Query 010922
Match_columns 497
No_of_seqs 225 out of 2463
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 5.5E-76 1.2E-80 591.4 35.9 384 63-496 4-392 (393)
2 KOG1322 GDP-mannose pyrophosph 100.0 1.4E-74 3.1E-79 561.6 31.5 361 63-492 8-371 (371)
3 PLN02241 glucose-1-phosphate a 100.0 1.8E-67 3.9E-72 558.2 45.9 434 62-497 1-436 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 2.6E-64 5.7E-69 532.8 44.7 427 63-497 2-429 (429)
5 PRK00844 glgC glucose-1-phosph 100.0 9E-58 2E-62 480.3 41.8 384 62-491 3-407 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 2.4E-57 5.3E-62 473.0 41.4 369 63-497 2-379 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 1.5E-56 3.2E-61 473.2 42.6 388 63-494 14-422 (425)
8 TIGR02091 glgC glucose-1-phosp 100.0 2.2E-51 4.7E-56 425.3 38.5 356 67-462 1-361 (361)
9 TIGR02092 glgD glucose-1-phosp 100.0 2.1E-51 4.6E-56 426.8 36.9 349 64-463 2-356 (369)
10 COG1208 GCD1 Nucleoside-diphos 100.0 1.2E-50 2.7E-55 418.0 37.7 352 64-497 1-357 (358)
11 TIGR01208 rmlA_long glucose-1- 100.0 1.4E-46 3.1E-51 388.3 38.4 327 66-462 1-339 (353)
12 PRK14355 glmU bifunctional N-a 100.0 1.3E-43 2.8E-48 378.6 35.6 389 63-497 2-430 (459)
13 PRK14352 glmU bifunctional N-a 100.0 1.2E-43 2.6E-48 381.0 35.2 389 61-497 1-432 (482)
14 COG1207 GlmU N-acetylglucosami 100.0 1.4E-43 3E-48 356.6 29.9 385 64-497 2-430 (460)
15 PRK14358 glmU bifunctional N-a 100.0 9.7E-43 2.1E-47 373.4 32.4 384 63-497 6-432 (481)
16 PRK14359 glmU bifunctional N-a 100.0 3.8E-42 8.3E-47 364.1 34.0 373 64-497 2-400 (430)
17 TIGR01173 glmU UDP-N-acetylglu 100.0 2.4E-42 5.2E-47 367.6 32.5 380 65-497 1-423 (451)
18 PRK09451 glmU bifunctional N-a 100.0 2.9E-42 6.4E-47 367.9 30.7 380 64-497 5-427 (456)
19 KOG1460 GDP-mannose pyrophosph 100.0 1.4E-41 3.1E-46 325.9 21.2 328 64-462 2-357 (407)
20 PRK14356 glmU bifunctional N-a 100.0 5.8E-40 1.3E-44 350.1 36.1 384 64-497 5-431 (456)
21 PRK14357 glmU bifunctional N-a 100.0 3.2E-40 7E-45 351.3 32.9 375 65-497 1-416 (448)
22 PRK14353 glmU bifunctional N-a 100.0 5.4E-40 1.2E-44 349.4 34.4 381 62-497 3-413 (446)
23 PRK14354 glmU bifunctional N-a 100.0 8.9E-40 1.9E-44 348.8 32.5 382 64-497 2-426 (458)
24 KOG1461 Translation initiation 100.0 1.3E-39 2.8E-44 339.4 31.2 377 62-497 22-423 (673)
25 PRK14360 glmU bifunctional N-a 100.0 6.1E-39 1.3E-43 341.6 33.1 381 65-497 2-423 (450)
26 COG1209 RfbA dTDP-glucose pyro 100.0 6.1E-39 1.3E-43 307.7 21.8 233 65-343 1-237 (286)
27 TIGR01105 galF UTP-glucose-1-p 100.0 6.8E-38 1.5E-42 315.3 26.5 241 64-342 3-277 (297)
28 PF00483 NTP_transferase: Nucl 100.0 8.5E-38 1.8E-42 306.3 25.6 240 66-343 1-247 (248)
29 KOG1462 Translation initiation 100.0 3.6E-38 7.7E-43 312.7 22.1 350 61-463 6-403 (433)
30 PRK10122 GalU regulator GalF; 100.0 7.2E-37 1.6E-41 308.3 27.1 244 63-344 2-280 (297)
31 cd06428 M1P_guanylylT_A_like_N 100.0 6.6E-37 1.4E-41 302.7 25.6 235 67-341 1-257 (257)
32 cd06425 M1P_guanylylT_B_like_N 100.0 1.8E-36 3.9E-41 295.1 26.7 232 65-342 1-233 (233)
33 cd02538 G1P_TT_short G1P_TT_sh 100.0 2.1E-35 4.5E-40 288.9 25.7 231 65-341 1-237 (240)
34 PRK15480 glucose-1-phosphate t 100.0 3.4E-35 7.4E-40 295.0 27.4 234 63-342 2-241 (292)
35 TIGR01207 rmlA glucose-1-phosp 100.0 3.8E-35 8.2E-40 294.2 25.1 231 66-342 1-237 (286)
36 cd02541 UGPase_prokaryotic Pro 100.0 5.1E-35 1.1E-39 290.6 25.3 240 65-342 1-265 (267)
37 TIGR01099 galU UTP-glucose-1-p 100.0 1.4E-35 3.1E-40 293.3 20.6 239 65-337 1-260 (260)
38 PRK13389 UTP--glucose-1-phosph 100.0 1.3E-34 2.8E-39 292.4 27.3 245 61-342 5-280 (302)
39 TIGR02623 G1P_cyt_trans glucos 100.0 1.2E-34 2.6E-39 286.3 25.5 233 66-345 1-248 (254)
40 cd04189 G1P_TT_long G1P_TT_lon 100.0 3.1E-33 6.7E-38 272.3 27.1 232 65-343 1-235 (236)
