Query 010921
Match_columns 497
No_of_seqs 343 out of 1503
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 17:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 6.2E-21 2.1E-25 181.1 15.6 120 56-183 50-186 (194)
2 4hyg_A Putative uncharacterize 99.8 2.3E-21 8E-26 190.7 6.6 149 327-489 108-281 (301)
3 3iib_A Peptidase M28; YP_92679 99.0 1.2E-09 4.1E-14 115.7 13.4 137 43-182 65-225 (444)
4 2ek8_A Aminopeptidase; metallo 98.9 5.9E-09 2E-13 109.4 14.3 89 78-170 92-181 (421)
5 3fed_A Glutamate carboxypeptid 98.6 9.6E-08 3.3E-12 106.6 9.9 93 77-171 125-267 (707)
6 3kas_A Transferrin receptor pr 98.4 4.7E-07 1.6E-11 100.1 9.4 92 78-171 107-230 (640)
7 3i6s_A Subtilisin-like proteas 98.3 8.4E-07 2.9E-11 98.3 8.4 93 79-180 257-354 (649)
8 1xf1_A C5A peptidase, SCP; hyd 98.1 1.4E-05 5E-10 91.7 11.8 92 79-181 260-352 (926)
9 1y9z_A Alkaline serine proteas 98.0 1.2E-05 4.1E-10 84.7 9.0 87 90-180 258-356 (441)
10 3vta_A Cucumisin; subtilisin-l 90.8 0.26 9E-06 54.0 6.1 72 90-174 268-342 (621)
11 2kr6_A Presenilin-1; protease, 87.7 0.61 2.1E-05 42.8 5.0 55 431-493 88-147 (176)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=181.12 Aligned_cols=120 Identities=23% Similarity=0.312 Sum_probs=99.7
Q ss_pred CcceEEeeecCCCCccccccCCceeeEEEecC---CCCCCCCCCC---C-------CCCcEEEEecCC-CCHHHHHHHHH
Q 010921 56 EDTEYVGVGARFGRTLEAKEKDASQNRLVLAD---PPDCCSKPKN---K-------LTGEAILVHRGG-CSFTAKANFAE 121 (497)
Q Consensus 56 e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~a~---p~daC~~~~~---~-------l~g~IaLV~RG~-CsF~~Ka~nAq 121 (497)
....+.+.+|+||..+|.+ +.++.++.+. |.+||++.+. . .+||||||+||+ |+|.+|++|||
T Consensus 50 ~t~~~~~e~a~FG~~~p~~---~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq 126 (194)
T 3icu_A 50 RTVWELSEEGVYGQDSPLE---PVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAY 126 (194)
T ss_dssp CEEEEEEEEEEECTTSCCS---CEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHH
T ss_pred ceeeecccccccCCCCCCC---CcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHH
Confidence 3445889999999998875 4788888764 7899998762 1 368999999999 99999999999
Q ss_pred hcCCcEEEEEecCC---cccccccCCCCCCCcccceEEEechhhhHHHHHHHhcCcEEEEEeecC
Q 010921 122 EANASAILIINNKT---ELFKMVCESNETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSVQLYSP 183 (497)
Q Consensus 122 ~aGA~avIV~n~~~---~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~G~~V~V~l~~p 183 (497)
++||+|+||||+++ ....|... ...+||+++|++++|+.|++++++|.+|++++...
