Query 010920
Match_columns 497
No_of_seqs 305 out of 4254
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 17:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 1.2E-32 4E-37 261.9 17.0 218 10-231 3-246 (253)
2 3b7b_A Euchromatic histone-lys 100.0 1.3E-31 4.4E-36 251.6 20.8 210 12-225 6-227 (237)
3 3ljn_A Hypothetical protein; a 100.0 5.6E-32 1.9E-36 271.2 18.6 221 10-234 13-270 (364)
4 1oy3_D Transcription factor in 100.0 9.4E-32 3.2E-36 259.0 19.2 203 13-219 5-269 (282)
5 3d9h_A CDNA FLJ77766, highly s 100.0 1.4E-31 4.7E-36 259.3 19.3 213 10-230 52-275 (285)
6 1k1a_A B-cell lymphoma 3-encod 100.0 8.4E-32 2.9E-36 253.3 16.6 215 12-230 4-238 (241)
7 4g8k_A 2-5A-dependent ribonucl 100.0 4.3E-31 1.5E-35 261.9 21.7 227 15-245 23-310 (337)
8 2xai_A ASB-9, ankyrin repeat a 100.0 3.8E-31 1.3E-35 252.7 20.4 209 16-232 2-221 (261)
9 2xai_A ASB-9, ankyrin repeat a 100.0 4.3E-31 1.5E-35 252.3 19.3 209 12-225 31-255 (261)
10 4gpm_A Engineered protein OR26 100.0 6.1E-31 2.1E-35 234.0 18.8 150 19-172 6-164 (169)
11 1wdy_A 2-5A-dependent ribonucl 100.0 2.9E-30 1E-34 248.4 24.3 215 14-232 36-277 (285)
12 2fo1_E LIN-12 protein; beta-ba 100.0 3.8E-31 1.3E-35 266.2 16.2 223 9-233 116-371 (373)
13 1n11_A Ankyrin; clathrin, BAND 100.0 2.9E-30 1E-34 265.1 23.0 214 14-231 11-235 (437)
14 3aji_A 26S proteasome non-ATPa 100.0 3.5E-30 1.2E-34 240.8 18.4 213 14-230 3-227 (231)
15 1wdy_A 2-5A-dependent ribonucl 100.0 1E-29 3.5E-34 244.7 22.1 226 16-245 4-262 (285)
16 2f8y_A Notch homolog 1, transl 100.0 3.2E-29 1.1E-33 233.0 23.0 184 14-232 22-215 (223)
17 4b93_B Ankyrin repeat domain-c 100.0 1.4E-30 4.7E-35 249.9 14.0 185 13-201 48-242 (269)
18 1n11_A Ankyrin; clathrin, BAND 100.0 2.1E-29 7.3E-34 258.6 23.8 217 12-232 42-269 (437)
19 3utm_A Tankyrase-1; tankyrase, 100.0 1.9E-29 6.6E-34 250.4 22.4 210 13-230 54-331 (351)
20 2rfa_A Transient receptor pote 100.0 2.8E-29 9.6E-34 234.9 21.1 187 16-231 2-220 (232)
21 2dzn_A Probable 26S proteasome 100.0 7.1E-30 2.4E-34 238.1 16.8 198 17-218 2-218 (228)
22 3eu9_A Huntingtin-interacting 100.0 3.1E-29 1.1E-33 235.1 19.6 217 13-233 5-235 (240)
23 4b93_B Ankyrin repeat domain-c 100.0 3.1E-30 1.1E-34 247.4 11.9 206 12-220 6-230 (269)
24 1yyh_A HN1;, notch 1, ankyrin 100.0 3.1E-29 1.1E-33 238.2 17.5 181 13-197 53-243 (253)
25 3d9h_A CDNA FLJ77766, highly s 100.0 1E-28 3.6E-33 239.0 20.7 185 12-201 87-280 (285)
26 3aji_A 26S proteasome non-ATPa 100.0 1E-28 3.6E-33 230.8 19.6 178 12-193 35-221 (231)
27 3utm_A Tankyrase-1; tankyrase, 100.0 1.3E-28 4.6E-33 244.3 20.8 217 13-233 20-305 (351)
28 1oy3_D Transcription factor in 100.0 1.4E-28 4.7E-33 236.8 17.0 173 12-188 40-269 (282)
29 3hra_A Ankyrin repeat family p 100.0 1.1E-27 3.7E-32 218.9 22.2 182 14-230 2-200 (201)
30 3b7b_A Euchromatic histone-lys 100.0 5.2E-28 1.8E-32 226.9 20.4 181 12-196 39-229 (237)
31 4g8k_A 2-5A-dependent ribonucl 100.0 9.8E-28 3.3E-32 237.7 22.8 212 15-235 57-328 (337)
32 1ikn_D Protein (I-kappa-B-alph 100.0 3.8E-29 1.3E-33 234.8 11.5 197 12-212 3-223 (236)
33 1k1a_A B-cell lymphoma 3-encod 100.0 4.9E-28 1.7E-32 227.5 19.0 179 11-193 40-232 (241)
34 2dzn_A Probable 26S proteasome 100.0 1E-27 3.4E-32 223.5 20.4 172 13-188 32-219 (228)
35 3kea_A K1L; tropism, ANK repea 100.0 1.5E-28 5.1E-33 237.9 15.3 198 5-233 19-220 (285)
36 1s70_B 130 kDa myosin-binding 100.0 7.2E-29 2.5E-33 241.2 13.1 204 14-219 37-276 (299)
37 2etb_A Transient receptor pote 100.0 3.3E-28 1.1E-32 231.3 14.1 188 17-232 2-245 (256)
38 2rfm_A Putative ankyrin repeat 100.0 4.8E-28 1.6E-32 219.9 14.3 152 12-167 30-190 (192)
39 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.2E-27 7.6E-32 211.0 18.0 150 14-167 11-169 (169)
40 1ihb_A P18-INK4C(INK6), cyclin 100.0 1E-27 3.5E-32 211.3 14.6 149 16-169 4-162 (162)
41 3ljn_A Hypothetical protein; a 99.9 2.4E-28 8.1E-33 244.7 11.2 212 11-228 47-309 (364)
42 3v31_A Ankyrin repeat family A 99.9 1.4E-27 4.9E-32 211.6 14.1 151 16-170 2-161 (167)
43 2pnn_A Transient receptor pote 99.9 7.7E-28 2.6E-32 231.1 12.5 194 12-232 8-257 (273)
44 3v30_A DNA-binding protein rfx 99.9 2.1E-27 7.3E-32 211.6 14.3 155 17-175 2-166 (172)
45 2fo1_E LIN-12 protein; beta-ba 99.9 2.1E-27 7.2E-32 238.8 15.5 183 11-197 160-366 (373)
46 1s70_B 130 kDa myosin-binding 99.9 9.6E-27 3.3E-31 226.2 19.1 172 12-187 68-275 (299)
47 3hra_A Ankyrin repeat family p 99.9 1E-26 3.5E-31 212.4 18.0 153 11-167 33-201 (201)
48 1ikn_D Protein (I-kappa-B-alph 99.9 2.6E-27 8.7E-32 222.3 14.3 157 11-171 39-211 (236)
49 2rfa_A Transient receptor pote 99.9 6.8E-27 2.3E-31 218.7 15.0 158 11-172 31-225 (232)
50 2f8y_A Notch homolog 1, transl 99.9 4.8E-26 1.6E-30 211.4 19.9 155 12-170 53-217 (223)
51 3jxi_A Vanilloid receptor-rela 99.9 1.8E-26 6.1E-31 219.8 15.4 190 14-231 2-248 (260)
52 2vge_A RELA-associated inhibit 99.9 5.8E-28 2E-32 225.9 4.7 184 13-225 17-205 (229)
53 3f6q_A Integrin-linked protein 99.9 2.7E-26 9.4E-31 205.9 15.5 157 15-175 3-169 (179)
54 3twr_A Tankyrase-2; ankyrin re 99.9 1.9E-26 6.4E-31 204.0 14.2 151 13-168 4-164 (165)
55 1awc_B Protein (GA binding pro 99.9 4.5E-26 1.5E-30 199.0 16.3 142 17-163 2-152 (153)
56 3kea_A K1L; tropism, ANK repea 99.9 1.4E-26 4.7E-31 224.1 12.9 188 7-206 52-252 (285)
57 2etb_A Transient receptor pote 99.9 1.1E-26 3.7E-31 220.9 11.7 154 13-170 39-247 (256)
58 4gpm_A Engineered protein OR26 99.9 2.3E-25 8E-30 197.8 18.6 149 52-235 6-163 (169)
59 1d9s_A Cyclin-dependent kinase 99.9 1.7E-26 5.8E-31 197.6 10.5 129 12-169 7-136 (136)
60 4hbd_A KN motif and ankyrin re 99.9 5.1E-26 1.7E-30 219.0 15.1 153 11-167 105-273 (276)
61 2pnn_A Transient receptor pote 99.9 2E-26 6.8E-31 221.3 12.1 155 13-169 50-258 (273)
62 3eu9_A Huntingtin-interacting 99.9 1.6E-25 5.5E-30 209.7 17.3 181 12-196 37-229 (240)
63 3jxi_A Vanilloid receptor-rela 99.9 3.2E-26 1.1E-30 218.0 11.2 156 14-171 43-252 (260)
64 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.6E-25 8.9E-30 194.6 15.8 144 17-166 2-155 (156)
65 4hbd_A KN motif and ankyrin re 99.9 9E-26 3.1E-30 217.3 13.1 181 15-230 74-272 (276)
66 2jab_A H10-2-G3; HER2, darpin, 99.9 4.1E-25 1.4E-29 189.0 14.5 126 14-167 11-136 (136)
67 1bi7_B P16INK4A, MTS1, multipl 99.9 1.1E-25 3.8E-30 197.2 11.3 141 13-182 8-149 (156)
68 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.3E-24 4.3E-29 182.5 15.7 126 16-169 1-126 (126)
69 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.8E-26 3E-30 212.6 9.5 156 14-174 2-169 (239)
70 1sw6_A Regulatory protein SWI6 99.9 2.3E-25 7.8E-30 219.8 11.1 161 13-185 127-324 (327)
71 3c5r_A BARD-1, BRCA1-associate 99.9 1.6E-24 5.5E-29 185.4 10.2 129 12-168 5-133 (137)
72 2rfm_A Putative ankyrin repeat 99.9 1.8E-23 6.3E-28 189.5 15.4 154 42-230 27-189 (192)
73 1sw6_A Regulatory protein SWI6 99.9 2.3E-24 7.7E-29 212.7 8.7 205 14-233 49-308 (327)
74 3aaa_C Myotrophin, protein V-1 99.9 2.2E-23 7.7E-28 174.8 12.4 117 14-158 4-120 (123)
75 3v30_A DNA-binding protein rfx 99.9 3.7E-23 1.3E-27 184.0 13.1 132 12-146 31-171 (172)
76 1ihb_A P18-INK4C(INK6), cyclin 99.9 2E-22 6.7E-27 177.2 17.3 150 49-232 4-161 (162)
77 3ehr_A Osteoclast-stimulating 99.9 1.9E-23 6.4E-28 194.1 10.5 135 12-174 68-203 (222)
78 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.9E-22 1.3E-26 177.0 17.6 149 47-230 11-168 (169)
79 3v31_A Ankyrin repeat family A 99.9 3.4E-22 1.2E-26 176.8 17.1 146 49-229 2-156 (167)
80 3t8k_A Uncharacterized protein 99.9 5.8E-24 2E-28 191.9 4.3 146 17-167 6-177 (186)
81 1awc_B Protein (GA binding pro 99.9 7.2E-22 2.5E-26 172.2 16.0 143 50-227 2-152 (153)
82 3deo_A Signal recognition part 99.9 2.1E-22 7.2E-27 181.3 11.2 113 13-154 40-153 (183)
83 2aja_A Ankyrin repeat family p 99.9 7E-24 2.4E-28 212.1 0.4 202 14-230 89-341 (376)
84 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.9E-21 1.3E-25 167.9 17.6 144 50-229 2-154 (156)
85 3ui2_A Signal recognition part 99.9 2.2E-22 7.4E-27 189.9 9.2 128 13-169 41-185 (244)
86 3lvq_E ARF-GAP with SH3 domain 99.9 1.1E-21 3.7E-26 204.6 14.8 144 16-184 131-280 (497)
87 2b0o_E UPLC1; arfgap, structur 99.9 7.8E-22 2.7E-26 191.9 12.8 134 16-174 150-289 (301)
88 1d9s_A Cyclin-dependent kinase 99.9 1.2E-21 4.1E-26 167.3 12.0 132 40-231 2-134 (136)
89 3f6q_A Integrin-linked protein 99.9 6.6E-21 2.3E-25 170.6 16.2 154 48-205 3-168 (179)
90 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.6E-21 1.6E-25 152.2 12.4 93 16-133 1-93 (93)
91 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.9E-22 1.7E-26 186.8 7.6 153 48-204 3-168 (239)
92 3t8k_A Uncharacterized protein 99.8 1.1E-21 3.7E-26 177.0 8.8 121 15-135 36-181 (186)
93 3twr_A Tankyrase-2; ankyrin re 99.8 1E-20 3.4E-25 166.9 14.7 137 46-186 4-150 (165)
94 1dcq_A PYK2-associated protein 99.8 8.7E-21 3E-25 182.4 15.0 129 17-170 130-264 (278)
95 3jue_A Arfgap with coiled-coil 99.8 8.6E-21 2.9E-25 189.0 13.3 128 14-169 196-326 (368)
96 2l6b_A NR1C; ankyrin, consensu 99.8 4.9E-21 1.7E-25 158.3 7.7 109 12-147 4-112 (115)
97 3c5r_A BARD-1, BRCA1-associate 99.8 4.2E-20 1.4E-24 157.7 13.5 119 40-187 1-119 (137)
98 2vge_A RELA-associated inhibit 99.8 2.7E-20 9.4E-25 173.7 11.9 153 33-213 1-161 (229)
99 2jab_A H10-2-G3; HER2, darpin, 99.8 1.4E-19 4.8E-24 154.3 14.3 126 46-230 10-135 (136)
100 1n0q_A 3ANK, 3 ankyrin repeats 99.8 9.5E-20 3.2E-24 144.5 11.9 93 49-169 1-93 (93)
101 1n0r_A 4ANK, 4 ankyrin repeats 99.8 4.7E-19 1.6E-23 148.2 15.2 125 49-232 1-125 (126)
102 1bi7_B P16INK4A, MTS1, multipl 99.8 3.7E-20 1.3E-24 161.9 7.6 134 43-236 5-139 (156)
103 3deo_A Signal recognition part 99.8 3.4E-21 1.2E-25 173.3 0.4 139 47-229 41-180 (183)
104 3ui2_A Signal recognition part 99.8 2.2E-21 7.7E-26 183.0 -2.2 168 15-229 13-181 (244)
105 3aaa_C Myotrophin, protein V-1 99.8 8.3E-19 2.8E-23 146.7 11.2 110 47-184 4-113 (123)
106 2b0o_E UPLC1; arfgap, structur 99.8 2.4E-19 8.2E-24 174.3 8.9 111 13-157 186-299 (301)
107 2aja_A Ankyrin repeat family p 99.8 9.1E-20 3.1E-24 182.3 2.6 157 17-192 65-240 (376)
108 2zgd_A 3 repeat synthetic anky 99.7 5.2E-18 1.8E-22 139.0 11.1 91 12-127 19-109 (110)
109 3ehr_A Osteoclast-stimulating 99.7 1.4E-18 4.7E-23 161.1 7.7 112 46-185 69-181 (222)
110 2l6b_A NR1C; ankyrin, consensu 99.7 1.7E-18 5.9E-23 142.9 7.4 102 45-174 4-105 (115)
111 1dcq_A PYK2-associated protein 99.7 1.3E-16 4.5E-21 153.2 17.6 165 13-230 62-260 (278)
112 3lvq_E ARF-GAP with SH3 domain 99.7 1.9E-17 6.5E-22 172.4 11.3 102 14-148 168-272 (497)
113 3jue_A Arfgap with coiled-coil 99.7 4.8E-17 1.6E-21 161.9 12.1 112 15-152 233-345 (368)
114 2zgd_A 3 repeat synthetic anky 99.7 1.3E-16 4.4E-21 130.6 10.2 93 43-163 17-109 (110)
115 2vje_A E3 ubiquitin-protein li 99.4 8.8E-14 3E-18 101.1 3.5 55 442-496 7-63 (64)
116 2vje_B MDM4 protein; proto-onc 99.4 1.4E-13 4.8E-18 99.7 3.5 55 442-496 6-62 (63)
117 2ea5_A Cell growth regulator w 99.3 6.8E-13 2.3E-17 97.4 3.7 53 440-496 12-64 (68)
118 2yho_A E3 ubiquitin-protein li 99.2 5.2E-12 1.8E-16 95.8 2.2 52 441-496 16-67 (79)
119 4ic3_A E3 ubiquitin-protein li 99.1 1.3E-11 4.4E-16 92.5 2.2 52 440-496 21-73 (74)
120 2ecn_A Ring finger protein 141 99.1 4.2E-11 1.4E-15 88.8 4.2 56 439-496 11-66 (70)
121 2d8t_A Dactylidin, ring finger 99.1 7.3E-11 2.5E-15 87.8 4.6 50 440-490 12-61 (71)
122 2ecg_A Baculoviral IAP repeat- 99.1 2.9E-11 9.9E-16 90.9 1.9 51 441-496 23-74 (75)
123 2csy_A Zinc finger protein 183 99.0 1.7E-10 5.7E-15 88.3 5.2 50 440-490 12-61 (81)
124 2djb_A Polycomb group ring fin 99.0 1.3E-10 4.5E-15 86.6 4.5 55 437-492 9-64 (72)
125 3ng2_A RNF4, snurf, ring finge 99.0 5.9E-11 2E-15 88.3 2.2 54 441-495 8-70 (71)
126 2xeu_A Ring finger protein 4; 99.0 9.4E-11 3.2E-15 85.2 2.9 54 442-496 2-64 (64)
127 2ysl_A Tripartite motif-contai 99.0 4.8E-10 1.6E-14 83.8 5.9 50 440-490 17-69 (73)
128 1chc_A Equine herpes virus-1 r 99.0 1.6E-10 5.4E-15 85.2 3.0 53 442-495 4-57 (68)
129 2kiz_A E3 ubiquitin-protein li 99.0 3.7E-10 1.3E-14 83.4 5.0 53 440-493 11-66 (69)
130 4ayc_A E3 ubiquitin-protein li 99.0 1.4E-10 4.8E-15 98.4 2.9 50 442-492 52-101 (138)
131 2ea6_A Ring finger protein 4; 99.0 2.1E-10 7.2E-15 84.7 3.0 50 440-490 12-68 (69)
132 2ecw_A Tripartite motif-contai 99.0 9.6E-10 3.3E-14 84.8 6.3 49 440-489 16-70 (85)
133 2ecm_A Ring finger and CHY zin 98.9 3.9E-10 1.3E-14 79.2 3.2 47 442-489 4-54 (55)
134 2ecy_A TNF receptor-associated 98.9 4.5E-10 1.5E-14 82.1 3.4 50 440-490 12-62 (66)
135 2yur_A Retinoblastoma-binding 98.9 5.2E-10 1.8E-14 83.8 3.6 49 439-488 11-62 (74)
136 2l0b_A E3 ubiquitin-protein li 98.9 6.9E-10 2.4E-14 86.7 4.2 50 440-490 37-89 (91)
137 1t1h_A Gspef-atpub14, armadill 98.9 9.9E-10 3.4E-14 83.2 4.9 49 440-489 5-54 (78)
138 2ep4_A Ring finger protein 24; 98.9 4.7E-10 1.6E-14 84.1 3.0 55 438-493 10-67 (74)
139 2ct2_A Tripartite motif protei 98.9 1.1E-09 3.8E-14 85.1 5.1 49 440-489 12-67 (88)
140 1iym_A EL5; ring-H2 finger, ub 98.9 5.9E-10 2E-14 78.2 3.0 47 441-488 3-53 (55)
141 2egp_A Tripartite motif-contai 98.9 2.3E-10 7.9E-15 87.0 0.6 49 440-489 9-64 (79)
142 2ecv_A Tripartite motif-contai 98.9 8.6E-10 2.9E-14 85.1 3.8 49 440-489 16-70 (85)
143 2ect_A Ring finger protein 126 98.9 1E-09 3.4E-14 83.2 3.4 50 440-490 12-64 (78)
144 3ztg_A E3 ubiquitin-protein li 98.9 1.5E-09 5.2E-14 85.1 4.4 49 439-488 9-60 (92)
145 1x4j_A Ring finger protein 38; 98.8 8.3E-10 2.8E-14 83.0 2.5 50 440-490 20-72 (75)
146 2ysj_A Tripartite motif-contai 98.8 3.9E-09 1.3E-13 76.3 5.6 44 440-484 17-63 (63)
147 1e4u_A Transcriptional repress 98.8 1.4E-09 4.9E-14 81.8 3.1 55 440-495 8-67 (78)
148 1g25_A CDK-activating kinase a 98.8 1.9E-09 6.6E-14 78.5 3.0 46 443-489 3-54 (65)
149 3lrq_A E3 ubiquitin-protein li 98.8 1.5E-09 5.3E-14 86.4 2.6 49 440-489 19-69 (100)
150 2ecj_A Tripartite motif-contai 98.8 4.1E-09 1.4E-13 74.8 4.0 44 440-484 12-58 (58)
151 2y43_A E3 ubiquitin-protein li 98.8 2.1E-09 7.1E-14 85.5 2.6 49 441-490 20-69 (99)
152 3fl2_A E3 ubiquitin-protein li 98.7 3.1E-09 1.1E-13 88.3 3.1 49 441-490 50-99 (124)
153 2ckl_A Polycomb group ring fin 98.7 5E-09 1.7E-13 84.7 4.0 50 440-490 12-62 (108)
154 2kr4_A Ubiquitin conjugation f 98.7 8.9E-09 3.1E-13 79.1 5.0 50 440-490 11-60 (85)
155 1bor_A Transcription factor PM 98.7 8.8E-10 3E-14 77.5 -1.2 46 440-489 3-48 (56)
156 2y1n_A E3 ubiquitin-protein li 98.7 7.6E-09 2.6E-13 101.0 5.0 51 443-494 332-383 (389)
157 1wgm_A Ubiquitin conjugation f 98.7 2.2E-08 7.6E-13 78.9 6.3 50 440-490 19-69 (98)
158 2kre_A Ubiquitin conjugation f 98.7 1.2E-08 4.2E-13 80.7 4.8 50 439-489 25-74 (100)
159 3t6p_A Baculoviral IAP repeat- 98.7 3.6E-09 1.2E-13 102.8 1.7 53 440-496 292-344 (345)
160 1z6u_A NP95-like ring finger p 98.7 7.2E-09 2.5E-13 88.8 3.1 49 441-490 76-125 (150)
161 3hct_A TNF receptor-associated 98.7 9.5E-09 3.3E-13 84.5 3.7 50 440-490 15-65 (118)
162 3l11_A E3 ubiquitin-protein li 98.6 4.4E-09 1.5E-13 86.1 0.9 49 441-490 13-62 (115)
163 2ckl_B Ubiquitin ligase protei 98.6 8.1E-09 2.8E-13 90.4 2.6 49 440-489 51-101 (165)
164 2ecl_A Ring-box protein 2; RNF 98.6 1.8E-08 6.2E-13 76.7 4.2 47 442-489 14-75 (81)
165 1v87_A Deltex protein 2; ring- 98.6 1.3E-08 4.3E-13 83.3 3.2 47 443-490 25-94 (114)
166 3knv_A TNF receptor-associated 98.6 1.9E-08 6.4E-13 85.2 3.7 48 440-488 28-76 (141)
167 1jm7_A BRCA1, breast cancer ty 98.6 1.1E-08 3.9E-13 83.2 2.1 48 442-490 20-70 (112)
168 1rmd_A RAG1; V(D)J recombinati 98.6 1.3E-08 4.5E-13 83.4 2.4 49 441-490 21-70 (116)
169 4ap4_A E3 ubiquitin ligase RNF 98.6 2.7E-08 9.3E-13 83.6 3.3 48 442-490 6-60 (133)
170 4ap4_A E3 ubiquitin ligase RNF 98.5 3.3E-08 1.1E-12 83.1 3.0 54 441-495 70-132 (133)
171 3dpl_R Ring-box protein 1; ubi 98.4 1.4E-07 4.9E-12 75.2 4.1 46 442-488 36-99 (106)
172 1jm7_B BARD1, BRCA1-associated 98.4 3.1E-08 1.1E-12 81.2 -0.2 46 441-489 20-66 (117)
173 2yu4_A E3 SUMO-protein ligase 98.4 1.2E-07 4.3E-12 74.2 3.2 53 441-494 5-69 (94)
174 2f42_A STIP1 homology and U-bo 98.4 1.9E-07 6.4E-12 81.5 3.6 50 440-490 103-153 (179)
175 3hcs_A TNF receptor-associated 98.4 1.9E-07 6.5E-12 82.0 3.7 50 440-490 15-65 (170)
176 2c2l_A CHIP, carboxy terminus 98.3 2.4E-07 8.3E-12 88.4 4.3 49 440-489 205-254 (281)
177 4a0k_B E3 ubiquitin-protein li 98.2 2.4E-07 8.2E-12 75.0 0.5 45 443-488 48-110 (117)
178 2bay_A PRE-mRNA splicing facto 98.1 1.7E-06 5.7E-11 61.5 3.4 52 443-495 3-57 (61)
179 2d8s_A Cellular modulator of i 98.0 3.3E-06 1.1E-10 63.5 3.0 49 441-490 13-70 (80)
180 3htk_C E3 SUMO-protein ligase 97.9 5.7E-06 2E-10 75.7 4.1 48 441-489 179-231 (267)
181 1wim_A KIAA0161 protein; ring 97.8 6.9E-06 2.4E-10 64.2 2.2 45 442-487 4-61 (94)
182 3vk6_A E3 ubiquitin-protein li 97.7 4.5E-05 1.5E-09 58.3 4.5 49 445-494 3-53 (101)
183 2ct0_A Non-SMC element 1 homol 97.3 0.00023 7.9E-09 52.2 4.8 50 440-490 12-64 (74)
184 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.00027 9.3E-09 49.7 2.9 49 440-489 3-58 (60)
185 3k1l_B Fancl; UBC, ring, RWD, 96.9 0.00019 6.6E-09 67.9 0.9 51 440-491 305-374 (381)
186 2ko5_A Ring finger protein Z; 94.6 0.02 6.8E-07 42.9 2.7 49 443-494 28-77 (99)
187 2cs3_A Protein C14ORF4, MY039 89.9 0.19 6.4E-06 36.3 2.6 34 442-476 14-51 (93)
188 3nw0_A Non-structural maintena 89.4 0.29 9.8E-06 44.6 4.2 47 443-490 180-229 (238)
189 2jun_A Midline-1; B-BOX, TRIM, 88.7 0.19 6.4E-06 39.1 2.1 30 443-473 3-35 (101)
190 2fiy_A Protein FDHE homolog; F 71.7 0.6 2E-05 44.2 -0.9 45 442-487 181-231 (309)
191 1wil_A KIAA1045 protein; ring 70.3 4.6 0.00016 29.6 3.7 44 440-485 12-74 (89)
192 1weo_A Cellulose synthase, cat 61.8 7.4 0.00025 28.8 3.4 47 442-489 15-69 (93)
193 2d8v_A Zinc finger FYVE domain 58.6 5.5 0.00019 27.7 2.1 34 440-475 5-39 (67)
194 3ql9_A Transcriptional regulat 52.7 11 0.00037 30.4 3.4 47 440-487 54-111 (129)
195 3m62_A Ubiquitin conjugation f 50.8 12 0.00042 40.6 4.4 53 437-490 885-938 (968)
196 3i2d_A E3 SUMO-protein ligase 50.1 7.4 0.00025 37.4 2.4 44 444-488 250-298 (371)
197 4fo9_A E3 SUMO-protein ligase 46.0 9.3 0.00032 36.6 2.3 44 444-488 216-264 (360)
198 1zbd_B Rabphilin-3A; G protein 44.3 2 6.7E-05 35.1 -2.3 45 442-487 54-107 (134)
199 2lbm_A Transcriptional regulat 42.1 22 0.00074 29.2 3.7 46 440-486 60-116 (142)
200 2csz_A Synaptotagmin-like prot 35.4 3.7 0.00013 29.6 -1.7 48 440-488 22-74 (76)
201 2lri_C Autoimmune regulator; Z 35.2 27 0.00093 24.3 2.8 44 443-487 12-59 (66)
202 2zet_C Melanophilin; complex, 34.4 4.7 0.00016 33.7 -1.5 45 442-487 67-117 (153)
203 2l5u_A Chromodomain-helicase-D 30.7 28 0.00097 23.7 2.3 46 440-486 8-57 (61)
204 1m3v_A FLIN4, fusion of the LI 23.2 44 0.0015 26.3 2.4 46 444-490 33-81 (122)
205 1mm2_A MI2-beta; PHD, zinc fin 22.1 15 0.0005 25.2 -0.5 47 440-487 6-56 (61)
206 3a1b_A DNA (cytosine-5)-methyl 22.0 63 0.0022 26.9 3.2 47 440-487 76-134 (159)
207 2yql_A PHD finger protein 21A; 21.8 15 0.00052 24.5 -0.5 46 440-486 6-55 (56)
208 3pwf_A Rubrerythrin; non heme 21.8 36 0.0012 28.8 1.7 27 460-494 143-169 (170)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.2e-32 Score=261.93 Aligned_cols=218 Identities=18% Similarity=0.101 Sum_probs=166.4
Q ss_pred hhhhcCCCchHHHHHHHcC-------------CHHHHHHHHHcCCCccc-cCCCCChHHHHHHHhCCcHHHHHHHHHcCC
Q 010920 10 QHQQRQSKDELLYQWVIAG-------------DVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGA 75 (497)
Q Consensus 10 ~~~~~~~G~T~Lh~Aa~~g-------------~~~~v~~Ll~~ga~~n~-~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga 75 (497)
...+|..|.||||+|+..| +.+++++|++.|++++. .|..|.||||+|+..|+ .+++++|+++|+
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR-SDAAKRLLEASA 81 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTC-HHHHHHHHHTTC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCC
Confidence 3456779999999999987 99999999999999865 48899999999999855 999999999999
Q ss_pred CCCCcCc---------ccCCCHHHHHHHHhCCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCC
Q 010920 76 NINAYRP---------AKRGLEPTVRLLLSCGA-NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPS 145 (497)
Q Consensus 76 ~~~~~~~---------~~~g~~~~v~~Ll~~ga-~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T 145 (497)
+++..+. +..|+.+++++|+++++ +++..+..|.||||+|+..|+.+++++|+++|++++ ..|..|.|
T Consensus 82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t 159 (253)
T 1yyh_A 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKS 159 (253)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCTTSCB
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCCCCCC
Confidence 9998765 77899999999999987 899999999999999999999999999999999999 89999999
Q ss_pred HHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHH--HhhcCCCCCCCCCCChHHHHHHhCChhH
Q 010920 146 FLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA--LWKAKIDEPKFHQPDPSLTIYDQATKIR 223 (497)
Q Consensus 146 ~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~g~~pl~~a~~~~~~~~ 223 (497)
||| +|+..++.+++++|+++|++.+..+..+.++++.+...++...+.. ..+++++..+..|.||+++|+.+++.+.
