCchh-hhhhhcHHHHHHHHHhccceeeecccCCCCchh
Confidence 788888999999999999999999999999999 89999999999 999999999999999999988777777777766
Q ss_pred cCC
Q 010920 183 PSL 185 (497)
Q Consensus 183 ~~~ 185 (497)
.+.
T Consensus 139 kak 141 (448)
T KOG0195|consen 139 KAK 141 (448)
T ss_pred hhc
Confidence 554
No 70
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-15 Score=149.06 Aligned_cols=197 Identities=21% Similarity=0.220 Sum_probs=162.2
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHH
Q 010920 20 LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPT 90 (497)
Q Consensus 20 ~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~ 90 (497)
.+.-|+..|..+-|+.|+..|+++|..+.+|.|+||-+|.. .+.+||++|+++|++||..+. +..||..+
T Consensus 43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id-~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i 121 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACID-DNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI 121 (527)
T ss_pred HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhc-ccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence 46677889999999999999999999999999999999998 559999999999999999877 88899999
Q ss_pred HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH--------------------------HHHHHHHCCCcccccccccCCC
Q 010920 91 VRLLLSCGANALVRNDDCHTALGVARIKGHIN--------------------------VVRAIESHICYFCGWLREFYGP 144 (497)
Q Consensus 91 v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~--------------------------~v~~Ll~~g~~i~~~~~~~~G~ 144 (497)
+++|+.+|+++...|..|..|+.++......+ =++..+..|...+ ..+..|.
T Consensus 122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d--~~~~rG~ 199 (527)
T KOG0505|consen 122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELD--ARHARGA 199 (527)
T ss_pred HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccc--ccccccc
Confidence 99999999998888888877776543221111 1233334576666 6666799
Q ss_pred CHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCc--CHHHHHHHhhcCCCCCCCCCCChHHHHHHhCC
Q 010920 145 SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV--QPRAVIALWKAKIDEPKFHQPDPSLTIYDQAT 220 (497)
Q Consensus 145 T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~--~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~ 220 (497)
|+|| +|+.+|+.++.++|+.+|.+....+..+.+++|.+.-=+ ....++..++++.+.....|.+|+.++.+.-.
T Consensus 200 T~lH-vAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~ 276 (527)
T KOG0505|consen 200 TALH-VAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEEL 276 (527)
T ss_pred hHHH-HHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhhH
Confidence 9999 999999999999999999998888888888888766322 34557777999999999999999998877544
No 71
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.61 E-value=2.4e-15 Score=154.79 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=130.9
Q ss_pred hcCCCchHHHHHHH---cCCHHHHHHHHHcCCC-ccc----cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--
Q 010920 13 QRQSKDELLYQWVI---AGDVDAIRALRSQGAS-LEW----MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~---~g~~~~v~~Ll~~ga~-~n~----~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-- 82 (497)
|-..|+|.||.|.. .++.++++.|++.-.. +|. ....|+||||+|+.+.+ .++|++|++.||||+.+-.
T Consensus 139 RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~-~~~V~lLl~~gADV~aRa~G~ 217 (782)
T KOG3676|consen 139 RGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRD-AELVRLLLAAGADVHARACGA 217 (782)
T ss_pred ccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhcc-HHHHHHHHHcCCchhhHhhcc
Confidence 45589999999998 4567999999986321 111 23469999999999955 9999999999999998532
Q ss_pred ------------------------------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Q 010920 83 ------------------------------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 132 (497)
Q Consensus 83 ------------------------------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~ 132 (497)
+..+.++++++|+++|||++.+|..|+|.||..+..-..+.-.+++++|+
T Consensus 218 FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga 297 (782)
T KOG3676|consen 218 FFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGA 297 (782)
T ss_pred ccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 67789999999999999999999999999999999988899999999999
Q ss_pred c--ccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 133 Y--FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 133 ~--i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
+ .. ++|..|.|||. +|+..|..++.+.+++.
T Consensus 298 ~~l~~--v~N~qgLTPLt-LAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 298 NALEH--VRNNQGLTPLT-LAAKLGKKEMFQHILER 330 (782)
T ss_pred Ccccc--ccccCCCChHH-HHHHhhhHHHHHHHHHh
Confidence 9 66 89999999999 99999999999999987
No 72
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.60 E-value=6.5e-15 Score=116.62 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=73.7
Q ss_pred HHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCc
Q 010920 54 LIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 133 (497)
Q Consensus 54 Lh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~ 133 (497)
||+|+.+|+ .+++++|++. +.+++. |.||||+|+.+|+.+++++|+++|++
T Consensus 1 L~~A~~~~~-~~~~~~ll~~------------------------~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~ 51 (89)
T PF12796_consen 1 LHIAAQNGN-LEILKFLLEK------------------------GADINL----GNTALHYAAENGNLEIVKLLLENGAD 51 (89)
T ss_dssp HHHHHHTTT-HHHHHHHHHT------------------------TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC
T ss_pred CHHHHHcCC-HHHHHHHHHC------------------------cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc
Confidence 789999854 6666655554 444443 88999999999999999999999999
Q ss_pred ccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCC
Q 010920 134 FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSK 173 (497)
Q Consensus 134 i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~ 173 (497)
++ .+|..|+|||| .|+..++.+++++|+++|++.+.+
T Consensus 52 ~~--~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 52 IN--SQDKNGNTALH-YAAENGNLEIVKLLLEHGADVNIR 88 (89)
T ss_dssp TT---BSTTSSBHHH-HHHHTTHHHHHHHHHHTTT-TTSS
T ss_pred cc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCc
Confidence 99 89999999999 999999999999999999987654
No 73
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.55 E-value=5.1e-14 Score=131.33 Aligned_cols=132 Identities=23% Similarity=0.285 Sum_probs=116.5
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR 92 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~ 92 (497)
++..+.+++|.++..+..+++++|+..|++++.++..|.||||+|+..|+. ..++.++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~--------------------~~~~~~~~~ 128 (235)
T COG0666 69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP--------------------PEGNIEVAK 128 (235)
T ss_pred CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc--------------------ccchHHHHH
Confidence 355689999999999999999999999999999999999999999998441 123456666
Q ss_pred HHHhCCC---CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCC
Q 010920 93 LLLSCGA---NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG 167 (497)
Q Consensus 93 ~Ll~~ga---~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g 167 (497)
+|++.|+ ..+.+|..|.||||+|+..|+.+++++|++.|++++ ..+..|.|+|+ .|+..++.++++.|+..+
T Consensus 129 ~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 129 LLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALD-PAAKNGRIELVKLLLDKG 203 (235)
T ss_pred HHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchh-hhcccchHHHHHHHHhcC
Confidence 6666666 455679999999999999999999999999999999 78999999999 999999999999999977
No 74
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.55 E-value=1.7e-14 Score=108.67 Aligned_cols=103 Identities=22% Similarity=0.262 Sum_probs=86.1
Q ss_pred chHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhC
Q 010920 18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSC 97 (497)
Q Consensus 18 ~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ 97 (497)
+--+++++++|.++-|+-.+..|.++|..- .|+||||||+-.|. .+++ ++|+..
T Consensus 3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQ-l~il------------------------efli~i 56 (117)
T KOG4214|consen 3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQ-LSIL------------------------EFLISI 56 (117)
T ss_pred chhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcch-HHHH------------------------HHHHHh
Confidence 346789999999999999999998887665 89999999998854 4444 445555
Q ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHH
Q 010920 98 GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE 148 (497)
Q Consensus 98 ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh 148 (497)
|++++.+|++|.|||..|+-.||.++|++|++.|++-. ....+|.+.+.
T Consensus 57 GA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt--~~~PdG~~~~e 105 (117)
T KOG4214|consen 57 GANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRT--IHAPDGTALIE 105 (117)
T ss_pred ccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccc--eeCCCchhHHh
Confidence 66667789999999999999999999999999999987 78888888777
No 75
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.48 E-value=1.3e-12 Score=109.67 Aligned_cols=124 Identities=22% Similarity=0.268 Sum_probs=100.6
Q ss_pred ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHH
Q 010920 45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124 (497)
Q Consensus 45 ~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v 124 (497)
.+|..|.||||+|+..|. .+++++|+++ +.+.+..+..|.||||+|+..++.+++
T Consensus 2 ~~~~~g~t~l~~a~~~~~-~~~i~~li~~------------------------~~~~~~~~~~g~~~l~~a~~~~~~~~~ 56 (126)
T cd00204 2 ARDEDGRTPLHLAASNGH-LEVVKLLLEN------------------------GADVNAKDNDGRTPLHLAAKNGHLEIV 56 (126)
T ss_pred CcCcCCCCHHHHHHHcCc-HHHHHHHHHc------------------------CCCCCccCCCCCcHHHHHHHcCCHHHH
Confidence 456789999999999844 5555555554 444456788999999999999999999
Q ss_pred HHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCC
Q 010920 125 RAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEP 204 (497)
Q Consensus 125 ~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 204 (497)
++|++.+++++ ..+..|.||+| .|+..++.+++++|+.++.+. ...
T Consensus 57 ~~ll~~~~~~~--~~~~~~~~~l~-~a~~~~~~~~~~~L~~~~~~~-------------------------------~~~ 102 (126)
T cd00204 57 KLLLEKGADVN--ARDKDGNTPLH-LAARNGNLDVVKLLLKHGADV-------------------------------NAR 102 (126)
T ss_pred HHHHHcCCCcc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCCC-------------------------------ccc
Confidence 99999998888 78899999999 999999999999999988333 333
Q ss_pred CCCCCChHHHHHHhCChhHHHHH
Q 010920 205 KFHQPDPSLTIYDQATKIRYKFA 227 (497)
Q Consensus 205 ~~~g~~pl~~a~~~~~~~~~~~l 227 (497)
+..+.+|++.+...+....++++
T Consensus 103 ~~~~~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 103 DKDGRTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred CCCCCCHHHHHHhcCCHHHHHHh
Confidence 45677888888888777666654
No 76
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.46 E-value=4.2e-13 Score=122.02 Aligned_cols=124 Identities=20% Similarity=0.216 Sum_probs=110.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL 95 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll 95 (497)
.-..||..++..|+.+-...||+.--.+|.+|..|.|+|+.|+..|+ .++|++||++|+|+|..
T Consensus 11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGn-l~~v~lll~~gaDvN~~--------------- 74 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGN-LTLVELLLELGADVNDK--------------- 74 (396)
T ss_pred chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCc-HHHHHHHHHhCCCcCcc---------------
Confidence 45679999999999999999998755689999999999999999987 88888888888888752
Q ss_pred hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
++..++||||+|+..|+.++.++|++.|+... ..|.-|+|+-. .|+.-|+-++|.++-.+
T Consensus 75 --------qhg~~YTpLmFAALSGn~dvcrllldaGa~~~--~vNsvgrTAaq-mAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 75 --------QHGTLYTPLMFAALSGNQDVCRLLLDAGARMY--LVNSVGRTAAQ-MAAFVGHHECVAIINNH 134 (396)
T ss_pred --------cccccccHHHHHHHcCCchHHHHHHhccCccc--cccchhhhHHH-HHHHhcchHHHHHHhcc
Confidence 57789999999999999999999999999998 89999999999 89999999998865443
No 77
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.45 E-value=1.8e-13 Score=97.15 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=46.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHH
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI 71 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll 71 (497)
|.||||+|++.|+.+++++|+++|+++|.+|.+|.||||+|+.+| +.+++++||
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g-~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNG-NIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT--HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcc-CHHHHHHHC
Confidence 789999999999999999999999999999999999999999985 599999986
No 78
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.44 E-value=5.6e-13 Score=143.42 Aligned_cols=103 Identities=29% Similarity=0.382 Sum_probs=89.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCC
Q 010920 19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCG 98 (497)
Q Consensus 19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~g 98 (497)
+.|+.|+..|+.++|++|++.|+++|.+|..|.||||+|+..|+ .+++++| +++|
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~-~eiv~~L------------------------L~~G 138 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGH-VQVVRVL------------------------LEFG 138 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCC-HHHHHHH------------------------HHCC
Confidence 35899999999999999999999999999999999999999843 5555554 4555
Q ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-------CCcccccccccCCCCHHH
Q 010920 99 ANALVRNDDCHTALGVARIKGHINVVRAIESH-------ICYFCGWLREFYGPSFLE 148 (497)
Q Consensus 99 a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~-------g~~i~~~~~~~~G~T~Lh 148 (497)
++++.+|..|.||||+|+..|+.+++++|+.+ |++.+ ..+..|.+|+.
T Consensus 139 advn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~--~~~~~g~~~~~ 193 (664)
T PTZ00322 139 ADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAK--PDSFTGKPPSL 193 (664)
T ss_pred CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCC--ccccCCCCccc
Confidence 66677899999999999999999999999998 88887 67787887777
No 79
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.6e-14 Score=95.93 Aligned_cols=53 Identities=42% Similarity=0.990 Sum_probs=49.8
Q ss_pred cccccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccccccccceeEeee
Q 010920 444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
.+|.||+|.+.+.+++-||||++|+.|..++++ ..+.||+||++|...|+.|+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 599999999999999999999999999999998 67899999999999998885
No 80
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.39 E-value=7.8e-13 Score=99.83 Aligned_cols=83 Identities=17% Similarity=0.055 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCC
Q 010920 88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG 167 (497)
Q Consensus 88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g 167 (497)
.+-|+-.+..|.++|.. ..|++|||+|+-+|..+++++|+..|++++ .+|++|.|||. .|+..||.++|++|+++|
T Consensus 15 ~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~--~kDKygITPLL-sAvwEGH~~cVklLL~~G 90 (117)
T KOG4214|consen 15 IDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQ--DKDKYGITPLL-SAVWEGHRDCVKLLLQNG 90 (117)
T ss_pred HHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccC--CccccCCcHHH-HHHHHhhHHHHHHHHHcC
Confidence 44444444455555544 379999999999999999999999999999 89999999999 999999999999999999
Q ss_pred CCCCCCC
Q 010920 168 TANPSKP 174 (497)
Q Consensus 168 a~~~~~~ 174 (497)
++.....
T Consensus 91 Adrt~~~ 97 (117)
T KOG4214|consen 91 ADRTIHA 97 (117)
T ss_pred cccceeC
Confidence 9865433
No 81
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.38 E-value=3.4e-12 Score=131.92 Aligned_cols=193 Identities=14% Similarity=0.087 Sum_probs=145.8
Q ss_pred chHHHHHHHcCCHHHHHHHHHcC---------CCccccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCCCCcCcccCC
Q 010920 18 DELLYQWVIAGDVDAIRALRSQG---------ASLEWMDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPAKRG 86 (497)
Q Consensus 18 ~T~Lh~Aa~~g~~~~v~~Ll~~g---------a~~n~~d~~G~TpLh~Aa~~--g~~~~~v~~Ll~~ga~~~~~~~~~~g 86 (497)
+.++..|...+..+.+..|+..+ .+++.+-..|+|.||.|..+ .+|.++++.|++.-.
T Consensus 102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p----------- 170 (782)
T KOG3676|consen 102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFP----------- 170 (782)
T ss_pred hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhH-----------
Confidence 36888899999999998888765 46677777899999999994 345577777775421
Q ss_pred CHHHHHHHHhCCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHCCCccccc-------cc--------------ccCCC
Q 010920 87 LEPTVRLLLSCGANALV-RNDDCHTALGVARIKGHINVVRAIESHICYFCGW-------LR--------------EFYGP 144 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~~~~-~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~-------~~--------------~~~G~ 144 (497)
-|+. ++.. -...|.||||+|+.+.+.++|++|++.||||+.. .. -+.|.
T Consensus 171 ------~lin---d~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGE 241 (782)
T KOG3676|consen 171 ------KLIN---DIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGE 241 (782)
T ss_pred ------HHhh---hhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeecc
Confidence 1111 1111 2367899999999999999999999999988751 00 23578
Q ss_pred CHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcC--cCHHHHHHHhhcC--CCCCCCCCCChHHHHHHhCC
Q 010920 145 SFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD--VQPRAVIALWKAK--IDEPKFHQPDPSLTIYDQAT 220 (497)
Q Consensus 145 T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~~--~~~~~~~g~~pl~~a~~~~~ 220 (497)
.||- .||..++.+|+++|+++|||.+..+..+.+.+|.-+-. ......+...++. ...++..|-|||.+|+..+.