T Consensus 127 ~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg 186 (194)
T 3icu_A 127 ERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVG 186 (194)
T ss_dssp HTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECC
Confidence 99999999999852 34667532 23579999999999999999999999999888643
No 2
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.83 E-value=2.3e-21 Score=190.71 Aligned_cols=149 Identities=26% Similarity=0.347 Sum_probs=101.0
Q ss_pred hhhhhhhhheeeeeecCCcchhHHHHHHHHHHHHHHHh--cccCchhhHHHHHHHHHHhhhheeeecccccccceEEEee
Q 010921 327 CPFCIAFSVVWAVYRRISFAWIGQDILGIALMITVLQI--VRVPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVA 404 (497)
Q Consensus 327 ~~~~~~~~~~w~~~~~~~~~W~l~nilgi~~~~~~i~~--~~l~~~k~~~ilL~~lf~YDif~VF~sp~~~~~svMv~VA 404 (497)
...++++++.++.+. +|+..|+.|+++|..+... +++..+ .+.+||++|++||++|||+|+ +|+++|
T Consensus 108 ~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtLA 176 (301)
T 4hyg_A 108 LIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITLA 176 (301)
T ss_dssp HHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHT
T ss_pred HHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHHH
Confidence 344566666555555 4999999999999987775 566888 799999999999999999665 999999
Q ss_pred ccCCCCCCCCCEEEEcccccC-------------CCCCceeecccchhhhHHHHHHHHHHhhhcccC--CCcchhHHHHH
Q 010921 405 RGDRSGEDGIPMLLKIPRLFD-------------PWGGYSVIGFGDIILPGLIVAFSLRYDWLMKKN--FRSGYFVWAMT 469 (497)
Q Consensus 405 ~~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~--~~~~YF~~~~~ 469 (497)
+|.- +.|+|+++++|+-.+ .+++..++|+||+++|+++++.+.+||...... ..-+ +..+++
T Consensus 177 egvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lP-algA~~ 253 (301)
T 4hyg_A 177 EGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAP-TLGAMV 253 (301)
T ss_dssp TTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCS-CHHHHH
T ss_pred Hhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccch-HHHHHH
Confidence 9964 357999999998422 136688999999999999999999999754411 1124 889999
Q ss_pred HHHHHHHHHHH-H-------HHHHhhcc
Q 010921 470 AYGLGMGKAKF-V-------KLETIIPC 489 (497)
Q Consensus 470 ~Y~~GL~~t~~-~-------aL~~i~P~ 489 (497)
||.+||.+.++ + .|-|+.+.
T Consensus 254 Gt~~Gl~vLl~~V~~grpqaGLP~LN~G 281 (301)
T 4hyg_A 254 GSLVGLAVLLYFVNKGNPQAGLPPLNGG 281 (301)
T ss_dssp HHHHHHHHHHHHHTSSSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCccchH
Confidence 99999999866 3 55555554
No 3
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.04 E-value=1.2e-09 Score=115.74 Aligned_cols=137 Identities=17% Similarity=0.134 Sum_probs=93.3
Q ss_pred eEEEEeeeeecCCCc--------ceEEeeecCCCCccccccCCceeeEEEecCCCCCCCCCC-CCCCCcEEEEecCCCC-
Q 010921 43 FVLVKVPTWVDGGED--------TEYVGVGARFGRTLEAKEKDASQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCS- 112 (497)
Q Consensus 43 f~lvkv~~wv~g~e~--------~~~~~~~A~FG~~lp~~~~~~~~~~Lv~a~p~daC~~~~-~~l~g~IaLV~RG~Cs- 112 (497)
.+-+.++.|..|.+. ..+......+++..| .++++++|+.++..++|+... .+++||||||+||.|.
T Consensus 65 ~q~f~~~~w~~~~~~~~~~~~~~~~~~~~~l~~s~~tp---~~~vta~lV~v~~~~~~~~~~~~dvkGKIVlv~~~~~~~ 141 (444)
T 3iib_A 65 KEPVTVPVWRRGIAKASILSPFPQPLVVTALGGSIATP---AQGLSATIVRFDTLQDLQNAEAGSLNDKIAFIDAKTERH 141 (444)
T ss_dssp EEEEEEEEEEEEEEEEEEEESSCEEECEEECBTCCCCC---TTCEEEEEEEESSHHHHHTSCTTTTTTCEEEECCCCCCC
T ss_pred eeeEEeccEEecceEEEEeCCCCceEEEEeccCCCCCC---CCCeEEEEEecCCHHHHhhccccccCccEEEEeCCCCCC
Confidence 344455677654332 233333333443333 346899999987666676543 5899999999999996
Q ss_pred --------HHHH----HHHHHhcCCcEEEEEecCCcccccccCC--CCCCCcccceEEEechhhhHHHHHHHhcCcEEEE
Q 010921 113 --------FTAK----ANFAEEANASAILIINNKTELFKMVCES--NETDVDIRIPAIMLPQDAGANLEKLIKNNSVVSV 178 (497)
Q Consensus 113 --------F~~K----a~nAq~aGA~avIV~n~~~~l~~m~~~~--~~~~~~i~IPvv~Is~~~G~~L~~~L~~G~~V~V 178 (497)
|..| +.+|+++||+|+|++|+..+...+.++. ...+....||++.|++++|+.|++.+++|+++++
T Consensus 142 ~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v 221 (444)
T 3iib_A 142 RDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVI 221 (444)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEE
T ss_pred cccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEE
Confidence 6777 4579999999999999864322221110 1112346899999999999999999998876666
Q ss_pred Eeec
Q 010921 179 QLYS 182 (497)
Q Consensus 179 ~l~~ 182 (497)
++..