T Consensus 160 ~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 160 ALH-WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 238 (253)
T ss_dssp HHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHH
Confidence 999 9999999999999999999999888889999999987777655544 4888999999999999999999999999
Q ss_pred HHHHHhCC
Q 010920 224 YKFASANE 231 (497)
Q Consensus 224 ~~~l~~~~ 231 (497)
++++....
T Consensus 239 ~~~l~~~~ 246 (253)
T 1yyh_A 239 VRLLDLEH 246 (253)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 99887543
No 2
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.98 E-value=1.3e-31 Score=251.61 Aligned_cols=210 Identities=19% Similarity=0.166 Sum_probs=193.7
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN-HLEAVKYLIKAGALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHTTTCCCCCCCTTSCCHHHHH
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Confidence 45779999999999999999999999999999999999999999999985 59999999999999988765
Q ss_pred ccCCCHHHHHHHHhCC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920 83 AKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 161 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~g-a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~ 161 (497)
+..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||| +|+..++.++++
T Consensus 85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~~~ 161 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLH-WAAFSGCVDIAE 161 (237)
T ss_dssp HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHCCCHHHHH
Confidence 8889999999999998 8999999999999999999999999999999999999 89999999999 999999999999
Q ss_pred HhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHH
Q 010920 162 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYK 225 (497)
Q Consensus 162 ~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~ 225 (497)
+|+++|++.+..+..+.++++.+...+....+..+ .+++++..+..|.||+++|+.++....+.
T Consensus 162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~ 227 (237)
T 3b7b_A 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227 (237)
T ss_dssp HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999988888899999999988877665444 88899999999999999999988765443
No 3
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.98 E-value=5.6e-32 Score=271.19 Aligned_cols=221 Identities=13% Similarity=0.036 Sum_probs=201.3
Q ss_pred hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------- 82 (497)
Q Consensus 10 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------- 82 (497)
...+|..|.||||+||..|+.++|++|+++|++++.+|..|.||||+|+..| +.++|++|+++|++++..+.
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG-CVDTAKYLASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHC-CHHHHHHHHHHCCCCCCBTTBCHHHHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCccccCCCCHHHHH
Confidence 3445778999999999999999999999999999999999999999999995 59999999999998888555
Q ss_pred ccCCCHHHHHHHHhC----CCCCcc-----------------cCCCCCCHHHHHHHcC--CHHHHHHHHHCCCccccccc
Q 010920 83 AKRGLEPTVRLLLSC----GANALV-----------------RNDDCHTALGVARIKG--HINVVRAIESHICYFCGWLR 139 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~----ga~~~~-----------------~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~g~~i~~~~~ 139 (497)
+..|+.+++++|+++ |++++. .+..|.||||+|+..| +.+++++|+++|++++ ..
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~--~~ 169 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT--AK 169 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT--CC
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc--cc
Confidence 889999999999998 888777 8889999999999999 9999999999999999 89
Q ss_pred ccCCCCHHHHHhhhcCCHHHHHHhhhCCCC-----CCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChH
Q 010920 140 EFYGPSFLEALAPQLMSRKIWVVVIPCGTA-----NPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPS 212 (497)
Q Consensus 140 ~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~-----~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl 212 (497)
|..|.|||| +|+..|+.+++++|+++|++ .+..+..+.++++.+...++...+..| .+++++..+..|.|||
T Consensus 170 d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL 248 (364)
T 3ljn_A 170 DKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL 248 (364)
T ss_dssp CTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 999999999 99999999999999999998 777777899999999988887666555 8889999999999999
Q ss_pred HHHHHhCChhHHHHHHhCCCCH
Q 010920 213 LTIYDQATKIRYKFASANEGDK 234 (497)
Q Consensus 213 ~~a~~~~~~~~~~~l~~~~~~~ 234 (497)
++|+..++...+++|.+...+.
T Consensus 249 ~~A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 249 YLSVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp HHHHHTCCHHHHHHHHHHSCHH
T ss_pred HHHHHhChHHHHHHHHHcCCch
Confidence 9999999999999998775443
No 4
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.98 E-value=9.4e-32 Score=258.99 Aligned_cols=203 Identities=18% Similarity=0.121 Sum_probs=171.9
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~---~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------- 82 (497)
++..|.||||+|++.|+.++|++|+++|++ ++.+|..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 83 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKLYAAGAGVLVAERGGHTALH 83 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 567999999999999999999999999988 8899999999999999995 59999999999999998765
Q ss_pred --ccCCCHHHHHHHHhCCCC-----------------------------------------------CcccCCCCCCHHH
Q 010920 83 --AKRGLEPTVRLLLSCGAN-----------------------------------------------ALVRNDDCHTALG 113 (497)
Q Consensus 83 --~~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~~~~g~T~Lh 113 (497)
+..|+.+++++|+++|++ ++.++..|.||||
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence 788999999999998765 6778889999999
Q ss_pred HHHHcCCHHHHHHHHHCCCccccccccc-CCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHH
Q 010920 114 VARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA 192 (497)
Q Consensus 114 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~-~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ 192 (497)
+|+..|+.+++++|+++|++++ ..+. .|.|||| +|+..++.+++++|+++|++.+.++..+.++++.+...++...
T Consensus 164 ~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHH-HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence 9999999999999999999998 6664 5999999 9999999999999999999999888889999999988877655
Q ss_pred HHH--HhhcCCCCCCCCCCChHHHHHHhC
Q 010920 193 VIA--LWKAKIDEPKFHQPDPSLTIYDQA 219 (497)
Q Consensus 193 ~~~--l~~~~~~~~~~~g~~pl~~a~~~~ 219 (497)
+.. ..+++++..+..|.||++++....
T Consensus 241 v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 241 ARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHTTCCCCCCC--------------
T ss_pred HHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 444 488999999999999999887754
No 5
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.98 E-value=1.4e-31 Score=259.28 Aligned_cols=213 Identities=17% Similarity=0.141 Sum_probs=190.8
Q ss_pred hhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-------
Q 010920 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP------- 82 (497)
Q Consensus 10 ~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~------- 82 (497)
...++..|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~t~L~ 130 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG-HLSCVKILLKHGAQVNGVTADWHTPLF 130 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTT-CHHHHHHHHHTTCCSSCCCTTCCCHHH
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCC-cHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 3446889999999999999999999999999999999999999999999985 59999999999999998765
Q ss_pred --ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 010920 83 --AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW 160 (497)
Q Consensus 83 --~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv 160 (497)
+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++
T Consensus 131 ~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v 206 (285)
T 3d9h_A 131 NACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRACV 206 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHHHH
T ss_pred HHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcHHHH
Confidence 7889999999999999998754 459999999999999999999999999999 89999999999 99999999999
Q ss_pred HHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 161 VVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 161 ~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
++|+++|++.+. +..+.++++.+...++...+..| .+++++..+..|.|||++|+. ....+++|...
T Consensus 207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~ 275 (285)
T 3d9h_A 207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER 275 (285)
T ss_dssp HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence 999999999875 55688999999888877655444 889999999999999999993 34566666654
No 6
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=8.4e-32 Score=253.29 Aligned_cols=215 Identities=20% Similarity=0.132 Sum_probs=191.7
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~----~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----- 82 (497)
.+|.+|.||||+|++.|+.++|++|++ .|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT-LPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcC-CHHHHHHHHHcCCCccccCCCCCCH
Confidence 457799999999999999999999997 78999999999999999999985 59999999999999988765
Q ss_pred ----ccCCCHHHHHHHHhCCC----CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc-cCCCCHHHHHhhh
Q 010920 83 ----AKRGLEPTVRLLLSCGA----NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQ 153 (497)
Q Consensus 83 ----~~~g~~~~v~~Ll~~ga----~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~~G~T~Lh~~A~~ 153 (497)
+..|+.+++++|+++++ +++..+..|.||||+|+..|+.+++++|+++|++++ ..+ ..|.|||| +|+.
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~-~A~~ 159 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLI-HAVE 159 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHH-HHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHH-HHHH
Confidence 78899999999999987 888899999999999999999999999999999998 677 88999999 9999
Q ss_pred cCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 154 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 154 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
.++.+++++|+++|++.+..+..+.++++.+...+....+..+ .+++++..+..|.||+++|+..+..+.++.+...
T Consensus 160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence 9999999999999999998888899999999887776555444 8889999999999999999998888887766543
No 7
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=4.3e-31 Score=261.86 Aligned_cols=227 Identities=20% Similarity=0.161 Sum_probs=185.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----------
Q 010920 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRP----------- 82 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----------- 82 (497)
.+|.|+||.|++.|++++|++||++|+++|.++. .|+||||+|+.. ++.++|++||++|++++..+.
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 3589999999999999999999999999999876 499999999998 559999999999999887654
Q ss_pred -------------------------------ccCCCHHHHHHHHhCCCCCccc----------CCCCCCHHHHHHHcCCH
Q 010920 83 -------------------------------AKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGHI 121 (497)
Q Consensus 83 -------------------------------~~~g~~~~v~~Ll~~ga~~~~~----------~~~g~T~Lh~A~~~g~~ 121 (497)
+..|+.+++++|+++|++++.. +..|.||||+|+..|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 5677888888888888877643 34578888888888888
Q ss_pred HHHHHHHH-CCCcccccccccCCCCHHHHHhhhcCC----HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920 122 NVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL 196 (497)
Q Consensus 122 ~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~~~----~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l 196 (497)
++|++|++ .|++++ .+|..|.|+|| .++..+. ..++++|+++|++.+.++..+.++++.+...+....+..+
T Consensus 182 ~~v~~LL~~~gad~n--~~d~~g~t~l~-~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~L 258 (337)
T 4g8k_A 182 EVLKILLDEMGADVN--ACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 258 (337)
T ss_dssp HHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhccCCCcC--ccCCCCCcHHH-HHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHH
Confidence 88888885 588888 78888888888 4443322 4578888888888888877788888888888777666554
Q ss_pred ---hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCCHHHHHHHHHhhc
Q 010920 197 ---WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNACR 245 (497)
Q Consensus 197 ---~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~~~~l~~ac~ 245 (497)
.+.+++..+..|.||||+|+..++.+.+++|.+.+.+....+.|+.|+.
T Consensus 259 l~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~~L~~A~~ 310 (337)
T 4g8k_A 259 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARR 310 (337)
T ss_dssp HTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCCHHHHHHH
T ss_pred HHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence 4678888999999999999999999999999988777665556666655
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=3.8e-31 Score=252.67 Aligned_cols=209 Identities=18% Similarity=0.160 Sum_probs=185.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG 86 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g 86 (497)
+|.||||+|++.|+.++|++|+++|+++|.+|..|.||||+|+..|+ .+++++|+++|++++..+. +..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH-LSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 69999999999999999999999999999999999999999999954 9999999999999998765 7789
Q ss_pred CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++ ..|..|.|||| +|+..++.+++++|+++
T Consensus 81 ~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRACVKKLLES 156 (261)
T ss_dssp CHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--cCCCCCCCHHH-HHHHhCCHHHHHHHHHc
Confidence 99999999999999875 5569999999999999999999999999999 89999999999 99999999999999999
Q ss_pred CCCCCCCCcccccccccCCcCcCHHHHHH--HhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920 167 GTANPSKPLRFELVIYPSLQDVQPRAVIA--LWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG 232 (497)
Q Consensus 167 ga~~~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 232 (497)
|++.+. +..+.++++.+...++...+.. ..+++++..+..|.||+++|+.++. ..+++...+.
T Consensus 157 g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~--~~~~ll~~~~ 221 (261)
T 2xai_A 157 GADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREG 221 (261)
T ss_dssp TCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTCT--HHHHHHHC-C
T ss_pred CCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhcccccc--HHHHHHhccC
Confidence 999876 4468899999987777655544 4889999999999999999996544 5666665544
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=4.3e-31 Score=252.32 Aligned_cols=209 Identities=15% Similarity=0.128 Sum_probs=186.6
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------c
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------A 83 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~ 83 (497)
.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+. +
T Consensus 31 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~ 109 (261)
T 2xai_A 31 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG-SWDCVNLLLQHGASVQPESDLASPIHEAA 109 (261)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSSCSCTTCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Confidence 45679999999999999999999999999999999999999999999995 59999999999999886544 8
Q ss_pred cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L 163 (497)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+..|.|||| +|+..++.+++++|
T Consensus 110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~g~t~Lh-~A~~~~~~~~v~~L 185 (261)
T 2xai_A 110 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLH-AVARTASEELACLL 185 (261)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT---CCBTTBCHHH-HHHHHTCHHHHHHH
T ss_pred HcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC---CCCCCCChHH-HHHHcCCHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999998 5899999999 99999999999999
Q ss_pred hhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhc--------CCCCCCCCCCChHHHHHHhCChhHHH
Q 010920 164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA--------KIDEPKFHQPDPSLTIYDQATKIRYK 225 (497)
Q Consensus 164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~--------~~~~~~~~g~~pl~~a~~~~~~~~~~ 225 (497)
+++|++.+..+..+.++++.+........++...+. .+...+..|.++++.+........++
T Consensus 186 l~~gad~~~~d~~g~tpl~~A~~~~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~ 255 (261)
T 2xai_A 186 MDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255 (261)
T ss_dssp HHTTCCTTCCCTTSCCGGGGSCTTCTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHH
T ss_pred HHcCCCCCCcCCCCCChhhhccccccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHH
Confidence 999999999998999999999988887777765433 33456778888888777655544443
No 10
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=6.1e-31 Score=233.98 Aligned_cols=150 Identities=28% Similarity=0.326 Sum_probs=139.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHH
Q 010920 19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEP 89 (497)
Q Consensus 19 T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~ 89 (497)
++|+.||+.|+.++|++||++|+++|.+|..|+||||+|+..+ +.+++++|+++|++++.++. +..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~-~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG-HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 3799999999999999999999999999999999999999984 59999999999999998876 8899999
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920 90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~ 169 (497)
++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..|+.+++++|+++|++
T Consensus 85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 85 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLD-LAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999999 89999999999 99999999999999999998
Q ss_pred CCC
Q 010920 170 NPS 172 (497)
Q Consensus 170 ~~~ 172 (497)
++.
T Consensus 162 ie~ 164 (169)
T 4gpm_A 162 LEH 164 (169)
T ss_dssp ---
T ss_pred cCC
Confidence 754
No 11
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=2.9e-30 Score=248.45 Aligned_cols=215 Identities=19% Similarity=0.162 Sum_probs=142.8
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
+..|.||||+|++.|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+. +.
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 114 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG-SVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCccCcccCCHHHHHHH
Confidence 445667777777777777777777777777767767777777777763 37777777777766665543 55
Q ss_pred CCCHHHHHHHHhCCCCCccc----------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCcccccccccCCCCHHHHHhhh
Q 010920 85 RGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPSFLEALAPQ 153 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~----------~~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~i~~~~~~~~G~T~Lh~~A~~ 153 (497)
.|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++. |++++ ..+..|.|||| .|+.
T Consensus 115 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~-~a~~ 191 (285)
T 1wdy_A 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALI-HALL 191 (285)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHH-HHHH
T ss_pred hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCCCHHH-HHHH
Confidence 66777777777777666655 55666777777777777777777765 66666 56667777777 6666
Q ss_pred cCC----HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH---hhcCCCCCCCCCCChHHHHHHhCChhHHHH
Q 010920 154 LMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL---WKAKIDEPKFHQPDPSLTIYDQATKIRYKF 226 (497)
Q Consensus 154 ~~~----~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l---~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~ 226 (497)
.++ .+++++|+++|++.+..+..+.++++.+...++...+..+ .+.+++..+..|.|||++|+..+....+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~ 271 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHH
Confidence 666 6677777777776666665666666666666555444333 455666666777777777777777666666
Q ss_pred HHhCCC
Q 010920 227 ASANEG 232 (497)
Q Consensus 227 l~~~~~ 232 (497)
|.+.+.
T Consensus 272 Ll~~Ga 277 (285)
T 1wdy_A 272 LCKRGA 277 (285)
T ss_dssp HHHHSS
T ss_pred HHHcCC
Confidence 665443
No 12
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.97 E-value=3.8e-31 Score=266.15 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=198.0
Q ss_pred chhhhc-CCCchHHHHHHHcCCHHHHHHHH--------HcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCC
Q 010920 9 NQHQQR-QSKDELLYQWVIAGDVDAIRALR--------SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79 (497)
Q Consensus 9 ~~~~~~-~~G~T~Lh~Aa~~g~~~~v~~Ll--------~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~ 79 (497)
+...++ ..|.||||+|+..|+.+++++|+ +.|+++|.+|..|.||||+|+..| +.++|++|+++|++++.
T Consensus 116 ~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~ga~~~~ 194 (373)
T 2fo1_E 116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR-RRRLVAYLMKAGADPTI 194 (373)
T ss_dssp TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSCC
T ss_pred cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcC-hHHHHHHHHHCCCCCcc
Confidence 344455 68999999999999998888776 789999999999999999999995 59999999999999998
Q ss_pred cCc---------ccCCCHHHHHHHHhCC---CCCcccCCCCCCHHHHHHHcC---CHHHHHHHHHCCCcccc------cc
Q 010920 80 YRP---------AKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKG---HINVVRAIESHICYFCG------WL 138 (497)
Q Consensus 80 ~~~---------~~~g~~~~v~~Ll~~g---a~~~~~~~~g~T~Lh~A~~~g---~~~~v~~Ll~~g~~i~~------~~ 138 (497)
.+. +..|+.+++++|++++ ++++..|..|.||||+|+..+ +.+++++|+++|++++. ..
T Consensus 195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~ 274 (373)
T 2fo1_E 195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274 (373)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCc
Confidence 765 8899999999999998 899999999999999999998 89999999999999872 12
Q ss_pred cccCCCCHHHHHhhhcCCHHHHHHhhhCC-CCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHH
Q 010920 139 REFYGPSFLEALAPQLMSRKIWVVVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTI 215 (497)
Q Consensus 139 ~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a 215 (497)
.|..|.|||| +|+..|+.+++++|++++ ++.+..+..+.++++.+...++...+..| .+++++..+..|.|||++|
T Consensus 275 ~d~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A 353 (373)
T 2fo1_E 275 EKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 353 (373)
T ss_dssp SSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred ccccCCCHHH-HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence 5779999999 999999999999999876 89888888899999999988877655444 8899999999999999999
Q ss_pred HHhCChhHHHHHHhCCCC
Q 010920 216 YDQATKIRYKFASANEGD 233 (497)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~ 233 (497)
+.+++.+.+++|..++.+
T Consensus 354 ~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 354 QANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHTTCHHHHHHHHTTC--
T ss_pred HHcCCHHHHHHHHhcCcc
Confidence 999999999999877654
No 13
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=2.9e-30 Score=265.07 Aligned_cols=214 Identities=20% Similarity=0.130 Sum_probs=177.4
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
+.+|.||||+|++.|+.++|++|+++|++++.++..|.||||+|+..| +.+++++|+++|++++..+. +.
T Consensus 11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG-HTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp ----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHT-CHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence 448999999999999999999999999999999989999999999984 49999999999998887665 77
Q ss_pred CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920 85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 164 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll 164 (497)
.|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++++ ..+..|.|||| +|+..|+.+++++|+
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLH-VAAKYGKVRVAELLL 166 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence 889999999999999988888889999999999999999999988888887 77888888888 888888888888888
Q ss_pred hCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCC
Q 010920 165 PCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE 231 (497)
Q Consensus 165 ~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~ 231 (497)
++|++.+..+..+.++++.+...++...+..+ .+..+...+..|.+||++|+..+..+.+++|...+
T Consensus 167 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 88888777776777888888777776555444 56677777788888888888888888888887654
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=3.5e-30 Score=240.81 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=189.8
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A 83 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~ 83 (497)
+..+.||||.|++.|+.+.++.|++.+. .++.+|..|.||||+|+..| +.+++++|+++|++++..+. +
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-HTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcC-cHHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Confidence 3468899999999999999999998774 47788999999999999985 49999999999999988765 7
Q ss_pred cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L 163 (497)
..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||| +|+..++.+++++|
T Consensus 82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~L 158 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMH-RAAAKGNLKMVHIL 158 (231)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999998 88999999999 89999999999999
Q ss_pred hhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
+++|++.+..+..+.++++.+...++...+..+ .+++++..+..|.||+++|...+.....++|.+.
T Consensus 159 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred HhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 999999888888889999998887776555443 7889999999999999999998888888887654
No 15
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=1e-29 Score=244.66 Aligned_cols=226 Identities=18% Similarity=0.114 Sum_probs=199.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccC
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKR 85 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~-d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~ 85 (497)
+|.||||+|++.|+.++|++|++.|++++.. +..|.||||+|+..| +.+++++|+++|++++..+. +..
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS-REDIVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 6899999999999999999999999999988 788999999999985 59999999999999988765 788
Q ss_pred CCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccccccc----------ccCCCCHHHHHhhhcC
Q 010920 86 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR----------EFYGPSFLEALAPQLM 155 (497)
Q Consensus 86 g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~----------~~~G~T~Lh~~A~~~~ 155 (497)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++ .. +..|.|||| .|+..+
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~~~~~~~~~g~t~L~-~A~~~~ 159 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALM-DAAEKG 159 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCCCCHHHHHTTCCCCCHHH-HHHHHT
T ss_pred CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc--cccccHHHHHhhccCCCcHHH-HHHHcC
Confidence 99999999999999999999999999999999999999999999999998 55 788999999 999999
Q ss_pred CHHHHHHhhhC-CCCCCCCCcccccccccCCcCcC------HHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHH
Q 010920 156 SRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDVQ------PRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS 228 (497)
Q Consensus 156 ~~~iv~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~------~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~ 228 (497)
+.+++++|+++ |++.+..+..+.++++.+...+. +..++...+++++..+..|.||||+|+..++...+++|.
T Consensus 160 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp CHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 99999999987 99988888778888888776655 233445588999999999999999999999999999998
Q ss_pred h-CCC-----CHHHHHHHHHhhc
Q 010920 229 A-NEG-----DKHQLQWLDNACR 245 (497)
Q Consensus 229 ~-~~~-----~~~~~~~l~~ac~ 245 (497)
. .+. +....+.++.|+.
T Consensus 240 ~~~g~~~~~~~~~g~t~l~~A~~ 262 (285)
T 1wdy_A 240 EQEHIEINDTDSDGKTALLLAVE 262 (285)
T ss_dssp HSSSCCTTCCCTTSCCHHHHHHH
T ss_pred hccCCCccccCCCCCcHHHHHHH
Confidence 7 332 2333455555544
No 16
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=3.2e-29 Score=232.96 Aligned_cols=184 Identities=16% Similarity=0.067 Sum_probs=165.4
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CCCCcCc---------c
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRP---------A 83 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga-~~~~~~~---------~ 83 (497)
+..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++++ +++..+. +
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 100 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD-AQGVFQILIRNRATDLDARMHDGTTPLILAA 100 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence 678999999999999999999999999999999999999999999985 5999999999987 6766544 7
Q ss_pred cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L 163 (497)
..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|
T Consensus 101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~L 177 (223)
T 2f8y_A 101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETAKVL 177 (223)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHTCHHHHHHH
T ss_pred HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHH-HHHHcCCHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999998 88999999999 89999999999999
Q ss_pred hhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920 164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG 232 (497)
Q Consensus 164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 232 (497)
+++|++.+ ..+..|.+|+++|+..+..+.+++|.+.+.
T Consensus 178 l~~ga~~~-------------------------------~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 178 LDHFANRD-------------------------------ITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp HHTTCCTT-------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHcCCCCc-------------------------------cccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 99886653 334568899999999999999999987654
No 17
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=249.92 Aligned_cols=185 Identities=17% Similarity=0.140 Sum_probs=142.8
Q ss_pred hcCCCchHHHHHHHcCCH-HHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 13 QRQSKDELLYQWVIAGDV-DAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~-~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
.+..|.||||+|+..++. .++++|++.|+++|.+|.+|+||||+|+..|+ .++|++|++.|++++..+.
T Consensus 48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~-~~~v~~Ll~~~a~~~~~~~~g~t~l~~a 126 (269)
T 4b93_B 48 ADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGR-ADLIPLLLKHGANAGARNADQAVPLHLA 126 (269)
T ss_dssp ---------------------------CCCCTTCCCTTSCCHHHHHHHTTC-TTHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHhcCCCcCccCCCCCCccccc
Confidence 466899999999998876 48899999999999999999999999999855 9999999999999988766
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
+..++.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++ .++..|.|||| +|+..|+.++|++
T Consensus 127 ~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh-~A~~~g~~~~v~~ 203 (269)
T 4b93_B 127 CQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALH-EAVIEKHVFVVEL 203 (269)
T ss_dssp HHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHHHHHH
T ss_pred cccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHH-HHHHcCCHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999 89999999999 9999999999999
Q ss_pred hhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCC
Q 010920 163 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI 201 (497)
Q Consensus 163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 201 (497)
|+++|++.+..+..+.++++.+.+.+++..++......+
T Consensus 204 Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~ 242 (269)
T 4b93_B 204 LLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV 242 (269)
T ss_dssp HHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence 999999999888888999999887766555543333333
No 18
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=2.1e-29 Score=258.61 Aligned_cols=217 Identities=18% Similarity=0.111 Sum_probs=191.2
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
.++..|.||||+|++.|+.++|++|+++|+++|.++..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 42 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A 120 (437)
T 1n11_A 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG-HTNMVKLLLENNANPNLATTAGHTPLHIA 120 (437)
T ss_dssp CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT-CHHHHHHHHHHTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Confidence 34678999999999999999999999999999999999999999999984 59999999999999988765
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
+..|+.+++++|++++++++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||| +|+..++.+++++
T Consensus 121 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~ 197 (437)
T 1n11_A 121 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN--AAGKNGLTPLH-VAVHHNNLDIVKL 197 (437)
T ss_dssp HHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSCCCHHH-HHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHH
Confidence 77899999999999999988889999999999999999999999999999998 78899999999 8999999999999
Q ss_pred hhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920 163 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG 232 (497)
Q Consensus 163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 232 (497)
|+++|++....+..+.++++.+...++...+..+ .+.+++..+..|.|||++|+..++.+.+++|.....
T Consensus 198 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 269 (437)
T 1n11_A 198 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269 (437)
T ss_dssp HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence 9999988877776788888888877776555444 677888888889999999999999999888886543
No 19
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=1.9e-29 Score=250.36 Aligned_cols=210 Identities=18% Similarity=0.099 Sum_probs=135.3
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A 83 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~ 83 (497)
++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+. +
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~ 132 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG-HYEVTELLLKHGACVNAMDLWQFTPLHEAA 132 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCC-CHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 3456777777777777777777777777777777777777777777763 37777777777776666543 5
Q ss_pred cCCCHHHHHHHHhCCCCCcccC------------------------------------------------------CCCC
Q 010920 84 KRGLEPTVRLLLSCGANALVRN------------------------------------------------------DDCH 109 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~~~~~------------------------------------------------------~~g~ 109 (497)
..|+.+++++|+++|++++..+ ..|.
T Consensus 133 ~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 212 (351)
T 3utm_A 133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCC
T ss_pred HcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCC
Confidence 6667777777777766655433 3455
Q ss_pred CHHHHHHHc---CCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCc
Q 010920 110 TALGVARIK---GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ 186 (497)
Q Consensus 110 T~Lh~A~~~---g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~ 186 (497)
||||+|+.. +..+++++|+++|++++ .++..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+..
T Consensus 213 t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~ 289 (351)
T 3utm_A 213 TALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLH-VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289 (351)
T ss_dssp CHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 666666666 33566667777776666 56666777777 6666677777777777776666666666666666666
Q ss_pred CcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 187 DVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 187 ~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
.++...+..| .+++++..+..|.||+++| .....+++.+.
