BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010922
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 212/405 (52%), Positives = 295/405 (72%), Gaps = 8/405 (1%)
Query: 96 YRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN-GTNFGDGFVEVLAATQTP 154
YRLIDIP+SNC+NS I+KI+VLTQFNSASLNRH++R Y N G +GFVEVLAA Q+P
Sbjct: 52 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 111
Query: 155 GESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADI 214
+WFQGTADAVRQ+ W+FE+ + IL GDHLYRMDY FIQ+H + DADI
Sbjct: 112 --ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADI 166
Query: 215 TISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPY 274
T++ + E RA+ +GL+KID GRI +FAEKP G L+AM+VDT++LG + A++ P+
Sbjct: 167 TVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPF 226
Query: 275 VASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKS 333
+ASMG+YV KDV+ LLR ++P +NDFGSE+IP A + VQAY++ YWEDIGTI++
Sbjct: 227 IASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEA 286
Query: 334 FYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEH 392
FY AN+ +TK+ P F FYD P YT PR+LPP+K+ + + D++I GC ++ C + H
Sbjct: 287 FYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHH 346
Query: 393 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 452
S+VG RS + G ++D++++GADYY+T+++ L A+G VPIG+G+N I+ IIDKN
Sbjct: 347 SVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNA 406
Query: 453 KIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497
+IG +V I+NKD+VQEA R G++I+SGI +++ A I G++I
Sbjct: 407 RIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 187/398 (46%), Gaps = 60/398 (15%)
Query: 94 GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 153
G R+ID +SN +NSGI +I V TQ+ + SL RH+ R + + F ++L A+Q
Sbjct: 42 GKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFRPERNESF-DILPASQR 100
Query: 154 PGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDAD 213
E+ W++GTADAV Q + E E IL GDH+Y+ DY +Q HVD AD
Sbjct: 101 VSET--QWYEGTADAVYQNIDIIEPYAP---EYXVILAGDHIYKXDYEYXLQQHVDSGAD 155
Query: 214 ITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCP 273
+TI C V A+ +G+ ++ I F EKP A+ + + GF+
Sbjct: 156 VTIGCLEVPRXEATGFGVXHVNEKDEIIDFIEKP--ADPPGIPGNE---GFA-------- 202
Query: 274 YVASMGVYVFKKDVLFKLLRWRY--PTSN-DFGSEIIPAAIMEHDVQAYIFRD------- 323
+AS G+YVF L + +R PTS+ DFG +IIP + A+ F D
Sbjct: 203 -LASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDF 261
Query: 324 ----YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI---DNCRIKD 376
YW D+GTI ++++AN+ LT P YD P +T PP K D R
Sbjct: 262 EHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGS 321
Query: 377 A---IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 433
A ++S C + + S++ R + L++ V+L +
Sbjct: 322 AVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS------------------ 363
Query: 434 PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADR 471
+ +GR+ ++ N +ID V I + +IV +D +A R
Sbjct: 364 -VKIGRHAQLSNVVIDHGVVI-PEGLIVGEDPELDAKR 399
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 23/152 (15%)
Query: 98 LIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGES 157
+I P+S + +GI I +++ L R + G+G+ FG F + P
Sbjct: 36 MIYYPLSVLMLAGIRDILIISTPRDLPLYRDL----LGDGSQFGVRFS--YRVQEEP--- 86
Query: 158 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITI 216
+G ADA D+K VA++ GD++ Y + + ++ + I
Sbjct: 87 -----RGIADAFIVGKDFIGDSK------VALVLGDNVFYGHRFSEILRRAASLEDGAVI 135
Query: 217 SCAAVGESRASDYGLVKIDNMGRIAQFAEKPS 248
V + R +G+V+ D+ GR+ EKPS
Sbjct: 136 FGYYVRDPRP--FGVVEFDSEGRVISIEEKPS 165
>pdb|2OZP|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Ttha1904) From Thermus Thermophilus
Length = 345
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 349 HFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE 387
HF P T+ +F+PP K++ I + HG F RE
Sbjct: 46 HFVHPNLRGRTNLKFVPPEKLEPADILVLALPHGVFARE 84
>pdb|1WQ6|A Chain A, The Tetramer Structure Of The Nervy Homolgy Two (Nhr2)