41 cd06422 NTP_transferase_like_1 100.0 7.6E-34 1.7E-38 274.2 22.2 219 66-337 1-221 (221)
42 cd02524 G1P_cytidylyltransfera 100.0 2.8E-33 6E-38 276.2 25.8 241 67-344 1-248 (253)
43 cd06915 NTP_transferase_WcbM_l 100.0 4.3E-32 9.4E-37 260.9 23.9 223 67-338 1-223 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 7.4E-32 1.6E-36 258.4 24.4 217 67-329 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 2.3E-31 5E-36 256.2 25.2 219 67-338 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 2.5E-30 5.5E-35 248.5 18.5 248 63-346 3-274 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 3.8E-30 8.3E-35 248.1 18.3 204 65-288 1-217 (217)
48 cd02508 ADP_Glucose_PP ADP-glu 100.0 3E-29 6.5E-34 238.8 21.3 195 67-328 1-200 (200)
49 cd02523 PC_cytidylyltransferas 100.0 2.8E-29 6.1E-34 243.6 20.8 222 67-338 1-229 (229)
50 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 6.8E-29 1.5E-33 241.1 22.1 222 67-334 1-230 (231)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 3.7E-27 7.9E-32 235.4 18.2 233 65-333 1-273 (274)
52 cd02507 eIF-2B_gamma_N_like Th 99.9 1.5E-26 3.3E-31 223.1 16.6 204 65-288 1-216 (216)
53 cd02540 GT2_GlmU_N_bac N-termi 99.9 3.3E-25 7.1E-30 214.6 21.7 221 67-334 1-229 (229)
54 cd04198 eIF-2B_gamma_N The N-t 99.9 5.4E-25 1.2E-29 211.9 15.0 201 65-288 1-214 (214)
55 TIGR01479 GMP_PMI mannose-1-ph 99.9 4.4E-24 9.5E-29 228.0 21.0 240 65-338 1-281 (468)
56 PRK05450 3-deoxy-manno-octulos 99.9 1E-21 2.3E-26 192.5 22.9 233 65-341 3-244 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 9E-22 2E-26 192.2 21.9 226 65-339 2-238 (239)
58 COG1213 Predicted sugar nucleo 99.9 6.6E-22 1.4E-26 187.3 18.2 223 63-343 2-230 (239)
59 PRK13368 3-deoxy-manno-octulos 99.8 1E-19 2.2E-24 177.6 21.3 224 65-340 3-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.8 1.5E-19 3.2E-24 192.1 18.6 239 65-338 6-290 (478)
61 COG0836 {ManC} Mannose-1-phosp 99.8 1.9E-19 4.1E-24 177.3 17.7 241 64-338 1-282 (333)
62 COG4750 LicC CTP:phosphocholin 99.8 2.4E-18 5.1E-23 156.9 15.2 219 65-342 1-226 (231)
63 PLN02917 CMP-KDO synthetase 99.7 9.2E-15 2E-19 147.2 22.5 233 64-343 47-289 (293)
64 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 4.3E-15 9.3E-20 144.5 10.1 132 300-461 28-176 (231)
65 TIGR00453 ispD 2-C-methyl-D-er 99.5 6.5E-13 1.4E-17 127.8 17.9 210 67-340 2-216 (217)
66 cd04651 LbH_G1P_AT_C Glucose-1 99.5 2E-13 4.2E-18 116.6 12.1 102 366-491 1-104 (104)
67 PRK00155 ispD 2-C-methyl-D-ery 99.5 1E-12 2.2E-17 127.4 18.6 216 64-342 3-223 (227)
68 cd02516 CDP-ME_synthetase CDP- 99.5 9.4E-13 2E-17 126.5 16.8 212 66-336 2-217 (218)
69 TIGR03310 matur_ygfJ molybdenu 99.5 1.9E-12 4.1E-17 121.4 17.0 118 67-213 2-121 (188)
70 TIGR00454 conserved hypothetic 99.5 6.6E-13 1.4E-17 124.8 12.9 125 65-220 1-127 (183)
71 TIGR00466 kdsB 3-deoxy-D-manno 99.5 7.7E-12 1.7E-16 122.5 20.7 229 67-334 2-237 (238)
72 PRK09382 ispDF bifunctional 2- 99.4 4.4E-12 9.5E-17 131.9 19.4 206 64-343 5-214 (378)
73 PF12804 NTP_transf_3: MobA-li 99.4 6.9E-13 1.5E-17 121.2 12.0 121 67-219 1-123 (160)
74 cd02513 CMP-NeuAc_Synthase CMP 99.4 6.7E-12 1.4E-16 120.9 19.0 215 65-339 2-221 (223)
75 cd05636 LbH_G1P_TT_C_like Puta 99.4 1.3E-12 2.7E-17 120.5 12.8 126 352-497 9-162 (163)
76 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 8.6E-13 1.9E-17 124.9 11.7 142 353-497 26-177 (193)
77 PRK13385 2-C-methyl-D-erythrit 99.4 2.9E-11 6.4E-16 117.6 18.0 217 65-342 3-224 (230)
78 TIGR01853 lipid_A_lpxD UDP-3-O 99.3 1E-11 2.3E-16 126.8 13.6 62 436-497 219-286 (324)
79 cd04182 GT_2_like_f GT_2_like_ 99.3 1E-11 2.2E-16 115.7 12.5 119 65-212 1-121 (186)
80 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 3.6E-11 7.8E-16 120.2 15.3 169 328-497 78-287 (338)