T Consensus 290 ~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~ 331 (351)
T 3utm_A 290 AGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSES 331 (351)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC
T ss_pred cCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhc
Confidence 5555443333 5666666666677766665 33445555443
No 20
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.8e-29 Score=234.92 Aligned_cols=187 Identities=17% Similarity=0.127 Sum_probs=162.8
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCC-----CCcCc-------
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI-----NAYRP------- 82 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~-----~~~~~------- 82 (497)
.|+||||+|++.|+.++|++|++. |++++.+|..|.||||+|+..| +.+++++|+++|+++ +..+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD-NLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC-CHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999998 9999999999999999999985 599999999999886 32222
Q ss_pred --ccCCCHHHHHHHHhCCCCCcccCC-------------CCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHH
Q 010920 83 --AKRGLEPTVRLLLSCGANALVRND-------------DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFL 147 (497)
Q Consensus 83 --~~~g~~~~v~~Ll~~ga~~~~~~~-------------~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~L 147 (497)
+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++ .+|..|.|||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t~L 158 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNTVL 158 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHH
Confidence 778999999999999999888765 79999999999999999999999999998 8899999999
Q ss_pred HHHhhhcCCHHHH----HHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhH
Q 010920 148 EALAPQLMSRKIW----VVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIR 223 (497)
Q Consensus 148 h~~A~~~~~~~iv----~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~ 223 (497)
| +|+..++.+++ ++|+++|++..... ..+..+..|.|||++|+..++.+.
T Consensus 159 ~-~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~-------------------------~~~~~~~~g~tpl~~A~~~g~~~~ 212 (232)
T 2rfa_A 159 H-ILILQPNKTFACQMYNLLLSYDGGDHLKS-------------------------LELVPNNQGLTPFKLAGVEGNIVM 212 (232)
T ss_dssp H-HHHTCSCHHHHHHHHHHHHHTTCSCSSCC-------------------------GGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred H-HHHHcCChHHHHHHHHHHHhcCCchhhhh-------------------------hhccCCCCCCCHHHHHHHcCCHHH
Confidence 9 89999998887 89999887653221 124567889999999999999999
Q ss_pred HHHHHhCC
Q 010920 224 YKFASANE 231 (497)
Q Consensus 224 ~~~l~~~~ 231 (497)
+++|.+.+
T Consensus 213 v~~Ll~~g 220 (232)
T 2rfa_A 213 FQHLMQKR 220 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99987653
No 21
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=7.1e-30 Score=238.13 Aligned_cols=198 Identities=16% Similarity=0.091 Sum_probs=175.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCc---Cc---------c
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGASLE-WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY---RP---------A 83 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n-~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~---~~---------~ 83 (497)
|.||||+|++.|+.++|++|++.|+++. .+|..|.||||+|+..| +.+++++|+++|++++.. +. +
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ-AHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcC-CHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 7899999999999999999999997754 48999999999999985 599999999999554432 22 7
Q ss_pred cCCCHHHHHHHHhCC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920 84 KRGLEPTVRLLLSCG--ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 161 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~g--a~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~ 161 (497)
..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 157 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIE 157 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHH
Confidence 889999999999998 8899999999999999999999999999999999999 89999999999 999999999999
Q ss_pred HhhhCC-CCCCCCCcccccccccCCcCcCHHHHHHH---hhcCCCCCCCCCCChHHHHHHh
Q 010920 162 VVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIAL---WKAKIDEPKFHQPDPSLTIYDQ 218 (497)
Q Consensus 162 ~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~~~~l---~~~~~~~~~~~g~~pl~~a~~~ 218 (497)
+|+++| ++.+..+..+.++++.+...++...+..+ .+++++..+..|.||+++|...
T Consensus 158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 999999 88888888899999999988877655444 5899999999999999998654
No 22
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=235.10 Aligned_cols=217 Identities=14% Similarity=0.067 Sum_probs=194.8
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----------
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------- 82 (497)
.|..|.|+||+|++.|+.+++++|++.|++++.++..|.||||+|+..| +.+++++|+++|++++....
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINN-RIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhC-CHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 3568999999999999999999999999999999999999999999985 59999999999998876542
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcC-CHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM-SRKIWV 161 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~-~~~iv~ 161 (497)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||| +|+..+ ..++++
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLM-WAAYRTHSVDPTR 160 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCSSTTHH
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHH-HHHHhCChHHHHH
Confidence 78899999999999999999999999999999999999999999999999999 89999999999 777555 489999
Q ss_pred HhhhCCCCCCCCCc-ccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920 162 VVIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD 233 (497)
Q Consensus 162 ~Ll~~ga~~~~~~~-~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~ 233 (497)
+|+..|++.+.... .+.++++.+...+....+..+ .+++++..+..|.||+++|+..+....+++|.+...+
T Consensus 161 ~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 99999999887765 688999999887776555444 7899999999999999999999999999999876544
No 23
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.1e-30 Score=247.39 Aligned_cols=206 Identities=19% Similarity=0.135 Sum_probs=160.9
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCC--------ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGAS--------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~--------~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~- 82 (497)
.+|+.+.++|+.||+.|+.++|++||+.|++ ++..+..|.||||+|+..++...++++|++.|+++|..+.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 4577889999999999999999999999875 4667888999999999886655789999999999998876
Q ss_pred --------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920 83 --------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 154 (497)
Q Consensus 83 --------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~ 154 (497)
+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++ .+|..|.|||| +|+..
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~-~A~~~ 162 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLI-YACSG 162 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HHHHT
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHC
Confidence 78999999999999999999999999999999999999999999999999999 89999999999 99999
Q ss_pred CCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCC
Q 010920 155 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQAT 220 (497)
Q Consensus 155 ~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~ 220 (497)
|+.+++++|+++|++.+..+..+.++++.+...++...+..| .+++++..+..|.|||++|+.++.
T Consensus 163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 999999999999999999888899999999988887665444 889999999999999999976553
No 24
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=3.1e-29 Score=238.21 Aligned_cols=181 Identities=18% Similarity=0.060 Sum_probs=169.2
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CCCCcCc---------
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRP--------- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga-~~~~~~~--------- 82 (497)
++..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++++ +++..+.
T Consensus 53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 131 (253)
T 1yyh_A 53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD-AQGVFQILIRNRATDLDARMHDGTTPLILA 131 (253)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCccccCCCCCcHHHHH
Confidence 4679999999999999999999999999999999999999999999995 5999999999987 7777654
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~-~A~~~~~~~~v~~ 208 (253)
T 1yyh_A 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETAKV 208 (253)
T ss_dssp HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHCCCHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999 89999999999 9999999999999
Q ss_pred hhhCCCCCCCCCcccccccccCCcCcCHHHHHHHh
Q 010920 163 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 197 (497)
Q Consensus 163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 197 (497)
|+++|++.+..+..+.++++.+.+.++...+..+.
T Consensus 209 Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 209 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243 (253)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999988888999999999888877766553
No 25
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=238.96 Aligned_cols=185 Identities=16% Similarity=0.147 Sum_probs=167.1
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------c
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------A 83 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~ 83 (497)
.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+. +
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~ 165 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG-SWDCVNLLLQHGASVQPESDLASPIHEAA 165 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCSSCSCTTSCHHHHHH
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-HHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Confidence 45679999999999999999999999999999999999999999999995 49999999999999886554 7
Q ss_pred cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920 84 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L 163 (497)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+..|.|||| +|+..++.+++++|
T Consensus 166 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~~~g~t~L~-~A~~~~~~~~v~~L 241 (285)
T 3d9h_A 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLH-AVVRTASEELACLL 241 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---CCBTTBCHHH-HHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC---CCCCCCCHHH-HHHHcCCHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999998 5899999999 99999999999999
Q ss_pred hhCCCCCCCCCcccccccccCCcCcCHHHHHHHh-hcCC
Q 010920 164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW-KAKI 201 (497)
Q Consensus 164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~ 201 (497)
+++|++.+..+..+.++++.+........++... ++++
T Consensus 242 l~~gad~~~~d~~g~t~l~~A~~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 242 MDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGASL 280 (285)
T ss_dssp HHTTCCTTCCCTTSCCGGGGSCTTSHHHHHHHHHC----
T ss_pred HHCCCCCCCcCCCCCCHHHHhcCccHHHHHHHHhhccCC
Confidence 9999999999989999999999666555555443 4443
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=1e-28 Score=230.79 Aligned_cols=178 Identities=19% Similarity=0.149 Sum_probs=165.9
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 113 (231)
T 3aji_A 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG-XDEIVKALLVKGAHVNAVNQNGCTPLHYA 113 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC-HHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 35779999999999999999999999999999999999999999999995 59999999999999988765
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++
T Consensus 114 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~ 190 (231)
T 3aji_A 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLH-LACDEERVEEAKF 190 (231)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHH-HHHHCCCHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999 89999999999 9999999999999
Q ss_pred hhhCCCCCCCCCcccccccccCCcCcCHHHH
Q 010920 163 VIPCGTANPSKPLRFELVIYPSLQDVQPRAV 193 (497)
Q Consensus 163 Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~ 193 (497)
|+++|++.+..+..+.++++.+...++...+
T Consensus 191 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~ 221 (231)
T 3aji_A 191 LVTQGASIYIENKEEKTPLQVAKGGLGLILK 221 (231)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHSCHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHhhHHHHHH
Confidence 9999999988888899999999865554433
No 27
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.96 E-value=1.3e-28 Score=244.31 Aligned_cols=217 Identities=17% Similarity=0.107 Sum_probs=195.2
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
++..|.|+||.|++.|+.+.|+.|+.. +.+++.+|..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN-RVRIVQLLLQHGADVHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence 456799999999999999999988875 7899999999999999999984 59999999999999998865
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccccccc-----------------------
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR----------------------- 139 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~----------------------- 139 (497)
+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus 99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~~~l~~a~~~~~~~~~~~~ 176 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT--LVNCHGKSAVDMAPTPELRERLTYE 176 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCcchHHHhhhhhHHHHHhh
Confidence 88999999999999999999999999999999999999999999999999876 33
Q ss_pred -------------------------------ccCCCCHHHHHhhhc---CCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920 140 -------------------------------EFYGPSFLEALAPQL---MSRKIWVVVIPCGTANPSKPLRFELVIYPSL 185 (497)
Q Consensus 140 -------------------------------~~~G~T~Lh~~A~~~---~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~ 185 (497)
+..|.|||| +|+.. +..+++++|+++|++.+..+..+.++++.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~-~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 255 (351)
T 3utm_A 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA 255 (351)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH-HHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH-HHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHH
Confidence 356779999 88887 5589999999999999988888999999999
Q ss_pred cCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920 186 QDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD 233 (497)
Q Consensus 186 ~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~ 233 (497)
..++...+..| .+++++..+..|.||||+|+..++.+.+++|...+.+
T Consensus 256 ~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad 305 (351)
T 3utm_A 256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 88877665444 7889999999999999999999999999999977654
No 28
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.96 E-value=1.4e-28 Score=236.81 Aligned_cols=173 Identities=19% Similarity=0.102 Sum_probs=147.5
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCC---------------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN--------------- 76 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~--------------- 76 (497)
.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|++++++
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 118 (282)
T 1oy3_D 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQD 118 (282)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC----------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcccc
Confidence 4567999999999999999999999999999999999999999999998 459999999998866
Q ss_pred --------------------------------CCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCC-CCCHHHH
Q 010920 77 --------------------------------INAYRP---------AKRGLEPTVRLLLSCGANALVRNDD-CHTALGV 114 (497)
Q Consensus 77 --------------------------------~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~-g~T~Lh~ 114 (497)
++..+. +..|+.+++++|+++|++++.++.. |.||||+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~ 198 (282)
T 1oy3_D 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198 (282)
T ss_dssp -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHH
Confidence 333332 7889999999999999999998854 9999999
Q ss_pred HHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCc
Q 010920 115 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV 188 (497)
Q Consensus 115 A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~ 188 (497)
|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.+++..+....
T Consensus 199 A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 199 AVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred HHHcCCHHHHHHHHHcCCCCc--ccccCCCCHHH-HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 999999999999999999999 89999999999 999999999999999999999998888999988877443
No 29
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=1.1e-27 Score=218.87 Aligned_cols=182 Identities=20% Similarity=0.191 Sum_probs=156.1
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------c
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------A 83 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~ 83 (497)
+..+.||||.|+..|+.+.++.|+..+. +++.+|..|.||||+|+..|+ .+++++|+++|++++..+. +
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-IEIAKALIDRGADINLQNSISDSPYLYAG 80 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3578999999999999999999999886 999999999999999999954 9999999999999887765 7
Q ss_pred cCCCHHHHHHHH-hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CcccccccccCCCCHHHHHhhhcCC-----
Q 010920 84 KRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMS----- 156 (497)
Q Consensus 84 ~~g~~~~v~~Ll-~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~~G~T~Lh~~A~~~~~----- 156 (497)
..|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++ .+|..|.|||| +|+..+.
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~-~A~~~~~~~~~~ 157 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALI-EAVGLREGNQLY 157 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHH-HHHHSSCCSHHH
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHH-HHHHhccchhhH
Confidence 788888888888 567788888888888888888888888888888888 7887 78888888888 7877776
Q ss_pred HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 157 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 157 ~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
.+++++|+++|++. +..+..|.|||++|+..++.+.+++|.+.
T Consensus 158 ~~~v~~Ll~~ga~~-------------------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 158 QDIVKLLMENGADQ-------------------------------SIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHHHTTCCT-------------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCC-------------------------------CccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 88888888887654 34456789999999999999999988754
No 30
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.96 E-value=5.2e-28 Score=226.94 Aligned_cols=181 Identities=19% Similarity=0.206 Sum_probs=168.4
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcC-CCCCCcCc--------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRP-------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~g-a~~~~~~~-------- 82 (497)
.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..| +.+++++|++++ .+++..+.
T Consensus 39 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~ 117 (237)
T 3b7b_A 39 TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117 (237)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTT-CHHHHHHHHTTTCCCTTCCCTTSCCHHHH
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCcccCCCCCCCHHHH
Confidence 34668999999999999999999999999999999999999999999985 599999999998 78877655
Q ss_pred -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920 83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 161 (497)
Q Consensus 83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~ 161 (497)
+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++ ..|..|.|||| +|+..++.++++
T Consensus 118 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 194 (237)
T 3b7b_A 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLH-IAARENRYDCVV 194 (237)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHhHHH
Confidence 78899999999999999999999999999999999999999999999999999 89999999999 999999999999
Q ss_pred HhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920 162 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL 196 (497)
Q Consensus 162 ~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l 196 (497)
+|+++|++.+..+..+.++++.+...++...++.+
T Consensus 195 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l 229 (237)
T 3b7b_A 195 LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229 (237)
T ss_dssp HHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred HHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998888899999999988887665543
No 31
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=9.8e-28 Score=237.65 Aligned_cols=212 Identities=17% Similarity=0.089 Sum_probs=184.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHcCCCc---------------------------------cccCCCCChHHHHHHHhC
Q 010920 15 QSKDELLYQWVIAGDVDAIRALRSQGASL---------------------------------EWMDKEGKTPLIVACMDS 61 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~---------------------------------n~~d~~G~TpLh~Aa~~g 61 (497)
..|.||||+|++.|+.++|++||++|+++ +.+|..|.||||+|+..|
T Consensus 57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~ 136 (337)
T 4g8k_A 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 136 (337)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcC
Confidence 45999999999999999999999998765 456778999999999984
Q ss_pred CcHHHHHHHHHcCCCCCCcCc-------------------ccCCCHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCC-
Q 010920 62 GLINVAKTLIELGANINAYRP-------------------AKRGLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGH- 120 (497)
Q Consensus 62 ~~~~~v~~Ll~~ga~~~~~~~-------------------~~~g~~~~v~~Ll~-~ga~~~~~~~~g~T~Lh~A~~~g~- 120 (497)
+.+++++|+++|++++.... +..|+.++|++||+ .|++++.+|..|.|+||.++..++
T Consensus 137 -~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~ 215 (337)
T 4g8k_A 137 -KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 215 (337)
T ss_dssp -CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT
T ss_pred -cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc
Confidence 59999999999999887532 67899999999995 699999999999999999886654
Q ss_pred ---HHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC-CCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920 121 ---INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDVQPRAVIAL 196 (497)
Q Consensus 121 ---~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l 196 (497)
..++++|+++|++++ .+|..|.|||| +|+..++.+++++|+.. |++.+.++..+.++++.+...++...+..|
T Consensus 216 ~~~~~i~~lLl~~gad~n--~~d~~g~t~L~-~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L 292 (337)
T 4g8k_A 216 SDVEAITHLLLDHGADVN--VRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 292 (337)
T ss_dssp TTHHHHHHHHHHTTCCTT--CCCGGGCCHHH-HHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 468899999999999 89999999999 99999999999999975 889988888899999999988887666555
Q ss_pred --hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCCHH
Q 010920 197 --WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKH 235 (497)
Q Consensus 197 --~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~ 235 (497)
.|+++ +..+||++|+.+++.+.+++|.+++.+.+
T Consensus 293 l~~GAd~-----n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 293 CKRGAST-----DCGDLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp HTTSCSS-----TTCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred HHCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 55555 35679999999999999999998876654
No 32
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=3.8e-29 Score=234.84 Aligned_cols=197 Identities=18% Similarity=0.169 Sum_probs=157.4
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc-----
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGA----SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP----- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga----~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~----- 82 (497)
++|.+|.||||+|+..|+.+++++|++.+. ++|.+|..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN-QPEIAEALLGAGCDPELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTT-CHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 457799999999999999999999988764 78999999999999999985 49999999999999988765
Q ss_pred ----ccCCCHHHHHHHHhCCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccccccccc-CCCCHHHHHh
Q 010920 83 ----AKRGLEPTVRLLLSCGAN------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALA 151 (497)
Q Consensus 83 ----~~~g~~~~v~~Ll~~ga~------~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~-~G~T~Lh~~A 151 (497)
+..|+.+++++|++++++ ++..+..|.||||+|+..|+.+++++|+++|++++ .++. .|.|||| +|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A 158 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALH-LA 158 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCCHHH-HH
Confidence 778999999999998875 46678889999999999999999999999999998 7776 8999999 89
Q ss_pred hhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCC--CCCCCCCChH
Q 010920 152 PQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKID--EPKFHQPDPS 212 (497)
Q Consensus 152 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~--~~~~~g~~pl 212 (497)
+..++.+++++|+++|++.+..+..+.++++.+...++...+..| .+++.. .++..+.++.
T Consensus 159 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~ 223 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223 (236)
T ss_dssp HHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCC
T ss_pred HHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHH
Confidence 999999999999999988877776677777777766665544443 344332 4555555543
No 33
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.96 E-value=4.9e-28 Score=227.47 Aligned_cols=179 Identities=18% Similarity=0.159 Sum_probs=164.8
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC----CCCCcCc----
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYRP---- 82 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga----~~~~~~~---- 82 (497)
..++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++++ +++..+.
T Consensus 40 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~g~t 118 (241)
T 1k1a_A 40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR-SPTCLRALLDSAAPGTLDLEARNYDGLT 118 (241)
T ss_dssp CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSCTTSCCTTCCCTTSCC
T ss_pred CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCccccccccCcCCCc
Confidence 345678999999999999999999999999999999999999999999985 5999999999987 6666554
Q ss_pred -----ccCCCHHHHHHHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCC
Q 010920 83 -----AKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 156 (497)
Q Consensus 83 -----~~~g~~~~v~~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~ 156 (497)
+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++
T Consensus 119 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~ 195 (241)
T 1k1a_A 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALH-SASGRGL 195 (241)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCC
Confidence 78899999999999999999998 889999999999999999999999999999 89999999999 9999999
Q ss_pred HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH
Q 010920 157 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV 193 (497)
Q Consensus 157 ~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~ 193 (497)
.+++++|+++|++.+..+..+.++++.+...+....+
T Consensus 196 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~ 232 (241)
T 1k1a_A 196 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence 9999999999999998888899999999976655444
No 34
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=1e-27 Score=223.50 Aligned_cols=172 Identities=16% Similarity=0.093 Sum_probs=159.9
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcC--CCccc-cCCCCChHHHHHHHhCCcHHHHHHHHHcC--CCCCCcCc-----
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQG--ASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELG--ANINAYRP----- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~g--a~~n~-~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~g--a~~~~~~~----- 82 (497)
++..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+..|+ .+++++|+++| ++++..+.
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~~~g~t~ 110 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN-LEVVKSLYDRPLKPDLNKITNQGVTC 110 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCC-HHHHHHHHSSSSCCCTTCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCC-HHHHHHHHhCCCCcccccCCcCCCCH
Confidence 5789999999999999999999999999 66666 78899999999999955 99999999998 77777654
Q ss_pred ----ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CcccccccccCCCCHHHHHhhhcCCH
Q 010920 83 ----AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMSR 157 (497)
Q Consensus 83 ----~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~~G~T~Lh~~A~~~~~~ 157 (497)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++| ++++ .+|..|.|||| +|+..++.
T Consensus 111 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~-~A~~~~~~ 187 (228)
T 2dzn_A 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAEGHG 187 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHTTCH
T ss_pred HHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHH-HHHHcCCH
Confidence 7889999999999999999999999999999999999999999999999 9998 89999999999 99999999
Q ss_pred HHHHHhh-hCCCCCCCCCcccccccccCCcCc
Q 010920 158 KIWVVVI-PCGTANPSKPLRFELVIYPSLQDV 188 (497)
Q Consensus 158 ~iv~~Ll-~~ga~~~~~~~~~~~~l~~~~~~~ 188 (497)
+++++|+ ++|++.+..+..+.++++.+.+..
T Consensus 188 ~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp HHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred HHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence 9999999 999999998888999999998553
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=1.5e-28 Score=237.86 Aligned_cols=198 Identities=15% Similarity=0.064 Sum_probs=121.2
Q ss_pred hhhhchhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCccc
Q 010920 5 LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAK 84 (497)
Q Consensus 5 l~~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~ 84 (497)
|.+.+...+|..|.||||+|+..|+.++|++|+++|++++.+| |.||||+|+..|+ .+++++|+++|++++.
T Consensus 19 L~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~-~~~v~~Ll~~ga~~~~----- 90 (285)
T 3kea_A 19 LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLED-TKIVKILLFSGLDDSQ----- 90 (285)
T ss_dssp HHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSS-CHHHHHHHHTTCCTTC-----
T ss_pred HHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCC-HHHHHHHHHCCCCCCC-----
Confidence 4444556678899999999999999999999999999998884 8999999999844 7777777766666654
Q ss_pred CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCC-CCHHHHHhhhcCCHHHHHHh
Q 010920 85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYG-PSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G-~T~Lh~~A~~~~~~~iv~~L 163 (497)
+|..|.||||+|+..|+.+++++|+++|++++ ..+..| .|||| +|+..++.+++++|
T Consensus 91 -------------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~g~~t~L~-~A~~~~~~~~v~~L 148 (285)
T 3kea_A 91 -------------------FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM--FYGKTGWKTSFY-HAVMLNDVSIVSYF 148 (285)
T ss_dssp -------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG--GCSSSGGGSHHH-HHHHTTCHHHHHHH
T ss_pred -------------------cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC--ccCCCCCCCHHH-HHHHcCCHHHHHHH
Confidence 44444555555555555555555555555444 444444 45555 44444555555555
Q ss_pred hhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCCh-HHHHHHhCChhHHHHHHhCCCC
Q 010920 164 IPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDP-SLTIYDQATKIRYKFASANEGD 233 (497)
Q Consensus 164 l~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~p-l~~a~~~~~~~~~~~l~~~~~~ 233 (497)
+++|++..... .+.++++.+...++...+..| .+++++..+..|.|| ||+|+..+..+.+++|...+.+
T Consensus 149 l~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad 220 (285)
T 3kea_A 149 LSEIPSTFDLA-ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220 (285)
T ss_dssp HTTSCTTCCCS-THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred HhCCCcccccc-CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence 54444432221 244444444444433332222 444555555666665 6666666666666666655433
No 36
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.96 E-value=7.2e-29 Score=241.23 Aligned_cols=204 Identities=18% Similarity=0.147 Sum_probs=180.0
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
+.+|.||||.|+..|+.++|++|+++|+++|.+|..|.||||+|+..| +.+++++|+++|++++..+. +.
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~ 115 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD-NVDMVKFLVENGANINQPDNEGWIPLHAAAS 115 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 557899999999999999999999999999999999999999999985 59999999999999998765 88
Q ss_pred CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCcccc------------------------ccc
Q 010920 85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCG------------------------WLR 139 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~------------------------~~~ 139 (497)
.|+.+++++|+++|++++..+..|.||||+|+..++.++++.|+. .+.+++. ...
T Consensus 116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 195 (299)
T 1s70_B 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195 (299)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence 899999999999999999999999999999999999999987764 3333320 135
Q ss_pred ccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcCCCCCCCCCCChHHHHHH
Q 010920 140 EFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAKIDEPKFHQPDPSLTIYD 217 (497)
Q Consensus 140 ~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~g~~pl~~a~~ 217 (497)
+..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+...++...+..| .+++++..+..|.||+++|..
T Consensus 196 ~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 196 AKSGGTALH-VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp TTTCCCHHH-HHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred cCCCCCHHH-HHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 678999999 99999999999999999999998888899999999988877665444 888999999999999999865
Q ss_pred hC
Q 010920 218 QA 219 (497)
Q Consensus 218 ~~ 219 (497)
..
T Consensus 275 ~~ 276 (299)
T 1s70_B 275 DI 276 (299)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 37
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=3.3e-28 Score=231.35 Aligned_cols=188 Identities=15% Similarity=0.112 Sum_probs=140.1
Q ss_pred CchHHHHHHHcCCHH----HHHHHHHcCCCccc----cCCCCChHHHHHHHh---CCcHHHHHHHHHcCCCCCCcC----
Q 010920 17 KDELLYQWVIAGDVD----AIRALRSQGASLEW----MDKEGKTPLIVACMD---SGLINVAKTLIELGANINAYR---- 81 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~----~v~~Ll~~ga~~n~----~d~~G~TpLh~Aa~~---g~~~~~v~~Ll~~ga~~~~~~---- 81 (497)
|+||||+|++.|+.+ ++++|++.|++++. +|..|.||||+|+.. |+ .+++++|+++|++++..+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~-~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGV-NACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTB-CTTHHHHHHHHHHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccch-HHHHHHHHhcCCcccchhhhcc
Confidence 889999999999997 66777889999998 899999999999997 65 999999999988776322
Q ss_pred ---------c-------ccCCCHHHHHHHHhCCCCCcccCCC-------------CCCHHHHHHHcCCHHHHHHHHH---
Q 010920 82 ---------P-------AKRGLEPTVRLLLSCGANALVRNDD-------------CHTALGVARIKGHINVVRAIES--- 129 (497)
Q Consensus 82 ---------~-------~~~g~~~~v~~Ll~~ga~~~~~~~~-------------g~T~Lh~A~~~g~~~~v~~Ll~--- 129 (497)
+ +..|+.+++++|+++|++++.++.. |.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 1 5566666666666666666666654 6666666666666666666666
Q ss_pred CCCcccccccccCCCCHHHHHhhh--cCCHH-------HHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920 130 HICYFCGWLREFYGPSFLEALAPQ--LMSRK-------IWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK 200 (497)
Q Consensus 130 ~g~~i~~~~~~~~G~T~Lh~~A~~--~~~~~-------iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 200 (497)
+|++++ .+|..|.|||| +|+. .++.+ ++++|+++|++..... ..
T Consensus 161 ~ga~~n--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~------------------------~~ 213 (256)
T 2etb_A 161 QPASLE--ATDSLGNTVLH-ALVMIADNSPENSALVIHMYDGLLQMGARLCPTV------------------------QL 213 (256)
T ss_dssp CCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC------------------------CG
T ss_pred cCCCcC--ccCCCCCCHHH-HHHHcccCCchhhHHHHHHHHHHHHcCCCccccc------------------------cc
Confidence 666666 66666666666 5655 55555 6666666665432110 01
Q ss_pred CCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920 201 IDEPKFHQPDPSLTIYDQATKIRYKFASANEG 232 (497)
Q Consensus 201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 232 (497)
.+..+..|.|||++|+..++.+.+++|.+++.
T Consensus 214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 26778899999999999999999999986543
No 38
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=4.8e-28 Score=219.93 Aligned_cols=152 Identities=24% Similarity=0.201 Sum_probs=143.4
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNN-RLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 46789999999999999999999999999999999999999999999985 59999999999999988765
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++
T Consensus 109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~v~~ 185 (192)
T 2rfm_A 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEA-SARIFGRQEVIKI 185 (192)
T ss_dssp HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCcHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999 89999999999 9999999999999
Q ss_pred hhhCC
Q 010920 163 VIPCG 167 (497)
Q Consensus 163 Ll~~g 167 (497)
|+++|
T Consensus 186 Ll~~~ 190 (192)
T 2rfm_A 186 FTEVR 190 (192)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99765
No 39
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=2.2e-27 Score=211.02 Aligned_cols=150 Identities=23% Similarity=0.317 Sum_probs=140.5
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
...+.|+||+|++.|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+. +.
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG-HLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 557889999999999999999999999999999999999999999985 59999999999999988765 88
Q ss_pred CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920 85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 164 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll 164 (497)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFD-ISIDNGNEDLAEILQ 166 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999998 89999999999 999999999999999
Q ss_pred hCC
Q 010920 165 PCG 167 (497)
Q Consensus 165 ~~g 167 (497)
+.|
T Consensus 167 ~~G 169 (169)
T 2y1l_E 167 KLN 169 (169)
T ss_dssp TC-
T ss_pred HcC
Confidence 876
No 40
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1e-27 Score=211.27 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=139.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG 86 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g 86 (497)
...||||+|++.|+.+++++|+++|++++.+|..|.||||+|+. |+ .+++++|+++|++++..+. +..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GN-PEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-Cc-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 67899999999999999999999999999999999999999998 55 9999999999999998765 7889
Q ss_pred CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCc-ccccccccCCCCHHHHHhhhcCCHHHHHHhhh
Q 010920 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY-FCGWLREFYGPSFLEALAPQLMSRKIWVVVIP 165 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~-i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~ 165 (497)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++ ..+..|.|||| +|+..++.+++++|++
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSLMQA 158 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 57 79999999999 9999999999999999
Q ss_pred CCCC
Q 010920 166 CGTA 169 (497)
Q Consensus 166 ~ga~ 169 (497)
+|++
T Consensus 159 ~GAd 162 (162)
T 1ihb_A 159 NGAG 162 (162)
T ss_dssp TC--
T ss_pred hCCC
Confidence 9985
No 41
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.95 E-value=2.4e-28 Score=244.75 Aligned_cols=212 Identities=15% Similarity=0.054 Sum_probs=181.4
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHc----CCCCCC-------
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA------- 79 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~----ga~~~~------- 79 (497)
..++..|.||||+|+..|+.++|++|+++|++++. ..|.||||+|+.. ++.+++++|+++ |++++.