T Consensus 222 ~l~~ 225 (444)
T 3iib_A 222 SLEL 225 (444)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 4
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.95 E-value=5.9e-09 Score=109.44 Aligned_cols=89 Identities=21% Similarity=0.267 Sum_probs=68.8
Q ss_pred ceeeEEEecCCCCCCCCCCC-CCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEecCCcccccccCCCCCCCcccceEE
Q 010921 78 ASQNRLVLADPPDCCSKPKN-KLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAI 156 (497)
Q Consensus 78 ~~~~~Lv~a~p~daC~~~~~-~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv 156 (497)
..+++++.++.. ..++.+. +++|||||++||+|+|.+|+++|+++||+|+|+||+.+...... ........||++
T Consensus 92 ~v~a~lv~~~~G-~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~---~~~~~~~~IP~~ 167 (421)
T 2ek8_A 92 DVTAELVYVGLG-TTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGT---LGGSDASFVAAV 167 (421)
T ss_dssp EEEEEEEECTTC-CTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCB---CSSCCTTCCEEE
T ss_pred CcceEEEECCCC-ChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccc---cCCCCCCCccEE
Confidence 567888876533 2233333 79999999999999999999999999999999999864432211 111135789999
Q ss_pred EechhhhHHHHHHH
Q 010921 157 MLPQDAGANLEKLI 170 (497)
Q Consensus 157 ~Is~~~G~~L~~~L 170 (497)
.+++++++.|++.+
T Consensus 168 ~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 168 GITKQEGDALAANL 181 (421)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHh
Confidence 99999999999998
No 5
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.59 E-value=9.6e-08 Score=106.57 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=68.4
Q ss_pred CceeeEEEecCCCCCCCCC--------CCCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEecCCcc-------cc--
Q 010921 77 DASQNRLVLADPPDCCSKP--------KNKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL-------FK-- 139 (497)
Q Consensus 77 ~~~~~~Lv~a~p~daC~~~--------~~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l-------~~-- 139 (497)
+.+++++|.++ .||... ..+++|||||++||+|+|.+|+++||++||+|+||||+..+. ++
T Consensus 125 G~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~ 202 (707)
T 3fed_A 125 GMPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKG 202 (707)
T ss_dssp BCCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTS
T ss_pred CceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCC
Confidence 35788999985 466321 236999999999999999999999999999999999973210 00
Q ss_pred ---------------ccc-CCCCC-----------------CCcccceEEEechhhhHHHHHHHh
Q 010921 140 ---------------MVC-ESNET-----------------DVDIRIPAIMLPQDAGANLEKLIK 171 (497)
Q Consensus 140 ---------------m~~-~~~~~-----------------~~~i~IPvv~Is~~~G~~L~~~L~ 171 (497)
+.+ ++..+ ....+||++-|++++|+.|++.+.
T Consensus 203 ~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~ 267 (707)
T 3fed_A 203 WNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLG 267 (707)
T ss_dssp SBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBC
T ss_pred ccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhc
Confidence 000 00000 013689999999999999999875
No 6
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.41 E-value=4.7e-07 Score=100.05 Aligned_cols=92 Identities=22% Similarity=0.282 Sum_probs=67.0
Q ss_pred ceeeEEEecCCCCCCCCC-C---CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEecCCcc-c-c----------cc
Q 010921 78 ASQNRLVLADPPDCCSKP-K---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTEL-F-K----------MV 141 (497)
Q Consensus 78 ~~~~~Lv~a~p~daC~~~-~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l-~-~----------m~ 141 (497)
.+++++|.++ .||... + .+++|||||++||+|+|.+|+++|+++||+|+|+||+..+. . . ..
T Consensus 107 ~v~g~lV~vg--~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~ 184 (640)
T 3kas_A 107 TVTGKLVHAN--FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLG 184 (640)
T ss_dssp EEEECEEECT--TCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSS
T ss_pred ceEEEEEEec--CCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccC
Confidence 4678898874 455321 1 27999999999999999999999999999999999985321 0 0 00
Q ss_pred cCCC----------------CCCCcccceEEEechhhhHHHHHHHh
Q 010921 142 CESN----------------ETDVDIRIPAIMLPQDAGANLEKLIK 171 (497)
Q Consensus 142 ~~~~----------------~~~~~i~IPvv~Is~~~G~~L~~~L~ 171 (497)
.++. +......||++.|++++|+.|.+.+.