T Consensus 242 yPLS-fAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk 320 (782)
T KOG3676|consen 242 YPLS-FAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGK 320 (782)
T ss_pred CchH-HHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhh
Confidence 8999 88888999999999999999999888888888875522 2233444556666 77899999999999999999
Q ss_pred hhHHHHHHhCC
Q 010920 221 KIRYKFASANE 231 (497)
Q Consensus 221 ~~~~~~l~~~~ 231 (497)
.+.++.+.+.+
T Consensus 321 ~emf~~ile~~ 331 (782)
T KOG3676|consen 321 KEMFQHILERR 331 (782)
T ss_pred HHHHHHHHHhh
Confidence 99988877653
No 82
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.37 E-value=5.4e-13 Score=95.20 Aligned_cols=55 Identities=27% Similarity=0.220 Sum_probs=33.3
Q ss_pred HHhCC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHh
Q 010920 94 LLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA 151 (497)
Q Consensus 94 Ll~~g-a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A 151 (497)
||++| ++++.+|..|+||||+|+.+|+.+++++|+..|++++ .+|..|+|||| +|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~--~~d~~G~Tpl~-~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN--AKDKDGQTPLH-YA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-----TTS--HHH-H-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC--CCcCCCCCHHH-hC
Confidence 56777 8899999999999999999999999999999999999 99999999999 65
No 83
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.33 E-value=1.4e-12 Score=92.98 Aligned_cols=55 Identities=36% Similarity=0.428 Sum_probs=27.4
Q ss_pred HHHcC-CCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHH
Q 010920 36 LRSQG-ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 114 (497)
Q Consensus 36 Ll~~g-a~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~ 114 (497)
||++| +++|.+|..|+||||+||..|+ .++++ +|++.|++++.+|..|+||||+
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~-~~~v~------------------------~Ll~~g~d~~~~d~~G~Tpl~~ 55 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGH-SEVVR------------------------LLLQNGADPNAKDKDGQTPLHY 55 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT--HHHHH------------------------HHHHCT--TT---TTS--HHHH
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCc-HHHHH------------------------HHHHCcCCCCCCcCCCCCHHHh
Confidence 67888 8999999999999999999844 55554 5555666777899999999999
Q ss_pred H
Q 010920 115 A 115 (497)
Q Consensus 115 A 115 (497)
|
T Consensus 56 A 56 (56)
T PF13857_consen 56 A 56 (56)
T ss_dssp -
T ss_pred C
Confidence 7
No 84
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.32 E-value=4.6e-12 Score=115.34 Aligned_cols=101 Identities=26% Similarity=0.315 Sum_probs=83.3
Q ss_pred chhhhc-hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcC
Q 010920 4 SLNSMN-QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYR 81 (497)
Q Consensus 4 ~l~~~~-~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~-d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~ 81 (497)
+|.... .+++|.+|.|+|..|+..|+.++|++||+.|+|+|.. +..++||||+|+..|+ .++.+
T Consensus 31 LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn-~dvcr------------- 96 (396)
T KOG1710|consen 31 LLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN-QDVCR------------- 96 (396)
T ss_pred HHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC-chHHH-------------
Confidence 344433 6678999999999999999999999999999999876 4568999999999977 45554
Q ss_pred cccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Q 010920 82 PAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 129 (497)
Q Consensus 82 ~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~ 129 (497)
+|++.|+.++..|.-|+|+-.+|+.-||.++|..+-.
T Consensus 97 -----------llldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 97 -----------LLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred -----------HHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence 4555556666788899999999999999999987653
No 85
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.29 E-value=1.6e-11 Score=132.25 Aligned_cols=77 Identities=29% Similarity=0.271 Sum_probs=70.3
Q ss_pred CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
+.+++++|+++|+++|.+|..|.||||+|+.+|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+.+
T Consensus 94 ~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn--~~d~~G~TpLh-~A~~~g~~~iv~~Ll~~ 170 (664)
T PTZ00322 94 DAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT--LLDKDGKTPLE-LAEENGFREVVQLLSRH 170 (664)
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCcHHHHHHHHhC
Confidence 3566666666777777889999999999999999999999999999999 89999999999 99999999999999998
No 86
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.28 E-value=8.1e-12 Score=88.56 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=46.3
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920 108 CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 164 (497)
Q Consensus 108 g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll 164 (497)
|.||||+|+..|+.+++++|+++|.+++ .+|.+|.|||| +|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din--~~d~~g~t~lh-~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADIN--AQDEDGRTPLH-YAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT---B-TTS--HHH-HHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHccCHHHHHHHC
Confidence 7899999999999999999999999999 78999999999 999999999999986
No 87
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=1.8e-11 Score=119.87 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=99.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCC
Q 010920 19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCG 98 (497)
Q Consensus 19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~g 98 (497)
-.|.-|+..|.+++|+..+..--|+...+..|.||||-|+.. +|.+||++ |++.|
T Consensus 552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa-ghyeIVkF------------------------Li~~g 606 (752)
T KOG0515|consen 552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICA-GHYEIVKF------------------------LIEFG 606 (752)
T ss_pred HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc-chhHHHHH------------------------HHhcC
Confidence 456778999999999999988788888999999999999996 44555555 55556
Q ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHh--hhcCCHHHHHHhhhCC
Q 010920 99 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA--PQLMSRKIWVVVIPCG 167 (497)
Q Consensus 99 a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A--~~~~~~~iv~~Ll~~g 167 (497)
+++|..|.+|+||||.|++.+++.+++.|++.|+-|.. ..-.++.|+.. -+ -..|+..|.+||..-.
T Consensus 607 anVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfA-sTlSDmeTa~e-KCee~eeGY~~CsqyL~~vq 675 (752)
T KOG0515|consen 607 ANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFA-STLSDMETAAE-KCEEMEEGYDQCSQYLYGVQ 675 (752)
T ss_pred CcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEe-eecccccchhh-hcchhhhhHHHHHHHHHHHH
Confidence 67777899999999999999999999999999988752 45667889988 55 3568889999997543
No 88
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.26 E-value=4e-12 Score=88.20 Aligned_cols=48 Identities=35% Similarity=0.953 Sum_probs=42.1
Q ss_pred CcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
+..|.||++...+++++||||.++|..|+.+|.....+||+||++|.+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 458999999999999999999955999999998888899999999975
No 89
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.17 E-value=6.8e-10 Score=103.32 Aligned_cols=128 Identities=21% Similarity=0.206 Sum_probs=100.2
Q ss_pred cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC---
Q 010920 44 EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH--- 120 (497)
Q Consensus 44 n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~--- 120 (497)
...+..+.+++|+++..+. ..++.+|+..|++++.++..|.||||+|+..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 121 (235)
T COG0666 67 AARDLDGRLPLHSAASKGD-------------------------DKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE 121 (235)
T ss_pred ccCCccccCHHHHHHHcCc-------------------------HHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCccc
Confidence 3345557777887777644 455566667777778899999999999999999
Q ss_pred --HHHHHHHHHCCC---cccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHH
Q 010920 121 --INVVRAIESHIC---YFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA 195 (497)
Q Consensus 121 --~~~v~~Ll~~g~---~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~ 195 (497)
.+++++|++.|+ ..+ .+|..|.|||| +|+..|+.+++++|++.|++...+
T Consensus 122 ~~~~~~~~ll~~g~~~~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~ll~~~~~~~~~---------------------- 176 (235)
T COG0666 122 GNIEVAKLLLEAGADLDVNN--LRDEDGNTPLH-WAALNGDADIVELLLEAGADPNSR---------------------- 176 (235)
T ss_pred chHHHHHHHHHcCCCCCCcc--ccCCCCCchhH-HHHHcCchHHHHHHHhcCCCCccc----------------------
Confidence 999999999999 444 67999999999 999999999999999998776554
Q ss_pred HhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 196 LWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 196 l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
+..|.++++.+...+.......+...
T Consensus 177 ---------~~~g~t~l~~a~~~~~~~~~~~l~~~ 202 (235)
T COG0666 177 ---------NSYGVTALDPAAKNGRIELVKLLLDK 202 (235)
T ss_pred ---------ccCCCcchhhhcccchHHHHHHHHhc
Confidence 34566666666666666666666554
No 90
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1e-11 Score=112.79 Aligned_cols=53 Identities=36% Similarity=0.952 Sum_probs=49.9
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeeeC
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 497 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~~ 497 (497)
+....|.||||.+.+++|++|||+++|..|..+|. .||+||+.|...++||++
T Consensus 298 ~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 298 ATRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQYIVRVVRIFRV 350 (350)
T ss_pred hHHHHHHHHhcCCcceEEeecCcEEeehhhccccc----cCchHHHHHHHHHhhhcC
Confidence 34789999999999999999999999999999998 899999999999999975
No 91
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.6e-11 Score=112.42 Aligned_cols=58 Identities=28% Similarity=0.854 Sum_probs=52.4
Q ss_pred CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
+.++..+|+||+...++.+++||+|+++|..|++.+.-+...||+||++|...+.||.
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 3455679999999999999999999999999999998777789999999999998873
No 92
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=3.8e-10 Score=110.70 Aligned_cols=87 Identities=20% Similarity=0.096 Sum_probs=79.0
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
+..|..++|+-.+..--|+...|..|.|+||-|+-.||.+||++|+..|+++| ..|.+|||||| +|+..++.-+++.
T Consensus 558 aLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN--a~DSdGWTPLH-CAASCNnv~~ckq 634 (752)
T KOG0515|consen 558 ALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN--AADSDGWTPLH-CAASCNNVPMCKQ 634 (752)
T ss_pred hhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc--CccCCCCchhh-hhhhcCchHHHHH
Confidence 55677888888887777888899999999999999999999999999999999 89999999999 8999999999999
Q ss_pred hhhCCCCCCC
Q 010920 163 VIPCGTANPS 172 (497)
Q Consensus 163 Ll~~ga~~~~ 172 (497)
|+++|+.+-.
T Consensus 635 LVe~GaavfA 644 (752)
T KOG0515|consen 635 LVESGAAVFA 644 (752)
T ss_pred HHhccceEEe
Confidence 9999987633
No 93
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.92 E-value=1.3e-09 Score=95.55 Aligned_cols=55 Identities=25% Similarity=0.795 Sum_probs=46.3
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc----------------Ccccccccccccc--eeEee
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK----------------KGDCPVCRTKINQ--VIRLY 495 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~----------------~~~Cp~Cr~~i~~--~~~~~ 495 (497)
..+...|+||++...+++.++|||.| |+.|+.+|... ..+||+||.+|.. .+++|
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 44567999999999999999999999 99999998631 3579999999944 66766
No 94
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.7e-10 Score=98.56 Aligned_cols=55 Identities=33% Similarity=0.844 Sum_probs=48.6
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc---Ccccccccccc--cceeEee
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKI--NQVIRLY 495 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i--~~~~~~~ 495 (497)
......|.||+|..+++|++.|||.| |+.|+.+|... +..||+|+..| +..++||
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 55678999999999999999999999 99999999973 46789999888 5678887
No 95
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.3e-09 Score=89.51 Aligned_cols=54 Identities=33% Similarity=0.836 Sum_probs=46.0
Q ss_pred CCCcccccccccCCce--EEeCCCCccchHHHHHHHhccCcccccccccc--cceeEee
Q 010920 441 GSSSSCVICWEAPVEG--ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLY 495 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~--~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i--~~~~~~~ 495 (497)
+....|+|||+.+..- +.+.|||+| |..|++.......+||+||+.| ..+++||
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 3447999999987653 458999999 9999999998888999999888 5688888
No 96
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.7e-09 Score=97.90 Aligned_cols=50 Identities=34% Similarity=0.888 Sum_probs=45.1
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccce
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 491 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~ 491 (497)
+....|.+|++...++..+||||.| |+.|+..|...+..||+||.++...
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCc
Confidence 3446999999999999999999999 9999999999888899999988543
No 97
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.76 E-value=6.1e-09 Score=95.66 Aligned_cols=54 Identities=35% Similarity=0.770 Sum_probs=45.3
Q ss_pred CCcccccccccCCc--------eEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 442 SSSSCVICWEAPVE--------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 442 ~~~~C~iC~~~~~~--------~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
....|+||++...+ .++.+|+|.| |..|+..|...+..||+||.++...++..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence 45699999997543 3567999999 999999999988899999999988776543
No 98
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.75 E-value=5.5e-09 Score=68.18 Aligned_cols=38 Identities=37% Similarity=0.983 Sum_probs=33.6
Q ss_pred cccccccCCce-EEeCCCCccchHHHHHHHhccCcccccc
Q 010920 446 CVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKKGDCPVC 484 (497)
Q Consensus 446 C~iC~~~~~~~-~~~pC~H~~~C~~C~~~~~~~~~~Cp~C 484 (497)
|+||++...++ ++++|||.| |..|+.++.....+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence 89999999998 689999999 999999999888899988
No 99
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.73 E-value=1.1e-08 Score=99.41 Aligned_cols=96 Identities=26% Similarity=0.306 Sum_probs=75.4
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV 91 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v 91 (497)
.++.++...+++|++.|++..++.+.-.|.|++.+|.+.+|+||+||.. +|++++++||+.
T Consensus 501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE-G~v~v~kfl~~~------------------ 561 (622)
T KOG0506|consen 501 PRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE-GHVEVVKFLLNA------------------ 561 (622)
T ss_pred cccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc-CceeHHHHHHHH------------------
Confidence 3456677788888888888888888888888888888888888888887 447777777654
Q ss_pred HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q 010920 92 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 131 (497)
Q Consensus 92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g 131 (497)
.+.+++.+|..|+|||.-|...+|.+++++|-+.-
T Consensus 562 -----~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 562 -----CKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred -----HcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence 23556667888888888888888888888887653
No 100
>PF13606 Ank_3: Ankyrin repeat
Probab=98.73 E-value=1.5e-08 Score=61.70 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=15.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCcc
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGASLE 44 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n 44 (497)
|+||||+||+.|+.++|++||++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 4555555555555555555555555544
No 101
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.72 E-value=6.2e-09 Score=70.04 Aligned_cols=40 Identities=40% Similarity=0.888 Sum_probs=35.4
Q ss_pred ccccccccC---CceEEeCCCCccchHHHHHHHhccCccccccc
Q 010920 445 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR 485 (497)
Q Consensus 445 ~C~iC~~~~---~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr 485 (497)
.|+||++.+ ..++.++|+|.| |..|+..|...+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence 799999976 457788999999 9999999999889999997
No 102
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.72 E-value=2e-08 Score=62.93 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=21.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCccccC
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMD 47 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d 47 (497)
+|.||||+|+..|+.+++++||++|++++.+|
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 36667777777777777777777776666655
No 103
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.3e-09 Score=99.81 Aligned_cols=56 Identities=34% Similarity=0.872 Sum_probs=50.3
Q ss_pred ccCCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 437 VKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 437 ~~~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
..+......|+||.+.+.+.+++||||+++|..|.+.+. +||+||+.|...+++|.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~----~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP----QCPVCRQRIRLVRKRYR 354 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEEchHHHhhCC----CCchhHHHHHHHHHHhc
Confidence 444566679999999999999999999999999999998 89999999999888885
No 104
>PF13606 Ank_3: Ankyrin repeat
Probab=98.69 E-value=2.6e-08 Score=60.67 Aligned_cols=30 Identities=43% Similarity=0.721 Sum_probs=27.0
Q ss_pred CCChHHHHHHHhCCcHHHHHHHHHcCCCCCC
Q 010920 49 EGKTPLIVACMDSGLINVAKTLIELGANINA 79 (497)
Q Consensus 49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~ 79 (497)
+|+||||+||..|+ .+++++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~-~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGN-IEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCC-HHHHHHHHHcCCCCCC
Confidence 58999999999955 9999999999999874
No 105
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.67 E-value=8.7e-08 Score=93.74 Aligned_cols=86 Identities=26% Similarity=0.306 Sum_probs=70.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCC
Q 010920 20 LLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCG 98 (497)
Q Consensus 20 ~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~g 98 (497)
-||-.++.|+.+..-.||..||++|..+. .|.||||+|+..|+ ..-+++|+-+|
T Consensus 136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq-------------------------~~Q~ElL~vYG 190 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQ-------------------------ILQAELLAVYG 190 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccc-------------------------hhhhhHHhhcc
Confidence 58999999999999999999999988875 58999999999865 34456666677
Q ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 010920 99 ANALVRNDDCHTALGVARIKGHINVVRAIESH 130 (497)
Q Consensus 99 a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~ 130 (497)
||++..|..|+||+.+|-..||-++.+-|++.
T Consensus 191 AD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 191 ADPGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred CCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 77778899999999999999998887777653
No 106
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.66 E-value=1.3e-08 Score=105.05 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=72.2
Q ss_pred HHHHHHHc-C-CCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccC-CCC
Q 010920 32 AIRALRSQ-G-ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRN-DDC 108 (497)
Q Consensus 32 ~v~~Ll~~-g-a~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~-~~g 108 (497)
-++-++++ + --.|.+|..|+|+||+|+..+. .+++++||++|++++.+| ..|
T Consensus 32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k-------------------------~~~l~wLlqhGidv~vqD~ESG 86 (1267)
T KOG0783|consen 32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENK-------------------------NSFLRWLLQHGIDVFVQDEESG 86 (1267)
T ss_pred HHHHHHHHhhhhhhhHHHhhccceeeeeeccch-------------------------hHHHHHHHhcCceeeecccccc
Confidence 34545443 2 2368899999999999998733 455555556666666666 469
Q ss_pred CCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHH
Q 010920 109 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE 148 (497)
Q Consensus 109 ~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh 148 (497)
+||||-|+.+|+++++-+||++|+.+. ++|+.|..||.
T Consensus 87 ~taLHRaiyyG~idca~lLL~~g~SL~--i~Dkeglsplq 124 (1267)
T KOG0783|consen 87 YTALHRAIYYGNIDCASLLLSKGRSLR--IKDKEGLSPLQ 124 (1267)
T ss_pred chHhhHhhhhchHHHHHHHHhcCCceE--EecccCCCHHH
Confidence 999999999999999999999999998 99999999999
No 107
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.65 E-value=2e-08 Score=66.28 Aligned_cols=38 Identities=37% Similarity=0.905 Sum_probs=30.5
Q ss_pred cccccccCCceEEeCCCCccchHHHHHHHhccC----cccccc
Q 010920 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK----GDCPVC 484 (497)
Q Consensus 446 C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~----~~Cp~C 484 (497)
|+||++.+.+++.++|||.| |..|+.++.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999 999999999743 469987
No 108
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.58 E-value=7.8e-08 Score=60.24 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=28.7
Q ss_pred CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcC
Q 010920 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYR 81 (497)
Q Consensus 49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~ 81 (497)
+|.||||+|+..| +.+++++|+++|++++.++
T Consensus 1 dG~TpLh~A~~~~-~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRG-HPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTT-CHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHH-HHHHHHHHHHCcCCCCCCC
Confidence 5899999999995 5999999999999998875
No 109
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.51 E-value=4.6e-07 Score=88.80 Aligned_cols=81 Identities=21% Similarity=0.094 Sum_probs=68.3
Q ss_pred ccCCCHHHHHHHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 161 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~ 161 (497)
++.|+.++.--||..||++|..+ ..|.||||+|+..|+..-+++|+-+|+|+. ..|.+|.||+. +|-..||-++.+
T Consensus 141 vRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~--a~d~~GmtP~~-~AR~~gH~~lae 217 (669)
T KOG0818|consen 141 VRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG--AQDSSGMTPVD-YARQGGHHELAE 217 (669)
T ss_pred hhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC--CCCCCCCcHHH-HHHhcCchHHHH
Confidence 45556666666666777777665 579999999999999999999999999999 89999999999 999999988887
Q ss_pred HhhhC
Q 010920 162 VVIPC 166 (497)
Q Consensus 162 ~Ll~~ 166 (497)
.|++.