T Consensus 47 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 123 (364)
T 3ljn_A 47 TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLLNECDE 123 (364)
T ss_dssp TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT-TCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc-CCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence 34567999999999999999999999999997643 4799999999998 559999999999 777765
Q ss_pred ----------cCc---------ccCC--CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCc-----
Q 010920 80 ----------YRP---------AKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY----- 133 (497)
Q Consensus 80 ----------~~~---------~~~g--~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~----- 133 (497)
.+. +..| +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 203 (364)
T 3ljn_A 124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR 203 (364)
T ss_dssp CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCC
T ss_pred HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence 222 7788 99999999999999999999999999999999999999999999998
Q ss_pred ccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH--hhcC-----------
Q 010920 134 FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL--WKAK----------- 200 (497)
Q Consensus 134 i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~----------- 200 (497)
++ ..|..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+...++...+..| .++.
T Consensus 204 ~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 280 (364)
T 3ljn_A 204 LD--YANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG 280 (364)
T ss_dssp TT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSS
T ss_pred cc--ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCc
Confidence 88 89999999999 99999999999999999999999988899999999988887666555 3222
Q ss_pred -CCCCCCCCCChHHHHHHhCChhHHHHHH
Q 010920 201 -IDEPKFHQPDPSLTIYDQATKIRYKFAS 228 (497)
Q Consensus 201 -~~~~~~~g~~pl~~a~~~~~~~~~~~l~ 228 (497)
....+..+.+|++.|+..++...+..+.
T Consensus 281 ~~~~~~~~~~~~l~~aa~~~~~~~v~~ll 309 (364)
T 3ljn_A 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLL 309 (364)
T ss_dssp SSBCGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred ccccccccccccchhhhhccCHHHHHHHH
Confidence 2235667788888777776655554443
No 42
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.4e-27 Score=211.61 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=142.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG 86 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g 86 (497)
.|.||||+|++.|+.+++++|++.|++++.+|..|.||||+|+..| +.+++++|+++|++++..+. +..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG-QIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCC-CHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 5899999999999999999999999999999999999999999985 59999999999999988765 7889
Q ss_pred CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMD-LAVALGYRSVQQVIESH 157 (167)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 89999999999 99999999999999988
Q ss_pred CCCC
Q 010920 167 GTAN 170 (497)
Q Consensus 167 ga~~ 170 (497)
+.+.
T Consensus 158 ~~~~ 161 (167)
T 3v31_A 158 LLKL 161 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7553
No 43
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=7.7e-28 Score=231.14 Aligned_cols=194 Identities=13% Similarity=0.134 Sum_probs=127.8
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHH----cCCCcc----ccCCCCChHHHHHHHh--CCcHHHHHHHHHcCCCCCC--
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRS----QGASLE----WMDKEGKTPLIVACMD--SGLINVAKTLIELGANINA-- 79 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~----~ga~~n----~~d~~G~TpLh~Aa~~--g~~~~~v~~Ll~~ga~~~~-- 79 (497)
..+..|.||||+|++.|+.++|+.|++ .+++++ ..|..|.||||+|+.. .++.+++++|+++|++++.
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 457799999999999999999998887 566665 4588999999999985 2459999999999876432
Q ss_pred ---------cC--c-------ccCCCHHHHHHHHhCCCCCcccCC--------------CCCCHHHHHHHcCCHHHHHHH
Q 010920 80 ---------YR--P-------AKRGLEPTVRLLLSCGANALVRND--------------DCHTALGVARIKGHINVVRAI 127 (497)
Q Consensus 80 ---------~~--~-------~~~g~~~~v~~Ll~~ga~~~~~~~--------------~g~T~Lh~A~~~g~~~~v~~L 127 (497)
.+ . +..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 167 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 10 0 445555555555555555555544 455555555555555555555
Q ss_pred HH---CCCcccccccccCCCCHHHHHhhhcCC---------HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHH
Q 010920 128 ES---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIA 195 (497)
Q Consensus 128 l~---~g~~i~~~~~~~~G~T~Lh~~A~~~~~---------~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~ 195 (497)
++ +|++++ .+|..|.|||| +|+..++ .+++++|+++|++.+...
T Consensus 168 l~~~~~gad~~--~~d~~g~tpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~--------------------- 223 (273)
T 2pnn_A 168 LQNSWQPADIS--ARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL--------------------- 223 (273)
T ss_dssp HHCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------------
T ss_pred HhcccCCCCce--eeCCCCCcHHH-HHHHccCcchhHHHHHHHHHHHHHHhhhhccccc---------------------
Confidence 55 555555 45555555555 4554444 455555555544432111
Q ss_pred HhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920 196 LWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEG 232 (497)
Q Consensus 196 l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 232 (497)
..++..+..|.|||++|+..++.+.+++|...+.
T Consensus 224 ---~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 224 ---KLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp ---CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ---ccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 0023578899999999999999999999987665
No 44
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=2.1e-27 Score=211.56 Aligned_cols=155 Identities=23% Similarity=0.193 Sum_probs=142.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG 86 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~-~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g 86 (497)
+.||||+|+..|+.++++.|++.|.+ ++.+|..|.||||+|+..| +.+++++|+++|++++..+. +..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG-EIETVRFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTT-CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence 57899999999999999999999976 8999999999999999985 59999999999999998765 8889
Q ss_pred CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMD-LAVALGYRKVQQVIENH 157 (172)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHhCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 89999999999 99999999999999999
Q ss_pred CCCCCCCCc
Q 010920 167 GTANPSKPL 175 (497)
Q Consensus 167 ga~~~~~~~ 175 (497)
|++....+.
T Consensus 158 ~~~~~~~~~ 166 (172)
T 3v30_A 158 ILKLFQSNL 166 (172)
T ss_dssp HHHHSCC--
T ss_pred HHHHhcccC
Confidence 987654443
No 45
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.95 E-value=2.1e-27 Score=238.81 Aligned_cols=183 Identities=15% Similarity=0.072 Sum_probs=166.2
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcC---CCCCCcCc-----
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAYRP----- 82 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~g---a~~~~~~~----- 82 (497)
+.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|++++ ++++..+.
T Consensus 160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~d~~g~t~ 238 (373)
T 2fo1_E 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR-DFGMMVYMLNSTKLKGDIEELDRNGMTA 238 (373)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT-CHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCC-CHHHHHHHHhcCccccChhhcCCCCCCH
Confidence 345679999999999999999999999999999999999999999999985 599999999987 78877665
Q ss_pred ----ccCC---CHHHHHHHHhCCCCCcc--------cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CcccccccccCCCCH
Q 010920 83 ----AKRG---LEPTVRLLLSCGANALV--------RNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSF 146 (497)
Q Consensus 83 ----~~~g---~~~~v~~Ll~~ga~~~~--------~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~~G~T~ 146 (497)
+..+ +.+++++|+++|++++. .|..|.||||+|+..|+.++|++|++++ ++++ .+|..|.||
T Consensus 239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n--~~d~~g~Tp 316 (373)
T 2fo1_E 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTP 316 (373)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCH
T ss_pred HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc--CcCCCCCCH
Confidence 5555 89999999999999886 5779999999999999999999999876 9999 899999999
Q ss_pred HHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHh
Q 010920 147 LEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 197 (497)
Q Consensus 147 Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 197 (497)
|| +|+..|+.+++++|+++|++.+..+..+.++++.+...++...+..|.
T Consensus 317 L~-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll 366 (373)
T 2fo1_E 317 IM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366 (373)
T ss_dssp HH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred HH-HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99 999999999999999999999998888999999999888877766553
No 46
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=9.6e-27 Score=226.18 Aligned_cols=172 Identities=20% Similarity=0.185 Sum_probs=154.2
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 146 (299)
T 1s70_B 68 YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG-YLDIAEYLISQGAHVGAVNSEGDTPLDIA 146 (299)
T ss_dssp CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence 35669999999999999999999999999999999999999999999995 59999999999999988765
Q ss_pred ccCCCHHHHHHHHh-CCCCCc--------------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920 83 AKRGLEPTVRLLLS-CGANAL--------------------------VRNDDCHTALGVARIKGHINVVRAIESHICYFC 135 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~-~ga~~~--------------------------~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~ 135 (497)
+..++.++++.|+. .+.+++ ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~ 226 (299)
T 1s70_B 147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226 (299)
T ss_dssp CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence 66677888876654 344432 356789999999999999999999999999999
Q ss_pred ccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcC
Q 010920 136 GWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD 187 (497)
Q Consensus 136 ~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~ 187 (497)
.+|..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+.+.
T Consensus 227 --~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 227 --IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp --CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred --CcCCCCCcHHH-HHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence 89999999999 99999999999999999999999888899999999754
No 47
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=1e-26 Score=212.36 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=142.8
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHH-HcCCCCCCcCc-------
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRP------- 82 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll-~~ga~~~~~~~------- 82 (497)
..++..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+ ..+++++..+.
T Consensus 33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~L~ 111 (201)
T 3hra_A 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG-RTEILAYMLKHATPDLNKHNRYGGNALI 111 (201)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSCCCTTCCCTTSCCSHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhccCcccccccCCCCcHHH
Confidence 345679999999999999999999999999999999999999999999985 599999999 55778887665
Q ss_pred --ccCCCHHHHHHHHhCC-CCCcccCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920 83 --AKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGH-----INVVRAIESHICYFCGWLREFYGPSFLEALAPQL 154 (497)
Q Consensus 83 --~~~g~~~~v~~Ll~~g-a~~~~~~~~g~T~Lh~A~~~g~-----~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~ 154 (497)
+..|+.+++++|+++| ++++.+|..|.||||+|+..++ .+++++|+++|++++ .+|..|.|||| +|+..
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~ 188 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRTAMD-YANQK 188 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHc
Confidence 8899999999999999 9999999999999999999998 999999999999999 89999999999 99999
Q ss_pred CCHHHHHHhhhCC
Q 010920 155 MSRKIWVVVIPCG 167 (497)
Q Consensus 155 ~~~~iv~~Ll~~g 167 (497)
++.+++++|+++|
T Consensus 189 ~~~~~~~~Ll~~G 201 (201)
T 3hra_A 189 GYTEISKILAQYN 201 (201)
T ss_dssp TCHHHHHHHHTCC
T ss_pred CCHhHHHHHHhcC
Confidence 9999999999886
No 48
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.95 E-value=2.6e-27 Score=222.34 Aligned_cols=157 Identities=22% Similarity=0.148 Sum_probs=144.9
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCC------CcCc--
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN------AYRP-- 82 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~------~~~~-- 82 (497)
..++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|++++++++ ..+.
T Consensus 39 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~~g 117 (236)
T 1ikn_D 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG-CLASVGVLTQSCTTPHLHSILKATNYNG 117 (236)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHT-CHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHhcccchhHHHHhhccCCCC
Confidence 345678999999999999999999999999999999999999999999995 5999999999997642 2222
Q ss_pred -------ccCCCHHHHHHHHhCCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920 83 -------AKRGLEPTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 154 (497)
Q Consensus 83 -------~~~g~~~~v~~Ll~~ga~~~~~~~-~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~ 154 (497)
+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..
T Consensus 118 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~ 194 (236)
T 1ikn_D 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-LTWGR 194 (236)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-GCTTS
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH-HHHcc
Confidence 788999999999999999999997 99999999999999999999999999999 89999999999 99999
Q ss_pred CCHHHHHHhhhCCCCCC
Q 010920 155 MSRKIWVVVIPCGTANP 171 (497)
Q Consensus 155 ~~~~iv~~Ll~~ga~~~ 171 (497)
++.+++++|+++|++..
T Consensus 195 ~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 195 PSTRIQQQLGQLTLENL 211 (236)
T ss_dssp SCHHHHHHHHTTSCGGG
T ss_pred CchHHHHHHHHcchhhh
Confidence 99999999999999754
No 49
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.94 E-value=6.8e-27 Score=218.65 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=143.3
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCc-----cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcC----
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASL-----EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR---- 81 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~-----n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~---- 81 (497)
..++..|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..| +.+++++|+++|++++..+
T Consensus 31 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~~~ 109 (232)
T 2rfa_A 31 HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ-NVNLVRALLARGASVSARATGSV 109 (232)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCCSGG
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC-CHHHHHHHHhCCCCCCcccCCcc
Confidence 345679999999999999999999999999887 677889999999999985 5999999999999988753
Q ss_pred -----------c-------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHH----HHHHHCCCcc-----
Q 010920 82 -----------P-------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV----RAIESHICYF----- 134 (497)
Q Consensus 82 -----------~-------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v----~~Ll~~g~~i----- 134 (497)
. +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++ ++|+++|++.
T Consensus 110 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~ 189 (232)
T 2rfa_A 110 FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189 (232)
T ss_dssp GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCG
T ss_pred eeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhh
Confidence 2 778999999999999999999999999999999999999988 9999999987
Q ss_pred -cccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCC
Q 010920 135 -CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPS 172 (497)
Q Consensus 135 -~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~ 172 (497)
+ .+|..|.|||| +|+..|+.+++++|+++|.....
T Consensus 190 ~~--~~~~~g~tpl~-~A~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 190 EL--VPNNQGLTPFK-LAGVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp GG--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHHC--
T ss_pred hc--cCCCCCCCHHH-HHHHcCCHHHHHHHHhcCccchh
Confidence 4 68999999999 99999999999999999876543
No 50
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.94 E-value=4.8e-26 Score=211.43 Aligned_cols=155 Identities=21% Similarity=0.181 Sum_probs=147.0
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------- 82 (497)
.++..|.||||+|+..|+.+++++|+++++ +++.++..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 131 (223)
T 2f8y_A 53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA-VEGMLEDLINSHADVNAVDDLGKSALHW 131 (223)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT-CHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC-cHHHHHHHHHcCCCCcCcCCCCCcHHHH
Confidence 356799999999999999999999999997 89999999999999999995 49999999999999998775
Q ss_pred -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 010920 83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 161 (497)
Q Consensus 83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~ 161 (497)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.++++
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~ 208 (223)
T 2f8y_A 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRD-IAQERMHHDIVR 208 (223)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHH-HHHHhcchHHHH
Confidence 78899999999999999999999999999999999999999999999999999 89999999999 999999999999
Q ss_pred HhhhCCCCC
Q 010920 162 VVIPCGTAN 170 (497)
Q Consensus 162 ~Ll~~ga~~ 170 (497)
+|+++|+..
T Consensus 209 ~L~~~g~~~ 217 (223)
T 2f8y_A 209 LLDEYNLVR 217 (223)
T ss_dssp HHHHTTCSS
T ss_pred HHHHcCCCc
Confidence 999999865
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=1.8e-26 Score=219.76 Aligned_cols=190 Identities=14% Similarity=0.109 Sum_probs=134.3
Q ss_pred cCCCchHHHHHHHcCCHHHHH----HHHHcCCCccccC----CCCChHHHHHH---HhCCcHHHHHHHHHcCCCCCC---
Q 010920 14 RQSKDELLYQWVIAGDVDAIR----ALRSQGASLEWMD----KEGKTPLIVAC---MDSGLINVAKTLIELGANINA--- 79 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~----~Ll~~ga~~n~~d----~~G~TpLh~Aa---~~g~~~~~v~~Ll~~ga~~~~--- 79 (497)
+.-|+|+||.|++.|+.+.|+ +|++.|++++..+ ..|.||||+|+ .. ++.+++++|+++|++++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchHh
Confidence 457899999999999999554 4455999998776 67999999999 44 569999999998865432
Q ss_pred --------cCc---------ccCCCHHHHHHHHhCCCCCcccC--------------CCCCCHHHHHHHcCCHHHHHHHH
Q 010920 80 --------YRP---------AKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIE 128 (497)
Q Consensus 80 --------~~~---------~~~g~~~~v~~Ll~~ga~~~~~~--------------~~g~T~Lh~A~~~g~~~~v~~Ll 128 (497)
.+. +..|+.++|++|+++|++++.++ ..|.||||+|+..|+.+++++|+
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 111 55666666666666666666665 45666666666666666666666
Q ss_pred H---CCCcccccccccCCCCHHHHHhhhcCC---------HHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920 129 S---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL 196 (497)
Q Consensus 129 ~---~g~~i~~~~~~~~G~T~Lh~~A~~~~~---------~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l 196 (497)
+ +|++++ .+|..|.|||| +|+..++ .+++++|+++|++.+...
T Consensus 161 ~~~~~ga~~~--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~---------------------- 215 (260)
T 3jxi_A 161 ENGHKQADLR--RQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT---------------------- 215 (260)
T ss_dssp HCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC----------------------
T ss_pred hccccCCCCc--ccCCCCCcHHH-HHHHhccCchhHHHHHHHHHHHHHHhCccccccc----------------------
Confidence 6 666666 56666666666 5555444 466666666655442111
Q ss_pred hhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhCC
Q 010920 197 WKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE 231 (497)
Q Consensus 197 ~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~ 231 (497)
...+..+..|.||||+|+..++.+.+++|.+++
T Consensus 216 --~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 216 --NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp --CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred --chhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 112567889999999999999999999998654
No 52
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.8e-28 Score=225.94 Aligned_cols=184 Identities=11% Similarity=-0.009 Sum_probs=154.2
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR 92 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~ 92 (497)
.+.+|.||||+|+..|+.++|++|++.|+++|.+|..|.||||+|+..|+ .+++++|+
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll--------------------- 74 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGAN-YSIVDFLI--------------------- 74 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTC-HHHHHHHH---------------------
T ss_pred cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHH---------------------
Confidence 46689999999999999999999999999999999999999999999844 55555555
Q ss_pred HHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc-cCCCCHHHHHh--hhcCCHHHHHHhhhCCCC
Q 010920 93 LLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 93 ~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~~G~T~Lh~~A--~~~~~~~iv~~Ll~~ga~ 169 (497)
++|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..+ ..|.|||| +| +..++.+++++|+++|++
T Consensus 75 ---~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~-~A~a~~~~~~~~v~~Ll~~ga~ 148 (229)
T 2vge_A 75 ---TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATAFE-KCDPYREGYADCATYLADVEQS 148 (229)
T ss_dssp ---HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCSSTTCCTGG-GCCTTSTTHHHHHHHHHHHHHH
T ss_pred ---HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHhcChHHHHHHHHHcCCC
Confidence 5556666788999999999999999999999999999998 665 69999999 88 999999999999999999
Q ss_pred CCCCCcccccccccCCcCcCHHHHHHHhhcC--CCCCCCCCCChHHHHHHhCChhHHH
Q 010920 170 NPSKPLRFELVIYPSLQDVQPRAVIALWKAK--IDEPKFHQPDPSLTIYDQATKIRYK 225 (497)
Q Consensus 170 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~g~~pl~~a~~~~~~~~~~ 225 (497)
.+..+..+.++++........ .++...+++ ++..+..|.|||++|+..++...++
T Consensus 149 ~~~~~~~~~~~l~~~~~~~~~-~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 149 MGLMNSGAVYALWDYSAEFGD-ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp TTTSGGGEEEESSCBCCSSTT-BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred cccccCCchHHHHHHhhcccc-ccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence 888887777777765544332 233335565 6778999999999998888765443
No 53
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=2.7e-26 Score=205.89 Aligned_cols=157 Identities=21% Similarity=0.210 Sum_probs=140.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 15 QSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
..+.++||.|++.|+.++|++|++. +.+++.+|..|.||||+|+..| +.+++++|+++|++++..+. +.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG-RSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcC-cHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 4688999999999999999999998 5789999999999999999985 49999999999999988765 78
Q ss_pred CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 010920 85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 164 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll 164 (497)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVD-KAKAPLRELLRERAE 158 (179)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGG-GSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHH-HHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999998 89999999999 899999999999999
Q ss_pred hCCCCCCCCCc
Q 010920 165 PCGTANPSKPL 175 (497)
Q Consensus 165 ~~ga~~~~~~~ 175 (497)
++|++.+..+.
T Consensus 159 ~~g~~~~~~~~ 169 (179)
T 3f6q_A 159 KMGQNLNRIPY 169 (179)
T ss_dssp HTTCCCSCBCC
T ss_pred HhhcCcccCCc
Confidence 99998876553
No 54
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=1.9e-26 Score=203.98 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=123.1
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
.+..|.|+||.|++.|+.++++.|++. +.+++..+..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN-RVSVVEYLLQHGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcC-hHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 367899999999999999999999985 4688888999999999999984 49999999998888877665
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 162 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~ 162 (497)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|.. ++.+++++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~a~~-~~~~i~~~ 158 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLD-LVKD-GDTDIQDL 158 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGG-GSCT-TCHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhH-hHhc-CChHHHHH
Confidence 66778888888888888888888888888888888888888888888888877 77888888888 6555 77788888
Q ss_pred hhhCCC
Q 010920 163 VIPCGT 168 (497)
Q Consensus 163 Ll~~ga 168 (497)
|+++|+
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 877764
No 55
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=4.5e-26 Score=199.02 Aligned_cols=142 Identities=21% Similarity=0.221 Sum_probs=127.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCC
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGL 87 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~ 87 (497)
+.|+||.|++.|+.++|++|++.|++++ .+..|.||||+|+..|+ .+++++|+++|++++..+. +..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGH-FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTC-HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 4689999999999999999999999887 58899999999999954 9999999999999887765 77788
Q ss_pred HHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920 88 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 88 ~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L 163 (497)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHh
Confidence 999999999999998889999999999999999999999999999888 78889999999 88899999998876
No 56
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.94 E-value=1.4e-26 Score=224.08 Aligned_cols=188 Identities=12% Similarity=0.026 Sum_probs=157.4
Q ss_pred hhchhhhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc----
Q 010920 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---- 82 (497)
Q Consensus 7 ~~~~~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---- 82 (497)
+.+......+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..+.
T Consensus 52 ~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~~~~~g~~ 130 (285)
T 3kea_A 52 NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG-NMQTVKLFVKKNWRLMFYGKTGWK 130 (285)
T ss_dssp HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHCGGGGGCSSSGGG
T ss_pred hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCccCCCCCC
Confidence 3343333446999999999999999999999999999999999999999999985 59999999999999887653
Q ss_pred ------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCH-HHHHhhhcC
Q 010920 83 ------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQLM 155 (497)
Q Consensus 83 ------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~-Lh~~A~~~~ 155 (497)
+..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|| || +|+..+
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~-~A~~~~ 206 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNK 206 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHH-HHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHH-HHHHcC
Confidence 7889999999999999886322 289999999999999999999999999999 899999998 99 999999
Q ss_pred CHHHHHHhhhCCCCCCCCCcccccccccCCcCcCH--HHHHHHhhcCCCCCCC
Q 010920 156 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP--RAVIALWKAKIDEPKF 206 (497)
Q Consensus 156 ~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~--~~~~~l~~~~~~~~~~ 206 (497)
+.+++++|+++|++.+..+. . +...++. ..++...+.++.....
T Consensus 207 ~~~~v~~Ll~~gad~~~~~~-~------a~~~~~~~iv~~Ll~~g~~~~~~~~ 252 (285)
T 3kea_A 207 DIEMLQALFKYDINIYSANL-E------NVLLDDAEIAKMIIEKHVEYKSDSY 252 (285)
T ss_dssp CHHHHHHHTTSCBCSTTTTG-G------GGTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHcCCCCCCCCh-h------hhhcCCHHHHHHHHHcCCCCCCccc
Confidence 99999999999999877762 1 1223333 3344446666655444
No 57
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.94 E-value=1.1e-26 Score=220.88 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=141.5
Q ss_pred hcCCCchHHHHHHHc---CCHHHHHHHHHcCCCccc-----------cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCC
Q 010920 13 QRQSKDELLYQWVIA---GDVDAIRALRSQGASLEW-----------MDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~ga~~n~-----------~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~ 78 (497)
++..|.||||+|+.. |+.++|++|+++|++++. +|..|.||||+|+..| +.+++++|+++|++++
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~ 117 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR-SLQCVKLLVENGADVH 117 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTT-CHHHHHHHHHTTCCTT
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcC-CHHHHHHHHHcCCCCC
Confidence 577999999999999 999999999999987763 3477999999999985 5999999999999998
Q ss_pred CcC---------------c-------ccCCCHHHHHHHHh---CCCCCcccCCCCCCHHHHHHH--cCCHH-------HH
Q 010920 79 AYR---------------P-------AKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARI--KGHIN-------VV 124 (497)
Q Consensus 79 ~~~---------------~-------~~~g~~~~v~~Ll~---~ga~~~~~~~~g~T~Lh~A~~--~g~~~-------~v 124 (497)
..+ + +..|+.+++++|++ +|++++.+|..|+||||+|+. .++.+ ++
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv 197 (256)
T 2etb_A 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMY 197 (256)
T ss_dssp CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHH
Confidence 764 3 78899999999999 999999999999999999999 88888 99
Q ss_pred HHHHHCCCcc-------cccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCC
Q 010920 125 RAIESHICYF-------CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN 170 (497)
Q Consensus 125 ~~Ll~~g~~i-------~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~ 170 (497)
++|+++|+++ + .+|..|.|||| +|+..|+.+++++|+++|.+.
T Consensus 198 ~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 198 DGLLQMGARLCPTVQLEE--ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHHSTTCCGGG--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccccccccc--ccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCC
Confidence 9999999999 7 89999999999 999999999999999998653
No 58
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.93 E-value=2.3e-25 Score=197.84 Aligned_cols=149 Identities=24% Similarity=0.247 Sum_probs=132.9
Q ss_pred hHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH
Q 010920 52 TPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122 (497)
Q Consensus 52 TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~ 122 (497)
++|+.||.+|+ .++|++||++|+++|.++. +..++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~-~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGN-KDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 57999999965 9999999999999999876 8889999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCC
Q 010920 123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKID 202 (497)
Q Consensus 123 ~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 202 (497)
+|++|+++|++++ .+|.+|+|||| +|+..|+.+++++|+++|++.+
T Consensus 85 ~v~~Ll~~gadvn--~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~gad~~------------------------------- 130 (169)
T 4gpm_A 85 VVKLLISKGADVN--AKDSDGRTPLH-HAAENGHKEVVKLLISKGADVN------------------------------- 130 (169)
T ss_dssp HHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTT-------------------------------
T ss_pred HHHHHHHCcCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCcc-------------------------------
Confidence 9999999999999 89999999999 9999999999999999886653
Q ss_pred CCCCCCCChHHHHHHhCChhHHHHHHhCCCCHH
Q 010920 203 EPKFHQPDPSLTIYDQATKIRYKFASANEGDKH 235 (497)
Q Consensus 203 ~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~ 235 (497)
..+..|.|||++|+..++.+.+++|.+.+.+.+
T Consensus 131 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 131 TSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 345679999999999999999999998877654
No 59
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.7e-26 Score=197.62 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=117.0
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV 91 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v 91 (497)
.++..|.||||+|++.|+.+++++|+++|++++.+|..|.||||+|+. |+ .+++++|+++|
T Consensus 7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~-~~~v~~Ll~~g----------------- 67 (136)
T 1d9s_A 7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GS-AQVAELLLLHG----------------- 67 (136)
T ss_dssp CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SC-HHHHHHHHHHT-----------------
T ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CC-HHHHHHHHHCC-----------------
Confidence 356699999999999999999999999999999999999999999999 65 66666666554
Q ss_pred HHHHhCCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920 92 RLLLSCGANALVRNDD-CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 92 ~~Ll~~ga~~~~~~~~-g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~ 169 (497)
++++.+|.. |.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++
T Consensus 68 -------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 68 -------AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVD-LAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp -------CCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHH-HHHHHTCHHHHHHHHHHHCC
T ss_pred -------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence 555667888 9999999999999999999999999999 89999999999 99999999999999999875
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=5.1e-26 Score=219.00 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=139.4
Q ss_pred hhhcCCCchHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCChHHHHHH-----HhCCcHHHHHHHHHcCCCCCCcCc--
Q 010920 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVAC-----MDSGLINVAKTLIELGANINAYRP-- 82 (497)
Q Consensus 11 ~~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~G~TpLh~Aa-----~~g~~~~~v~~Ll~~ga~~~~~~~-- 82 (497)
+.+|..|.||||+|+..|+.++|++|++.|+ +++..|..|.||||+|+ .. ++.+++++|++.|++++..+.
T Consensus 105 n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~~~~g 183 (276)
T 4hbd_A 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKASQAG 183 (276)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCCTTTC
T ss_pred cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCccccCCCC
Confidence 4467799999999999999999999999998 99999999999999999 44 458999999999988777554
Q ss_pred -------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCcccccccccCCCCHHHHHhhhc
Q 010920 83 -------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALAPQL 154 (497)
Q Consensus 83 -------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~A~~~ 154 (497)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++ .+|..|.|||| +|+..