T Consensus 185 ~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 185 TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 0000 00113489999999999999998764
No 7
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.31 E-value=8.4e-07 Score=98.26 Aligned_cols=93 Identities=11% Similarity=0.190 Sum_probs=76.2
Q ss_pred eeeEEEecCCCCCCCCCC---CCC--CCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEecCCcccccccCCCCCCCcccc
Q 010921 79 SQNRLVLADPPDCCSKPK---NKL--TGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRI 153 (497)
Q Consensus 79 ~~~~Lv~a~p~daC~~~~---~~l--~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~I 153 (497)
...+++.+...+.|.+.. ..+ +|||+|++||.|.+.+|..+++++||.++|++|+.++. . .....+
T Consensus 257 ~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~------~~~~~~ 327 (649)
T 3i6s_A 257 RDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVF---R------SATFPN 327 (649)
T ss_dssp EEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGGG---G------CCCCCS
T ss_pred cceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcccc---c------cccCcC
Confidence 467888887888998753 334 99999999999999999999999999999999987322 1 123578
Q ss_pred eEEEechhhhHHHHHHHhcCcEEEEEe
Q 010921 154 PAIMLPQDAGANLEKLIKNNSVVSVQL 180 (497)
Q Consensus 154 Pvv~Is~~~G~~L~~~L~~G~~V~V~l 180 (497)
|+++|++++|+.|++.+++++..++++
T Consensus 328 P~~~v~~~~g~~i~~yi~s~~~~~a~i 354 (649)
T 3i6s_A 328 PGVVVNKKEGKQVINYVKNSVTPTATI 354 (649)
T ss_dssp CEEEECHHHHHHHHHHHHTCSSCEEEE
T ss_pred CEEEEcHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999876544444
No 8
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=98.05 E-value=1.4e-05 Score=91.74 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=69.9
Q ss_pred eeeEEEecCCCCCCCCCC-CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEecCCcccccccCCCCCCCcccceEEE
Q 010921 79 SQNRLVLADPPDCCSKPK-NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIM 157 (497)
Q Consensus 79 ~~~~Lv~a~p~daC~~~~-~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~ 157 (497)
...+++.+. ++|.+.. .+++|||+|++||.|+|.+|+.+++++||.++|++|+..+...+.. .....+|+++
T Consensus 260 ~~~~lv~~~--~g~~~~~~~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~-----~~~~~iP~~~ 332 (926)
T 1xf1_A 260 KAYDYAYAN--RGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL-----PNVDQMPAAF 332 (926)
T ss_dssp CCEEEEECT--TSCSTTTTTTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC-----CCSTTCCEEE
T ss_pred ceEEEEECC--CCCCccchhhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc-----CccccccEEE
Confidence 346777653 5786543 5899999999999999999999999999999999998754222211 1235799999
Q ss_pred echhhhHHHHHHHhcCcEEEEEee
Q 010921 158 LPQDAGANLEKLIKNNSVVSVQLY 181 (497)
Q Consensus 158 Is~~~G~~L~~~L~~G~~V~V~l~ 181 (497)
|++++|+.|++ +..+++++.
T Consensus 333 i~~~~g~~l~~----~~~~ti~~~ 352 (926)
T 1xf1_A 333 ISRKDGLLLKD----NPQKTITFN 352 (926)
T ss_dssp ECHHHHHHHHH----CSSCEEEEC
T ss_pred EeHHHHHHHHh----CCceEEEec
Confidence 99999998874 445566654
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=98.00 E-value=1.2e-05 Score=84.74 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCCCCCC-----CCCCCcEEEEecCCC-----CHHHHHHHHHhcCCcEEEEEecCCcc--cccccCCCCCCCcccceEEE
Q 010921 90 DCCSKPK-----NKLTGEAILVHRGGC-----SFTAKANFAEEANASAILIINNKTEL--FKMVCESNETDVDIRIPAIM 157 (497)
Q Consensus 90 daC~~~~-----~~l~g~IaLV~RG~C-----sF~~Ka~nAq~aGA~avIV~n~~~~l--~~m~~~~~~~~~~i~IPvv~ 157 (497)
+.|.+.+ .+++|||+|++||+| .+.+|+++++++||+++|+||+.+.. ..... .+......||+++
T Consensus 258 ~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~--~~~~~~~~~p~~~ 335 (441)
T 1y9z_A 258 AECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFL--VDANSDITVPSVS 335 (441)
T ss_dssp EEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEE--ECTTCCCCSCEEE
T ss_pred hccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccc--cccccCccccEEE
Confidence 4586542 479999999999987 89999999999999999999986421 10000 0112346899999
Q ss_pred echhhhHHHHHHHhcCcEEEEEe
Q 010921 158 LPQDAGANLEKLIKNNSVVSVQL 180 (497)
Q Consensus 158 Is~~~G~~L~~~L~~G~~V~V~l 180 (497)
+++++|+.|++.+ ++++++..