81 cd02503 MobA MobA catalyzes th 99.3 4.1E-11 8.8E-16 111.9 14.7 107 65-207 1-109 (181)
82 PRK05289 UDP-N-acetylglucosami 99.3 1.9E-11 4.1E-16 121.4 12.0 145 351-497 5-174 (262)
83 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.3 5.6E-11 1.2E-15 117.6 13.5 63 435-497 103-171 (254)
84 PRK00317 mobA molybdopterin-gu 99.3 1.9E-10 4.1E-15 108.8 16.5 112 63-208 2-115 (193)
85 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 3.7E-11 8.1E-16 97.5 9.7 65 379-462 2-67 (81)
86 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 7.9E-11 1.7E-15 121.5 14.3 62 435-496 226-293 (343)
87 PRK12461 UDP-N-acetylglucosami 99.2 1.4E-10 3E-15 114.6 13.9 62 435-496 102-169 (255)
88 TIGR02287 PaaY phenylacetic ac 99.2 1E-10 2.2E-15 110.7 12.2 74 376-468 26-109 (192)
89 PLN02728 2-C-methyl-D-erythrit 99.2 7.1E-10 1.5E-14 109.4 18.3 218 62-342 22-245 (252)
90 COG0663 PaaY Carbonic anhydras 99.2 1.1E-10 2.3E-15 107.1 11.2 91 355-464 12-108 (176)
91 TIGR01852 lipid_A_lpxA acyl-[a 99.2 1.2E-10 2.5E-15 115.3 12.1 63 435-497 102-170 (254)
92 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1E-10 2.2E-15 95.0 9.6 77 363-458 2-80 (81)
93 PLN02296 carbonate dehydratase 99.2 9.5E-11 2.1E-15 116.3 11.1 120 350-496 48-180 (269)
94 cd03353 LbH_GlmU_C N-acetyl-gl 99.2 1.3E-10 2.8E-15 110.0 11.4 82 360-460 15-100 (193)
95 TIGR02665 molyb_mobA molybdopt 99.2 5.6E-10 1.2E-14 104.6 15.4 113 65-209 1-115 (186)
96 COG2266 GTP:adenosylcobinamide 99.2 1.9E-10 4.1E-15 104.8 11.5 110 65-208 1-112 (177)
97 PRK13627 carnitine operon prot 99.2 2.3E-10 4.9E-15 108.7 12.3 84 376-478 28-121 (196)
98 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.2 2.2E-10 4.7E-15 113.4 12.6 16 393-408 48-63 (254)
99 TIGR03584 PseF pseudaminic aci 99.2 3.9E-09 8.5E-14 102.4 20.6 214 67-340 2-219 (222)
100 cd03356 LbH_G1P_AT_C_like Left 99.2 2.1E-10 4.6E-15 92.4 9.9 65 379-462 2-67 (79)
101 COG1044 LpxD UDP-3-O-[3-hydrox 99.2 2.1E-10 4.6E-15 114.7 11.2 49 446-497 203-251 (338)
102 cd04745 LbH_paaY_like paaY-lik 99.1 4.9E-10 1.1E-14 102.5 12.6 84 376-478 18-111 (155)
103 PLN02472 uncharacterized prote 99.1 2.1E-10 4.5E-15 112.4 10.0 110 338-467 43-165 (246)
104 COG2068 Uncharacterized MobA-r 99.1 3.5E-09 7.5E-14 99.2 17.4 190 62-342 3-198 (199)
105 TIGR01173 glmU UDP-N-acetylglu 99.1 1.5E-10 3.3E-15 123.4 9.0 41 373-413 310-352 (451)
106 cd05787 LbH_eIF2B_epsilon eIF- 99.1 4.2E-10 9E-15 90.4 9.4 65 379-462 2-67 (79)
107 cd04646 LbH_Dynactin_6 Dynacti 99.1 1.2E-09 2.5E-14 101.1 13.0 106 376-496 17-127 (164)
108 PRK02726 molybdopterin-guanine 99.1 4.2E-09 9.1E-14 100.4 17.3 113 61-207 4-118 (200)
109 PRK14358 glmU bifunctional N-a 99.1 5.9E-10 1.3E-14 120.2 12.4 116 377-496 289-413 (481)
110 PRK14356 glmU bifunctional N-a 99.1 4.2E-10 9.1E-15 120.4 11.1 82 362-462 271-356 (456)
111 cd03352 LbH_LpxD UDP-3-O-acyl- 99.1 9.5E-10 2.1E-14 105.0 12.3 58 351-408 10-71 (205)
112 COG1207 GlmU N-acetylglucosami 99.1 3.8E-10 8.2E-15 115.4 9.5 125 350-496 257-386 (460)
113 cd05636 LbH_G1P_TT_C_like Puta 99.1 7.3E-10 1.6E-14 102.1 10.6 94 351-463 20-147 (163)
114 cd04651 LbH_G1P_AT_C Glucose-1 99.1 8.5E-10 1.8E-14 94.1 9.6 60 378-462 3-62 (104)
115 PRK12461 UDP-N-acetylglucosami 99.1 9.9E-10 2.1E-14 108.5 11.4 140 352-497 3-152 (255)
116 PRK05289 UDP-N-acetylglucosami 99.1 1.2E-09 2.5E-14 108.6 11.9 59 355-413 3-65 (262)
117 TIGR01853 lipid_A_lpxD UDP-3-O 99.1 1.2E-09 2.7E-14 111.6 12.0 153 324-497 66-244 (324)
118 TIGR03308 phn_thr-fam phosphon 99.0 1E-09 2.2E-14 105.0 10.6 10 486-495 130-139 (204)
119 cd03356 LbH_G1P_AT_C_like Left 99.0 1.4E-09 3.1E-14 87.5 9.4 75 363-456 2-79 (79)