T Consensus 184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~-~A~~~ 260 (276)
T 4hbd_A 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALM-VALDA 260 (276)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHH-HHHHc
Confidence 78899999999999999999999999999999999999999999999 899998 89999999999 89999
Q ss_pred CCHHHHHHhhhCC
Q 010920 155 MSRKIWVVVIPCG 167 (497)
Q Consensus 155 ~~~~iv~~Ll~~g 167 (497)
|+.+++++|++++
T Consensus 261 g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 261 GQSEIASMLYSRM 273 (276)
T ss_dssp TCHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcc
Confidence 9999999999875
No 61
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.93 E-value=2e-26 Score=221.27 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=140.3
Q ss_pred hcCCCchHHHHHHHc---CCHHHHHHHHHcCCCc-------cc----cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCC
Q 010920 13 QRQSKDELLYQWVIA---GDVDAIRALRSQGASL-------EW----MDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~ga~~-------n~----~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~ 78 (497)
++..|.||||+|+.. |+.++|++|+++|+++ +. +|..|.||||+|+..| +.+++++|+++|++++
T Consensus 50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-NMTLVTLLVENGADVQ 128 (273)
T ss_dssp CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTT-CHHHHHHHHHTTCCTT
T ss_pred cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcC-CHHHHHHHHHCCCCcC
Confidence 367999999999987 9999999999998652 33 5678999999999985 5999999999999998
Q ss_pred CcC----------------c-------ccCCCHHHHHHHHh---CCCCCcccCCCCCCHHHHHHHcCC---------HHH
Q 010920 79 AYR----------------P-------AKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------INV 123 (497)
Q Consensus 79 ~~~----------------~-------~~~g~~~~v~~Ll~---~ga~~~~~~~~g~T~Lh~A~~~g~---------~~~ 123 (497)
..+ . +..|+.+++++|++ +|++++.+|..|+||||+|+..|+ .++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 208 (273)
T 2pnn_A 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208 (273)
T ss_dssp CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence 865 2 78899999999999 999999999999999999999998 899
Q ss_pred HHHHHHCCCcccc-----cccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920 124 VRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 124 v~~Ll~~g~~i~~-----~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~ 169 (497)
+++|+++|++++. ..+|..|.|||| +|+..|+.+++++|+++|+.
T Consensus 209 v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 209 YNEILILGAKLHPTLKLEEITNRKGLTPLA-LAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHhhhhcccccccccccCCCCCCHHH-HHHHhChHHHHHHHHHCCCC
Confidence 9999999999962 148999999999 99999999999999999994
No 62
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=209.67 Aligned_cols=181 Identities=18% Similarity=0.169 Sum_probs=164.4
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRP-------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~-------- 82 (497)
.++..|.||||+|++.|+.++|++|+++|++++..+. .|.||||+|+..|+ .+++++|+++|++++..+.
T Consensus 37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 115 (240)
T 3eu9_A 37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH-LSMVVQLMKYGADPSLIDGEGCSCIHL 115 (240)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC-HHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 3567899999999999999999999999998876554 49999999999954 9999999999999988765
Q ss_pred -ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC-HHHHHHHHHCCCccccccccc-CCCCHHHHHhhhcCCHHH
Q 010920 83 -AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKI 159 (497)
Q Consensus 83 -~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~-~~~v~~Ll~~g~~i~~~~~~~-~G~T~Lh~~A~~~~~~~i 159 (497)
+..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++|++.|++++ ..+. .|.|||| +|+..++.++
T Consensus 116 A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~--~~~~~~g~t~L~-~A~~~~~~~~ 192 (240)
T 3eu9_A 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALH-WAVLAGNTTV 192 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT--CCCTTTCCCHHH-HHHHHTCHHH
T ss_pred HHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc--hhhccCCCcHHH-HHHHcCCHHH
Confidence 78899999999999999999999999999999997776 899999999999998 6776 8999999 9999999999
Q ss_pred HHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHH
Q 010920 160 WVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL 196 (497)
Q Consensus 160 v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l 196 (497)
+++|+++|++.+..+..+.++++.+.+.++...+..+
T Consensus 193 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 193 ISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229 (240)
T ss_dssp HHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 9999999999998888899999999988887766655
No 63
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.93 E-value=3.2e-26 Score=217.98 Aligned_cols=156 Identities=19% Similarity=0.099 Sum_probs=139.8
Q ss_pred cCCCchHHHHHH---HcCCHHHHHHHHHcCCC-----------ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCC
Q 010920 14 RQSKDELLYQWV---IAGDVDAIRALRSQGAS-----------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79 (497)
Q Consensus 14 ~~~G~T~Lh~Aa---~~g~~~~v~~Ll~~ga~-----------~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~ 79 (497)
+..|.||||+|+ +.|+.++|++|++.|++ ++..|..|.||||+|+..| +.++|++|+++|++++.
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~ga~~~~ 121 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR-CKHYVELLVEKGADVHA 121 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTT-CHHHHHHHHHTTCCTTC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcC-CHHHHHHHHhCCCCcCc
Confidence 367999999999 77999999999998754 4555668999999999984 59999999999999998
Q ss_pred cC----------------c-------ccCCCHHHHHHHHh---CCCCCcccCCCCCCHHHHHHHcCC---------HHHH
Q 010920 80 YR----------------P-------AKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------INVV 124 (497)
Q Consensus 80 ~~----------------~-------~~~g~~~~v~~Ll~---~ga~~~~~~~~g~T~Lh~A~~~g~---------~~~v 124 (497)
.+ + +..|+.+++++|++ +|++++.+|..|+||||+|+..++ .+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v 201 (260)
T 3jxi_A 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201 (260)
T ss_dssp CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence 86 2 88999999999999 999999999999999999999888 7999
Q ss_pred HHHHHCCCcccc-----cccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCC
Q 010920 125 RAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANP 171 (497)
Q Consensus 125 ~~Ll~~g~~i~~-----~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~ 171 (497)
++|+++|++++. ..+|..|.|||| +|+..|+.+++++|+++|.+..
T Consensus 202 ~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp HHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccccchhhcccCCCCCHHH-HHHHcCCHHHHHHHHHhCCCcc
Confidence 999999999831 179999999999 9999999999999999987643
No 64
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.6e-25 Score=194.58 Aligned_cols=144 Identities=26% Similarity=0.289 Sum_probs=133.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCC
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRG 86 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g 86 (497)
|.||||+|++.|+.+++++|++. +.+++.+|..|.||||+ +.. ++.+++++|+++|++++..+. +..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHc-CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 57999999999999999999998 35999999999999999 877 459999999999999988765 7889
Q ss_pred CHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhC
Q 010920 87 LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 166 (497)
Q Consensus 87 ~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ 166 (497)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ ++++ .+|..|.|||| +|+..++.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~-~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLE-LALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHH-HHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 8888 89999999999 99999999999999864
No 65
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=9e-26 Score=217.28 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=162.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC-CCCCcCc---------
Q 010920 15 QSKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRP--------- 82 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~--~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga-~~~~~~~--------- 82 (497)
..+.+++|.|+..|+.+.++.|++.+.+ +|.+|..|.||||+|+..|+ .+++++|++.|+ +++..+.
T Consensus 74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN-FPVVQQLLDSGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTC-HHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCC-HHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence 3467889999999999999999988766 89999999999999999855 999999999998 8888765
Q ss_pred c-----cCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCH
Q 010920 83 A-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 157 (497)
Q Consensus 83 ~-----~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~ 157 (497)
+ ..++.+++++|++.|++++..+..|.||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..|+.
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh-~A~~~g~~ 229 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALM-CACEHGHK 229 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHCCCH
Confidence 2 5688999999999999999999999999999999999999999999999999 89999999999 99999999
Q ss_pred HHHHHhhh-CCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 158 KIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 158 ~iv~~Ll~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
+++++|++ .|++. +..+..|.|||++|+..++.+.+++|...
T Consensus 230 ~iv~~Ll~~~gad~-------------------------------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 230 EIAGLLLAVPSCDI-------------------------------SLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHHHHHHTSTTCCT-------------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC-------------------------------cCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 99999998 66554 44556799999999999999999988754
No 66
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=4.1e-25 Score=188.96 Aligned_cols=126 Identities=19% Similarity=0.266 Sum_probs=113.2
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHH
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRL 93 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~ 93 (497)
...|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+..|+ .+++++|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll---------------------- 67 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH-LEIVEVLL---------------------- 67 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHH----------------------
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHH----------------------
Confidence 5678999999999999999999999999999999999999999999854 55555555
Q ss_pred HHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCC
Q 010920 94 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG 167 (497)
Q Consensus 94 Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~g 167 (497)
++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|
T Consensus 68 --~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 68 --KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFD-ISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp --HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHC-
T ss_pred --HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcC
Confidence 5556666788899999999999999999999999999999 89999999999 999999999999999876
No 67
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.1e-25 Score=197.24 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=112.8
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR 92 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~ 92 (497)
.+..|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+ .|+ .++ ++
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~-~~~------------------------v~ 61 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGS-ARV------------------------AE 61 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTC-HHH------------------------HH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCC-HHH------------------------HH
Confidence 4678999999999999999999999999999999999999999985 533 444 45
Q ss_pred HHHhCCCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCC
Q 010920 93 LLLSCGANALVRNDDCHT-ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANP 171 (497)
Q Consensus 93 ~Ll~~ga~~~~~~~~g~T-~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~ 171 (497)
+|+++|++++.+|..|.| |||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++..
T Consensus 62 ~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~ga~~~ 138 (156)
T 1bi7_B 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRAAAGGTR 138 (156)
T ss_dssp HHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSSCC----
T ss_pred HHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHhCHHHHHHHHHHcCCCCC
Confidence 555556666778899999 9999999999999999999999999 89999999999 9999999999999999999987
Q ss_pred CCCcccccccc
Q 010920 172 SKPLRFELVIY 182 (497)
Q Consensus 172 ~~~~~~~~~l~ 182 (497)
..+..+.++..
T Consensus 139 ~~~~~g~t~~~ 149 (156)
T 1bi7_B 139 GSNHARIDAAE 149 (156)
T ss_dssp -----------
T ss_pred ccCcCcCcccc
Confidence 66654554433
No 68
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.3e-24 Score=182.49 Aligned_cols=126 Identities=23% Similarity=0.326 Sum_probs=114.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL 95 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll 95 (497)
+|.||||+|++.|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll------------------------ 55 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH-LEVVKLLL------------------------ 55 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHH------------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCc-HHHHHHHH------------------------
Confidence 58999999999999999999999999999999999999999999854 55555555
Q ss_pred hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920 96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~ 169 (497)
++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++
T Consensus 56 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHTCC
T ss_pred HcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCC
Confidence 5555666788899999999999999999999999999999 89999999999 99999999999999999985
No 69
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=8.8e-26 Score=212.57 Aligned_cols=156 Identities=9% Similarity=-0.011 Sum_probs=105.4
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------cc
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AK 84 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~ 84 (497)
+.+|.||||.|++.|+.++++.|+++|++++.. ..|.||||+|+..|+ .+++++|++.|++++..+. +.
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGE-FDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTC-HHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCC-HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 458999999999999999999999999999864 688999999999955 9999999999999888765 77
Q ss_pred CCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCC-CHHHHHh--hhcCCHHHHH
Q 010920 85 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP-SFLEALA--PQLMSRKIWV 161 (497)
Q Consensus 85 ~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~-T~Lh~~A--~~~~~~~iv~ 161 (497)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|. |||| +| +..|+.++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~-~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQCSQ 156 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHH-HHHHhhhccHHHHH
Confidence 888999999999999999999999999999999999999999999999988 7777776 9999 77 7788899999
Q ss_pred HhhhCCCCCCCCC
Q 010920 162 VVIPCGTANPSKP 174 (497)
Q Consensus 162 ~Ll~~ga~~~~~~ 174 (497)
+|+.+|++.+..+
T Consensus 157 ~Ll~~~a~~~~~~ 169 (239)
T 1ycs_B 157 FLYGVQEKMGIMN 169 (239)
T ss_dssp HHHHHHHHTTTTG
T ss_pred HHHHhhhcccccc
Confidence 9998888776554
No 70
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.92 E-value=2.3e-25 Score=219.84 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=112.8
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCc---HHHHHHHHHcC-CCCCCcCc------
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL---INVAKTLIELG-ANINAYRP------ 82 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~---~~~v~~Ll~~g-a~~~~~~~------ 82 (497)
++..|.||||+|+..|+.++|++||++|++++.+|..|.||||+|+.. ++ .++++.|++++ ++++..+.
T Consensus 127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpL 205 (327)
T 1sw6_A 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205 (327)
T ss_dssp CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh-cccccHHHHHHHHHhhhccccCCCCCCCCHH
Confidence 466888888888888888888888888888888888888888888887 44 46777777765 55665544
Q ss_pred ---cc----CCCHHHHHHHHhC--------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920 83 ---AK----RGLEPTVRLLLSC--------------------GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 135 (497)
Q Consensus 83 ---~~----~g~~~~v~~Ll~~--------------------ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~ 135 (497)
+. .|+.+++++|++. |++++.++..|.||||+|+. +++|+++ +++
T Consensus 206 h~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n 277 (327)
T 1sw6_A 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLN 277 (327)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTT
T ss_pred HHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCC
Confidence 33 6778888877765 77777777888888887774 7777776 455
Q ss_pred ccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920 136 GWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL 185 (497)
Q Consensus 136 ~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~ 185 (497)
.+|..|+|||| +|+..|+.+++++|+++|++.+..+..+.++++.+.
T Consensus 278 --~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 278 --AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp --CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred --CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 67788888888 788888888888888888777666655555555554
No 71
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=1.6e-24 Score=185.39 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=111.7
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV 91 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v 91 (497)
.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll-------------------- 63 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH-LKVVELLL-------------------- 63 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC-HHHHHHHH--------------------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC-HHHHHHHH--------------------
Confidence 457899999999999999999999999999999999999999999999844 55555555
Q ss_pred HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCC
Q 010920 92 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGT 168 (497)
Q Consensus 92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga 168 (497)
++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..+..+++++|.+.+.
T Consensus 64 ----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 64 ----QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVD-YTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp ----HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GCCCHHHHHHHSCC-----
T ss_pred ----HcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhhccHHHHHhhcccccc
Confidence 5556666788899999999999999999999999999999 89999999999 9999999999988876653
No 72
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.90 E-value=1.8e-23 Score=189.53 Aligned_cols=154 Identities=19% Similarity=0.109 Sum_probs=135.7
Q ss_pred CccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHH
Q 010920 42 SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTAL 112 (497)
Q Consensus 42 ~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~L 112 (497)
.+|.+|..|.||||+|+..|+ .+++++|+++|++++..+. +..|+.+++++|+++|++++.+|..|.|||
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGM-ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTC-GGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HHhCcCCCCCCHHHHHHHcCC-HHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 456789999999999999955 9999999999999887765 788999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHH
Q 010920 113 GVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA 192 (497)
Q Consensus 113 h~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ 192 (497)
|+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~--------------------- 161 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLI-VASKYGRSEIVKKLLELGADIS--------------------- 161 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTT---------------------
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCC---------------------
Confidence 99999999999999999999998 88999999999 8999999999999998886553
Q ss_pred HHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 193 VIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 193 ~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
..+..|.||+++|+..++.+.+++|.+.
T Consensus 162 ----------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 162 ----------ARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp ----------CBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------CcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 3446789999999999999999988653
No 73
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.90 E-value=2.3e-24 Score=212.69 Aligned_cols=205 Identities=11% Similarity=-0.062 Sum_probs=142.0
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCcccc-----------------CCCCChHHHHHHHhCCcHHHHHHHHHcCCC
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWM-----------------DKEGKTPLIVACMDSGLINVAKTLIELGAN 76 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~-----------------d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~ 76 (497)
+..|.|+++ |+.++|++||++|++++.. .....+.+|+|+.. ...+++++|++.|++
T Consensus 49 ~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~l~~~g~d 122 (327)
T 1sw6_A 49 LPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS-LLQEVNDAFPNTQLN 122 (327)
T ss_dssp BCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHH-HHHHHHHHCTTSCCC
T ss_pred CCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHh-hHHHHHHHHHhcCCC
Confidence 346777765 6777777777777665431 11111224555554 446677777777777
Q ss_pred CCC-cCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC---HHHHHHHHHCC-CcccccccccC
Q 010920 77 INA-YRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH---INVVRAIESHI-CYFCGWLREFY 142 (497)
Q Consensus 77 ~~~-~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~---~~~v~~Ll~~g-~~i~~~~~~~~ 142 (497)
+|. .+. +..|+.++|++|+++|++++.+|..|+||||+|+..|+ .++++.|++++ ++++ .+|..
T Consensus 123 vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~--~~d~~ 200 (327)
T 1sw6_A 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI--LEDSM 200 (327)
T ss_dssp SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG--EECTT
T ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc--CCCCC
Confidence 766 443 66677888888888888888899999999999999998 67888888876 6788 89999
Q ss_pred CCCHHHHHhhh----cCCHHHHHHhhhC--------------------CCCCCCCCcccccccccCCcCcCHHHHHHHhh
Q 010920 143 GPSFLEALAPQ----LMSRKIWVVVIPC--------------------GTANPSKPLRFELVIYPSLQDVQPRAVIALWK 198 (497)
Q Consensus 143 G~T~Lh~~A~~----~~~~~iv~~Ll~~--------------------ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 198 (497)
|.|||| +|+. .++.+++++|++. |++.+..+..+.++++.+.. +.. +..
T Consensus 201 g~tpLh-~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~---~~~---Ll~ 273 (327)
T 1sw6_A 201 NRTILH-HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD---LKW---IIA 273 (327)
T ss_dssp CCCHHH-HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS---HHH---HHH
T ss_pred CCCHHH-HHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH---HHH---HHH
Confidence 999999 8887 8999999999877 77777777778888888774 222 223
Q ss_pred cCCCCCCCCCCChHHHHHHhCChhHHHHHHhCCCC
Q 010920 199 AKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGD 233 (497)
Q Consensus 199 ~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~ 233 (497)
..++..+..|.||||+|+..++.+.+++|...+.+
T Consensus 274 ~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad 308 (327)
T 1sw6_A 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308 (327)
T ss_dssp HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred hCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 47999999999999999999999999999877654
No 74
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=2.2e-23 Score=174.76 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=100.1
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHH
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRL 93 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~ 93 (497)
+..|.||||+|++.|+.+++++|++.|++++.+|..|.||||+|+..|+ .++++ +
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~------------------------~ 58 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ-LEILE------------------------F 58 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTC-HHHHH------------------------H
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCC-HHHHH------------------------H
Confidence 4589999999999999999999999999999999999999999999844 55555 4
Q ss_pred HHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHH
Q 010920 94 LLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 158 (497)
Q Consensus 94 Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~ 158 (497)
|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|...+..+
T Consensus 59 Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~ 120 (123)
T 3aaa_C 59 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT--VKGPDGLTAFE-ATDNQAIKA 120 (123)
T ss_dssp HHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HCCCHHHHH
T ss_pred HHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HhCCHHHHH
Confidence 555566667789999999999999999999999999999999 89999999999 885443333
No 75
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.89 E-value=3.7e-23 Score=183.95 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=118.7
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------- 82 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------- 82 (497)
.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++..+.
T Consensus 31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 109 (172)
T 3v30_A 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYDWNGGTPLLYA 109 (172)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 4577999999999999999999999999999999999999999999998 459999999999999998765
Q ss_pred ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCH
Q 010920 83 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF 146 (497)
Q Consensus 83 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~ 146 (497)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++++. ..+..|.||
T Consensus 110 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~--~~~~~~~~p 171 (172)
T 3v30_A 110 VRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF--QSNLVPADP 171 (172)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS--CC-------
T ss_pred HHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh--cccCCCCCC
Confidence 78899999999999999999999999999999999999999999999999988 788888776
No 76
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.89 E-value=2e-22 Score=177.24 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=134.6
Q ss_pred CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC
Q 010920 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 120 (497)
Q Consensus 49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~ 120 (497)
...||||+|+..|+ .+++++|+++|++++..+. +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 4 ~~~~~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGD-LEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTC-HHHHHHHTTSCCCTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCC-HHHHHHHHhCCCCccccCccCccHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 45699999999955 9999999999999988765 33499999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920 121 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK 200 (497)
Q Consensus 121 ~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 200 (497)
.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.
T Consensus 83 ~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~------------------------------ 129 (162)
T 1ihb_A 83 LDTLQTLLEFQADVN--IEDNEGNLPLH-LAAKEGHLRVVEFLVKHTASN------------------------------ 129 (162)
T ss_dssp HHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHSCCC------------------------------
T ss_pred HHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHccCCC------------------------------
Confidence 999999999999999 89999999999 999999999999999998653
Q ss_pred CCCCCCCCCChHHHHHHhCChhHHHHHHhCCC
Q 010920 201 IDEPKFHQPDPSLTIYDQATKIRYKFASANEG 232 (497)
Q Consensus 201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 232 (497)
++..+..|.|||++|+..++.+.+++|.+.+.
T Consensus 130 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 23445679999999999999999999987654
No 77
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=1.9e-23 Score=194.14 Aligned_cols=135 Identities=19% Similarity=0.170 Sum_probs=110.8
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV 91 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v 91 (497)
.++.+|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+ .+++++|+
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll-------------------- 126 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGH-KDIVEMLF-------------------- 126 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHT--------------------
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCC-HHHHHHHH--------------------
Confidence 356789999999999999999999999999999999999999999999844 55555555
Q ss_pred HHHHhC-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCC
Q 010920 92 RLLLSC-GANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN 170 (497)
Q Consensus 92 ~~Ll~~-ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~ 170 (497)
++ |++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.++++.|+..|+..
T Consensus 127 ----~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 127 ----TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFD-MATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp ----TSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHH-HCCSHHHHHHHC---------
T ss_pred ----cCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHH-HhcchhHHHHHHHHhccchhh
Confidence 44 56677789999999999999999999999999999999 89999999999 999999999999999999876
Q ss_pred CCCC
Q 010920 171 PSKP 174 (497)
Q Consensus 171 ~~~~ 174 (497)
...+
T Consensus 200 ~~~~ 203 (222)
T 3ehr_A 200 TLSN 203 (222)
T ss_dssp ----
T ss_pred hccc
Confidence 4433
No 78
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.89 E-value=3.9e-22 Score=177.01 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=130.5
Q ss_pred CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHH
Q 010920 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 117 (497)
Q Consensus 47 d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~ 117 (497)
...+.|+||+|+..|+ .+++++|+++|++++..+. +..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 11 ~~~~~~~l~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGR-DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp --CHHHHHHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCcccchHHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 3457799999999955 9999999999999988765 78899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHh
Q 010920 118 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 197 (497)
Q Consensus 118 ~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 197 (497)
.|+.+++++|+++|++++ ..|..|.|||| +|+..++.+++++|+++|++.
T Consensus 90 ~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~--------------------------- 139 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADVN--ANDMEGHTPLH-LAAMFGHLEIVEVLLKNGADV--------------------------- 139 (169)
T ss_dssp TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCT---------------------------
T ss_pred cCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCC---------------------------
Confidence 999999999999999998 78999999999 899999999999999888654
Q ss_pred hcCCCCCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 198 KAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 198 ~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
+..+..|.||+++|+..++...+++|.+.
T Consensus 140 ----~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 140 ----NAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp ----TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred ----CCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 33445789999999999999999888653
No 79
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.89 E-value=3.4e-22 Score=176.84 Aligned_cols=146 Identities=16% Similarity=0.067 Sum_probs=130.3
Q ss_pred CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 119 (497)
Q Consensus 49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g 119 (497)
.|.||||+|+..|+ .+++++|++.+++++..+. +..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~-~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGE-MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTC-HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCC-HHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 58899999999955 9999999999999888765 7789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhc
Q 010920 120 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA 199 (497)
Q Consensus 120 ~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 199 (497)
+.+++++|+++|++++ ..|..|.|||| +|+..++.+++++|+++|++..
T Consensus 81 ~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~---------------------------- 129 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVN--EYDWNGGTPLL-YAVHGNHVKCVKMLLESGADPT---------------------------- 129 (167)
T ss_dssp CHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTT----------------------------
T ss_pred CHHHHHHHHHCCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC----------------------------
Confidence 9999999999999998 88999999999 8999999999999998886553
Q ss_pred CCCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920 200 KIDEPKFHQPDPSLTIYDQATKIRYKFASA 229 (497)
Q Consensus 200 ~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~ 229 (497)
..+..|.||+++|+..+....++++..
T Consensus 130 ---~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 130 ---IETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp ---CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred ---CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 344578999999999999999988864
No 80
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=5.8e-24 Score=191.94 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=99.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCChHHHHHHHhCC---cHHHHHHHHHcCCCCCCcCc---------c
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSG---LINVAKTLIELGANINAYRP---------A 83 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d-~~G~TpLh~Aa~~g~---~~~~v~~Ll~~ga~~~~~~~---------~ 83 (497)
+.++|+.|++.|+.+.++.++..+. +.++ ..|+||||+|+.+|+ +.+++++||++|+++|.++. +
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 3456666666666666666665543 2333 456666666666532 12355555555555555443 2
Q ss_pred cCCC------HHHHHHHHhCCCCCcccCCCCC-CHHHHHHHcC-----CHHHHHHHHH-CCCcccccccccCCCCHHHHH
Q 010920 84 KRGL------EPTVRLLLSCGANALVRNDDCH-TALGVARIKG-----HINVVRAIES-HICYFCGWLREFYGPSFLEAL 150 (497)
Q Consensus 84 ~~g~------~~~v~~Ll~~ga~~~~~~~~g~-T~Lh~A~~~g-----~~~~v~~Ll~-~g~~i~~~~~~~~G~T~Lh~~ 150 (497)
..++ .+++++|+++|+++|.+|..|. ||||+|+..+ +.+++++|++ +|++++ .+|..|.|||| +
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~TpL~-~ 160 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTALE-F 160 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCHHH-H
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCHHH-H
Confidence 2222 4677888888888888888888 8888888844 3568888888 888888 78888888888 8
Q ss_pred hhhcCCHHHHHHhhhCC
Q 010920 151 APQLMSRKIWVVVIPCG 167 (497)
Q Consensus 151 A~~~~~~~iv~~Ll~~g 167 (497)
|+..++.+++++|....
T Consensus 161 A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 161 VKRCQKPIALKMMEDYI 177 (186)
T ss_dssp HHTTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 88888888888887654
No 81
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.88 E-value=7.2e-22 Score=172.18 Aligned_cols=143 Identities=17% Similarity=0.127 Sum_probs=126.4
Q ss_pred CChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCH
Q 010920 50 GKTPLIVACMDSGLINVAKTLIELGANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 121 (497)
Q Consensus 50 G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~ 121 (497)
+.|+||+|+..|+ .+++++|+++|++++.... +..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 2 ~~~~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 2 LGKKLLEAARAGQ-DDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ccHHHHHHHHcCC-HHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 4589999999965 9999999999998764221 778999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCC
Q 010920 122 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI 201 (497)
Q Consensus 122 ~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 201 (497)
+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+
T Consensus 81 ~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~------------------------------ 127 (153)
T 1awc_B 81 NIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVH------------------------------ 127 (153)
T ss_dssp HHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTT------------------------------
T ss_pred HHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCcc------------------------------
Confidence 99999999999998 88999999999 8999999999999999886653
Q ss_pred CCCCCCCCChHHHHHHhCChhHHHHH
Q 010920 202 DEPKFHQPDPSLTIYDQATKIRYKFA 227 (497)
Q Consensus 202 ~~~~~~g~~pl~~a~~~~~~~~~~~l 227 (497)
..+..|.||+++|+..++.+.+++|
T Consensus 128 -~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 128 -TQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 3456788999999999999888876
No 82
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=2.1e-22 Score=181.26 Aligned_cols=113 Identities=21% Similarity=0.169 Sum_probs=98.3
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR 92 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~ 92 (497)
.+..|.||||+|++.|+.+++++|++ |+++|.+|..|.||||+|+..|+ .+++++|+++|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~-~~~v~~Ll~~g------------------ 99 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGS-DKCVRLLAEAG------------------ 99 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHHTT------------------
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHHHcC------------------
Confidence 35689999999999999999999999 99999999999999999999854 66666665555
Q ss_pred HHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhc
Q 010920 93 LLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 154 (497)
Q Consensus 93 ~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~ 154 (497)
++++.++ ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..
T Consensus 100 ------a~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~ 153 (183)
T 3deo_A 100 ------ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREI 153 (183)
T ss_dssp ------CCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred ------CCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHH-HHHHh
Confidence 5555566 789999999999999999999999999998 89999999999 77654
No 83
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.87 E-value=7e-24 Score=212.11 Aligned_cols=202 Identities=13% Similarity=-0.024 Sum_probs=150.7
Q ss_pred cCCCchHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCC-----CCcCc---
Q 010920 14 RQSKDELLYQWVIAGDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIELGANI-----NAYRP--- 82 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~---n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~-----~~~~~--- 82 (497)
+.++.||||+||+.|+.++|++|+++|+.. +..+..|.||||+||.. ++.++|++|+++|+++ +..+.
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~~~~~TpL 167 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAENYHAF 167 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc-CCHHHHHHHHhCCCCccccccCCCCCCHH
Confidence 447789999999999999999999999832 23455788999999998 5699999999999763 22222
Q ss_pred ---ccCCCHHHHHHHHhCCCCCcc--cCCCCCCHHHHHH-HcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCC
Q 010920 83 ---AKRGLEPTVRLLLSCGANALV--RNDDCHTALGVAR-IKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 156 (497)
Q Consensus 83 ---~~~g~~~~v~~Ll~~ga~~~~--~~~~g~T~Lh~A~-~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~ 156 (497)
+..|+.++|++|+++|++++. .|..|.||||+|+ ..|+.++|++|+++|+ .|.|||| .|+..|+
T Consensus 168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~taL~-~Aa~~g~ 237 (376)
T 2aja_A 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---------MLAYAEI-HEFEYGE 237 (376)
T ss_dssp HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---------HHHHHHH-CTTTTTT
T ss_pred HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---------ccchHHH-HHHHCCC
Confidence 889999999999999999887 8889999999999 9999999999998663 2779999 9999999
Q ss_pred HHHHHHhhhCCCCCCCCCcccccccccCCcCcC---------------------------HHHHHHHhh-------cCCC
Q 010920 157 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ---------------------------PRAVIALWK-------AKID 202 (497)
Q Consensus 157 ~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~~l~~-------~~~~ 202 (497)
.+++++|+++|++....+. ++..+...++ ...+..+.. ....