T Consensus 218 Rl~e~ 222 (669)
T KOG0818|consen 218 RLVEI 222 (669)
T ss_pred HHHHH
Confidence 77653
No 110
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.47 E-value=4.2e-07 Score=90.68 Aligned_cols=91 Identities=24% Similarity=0.295 Sum_probs=74.8
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCC--cc--ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920 20 LLYQWVIAGDVDAIRALRSQGAS--LE--WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL 95 (497)
Q Consensus 20 ~Lh~Aa~~g~~~~v~~Ll~~ga~--~n--~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll 95 (497)
-|..|+...++..+-+||.+|.. +| ..+.+|.|+||+||..|+ +.+.++|+.+|+|+
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gn-Vvl~QLLiWyg~dv------------------ 687 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGN-VVLAQLLIWYGVDV------------------ 687 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcc-hhHHHHHHHhCccc------------------
Confidence 46778888889999999999853 33 345678999999999866 88888888777655
Q ss_pred hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920 96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 135 (497)
Q Consensus 96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~ 135 (497)
-.+|..|+|+|.||-+.|.-+|+.+|+.+|+.-+
T Consensus 688 ------~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 688 ------MARDAHGRTALFYARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred ------eecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence 3578999999999999999999999999997544
No 111
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.44 E-value=7.4e-07 Score=88.60 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=103.3
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCC
Q 010920 21 LYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGAN 100 (497)
Q Consensus 21 Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~ 100 (497)
|..|+..+++--+..+-..|.++-.++.+..|.||||+..|+ -++|+|+|+||. .++
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~-~eivkyildh~p------------~el---------- 926 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGN-GEIVKYILDHGP------------SEL---------- 926 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCC-hHHHHHHHhcCC------------HHH----------
Confidence 566777777777777777888888999999999999999977 888888888864 222
Q ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCC
Q 010920 101 ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG 167 (497)
Q Consensus 101 ~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g 167 (497)
++..|..|.|+||-|+-.++..+.++|++.|+.+. ..|..|.||-. -|-+.+..+++.+|-.+.
T Consensus 927 ld~~de~get~lhkaa~~~~r~vc~~lvdagasl~--ktd~kg~tp~e-raqqa~d~dlaayle~rq 990 (1004)
T KOG0782|consen 927 LDMADETGETALHKAACQRNRAVCQLLVDAGASLR--KTDSKGKTPQE-RAQQAGDPDLAAYLESRQ 990 (1004)
T ss_pred HHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe--ecccCCCChHH-HHHhcCCchHHHHHhhhh
Confidence 23467889999999999999999999999999998 89999999999 899999999999887654
No 112
>PHA02926 zinc finger-like protein; Provisional
Probab=98.43 E-value=8.5e-08 Score=84.87 Aligned_cols=53 Identities=26% Similarity=0.755 Sum_probs=41.7
Q ss_pred CCCCcccccccccCC---------ceEEeCCCCccchHHHHHHHhccC------cccccccccccceeE
Q 010920 440 DGSSSSCVICWEAPV---------EGACVPCGHMAGCMSCLSEIKAKK------GDCPVCRTKINQVIR 493 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~---------~~~~~pC~H~~~C~~C~~~~~~~~------~~Cp~Cr~~i~~~~~ 493 (497)
..++.+|.||+|..- -.++.+|+|.| |..|+..|...+ ..||+||..+...++
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 455679999998642 25778999999 999999999742 459999998875543
No 113
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.39 E-value=2e-07 Score=61.59 Aligned_cols=38 Identities=37% Similarity=0.909 Sum_probs=34.9
Q ss_pred cccccccCCceE-EeCCCCccchHHHHHHHhc--cCcccccc
Q 010920 446 CVICWEAPVEGA-CVPCGHMAGCMSCLSEIKA--KKGDCPVC 484 (497)
Q Consensus 446 C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~--~~~~Cp~C 484 (497)
|+||++...+.+ +++|||.| |..|+.++.. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence 899999999988 88999999 9999999998 55789988
No 114
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.39 E-value=1.8e-07 Score=68.41 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=41.3
Q ss_pred cccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
..|+||.+...+++.+||||.| |..|+.++......||+|+.++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCC
Confidence 4799999999999999999999 9999999998778899999988
No 115
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.39 E-value=2.5e-07 Score=95.78 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=56.8
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCCC
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANIN 78 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~ 78 (497)
++.|.-|+|+||.|+..|...++++||.+|++++.+|. .|+||||-|+..|+ +||+-+||.+|+.+.
T Consensus 46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~-idca~lLL~~g~SL~ 113 (1267)
T KOG0783|consen 46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGN-IDCASLLLSKGRSLR 113 (1267)
T ss_pred hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhch-HHHHHHHHhcCCceE
Confidence 34567899999999999999999999999999999996 59999999999955 777777666665443
No 116
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.38 E-value=2.6e-07 Score=61.99 Aligned_cols=41 Identities=39% Similarity=0.972 Sum_probs=35.2
Q ss_pred ccccccccC---CceEEeCCCCccchHHHHHHHhccCcccccccc
Q 010920 445 SCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 486 (497)
Q Consensus 445 ~C~iC~~~~---~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~ 486 (497)
.|.||++.. ....+++|||.| |..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence 489999887 357888999999 99999999955678999985
No 117
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.37 E-value=3.8e-07 Score=88.98 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=78.4
Q ss_pred CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q 010920 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 126 (497)
Q Consensus 47 d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~ 126 (497)
+.++.-.+++|+..|+ ...++-+.-.|.|++.+|.+.+|+||.|+..|+++++++
T Consensus 503 ~~~~~i~~~~aa~~GD-------------------------~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kf 557 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGD-------------------------LSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKF 557 (622)
T ss_pred cccchhhhhhhhhcCC-------------------------HHHHHHHHHhcccccccccccchhheeecccCceeHHHH
Confidence 3456678899998866 444555555667888899999999999999999999999
Q ss_pred HHHC-CCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCC
Q 010920 127 IESH-ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT 168 (497)
Q Consensus 127 Ll~~-g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga 168 (497)
|++. +.+.+ .+|..|+|||. -|...+|.+++++|-+...
T Consensus 558 l~~~~kv~~~--~kDRw~rtPlD-dA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 558 LLNACKVDPD--PKDRWGRTPLD-DAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred HHHHHcCCCC--hhhccCCCcch-HhHhcCcHHHHHHHHHHhc
Confidence 9975 56777 89999999999 9999999999999987654
No 118
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.32 E-value=1.2e-06 Score=87.62 Aligned_cols=81 Identities=25% Similarity=0.175 Sum_probs=70.0
Q ss_pred CHHHHHHHHhCCCC--Ccc--cCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 87 LEPTVRLLLSCGAN--ALV--RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~--~~~--~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
....+-+||.+|.. +|. .+.+|+|+||+|++.|++.+.++|+-+|+|+. ..|.+|+|+|. ||-+.|..+++.+
T Consensus 636 Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~--~rda~g~t~l~-yar~a~sqec~d~ 712 (749)
T KOG0705|consen 636 DLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM--ARDAHGRTALF-YARQAGSQECIDV 712 (749)
T ss_pred HHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce--ecccCCchhhh-hHhhcccHHHHHH
Confidence 44556677777754 332 46788999999999999999999999999998 89999999999 9999999999999
Q ss_pred hhhCCCCC
Q 010920 163 VIPCGTAN 170 (497)
Q Consensus 163 Ll~~ga~~ 170 (497)
|+.+|.-.
T Consensus 713 llq~gcp~ 720 (749)
T KOG0705|consen 713 LLQYGCPD 720 (749)
T ss_pred HHHcCCCc
Confidence 99999754
No 119
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.32 E-value=1.3e-06 Score=86.74 Aligned_cols=87 Identities=24% Similarity=0.345 Sum_probs=64.1
Q ss_pred hHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHh
Q 010920 19 ELLYQWVIAGDVDAIRALRS--QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLS 96 (497)
Q Consensus 19 T~Lh~Aa~~g~~~~v~~Ll~--~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~ 96 (497)
-|||+++.....+-+..++. .+..++.+|..|.||||+|+..|+ .+.++ +|+.
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~-~~~a~------------------------~Ll~ 76 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGH-VEAAR------------------------ILLS 76 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcC-HHHHH------------------------HHHh
Confidence 35889888877766665443 335678889999999999999844 44444 4445
Q ss_pred CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 010920 97 CGANALVRNDDCHTALGVARIKGHINVVRAIESH 130 (497)
Q Consensus 97 ~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~ 130 (497)
.|+++..+|..|++|||-|+..|+.+++..++.+
T Consensus 77 a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 77 AGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred cCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 5556666889999999999999998887776654
No 120
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.32 E-value=4e-07 Score=61.34 Aligned_cols=43 Identities=44% Similarity=0.990 Sum_probs=35.6
Q ss_pred ccccccccCCceEEe-CCCCccchHHHHHHHhcc-Ccccccccccc
Q 010920 445 SCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKI 488 (497)
Q Consensus 445 ~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i 488 (497)
.|+||++...+.+.+ +|+|.| |..|...|... ...||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence 489999998555544 599999 99999999876 67899999754
No 121
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.30 E-value=1.4e-06 Score=86.56 Aligned_cols=65 Identities=22% Similarity=0.094 Sum_probs=59.1
Q ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 99 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 99 a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
..++..|..|.||||+|+..|+.+.++.|+..|+++. .+|..|++||| -|+..|+.+++..++.+
T Consensus 46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~--~kN~~gWs~L~-EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 46 LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS--IKNNEGWSPLH-EAVSTGNEQIITEVLRH 110 (560)
T ss_pred ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc--ccccccccHHH-HHHHcCCHHHHHHHHHH
Confidence 4577889999999999999999999999999999998 89999999999 89999998887776654
No 122
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.30 E-value=1.3e-06 Score=86.83 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=78.5
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP 89 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~--~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~ 89 (497)
+|+.+-.|.||+|++.|+-++|+|||.+|.. ++..|..|.|+||-|+..++ -.+.++|++.|
T Consensus 894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~-r~vc~~lvdag--------------- 957 (1004)
T KOG0782|consen 894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN-RAVCQLLVDAG--------------- 957 (1004)
T ss_pred eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc-hHHHHHHHhcc---------------
Confidence 3566888999999999999999999999963 57788999999999999866 55666665555
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 010920 90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 130 (497)
Q Consensus 90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~ 130 (497)
+.+-..|..|.||-.-|-+.|..+++.+|-++
T Consensus 958 ---------asl~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 958 ---------ASLRKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred ---------hhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 44445789999999999999999999999765
No 123
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=4.9e-07 Score=89.36 Aligned_cols=51 Identities=24% Similarity=0.534 Sum_probs=45.2
Q ss_pred CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
.......|+||++.+.+++.+||+|.| |..|+..+......||+||..+..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence 355677999999999999999999999 999999998877789999998743
No 124
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.5e-07 Score=82.41 Aligned_cols=46 Identities=43% Similarity=1.055 Sum_probs=39.9
Q ss_pred CCcccccccccCCceEEeCCCCccchHHHHHH-HhccC-cccccccccc
Q 010920 442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IKAKK-GDCPVCRTKI 488 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~-~~~~~-~~Cp~Cr~~i 488 (497)
.+..|.||++....+..+||||.| |..|+.. |..++ ..||+||+.+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhc
Confidence 356999999999999999999999 9999999 55443 5599999876
No 125
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.24 E-value=9.2e-07 Score=57.39 Aligned_cols=38 Identities=37% Similarity=0.988 Sum_probs=34.2
Q ss_pred cccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccc
Q 010920 446 CVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVC 484 (497)
Q Consensus 446 C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~C 484 (497)
|+||++....++.+||+|.| |..|...|.. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence 78999999999999999999 9999999986 55679987
No 126
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.24 E-value=6.8e-07 Score=58.92 Aligned_cols=35 Identities=40% Similarity=0.963 Sum_probs=22.1
Q ss_pred cccccccCCc----eEEeCCCCccchHHHHHHHhcc----Ccccc
Q 010920 446 CVICWEAPVE----GACVPCGHMAGCMSCLSEIKAK----KGDCP 482 (497)
Q Consensus 446 C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~----~~~Cp 482 (497)
|+||.+ +.+ ++.+||||.| |..|+.+|... ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE-EHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 8889999999 99999999973 24565
No 127
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1e-06 Score=87.44 Aligned_cols=52 Identities=29% Similarity=0.764 Sum_probs=44.5
Q ss_pred CcccccccccCCceEEeCCCCccchHHHHHHHhcc-----Ccccccccccccc--eeEee
Q 010920 443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-----KGDCPVCRTKINQ--VIRLY 495 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-----~~~Cp~Cr~~i~~--~~~~~ 495 (497)
...|+||++.+.-++.+.|||.| |..|+.+++.. .+.||+||..|.- ..++|
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 66999999999999999999999 99999999874 3789999998854 44443
No 128
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.07 E-value=1.3e-05 Score=84.33 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=91.8
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcC----CCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQG----ASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP 89 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~g----a~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~ 89 (497)
...+.--...|+..|+...|+..++.- .++|..|.-|+++|+.|..+ .+.+++++|++++..+
T Consensus 22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~n-enle~~eLLl~~~~~~------------ 88 (822)
T KOG3609|consen 22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDN-ENLELQELLLDTSSEE------------ 88 (822)
T ss_pred cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccc-ccHHHHHHHhcCcccc------------
Confidence 345666788999999999999988753 46788999999999999997 4466666666553221
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccc--------cccccCCCCHHHHHhhhcCCHHHHH
Q 010920 90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG--------WLREFYGPSFLEALAPQLMSRKIWV 161 (497)
Q Consensus 90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~--------~~~~~~G~T~Lh~~A~~~~~~~iv~ 161 (497)
..+|.+|++.|..++|++|+.+.....+ ...-..+.|||. +||..++.||++
T Consensus 89 -------------------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli-LAAh~NnyEil~ 148 (822)
T KOG3609|consen 89 -------------------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM-LAAHLNNFEILQ 148 (822)
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH-HHHHhcchHHHH
Confidence 2378888888888888888876432210 012234678888 888888888888
Q ss_pred HhhhCCCCCC
Q 010920 162 VVIPCGTANP 171 (497)
Q Consensus 162 ~Ll~~ga~~~ 171 (497)
+|+.+|+.+.
T Consensus 149 ~Ll~kg~~i~ 158 (822)
T KOG3609|consen 149 CLLTRGHCIP 158 (822)
T ss_pred HHHHcCCCCC
Confidence 8888888754
No 129
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.05 E-value=1.5e-06 Score=81.29 Aligned_cols=49 Identities=27% Similarity=0.632 Sum_probs=44.2
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
+.-..|-||+|-+..++++||+|.| |..|+....+....||.|+.++.+
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence 3445999999999999999999999 999999999988899999988744
No 130
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=9e-07 Score=92.31 Aligned_cols=53 Identities=25% Similarity=0.624 Sum_probs=46.6
Q ss_pred CCcccccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccccccc--cceeEee
Q 010920 442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKI--NQVIRLY 495 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i--~~~~~~~ 495 (497)
.-..|++|.+++++++...|+|.| |..|+..... +..+||.|..++ ..+.+||
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 345899999999999999999999 9999999887 448999999998 5577776
No 131
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.04 E-value=4.6e-06 Score=62.54 Aligned_cols=40 Identities=35% Similarity=0.870 Sum_probs=33.4
Q ss_pred ccccccccC-------------CceEEeCCCCccchHHHHHHHhccCccccccc
Q 010920 445 SCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCR 485 (497)
Q Consensus 445 ~C~iC~~~~-------------~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr 485 (497)
.|.||++.+ ..++..+|||.| ...|+.+|...+..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence 599999877 234566999999 9999999999888999997
No 132
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.01 E-value=2.8e-06 Score=77.78 Aligned_cols=49 Identities=29% Similarity=0.481 Sum_probs=43.9
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 489 (497)
.+.-..|-||.+.+..++.++|||.| |+.|+.+.......||+||.+..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred chhHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHH
Confidence 34455999999999999999999999 99999999998889999998764
No 133
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.2e-06 Score=77.73 Aligned_cols=48 Identities=27% Similarity=0.645 Sum_probs=43.7
Q ss_pred ccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 445 ~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
.|..|.+....++++||.|.++|..|...+. .||+|+.++...+.+|.