120 PRK00560 molybdopterin-guanine 99.0 1E-08 2.2E-13 97.5 16.5 102 61-200 5-108 (196)
121 PRK14489 putative bifunctional 99.0 1.1E-08 2.4E-13 106.4 17.6 119 63-213 4-124 (366)
122 cd04650 LbH_FBP Ferripyochelin 99.0 5.1E-09 1.1E-13 95.7 13.3 84 376-478 18-111 (154)
123 PRK14357 glmU bifunctional N-a 99.0 1.1E-09 2.4E-14 116.9 10.2 65 376-460 273-339 (448)
124 KOG1461 Translation initiation 99.0 6.6E-10 1.4E-14 117.9 8.1 94 354-466 327-423 (673)
125 cd05824 LbH_M1P_guanylylT_C Ma 99.0 2.5E-09 5.3E-14 86.6 9.7 63 377-462 6-68 (80)
126 cd04645 LbH_gamma_CA_like Gamm 99.0 9.1E-09 2E-13 93.8 13.6 74 376-468 17-100 (153)
127 PRK11830 dapD 2,3,4,5-tetrahyd 99.0 3.9E-09 8.4E-14 104.5 11.8 17 445-461 194-210 (272)
128 PRK09451 glmU bifunctional N-a 99.0 2.1E-09 4.5E-14 115.2 10.7 132 362-497 267-409 (456)
129 TIGR01852 lipid_A_lpxA acyl-[a 99.0 5.3E-09 1.1E-13 103.5 12.6 122 352-496 8-151 (254)
130 cd02518 GT2_SpsF SpsF is a gly 99.0 3.2E-08 6.9E-13 96.3 17.6 115 67-215 2-121 (233)
131 cd00710 LbH_gamma_CA Gamma car 99.0 6.8E-09 1.5E-13 96.2 11.9 84 392-496 42-130 (167)
132 TIGR03202 pucB xanthine dehydr 98.9 9.4E-09 2E-13 96.9 12.9 121 65-209 1-123 (190)
133 cd03352 LbH_LpxD UDP-3-O-acyl- 98.9 5.9E-09 1.3E-13 99.5 11.5 63 352-414 5-71 (205)
134 PRK00892 lpxD UDP-3-O-[3-hydro 98.9 7.5E-09 1.6E-13 106.9 12.8 150 327-497 76-252 (343)
135 cd03360 LbH_AT_putative Putati 98.9 5.8E-09 1.2E-13 97.4 10.7 28 435-462 139-167 (197)
136 PRK14360 glmU bifunctional N-a 98.9 3.5E-09 7.6E-14 113.1 10.3 67 376-462 280-348 (450)
137 cd04745 LbH_paaY_like paaY-lik 98.9 1.2E-08 2.6E-13 93.3 12.1 95 350-463 8-114 (155)
138 TIGR03308 phn_thr-fam phosphon 98.9 9.8E-09 2.1E-13 98.2 11.6 59 350-409 10-70 (204)
139 cd03358 LbH_WxcM_N_like WcxM-l 98.9 5.9E-09 1.3E-13 90.5 9.2 68 376-463 16-85 (119)
140 PRK14355 glmU bifunctional N-a 98.9 5.8E-09 1.3E-13 111.8 10.9 73 372-467 269-342 (459)
141 PRK14354 glmU bifunctional N-a 98.9 4.1E-09 8.8E-14 112.9 9.6 65 376-460 283-349 (458)
142 KOG1462 Translation initiation 98.9 3.5E-09 7.6E-14 106.7 8.1 88 356-462 330-419 (433)
143 TIGR02287 PaaY phenylacetic ac 98.9 1.4E-08 3E-13 96.2 11.6 95 350-463 16-122 (192)
144 TIGR03570 NeuD_NnaD sugar O-ac 98.9 2.8E-08 6E-13 93.8 13.6 22 322-343 60-81 (201)
145 cd05787 LbH_eIF2B_epsilon eIF- 98.9 1.1E-08 2.4E-13 82.0 9.2 75 363-456 2-79 (79)
146 PRK14352 glmU bifunctional N-a 98.9 5.7E-09 1.2E-13 112.6 9.7 108 374-484 320-432 (482)
147 PRK14353 glmU bifunctional N-a 98.9 6.6E-09 1.4E-13 110.9 10.0 122 353-477 279-412 (446)
148 PF01128 IspD: 2-C-methyl-D-er 98.9 1.8E-07 3.9E-12 90.4 18.8 214 65-341 1-219 (221)
149 TIGR00965 dapD 2,3,4,5-tetrahy 98.9 1.4E-08 3.1E-13 99.8 11.2 34 435-468 180-214 (269)
150 PLN02296 carbonate dehydratase 98.9 3.2E-08 6.9E-13 98.3 13.5 95 350-463 60-172 (269)
151 cd03350 LbH_THP_succinylT 2,3, 98.9 2.2E-08 4.7E-13 89.9 11.2 35 435-469 82-117 (139)
152 cd04180 UGPase_euk_like Eukary 98.8 7.5E-10 1.6E-14 110.1 1.5 62 66-131 2-74 (266)
153 cd05824 LbH_M1P_guanylylT_C Ma 98.8 2.3E-08 4.9E-13 80.9 9.8 74 364-456 3-80 (80)
154 cd00710 LbH_gamma_CA Gamma car 98.8 2.4E-08 5.3E-13 92.5 11.1 110 350-478 10-131 (167)
155 COG1211 IspD 4-diphosphocytidy 98.8 4.8E-07 1E-11 87.5 20.3 219 63-342 3-227 (230)
156 COG1043 LpxA Acyl-[acyl carrie 98.8 2.7E-08 5.8E-13 94.8 11.0 62 435-496 107-174 (260)
157 cd04193 UDPGlcNAc_PPase UDPGlc 98.8 1.8E-07 3.8E-12 95.6 17.7 212 61-293 12-256 (323)
158 cd04650 LbH_FBP Ferripyochelin 98.8 7.4E-08 1.6E-12 88.1 12.4 96 349-463 7-114 (154)
159 PLN02472 uncharacterized prote 98.8 6.9E-08 1.5E-12 94.7 12.1 94 350-462 67-178 (246)
160 PRK14490 putative bifunctional 98.8 2.8E-07 6.1E-12 96.2 17.4 113 58-205 168-282 (369)