Domain Of Aml1- Eto Is Critical For Aml1-Eto's Activity
pdb|1WQ6|B Chain B, The Tetramer Structure Of The Nervy Homolgy Two (Nhr2)
Domain Of Aml1- Eto Is Critical For Aml1-Eto's Activity
Length = 72
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 445 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR 479
NCI D K + + ++ + QEADR EL ++IR
Sbjct: 31 NCIXDXVEKTRRSLTVLRR--CQEADREELNYWIR 63
>pdb|1BCM|A Chain A, Bacteriophage Mu Transposase Core Domain With 2 Monomers
Per Asymmetric Unit
pdb|1BCM|B Chain B, Bacteriophage Mu Transposase Core Domain With 2 Monomers
Per Asymmetric Unit
pdb|1BCO|A Chain A, Bacteriophage Mu Transposase Core Domain
Length = 327
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 161 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSH-VDRDADITI 216
WF G D +R TW ++D K R I +++ R+ +MD + + + D ITI
Sbjct: 32 WFNG--DVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITI 88
>pdb|4FCY|A Chain A, Crystal Structure Of The Bacteriophage Mu Transpososome
pdb|4FCY|B Chain B, Crystal Structure Of The Bacteriophage Mu Transpososome
Length = 529
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 161 WFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSH-VDRDADITI 216
WF G D +R TW ++D K R I +++ R+ +MD + + + D ITI
Sbjct: 203 WFNG--DVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYGIPEDFHITI 259
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 98 LIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGES 157
+I P+S + +GI I +++ + + G+G+ +G
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQL----LGDGSQWGLNL------------- 78
Query: 158 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITI 216
+ Q + D + Q + E+ + + A++ GD++ Y D +++ V++++ T+
Sbjct: 79 -QYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKLMEAAVNKESGATV 135
Query: 217 SCAAVGESRASDYGLVKIDNMGRIAQFAEKP 247
V + YG+V+ D G EKP
Sbjct: 136 FAYHVNDPER--YGVVEFDQAGTAVSLEEKP 164
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 98 LIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGES 157
+I P+S + +GI I +++ + + G+G+ +G
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQL----LGDGSQWGLNL------------- 78
Query: 158 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITI 216
+ Q + D + Q + E+ + + A++ GD++ Y D +++ V++++ T+
Sbjct: 79 -QYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKLMEAAVNKESGATV 135
Query: 217 SCAAVGESRASDYGLVKIDNMGRIAQFAEKP 247
V + YG+V+ D G EKP
Sbjct: 136 FAYHVNDPER--YGVVEFDQAGTAVSLEEKP 164
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 98 LIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGES 157
+I P+S + +GI I +++ + + G+G+ +G
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQL----LGDGSQWGLNL------------- 78
Query: 158 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITI 216
+ Q + D + Q + E+ + + A++ GD++ Y D +++ V++++ T+
Sbjct: 79 -QYKVQPSPDGLAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKLMEAAVNKESGATV 135
Query: 217 SCAAVGESRASDYGLVKIDNMGRIAQFAEKP 247
V + YG+V+ D G EKP
Sbjct: 136 FAYHVNDPER--YGVVEFDQKGTAVSLEEKP 164
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 23/151 (15%)
Query: 98 LIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGES 157
+I P+S + +GI I +++ + + G+G+ +G
Sbjct: 36 MIYYPLSTLMLAGIRDILIISTPQDTPRFQQL----LGDGSQWGLNL------------- 78
Query: 158 GKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITI 216
+ Q + D Q + E+ + + A++ GD++ Y D +++ V++++ T+
Sbjct: 79 -QYKVQPSPDGTAQAFIIGEEFIGHD--DCALVLGDNIFYGHDLPKLMEAAVNKESGATV 135
Query: 217 SCAAVGESRASDYGLVKIDNMGRIAQFAEKP 247
V + YG+V+ D G EKP
Sbjct: 136 FAYHVNDPER--YGVVEFDQAGTAVSLEEKP 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,615,008
Number of Sequences: 62578
Number of extensions: 615704
Number of successful extensions: 1284
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 20
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)