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~----~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLR----ICPICRSPKTSSVEVNF 207 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCc----cCCCCcChhhceeeccC
Confidence 3999999999999999999999999998744 79999999999988874
No 134
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.89 E-value=1.1e-05 Score=87.08 Aligned_cols=105 Identities=21% Similarity=0.168 Sum_probs=79.3
Q ss_pred HHHHHHHcCCCccccC--CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCC
Q 010920 32 AIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCH 109 (497)
Q Consensus 32 ~v~~Ll~~ga~~n~~d--~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~ 109 (497)
.+..=..++.++|+.+ ..|.|+||.|+..|. .-++++|+++|+++|..|..|+
T Consensus 636 ~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~-------------------------~~~~e~ll~~ga~vn~~d~~g~ 690 (785)
T KOG0521|consen 636 RIATALAHGCCENWPVVLCIGCSLLHVAVGTGD-------------------------SGAVELLLQNGADVNALDSKGR 690 (785)
T ss_pred hhhhhhcchhhhccchhhhcccchhhhhhccch-------------------------HHHHHHHHhcCCcchhhhccCC
Confidence 3333344556665532 468899999998743 4455666677777888899999
Q ss_pred CHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920 110 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 164 (497)
Q Consensus 110 T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll 164 (497)
||||.+...|+...+.+|+++|++.+ ..+..|.++|+ +|....+.+++-+|.
T Consensus 691 ~plh~~~~~g~~~~~~~ll~~~a~~~--a~~~~~~~~l~-~a~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 691 TPLHHATASGHTSIACLLLKRGADPN--AFDPDGKLPLD-IAMEAANADIVLLLR 742 (785)
T ss_pred Ccchhhhhhcccchhhhhcccccccc--ccCccCcchhh-HHhhhccccHHHHHh
Confidence 99999999999999999999999998 88999999999 775556666555443
No 135
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.88 E-value=1.3e-05 Score=86.20 Aligned_cols=130 Identities=15% Similarity=-0.007 Sum_probs=99.7
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP 89 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~ 89 (497)
+.....|.|.||+++..++..+++.+++- |......|.+|.--+|+++. ++ .+++-+|+.
T Consensus 568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg-~ewA~ll~~----------------- 628 (975)
T KOG0520|consen 568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LG-YEWAFLPIS----------------- 628 (975)
T ss_pred ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cC-CceeEEEEe-----------------
Confidence 34467788999999999999999988885 66666777788888888554 24 555544442
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccc----cccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920 90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCG----WLREFYGPSFLEALAPQLMSRKIWVVVIP 165 (497)
Q Consensus 90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~----~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~ 165 (497)
-.|..++.+|..|+||||+|+.+|+..++..|.+.|++... ....-.|.|+-. .|..+|+..+.-+|-+
T Consensus 629 ------~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~-la~s~g~~gia~~lse 701 (975)
T KOG0520|consen 629 ------ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAAD-LARANGHKGIAGYLSE 701 (975)
T ss_pred ------ecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhh-hhhcccccchHHHHhh
Confidence 24566788999999999999999999999999987765432 233446899999 8889999998888765
Q ss_pred C
Q 010920 166 C 166 (497)
Q Consensus 166 ~ 166 (497)
.
T Consensus 702 ~ 702 (975)
T KOG0520|consen 702 K 702 (975)
T ss_pred h
Confidence 5
No 136
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=8.9e-06 Score=75.12 Aligned_cols=50 Identities=28% Similarity=0.662 Sum_probs=41.6
Q ss_pred CCCCCcccccccccCC---ceEEeCCCCccchHHHHHHHhc-cCccccccccccc
Q 010920 439 DDGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN 489 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~~---~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 489 (497)
+.+..-+|.|||+.+. ..+.+||.|.| ...|.++|.. .+.+||+||.+|.
T Consensus 319 ea~~GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 319 EADKGVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred hcCCCceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence 3445579999999763 36678999999 9999999998 5679999999874
No 137
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.82 E-value=1.7e-05 Score=59.63 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=39.2
Q ss_pred CCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920 442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 490 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~ 490 (497)
+...|+||.+...+++.+||||.| +..|+++|... ...||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 456999999999999999999999 99999999987 7899999998854
No 138
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.80 E-value=3.6e-05 Score=66.82 Aligned_cols=68 Identities=15% Similarity=0.045 Sum_probs=62.9
Q ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCC
Q 010920 98 GANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT 168 (497)
Q Consensus 98 ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga 168 (497)
+-++|.+|..|+|+||.|+..|..+.+.+|+.+| +.+. +.|..|.+++. +|-+.|..+.+..|.+.-.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg--v~d~ssldaaq-laek~g~~~fvh~lfe~~~ 70 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG--VTDESSLDAAQ-LAEKGGAQAFVHSLFENDR 70 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccc--ccccccchHHH-HHHhcChHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999 7888 89999999999 9999999999999987643
No 139
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.80 E-value=0.00011 Score=63.78 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920 40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 119 (497)
Q Consensus 40 ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g 119 (497)
+.++|.+|..|+||||.|+..|+ .+.+.+|+.+|+ +.+...|..|.+++.+|-..|
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~-~eavsyllgrg~-----------------------a~vgv~d~ssldaaqlaek~g 57 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGS-NEAVSYLLGRGV-----------------------AFVGVTDESSLDAAQLAEKGG 57 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcc-hhHHHHHhccCc-----------------------ccccccccccchHHHHHHhcC
Confidence 46899999999999999999865 555555554442 566778999999999999999
Q ss_pred CHHHHHHHHHCCCccc
Q 010920 120 HINVVRAIESHICYFC 135 (497)
Q Consensus 120 ~~~~v~~Ll~~g~~i~ 135 (497)
+.+++..|.+.-.+-.
T Consensus 58 ~~~fvh~lfe~~~ets 73 (223)
T KOG2384|consen 58 AQAFVHSLFENDRETS 73 (223)
T ss_pred hHHHHHHHHHHhccCC
Confidence 9999999998755544
No 140
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.76 E-value=2.6e-05 Score=84.39 Aligned_cols=88 Identities=14% Similarity=-0.011 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccC
Q 010920 105 NDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPS 184 (497)
Q Consensus 105 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~ 184 (497)
-..|.|+||.|+..+..-.+++|+..|++++ ..|..|+|||| .+...|+...+..|+++|++.+..+..+..++..+
T Consensus 653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn--~~d~~g~~plh-~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVN--ALDSKGRTPLH-HATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA 729 (785)
T ss_pred hhcccchhhhhhccchHHHHHHHHhcCCcch--hhhccCCCcch-hhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence 3568899999999999999999999999998 89999999999 89999999999999999999887777777777777
Q ss_pred CcCcCHHHHHH
Q 010920 185 LQDVQPRAVIA 195 (497)
Q Consensus 185 ~~~~~~~~~~~ 195 (497)
....+...++.
T Consensus 730 ~~~~~~d~~~l 740 (785)
T KOG0521|consen 730 MEAANADIVLL 740 (785)
T ss_pred hhhccccHHHH
Confidence 55444433333
No 141
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.74 E-value=5.3e-05 Score=72.41 Aligned_cols=57 Identities=35% Similarity=0.436 Sum_probs=51.9
Q ss_pred chHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC
Q 010920 18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA 75 (497)
Q Consensus 18 ~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga 75 (497)
.--|.+|++.|+++.|++|++.|.++|..|.-..+||.+|+.- ||.++|++|++.||
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLc-GHe~vvklLLenGA 93 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLC-GHEDVVKLLLENGA 93 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHc-CcHHHHHHHHHcCC
Confidence 4468999999999999999999999999999999999999998 66888888888876
No 142
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.8e-05 Score=76.30 Aligned_cols=46 Identities=28% Similarity=0.721 Sum_probs=38.7
Q ss_pred cccccccccCCc---eEEeCCCCccchHHHHHHHhccCcc-cccccccccc
Q 010920 444 SSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGD-CPVCRTKINQ 490 (497)
Q Consensus 444 ~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~~~~-Cp~Cr~~i~~ 490 (497)
..|+||+|.+.. +..+||.|.| -..|+..|..+.++ ||+|+..|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCC
Confidence 499999998764 5568999999 99999999987644 9999987743
No 143
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=2e-05 Score=74.74 Aligned_cols=47 Identities=30% Similarity=0.855 Sum_probs=39.5
Q ss_pred CCCcccccccccC-------------CceEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 441 GSSSSCVICWEAP-------------VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 441 ~~~~~C~iC~~~~-------------~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
..+..|.||||.. +.+.-+||||.+ -.+|.+.|.++.-.||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence 3556999999972 224668999999 9999999999888999999985
No 144
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.59 E-value=9e-05 Score=78.26 Aligned_cols=104 Identities=10% Similarity=0.000 Sum_probs=80.9
Q ss_pred hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP 89 (497)
Q Consensus 10 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~ 89 (497)
.+.+|.=|+++|+.|+.+-+.+++++|++++... .-+|-+|+.. +.+++|++++.+........
T Consensus 55 inc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~-~~v~~VE~ll~~~~~~~~~~-------- 118 (822)
T KOG3609|consen 55 INCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV-GSVPLVELLLVHFVDAPYLE-------- 118 (822)
T ss_pred hhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH-HHHHHHHHHHhcccccchhc--------
Confidence 3556778999999999999999999999986654 3578888888 45999999998854432211
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920 90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 135 (497)
Q Consensus 90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~ 135 (497)
..+..-...-.-+.|||++||..++.||+++|+.+|+.+.
T Consensus 119 ------~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 119 ------RSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP 158 (822)
T ss_pred ------cccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence 1222222234568999999999999999999999999886
No 145
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.56 E-value=2.8e-05 Score=74.41 Aligned_cols=50 Identities=34% Similarity=0.768 Sum_probs=43.6
Q ss_pred cccccccccCCceEEeCCCCccchHHHHHHHhcc--CcccccccccccceeEe
Q 010920 444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKINQVIRL 494 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~--~~~Cp~Cr~~i~~~~~~ 494 (497)
..|.||-++-+++...||||.. |..|...|... .-.||.||..|.+.-+|
T Consensus 370 eLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 5899999999999999999999 99999999853 35799999999765443
No 146
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=3.5e-05 Score=71.52 Aligned_cols=49 Identities=29% Similarity=0.629 Sum_probs=41.8
Q ss_pred CcccccccccCCceEEeCCCCccchHHHHHHHhc-cCccccccccccccee
Q 010920 443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVI 492 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~ 492 (497)
..+|.||+...--++.++|+|.| |+.|++.... .++.|++||.+|.+.|
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcch
Confidence 34999999988888999999999 9999988765 3456999999997755
No 147
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=7.3e-05 Score=70.54 Aligned_cols=49 Identities=24% Similarity=0.767 Sum_probs=44.4
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
.++..|+||+-.+.+.++.||+|.- |+.|+.+..-..+.|=+|+..|..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee
Confidence 5677999999999999999999999 999999988777889999988754
No 148
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.34 E-value=4.1e-05 Score=54.11 Aligned_cols=44 Identities=32% Similarity=0.766 Sum_probs=24.1
Q ss_pred CCcccccccccCCceE-EeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 442 SSSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
+...|.+|.+....++ +..|.|.| |..|+..-.. ..||+|+.|.
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B--TTTGGGGTT--TB-SSS--B-
T ss_pred HhcCCcHHHHHhcCCceeccCccHH-HHHHhHHhcC--CCCCCcCChH
Confidence 3458999999999987 46999999 9999977543 3799999876
No 149
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=8.8e-05 Score=73.44 Aligned_cols=46 Identities=37% Similarity=0.730 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 486 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~ 486 (497)
..+...|+||++.+..+..+||+|.| |..|+..+......||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 45677999999999999999999999 99999998864458999994
No 150
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.22 E-value=0.0006 Score=65.41 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=57.1
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 155 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~ 155 (497)
++.|..+.|+.|++.|.++|..|.-..+||.+|+..||..+|++|+++|+-.. +|.+..---| +++.+.
T Consensus 44 cR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~---rdtf~G~RC~-YgaLnd 112 (516)
T KOG0511|consen 44 CRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS---RDTFDGDRCH-YGALND 112 (516)
T ss_pred hhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc---ccccCcchhh-hhhhhH
Confidence 88899999999999999999999999999999999999999999999998776 4444444445 455543
No 151
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.18 E-value=0.00033 Score=66.00 Aligned_cols=50 Identities=34% Similarity=0.816 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc--cCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA--KKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~--~~~~Cp~Cr~~i~~ 490 (497)
.+++..|.||-+...-...+||+|.. |..|+.++.- ..+.||+||..-+.
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccce
Confidence 56778999999999999999999999 9999999876 45789999975543
No 152
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00016 Score=76.41 Aligned_cols=48 Identities=35% Similarity=0.728 Sum_probs=42.4
Q ss_pred CCCCcccccccccCCc-----eEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 440 DGSSSSCVICWEAPVE-----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~-----~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
......|.||+|.... +..+||+|.| |..|...|.++.-.||+||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence 3446799999998888 7888999999 9999999999888999999854
No 153
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00024 Score=70.62 Aligned_cols=49 Identities=31% Similarity=0.807 Sum_probs=44.7
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+..|+||++.+..++.+||||.+ |..|+.+...+...||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence 5677999999999999999999999 999999988888899999988765
No 154
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.05 E-value=0.00093 Score=72.35 Aligned_cols=134 Identities=10% Similarity=-0.068 Sum_probs=91.0
Q ss_pred ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhC-CCCCcccCCCCCCHHHHHHHcCCH
Q 010920 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSC-GANALVRNDDCHTALGVARIKGHI 121 (497)
Q Consensus 43 ~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~g~T~Lh~A~~~g~~ 121 (497)
.......|+|-||+++.. .+.- .++.+++. +......|.+|.-.+|+++. ++.
T Consensus 567 ~~~~~~r~~lllhL~a~~-lyaw------------------------Lie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ 620 (975)
T KOG0520|consen 567 SSSVNFRDMLLLHLLAEL-LYAW------------------------LIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGY 620 (975)
T ss_pred cccCCCcchHHHHHHHHH-hHHH------------------------HHHHHhcccccCchhhcccCCChhhHhhh-cCC
Confidence 334456788889998887 4333 33444443 44445567778888898554 455
Q ss_pred HHHHHH-HHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920 122 NVVRAI-ESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK 200 (497)
Q Consensus 122 ~~v~~L-l~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 200 (497)
+++-+| .-.|..++ .+|..|+|||| +|+..|+..++..|+.-|++.+... +
T Consensus 621 ewA~ll~~~~~~ai~--i~D~~G~tpL~-wAa~~G~e~l~a~l~~lga~~~~~t-------------------------d 672 (975)
T KOG0520|consen 621 EWAFLPISADGVAID--IRDRNGWTPLH-WAAFRGREKLVASLIELGADPGAVT-------------------------D 672 (975)
T ss_pred ceeEEEEeecccccc--cccCCCCcccc-hHhhcCHHHHHHHHHHhcccccccc-------------------------C
Confidence 554444 55778888 89999999999 9999999999999999998764111 1
Q ss_pred CCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 201 IDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
..--.-.|.++...+..+++..+.-++++.
T Consensus 673 ps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 673 PSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred CCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 122223466777777777777666666654
No 155
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.03 E-value=0.00019 Score=49.13 Aligned_cols=45 Identities=31% Similarity=0.848 Sum_probs=36.9
Q ss_pred CcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
...|..|.......+++||+|++ |..|..... ...||+|.++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~r--YngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGER--YNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccccccccccee-eccccChhh--ccCCCCCCCcccC
Confidence 45899999998888899999999 999966543 2379999998864
No 156
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0003 Score=68.42 Aligned_cols=51 Identities=31% Similarity=0.691 Sum_probs=41.8
Q ss_pred CCCcccccccccCCceE-----E---eCCCCccchHHHHHHHh--cc-----Cccccccccccccee
Q 010920 441 GSSSSCVICWEAPVEGA-----C---VPCGHMAGCMSCLSEIK--AK-----KGDCPVCRTKINQVI 492 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~-----~---~pC~H~~~C~~C~~~~~--~~-----~~~Cp~Cr~~i~~~~ 492 (497)
.++..|.||++...... + .+|.|.| |..|+..|. ++ .+.||.||.+....+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 45669999999877666 4 6899999 999999999 44 588999998876544
No 157
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.97 E-value=0.00072 Score=51.21 Aligned_cols=33 Identities=30% Similarity=0.644 Sum_probs=27.4
Q ss_pred eEEeCCCCccchHHHHHHHhcc---Cccccccccccc
Q 010920 456 GACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKIN 489 (497)
Q Consensus 456 ~~~~pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i~ 489 (497)
.+.-.|+|.| ...|+.+|..+ +..||+||++..
T Consensus 47 lv~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence 3445899999 99999999984 478999998753
No 158
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.86 E-value=0.0019 Score=37.72 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=16.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCc
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGASL 43 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~ 43 (497)
|.||||+|+..|+.+++++|++.|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 456666666666666666666655543
No 159
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.0027 Score=57.26 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=42.4
Q ss_pred CCCcccccccccCCc----eEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 441 GSSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
....+|+||.|...+ +++-||||+| |.+|.+++.+.-..||+|..+...
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence 367899999998766 5667999999 999999999877899999998854
No 160
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00053 Score=67.77 Aligned_cols=49 Identities=31% Similarity=0.584 Sum_probs=39.2
Q ss_pred CCCCcccccccccC-----------------CceEEeCCCCccchHHHHHHHhcc-Cccccccccccc
Q 010920 440 DGSSSSCVICWEAP-----------------VEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~-----------------~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~ 489 (497)
......|+|||... ++..++||.|.| -..|.++|.++ +..||.||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCC
Confidence 34567899999732 235677999999 99999999994 458999999875
No 161
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0015 Score=60.04 Aligned_cols=50 Identities=26% Similarity=0.745 Sum_probs=40.6
Q ss_pred CCCCcccccccccCCceEEe-CCCCccchHHHHHHHhc--cCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA--KKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~--~~~~Cp~Cr~~i~~ 490 (497)
.....+|++|-+.+..+... +|||.+ |+.|+..-.. .+-.||.|..++..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcc
Confidence 34556999999999987766 699999 9999987665 34689999988763
No 162
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.00018 Score=68.35 Aligned_cols=53 Identities=23% Similarity=0.476 Sum_probs=42.0
Q ss_pred CCCCCcccccccccCCceEEe-CCCCccchHHHHHHHhc-cCccccccccccccee
Q 010920 439 DDGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVI 492 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~ 492 (497)
.......|+||++.......+ -|.|.| |..|+..-.+ ....||.||+......