161 PRK14359 glmU bifunctional N-a 98.8 4.1E-08 8.8E-13 104.2 11.1 110 362-493 284-402 (430)
162 cd04646 LbH_Dynactin_6 Dynacti 98.8 8.9E-08 1.9E-12 88.5 12.0 95 350-463 7-119 (164)
163 PRK13627 carnitine operon prot 98.7 4.3E-08 9.4E-13 93.1 9.9 68 377-463 56-124 (196)
164 cd03359 LbH_Dynactin_5 Dynacti 98.7 7.1E-08 1.5E-12 88.8 11.1 87 376-469 27-113 (161)
165 cd04645 LbH_gamma_CA_like Gamm 98.7 8.9E-08 1.9E-12 87.3 10.8 94 350-462 7-112 (153)
166 cd05635 LbH_unknown Uncharacte 98.7 6.4E-08 1.4E-12 82.1 8.8 65 377-462 30-96 (101)
167 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.7 9.2E-08 2E-12 93.2 10.8 94 351-462 89-195 (231)
168 cd03350 LbH_THP_succinylT 2,3, 98.7 1.1E-07 2.4E-12 85.3 10.0 29 435-463 76-105 (139)
169 COG0663 PaaY Carbonic anhydras 98.7 1E-07 2.2E-12 87.6 9.8 95 350-463 19-125 (176)
170 TIGR00965 dapD 2,3,4,5-tetrahy 98.7 2.5E-07 5.3E-12 91.1 12.4 37 445-481 173-209 (269)
171 PRK11830 dapD 2,3,4,5-tetrahyd 98.6 3.8E-07 8.2E-12 90.4 13.0 36 446-481 177-212 (272)
172 PRK05293 glgC glucose-1-phosph 98.6 8.2E-08 1.8E-12 100.4 8.8 90 351-461 285-380 (380)
173 cd03360 LbH_AT_putative Putati 98.6 7.2E-07 1.6E-11 83.2 13.8 9 323-331 58-66 (197)
174 PRK14500 putative bifunctional 98.6 6.7E-07 1.5E-11 92.1 14.5 109 64-207 160-270 (346)
175 PLN02694 serine O-acetyltransf 98.6 1.4E-07 3E-12 93.7 8.9 79 377-462 167-247 (294)
176 COG1043 LpxA Acyl-[acyl carrie 98.6 1.4E-07 3.1E-12 89.8 8.3 61 435-495 82-155 (260)
177 COG1212 KdsB CMP-2-keto-3-deox 98.6 6.7E-06 1.4E-10 78.1 18.7 232 66-343 5-244 (247)
178 TIGR03570 NeuD_NnaD sugar O-ac 98.6 4.9E-07 1.1E-11 85.2 11.4 26 435-460 160-186 (201)
179 PRK11132 cysE serine acetyltra 98.5 7.1E-08 1.5E-12 95.6 5.1 80 377-462 148-228 (273)
180 PRK00725 glgC glucose-1-phosph 98.5 1.9E-07 4E-12 99.3 8.4 55 388-462 323-377 (425)
181 TIGR02092 glgD glucose-1-phosp 98.5 2.6E-07 5.6E-12 96.3 9.3 54 388-462 285-338 (369)
182 COG0448 GlgC ADP-glucose pyrop 98.5 2.2E-07 4.8E-12 95.1 8.5 62 380-462 283-345 (393)
183 TIGR02091 glgC glucose-1-phosp 98.5 2.8E-07 6E-12 95.7 9.4 63 380-462 281-344 (361)
184 cd05635 LbH_unknown Uncharacte 98.5 7.9E-07 1.7E-11 75.4 10.3 77 377-497 18-94 (101)
185 COG0746 MobA Molybdopterin-gua 98.5 5.3E-07 1.2E-11 85.4 10.0 101 63-200 3-104 (192)
186 COG2171 DapD Tetrahydrodipicol 98.5 4.4E-07 9.5E-12 88.2 9.1 33 433-465 181-220 (271)
187 PRK00844 glgC glucose-1-phosph 98.5 3.5E-07 7.6E-12 96.7 9.2 56 360-415 315-371 (407)
188 cd04649 LbH_THP_succinylT_puta 98.5 1.2E-06 2.6E-11 78.5 11.0 65 392-467 47-111 (147)
189 KOG1460 GDP-mannose pyrophosph 98.5 3.2E-07 7E-12 89.8 7.8 65 350-414 290-362 (407)
190 TIGR03536 DapD_gpp 2,3,4,5-tet 98.5 1.1E-06 2.4E-11 87.5 11.5 16 392-407 224-239 (341)
191 PTZ00339 UDP-N-acetylglucosami 98.5 1.1E-05 2.3E-10 86.3 19.7 220 57-293 99-351 (482)
192 PLN02474 UTP--glucose-1-phosph 98.5 7.7E-05 1.7E-09 79.3 25.8 346 63-452 78-467 (469)
193 cd03359 LbH_Dynactin_5 Dynacti 98.5 2.2E-06 4.7E-11 78.9 12.5 68 377-463 43-125 (161)
194 PRK11132 cysE serine acetyltra 98.5 2.4E-06 5.3E-11 84.8 13.3 16 446-461 194-209 (273)
195 PRK10502 putative acyl transfe 98.5 9.9E-07 2.1E-11 82.9 10.0 77 377-462 72-153 (182)
196 cd00208 LbetaH Left-handed par 98.5 1E-06 2.2E-11 69.9 8.6 33 379-411 3-37 (78)
197 PRK09677 putative lipopolysacc 98.4 1.6E-06 3.5E-11 82.2 11.1 48 363-410 46-103 (192)
198 cd00208 LbetaH Left-handed par 98.4 1.1E-06 2.4E-11 69.7 8.5 68 393-497 1-77 (78)
199 TIGR01172 cysE serine O-acetyl 98.4 9.7E-07 2.1E-11 81.4 9.3 28 435-462 120-148 (162)
200 PRK02862 glgC glucose-1-phosph 98.4 5.7E-07 1.2E-11 95.7 8.7 99 378-497 294-423 (429)
201 PLN02241 glucose-1-phosphate a 98.4 6.3E-07 1.4E-11 95.6 9.1 94 381-495 304-421 (436)