T Consensus 336 v~~~~g~~l~~~~--~~~~t~~~ 356 (441)
T 1y9z_A 336 VDRATGLALKAKL--GQSTTVSN 356 (441)
T ss_dssp ECHHHHHHHHTTT--TSEEEEEE
T ss_pred EeHHHHHHHHHHh--cCCccccc
Confidence 9999999999877 45566543
No 10
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=90.81 E-value=0.26 Score=53.96 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=55.9
Q ss_pred CCCCCCC---CCCCCcEEEEecCCCCHHHHHHHHHhcCCcEEEEEecCCcccccccCCCCCCCcccceEEEechhhhHHH
Q 010921 90 DCCSKPK---NKLTGEAILVHRGGCSFTAKANFAEEANASAILIINNKTELFKMVCESNETDVDIRIPAIMLPQDAGANL 166 (497)
Q Consensus 90 daC~~~~---~~l~g~IaLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L 166 (497)
..|.+.. ..++|||++++| .+..|..+++.+||.++|++|+..+. .....+|.+.++.++|..+
T Consensus 268 ~~~~~~~~~~~~v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~----------~~~~~lP~~~v~~~~g~~i 334 (621)
T 3vta_A 268 RFCTDKSVNPNLLKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDY----------ADSYPLPSSVLDPNDLLAT 334 (621)
T ss_dssp TTTCTTCSCGGGTTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSS----------CCCCSSSEEEECHHHHHHH
T ss_pred ccccccccccccccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCc----------ccccccceEEECHHHHHHH
Confidence 4565543 368999999875 46689999999999999999986432 1235689999999999999
Q ss_pred HHHHhcCc
Q 010921 167 EKLIKNNS 174 (497)
Q Consensus 167 ~~~L~~G~ 174 (497)
++.+....
T Consensus 335 ~~~~~~~~ 342 (621)
T 3vta_A 335 LRYIYSIR 342 (621)
T ss_dssp HHHHHHHS
T ss_pred HHHHhccC
Confidence 98876543
No 11
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=87.66 E-value=0.61 Score=42.82 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=40.8
Q ss_pred eeecccchhhhHHHHHHHH--H-HhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHH--Hhhcccccc
Q 010921 431 SVIGFGDIILPGLIVAFSL--R-YDWLMKKNFRSGYFVWAMTAYGLGMGKAKFVKLE--TIIPCLYKE 493 (497)
Q Consensus 431 s~LGlGDIviPGl~i~~~~--r-fD~~~~~~~~~~YF~~~~~~Y~~GL~~t~~~aL~--~i~P~~~~~ 493 (497)
--|||||-|+=+++++-+. + +|+. =..++++|..+||++|...-.. .-.|||=++
T Consensus 88 ikLGLGDFIFYSvLVgkAa~~~~~d~~--------t~~ac~vaIL~GL~~TL~lLa~~~~aLPALPiS 147 (176)
T 2kr6_A 88 VKLGLGDFIFYSVLVGKASATASGDWN--------TTIACFVAILIGLCLTLLLLAIFKKALPALPIS 147 (176)
T ss_dssp CSSCTTTHHHHHHHHHHHHHHSCCTTT--------THHHHHHHHHHHHHHHHHHHHHHTCSCSSSSSC
T ss_pred ccccccCeeehHHHHHHHHHhhccCHH--------HHHHHHHHHHHHHHHHHHHHhhhcccCCCCcHH
Confidence 4599999999999999887 4 3552 2569999999999998765222 356666443
Done!