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhccccc
Confidence 345667999999988765544 799999 9999988766 5678999999875543
No 163
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.32 E-value=0.0069 Score=35.15 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920 107 DCHTALGVARIKGHINVVRAIESHICYFC 135 (497)
Q Consensus 107 ~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~ 135 (497)
.|.||||+|+..++.+++++|+.++.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 36778888888888888888887776553
No 164
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.28 E-value=0.0016 Score=56.64 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=42.5
Q ss_pred CcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccccee
Q 010920 443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 492 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~ 492 (497)
...|.||......+|.+.|||.| |..|+.+-......|-+|.+...+.+
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G~f 244 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYGRF 244 (259)
T ss_pred ceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhccce
Confidence 35999999999999999999999 99999887777778999988765544
No 165
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0018 Score=60.25 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=43.7
Q ss_pred cccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeE
Q 010920 444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 493 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~ 493 (497)
..|-||...+.++|.+.|+|.| |..|+.+-.....+|.+|.+++.+++.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGSFN 290 (313)
T ss_pred ccccccccccccchhhcCCcee-ehhhhccccccCCcceecccccccccc
Confidence 4799999999999999999999 999998877777899999998877653
No 166
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.13 E-value=0.0057 Score=51.79 Aligned_cols=52 Identities=27% Similarity=0.626 Sum_probs=38.8
Q ss_pred CcccccccccCCceEEeCCC-Ccc-----c------hHHHHHHHhcc-------------------------------Cc
Q 010920 443 SSSCVICWEAPVEGACVPCG-HMA-----G------CMSCLSEIKAK-------------------------------KG 479 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~-H~~-----~------C~~C~~~~~~~-------------------------------~~ 479 (497)
+..|+||||.+-+.|++-|. |-- + -..|..+++.. ..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 34899999999999998876 222 1 35677777641 24
Q ss_pred ccccccccccceeEe
Q 010920 480 DCPVCRTKINQVIRL 494 (497)
Q Consensus 480 ~Cp~Cr~~i~~~~~~ 494 (497)
.||+||..|.+.+.+
T Consensus 82 ~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVV 96 (162)
T ss_pred cCccccCceeceEEc
Confidence 699999999887765
No 167
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.97 E-value=0.0039 Score=59.49 Aligned_cols=29 Identities=38% Similarity=0.945 Sum_probs=25.0
Q ss_pred CCCCccchHHHHHHHhc-cCccccccccccc
Q 010920 460 PCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN 489 (497)
Q Consensus 460 pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 489 (497)
+|||.| |..|+..+.. .+..||.|+.++.
T Consensus 25 ~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 25 VCGHTL-CESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCcc-cHHHHHHHhcCCCCCCCCCCCccc
Confidence 899999 9999999764 4578999998874
No 168
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.77 E-value=0.005 Score=59.15 Aligned_cols=46 Identities=30% Similarity=0.818 Sum_probs=38.7
Q ss_pred CCCcccccccccCCceEEeCC--CCccchHHHHHHHhccCcccccccccccce
Q 010920 441 GSSSSCVICWEAPVEGACVPC--GHMAGCMSCLSEIKAKKGDCPVCRTKINQV 491 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC--~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~ 491 (497)
.+-..|+||.+....+++ .| ||.. |..|..++.. +||.||.+|..+
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~---~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSN---KCPTCRLPIGNI 93 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCcEe-hhhhhhhhcc---cCCccccccccH
Confidence 345699999999999888 67 6999 9999987775 899999998743
No 169
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.75 E-value=0.0063 Score=60.70 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=28.2
Q ss_pred chHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHH
Q 010920 18 DELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVAC 58 (497)
Q Consensus 18 ~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa 58 (497)
-|+||||+..|.-++|.+||+.|+|+..+|..|.||.+++.
T Consensus 431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 56677777777777777777777776667777777766655
No 170
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.71 E-value=0.006 Score=40.90 Aligned_cols=42 Identities=31% Similarity=0.755 Sum_probs=20.7
Q ss_pred cccccccC--CceEEe--CCCCccchHHHHHHHhc-cCcccccccccc
Q 010920 446 CVICWEAP--VEGACV--PCGHMAGCMSCLSEIKA-KKGDCPVCRTKI 488 (497)
Q Consensus 446 C~iC~~~~--~~~~~~--pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i 488 (497)
|++|.+.. .+..+. +|++.+ |..|..++.. ..+.||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence 56666544 333455 456777 9999999996 578999999864
No 171
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0049 Score=56.49 Aligned_cols=48 Identities=27% Similarity=0.554 Sum_probs=37.8
Q ss_pred CCcccccccccCCc----------eEEeCCCCccchHHHHHHHhc--cCcccccccccccc
Q 010920 442 SSSSCVICWEAPVE----------GACVPCGHMAGCMSCLSEIKA--KKGDCPVCRTKINQ 490 (497)
Q Consensus 442 ~~~~C~iC~~~~~~----------~~~~pC~H~~~C~~C~~~~~~--~~~~Cp~Cr~~i~~ 490 (497)
++..|.||-...-. ..-+.|+|.| -..|+..|.. ++-.||+|++.|+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhhH
Confidence 45699999865433 3357999999 9999999997 44679999998854
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.60 E-value=0.0094 Score=58.75 Aligned_cols=41 Identities=32% Similarity=0.628 Sum_probs=33.3
Q ss_pred CcccccccccCCc----eEEeCCCCccchHHHHHHHhccCcccccccc
Q 010920 443 SSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRT 486 (497)
Q Consensus 443 ~~~C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~ 486 (497)
-..|+||+++.-. ++-++|.|.| -..|..+|... .||+||=
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsf-h~~cl~~w~~~--scpvcR~ 219 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSF-HCSCLMKWWDS--SCPVCRY 219 (493)
T ss_pred CCCcchhHhhcCccccceeeeeccccc-chHHHhhcccC--cChhhhh
Confidence 3499999987643 3556999999 88899999975 8999984
No 173
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.45 E-value=0.015 Score=55.33 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=39.5
Q ss_pred CCCCcccccccccC----CceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAP----VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~----~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
......|+|....+ .-+.+.||||+| +..++..+. ....||+|..++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELK-KSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhc-ccccccccCCcccc
Confidence 45667999998766 346677999999 999999996 34679999999843
No 174
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.41 E-value=0.03 Score=56.07 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCCCcc------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920 88 EPTVRLLLSCGANALV------RNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 161 (497)
Q Consensus 88 ~~~v~~Ll~~ga~~~~------~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~ 161 (497)
...|++|.++++..|. .+..--|+||+|+..|..++|.+||+.|+|.. .+|..|.||.. ++. +.++=.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~--~kd~~Grtpy~-ls~---nkdVk~ 477 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS--TKDGAGRTPYS-LSA---NKDVKS 477 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch--hcccCCCCccc-ccc---cHHHHH
Confidence 5667778877776543 23446789999999999999999999999998 89999999999 554 444444
Q ss_pred Hhh
Q 010920 162 VVI 164 (497)
Q Consensus 162 ~Ll 164 (497)
.++
T Consensus 478 ~F~ 480 (591)
T KOG2505|consen 478 IFI 480 (591)
T ss_pred HHH
Confidence 333
No 175
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.27 E-value=0.018 Score=39.32 Aligned_cols=40 Identities=23% Similarity=0.646 Sum_probs=31.7
Q ss_pred ccccccc--cCCceEEeCCC-----CccchHHHHHHHhcc--Cccccccc
Q 010920 445 SCVICWE--APVEGACVPCG-----HMAGCMSCLSEIKAK--KGDCPVCR 485 (497)
Q Consensus 445 ~C~iC~~--~~~~~~~~pC~-----H~~~C~~C~~~~~~~--~~~Cp~Cr 485 (497)
.|-||++ ...+....||. |.+ -..|..+|... +..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 55667788996 666 99999999974 35899995
No 176
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.20 E-value=0.12 Score=46.74 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=24.9
Q ss_pred HHHHHHHHCC-Ccccc-cccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920 122 NVVRAIESHI-CYFCG-WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 122 ~~v~~Ll~~g-~~i~~-~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~ 169 (497)
.++++.+.+| +++|. ..+-..|.|-|. -|...++.+++.+|+++||-
T Consensus 231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD-NA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 231 KVLEYFINRGLVDVNKKFQKVNSGDTMLD-NAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HHHHHHHhccccccchhhhccCCcchHHH-hHHhcCcHHHHHHHHHcCcc
Confidence 4455555555 23331 123345666666 66666666666666666653
No 177
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.13 E-value=0.008 Score=60.67 Aligned_cols=51 Identities=31% Similarity=0.683 Sum_probs=44.3
Q ss_pred CCCCcccccccccCCceEE-eCCCCccchHHHHHHHhccCcccccccccccce
Q 010920 440 DGSSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 491 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~-~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~ 491 (497)
..++..|++|+....+++. +.|||.| |..|...+......||.|+..+...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchh
Confidence 4566799999999999998 4999999 9999999998888999998876443
No 178
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.57 E-value=0.023 Score=53.80 Aligned_cols=48 Identities=31% Similarity=0.816 Sum_probs=35.7
Q ss_pred CCCcccccccccC--CceEEe--CCCCccchHHHHHHHhc-cCccccccccccc
Q 010920 441 GSSSSCVICWEAP--VEGACV--PCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN 489 (497)
Q Consensus 441 ~~~~~C~iC~~~~--~~~~~~--pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 489 (497)
+++..|+.|++.. .+--|. |||-.+ |..|...+.. ..+.||-||+...
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhcc
Confidence 3444699999864 334444 667777 9999998886 5689999998763
No 179
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.023 Score=53.88 Aligned_cols=53 Identities=23% Similarity=0.551 Sum_probs=40.8
Q ss_pred CCcccccccccCCceE-EeCCCCccchHHHHHHHhccCcccccccccc--cceeEee
Q 010920 442 SSSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLY 495 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i--~~~~~~~ 495 (497)
....|+||+....+.. +.--|-+| |+.|+-......+.||+-..++ .+.+++|
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 4459999999887644 44568888 9999999998888999876554 5566655
No 180
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.02 Score=55.96 Aligned_cols=43 Identities=33% Similarity=0.692 Sum_probs=32.9
Q ss_pred CCcccccccccCCc---eEEeCCCCccchHHHHHHHhc--------cCccccccc
Q 010920 442 SSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKA--------KKGDCPVCR 485 (497)
Q Consensus 442 ~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~--------~~~~Cp~Cr 485 (497)
....|+||++...- .+++||+|+| |..|....-+ +..+||-|.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHH-HHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 44799999998754 7788999999 9999877654 235677553
No 181
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.31 E-value=0.011 Score=61.82 Aligned_cols=52 Identities=21% Similarity=0.391 Sum_probs=41.0
Q ss_pred CCcccccccccCCceE---EeCCCCccchHHHHHHHhccCcccccccccccceeEe
Q 010920 442 SSSSCVICWEAPVEGA---CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL 494 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~---~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~ 494 (497)
....|++|+....+.. -.+|+|.| |..|+..|.+---.||+||..+..++.+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeeee
Confidence 4458999997665532 34999999 9999999998666899999887666543
No 182
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.05 E-value=0.047 Score=36.03 Aligned_cols=46 Identities=26% Similarity=0.740 Sum_probs=26.6
Q ss_pred ccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccccee
Q 010920 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 492 (497)
Q Consensus 445 ~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~ 492 (497)
-|.-|+-..... +.|..-++|..|...|...+..||+|..++...+
T Consensus 4 nCKsCWf~~k~L--i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGL--IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSE--EE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCe--eeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 466666555554 4588555599999999999999999999886654
No 183
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.01 E-value=0.052 Score=38.30 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=28.9
Q ss_pred CCcccccccccCCceEEe-CCCCccchHHHHHHHhc--cCccccc
Q 010920 442 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA--KKGDCPV 483 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~--~~~~Cp~ 483 (497)
....|+|.+..+.+++.- .|+|.| ....+..+.. ...+||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence 446999999999998764 999999 9999999993 4578998
No 184
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.98 E-value=0.026 Score=60.68 Aligned_cols=44 Identities=30% Similarity=0.720 Sum_probs=38.4
Q ss_pred cccccccccCCceEEeCCCCccchHHHHHHHhcc--Cccccccccccc
Q 010920 444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN 489 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~--~~~Cp~Cr~~i~ 489 (497)
..|.+|++ ...++.++|+|.+ |.+|....... ...||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHH
Confidence 69999999 8888899999999 99999998873 357999998774
No 185
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.82 E-value=0.015 Score=55.23 Aligned_cols=55 Identities=22% Similarity=0.528 Sum_probs=45.2
Q ss_pred CCCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCcccccccccccceeEee
Q 010920 440 DGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~ 495 (497)
....-.|.+|-.-+.|+..+ -|-|.| |..|+.+.......||.|...|-++.++.
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~pl~ 67 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHPLL 67 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCccccc
Confidence 34456999999988876543 799999 99999999888889999999988776543
No 186
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.77 E-value=0.024 Score=56.90 Aligned_cols=48 Identities=23% Similarity=0.612 Sum_probs=40.0
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc-----cCcccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-----KKGDCPVCRTKI 488 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-----~~~~Cp~Cr~~i 488 (497)
..+..+|.+|.|...+.+...|.|.| |..|+..... ....||.|-...
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence 34556999999999999999999999 9999977664 347899997543
No 187
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.25 E-value=0.033 Score=50.21 Aligned_cols=45 Identities=27% Similarity=0.636 Sum_probs=34.6
Q ss_pred CCCccccccccc---CCceEEe--C-CCCccchHHHHHHHhc-cCcccc--cccc
Q 010920 441 GSSSSCVICWEA---PVEGACV--P-CGHMAGCMSCLSEIKA-KKGDCP--VCRT 486 (497)
Q Consensus 441 ~~~~~C~iC~~~---~~~~~~~--p-C~H~~~C~~C~~~~~~-~~~~Cp--~Cr~ 486 (497)
.++..|+||... -.++.++ | |-|.. |.+|..++-. .+..|| -|.+
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence 345699999863 3455555 7 99999 9999999886 568899 7754
No 188
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.18 E-value=0.025 Score=41.87 Aligned_cols=45 Identities=33% Similarity=0.778 Sum_probs=22.5
Q ss_pred cccccccccCC------ceEEe--CCCCccchHHHHHHHhcc-----------Cccccccccccc
Q 010920 444 SSCVICWEAPV------EGACV--PCGHMAGCMSCLSEIKAK-----------KGDCPVCRTKIN 489 (497)
Q Consensus 444 ~~C~iC~~~~~------~~~~~--pC~H~~~C~~C~~~~~~~-----------~~~Cp~Cr~~i~ 489 (497)
..|.||+...- +.+.- .|++.| -..|..+|... .++||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 48999997643 23332 688777 88899998752 267999999885
No 189
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=92.69 E-value=0.94 Score=41.14 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=39.7
Q ss_pred CHHHHHHHHhCC-CCCcc---cCCCCCCHHHHHHHcCCHHHHHHHHHCCCcc
Q 010920 87 LEPTVRLLLSCG-ANALV---RNDDCHTALGVARIKGHINVVRAIESHICYF 134 (497)
Q Consensus 87 ~~~~v~~Ll~~g-a~~~~---~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i 134 (497)
...+++.+|..| +++|. +-+.|.|-|.-|..+++.+++.+|+++|+-.
T Consensus 229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 356788888888 45654 3468999999999999999999999999843
No 190
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.031 Score=52.34 Aligned_cols=32 Identities=25% Similarity=0.853 Sum_probs=25.5
Q ss_pred EeCCCCccchHHHHHHHhccCccccccccccccee
Q 010920 458 CVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 492 (497)
Q Consensus 458 ~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~ 492 (497)
++||.|+| |.+|+..-.. +.||.|-.+|..+.
T Consensus 106 mIPCkHvF-Cl~CAr~~~d--K~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 106 MIPCKHVF-CLECARSDSD--KICPLCDDRVQRIE 137 (389)
T ss_pred ccccchhh-hhhhhhcCcc--ccCcCcccHHHHHH
Confidence 56999999 9999877654 48999988775543
No 191
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=91.81 E-value=0.18 Score=37.34 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=27.4
Q ss_pred EEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 457 ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 457 ~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
+-=-|.|.| -..|+.+|..++..||++|++.