202 TIGR01172 cysE serine O-acetyl 98.4 1E-06 2.2E-11 81.3 8.6 37 377-415 68-104 (162)
203 PLN02357 serine acetyltransfer 98.4 9.2E-07 2E-11 90.3 9.0 67 393-463 247-314 (360)
204 TIGR03536 DapD_gpp 2,3,4,5-tet 98.4 2E-06 4.4E-11 85.7 11.0 15 446-460 251-265 (341)
205 PRK09527 lacA galactoside O-ac 98.4 2.3E-06 4.9E-11 81.7 10.1 98 358-466 59-164 (203)
206 cd04647 LbH_MAT_like Maltose O 98.4 2.1E-06 4.6E-11 72.9 8.8 32 377-410 8-39 (109)
207 COG1045 CysE Serine acetyltran 98.4 1.6E-06 3.6E-11 80.6 8.5 36 425-463 119-155 (194)
208 cd03358 LbH_WxcM_N_like WcxM-l 98.3 2.3E-06 4.9E-11 74.1 8.9 65 377-463 5-79 (119)
209 TIGR03535 DapD_actino 2,3,4,5- 98.3 3.9E-06 8.5E-11 83.3 11.0 16 393-408 194-209 (319)
210 PLN02694 serine O-acetyltransf 98.3 3.4E-06 7.3E-11 84.0 10.2 15 195-209 55-69 (294)
211 cd03357 LbH_MAT_GAT Maltose O- 98.3 8.1E-06 1.8E-10 75.7 12.0 33 377-409 63-99 (169)
212 PLN02357 serine acetyltransfer 98.3 3.9E-06 8.4E-11 85.8 10.4 53 392-462 278-330 (360)
213 PLN02739 serine acetyltransfer 98.3 3.5E-06 7.6E-11 85.5 9.8 28 435-462 264-292 (355)
214 PRK10191 putative acyl transfe 98.3 6.6E-06 1.4E-10 74.5 10.5 29 435-463 99-128 (146)
215 TIGR01208 rmlA_long glucose-1- 98.3 3.3E-06 7.1E-11 87.5 9.8 91 377-492 255-352 (353)
216 PRK09527 lacA galactoside O-ac 98.3 7.7E-06 1.7E-10 78.1 11.5 16 446-461 132-147 (203)
217 cd04649 LbH_THP_succinylT_puta 98.3 6.5E-06 1.4E-10 73.8 10.2 15 446-460 74-88 (147)
218 cd03354 LbH_SAT Serine acetylt 98.3 4.5E-06 9.7E-11 70.5 8.5 27 435-461 61-88 (101)
219 cd03357 LbH_MAT_GAT Maltose O- 98.2 6.2E-06 1.3E-10 76.5 9.3 27 435-461 125-152 (169)
220 PRK10092 maltose O-acetyltrans 98.2 1.4E-05 3.1E-10 75.1 11.2 96 360-463 59-159 (183)
221 COG1208 GCD1 Nucleoside-diphos 98.2 6.3E-06 1.4E-10 85.7 9.5 89 355-468 256-347 (358)
222 PF07959 Fucokinase: L-fucokin 98.2 1.9E-05 4.1E-10 83.5 12.5 96 185-294 54-159 (414)
223 PRK10191 putative acyl transfe 98.1 6.9E-06 1.5E-10 74.3 7.7 33 435-467 93-126 (146)
224 PLN02739 serine acetyltransfer 98.1 6.2E-06 1.3E-10 83.8 7.3 33 435-467 258-291 (355)
225 TIGR03535 DapD_actino 2,3,4,5- 98.1 2.3E-05 5E-10 77.9 10.6 61 388-467 194-263 (319)
226 cd05825 LbH_wcaF_like wcaF-lik 98.1 2E-05 4.3E-10 67.4 8.7 77 376-463 9-86 (107)
227 PRK10502 putative acyl transfe 98.1 1.7E-05 3.7E-10 74.5 8.9 18 392-409 71-88 (182)
228 cd03354 LbH_SAT Serine acetylt 98.0 4.6E-05 1E-09 64.3 9.7 61 377-463 9-72 (101)
229 PRK10092 maltose O-acetyltrans 98.0 2.1E-05 4.7E-10 73.9 8.2 28 435-462 136-164 (183)
230 COG2171 DapD Tetrahydrodipicol 98.0 2.1E-05 4.6E-10 76.6 8.1 97 360-478 108-215 (271)
231 cd05825 LbH_wcaF_like wcaF-lik 98.0 7.9E-05 1.7E-09 63.7 10.7 28 435-462 63-91 (107)
232 COG1045 CysE Serine acetyltran 98.0 2.1E-05 4.7E-10 73.3 7.4 23 393-415 88-110 (194)
233 PRK09677 putative lipopolysacc 98.0 4.8E-05 1E-09 72.1 10.0 55 362-416 31-91 (192)
234 KOG3121 Dynactin, subunit p25 97.9 2.8E-05 6.1E-10 68.4 6.8 35 376-411 39-73 (184)
235 PRK13412 fkp bifunctional fuco 97.9 0.00013 2.8E-09 83.6 13.8 218 186-448 154-392 (974)
236 cd00897 UGPase_euk Eukaryotic 97.9 0.0013 2.9E-08 66.4 19.5 212 64-294 3-234 (300)
237 cd03349 LbH_XAT Xenobiotic acy 97.9 6.7E-05 1.5E-09 67.9 9.0 19 392-410 21-39 (145)
238 COG1083 NeuA CMP-N-acetylneura 97.8 0.00082 1.8E-08 63.6 15.4 216 65-342 4-223 (228)
239 cd04647 LbH_MAT_like Maltose O 97.7 0.00019 4.1E-09 60.8 9.2 26 435-460 65-91 (109)
240 PRK00576 molybdopterin-guanine 97.6 0.0013 2.7E-08 61.4 12.8 94 85-207 3-100 (178)
241 PF01704 UDPGP: UTP--glucose-1 97.5 0.0021 4.6E-08 68.0 15.5 217 60-294 52-289 (420)
242 TIGR02353 NRPS_term_dom non-ri 97.5 0.00045 9.8E-09 77.8 9.6 79 376-467 112-194 (695)