T Consensus 238 ~evv~lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g 313 (376)
T 2aja_A 238 KYVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313 (376)
T ss_dssp TTHHHHHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred HHHHHHHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence 9999999999876432211 1111111111 111111110 0112
Q ss_pred CCCCCCCChHHHHHHhCChhHHHHHHhC
Q 010920 203 EPKFHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 203 ~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
.....+.+||++|+..++.+.+++|...
T Consensus 314 ~~~n~~~~~L~~A~~~g~~e~v~lLl~~ 341 (376)
T 2aja_A 314 TIPGDANELLRLALRLGNQGACALLLSI 341 (376)
T ss_dssp SSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred CCCCCccHHHHHHHHcCcHHHHHHHHcC
Confidence 2234456789999999999999999864
No 84
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=3.9e-21 Score=167.86 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=128.2
Q ss_pred CChHHHHHHHhCCcHHHHHHHHHc-CCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC
Q 010920 50 GKTPLIVACMDSGLINVAKTLIEL-GANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH 120 (497)
Q Consensus 50 G~TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~ 120 (497)
|.||||+|+..|+ .+++++|++. +.+++..+. +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGD-VQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCC-HHHHHHHHHhhCcCccccCCCCCcHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 5699999999965 9999999998 347777655 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcC
Q 010920 121 INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAK 200 (497)
Q Consensus 121 ~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 200 (497)
.+++++|+++|++++ .+|..|.|||| +|+..|+.+++++|+++ ++.
T Consensus 81 ~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~-~~~------------------------------ 126 (156)
T 1bd8_A 81 LDTLKVLVEHGADVN--VPDGTGALPIH-LAVQEGHTAVVSFLAAE-SDL------------------------------ 126 (156)
T ss_dssp HHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHHTCHHHHHHHHTT-SCT------------------------------
T ss_pred HHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHhChHHHHHHHHhc-cCC------------------------------
Confidence 999999999999999 89999999999 99999999999999977 443
Q ss_pred CCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920 201 IDEPKFHQPDPSLTIYDQATKIRYKFASA 229 (497)
Q Consensus 201 ~~~~~~~g~~pl~~a~~~~~~~~~~~l~~ 229 (497)
+..+..|.|||++|+..++.+.+++|.+
T Consensus 127 -~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 127 -HRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp -TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred -CCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 2345678999999999999999988864
No 85
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.2e-22 Score=189.94 Aligned_cols=128 Identities=20% Similarity=0.149 Sum_probs=102.4
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHH
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVR 92 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~ 92 (497)
.+..|.||||+|++.|+.++|++|++ |+++|.+|..|.||||+|+..|+ .++|++|+++|++++
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~-~~~v~~Ll~~ga~~~-------------- 104 (244)
T 3ui2_A 41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGS-DKCVRLLAEAGADLD-------------- 104 (244)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTC-HHHHHHHHHTTCCTT--------------
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCC-HHHHHHHHHcCCCCC--------------
Confidence 35689999999999999999999999 99999999999999999999844 677766666665554
Q ss_pred HHHhCCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhh----------------hcC
Q 010920 93 LLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAP----------------QLM 155 (497)
Q Consensus 93 ~Ll~~ga~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~----------------~~~ 155 (497)
.++ ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+ ..|
T Consensus 105 ----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~-~A~~~~~~~~~~~~l~~a~~~g 171 (244)
T 3ui2_A 105 ----------HRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILKTTPKGNPMQFGRRIG 171 (244)
T ss_dssp ----------CCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHHTTCCCSSHHHHHHHHH
T ss_pred ----------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHH-HHHHHHhccCCCCHHHHHHHcC
Confidence 445 567777777777777777777777777777 67777777777 555 667
Q ss_pred CHHHHHHhhhCCCC
Q 010920 156 SRKIWVVVIPCGTA 169 (497)
Q Consensus 156 ~~~iv~~Ll~~ga~ 169 (497)
+.+++++|+.++.+
T Consensus 172 ~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 172 LEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHHEE
T ss_pred hHHHHHHHHHhccc
Confidence 88888888876543
No 86
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=1.1e-21 Score=204.59 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=114.8
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCcccc------CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP 89 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~------d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~ 89 (497)
...+.||.|+..|+.++|+.||+.|+++|.. |..|.||||+|+... ..|+.+
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a----------------------~~g~~~ 188 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA----------------------NQASLP 188 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTC----------------------CTTTHH
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhc----------------------ccccHH
Confidence 3457899999999999999999999999988 889999999998731 234566
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920 90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~ 169 (497)
++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..|+.+++++|+++|++
T Consensus 189 ~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~ga~ 265 (497)
T 3lvq_E 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAG 265 (497)
T ss_dssp HHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCS--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTCC-
T ss_pred HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhCCC
Confidence 6666667777778889999999999999999999999999999999 89999999999 99999999999999999999
Q ss_pred CCCCCcccccccccC
Q 010920 170 NPSKPLRFELVIYPS 184 (497)
Q Consensus 170 ~~~~~~~~~~~l~~~ 184 (497)
.+.++.+....+...
T Consensus 266 ~~~~~~h~~~~~~~~ 280 (497)
T 3lvq_E 266 TFAFPLHVDYSWVIS 280 (497)
T ss_dssp ---------------
T ss_pred CCCCcceeeccccCC
Confidence 988877555544433
No 87
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=7.8e-22 Score=191.91 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=117.1
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCccc------cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEW------MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP 89 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~------~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~ 89 (497)
.+.++||.|++.|+.+.|+.|++.|++++. .+..|.||||+|+..++ .++.+
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~----------------------~~~~~ 207 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVAN----------------------QASLP 207 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCC----------------------TTTHH
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcc----------------------cCcHH
Confidence 356789999999999999999999999998 68899999999999732 23456
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920 90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~ 169 (497)
++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++
T Consensus 208 iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp HHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhcCC
Confidence 6666666667777889999999999999999999999999999999 89999999999 99999999999999999987
Q ss_pred CCCCC
Q 010920 170 NPSKP 174 (497)
Q Consensus 170 ~~~~~ 174 (497)
.+.++
T Consensus 285 ~g~tp 289 (301)
T 2b0o_E 285 TFAFP 289 (301)
T ss_dssp TTSSC
T ss_pred CCCCh
Confidence 54333
No 88
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.86 E-value=1.2e-21 Score=167.29 Aligned_cols=132 Identities=13% Similarity=0.033 Sum_probs=113.8
Q ss_pred CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920 40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 119 (497)
Q Consensus 40 ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g 119 (497)
+++++.+|..|.||||+|+..|+ .+++++|+ ++|++++.+|..|.||||+|+. |
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~~-~ 55 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQ-VETVRQLL------------------------EAGADPNALNRFGRRPIQVMMM-G 55 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTC-HHHHHHHH------------------------HTTCCTTCCCTTCCTTTTTSTT-S
T ss_pred CCCccCCCCCCccHHHHHHHcCC-HHHHHHHH------------------------HcCCCcCCcCCCCCCHHHHHHc-C
Confidence 47899999999999999999854 55555555 5555666788999999999999 9
Q ss_pred CHHHHHHHHHCCCcccccccccC-CCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhh
Q 010920 120 HINVVRAIESHICYFCGWLREFY-GPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK 198 (497)
Q Consensus 120 ~~~~v~~Ll~~g~~i~~~~~~~~-G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 198 (497)
+.+++++|+++|++++ .+|.. |.|||| +|+..++.+++++|+++|++.+
T Consensus 56 ~~~~v~~Ll~~g~~~~--~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~--------------------------- 105 (136)
T 1d9s_A 56 SAQVAELLLLHGAEPN--CADPATLTRPVH-DAAREGFLDTLVVLHRAGARLD--------------------------- 105 (136)
T ss_dssp CHHHHHHHHHHTCCSS--CCBTTTTBCHHH-HHHHHTCHHHHHHHHHTCCCCC---------------------------
T ss_pred CHHHHHHHHHCCCCCC--CcCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC---------------------------
Confidence 9999999999999999 89999 999999 9999999999999999986653
Q ss_pred cCCCCCCCCCCChHHHHHHhCChhHHHHHHhCC
Q 010920 199 AKIDEPKFHQPDPSLTIYDQATKIRYKFASANE 231 (497)
Q Consensus 199 ~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~ 231 (497)
..+..|.|||++|+..++.+.+++|...+
T Consensus 106 ----~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 106 ----VCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp ----CCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----ccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 34567899999999999999999887654
No 89
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.86 E-value=6.6e-21 Score=170.63 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=126.8
Q ss_pred CCCChHHHHHHHhCCcHHHHHHHHHc-CCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHH
Q 010920 48 KEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 117 (497)
Q Consensus 48 ~~G~TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~ 117 (497)
..+.++||.|+..|+ .+++++|++. +.+++..+. +..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGN-AVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTC-HHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 467899999999965 9999999998 666777665 88899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHH--HH
Q 010920 118 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV--IA 195 (497)
Q Consensus 118 ~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~--~~ 195 (497)
.|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+........+ +.
T Consensus 82 ~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADIN--AVNEHGNVPLH-YACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 89999999999 99999999999999999988877776677777777654443332 22
Q ss_pred HhhcCCCCCC
Q 010920 196 LWKAKIDEPK 205 (497)
Q Consensus 196 l~~~~~~~~~ 205 (497)
..+++++...
T Consensus 159 ~~g~~~~~~~ 168 (179)
T 3f6q_A 159 KMGQNLNRIP 168 (179)
T ss_dssp HTTCCCSCBC
T ss_pred HhhcCcccCC
Confidence 3555555443
No 90
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=4.6e-21 Score=152.20 Aligned_cols=93 Identities=27% Similarity=0.420 Sum_probs=77.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHH
Q 010920 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLL 95 (497)
Q Consensus 16 ~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll 95 (497)
+|.||||+|++.|+.+++++|++.|+++|.+|..|.||||+|+..|+ .+++++|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~-~~~v~~Ll------------------------ 55 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH-LEVVKLLL------------------------ 55 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-HHHHHHHH------------------------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC-HHHHHHHH------------------------
Confidence 48899999999999999999999999999999999999999999744 55544444
Q ss_pred hCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCc
Q 010920 96 SCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 133 (497)
Q Consensus 96 ~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~ 133 (497)
++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 56 ~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 55566667788899999999999999999999998874
No 91
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.85 E-value=4.9e-22 Score=186.84 Aligned_cols=153 Identities=15% Similarity=0.054 Sum_probs=99.1
Q ss_pred CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCc--------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920 48 KEGKTPLIVACMDSGLINVAKTLIELGANINAYRP--------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 119 (497)
Q Consensus 48 ~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~--------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g 119 (497)
..|.||||.|+.. +..++++.|+++|++++.... +..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~-~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRT-NLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhh-hhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 4699999999998 559999999999999987643 7899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccc-cccccC--CcCc--CHHHHH
Q 010920 120 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE-LVIYPS--LQDV--QPRAVI 194 (497)
Q Consensus 120 ~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~-~~l~~~--~~~~--~~~~~~ 194 (497)
+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+. ++++.+ ...+ ....++
T Consensus 82 ~~~~v~~Ll~~ga~~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVN--AADSDGWTPLH-CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp CHHHHHHHHHHTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred CHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 9999999999999999 89999999999 99999999999999999999876665444 666665 3332 233333
Q ss_pred HHhhcCCCCC
Q 010920 195 ALWKAKIDEP 204 (497)
Q Consensus 195 ~l~~~~~~~~ 204 (497)
...+++++..
T Consensus 159 l~~~a~~~~~ 168 (239)
T 1ycs_B 159 YGVQEKMGIM 168 (239)
T ss_dssp HHHHHHTTTT
T ss_pred HHhhhccccc
Confidence 3345544443
No 92
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.85 E-value=1.1e-21 Score=177.02 Aligned_cols=121 Identities=22% Similarity=0.267 Sum_probs=108.1
Q ss_pred CCCchHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCChHHHHHHHhCCc-----HHHHHHHHHcCCCCCCcCc---
Q 010920 15 QSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGL-----INVAKTLIELGANINAYRP--- 82 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~g~~----~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~-----~~~v~~Ll~~ga~~~~~~~--- 82 (497)
..|.||||+|+..|+. +++++||++|+++|.+|..|+||||+|+..|.. .+++++|+++|+++|.++.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ 115 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence 6799999999999985 599999999999999999999999999998542 6899999999999999875
Q ss_pred -------ccC-----CCHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc
Q 010920 83 -------AKR-----GLEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 135 (497)
Q Consensus 83 -------~~~-----g~~~~v~~Ll~-~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~ 135 (497)
+.. ++.+++++|++ +|++++.+|..|.||||+|+..|+.++|++|.++..+.+
T Consensus 116 ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp BCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 332 23568999999 999999999999999999999999999999998876655
No 93
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.85 E-value=1e-20 Score=166.94 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=116.8
Q ss_pred cCCCCChHHHHHHHhCCcHHHHHHHHHc-CCCCCCcCc---------ccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHH
Q 010920 46 MDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRP---------AKRGLEPTVRLLLSCGANALVRNDDCHTALGVA 115 (497)
Q Consensus 46 ~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~-ga~~~~~~~---------~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A 115 (497)
.|..|.||||+|+..|+ .++++.|++. +.+++..+. +..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGD-VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTC-HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCC-HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 46678999999999965 9999999985 445555443 788999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCc
Q 010920 116 RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQ 186 (497)
Q Consensus 116 ~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~ 186 (497)
+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+..
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~ 150 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVN--VADLWKFTPLH-EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT
T ss_pred HHcCcHHHHHHHHhCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc
Confidence 99999999999999999998 89999999999 9999999999999999998876666555555555443
No 94
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=8.7e-21 Score=182.40 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=113.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHH
Q 010920 17 KDELLYQWVIAGDVDAIRALRSQGASL------EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPT 90 (497)
Q Consensus 17 G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~------n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~ 90 (497)
..++|+.|++.|+.+.++.|++.|+++ +..|..|.||||+|+..|+ .|+.++
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~----------------------~~~~~~ 187 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD----------------------RTSLHI 187 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCC----------------------TTTHHH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcc----------------------cchHHH
Confidence 357999999999999999999999984 4458899999999999841 133555
Q ss_pred HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCC
Q 010920 91 VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN 170 (497)
Q Consensus 91 v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~ 170 (497)
+++|+++|+++|.+|..|.||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..|+.+++++|+++|++.
T Consensus 188 v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 188 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCC
Confidence 556666667777789999999999999999999999999999999 89999999999 999999999999999999864
No 95
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=8.6e-21 Score=189.03 Aligned_cols=128 Identities=19% Similarity=0.225 Sum_probs=113.2
Q ss_pred cCCCchHHHHHHHc-CCHHHHHHHHHcCCCccccC--CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHH
Q 010920 14 RQSKDELLYQWVIA-GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPT 90 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~~-g~~~~v~~Ll~~ga~~n~~d--~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~ 90 (497)
+..+.|+||+|+.. |+.++|++||++|+++|..+ ..|.||||+|+..|+ .+++++|+
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~-~~iv~~LL------------------- 255 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS-LLACEFLL------------------- 255 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTC-HHHHHHHH-------------------
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCC-HHHHHHHH-------------------
Confidence 44677899999999 99999999999999999998 899999999999844 55555555
Q ss_pred HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920 91 VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 91 v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~ 169 (497)
++|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.|||| +|+..++.+++++|+..+..
T Consensus 256 -----~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~-~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 256 -----QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG--ARDSEGRDPLT-IAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp -----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHC-
T ss_pred -----HcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence 5556666788999999999999999999999999999999 89999999999 99999999999999987744
No 96
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=4.9e-21 Score=158.34 Aligned_cols=109 Identities=24% Similarity=0.339 Sum_probs=94.2
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV 91 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v 91 (497)
.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .++++
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~-~~~~~----------------------- 59 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH-AEIVK----------------------- 59 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTC-HHHHH-----------------------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc-HHHHH-----------------------
Confidence 358899999999999999999999999999999999999999999999744 55555
Q ss_pred HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHH
Q 010920 92 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFL 147 (497)
Q Consensus 92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~L 147 (497)
+|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||-
T Consensus 60 -~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~~ 112 (115)
T 2l6b_A 60 -LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN--ARSWGSSHHH 112 (115)
T ss_dssp -HHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHH--HHSCCCC---
T ss_pred -HHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--cCCccccccc
Confidence 4555566667788999999999999999999999999999999 7888888873
No 97
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=4.2e-20 Score=157.75 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=99.6
Q ss_pred CCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Q 010920 40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKG 119 (497)
Q Consensus 40 ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g 119 (497)
|+|+ .+|..|.||||+|+..|+ .+++++|+ ++|++++.+|..|.||||+|+..|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~-~~~~~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~~~~ 54 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGD-IPSVEYLL------------------------QNGSDPNVKDHAGWTPLHEACNHG 54 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTC-HHHHHHHH------------------------HTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred CCCC-CcCCCCCCHHHHHHHcCC-HHHHHHHH------------------------HcCCCCCcCCCCCCCHHHHHHHcC
Confidence 6677 789999999999999854 55555555 455566678899999999999999
Q ss_pred CHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcC
Q 010920 120 HINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD 187 (497)
Q Consensus 120 ~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~ 187 (497)
+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+...
T Consensus 55 ~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~ 119 (137)
T 3c5r_A 55 HLKVVELLLQHKALVN--TTGYQNDSPLH-DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119 (137)
T ss_dssp CHHHHHHHHHTTCCTT--CCCGGGCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH
T ss_pred CHHHHHHHHHcCCccc--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc
Confidence 9999999999999999 89999999999 99999999999999999988877776667777766643
No 98
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=173.72 Aligned_cols=153 Identities=11% Similarity=-0.012 Sum_probs=114.5
Q ss_pred HHHHHHcCCCccccC---CCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCC
Q 010920 33 IRALRSQGASLEWMD---KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCH 109 (497)
Q Consensus 33 v~~Ll~~ga~~n~~d---~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~ 109 (497)
|+.||++|++++..+ .+|.||||+|+..|+ .+++++|++.| ++++.+|..|.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~-~~~v~~Ll~~g------------------------~~~~~~d~~g~ 55 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGE-LEVVQQAVKEM------------------------NDPSQPNEEGI 55 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTC-HHHHHHHHHHS------------------------SCTTCCCTTSC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCC-HHHHHHHHhcC------------------------CCCCCCCCCCC
Confidence 578899998876654 456788999999955 66666666554 55566788999
Q ss_pred CHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCC-cccccccccC--Cc
Q 010920 110 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP-LRFELVIYPS--LQ 186 (497)
Q Consensus 110 T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~-~~~~~~l~~~--~~ 186 (497)
||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..|+.+++++|+++|++.+..+ ..+.++++.+ ..
T Consensus 56 tpLh~A~~~g~~~~v~~Ll~~ga~~n--~~d~~g~tpLh-~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~ 132 (229)
T 2vge_A 56 TALHNAICGANYSIVDFLITAGANVN--SPDSHGWTPLH-CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYR 132 (229)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTS
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHh
Confidence 99999999999999999999999999 89999999999 9999999999999999999987764 4677888777 55
Q ss_pred CcCHHHHHH--HhhcCCCCCCCCCCChHH
Q 010920 187 DVQPRAVIA--LWKAKIDEPKFHQPDPSL 213 (497)
Q Consensus 187 ~~~~~~~~~--l~~~~~~~~~~~g~~pl~ 213 (497)
.+....+.. ..+++++..+..|.+|++
T Consensus 133 ~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~ 161 (229)
T 2vge_A 133 EGYADCATYLADVEQSMGLMNSGAVYALW 161 (229)
T ss_dssp TTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred cChHHHHHHHHHcCCCcccccCCchHHHH
Confidence 555444333 366677777766666555
No 99
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.82 E-value=1.4e-19 Score=154.34 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=106.2
Q ss_pred cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHH
Q 010920 46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125 (497)
Q Consensus 46 ~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~ 125 (497)
....|.||||+|+..|+ .+++++|+ ++|++++.+|..|.||||+|+..|+.++++
T Consensus 10 ~~~~~~t~l~~A~~~g~-~~~v~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 64 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQ-DDEVRILM------------------------ANGADVNAKDEYGLTPLYLATAHGHLEIVE 64 (136)
T ss_dssp --CHHHHHHHHHHHHTC-HHHHHHHH------------------------HTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred ccccccHHHHHHHHhCC-HHHHHHHH------------------------HcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 34568899999999955 55555555 555566678899999999999999999999
Q ss_pred HHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCC
Q 010920 126 AIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPK 205 (497)
Q Consensus 126 ~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 205 (497)
+|+++|++++ ..|..|.|||| +|+..++.+++++|+++|++.+ ..+
T Consensus 65 ~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~-------------------------------~~~ 110 (136)
T 2jab_A 65 VLLKNGADVN--AVDAIGFTPLH-LAAFIGHLEIAEVLLKHGADVN-------------------------------AQD 110 (136)
T ss_dssp HHHHTTCCTT--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTT-------------------------------CCC
T ss_pred HHHHcCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCc-------------------------------CcC
Confidence 9999999999 89999999999 9999999999999999886553 334
Q ss_pred CCCCChHHHHHHhCChhHHHHHHhC
Q 010920 206 FHQPDPSLTIYDQATKIRYKFASAN 230 (497)
Q Consensus 206 ~~g~~pl~~a~~~~~~~~~~~l~~~ 230 (497)
..|.|||++|+..++.+.+++|.+.
T Consensus 111 ~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 111 KFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 6789999999999999999888653
No 100
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=9.5e-20 Score=144.54 Aligned_cols=93 Identities=24% Similarity=0.354 Sum_probs=80.9
Q ss_pred CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Q 010920 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128 (497)
Q Consensus 49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll 128 (497)
+|+||||+|+..|+ .+++++|+ ++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus 1 ~g~t~L~~A~~~~~-~~~v~~Ll------------------------~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll 55 (93)
T 1n0q_A 1 NGRTPLHLAARNGH-LEVVKLLL------------------------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55 (93)
T ss_dssp --CCHHHHHHHHTC-HHHHHHHH------------------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcHHHHHHHcCC-HHHHHHHH------------------------HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 48999999999854 55555555 555666678899999999999999999999999
Q ss_pred HCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCC
Q 010920 129 SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 169 (497)
Q Consensus 129 ~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~ 169 (497)
++|++++ .+|..|.|||| +|+..++.+++++|+++|++
T Consensus 56 ~~ga~~~--~~d~~g~t~l~-~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 56 EAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCC
T ss_pred HcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence 9999999 89999999999 99999999999999999975
No 101
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.81 E-value=4.7e-19 Score=148.19 Aligned_cols=125 Identities=20% Similarity=0.237 Sum_probs=107.1
Q ss_pred CCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Q 010920 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIE 128 (497)
Q Consensus 49 ~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll 128 (497)
+|.||||+|+..|+ .+++++|+++| ++++..+..|.||||+|+..|+.+++++|+
T Consensus 1 ~g~t~L~~A~~~~~-~~~v~~Ll~~~------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 55 (126)
T 1n0r_A 1 NGRTPLHLAARNGH-LEVVKLLLEAG------------------------ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55 (126)
T ss_dssp CCCCHHHHHHHHTC-HHHHHHHHHHT------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCccHHHHHHHcCc-HHHHHHHHHcC------------------------CCCCCcCCCCCcHHHHHHHcCcHHHHHHHH
Confidence 58999999999955 66666666554 455567889999999999999999999999
Q ss_pred HCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCC
Q 010920 129 SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQ 208 (497)
Q Consensus 129 ~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g 208 (497)
++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+ ..+..|
T Consensus 56 ~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~g~~~~-------------------------------~~~~~g 101 (126)
T 1n0r_A 56 EAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGADVN-------------------------------AKDKNG 101 (126)
T ss_dssp HTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTT-------------------------------CCCTTS
T ss_pred HcCCCCc--ccCCCCCcHHH-HHHHcChHHHHHHHHHcCCCCc-------------------------------ccCCCC
Confidence 9999998 89999999999 9999999999999999886653 344568
Q ss_pred CChHHHHHHhCChhHHHHHHhCCC
Q 010920 209 PDPSLTIYDQATKIRYKFASANEG 232 (497)
Q Consensus 209 ~~pl~~a~~~~~~~~~~~l~~~~~ 232 (497)
.||+++|+..+....+++|...+.
T Consensus 102 ~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 102 RTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCC
Confidence 899999999999999998876554
No 102
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.80 E-value=3.7e-20 Score=161.93 Aligned_cols=134 Identities=13% Similarity=0.014 Sum_probs=103.8
Q ss_pred ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH
Q 010920 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122 (497)
Q Consensus 43 ~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~ 122 (497)
.+..+..|.||||+|+..|+ .+++++|+ ++|++++.++..|.||||+|+ .|+.+
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~-~~~v~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~-~~~~~ 58 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGR-VEEVRALL------------------------EAGANPNAPNSYGRRPIQVMM-MGSAR 58 (156)
T ss_dssp -----CCSTTHHHHHHHHTC-HHHHHHHH------------------------TTTCCTTCCCSSSCCTTTSSC-TTCHH
T ss_pred ccCCCccchHHHHHHHHcCC-HHHHHHHH------------------------HcCCCCCCCCCCCCCHHHHHH-cCCHH
Confidence 34567789999999999955 55555555 555666678899999999995 99999
Q ss_pred HHHHHHHCCCcccccccccCCCC-HHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCC
Q 010920 123 VVRAIESHICYFCGWLREFYGPS-FLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI 201 (497)
Q Consensus 123 ~v~~Ll~~g~~i~~~~~~~~G~T-~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 201 (497)
++++|+++|++++ .+|..|.| ||| +|+..++.+++++|+++|++.+..
T Consensus 59 ~v~~Ll~~g~~~~--~~d~~g~ttpL~-~A~~~~~~~~v~~Ll~~ga~~~~~---------------------------- 107 (156)
T 1bi7_B 59 VAELLLLHGAEPN--CADPATLTRPVH-DAAREGFLDTLVVLHRAGARLDVR---------------------------- 107 (156)
T ss_dssp HHHHHHTTTCCCC--CCCTTTCCCHHH-HHHHHTCHHHHHHHHHHTCCSSCC----------------------------
T ss_pred HHHHHHHcCCCCC--CcCCCCCcHHHH-HHHHCCCHHHHHHHHHcCCCCccc----------------------------
Confidence 9999999999999 89999999 999 999999999999999998766433
Q ss_pred CCCCCCCCChHHHHHHhCChhHHHHHHhCCCCHHH
Q 010920 202 DEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQ 236 (497)
Q Consensus 202 ~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~ 236 (497)
+..|.|||++|+..++.+.+++|...+.+...
T Consensus 108 ---d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~ 139 (156)
T 1bi7_B 108 ---DAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139 (156)
T ss_dssp ---CTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred ---CCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence 45677788888888888888877766655433
No 103
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.80 E-value=3.4e-21 Score=173.33 Aligned_cols=139 Identities=13% Similarity=0.034 Sum_probs=115.4
Q ss_pred CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q 010920 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 126 (497)
Q Consensus 47 d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~ 126 (497)
+..|.||||+|+..|+ .+++++|+ + |++++.+|..|.||||+|+..|+.+++++
T Consensus 41 ~~~g~t~L~~A~~~g~-~~~v~~Ll------------------------~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 94 (183)
T 3deo_A 41 VSEYETPWWTAARKAD-EQALSQLL------------------------E-DRDVDAVDENGRTALLFVAGLGSDKCVRL 94 (183)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHT------------------------T-TSCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCCCCCHHHHHHHcCC-HHHHHHHH------------------------h-cCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 4578999999999854 55555555 4 56667788999999999999999999999
Q ss_pred HHHCCCcccccccc-cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCC
Q 010920 127 IESHICYFCGWLRE-FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPK 205 (497)
Q Consensus 127 Ll~~g~~i~~~~~~-~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 205 (497)
|+++|++++ .++ ..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+.+..+ .
T Consensus 95 Ll~~ga~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~---------~------ 156 (183)
T 3deo_A 95 LAEAGADLD--HRDMRGGLTALH-MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK---------T------ 156 (183)
T ss_dssp HHHTTCCTT--CCCSSSSCCHHH-HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH---------T------
T ss_pred HHHcCCCCC--cCCCCCCCCHHH-HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc---------C------
Confidence 999999998 677 89999999 9999999999999999999988888778888877663211 1
Q ss_pred CCCCChHHHHHHhCChhHHHHHHh
Q 010920 206 FHQPDPSLTIYDQATKIRYKFASA 229 (497)
Q Consensus 206 ~~g~~pl~~a~~~~~~~~~~~l~~ 229 (497)
..+.+++++++..+....+++|.+
T Consensus 157 ~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 157 TPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHcCHHHHHHHHHH
Confidence 346788999999888888887754
No 104
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.79 E-value=2.2e-21 Score=182.96 Aligned_cols=168 Identities=12% Similarity=-0.009 Sum_probs=135.3
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHH
Q 010920 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLL 94 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~L 94 (497)
..+.++++.++..|+.+.+..+...+.++ +..|.||||+|+..|+ .+++++|+
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~~~g~-~~~v~~Ll----------------------- 65 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKAD-EQALSQLL----------------------- 65 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHHTTTC-HHHHHHTT-----------------------
T ss_pred CCCccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHHHcCC-HHHHHHHH-----------------------
Confidence 35667777777777777766655554443 3578999999999854 55555544
Q ss_pred HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccc-cCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCC
Q 010920 95 LSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSK 173 (497)
Q Consensus 95 l~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~ 173 (497)
+ |++++.+|..|.||||+|+..|+.++|++|+++|++++ .++ ..|.|||| +|+..|+.+++++|+++|++.+..