T Consensus 50 ~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 50 VWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred EEEecchHH-HHHHHHHHHhhCCCCCCCCcee
Confidence 334799999 9999999999999999999865
No 192
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.30 E-value=0.099 Score=56.31 Aligned_cols=48 Identities=27% Similarity=0.737 Sum_probs=36.3
Q ss_pred CCCccccccccc-------CCceEEeCCCCccchHHHHHHHhcc--Cccccccccccc
Q 010920 441 GSSSSCVICWEA-------PVEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN 489 (497)
Q Consensus 441 ~~~~~C~iC~~~-------~~~~~~~pC~H~~~C~~C~~~~~~~--~~~Cp~Cr~~i~ 489 (497)
....+|.||+.. .+.-.+-.|+|-| ...|..+|-.. +..||+||..|.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCccccccc
Confidence 445699999863 2233344699999 99999999974 478999998764
No 193
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=91.24 E-value=0.06 Score=52.61 Aligned_cols=54 Identities=28% Similarity=0.615 Sum_probs=0.0
Q ss_pred CCccccccccc-------------------CCceEEeCCCCccchHHHHHHHhcc---------Ccccccccccccc---
Q 010920 442 SSSSCVICWEA-------------------PVEGACVPCGHMAGCMSCLSEIKAK---------KGDCPVCRTKINQ--- 490 (497)
Q Consensus 442 ~~~~C~iC~~~-------------------~~~~~~~pC~H~~~C~~C~~~~~~~---------~~~Cp~Cr~~i~~--- 490 (497)
....|++|+.. +.+.+|.||||++ -...+.-|... ...||.|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g 405 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG 405 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence 47799999862 3457788999998 66677777652 2679999999964
Q ss_pred eeEeee
Q 010920 491 VIRLYT 496 (497)
Q Consensus 491 ~~~~~~ 496 (497)
++++++
T Consensus 406 ~vrLiF 411 (416)
T PF04710_consen 406 YVRLIF 411 (416)
T ss_dssp ------
T ss_pred ceEEEE
Confidence 566654
No 194
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=0.13 Score=50.49 Aligned_cols=54 Identities=22% Similarity=0.451 Sum_probs=38.4
Q ss_pred CCcccccccccCCc---eEEeCCCCccchHHHHHHHhcc---Ccccccccccc--cceeEeee
Q 010920 442 SSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKI--NQVIRLYT 496 (497)
Q Consensus 442 ~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i--~~~~~~~~ 496 (497)
....|||=.+.-.+ ++.+.|||+. |..-+.++.+. +-+||+|-... .+..+||+
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred ceeecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 34588885443222 5567899999 99999999973 36899996544 55666664
No 195
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=90.87 E-value=0.13 Score=57.62 Aligned_cols=52 Identities=23% Similarity=0.739 Sum_probs=40.9
Q ss_pred CCCCCcccccccccC---CceEEeCCCCccchHHHHHHHhccC----------cccccccccccce
Q 010920 439 DDGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKK----------GDCPVCRTKINQV 491 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~---~~~~~~pC~H~~~C~~C~~~~~~~~----------~~Cp~Cr~~i~~~ 491 (497)
..+.+.+|.||+... +-++.+-|+|+| -..|..++...+ ..||+|..+|+++
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 344566999999754 346778999999 899998887642 5699999999765
No 196
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.66 E-value=0.15 Score=41.86 Aligned_cols=48 Identities=29% Similarity=0.628 Sum_probs=39.1
Q ss_pred CcccccccccCCceEEe----CCCCccchHHHHHHHhc---cCcccccccccccce
Q 010920 443 SSSCVICWEAPVEGACV----PCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQV 491 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~----pC~H~~~C~~C~~~~~~---~~~~Cp~Cr~~i~~~ 491 (497)
..+|.||.|...+.-|+ =||-.. |..|...++. ....||+|+..+.+.
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCccccccccc
Confidence 45999999998887776 388887 9999888886 458899999988653
No 197
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.41 E-value=0.13 Score=42.74 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=27.7
Q ss_pred CcccccccccCCc---eEEeCCC------CccchHHHHHHHhc
Q 010920 443 SSSCVICWEAPVE---GACVPCG------HMAGCMSCLSEIKA 476 (497)
Q Consensus 443 ~~~C~iC~~~~~~---~~~~pC~------H~~~C~~C~~~~~~ 476 (497)
..+|.||++..-+ +|.++|+ |+| |..|..+|.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHHHh
Confidence 4599999998765 7778998 777 9999999954
No 198
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=88.76 E-value=3.2 Score=36.67 Aligned_cols=130 Identities=17% Similarity=0.094 Sum_probs=83.6
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------ccCCCHHH--
Q 010920 20 LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------AKRGLEPT-- 90 (497)
Q Consensus 20 ~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------~~~g~~~~-- 90 (497)
.|..|++.+...+++.+-+...+- -...++.+-.||...+ .|+|++.-+. +...+. ...+..++
T Consensus 49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qk-ydiV~WI~qn---L~i~~~~~iFdIA~~~kDlsLys 121 (192)
T PF03158_consen 49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQK-YDIVKWIGQN---LHIYNPEDIFDIAFAKKDLSLYS 121 (192)
T ss_pred HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHcc-ccHHHHHhhc---cCCCCchhhhhhhhhccchhHHH
Confidence 677899999999998876653221 2346788899999844 9999998432 222222 22222222
Q ss_pred -HH-HHHhCCCCCcccCC--CCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920 91 -VR-LLLSCGANALVRND--DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIP 165 (497)
Q Consensus 91 -v~-~Ll~~ga~~~~~~~--~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~ 165 (497)
.. ++..+...-...|. --.--|..|+..|-...+-..+++|.+++ . ++|- .|+..++.+|+.+++.
T Consensus 122 lGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~--~------~vls-~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 122 LGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--I------IVLS-QAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--H------HHHH-HHHHhhHHHHHHHhhc
Confidence 11 12222111000000 00124678999999999999999999887 1 7999 9999999999998875
No 199
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=88.75 E-value=0.35 Score=45.62 Aligned_cols=50 Identities=22% Similarity=0.514 Sum_probs=34.2
Q ss_pred CCCCcccccccccC-------------------CceEEeCCCCccchHHHHHHHhcc---------Ccccccccccccc
Q 010920 440 DGSSSSCVICWEAP-------------------VEGACVPCGHMAGCMSCLSEIKAK---------KGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~-------------------~~~~~~pC~H~~~C~~C~~~~~~~---------~~~Cp~Cr~~i~~ 490 (497)
...+.+|++|+..- .+-.|.||||++ -..=..-|... ...||.|...+..
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~-sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC-SEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc-chhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 34567999998742 345678999996 45555555542 2669999988754
No 200
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=0.15 Score=37.34 Aligned_cols=28 Identities=29% Similarity=0.694 Sum_probs=24.1
Q ss_pred CCCCccchHHHHHHHhcc---Ccccccccccc
Q 010920 460 PCGHMAGCMSCLSEIKAK---KGDCPVCRTKI 488 (497)
Q Consensus 460 pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i 488 (497)
-|.|.| -..|+.+|... ...||.||+..
T Consensus 50 ~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 50 YCLHAF-HAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHH-HHHHHHHHhcCccccccCCcchhee
Confidence 799999 99999999973 37899999854
No 201
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=1.5 Score=41.05 Aligned_cols=32 Identities=28% Similarity=0.617 Sum_probs=28.5
Q ss_pred cccccccccCCceEEeCCC----CccchHHHHHHHhc
Q 010920 444 SSCVICWEAPVEGACVPCG----HMAGCMSCLSEIKA 476 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~----H~~~C~~C~~~~~~ 476 (497)
..|.+|.++..|..|+.|- |-| |+.|......
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSResIK 304 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRESIK 304 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccce-ecccCHHHHH
Confidence 5899999999999999995 999 9999887665
No 202
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.13 E-value=0.7 Score=45.63 Aligned_cols=48 Identities=31% Similarity=0.695 Sum_probs=32.2
Q ss_pred CCcccccccccCCceEEe-----------------CCCCccc----hHHHHHHHhc-------------cCccccccccc
Q 010920 442 SSSSCVICWEAPVEGACV-----------------PCGHMAG----CMSCLSEIKA-------------KKGDCPVCRTK 487 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~-----------------pC~H~~~----C~~C~~~~~~-------------~~~~Cp~Cr~~ 487 (497)
+...|.-|+....++.+. +|+.-++ |.+|..+|-- .+..||.||++
T Consensus 270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 334666688877776665 2332222 9999988863 25789999998
Q ss_pred cc
Q 010920 488 IN 489 (497)
Q Consensus 488 i~ 489 (497)
+.
T Consensus 350 FC 351 (358)
T PF10272_consen 350 FC 351 (358)
T ss_pred ce
Confidence 64
No 203
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=84.53 E-value=0.47 Score=44.58 Aligned_cols=47 Identities=30% Similarity=0.714 Sum_probs=33.9
Q ss_pred CCcccccccccCCc---eEEeCCCCccchHHHHHHHhcc-----------------------Cccccccccccc
Q 010920 442 SSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAK-----------------------KGDCPVCRTKIN 489 (497)
Q Consensus 442 ~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~-----------------------~~~Cp~Cr~~i~ 489 (497)
-..-|+||+--+++ ...++|-|.+ -..|..+..+. ...||+||..|.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~-H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYM-HFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 34578888876654 4567999999 88887665431 245999998883
No 204
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=83.15 E-value=0.51 Score=38.12 Aligned_cols=32 Identities=28% Similarity=0.631 Sum_probs=24.6
Q ss_pred CCCCcccccccccCCc--eEEeCCCCccchHHHHH
Q 010920 440 DGSSSSCVICWEAPVE--GACVPCGHMAGCMSCLS 472 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~--~~~~pC~H~~~C~~C~~ 472 (497)
.++...|.||.....+ .+..||||.+ ...|..
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence 3456689999998765 3445999999 888864
No 205
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=0.68 Score=36.19 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=25.6
Q ss_pred EeCCCCccchHHHHHHHhccCccccccccc
Q 010920 458 CVPCGHMAGCMSCLSEIKAKKGDCPVCRTK 487 (497)
Q Consensus 458 ~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~ 487 (497)
-=-|.|.| -..|+.+|..++..||+|.+.
T Consensus 78 WG~CNHaF-H~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 78 WGVCNHAF-HFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence 34799999 999999999998999999764
No 206
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=83.07 E-value=4.7 Score=38.35 Aligned_cols=54 Identities=9% Similarity=-0.100 Sum_probs=42.5
Q ss_pred CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEe
Q 010920 439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL 494 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~ 494 (497)
..-...+|.+|-......+..||+|...|.+|+.. .....||.|..-+-..++|
T Consensus 339 ~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred cchhhcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence 34556799999999999999999999999999883 3346899997655555544
No 207
>PHA02862 5L protein; Provisional
Probab=82.84 E-value=1.3 Score=37.11 Aligned_cols=44 Identities=30% Similarity=0.544 Sum_probs=33.8
Q ss_pred cccccccccCCceEEeCCCC----ccchHHHHHHHhc--cCcccccccccc
Q 010920 444 SSCVICWEAPVEGACVPCGH----MAGCMSCLSEIKA--KKGDCPVCRTKI 488 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~H----~~~C~~C~~~~~~--~~~~Cp~Cr~~i 488 (497)
..|=||++.-.+. ..||.. .++-.+|..+|.+ ++..|++|+.+.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 4899999886544 469884 2347899999997 457899999765
No 208
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=82.82 E-value=2.7 Score=31.52 Aligned_cols=47 Identities=21% Similarity=0.142 Sum_probs=36.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHc
Q 010920 19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL 73 (497)
Q Consensus 19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ 73 (497)
.-|.+|+..|+.++++.+++.+ .++ ...|..|+.. .+-+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~-H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKS-HNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHH-hhHHHHHHHHHh
Confidence 4679999999999999999765 221 4669999987 667888888765
No 209
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.03 E-value=0.69 Score=43.34 Aligned_cols=42 Identities=24% Similarity=0.554 Sum_probs=34.2
Q ss_pred cccccccccCCceEEe-CCCCccchHHHHHHHhc-cCcccccccc
Q 010920 444 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKA-KKGDCPVCRT 486 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~ 486 (497)
..|+.|.-...+++-+ -|+|.| |.+|+..-.. .-.+||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence 5899999988888877 467999 9999986554 4468999975
No 210
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=81.48 E-value=0.98 Score=43.28 Aligned_cols=43 Identities=26% Similarity=0.585 Sum_probs=27.9
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc---------------------cCcccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---------------------KKGDCPVCRT 486 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~---------------------~~~~Cp~Cr~ 486 (497)
.+...+|+||-|.+.-..+ |-. +|.+|---+++ +++.||.||=
T Consensus 12 edl~ElCPVCGDkVSGYHY---GLL-TCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVSGYHY---GLL-TCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccccccCcccccee---eee-ehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 4455699999999886443 222 26666544443 1478999984
No 211
>PHA03096 p28-like protein; Provisional
Probab=80.67 E-value=0.99 Score=43.27 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=31.7
Q ss_pred cccccccccCC--------ceEEeCCCCccchHHHHHHHhcc---C---cccccccccc
Q 010920 444 SSCVICWEAPV--------EGACVPCGHMAGCMSCLSEIKAK---K---GDCPVCRTKI 488 (497)
Q Consensus 444 ~~C~iC~~~~~--------~~~~~pC~H~~~C~~C~~~~~~~---~---~~Cp~Cr~~i 488 (497)
..|.||++... ..++-.|.|.| |..|+..|... + ..||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHHhhhhcccCccccchhhHH
Confidence 48999998643 35566899999 99999999863 2 3455555433
No 212
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.70 E-value=0.62 Score=48.37 Aligned_cols=37 Identities=30% Similarity=0.715 Sum_probs=30.0
Q ss_pred CcccccccccC----CceEEeCCCCccchHHHHHHHhccCcccc
Q 010920 443 SSSCVICWEAP----VEGACVPCGHMAGCMSCLSEIKAKKGDCP 482 (497)
Q Consensus 443 ~~~C~iC~~~~----~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp 482 (497)
-..|.||+..+ ..++++-|||.. |..|...+.++ .||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYNA--SCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhhc--cCC
Confidence 34899997654 347788999999 99999999987 666
No 213
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=74.93 E-value=3 Score=35.78 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=34.5
Q ss_pred CCcccccccccCCceEEeCCCCc----cchHHHHHHHhcc--Ccccccccccc
Q 010920 442 SSSSCVICWEAPVEGACVPCGHM----AGCMSCLSEIKAK--KGDCPVCRTKI 488 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~pC~H~----~~C~~C~~~~~~~--~~~Cp~Cr~~i 488 (497)
....|=||++.... ...||... ++-.+|..+|... ...|++|+.+.
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 45699999988654 34588842 2378999999984 47799998865
No 214
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=72.50 E-value=0.98 Score=48.00 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc---Cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i~ 489 (497)
+-...+|+||.......+.+.|.|.| |..|.-..... ...||+|+..++
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhh
Confidence 34556999999999999999999999 99998776652 468999997664
No 215
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=72.01 E-value=2.7 Score=28.74 Aligned_cols=42 Identities=21% Similarity=0.540 Sum_probs=19.7
Q ss_pred ccccccccCCceE-EeCCCCccchHHHHHHHhc----cCccccccccc
Q 010920 445 SCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKA----KKGDCPVCRTK 487 (497)
Q Consensus 445 ~C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~----~~~~Cp~Cr~~ 487 (497)
.|++...+...++ ...|.|.- |.+=..-+.. ...+||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 7889888887766 45899998 7544333222 34789999864
No 216
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=71.18 E-value=0.95 Score=43.95 Aligned_cols=51 Identities=20% Similarity=0.427 Sum_probs=26.5
Q ss_pred CCcccccccccCCceEEeCC-----CCccchHHHHHHHhccCcccccccccccceeE
Q 010920 442 SSSSCVICWEAPVEGACVPC-----GHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 493 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~pC-----~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~ 493 (497)
....|+||-..+.-.++..= +|.+ |..|...|.-.+.+||.|...-...+.
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~-Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~ 226 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLH-CSLCGTEWRFVRIKCPYCGNTDHEKLE 226 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEE-ETTT--EEE--TTS-TTT---SS-EEE
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEE-cCCCCCeeeecCCCCcCCCCCCCccee
Confidence 34699999999877666643 3555 999999998888899999875544443
No 217
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=71.06 E-value=1.6 Score=42.72 Aligned_cols=47 Identities=30% Similarity=0.658 Sum_probs=35.6
Q ss_pred CCcccccccccC----CceEEeCCCCccchHHHHHHHhcc--Cccccccccccc
Q 010920 442 SSSSCVICWEAP----VEGACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTKIN 489 (497)
Q Consensus 442 ~~~~C~iC~~~~----~~~~~~pC~H~~~C~~C~~~~~~~--~~~Cp~Cr~~i~ 489 (497)
...-|..|-+.. .+.--+||.|.| -..|...+..+ ...||-||+-+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence 445899998753 345567999999 99999988764 478999995443
No 218
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=69.05 E-value=6.8 Score=29.34 Aligned_cols=47 Identities=19% Similarity=0.081 Sum_probs=37.3
Q ss_pred CHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 110 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 110 T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
..|..|+..|+.++++.+++.+ .++ ...|. .|+...+-+++++|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~--------~~~l~-~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD--------NDCLE-YAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH--------HHHHH-HHHHHhhHHHHHHHHHh
Confidence 4688999999999999998654 121 34678 89999999999999876
No 219
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=66.62 E-value=1.5 Score=49.49 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=38.4
Q ss_pred CCCCcccccccccCCc-eEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 440 DGSSSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~-~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
......|.||.|...+ ....-|||.+ |..|...|...+..||+|...+
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~-c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEP-CCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhH-hhhHHHHHHHHhccCcchhhhh
Confidence 3445599999997763 3344799999 9999999999999999997543
No 220
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=66.56 E-value=2.6 Score=40.91 Aligned_cols=45 Identities=24% Similarity=0.459 Sum_probs=33.1
Q ss_pred CCcccccccccCCceEEe---CCCCccc-hHHHHHHHhccCcccccccc
Q 010920 442 SSSSCVICWEAPVEGACV---PCGHMAG-CMSCLSEIKAKKGDCPVCRT 486 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~---pC~H~~~-C~~C~~~~~~~~~~Cp~Cr~ 486 (497)
....|+||-..+.-.+.. .=|++++ |.-|...|.-.+.+||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 456999999988544332 2343332 99999999888889999986
No 221
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=3.5 Score=40.08 Aligned_cols=29 Identities=34% Similarity=0.919 Sum_probs=24.6
Q ss_pred eCCCCccchHHHHHHHhcc-Ccccccccccc
Q 010920 459 VPCGHMAGCMSCLSEIKAK-KGDCPVCRTKI 488 (497)
Q Consensus 459 ~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i 488 (497)
+.|||.+ |..|+.++... ...||.||.+.