243 COG0110 WbbJ Acetyltransferase 97.4 0.00039 8.4E-09 65.3 7.6 82 376-463 67-154 (190)
244 TIGR02353 NRPS_term_dom non-ri 97.4 0.00053 1.1E-08 77.3 9.2 74 376-462 597-674 (695)
245 COG1861 SpsF Spore coat polysa 97.3 0.0021 4.4E-08 61.3 10.9 114 65-213 3-123 (241)
246 cd06424 UGGPase UGGPase cataly 97.2 0.012 2.6E-07 59.8 15.4 216 66-295 2-254 (315)
247 KOG4750 Serine O-acetyltransfe 97.2 0.0007 1.5E-08 64.2 5.7 27 435-461 207-234 (269)
248 KOG1322 GDP-mannose pyrophosph 97.1 0.00068 1.5E-08 67.9 5.6 93 371-480 258-351 (371)
249 PLN02435 probable UDP-N-acetyl 97.1 0.019 4.2E-07 61.7 16.1 216 58-292 110-363 (493)
250 COG4284 UDP-glucose pyrophosph 97.0 0.029 6.3E-07 59.3 16.0 214 61-291 102-337 (472)
251 COG4801 Predicted acyltransfer 96.9 0.0023 5E-08 61.1 7.0 74 364-461 7-84 (277)
252 PF02348 CTP_transf_3: Cytidyl 96.8 0.014 2.9E-07 55.9 11.5 179 67-289 2-189 (217)
253 KOG4042 Dynactin subunit p27/W 96.7 0.0024 5.2E-08 56.9 4.7 50 360-409 8-64 (190)
254 PF00132 Hexapep: Bacterial tr 96.6 0.0015 3.3E-08 44.0 2.6 26 435-460 8-34 (36)
255 cd03349 LbH_XAT Xenobiotic acy 96.6 0.015 3.2E-07 52.6 9.7 17 445-461 91-107 (145)
256 COG4801 Predicted acyltransfer 96.6 0.0075 1.6E-07 57.7 7.6 74 372-463 29-104 (277)
257 KOG3121 Dynactin, subunit p25 96.4 0.0071 1.5E-07 53.5 5.8 53 392-463 84-137 (184)
258 KOG4750 Serine O-acetyltransfe 96.3 0.013 2.7E-07 55.9 7.3 36 378-415 156-191 (269)
259 KOG4042 Dynactin subunit p27/W 96.1 0.015 3.2E-07 51.9 6.2 42 392-433 26-71 (190)
260 PLN02830 UDP-sugar pyrophospho 96.1 0.55 1.2E-05 52.1 19.7 220 63-294 127-384 (615)
261 PF00132 Hexapep: Bacterial tr 95.9 0.0085 1.8E-07 40.3 3.1 15 393-407 20-34 (36)
262 PF14602 Hexapep_2: Hexapeptid 95.7 0.0092 2E-07 40.1 2.5 11 449-459 5-15 (34)
263 COG0110 WbbJ Acetyltransferase 95.7 0.031 6.7E-07 52.3 6.9 26 471-497 132-157 (190)
264 PF14602 Hexapep_2: Hexapeptid 95.6 0.015 3.3E-07 39.0 3.2 29 378-407 3-32 (34)
265 KOG2638 UDP-glucose pyrophosph 95.0 1.2 2.6E-05 46.5 16.3 151 65-220 104-274 (498)
266 cd00761 Glyco_tranf_GTA_type G 94.7 0.49 1.1E-05 40.5 11.4 94 89-203 2-97 (156)
267 TIGR03552 F420_cofC 2-phospho- 91.6 0.8 1.7E-05 42.9 8.0 84 97-207 31-116 (195)
268 PF00535 Glycos_transf_2: Glyc 91.5 2.7 5.9E-05 36.7 11.1 111 89-220 3-116 (169)
269 PF07959 Fucokinase: L-fucokin 90.6 0.51 1.1E-05 50.2 6.2 41 372-412 280-321 (414)
270 cd04179 DPM_DPG-synthase_like 80.4 17 0.00036 32.8 10.1 109 89-218 2-115 (185)
271 cd02525 Succinoglycan_BP_ExoA 79.2 19 0.0004 34.2 10.4 106 89-216 5-115 (249)
272 cd06434 GT2_HAS Hyaluronan syn 74.7 39 0.00084 31.8 11.2 97 89-208 5-103 (235)
273 cd04186 GT_2_like_c Subfamily 74.3 48 0.001 28.8 11.1 97 89-209 2-101 (166)
274 cd06442 DPM1_like DPM1_like re 72.6 42 0.0009 31.3 10.8 108 89-217 2-113 (224)
275 cd06423 CESA_like CESA_like is 69.9 51 0.0011 28.4 10.1 101 89-209 2-105 (180)
276 cd04188 DPG_synthase DPG_synth 67.7 51 0.0011 30.6 10.2 110 89-218 2-118 (211)
277 cd06427 CESA_like_2 CESA_like_ 66.2 81 0.0017 30.1 11.4 110 89-218 6-120 (241)
278 cd06439 CESA_like_1 CESA_like_ 64.5 97 0.0021 29.5 11.7 98 88-208 33-135 (251)
279 cd04187 DPM1_like_bac Bacteria 61.4 63 0.0014 29.0 9.3 106 89-216 2-113 (181)
280 PRK13412 fkp bifunctional fuco 60.3 14 0.00029 43.5 5.4 28 435-462 343-371 (974)
281 cd02510 pp-GalNAc-T pp-GalNAc- 59.8 1E+02 0.0022 30.6 11.2 105 89-212 3-113 (299)
282 PLN02726 dolichyl-phosphate be 59.0 79 0.0017 30.3 9.9 49 163-217 79-128 (243)
283 cd06438 EpsO_like EpsO protein 57.1 1.5E+02 0.0033 26.8 11.6 106 89-214 2-112 (183)
284 cd04195 GT2_AmsE_like GT2_AmsE 55.1 1.6E+02 0.0036 26.6 11.1 98 89-208 3-106 (201)