T Consensus 66 -~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~~~~ 140 (244)
T 3ui2_A 66 -E-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD--HRDMRGGLTALH-MAAGYVRPEVVEALVELGADIEVE 140 (244)
T ss_dssp -T-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred -c-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--cCCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCC
Confidence 5 56677789999999999999999999999999999998 677 88999999 999999999999999999999888
Q ss_pred CcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHhCChhHHHHHHh
Q 010920 174 PLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 229 (497)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~ 229 (497)
+..+.++++.+.... ....+.+||++|+..+....++++..
T Consensus 141 d~~g~t~l~~A~~~~---------------~~~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 141 DERGLTALELAREIL---------------KTTPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp CTTCCCHHHHHHHHH---------------TTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHH---------------hccCCCCHHHHHHHcChHHHHHHHHH
Confidence 888888888766211 12567899999999999888887764
No 105
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.78 E-value=8.3e-19 Score=146.70 Aligned_cols=110 Identities=9% Similarity=-0.038 Sum_probs=88.6
Q ss_pred CCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Q 010920 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRA 126 (497)
Q Consensus 47 d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~ 126 (497)
+..|.||||+|+..|+ .+++++|+ +.|++++.+|..|.||||+|+..|+.+++++
T Consensus 4 ~~~~~~~l~~A~~~~~-~~~v~~ll------------------------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 58 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGD-LDEVKDYV------------------------AKGEDVNRTLEGGRKPLHYAADCGQLEILEF 58 (123)
T ss_dssp ---CHHHHHHHHHTTC-HHHHHHHH------------------------HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHH
T ss_pred ccccchHHHHHHHcCC-HHHHHHHH------------------------HcCCCcCccCCCCCcHHHHHHHcCCHHHHHH
Confidence 4578899999999855 55555555 5555666788899999999999999999999
Q ss_pred HHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccC
Q 010920 127 IESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPS 184 (497)
Q Consensus 127 Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~ 184 (497)
|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+.++++.+
T Consensus 59 Ll~~g~~~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 59 LLLKGADIN--APDKHHITPLL-SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHTTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHHcCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 999999999 89999999999 99999999999999999987655554344444433
No 106
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=174.33 Aligned_cols=111 Identities=20% Similarity=0.129 Sum_probs=90.3
Q ss_pred hcCCCchHHHHHHHc---CCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHH
Q 010920 13 QRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEP 89 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~---g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~ 89 (497)
.+..|.||||+|+.. |+.+++++||++|+++|.+|..|.||||+|+..|+ .+++++|
T Consensus 186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~-~~~v~~L------------------- 245 (301)
T 2b0o_E 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ-PDCLKLL------------------- 245 (301)
T ss_dssp SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTC-HHHHHHH-------------------
T ss_pred cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHH-------------------
Confidence 367999999999997 89999999999999999999999999999999854 5555554
Q ss_pred HHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHHHHhhhcCCH
Q 010920 90 TVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 157 (497)
Q Consensus 90 ~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~ 157 (497)
+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.|||| +|+..|+.
T Consensus 246 -----l~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh-~A~~~g~~ 299 (301)
T 2b0o_E 246 -----LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLH-VDYSWVIS 299 (301)
T ss_dssp -----HHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC---------
T ss_pred -----HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhH-HHHhcCCc
Confidence 455566677899999999999999999999999998765 4789999 88887753
No 107
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.76 E-value=9.1e-20 Score=182.26 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=127.6
Q ss_pred CchHHHHHHH-cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCC------CCCCcCc------c
Q 010920 17 KDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA------NINAYRP------A 83 (497)
Q Consensus 17 G~T~Lh~Aa~-~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga------~~~~~~~------~ 83 (497)
+.+++++|+. .++.+++++|+++|++. .||||+|+..|+ .++|++|+++|+ +++..+. +
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~-~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGC-SSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCC-HHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence 4678888887 57899999999987764 499999999955 999999999998 3333332 8
Q ss_pred cCCCHHHHHHHHhCCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccc--cccCCCCHHHHHhh-hcCCH
Q 010920 84 KRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL--REFYGPSFLEALAP-QLMSR 157 (497)
Q Consensus 84 ~~g~~~~v~~Ll~~ga~~---~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~--~~~~G~T~Lh~~A~-~~~~~ 157 (497)
..|+.++|++|+++|+++ +..+.+ .||||+|+..|+.++|++|+++|++++ . .|..|.|||| +|+ ..|+.
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~--~~~~d~~g~TpL~-~Aa~~~G~~ 212 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFR-WAAVGRGHH 212 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHH-HHHSTTCCH
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc--hhccCCCCCCHHH-HHHHHCCCH
Confidence 899999999999999762 333333 999999999999999999999999987 5 7889999999 899 99999
Q ss_pred HHHHHhhhCCCCCCCCCcccccccccCCcCcCHHH
Q 010920 158 KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRA 192 (497)
Q Consensus 158 ~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ 192 (497)
++|++|+++|++ +.++++.+...++...
T Consensus 213 eiv~~Ll~~ga~-------~~taL~~Aa~~g~~ev 240 (376)
T 2aja_A 213 NVINFLLDCPVM-------LAYAEIHEFEYGEKYV 240 (376)
T ss_dssp HHHHHHTTSHHH-------HHHHHHCTTTTTTTTH
T ss_pred HHHHHHHhCCCc-------cchHHHHHHHCCCHHH
Confidence 999999997742 6677777776666543
No 108
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=5.2e-18 Score=139.00 Aligned_cols=91 Identities=25% Similarity=0.371 Sum_probs=74.0
Q ss_pred hhcCCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHH
Q 010920 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTV 91 (497)
Q Consensus 12 ~~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v 91 (497)
+.+.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+ .+++++|+
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~-~~~v~~Ll-------------------- 77 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGH-LEVVKLLL-------------------- 77 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC-HHHHHHHH--------------------
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC-HHHHHHHH--------------------
Confidence 346789999999999999999999999999999999999999999999744 55555444
Q ss_pred HHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Q 010920 92 RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAI 127 (497)
Q Consensus 92 ~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~L 127 (497)
++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 78 ----~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 78 ----EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp ----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ----HcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 45556666788899999999999999999876
No 109
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.74 E-value=1.4e-18 Score=161.10 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=92.2
Q ss_pred cCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHH
Q 010920 46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVR 125 (497)
Q Consensus 46 ~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~ 125 (497)
.+..|.||||+|+..|+ .+++++|+ +.|++++.+|..|.||||+|+..|+.++|+
T Consensus 69 ~~~~g~t~L~~A~~~g~-~~~v~~Ll------------------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 123 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGN-LSWLRECL------------------------DNRVGVNGLDKAGSTALYWACHGGHKDIVE 123 (222)
T ss_dssp HEEEESCHHHHHHHHTC-HHHHHHHH------------------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cccccccccccccccCc-HHHHHHHH------------------------hCCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 45678999999999855 55555555 555666678899999999999999999999
Q ss_pred HHHHC-CCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCC
Q 010920 126 AIESH-ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSL 185 (497)
Q Consensus 126 ~Ll~~-g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~ 185 (497)
+|+++ |++++ .+|..|.|||| +|+..|+.+++++|+++|++.+..+..+.++++.+.
T Consensus 124 ~Ll~~~g~~~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 181 (222)
T 3ehr_A 124 MLFTQPNIELN--QQNKLGDTALH-AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181 (222)
T ss_dssp HHTTSTTCCCC--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC
T ss_pred HHHcCCCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc
Confidence 99999 99999 89999999999 999999999999999999877655544444444444
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.74 E-value=1.7e-18 Score=142.89 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=89.0
Q ss_pred ccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHH
Q 010920 45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV 124 (497)
Q Consensus 45 ~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v 124 (497)
.+|.+|.||||+|+..|+ .+++++|+ ++|++++.+|..|.||||+|+..|+.+++
T Consensus 4 ~~d~~g~t~L~~A~~~~~-~~~~~~Ll------------------------~~g~~~~~~d~~g~t~L~~A~~~~~~~~~ 58 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGH-AEEVKKLL------------------------SKGADVNARSKDGNTPLHLAAKNGHAEIV 58 (115)
T ss_dssp CCSCSSCCHHHHHHHHTC-HHHHHHHT------------------------TTTCCSSCCCSSSCCTTHHHHTTTCHHHH
T ss_pred ccCCCCCCHHHHHHHcCC-HHHHHHHH------------------------HcCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence 478899999999999855 55555554 55566677889999999999999999999
Q ss_pred HHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCC
Q 010920 125 RAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP 174 (497)
Q Consensus 125 ~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~ 174 (497)
++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+...
T Consensus 59 ~~Ll~~g~~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~ga~~n~~~ 105 (115)
T 2l6b_A 59 KLLLAKGADVN--ARSKDGNTPEH-LAKKNGHHEIVKLLDAKGADVNARS 105 (115)
T ss_dssp HHHTTTTCCTT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTSSSHHHHS
T ss_pred HHHHHcCCCCc--ccCCCCCCHHH-HHHHCCCHHHHHHHHHcCCCCCcCC
Confidence 99999999999 89999999999 9999999999999999999865444
No 111
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.72 E-value=1.3e-16 Score=153.17 Aligned_cols=165 Identities=9% Similarity=-0.077 Sum_probs=121.0
Q ss_pred hcCCCchHHHHHHHcCCHHHHHHHHHcCCCccc-c-CC-----------------------------CCChHHHHHHHhC
Q 010920 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEW-M-DK-----------------------------EGKTPLIVACMDS 61 (497)
Q Consensus 13 ~~~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~-~-d~-----------------------------~G~TpLh~Aa~~g 61 (497)
.|.-+.+.|+.+...|+..+.+++...-..... + +. ...++|+.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 356889999999999998877766432111110 0 00 0123455555553
Q ss_pred CcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHc---CCHHHHHHHHHCCCcccccc
Q 010920 62 GLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK---GHINVVRAIESHICYFCGWL 138 (497)
Q Consensus 62 ~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~g~~i~~~~ 138 (497)
+ .+.++.|+..|++++.. ..++..+..|.||||+|+.. |+.+++++|+++|++++ .
T Consensus 142 d-~~~~~~ll~~g~~~~~~------------------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in--~ 200 (278)
T 1dcq_A 142 D-IFGLLQAYADGVDLTEK------------------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD--K 200 (278)
T ss_dssp C-HHHHHHHHHTTCCTTSB------------------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT--C
T ss_pred c-cHHHHHHHHhhcchhhh------------------ccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc--c
Confidence 3 44444444444443321 00444578899999999999 89999999999999999 8
Q ss_pred cccCCCCHHHHHhhhcCCHHHHHHhhhCCCCCCCCCcccccccccCCcCcCHHHHHHHhhcCCCCCCCCCCChHHHHHHh
Q 010920 139 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ 218 (497)
Q Consensus 139 ~~~~G~T~Lh~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~g~~pl~~a~~~ 218 (497)
+|..|.|||| +|+..|+.+++++|+++|++.+ ..+..|.||||+|+..
T Consensus 201 ~d~~g~TpLh-~A~~~g~~~~v~~Ll~~gad~~-------------------------------~~d~~g~tpL~~A~~~ 248 (278)
T 1dcq_A 201 QTGKGSTALH-YCCLTDNAECLKLLLRGKASIE-------------------------------IANESGETPLDIAKRL 248 (278)
T ss_dssp CCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTT-------------------------------CCCTTSCCHHHHHHHT
T ss_pred cCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC-------------------------------CccCCCCCHHHHHHHc
Confidence 9999999999 9999999999999999987653 3456799999999999
Q ss_pred CChhHHHHHHhC
Q 010920 219 ATKIRYKFASAN 230 (497)
Q Consensus 219 ~~~~~~~~l~~~ 230 (497)
++.+.+++|...
T Consensus 249 ~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 249 KHEHCEELLTQA 260 (278)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 999999988754
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.71 E-value=1.9e-17 Score=172.43 Aligned_cols=102 Identities=23% Similarity=0.174 Sum_probs=83.9
Q ss_pred cCCCchHHHHHHH---cCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHH
Q 010920 14 RQSKDELLYQWVI---AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPT 90 (497)
Q Consensus 14 ~~~G~T~Lh~Aa~---~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~ 90 (497)
+..|.||||+|++ .|+.++|++||++|+++|.+|..|.||||+|+..|+ .++|+
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~-~~~v~---------------------- 224 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ-PDCLK---------------------- 224 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTC-HHHHH----------------------
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC-HHHHH----------------------
Confidence 6789999999977 999999999999999999999999999999999844 55555
Q ss_pred HHHHHhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCcccccccccCCCCHHH
Q 010920 91 VRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE 148 (497)
Q Consensus 91 v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~~~~~~~~G~T~Lh 148 (497)
+|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ . +|||
T Consensus 225 --~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~--~------~~~h 272 (497)
T 3lvq_E 225 --LLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF--A------FPLH 272 (497)
T ss_dssp --HHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----------------
T ss_pred --HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC--C------Ccce
Confidence 5555566667789999999999999999999999999999997 3 5777
No 113
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.70 E-value=4.8e-17 Score=161.93 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=82.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHcCCCccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHH
Q 010920 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLL 94 (497)
Q Consensus 15 ~~G~T~Lh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~L 94 (497)
..|.||||+|+..|+.++|++||++|+++|.+|..|.||||+|+..|+ .+++++|+
T Consensus 233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~-~~~v~~LL----------------------- 288 (368)
T 3jue_A 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH-TGLACLFL----------------------- 288 (368)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHH-----------------------
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHH-----------------------
Confidence 689999999999999999999999999999999999999999999844 55555555
Q ss_pred HhCCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCccc-ccccccCCCCHHHHHhh
Q 010920 95 LSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC-GWLREFYGPSFLEALAP 152 (497)
Q Consensus 95 l~~ga~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~i~-~~~~~~~G~T~Lh~~A~ 152 (497)
++|++++.+|..|.||||+|+..|+.+++++|+..+..-. ....+..+.|+|+ ++.
T Consensus 289 -~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~-i~~ 345 (368)
T 3jue_A 289 -KRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD-IFR 345 (368)
T ss_dssp -HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred -HCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH-HHH
Confidence 5556667789999999999999999999999998764321 1145667889998 443
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=1.3e-16 Score=130.62 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=77.9
Q ss_pred ccccCCCCChHHHHHHHhCCcHHHHHHHHHcCCCCCCcCcccCCCHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCHH
Q 010920 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHIN 122 (497)
Q Consensus 43 ~n~~d~~G~TpLh~Aa~~g~~~~~v~~Ll~~ga~~~~~~~~~~g~~~~v~~Ll~~ga~~~~~~~~g~T~Lh~A~~~g~~~ 122 (497)
+...|.+|.||||+|+..|+ .+++++|+ ++|++++.+|..|.||||+|+..|+.+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~-~~~v~~Ll------------------------~~g~~i~~~d~~g~tpLh~A~~~~~~~ 71 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQ-DDEVRILM------------------------ANGADVAAKDKNGSTPLHLAARNGHLE 71 (110)
T ss_dssp -----CCHHHHHHHHHHHTC-HHHHHHHH------------------------HTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred ccccCCccchHHHHHHHcCC-HHHHHHHH------------------------HcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 34567889999999999955 55555555 555666678899999999999999999
Q ss_pred HHHHHHHCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 010920 123 VVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 163 (497)
Q Consensus 123 ~v~~Ll~~g~~i~~~~~~~~G~T~Lh~~A~~~~~~~iv~~L 163 (497)
++++|+++|++++ .+|..|.|||| +|+..++.+++++|
T Consensus 72 ~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 72 VVKLLLEAGADVX--AQDKFGKTAFD-ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCCcc--ccccCCCcHHH-HHHHcCCHHHHHHh
Confidence 9999999999999 89999999999 99999999999987
No 115
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.41 E-value=8.8e-14 Score=101.07 Aligned_cols=55 Identities=35% Similarity=0.849 Sum_probs=50.5
Q ss_pred CCcccccccccCCceEEe--CCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 442 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~--pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
++..|+||++.+.+++++ ||||+++|..|+.+|...+..||+||++|...+++|.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 455899999999999988 9999966999999999877789999999999999995
No 116
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.39 E-value=1.4e-13 Score=99.66 Aligned_cols=55 Identities=27% Similarity=0.804 Sum_probs=50.0
Q ss_pred CCcccccccccCCceEEe--CCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 442 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~--pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
....|+||++.+.+++++ ||||+++|..|+.++.....+||+||++|..++++|.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 345899999999998887 9999966999999999877899999999999999996
No 117
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.8e-13 Score=97.44 Aligned_cols=53 Identities=28% Similarity=0.734 Sum_probs=47.4
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
..+...|.||++.+.+++++||||+++|..|+..+. +||+||.+|...+++|.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence 345679999999999999999999955999999765 89999999999999984
No 118
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.18 E-value=5.2e-12 Score=95.76 Aligned_cols=52 Identities=33% Similarity=0.948 Sum_probs=47.1
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
.+...|+||++.+.+++++||||.++|..|+..+. .||+||.+|...+++|.
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBC
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEe
Confidence 44568999999999999999999955999999886 99999999999999984
No 119
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.13 E-value=1.3e-11 Score=92.51 Aligned_cols=52 Identities=29% Similarity=0.735 Sum_probs=47.2
Q ss_pred CCCCcccccccccCCceEEeCCCCc-cchHHHHHHHhccCcccccccccccceeEeee
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHM-AGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~-~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
..+...|+||++.+.+++++||||. | |..|+..|. .||+||.+|...+++|.
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~-C~~C~~~~~----~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVT-CKQCAEAVD----KCPMCYTVITFKQKILM 73 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCC-CHHHHTTCS----BCTTTCCBCSEEEECBC
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhH-HHHhhhcCc----cCCCcCcCccCcEEEee
Confidence 3455699999999999999999999 6 999999984 99999999999999984
No 120
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.2e-11 Score=88.85 Aligned_cols=56 Identities=21% Similarity=0.665 Sum_probs=48.6
Q ss_pred CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
+..+...|+||++.+.+ +.+||+|.| |..|+.+|......||+||.++.....+|.
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 34566799999999999 888999999 999999999888899999999987666553
No 121
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=7.3e-11 Score=87.76 Aligned_cols=50 Identities=26% Similarity=0.660 Sum_probs=44.8
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.+++.+||||.| |..|+.+|......||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 34556999999999999999999999 999999998877899999998853
No 122
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.9e-11 Score=90.92 Aligned_cols=51 Identities=29% Similarity=0.808 Sum_probs=46.1
Q ss_pred CCCcccccccccCCceEEeCCCCc-cchHHHHHHHhccCcccccccccccceeEeee
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHM-AGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~-~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
.+...|+||++.+.+++++||||. | |..|+.++. .||+||.+|...+++|.
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~-C~~C~~~~~----~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVT-CKQCAEAVD----KCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCB-CHHHHHHCS----BCTTTCCBCCCCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHH-HHHHhhCCC----CCccCCceecCcEEEec
Confidence 445689999999999999999999 6 999998765 89999999999999985
No 123
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.7e-10 Score=88.26 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=45.3
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.+++.+||||.| |..|+.+|......||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence 45567999999999999999999999 999999999877889999999864
No 124
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.3e-10 Score=86.63 Aligned_cols=55 Identities=22% Similarity=0.479 Sum_probs=47.2
Q ss_pred ccCCCCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCccccccccccccee
Q 010920 437 VKDDGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 492 (497)
Q Consensus 437 ~~~~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~ 492 (497)
..+..+...|+||++.+.+++.+ ||||.| |..|+.+|...+..||+||.++....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCccc
Confidence 33456677999999999998887 999999 99999999987789999999986543
No 125
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.03 E-value=5.9e-11 Score=88.35 Aligned_cols=54 Identities=35% Similarity=0.791 Sum_probs=46.4
Q ss_pred CCCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCccccccccccc--ceeEee
Q 010920 441 GSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY 495 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~ 495 (497)
.+...|+||++.+.+. +.+||||.| |..|+.+|...+..||+||.++. .++++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 4556999999988775 888999999 99999999988889999999985 456666
No 126
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.02 E-value=9.4e-11 Score=85.25 Aligned_cols=54 Identities=35% Similarity=0.771 Sum_probs=46.3
Q ss_pred CCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCccccccccccc--ceeEeee
Q 010920 442 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLYT 496 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~~ 496 (497)
+...|+||++.+.+. +.+||||.| |..|+.+|...+..||+||.++. ..+++|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 345899999987765 788999999 99999999988889999999995 5777763
No 127
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=4.8e-10 Score=83.83 Aligned_cols=50 Identities=26% Similarity=0.698 Sum_probs=43.8
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc---cCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~---~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.+++.+||||.| |..|+..|.. ....||+||.++..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 45567999999999999999999999 9999999986 34689999998853
No 128
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.99 E-value=1.6e-10 Score=85.16 Aligned_cols=53 Identities=26% Similarity=0.765 Sum_probs=46.2
Q ss_pred CCcccccccccCCc-eEEeCCCCccchHHHHHHHhccCcccccccccccceeEee
Q 010920 442 SSSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 495 (497)
Q Consensus 442 ~~~~C~iC~~~~~~-~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~ 495 (497)
....|+||++.+.+ ++.+||||.| |..|+.+|...+..||+||.++...+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 44589999999988 4788999999 99999999987889999999998766543
No 129
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.99 E-value=3.7e-10 Score=83.40 Aligned_cols=53 Identities=23% Similarity=0.621 Sum_probs=44.8
Q ss_pred CCCCcccccccccC---CceEEeCCCCccchHHHHHHHhccCcccccccccccceeE
Q 010920 440 DGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 493 (497)
Q Consensus 440 ~~~~~~C~iC~~~~---~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~ 493 (497)
......|+||++.+ ..++.+||+|.| |..|+..|...+..||+||..|...++
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 45567999998876 457788999999 999999999888899999999876554
No 130
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.98 E-value=1.4e-10 Score=98.36 Aligned_cols=50 Identities=32% Similarity=0.765 Sum_probs=45.2
Q ss_pred CCcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccccee
Q 010920 442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 492 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~ 492 (497)
++..|+||++.+.+++.+||||.| |..|+..|...+..||+||.+|....
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 345799999999999999999999 99999999988889999999997654
No 131
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.1e-10 Score=84.74 Aligned_cols=50 Identities=36% Similarity=0.804 Sum_probs=43.4
Q ss_pred CCCCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.+. +.+||||.| |..|+.+|...+..||+||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 44566999999988765 888999999 999999999878899999998864
No 132
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.95 E-value=9.6e-10 Score=84.80 Aligned_cols=49 Identities=33% Similarity=0.696 Sum_probs=44.0
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc------Cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~------~~~Cp~Cr~~i~ 489 (497)
..+...|+||++.+.+++.+||||.| |..|+..|... ...||+||.++.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 45567999999999999999999999 99999999876 678999999885
No 133
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.93 E-value=3.9e-10 Score=79.21 Aligned_cols=47 Identities=32% Similarity=0.726 Sum_probs=41.6
Q ss_pred CCcccccccccCCc----eEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920 442 SSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 489 (497)
Q Consensus 442 ~~~~C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 489 (497)
....|+||++.+.+ ++.+||+|.| |..|+.+|......||+||.+|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 34589999998865 8889999999 99999999987789999999875
No 134
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.5e-10 Score=82.14 Aligned_cols=50 Identities=22% Similarity=0.532 Sum_probs=43.8
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.+++.+||||.| |..|+.+|.. ....||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45567999999999999989999999 9999999994 55789999998854
No 135
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.92 E-value=5.2e-10 Score=83.78 Aligned_cols=49 Identities=22% Similarity=0.624 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCceEEeC-CCCccchHHHHHHHhccC--cccccccccc
Q 010920 439 DDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKI 488 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~~~~~~~p-C~H~~~C~~C~~~~~~~~--~~Cp~Cr~~i 488 (497)
+..+...|+||++.+.+++.+| |||.| |..|+..|...+ ..||+||.++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcC
Confidence 3556779999999999999999 99999 999999999754 6899999975
No 136
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.91 E-value=6.9e-10 Score=86.73 Aligned_cols=50 Identities=34% Similarity=0.685 Sum_probs=43.6
Q ss_pred CCCCcccccccccCCc---eEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.. ++.+||+|.| |..|+..|...+..||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 3456699999998776 7788999999 999999999888899999998754
No 137
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.91 E-value=9.9e-10 Score=83.24 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~ 489 (497)
..+...|+||++.+.+++.+||||.| |..|+.+|... ...||+||.++.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34567999999999999999999999 99999999986 688999999984
No 138
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4.7e-10 Score=84.10 Aligned_cols=55 Identities=24% Similarity=0.478 Sum_probs=44.9
Q ss_pred cCCCCCcccccccccCCc---eEEeCCCCccchHHHHHHHhccCcccccccccccceeE
Q 010920 438 KDDGSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 493 (497)
Q Consensus 438 ~~~~~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~ 493 (497)
.+......|+||++.+.+ +..+||+|.| |..|+.+|......||+||.+|.....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCcccccccc
Confidence 335566799999998653 4556999999 999999999877899999999876544
No 139
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.1e-09 Score=85.12 Aligned_cols=49 Identities=31% Similarity=0.651 Sum_probs=43.3
Q ss_pred CCCCcccccccccCCc----eEEeCCCCccchHHHHHHHhccC---ccccccccccc
Q 010920 440 DGSSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~----~~~~pC~H~~~C~~C~~~~~~~~---~~Cp~Cr~~i~ 489 (497)
..+...|+||++.+.+ ++.+||||.| |..|+.+|.... ..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 4566799999999998 9999999999 999999998754 78999999773
No 140
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.90 E-value=5.9e-10 Score=78.23 Aligned_cols=47 Identities=23% Similarity=0.693 Sum_probs=41.3
Q ss_pred CCCcccccccccCCc---eEEeC-CCCccchHHHHHHHhccCcccccccccc
Q 010920 441 GSSSSCVICWEAPVE---GACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~---~~~~p-C~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
++...|+||++.+.+ ++.+| |+|.| |..|+.+|...+..||+||.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEe
Confidence 345699999999877 77777 99999 9999999998888999999876
No 141
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.89 E-value=2.3e-10 Score=87.03 Aligned_cols=49 Identities=31% Similarity=0.725 Sum_probs=43.5
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-------Cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-------KGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-------~~~Cp~Cr~~i~ 489 (497)
..+...|+||++.+.+++.+||||.| |..|+.+|... ...||+||.++.
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 45667999999999999999999999 99999998875 578999999884
No 142
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=8.6e-10 Score=85.09 Aligned_cols=49 Identities=33% Similarity=0.758 Sum_probs=43.7
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhcc------Cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~------~~~Cp~Cr~~i~ 489 (497)
..+...|+||++.+.+++.+||||.| |..|+..|... ...||+||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 45567999999999999999999999 99999999875 678999999885
No 143
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.86 E-value=1e-09 Score=83.22 Aligned_cols=50 Identities=30% Similarity=0.653 Sum_probs=42.1
Q ss_pred CCCCcccccccccCC---ceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~---~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+. .+..+||+|.| |..|+.+|...+..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence 445679999988764 34667999999 999999999888899999998854
No 144
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.85 E-value=1.5e-09 Score=85.05 Aligned_cols=49 Identities=22% Similarity=0.631 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCceEEeC-CCCccchHHHHHHHhcc--Ccccccccccc
Q 010920 439 DDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAK--KGDCPVCRTKI 488 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~~~~~~~p-C~H~~~C~~C~~~~~~~--~~~Cp~Cr~~i 488 (497)
...+...|+||++.+.+++.+| |||.| |..|+..|... ...||+||.++
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3566779999999999999999 99999 99999999863 35899999986
No 145
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=8.3e-10 Score=82.96 Aligned_cols=50 Identities=22% Similarity=0.567 Sum_probs=42.3
Q ss_pred CCCCcccccccccCCc---eEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.. ++.+||+|.| |..|+.+|...+..||+||..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3455699999987765 4778999999 999999999888899999998754
No 146
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3.9e-09 Score=76.30 Aligned_cols=44 Identities=27% Similarity=0.716 Sum_probs=39.2
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhc---cCcccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVC 484 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~---~~~~Cp~C 484 (497)
..+...|+||++.+.+++.+||||.| |..|+.+|.. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 45667999999999999999999999 9999999997 34689998
No 147
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.83 E-value=1.4e-09 Score=81.76 Aligned_cols=55 Identities=27% Similarity=0.660 Sum_probs=43.5
Q ss_pred CCCCcccccccccC--CceEEeC--CCCccchHHHHHHHhc-cCcccccccccccceeEee
Q 010920 440 DGSSSSCVICWEAP--VEGACVP--CGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRLY 495 (497)
Q Consensus 440 ~~~~~~C~iC~~~~--~~~~~~p--C~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~~ 495 (497)
..++..|+||++.+ .++.++| |||.| |..|+.+++. ....||.||+++.....+|
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 45567999999977 4566666 99999 9999999974 3578999999997654444
No 148
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=1.9e-09 Score=78.46 Aligned_cols=46 Identities=28% Similarity=0.652 Sum_probs=37.5
Q ss_pred Ccccccccc-cCCce----EEeCCCCccchHHHHHHHhc-cCccccccccccc
Q 010920 443 SSSCVICWE-APVEG----ACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKIN 489 (497)
Q Consensus 443 ~~~C~iC~~-~~~~~----~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 489 (497)
+..|+||++ ...+. +.+||||.| |..|+.+|.. .+..||+||.++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCccc
Confidence 458999999 44443 568999999 9999999954 4468999999984
No 149
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.80 E-value=1.5e-09 Score=86.35 Aligned_cols=49 Identities=24% Similarity=0.676 Sum_probs=43.7
Q ss_pred CCCCcccccccccCCceEE-eCCCCccchHHHHHHHhccC-ccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKK-GDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~-~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~ 489 (497)
..+...|+||++.+.+++. ++|||.| |..|+.+|.... ..||+||.++.