T Consensus 25 l~c~h~~-c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 25 LKCGHTI-CQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cccCcee-hHhHHHHHhcCceeeccCCCCcc
Confidence 4599999 99999999874 46799999984
No 222
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=64.31 E-value=2 Score=41.68 Aligned_cols=46 Identities=24% Similarity=0.453 Sum_probs=33.6
Q ss_pred CCcccccccccCCceEEe----CCCCccc-hHHHHHHHhccCccccccccc
Q 010920 442 SSSSCVICWEAPVEGACV----PCGHMAG-CMSCLSEIKAKKGDCPVCRTK 487 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~----pC~H~~~-C~~C~~~~~~~~~~Cp~Cr~~ 487 (497)
....|+||-..+.-.++. .=|+++. |..|...|.-.+.+||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 455999999988643332 2343332 999999998888899999864
No 223
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=63.11 E-value=4.7 Score=38.97 Aligned_cols=46 Identities=35% Similarity=0.795 Sum_probs=36.0
Q ss_pred cccccccccC----CceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 444 SSCVICWEAP----VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 444 ~~C~iC~~~~----~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..|++|.+.. ...+-.||++.. |..|...+......||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~-~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRL-CLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccc-hhhhhhcccccCCCCCccCCcccc
Confidence 4899998743 234445788886 999999999888999999987654
No 224
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=61.86 E-value=2.4 Score=40.19 Aligned_cols=46 Identities=26% Similarity=0.652 Sum_probs=36.7
Q ss_pred cccccccc----CCceEEeCCCCccchHHHHHHHhccCccccccccccccee
Q 010920 445 SCVICWEA----PVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 492 (497)
Q Consensus 445 ~C~iC~~~----~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~ 492 (497)
.|+||.+. ...+..++|||.- -..|.+.+....-.||+|.. +....
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~-h~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYM-HSRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred CCchhHHHhccccccCCccCcccch-HHHHHHHHhccCCCCCcccc-hHHHH
Confidence 49999975 4557788999998 68999998876678999988 65443
No 225
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.13 E-value=4.6 Score=38.44 Aligned_cols=53 Identities=21% Similarity=0.377 Sum_probs=34.5
Q ss_pred CcccccccccCC---ceEEeCCCCccchHHHHHHHhc---cCccccccccc--ccceeEeee
Q 010920 443 SSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKA---KKGDCPVCRTK--INQVIRLYT 496 (497)
Q Consensus 443 ~~~C~iC~~~~~---~~~~~pC~H~~~C~~C~~~~~~---~~~~Cp~Cr~~--i~~~~~~~~ 496 (497)
...|+|=.+.-. -++.+.|||+. -.+-..++++ .+-+||+|-.- .++++++|+
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVI-skeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVI-SKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred eeeccccHhhhcccCCCeeeecccee-eHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 347777443222 15667899999 7888888876 35789999532 245666653
No 226
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=60.68 E-value=37 Score=37.19 Aligned_cols=45 Identities=24% Similarity=0.655 Sum_probs=34.7
Q ss_pred CCCcccccccccCCce--E--EeCCCCccchHHHHHHHhcc-------Ccccccccc
Q 010920 441 GSSSSCVICWEAPVEG--A--CVPCGHMAGCMSCLSEIKAK-------KGDCPVCRT 486 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~--~--~~pC~H~~~C~~C~~~~~~~-------~~~Cp~Cr~ 486 (497)
....+|.||.+..... + ...|-|+| -..|+.+|.+. .++||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVF-Hl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVF-HLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhh-hHHHHHHHHHHhhhccCccccCCcccc
Confidence 4567999999976542 2 22577999 99999999873 388999974
No 227
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=60.17 E-value=20 Score=31.80 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=32.5
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHH
Q 010920 20 LLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIE 72 (497)
Q Consensus 20 ~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~ 72 (497)
-|..|+..|....|...|++|.+++. ++|-.|+.. +|..++.+++.
T Consensus 146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~y-nhRkIL~yfi~ 191 (192)
T PF03158_consen 146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKY-NHRKILDYFIR 191 (192)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHh-hHHHHHHHhhc
Confidence 35677777777777777777776632 777777776 66777776653
No 228
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=59.76 E-value=5.7 Score=26.68 Aligned_cols=39 Identities=31% Similarity=0.601 Sum_probs=23.6
Q ss_pred cccccccCCc--eEEeCCCCc----cchHHHHHHHhc--cCcccccc
Q 010920 446 CVICWEAPVE--GACVPCGHM----AGCMSCLSEIKA--KKGDCPVC 484 (497)
Q Consensus 446 C~iC~~~~~~--~~~~pC~H~----~~C~~C~~~~~~--~~~~Cp~C 484 (497)
|-||++.... ....||+-. ++-..|..+|.. .+.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5688875432 566799822 347789999997 34678887
No 229
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=58.77 E-value=1.6 Score=24.46 Aligned_cols=22 Identities=36% Similarity=0.807 Sum_probs=14.4
Q ss_pred hHHHHHHHhccCcccccccccc
Q 010920 467 CMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 467 C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
|..|...+......||.|..+|
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 5566666666566788887654
No 230
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=56.46 E-value=2.8 Score=39.84 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=40.8
Q ss_pred CcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccccceeEe
Q 010920 443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQVIRL 494 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~~~~~ 494 (497)
.-.|.+|+.+-......+|+|.+.|..|..+.+.++ ..|++|...+.....|
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 348999999999999999999999999977775433 4599998766555443
No 231
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.20 E-value=7.1 Score=36.77 Aligned_cols=28 Identities=36% Similarity=0.888 Sum_probs=21.2
Q ss_pred CCCccchHHHHHHHhc-------------cCccccccccccc
Q 010920 461 CGHMAGCMSCLSEIKA-------------KKGDCPVCRTKIN 489 (497)
Q Consensus 461 C~H~~~C~~C~~~~~~-------------~~~~Cp~Cr~~i~ 489 (497)
|+-+- |.+|..+|-. ++.+||.||+.+.
T Consensus 325 crp~w-c~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLW-CRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHH-HHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 44455 9999888763 3689999999774
No 232
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=51.01 E-value=15 Score=39.73 Aligned_cols=53 Identities=23% Similarity=0.451 Sum_probs=39.2
Q ss_pred CCcccccccc--cCCceEEeCCCCc----cchHHHHHHHhc--cCcccccccccccceeEee
Q 010920 442 SSSSCVICWE--APVEGACVPCGHM----AGCMSCLSEIKA--KKGDCPVCRTKINQVIRLY 495 (497)
Q Consensus 442 ~~~~C~iC~~--~~~~~~~~pC~H~----~~C~~C~~~~~~--~~~~Cp~Cr~~i~~~~~~~ 495 (497)
+...|-||.. .+-++.+.||+.. ++..+|...|.. ...+|-+|..++ ++..||
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~-~Fk~IY 71 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY-KFKDIY 71 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee-eeeeec
Confidence 4469999884 5667999999954 347899999987 347899998765 344444
No 233
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.87 E-value=13 Score=34.33 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=33.0
Q ss_pred CCccccccc----ccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 442 SSSSCVICW----EAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 442 ~~~~C~iC~----~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
....|+|-- +..+-+++.+|||+| -..-..++. ...|++|.+++..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~-SerAlKeik--as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVF-SERALKEIK--ASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceec-cHHHHHHhh--hccccccCCcccc
Confidence 345788744 344557788999999 666666665 4589999988754
No 234
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.53 E-value=12 Score=37.21 Aligned_cols=31 Identities=32% Similarity=0.743 Sum_probs=25.4
Q ss_pred eEEeCCCCccchHHHHHHHhcc--Cccccccccc
Q 010920 456 GACVPCGHMAGCMSCLSEIKAK--KGDCPVCRTK 487 (497)
Q Consensus 456 ~~~~pC~H~~~C~~C~~~~~~~--~~~Cp~Cr~~ 487 (497)
.+.+.|||.| =..|+++|..+ ...||.|...
T Consensus 22 ~vsl~cghlF-gs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 22 IVSLQCGHLF-GSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred Eeeecccccc-cHHHHHHHHhhhhhhhCcccCCh
Confidence 4567899999 99999999863 3779999754
No 235
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=48.31 E-value=14 Score=27.56 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=19.0
Q ss_pred CCcccccccccCCc----eEEe---CCCCccchHHHHHHHhc-cCccccccccccc
Q 010920 442 SSSSCVICWEAPVE----GACV---PCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN 489 (497)
Q Consensus 442 ~~~~C~iC~~~~~~----~~~~---pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 489 (497)
....|.||-|..-. -+|+ -|+--+ |..|.+-=.. .+..||.|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPv-Cr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPV-CRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCcc-chhHHHHHhhcCcccccccCCCcc
Confidence 45599999986532 2343 444444 9999875443 4568999997654
No 236
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=47.96 E-value=22 Score=23.32 Aligned_cols=38 Identities=24% Similarity=0.615 Sum_probs=18.8
Q ss_pred cccccccCCceEEeC---CCCccchHHHHHHHhccCc--ccccc
Q 010920 446 CVICWEAPVEGACVP---CGHMAGCMSCLSEIKAKKG--DCPVC 484 (497)
Q Consensus 446 C~iC~~~~~~~~~~p---C~H~~~C~~C~~~~~~~~~--~Cp~C 484 (497)
|.+|.+-....+.=+ |+=.+ -..|.....+... +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~-H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRL-HDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE--HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchH-HHHHHHHHHhcCCCCCCcCC
Confidence 556666555444323 55555 7788888887443 79987
No 237
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.45 E-value=15 Score=36.30 Aligned_cols=28 Identities=32% Similarity=0.916 Sum_probs=23.0
Q ss_pred CCCCccchHHHHHHHhcc---Ccccccccccc
Q 010920 460 PCGHMAGCMSCLSEIKAK---KGDCPVCRTKI 488 (497)
Q Consensus 460 pC~H~~~C~~C~~~~~~~---~~~Cp~Cr~~i 488 (497)
-|||.| -..|..+|-.. ...||+|+-.+
T Consensus 25 ~cGhif-h~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 25 TCGHIF-HTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred chhhHH-HHHHHHHHHccCCccCCCCceeecc
Confidence 499999 99999999873 25899999444
No 238
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=45.13 E-value=9.7 Score=26.36 Aligned_cols=12 Identities=42% Similarity=1.171 Sum_probs=6.2
Q ss_pred Cccccccccccc
Q 010920 478 KGDCPVCRTKIN 489 (497)
Q Consensus 478 ~~~Cp~Cr~~i~ 489 (497)
...||+|.+++.
T Consensus 20 ~~~CPlC~r~l~ 31 (54)
T PF04423_consen 20 KGCCPLCGRPLD 31 (54)
T ss_dssp SEE-TTT--EE-
T ss_pred CCcCCCCCCCCC
Confidence 348999998874
No 239
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.36 E-value=11 Score=32.16 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=22.6
Q ss_pred CCccchHHHHHHHhccCccccccccccccee
Q 010920 462 GHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 492 (497)
Q Consensus 462 ~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~ 492 (497)
.+.| |..|..+... .||-|..+|.+..
T Consensus 27 ~~~f-C~kCG~~tI~---~Cp~C~~~IrG~y 53 (158)
T PF10083_consen 27 REKF-CSKCGAKTIT---SCPNCSTPIRGDY 53 (158)
T ss_pred HHHH-HHHhhHHHHH---HCcCCCCCCCCce
Confidence 4667 9999999886 8999999997653
No 240
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=43.29 E-value=9.3 Score=23.44 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=11.8
Q ss_pred CcccccccccccceeE
Q 010920 478 KGDCPVCRTKINQVIR 493 (497)
Q Consensus 478 ~~~Cp~Cr~~i~~~~~ 493 (497)
...||+|..+-..|+.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 4589999887666654
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.01 E-value=14 Score=40.37 Aligned_cols=42 Identities=29% Similarity=0.561 Sum_probs=31.1
Q ss_pred CcccccccccCCc-eEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 443 SSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 443 ~~~C~iC~~~~~~-~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
...|..|--..-- .|..-|||.| -..|.+ +...+||.|+...
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsy-HqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSY-HQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHH-HHHhhc---cCcccCCccchhh
Confidence 3589999865543 4455899999 999998 3335899998733
No 242
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.60 E-value=18 Score=31.48 Aligned_cols=49 Identities=27% Similarity=0.673 Sum_probs=35.5
Q ss_pred CCCCcccccccccCC-----c--eEEeCCCCccchHHHHHHHhcc------C-----ccccccccccc
Q 010920 440 DGSSSSCVICWEAPV-----E--GACVPCGHMAGCMSCLSEIKAK------K-----GDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~-----~--~~~~pC~H~~~C~~C~~~~~~~------~-----~~Cp~Cr~~i~ 489 (497)
.++-..|.||+.-.- + +--..||.-| -.-|...|.+. + +.||+|-.+|.
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpF-HqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPF-HQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcH-HHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 445568999986432 2 2235799888 88899999862 2 77999999885
No 243
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.53 E-value=12 Score=30.85 Aligned_cols=29 Identities=31% Similarity=0.831 Sum_probs=18.5
Q ss_pred CCCCccccccccc-CCceEEeCCCCccchHHHHHHH
Q 010920 440 DGSSSSCVICWEA-PVEGACVPCGHMAGCMSCLSEI 474 (497)
Q Consensus 440 ~~~~~~C~iC~~~-~~~~~~~pC~H~~~C~~C~~~~ 474 (497)
...+..|-||+.. ++| -|||. |.+|-.+.
T Consensus 62 v~ddatC~IC~KTKFAD----G~GH~--C~YCq~r~ 91 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD----GCGHN--CSYCQTRF 91 (169)
T ss_pred cCcCcchhhhhhccccc----ccCcc--cchhhhhH
Confidence 3455699999864 454 47887 55554443
No 244
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.01 E-value=14 Score=30.17 Aligned_cols=24 Identities=25% Similarity=0.665 Sum_probs=19.2
Q ss_pred ccchHHHHHHHhccCcccccccccccce
Q 010920 464 MAGCMSCLSEIKAKKGDCPVCRTKINQV 491 (497)
Q Consensus 464 ~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~ 491 (497)
.| |..|.+.... .||+|..+|..-
T Consensus 29 af-cskcgeati~---qcp~csasirgd 52 (160)
T COG4306 29 AF-CSKCGEATIT---QCPICSASIRGD 52 (160)
T ss_pred HH-HhhhchHHHh---cCCccCCccccc
Confidence 45 9999887764 899999998654
No 245
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=40.68 E-value=1.8e+02 Score=29.80 Aligned_cols=29 Identities=24% Similarity=0.686 Sum_probs=22.2
Q ss_pred CCcccccccccCCceEEeCCCCcc--chHHHHHHHhc
Q 010920 442 SSSSCVICWEAPVEGACVPCGHMA--GCMSCLSEIKA 476 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~pC~H~~--~C~~C~~~~~~ 476 (497)
.+.+|.||-|+-. |.|.- +|..|---+++
T Consensus 268 ~e~~CAVCgDnAa------CqHYGvRTCEGCKGFFKR 298 (605)
T KOG4217|consen 268 AEGLCAVCGDNAA------CQHYGVRTCEGCKGFFKR 298 (605)
T ss_pred ccceeeecCChHH------hhhcCccccccchHHHHH
Confidence 3679999999875 77754 39999776665
No 246
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=40.63 E-value=14 Score=39.77 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=30.3
Q ss_pred cccccccc----CCceEEeCCCCccchHHHHHHHhcc------Ccccccccccccc
Q 010920 445 SCVICWEA----PVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKINQ 490 (497)
Q Consensus 445 ~C~iC~~~----~~~~~~~pC~H~~~C~~C~~~~~~~------~~~Cp~Cr~~i~~ 490 (497)
.|-||+.. +....+-.|+|.+ |..|+..|..+ ...|++|..-|..
T Consensus 101 ~C~~E~S~~~ds~~i~P~~~~~~~~-CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 101 VCEKEHSPDVDSSNICPVQTHVENQ-CPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred hhheecCCcccccCcCchhhhhhhh-hhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 55555554 3333334599999 99999999863 4668888765543
No 247
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.18 E-value=17 Score=33.85 Aligned_cols=47 Identities=28% Similarity=0.611 Sum_probs=33.8
Q ss_pred CCCCcccccccccCCc----eEEeCCC-----CccchHHHHHHHhcc--------Cccccccccc
Q 010920 440 DGSSSSCVICWEAPVE----GACVPCG-----HMAGCMSCLSEIKAK--------KGDCPVCRTK 487 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~----~~~~pC~-----H~~~C~~C~~~~~~~--------~~~Cp~Cr~~ 487 (497)
.+.+..|-||+..-.| .-..||. |.+ -..|..+|... ...||.|+..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWV-HqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWV-HQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHH-HHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 4566799999975544 2345887 445 88999999862 3669999864
No 248
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=38.89 E-value=5.7 Score=22.89 Aligned_cols=21 Identities=38% Similarity=0.830 Sum_probs=12.1
Q ss_pred hHHHHHHHhccCccccccccc
Q 010920 467 CMSCLSEIKAKKGDCPVCRTK 487 (497)
Q Consensus 467 C~~C~~~~~~~~~~Cp~Cr~~ 487 (497)
|..|...+......||.|..+
T Consensus 5 Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 5 CPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CcccCCcCCcccccChhhCCC
Confidence 555555444444567777654
No 249
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.48 E-value=20 Score=37.08 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=28.9
Q ss_pred CCcccccccccCCc-eEEeCCCCccchHHHHHHHhc
Q 010920 442 SSSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKA 476 (497)
Q Consensus 442 ~~~~C~iC~~~~~~-~~~~pC~H~~~C~~C~~~~~~ 476 (497)
....|-||.+.... .+.+.|+|.| |..|......
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~-c~~cw~~yl~ 103 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPF-CPPCWTGYLG 103 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHH-HHHHHHHHhh
Confidence 44599999999885 7788999999 9999998665
No 250
>PLN02189 cellulose synthase
Probab=37.86 E-value=21 Score=40.35 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=32.6
Q ss_pred CCcccccccccCC----ceEEeCCC---CccchHHHHHHHhc-cCccccccccccc
Q 010920 442 SSSSCVICWEAPV----EGACVPCG---HMAGCMSCLSEIKA-KKGDCPVCRTKIN 489 (497)
Q Consensus 442 ~~~~C~iC~~~~~----~~~~~pC~---H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 489 (497)
....|.||-|..- .-.|+.|. --+ |..|.+--.. .+..||.|++..+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpv-Cr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPV-CRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCcc-ccchhhhhhhcCCccCcccCCchh
Confidence 3459999999743 23455554 445 9999976554 4568999998765
No 251
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=37.35 E-value=17 Score=34.80 Aligned_cols=43 Identities=21% Similarity=0.592 Sum_probs=24.6
Q ss_pred cCCceEEeCCCCccch--HHHHHHHhccCcccccccccccceeEee
Q 010920 452 APVEGACVPCGHMAGC--MSCLSEIKAKKGDCPVCRTKINQVIRLY 495 (497)
Q Consensus 452 ~~~~~~~~pC~H~~~C--~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~ 495 (497)
...--+++.|||+--. +.|-+.--.+..+||+||. +..+++++
T Consensus 313 ~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~-~gp~V~L~ 357 (429)
T KOG3842|consen 313 EKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRV-VGPYVPLW 357 (429)
T ss_pred ccCCeEEEeccccccccccccccccCcccCcCCeeee-ecceeeee
Confidence 3344678899998631 1122221113478999987 44466553
No 252
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.00 E-value=11 Score=37.31 Aligned_cols=38 Identities=24% Similarity=0.615 Sum_probs=0.0
Q ss_pred ceEEeCCCCccchHHHHHHHhc---cCcccccccccccceeEe
Q 010920 455 EGACVPCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQVIRL 494 (497)
Q Consensus 455 ~~~~~pC~H~~~C~~C~~~~~~---~~~~Cp~Cr~~i~~~~~~ 494 (497)
--+++.|||+.- +.=...-.. ....||+||. +..++++
T Consensus 303 P~VYl~CGHVhG-~h~Wg~~~~~~~~~r~CPlCr~-~g~~V~L 343 (416)
T PF04710_consen 303 PWVYLNCGHVHG-YHNWGQDSDRDPRSRTCPLCRQ-VGPYVPL 343 (416)
T ss_dssp -------------------------------------------
T ss_pred ceeeccccceee-ecccccccccccccccCCCccc-cCCceeE
Confidence 366789999883 211110011 2468999986 4444444
No 253
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.14 E-value=14 Score=22.95 Aligned_cols=15 Identities=20% Similarity=0.678 Sum_probs=11.1
Q ss_pred cccccccccccceeE
Q 010920 479 GDCPVCRTKINQVIR 493 (497)
Q Consensus 479 ~~Cp~Cr~~i~~~~~ 493 (497)
..||+|..+-..|.+
T Consensus 19 ~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 19 EKCPICGAPKEKFEE 33 (34)
T ss_pred CcCcCCCCchHHcEE
Confidence 589999887666543
No 254
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=35.86 E-value=13 Score=25.62 Aligned_cols=39 Identities=26% Similarity=0.592 Sum_probs=22.2
Q ss_pred CcccccccccCCceEEeCCCCccchHHHHHHHhc--cCccccccccccc
Q 010920 443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA--KKGDCPVCRTKIN 489 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~--~~~~Cp~Cr~~i~ 489 (497)
...|++|...+....+ +.-|...-.. ....||+|...+.
T Consensus 2 ~f~CP~C~~~~~~~~L--------~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL--------VEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CcCCCCCCCccCHHHH--------HHHHHhHCcCCCCCccCCCchhhhh
Confidence 3578998884332222 4444444433 2357999987543
No 255
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=33.66 E-value=33 Score=34.91 Aligned_cols=28 Identities=25% Similarity=0.659 Sum_probs=18.2
Q ss_pred cccccccccC----CceEEeCCCCccchHHHHH
Q 010920 444 SSCVICWEAP----VEGACVPCGHMAGCMSCLS 472 (497)
Q Consensus 444 ~~C~iC~~~~----~~~~~~pC~H~~~C~~C~~ 472 (497)
..|..|.-.+ ..-.+..||-.| |..|.-
T Consensus 902 ~~cmacq~pf~afrrrhhcrncggif-cg~cs~ 933 (990)
T KOG1819|consen 902 EQCMACQMPFNAFRRRHHCRNCGGIF-CGKCSC 933 (990)
T ss_pred hhhhhccCcHHHHHHhhhhcccCcee-eccccc
Confidence 3677776533 223456899999 888854
No 256
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.65 E-value=6.6 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=10.6
Q ss_pred hHHHHHHHhccCcccccccc
Q 010920 467 CMSCLSEIKAKKGDCPVCRT 486 (497)
Q Consensus 467 C~~C~~~~~~~~~~Cp~Cr~ 486 (497)
|..|...+......||.|.-
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CCCCcCCchhhcCcCCCCCC
Confidence 44454444444456777643
No 257
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=32.13 E-value=42 Score=22.44 Aligned_cols=31 Identities=32% Similarity=0.739 Sum_probs=24.2
Q ss_pred ccccccccCCceEEeCCCCccchHHHHHHHhcc
Q 010920 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK 477 (497)
Q Consensus 445 ~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~ 477 (497)
.|.||-....+.+.+ .+..+ |..|-.+|.+.
T Consensus 1 ~CiiC~~~~~~GI~I-~~~fI-C~~CE~~iv~~ 31 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKFI-CSDCEKEIVNT 31 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeEe-hHHHHHHhccC
Confidence 488999988886654 56666 99999998853
No 258
>PLN02436 cellulose synthase A
Probab=31.94 E-value=28 Score=39.46 Aligned_cols=47 Identities=26% Similarity=0.614 Sum_probs=32.3
Q ss_pred CCcccccccccCCc----eEEe---CCCCccchHHHHHHHhc-cCccccccccccc
Q 010920 442 SSSSCVICWEAPVE----GACV---PCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN 489 (497)
Q Consensus 442 ~~~~C~iC~~~~~~----~~~~---pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 489 (497)
....|.||-|..-. -.|+ -|+--+ |..|.+--.. .+..||.|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpv-Cr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPV-CRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCcc-ccchhhhhhhcCCccCcccCCchh
Confidence 34599999997522 2344 455556 9999976554 4568999998765
No 259
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=29 Score=32.10 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=27.8
Q ss_pred cccccccccCCceEEeCCCCccchHHHHHHHh
Q 010920 444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIK 475 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~ 475 (497)
..|+.|+....+++..|=||.| |.+|+....
T Consensus 44 dcCsLtLqPc~dPvit~~Gylf-drEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLF-DREAILEYI 74 (303)
T ss_pred ceeeeecccccCCccCCCCeee-eHHHHHHHH
Confidence 3888999999999999999999 999987654
No 260
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.42 E-value=21 Score=36.15 Aligned_cols=33 Identities=27% Similarity=0.720 Sum_probs=23.4
Q ss_pred CcccccccccCCce----EEeCCCCccchHHHHHHHhc
Q 010920 443 SSSCVICWEAPVEG----ACVPCGHMAGCMSCLSEIKA 476 (497)
Q Consensus 443 ~~~C~iC~~~~~~~----~~~pC~H~~~C~~C~~~~~~ 476 (497)
...|.||+...... ...-|+|.| |..|..+...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~f-C~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRF-CKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchh-hhHHhHHHhh
Confidence 45899999333221 134799999 9999987665
No 261
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=30.16 E-value=22 Score=27.61 Aligned_cols=36 Identities=31% Similarity=0.601 Sum_probs=27.4
Q ss_pred cccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920 444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 489 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 489 (497)
..|-||....... +|-| |..|+.+-- .|.+|...|-
T Consensus 45 ~~C~~CK~~v~q~-----g~~Y-Cq~CAYkkG----iCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKY-CQTCAYKKG----ICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCcc-ChhhhcccC----cccccCCeec
Confidence 4899998765432 6777 999977654 8999999883
No 262
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=27.69 E-value=5.4 Score=29.22 Aligned_cols=40 Identities=28% Similarity=0.640 Sum_probs=18.9
Q ss_pred ccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 445 SCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 445 ~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
.|+.|.......- +|.. |..|..... ....||-|..+++.
T Consensus 3 ~CP~C~~~L~~~~----~~~~-C~~C~~~~~-~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 3 TCPKCQQELEWQG----GHYH-CEACQKDYK-KEAFCPDCGQPLEV 42 (70)
T ss_dssp B-SSS-SBEEEET----TEEE-ETTT--EEE-EEEE-TTT-SB-EE
T ss_pred cCCCCCCccEEeC----CEEE-Cccccccce-ecccCCCcccHHHH
Confidence 6888877633221 4555 777766554 23468888777643
No 263
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.58 E-value=9.2 Score=31.50 Aligned_cols=45 Identities=27% Similarity=0.539 Sum_probs=30.7
Q ss_pred CCcccccccccC-----CceEEeCCCCccchHHHHHHHhc-cCccccccccc
Q 010920 442 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTK 487 (497)
Q Consensus 442 ~~~~C~iC~~~~-----~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~ 487 (497)
....|..|...+ ...+..-|+|.+ |..|...... ....|-+|...
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~V-C~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRV-CKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEE-ETTSEEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccc-cCccCCcCCCCCCEEChhhHHH
Confidence 445899998753 346677899999 9999776432 34679999763
No 264
>PRK01343 zinc-binding protein; Provisional
Probab=26.65 E-value=26 Score=24.62 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=7.2
Q ss_pred ccccccccccc
Q 010920 479 GDCPVCRTKIN 489 (497)
Q Consensus 479 ~~Cp~Cr~~i~ 489 (497)
..||+|++++.
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 46777777654
No 265
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.47 E-value=28 Score=29.87 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=21.8
Q ss_pred CCCCccccCCCCC----CccCCCCCcccccccccCC---ceEEeCCC
Q 010920 423 LHLPVLEDGVSAS----NVKDDGSSSSCVICWEAPV---EGACVPCG 462 (497)
Q Consensus 423 ~~~~~~~~~~~~~----~~~~~~~~~~C~iC~~~~~---~~~~~pC~ 462 (497)
...+.+.|++++. +.-..+...+|+||++... .+.-+||-
T Consensus 153 ~e~HlvMCLtkPrlsYNdDVL~ddkGECvICLEdL~~GdtIARLPCL 199 (205)
T KOG0801|consen 153 AEIHLVMCLTKPRLSYNDDVLKDDKGECVICLEDLEAGDTIARLPCL 199 (205)
T ss_pred ceEEEEEEecccccccccchhcccCCcEEEEhhhccCCCceeccceE
Confidence 3334455555552 1112355679999998653 24445775
No 266
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=24.84 E-value=29 Score=33.54 Aligned_cols=45 Identities=24% Similarity=0.515 Sum_probs=27.3
Q ss_pred ccccccccCCceEEeCCCCccchHHHHHH-----HhccCcccccccccccc
Q 010920 445 SCVICWEAPVEGACVPCGHMAGCMSCLSE-----IKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 445 ~C~iC~~~~~~~~~~pC~H~~~C~~C~~~-----~~~~~~~Cp~Cr~~i~~ 490 (497)
-|.|-...--++.+ -=-|+.+|..|..+ .....+.||.|...|..
T Consensus 228 g~~ivaNyGLdP~L-GKY~~TAC~rC~t~y~le~A~~~~wrCpkCGg~ikK 277 (403)
T COG1379 228 GCKIVANYGLDPRL-GKYHLTACSRCYTRYSLEEAKSLRWRCPKCGGKIKK 277 (403)
T ss_pred CceEEEecCcCccc-cchhHHHHHHhhhccCcchhhhhcccCcccccchhh
Confidence 45554444344433 12277789999843 33445789999987754
No 267
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=24.48 E-value=36 Score=23.16 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=11.7
Q ss_pred ccccccccccceeEe
Q 010920 480 DCPVCRTKINQVIRL 494 (497)
Q Consensus 480 ~Cp~Cr~~i~~~~~~ 494 (497)
.|+.|++||+....+
T Consensus 3 iCvvCK~Pi~~al~v 17 (53)
T PHA02610 3 ICVVCKQPIEKALVV 17 (53)
T ss_pred eeeeeCCchhhceEE
Confidence 799999999776543
No 268
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=22.84 E-value=29 Score=23.66 Aligned_cols=13 Identities=38% Similarity=0.986 Sum_probs=6.2
Q ss_pred Ccccccccccccc
Q 010920 478 KGDCPVCRTKINQ 490 (497)
Q Consensus 478 ~~~Cp~Cr~~i~~ 490 (497)
..+||+|...|.+
T Consensus 24 PatCP~C~a~~~~ 36 (54)
T PF09237_consen 24 PATCPICGAVIRQ 36 (54)
T ss_dssp -EE-TTT--EESS
T ss_pred CCCCCcchhhccc
Confidence 4578888776654
No 269
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=22.70 E-value=26 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.717 Sum_probs=16.1
Q ss_pred chHHHHHHHhccCccccccccc
Q 010920 466 GCMSCLSEIKAKKGDCPVCRTK 487 (497)
Q Consensus 466 ~C~~C~~~~~~~~~~Cp~Cr~~ 487 (497)
+|..|-.-+......||+|...
T Consensus 6 AC~~Ck~l~~~d~e~CP~Cgs~ 27 (64)
T COG2093 6 ACKNCKRLTPEDTEICPVCGST 27 (64)
T ss_pred HHhhccccCCCCCccCCCCCCc
Confidence 3888866666665679999865
No 270
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.88 E-value=26 Score=28.30 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=12.6
Q ss_pred hHHHHHHHhc---cCcccccccccc
Q 010920 467 CMSCLSEIKA---KKGDCPVCRTKI 488 (497)
Q Consensus 467 C~~C~~~~~~---~~~~Cp~Cr~~i 488 (497)
|..|..++.. .+..||.|...+
T Consensus 12 Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 12 CPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred CCCCcchhccCCCCCccCCCCCCcc
Confidence 4444444443 345688887654
No 271
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=21.84 E-value=61 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.735 Sum_probs=17.8
Q ss_pred ccchHHHHHHHhccCccccccccccc
Q 010920 464 MAGCMSCLSEIKAKKGDCPVCRTKIN 489 (497)
Q Consensus 464 ~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 489 (497)
.| |..|++.+.. ..||-|...+.
T Consensus 30 TF-C~~C~e~~l~--~~CPNCgGelv 52 (57)
T PF06906_consen 30 TF-CADCAETMLN--GVCPNCGGELV 52 (57)
T ss_pred cc-cHHHHHHHhc--CcCcCCCCccc
Confidence 45 9999999963 38999986553
No 272
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.44 E-value=91 Score=35.64 Aligned_cols=47 Identities=28% Similarity=0.646 Sum_probs=32.2
Q ss_pred CCcccccccccCCc-------eEEeCCCCccchHHHHHHHhc-cCccccccccccc
Q 010920 442 SSSSCVICWEAPVE-------GACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN 489 (497)
Q Consensus 442 ~~~~C~iC~~~~~~-------~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 489 (497)
....|.||-|..-- +.+--|+--+ |..|.+-=.+ .+..||.|++..+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPV-CrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPV-CRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCcc-ccchhhhhhhcCCccCCccCCchh
Confidence 44599999997422 3444555556 9999865443 4568999998664
No 273
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=20.78 E-value=58 Score=29.70 Aligned_cols=22 Identities=36% Similarity=0.970 Sum_probs=19.0
Q ss_pred hHHHHHHHhccCcccccccccc
Q 010920 467 CMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 467 C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
|..|-.++-+.-..||+|+..-
T Consensus 252 ClsChqqIHRNAPiCPlCKaKs 273 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAKS 273 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhcc
Confidence 9999999988778999998754
No 274
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.15 E-value=72 Score=30.26 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=31.3
Q ss_pred CCCcccccccccCCceEEe----CCCCccc-hHHHHHHHhccCcccccccc
Q 010920 441 GSSSSCVICWEAPVEGACV----PCGHMAG-CMSCLSEIKAKKGDCPVCRT 486 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~----pC~H~~~-C~~C~~~~~~~~~~Cp~Cr~ 486 (497)
+....|+||-..+...+.. --|=+|+ |.-|...|--.+.+|--|..
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~ 233 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQ 233 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccc
Confidence 4556999999988654332 1232333 88888888766678888865
No 275
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=20.14 E-value=44 Score=26.07 Aligned_cols=35 Identities=31% Similarity=0.687 Sum_probs=24.1
Q ss_pred cccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccc
Q 010920 444 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK 487 (497)
Q Consensus 444 ~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~ 487 (497)
..|..|.+.-..-. -|.+ |..|+.... .|+.|..+
T Consensus 56 ~kC~~C~qktVk~A----Yh~i-C~~Ca~~~~----vCaKC~k~ 90 (92)
T PF10217_consen 56 KKCNKCQQKTVKHA----YHVI-CDPCAKELK----VCAKCGKP 90 (92)
T ss_pred ccccccccchHHHH----HHHH-HHHHHHhhc----cCcccCCC
Confidence 36666665443222 2666 999999997 89999764
Done!