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence 3455699999999999999 9999999 999999999866 68999999883
No 150
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=4.1e-09 Score=74.77 Aligned_cols=44 Identities=32% Similarity=0.727 Sum_probs=38.4
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHh---ccCcccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIK---AKKGDCPVC 484 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~---~~~~~Cp~C 484 (497)
..+...|+||++.+.+++.+||||.| |..|+.+|. .....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 44567999999999999999999999 999999994 345789998
No 151
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.77 E-value=2.1e-09 Score=85.54 Aligned_cols=49 Identities=24% Similarity=0.608 Sum_probs=44.1
Q ss_pred CCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCcccccccccccc
Q 010920 441 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
.+...|+||++.+.+++.+ ||||.| |..|+..|...+..||+||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4456999999999999888 999999 999999999888899999998853
No 152
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.75 E-value=3.1e-09 Score=88.29 Aligned_cols=49 Identities=24% Similarity=0.576 Sum_probs=43.1
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~ 490 (497)
.+...|+||++.+.+++.+||||.| |..|+..|... ...||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3456899999999999999999999 99999999874 3589999999865
No 153
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.74 E-value=5e-09 Score=84.71 Aligned_cols=50 Identities=20% Similarity=0.596 Sum_probs=45.0
Q ss_pred CCCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.+++.+ ||||.| |..|+..|...+..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 34567999999999999998 999999 999999999877899999999864
No 154
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.73 E-value=8.9e-09 Score=79.07 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=45.5
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.++|.+||||.| |..|+.+|......||+||.++..
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45678999999999999999999999 999999999877899999998743
No 155
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=8.8e-10 Score=77.51 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=39.6
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 489 (497)
..+...|+||++.+.+++.+||||.| |..|+..+. ..||+||..+.
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~---~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASG---MQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSS---SSCSSCCSSSS
T ss_pred cccCCCceEeCCccCCeEEcCCCCcc-cHHHHccCC---CCCCcCCcEee
Confidence 34566899999999999999999999 999987743 48999999875
No 156
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=7.6e-09 Score=100.96 Aligned_cols=51 Identities=33% Similarity=0.758 Sum_probs=45.8
Q ss_pred CcccccccccCCceEEeCCCCccchHHHHHHHhc-cCcccccccccccceeEe
Q 010920 443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL 494 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~ 494 (497)
...|+||++...+++.+||||.| |..|+..|.. ....||+||.+|.....+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 46999999999999999999999 9999999987 567999999999876554
No 157
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.69 E-value=2.2e-08 Score=78.92 Aligned_cols=50 Identities=10% Similarity=-0.004 Sum_probs=45.4
Q ss_pred CCCCcccccccccCCceEEeCCC-CccchHHHHHHHhccCcccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~-H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.++|.+||| |.| |..|+.+|......||+||.++..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45677999999999999999999 999 999999999877899999998853
No 158
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.69 E-value=1.2e-08 Score=80.72 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=45.6
Q ss_pred CCCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCccccccccccc
Q 010920 439 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 489 (497)
Q Consensus 439 ~~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 489 (497)
+..+...|+||++.+.++|.+||||.| |..|+.+|......||+||.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCC
Confidence 345678999999999999999999999 99999999987789999999885
No 159
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.68 E-value=3.6e-09 Score=102.84 Aligned_cols=53 Identities=28% Similarity=0.835 Sum_probs=47.0
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccCcccccccccccceeEeee
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 496 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~~~ 496 (497)
..+...|+||++.+.+++++||||.++|..|+..+. .||+||.+|...+++|.
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFL 344 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC-
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeec
Confidence 345679999999999999999999933999999885 89999999999999984
No 160
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.67 E-value=7.2e-09 Score=88.77 Aligned_cols=49 Identities=31% Similarity=0.599 Sum_probs=43.3
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccccc
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~ 490 (497)
.+...|+||++.+.+++.+||||.| |..|+..|.... ..||+||.++..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence 3456899999999999999999999 999999999754 489999999864
No 161
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.67 E-value=9.5e-09 Score=84.47 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.+++.+||||.| |..|+..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 45667999999999999999999999 999999998754 489999998854
No 162
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.64 E-value=4.4e-09 Score=86.14 Aligned_cols=49 Identities=35% Similarity=0.761 Sum_probs=43.2
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~ 490 (497)
.+...|+||++.+.+++.+||||.| |..|+.+|... ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3456999999999999999999999 99999999865 5789999998753
No 163
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.64 E-value=8.1e-09 Score=90.37 Aligned_cols=49 Identities=27% Similarity=0.579 Sum_probs=43.4
Q ss_pred CCCCcccccccccCCceEEe-CCCCccchHHHHHHHhcc-Cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~ 489 (497)
..+...|+||++.+.+++.+ ||||.| |..|+..|... ...||+||.++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence 34566999999999999887 999999 99999999975 678999999884
No 164
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.8e-08 Score=76.66 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=38.3
Q ss_pred CCcccccccccCCc--------------eEEe-CCCCccchHHHHHHHhccCccccccccccc
Q 010920 442 SSSSCVICWEAPVE--------------GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 489 (497)
Q Consensus 442 ~~~~C~iC~~~~~~--------------~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 489 (497)
++..|+||++.+.+ ++.+ +|+|.| +..|+.+|..++..||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcc
Confidence 34478888887754 4444 599999 99999999988889999999874
No 165
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.63 E-value=1.3e-08 Score=83.27 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=38.6
Q ss_pred CcccccccccCCce------------------EEeCCCCccchHHHHHHHh-----ccCcccccccccccc
Q 010920 443 SSSCVICWEAPVEG------------------ACVPCGHMAGCMSCLSEIK-----AKKGDCPVCRTKINQ 490 (497)
Q Consensus 443 ~~~C~iC~~~~~~~------------------~~~pC~H~~~C~~C~~~~~-----~~~~~Cp~Cr~~i~~ 490 (497)
+..|+||++.+... .++||+|.| |..|+..|. ..+..||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 45899999987543 378999999 999999998 345789999988743
No 166
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.60 E-value=1.9e-08 Score=85.18 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=42.8
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKI 488 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i 488 (497)
..+...|+||++.+.+++.++|||.| |..|+.+|.... ..||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 45677999999999999999999999 999999998754 4899999975
No 167
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=1.1e-08 Score=83.22 Aligned_cols=48 Identities=29% Similarity=0.747 Sum_probs=42.1
Q ss_pred CCcccccccccCCceEEeCCCCccchHHHHHHHhccC---cccccccccccc
Q 010920 442 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKINQ 490 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~---~~Cp~Cr~~i~~ 490 (497)
+...|+||++.+.+++.+||||.| |..|+..|.... ..||+||.++..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 456899999999999999999999 999999998754 489999998853
No 168
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.59 E-value=1.3e-08 Score=83.41 Aligned_cols=49 Identities=27% Similarity=0.495 Sum_probs=43.7
Q ss_pred CCCcccccccccCCceEEeCCCCccchHHHHHHHhcc-Ccccccccccccc
Q 010920 441 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~-~~~Cp~Cr~~i~~ 490 (497)
.+...|+||++.+.+++.+||||.| |..|+.+|... ...||+||.++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3456999999999999999999999 99999999975 6789999998854
No 169
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.55 E-value=2.7e-08 Score=83.60 Aligned_cols=48 Identities=38% Similarity=0.840 Sum_probs=42.8
Q ss_pred CCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 442 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
+...|+||++.+.+. +.++|||.| |..|+.+|...+..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence 456999999998776 889999999 999999999888899999999853
No 170
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.52 E-value=3.3e-08 Score=83.10 Aligned_cols=54 Identities=35% Similarity=0.791 Sum_probs=46.5
Q ss_pred CCCcccccccccCCce-------EEeCCCCccchHHHHHHHhccCccccccccccc--ceeEee
Q 010920 441 GSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY 495 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~-------~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~--~~~~~~ 495 (497)
.+...|+||++.+.+. +.++|||.| |..|+.+|...+..||+||.++. ..+++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 3456899999987764 888999999 99999999988889999999984 567777
No 171
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.42 E-value=1.4e-07 Score=75.23 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=39.0
Q ss_pred CCcccccccccCCc------------------eEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 442 SSSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 442 ~~~~C~iC~~~~~~------------------~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
+...|.||++.+.+ ++.+||+|.| +..|+..|...+..||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcc
Confidence 34579999887653 4667999999 9999999998888999999975
No 172
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=3.1e-08 Score=81.23 Aligned_cols=46 Identities=30% Similarity=0.672 Sum_probs=41.3
Q ss_pred CCCcccccccccCCceEEe-CCCCccchHHHHHHHhccCccccccccccc
Q 010920 441 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 489 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~ 489 (497)
.+...|+||++.+.+++.+ ||||.| |..|+..|.. ..||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc--CCCcCCCCcCc
Confidence 4567999999999999999 999999 9999999975 58999999884
No 173
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=1.2e-07 Score=74.18 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=43.1
Q ss_pred CCCcccccccccCCceEEeC-CCCccchHHHHHHHhccC------ccccc--cccc-c--cceeEe
Q 010920 441 GSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK------GDCPV--CRTK-I--NQVIRL 494 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~p-C~H~~~C~~C~~~~~~~~------~~Cp~--Cr~~-i--~~~~~~ 494 (497)
.+...|+||++.+.++|.+| |||.| |..|+..|.... ..||+ |+.. + ...++.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 35569999999999999996 99999 999999999743 58999 9854 3 444443
No 174
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.35 E-value=1.9e-07 Score=81.50 Aligned_cols=50 Identities=20% Similarity=0.082 Sum_probs=43.9
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.++|.+||||.| |..|+..|.... ..||+||.++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45677999999999999999999999 999999999753 369999998853
No 175
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.35 E-value=1.9e-07 Score=82.00 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=44.1
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~~ 490 (497)
..+...|+||++.+.+++.+||||.| |..|+.+|...+ ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 45667999999999999999999999 999999998643 489999998854
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=2.4e-07 Score=88.37 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=43.1
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHhccC-ccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~~~-~~Cp~Cr~~i~ 489 (497)
......|+||++.+.++|.+||||.| |..|+.+|.... ..||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34566999999999999999999999 999999999753 34999999885
No 177
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.19 E-value=2.4e-07 Score=74.96 Aligned_cols=45 Identities=22% Similarity=0.478 Sum_probs=0.4
Q ss_pred CcccccccccCCc------------------eEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 443 SSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 443 ~~~C~iC~~~~~~------------------~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
...|.||++.+.+ ++..||+|.| +..|+..|...+..||+||+++
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCee
Confidence 4589999988754 2335999999 9999999998888999999975
No 178
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.11 E-value=1.7e-06 Score=61.49 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=44.8
Q ss_pred CcccccccccCCceEEe-CCCCccchHHHHHHHhccCcccccccccc--cceeEee
Q 010920 443 SSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKI--NQVIRLY 495 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i--~~~~~~~ 495 (497)
...|+||++...+++.. +|||.| |..|+++|....++||+++.++ ...++++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 45899999999999999 999999 9999999998777899999988 4455554
No 179
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=3.3e-06 Score=63.50 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=39.3
Q ss_pred CCCcccccccccC--CceEEeCCC-----CccchHHHHHHHhccC--cccccccccccc
Q 010920 441 GSSSSCVICWEAP--VEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCRTKINQ 490 (497)
Q Consensus 441 ~~~~~C~iC~~~~--~~~~~~pC~-----H~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~ 490 (497)
.+...|.||++.. .+.+.+||. |.| ...|+.+|...+ ..||+||..+.-
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3456899999765 345678996 999 999999998754 489999998743
No 180
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.92 E-value=5.7e-06 Score=75.70 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=41.6
Q ss_pred CCCcccccccccCCceEEe-CCCCccchHHHHHHHhccC--ccccc--cccccc
Q 010920 441 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPV--CRTKIN 489 (497)
Q Consensus 441 ~~~~~C~iC~~~~~~~~~~-pC~H~~~C~~C~~~~~~~~--~~Cp~--Cr~~i~ 489 (497)
.....|+||++.+.++|.. .|||.| |..|+.+|.... ..||+ ||..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4566999999999999975 999999 999999998743 67999 998773
No 181
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.80 E-value=6.9e-06 Score=64.19 Aligned_cols=45 Identities=24% Similarity=0.549 Sum_probs=35.5
Q ss_pred CCcccccccccCCceEE---eCCCCccchHHHHHHHhcc--------Cccccc--cccc
Q 010920 442 SSSSCVICWEAPVEGAC---VPCGHMAGCMSCLSEIKAK--------KGDCPV--CRTK 487 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~---~pC~H~~~C~~C~~~~~~~--------~~~Cp~--Cr~~ 487 (497)
+...|+||++.+..... .+|||.| |..|+...... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34589999998766433 3899999 99999888752 258999 9987
No 182
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.65 E-value=4.5e-05 Score=58.31 Aligned_cols=49 Identities=22% Similarity=0.529 Sum_probs=37.4
Q ss_pred ccccccccCCc-eEEeCCCCccchHHHHHHHhc-cCcccccccccccceeEe
Q 010920 445 SCVICWEAPVE-GACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL 494 (497)
Q Consensus 445 ~C~iC~~~~~~-~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~~~~~~ 494 (497)
-|.+|--.... ...+||.|.| |..|+..+.. ..+.||.|+.+|.....+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 46677665554 3467999999 9999999864 447899999999776543
No 183
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.00023 Score=52.20 Aligned_cols=50 Identities=22% Similarity=0.612 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCce-EEeCCCCccchHHHHHHHhccC--cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ 490 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~-~~~pC~H~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~ 490 (497)
.+....|.||++.+..- ....|+|.| -..|+.+|.+++ ..||+||.....
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34556999999987643 334899999 999999999866 789999988754
No 184
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.10 E-value=0.00027 Score=49.67 Aligned_cols=49 Identities=29% Similarity=0.480 Sum_probs=37.9
Q ss_pred CCCCcccccccccCCceEEeCCCC-----ccchHHHHHHHhcc--Cccccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGH-----MAGCMSCLSEIKAK--KGDCPVCRTKIN 489 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H-----~~~C~~C~~~~~~~--~~~Cp~Cr~~i~ 489 (497)
.++...|.||++...+....||.+ .| -..|+.+|... +..||+|+..+.
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~-H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhh-HHHHHHHHHHhCCCCccCCCCCeee
Confidence 345569999998766666789764 55 99999999873 578999998653
No 185
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.91 E-value=0.00019 Score=67.89 Aligned_cols=51 Identities=27% Similarity=0.676 Sum_probs=39.3
Q ss_pred CCCCcccccccccCCc------eEE--eCCCCccchHHHHHHHhccC-----------cccccccccccce
Q 010920 440 DGSSSSCVICWEAPVE------GAC--VPCGHMAGCMSCLSEIKAKK-----------GDCPVCRTKINQV 491 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~------~~~--~pC~H~~~C~~C~~~~~~~~-----------~~Cp~Cr~~i~~~ 491 (497)
.+...+|.||++...+ .+. .+|+|.| ...|..+|.+.. +.||+||.+|...
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 3466799999986654 222 3799999 999999998631 6799999998653
No 186
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.57 E-value=0.02 Score=42.88 Aligned_cols=49 Identities=24% Similarity=0.722 Sum_probs=40.0
Q ss_pred CcccccccccCCceEEeCCC-CccchHHHHHHHhccCcccccccccccceeEe
Q 010920 443 SSSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL 494 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~-H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~ 494 (497)
..-|..|+-.....| .|. |.. |..|...|...+..||+|..++...+++
T Consensus 28 ~~nCKsCWf~~k~LV--~C~dHYL-Cl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV--ECNNHYL-CLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSEE--ECSSCEE-EHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCee--eecchhh-HHHHHHHHHhhccCCcccCCcCCcceec
Confidence 348999998888654 487 655 9999999999999999999988766544
No 187
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.95 E-value=0.19 Score=36.28 Aligned_cols=34 Identities=29% Similarity=0.600 Sum_probs=28.9
Q ss_pred CCcccccccccCCceEEeCCC----CccchHHHHHHHhc
Q 010920 442 SSSSCVICWEAPVEGACVPCG----HMAGCMSCLSEIKA 476 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~pC~----H~~~C~~C~~~~~~ 476 (497)
....|.+|.++..+.-|+.|- |.| |..|.....+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCee-eccccHHHHH
Confidence 345999999999999998884 999 9999887765
No 188
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.41 E-value=0.29 Score=44.62 Aligned_cols=47 Identities=23% Similarity=0.639 Sum_probs=36.9
Q ss_pred CcccccccccCCceE-EeCCCCccchHHHHHHHhccC--cccccccccccc
Q 010920 443 SSSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ 490 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~~~--~~Cp~Cr~~i~~ 490 (497)
...|.+|.+-..... .-.|+|.+ -..|..+|.+.. ..||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 559999999776543 33499999 999999998643 589999987654
No 189
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.71 E-value=0.19 Score=39.07 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=24.4
Q ss_pred Cccccccccc-CCceEE--eCCCCccchHHHHHH
Q 010920 443 SSSCVICWEA-PVEGAC--VPCGHMAGCMSCLSE 473 (497)
Q Consensus 443 ~~~C~iC~~~-~~~~~~--~pC~H~~~C~~C~~~ 473 (497)
+..|.||.+. +..++. ++|+|.| |..|...
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence 4589999975 445554 8999999 9999998
No 190
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=71.69 E-value=0.6 Score=44.16 Aligned_cols=45 Identities=24% Similarity=0.558 Sum_probs=34.9
Q ss_pred CCcccccccccCCceEEe----CCCC--ccchHHHHHHHhccCccccccccc
Q 010920 442 SSSSCVICWEAPVEGACV----PCGH--MAGCMSCLSEIKAKKGDCPVCRTK 487 (497)
Q Consensus 442 ~~~~C~iC~~~~~~~~~~----pC~H--~~~C~~C~~~~~~~~~~Cp~Cr~~ 487 (497)
....|+||-..+.-.++. .=|+ .. |..|...|.-.+.+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~-Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLS-CSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEE-ETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEE-eCCCCCEEeecCcCCcCCCCC
Confidence 456999999988766554 2453 44 999999998888899999875
No 191
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=70.32 E-value=4.6 Score=29.56 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=31.1
Q ss_pred CCCCcccccccccCCceEEeCCC---CccchHHHHHHHh----------------ccCccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCG---HMAGCMSCLSEIK----------------AKKGDCPVCR 485 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~---H~~~C~~C~~~~~----------------~~~~~Cp~Cr 485 (497)
...+..|.||-....... +||+ -+| -..|..++- ...+.|+.|.
T Consensus 12 ~~~D~~C~VC~~~t~~~l-~pCRvC~Rvf-H~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESL-FPCRVCTRVF-HDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCSCCCTTTCCCCSSCC-SSCSSSSSCC-CHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCCcccCccccccccce-eccccccccc-cHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 445669999997665554 4766 556 889999982 1247899994
No 192
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.80 E-value=7.4 Score=28.81 Aligned_cols=47 Identities=28% Similarity=0.631 Sum_probs=33.1
Q ss_pred CCcccccccccCCc----eEEeC---CCCccchHHHHHHHhc-cCccccccccccc
Q 010920 442 SSSSCVICWEAPVE----GACVP---CGHMAGCMSCLSEIKA-KKGDCPVCRTKIN 489 (497)
Q Consensus 442 ~~~~C~iC~~~~~~----~~~~p---C~H~~~C~~C~~~~~~-~~~~Cp~Cr~~i~ 489 (497)
....|.||-|..-. -+|+- |+--+ |..|.+-... .+..||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPv-CrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPA-CRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCC-CHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChh-hHHHHHHHHhccCccccccCCccc
Confidence 44699999997422 13444 44444 9999988765 4568999998775
No 193
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=58.60 E-value=5.5 Score=27.67 Aligned_cols=34 Identities=29% Similarity=0.693 Sum_probs=27.2
Q ss_pred CCCCcccccccccCCceEEeCC-CCccchHHHHHHHh
Q 010920 440 DGSSSSCVICWEAPVEGACVPC-GHMAGCMSCLSEIK 475 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC-~H~~~C~~C~~~~~ 475 (497)
.++..-|+||.+. +....+.| +-.| |..|...+=
T Consensus 5 ~ee~pWC~ICneD-AtlrC~gCdgDLY-C~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED-ATLRCAGCDGDLY-CARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC-CCEEETTTTSEEE-CSSHHHHHT
T ss_pred CcCCCeeEEeCCC-CeEEecCCCCcee-hHHHHHHHc
Confidence 4566799999998 66778899 6777 999988765
No 194
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=52.75 E-value=11 Score=30.41 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=34.0
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHH-----------hccCccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEI-----------KAKKGDCPVCRTK 487 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~-----------~~~~~~Cp~Cr~~ 487 (497)
...+..|.||-+--.-...-.|-..| |..|+... ....+.|+.|+.+
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~F-c~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEE-EHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchhh-hHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 44556799999876544445788888 99999864 1235889999754
No 195
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=50.80 E-value=12 Score=40.62 Aligned_cols=53 Identities=9% Similarity=0.010 Sum_probs=46.2
Q ss_pred ccCCCCCcccccccccCCceEEeCCCC-ccchHHHHHHHhccCcccccccccccc
Q 010920 437 VKDDGSSSSCVICWEAPVEGACVPCGH-MAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 437 ~~~~~~~~~C~iC~~~~~~~~~~pC~H-~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..+..+...|+|-++...|+|.+|.|| .+ =..++++|......||+-|.++..
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~Ty-dR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNI-DRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEE-CHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345677899999999999999999985 67 899999999877899999998854
No 196
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=50.06 E-value=7.4 Score=37.39 Aligned_cols=44 Identities=25% Similarity=0.610 Sum_probs=31.8
Q ss_pred cccccccccCCceE-EeCCCCccchHHHHHHHhc----cCcccccccccc
Q 010920 444 SSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKA----KKGDCPVCRTKI 488 (497)
Q Consensus 444 ~~C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~----~~~~Cp~Cr~~i 488 (497)
..|++-..+...++ ...|.|.- |++-..-+.. ..++||+|.+.+
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCccc
Confidence 58999888887766 56899997 6555333322 358999998876
No 197
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=46.02 E-value=9.3 Score=36.59 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=32.2
Q ss_pred cccccccccCCceE-EeCCCCccchHHHHHHHhc----cCcccccccccc
Q 010920 444 SSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKA----KKGDCPVCRTKI 488 (497)
Q Consensus 444 ~~C~iC~~~~~~~~-~~pC~H~~~C~~C~~~~~~----~~~~Cp~Cr~~i 488 (497)
..|++-..+...++ ...|.|.- |++-..-+.. ..++||+|.+.+
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~Hlq-CFDl~sfL~~~~~~~~W~CPiC~k~~ 264 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQ-CFDAALYLQMNEKKPTWICPVCDKKA 264 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCC-CEEHHHHHHHHHHSCCCBCTTTCSBC
T ss_pred eeCCCccceeccCCcCCCCCCCc-cCCHHHHHHHHhhCCCeECCCCCccc
Confidence 47999888887766 56999997 6655443332 358999999877
No 198
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.29 E-value=2 Score=35.14 Aligned_cols=45 Identities=22% Similarity=0.533 Sum_probs=33.2
Q ss_pred CCcccccccccCC-----ceEEeCCCCccchHHHHHHHhc----cCccccccccc
Q 010920 442 SSSSCVICWEAPV-----EGACVPCGHMAGCMSCLSEIKA----KKGDCPVCRTK 487 (497)
Q Consensus 442 ~~~~C~iC~~~~~-----~~~~~pC~H~~~C~~C~~~~~~----~~~~Cp~Cr~~ 487 (497)
....|.+|...+. ..+..-|.|.+ |..|...... ..+.|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 4568999998772 34566899999 9999876632 23679999764
No 199
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=42.12 E-value=22 Score=29.15 Aligned_cols=46 Identities=24% Similarity=0.506 Sum_probs=35.5
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHh-----------ccCcccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIK-----------AKKGDCPVCRT 486 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~-----------~~~~~Cp~Cr~ 486 (497)
...+..|.||.+--.-...-.|-..| |..|+.... ...+.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~F-h~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEE-EHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCee-eHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 44566999999988766666888999 999998543 23588999984
No 200
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.44 E-value=3.7 Score=29.63 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=35.1
Q ss_pred CCCCcccccccccCC-----ceEEeCCCCccchHHHHHHHhccCcccccccccc
Q 010920 440 DGSSSSCVICWEAPV-----EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 488 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~-----~~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i 488 (497)
.+....|.-|...+- -.+.--|.|.+ |..|-.......+.|-+|-+..
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rV-C~~Crv~~~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLV-CRDCRIQESNGTWRCKVCSGPS 74 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEEC-CTTSEEECSTTCEEEHHHHSSC
T ss_pred CCCccchhhhCccccccccCCCcCcccChhh-cccccccCCCCCEEEeeCchhh
Confidence 455678999998653 35566899999 9999665555557888886543
No 201
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=35.17 E-value=27 Score=24.33 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=30.5
Q ss_pred CcccccccccCCceEEeCCCCccchHHHHHHHhc----cCccccccccc
Q 010920 443 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA----KKGDCPVCRTK 487 (497)
Q Consensus 443 ~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~~----~~~~Cp~Cr~~ 487 (497)
...|.||.+.-..+..--|...| ...|...-.. ..+.||.|...
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~~-H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAAF-HWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCEE-CHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCCeEEECCCCCCce-ecccCCCccCcCCCCCEECccccCC
Confidence 34799999876555555787777 8888753322 34789999753
No 202
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=34.40 E-value=4.7 Score=33.67 Aligned_cols=45 Identities=20% Similarity=0.552 Sum_probs=32.4
Q ss_pred CCcccccccccC-----CceEEeCCCCccchHHHHHHHhc-cCccccccccc
Q 010920 442 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTK 487 (497)
Q Consensus 442 ~~~~C~iC~~~~-----~~~~~~pC~H~~~C~~C~~~~~~-~~~~Cp~Cr~~ 487 (497)
....|.+|...+ .-.+..-|.|.+ |..|...... ..+.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 467999999874 345667899999 9999843322 33679999764
No 203
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=30.68 E-value=28 Score=23.70 Aligned_cols=46 Identities=24% Similarity=0.485 Sum_probs=29.2
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHHHh----ccCcccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIK----AKKGDCPVCRT 486 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~~~----~~~~~Cp~Cr~ 486 (497)
......|.||.+.-.-+..--|-..| ...|...-. .....||.|+.
T Consensus 8 ~~~~~~C~vC~~~g~ll~CD~C~~~f-H~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQGGEIILCDTCPRAY-HMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCCSSEEECSSSSCEE-EHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCCCcEEECCCCChhh-hhhccCCCCCCCCCCceECccccc
Confidence 44556899999854333333566666 777776422 23578999975
No 204
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.17 E-value=44 Score=26.28 Aligned_cols=46 Identities=11% Similarity=0.139 Sum_probs=33.6
Q ss_pred cccccccccCCc---eEEeCCCCccchHHHHHHHhccCcccccccccccc
Q 010920 444 SSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 490 (497)
Q Consensus 444 ~~C~iC~~~~~~---~~~~pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~ 490 (497)
..|..|.....+ ..+..=+..+ |..|..++...+.+|..|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~y-C~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMIL-CRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEE-CHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeee-cHHHHHHHcCCCCccccCCCCcCc
Confidence 578888777752 2344556667 999999877544589999999975
No 205
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=22.13 E-value=15 Score=25.19 Aligned_cols=47 Identities=21% Similarity=0.467 Sum_probs=26.0
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHH-H---hccCccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-I---KAKKGDCPVCRTK 487 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~-~---~~~~~~Cp~Cr~~ 487 (497)
..+...|.||.+.-.-+..--|...| ...|... + ......||.|+..
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~f-H~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSY-HIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCB-CSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHH-cccccCCCcCcCCCCccCChhhcCc
Confidence 34556899998754323233455444 4445442 1 1234679999764
No 206
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.97 E-value=63 Score=26.86 Aligned_cols=47 Identities=28% Similarity=0.612 Sum_probs=33.4
Q ss_pred CCCCcccccccccCCceEEe--CCCCccchHHHHHHHhcc----------Cccccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAK----------KGDCPVCRTK 487 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~--pC~H~~~C~~C~~~~~~~----------~~~Cp~Cr~~ 487 (497)
...+.-|.||-+-..-+..- .|-..| |..|+.++... ++.|=+|...
T Consensus 76 DG~~~yC~wC~~Gg~l~~Cdn~~C~r~F-C~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 76 DGYQSYCTICCGGREVLMCGNNNCCRCF-CVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp TSSBSSCTTTSCCSEEEECSSTTTCCEE-EHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCcceeeEecCCCeEEeeCCCCCCCch-hHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 45566999999866333333 577888 99999988752 4678888654
No 207
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.80 E-value=15 Score=24.54 Aligned_cols=46 Identities=24% Similarity=0.584 Sum_probs=25.1
Q ss_pred CCCCcccccccccCCceEEeCCCCccchHHHHHH----HhccCcccccccc
Q 010920 440 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE----IKAKKGDCPVCRT 486 (497)
Q Consensus 440 ~~~~~~C~iC~~~~~~~~~~pC~H~~~C~~C~~~----~~~~~~~Cp~Cr~ 486 (497)
..++..|.||.+.-.-+..--|...| ...|... +......||.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~-H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVY-HLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEE-CSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcce-ECccCCCCcCCCCCCceEChhhhC
Confidence 34456899999864333333555444 4445442 1123467888864
No 208
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.76 E-value=36 Score=28.83 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=17.8
Q ss_pred CCCCccchHHHHHHHhccCcccccccccccceeEe
Q 010920 460 PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL 494 (497)
Q Consensus 460 pC~H~~~C~~C~~~~~~~~~~Cp~Cr~~i~~~~~~ 494 (497)
.|||.+. ...+..||+|..+-..|.++
T Consensus 143 ~CG~i~~--------~~~p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 143 ICGYTAV--------DEAPEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp TTCCEEE--------SCCCSBCTTTCCBGGGCEEE
T ss_pred CCCCeeC--------CCCCCCCCCCCCCHHHceec
Confidence 5677762 12345899999887766654
Done!