285 PRK10073 putative glycosyl tra 54.3 92 0.002 31.8 9.9 107 89-217 11-120 (328)
286 cd04192 GT_2_like_e Subfamily 53.7 1.2E+02 0.0026 28.0 10.0 106 89-212 2-112 (229)
287 cd06433 GT_2_WfgS_like WfgS an 53.5 1.5E+02 0.0032 26.5 10.4 97 89-209 3-102 (202)
288 PRK14583 hmsR N-glycosyltransf 52.6 1E+02 0.0023 32.8 10.4 101 88-209 79-182 (444)
289 cd04184 GT2_RfbC_Mx_like Myxoc 50.4 1.7E+02 0.0037 26.5 10.3 97 90-207 7-108 (202)
290 PRK11204 N-glycosyltransferase 49.9 1.4E+02 0.0031 31.2 10.9 100 89-209 59-161 (420)
291 KOG2388 UDP-N-acetylglucosamin 46.6 18 0.00039 38.7 3.2 77 57-136 90-181 (477)
292 COG1920 Predicted nucleotidylt 44.8 1.6E+02 0.0035 28.0 8.7 105 65-207 1-111 (210)
293 PF04519 Bactofilin: Polymer-f 43.8 60 0.0013 26.9 5.5 12 399-410 37-48 (101)
294 cd02520 Glucosylceramide_synth 40.7 2.9E+02 0.0062 25.2 11.0 102 89-206 6-110 (196)
295 PRK10018 putative glycosyl tra 39.9 3.9E+02 0.0085 26.6 11.8 96 90-208 11-111 (279)
296 cd02511 Beta4Glucosyltransfera 36.3 3.4E+02 0.0074 25.6 10.3 95 89-211 5-99 (229)
297 TIGR03469 HonB hopene-associat 36.1 4.5E+02 0.0098 27.3 11.9 114 89-214 45-165 (384)
298 cd04196 GT_2_like_d Subfamily 33.8 3.6E+02 0.0078 24.4 10.3 98 89-206 3-103 (214)
299 PF13641 Glyco_tranf_2_3: Glyc 33.6 65 0.0014 30.1 4.7 100 89-207 6-111 (228)
300 cd06420 GT2_Chondriotin_Pol_N 33.1 3.4E+02 0.0074 23.9 9.6 100 89-207 2-104 (182)
301 COG1664 CcmA Integral membrane 32.8 1.8E+02 0.0039 26.3 7.0 27 435-461 91-117 (146)
302 cd06421 CESA_CelA_like CESA_Ce 32.5 4E+02 0.0088 24.6 11.4 99 89-208 6-110 (234)
303 PRK00923 sirohydrochlorin coba 31.5 62 0.0013 28.0 3.8 23 94-117 44-66 (126)
304 TIGR03111 glyc2_xrt_Gpos1 puta 31.0 4.5E+02 0.0098 27.9 11.1 100 89-209 54-158 (439)
305 cd06435 CESA_NdvC_like NdvC_li 29.6 3.9E+02 0.0085 24.9 9.5 97 89-207 3-109 (236)
306 cd02526 GT2_RfbF_like RfbF is 29.5 4.6E+02 0.01 24.3 11.1 93 90-204 3-97 (237)
307 PTZ00260 dolichyl-phosphate be 29.1 4.4E+02 0.0096 26.9 10.2 50 163-218 148-201 (333)
308 TIGR03472 HpnI hopanoid biosyn 28.8 4E+02 0.0087 27.5 10.0 101 89-208 46-152 (373)
309 cd02522 GT_2_like_a GT_2_like_ 26.8 4.9E+02 0.011 23.7 10.7 94 89-210 4-100 (221)
310 TIGR02990 ectoine_eutA ectoine 26.3 4E+02 0.0087 26.0 8.8 129 63-206 70-203 (239)
311 PRK11498 bcsA cellulose syntha 23.6 6.7E+02 0.015 29.5 11.2 104 89-218 265-374 (852)
312 COG1215 Glycosyltransferases, 22.7 5.1E+02 0.011 26.9 9.6 106 88-212 58-167 (439)
313 cd04185 GT_2_like_b Subfamily 21.4 6.1E+02 0.013 22.8 10.9 100 89-207 2-104 (202)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.5e-76 Score=591.43 Aligned_cols=384 Identities=38% Similarity=0.664 Sum_probs=348.9
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-cCCCcccC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFG 141 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~~~g~~~~ 141 (497)
..+-|+|||+|.|+||.|||..||||.+|+||+|||||++|+||.++||++|+|+|||++.+|++||.+.| |+.+..
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~-- 81 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK-- 81 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccc--
Confidence 45789999999999999999999999999999999999999999999999999999999999999997655 433211
Q ss_pred CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 142 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 142 ~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
.+++.++++++. +.++.|++|||+|++|.++++.+ ...+.+||++|||+|+|||.+|+++|+++++++|+++.++
T Consensus 82 ~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~V 156 (393)
T COG0448 82 NGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEV 156 (393)
T ss_pred cCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEEC
Confidence 356899998876 45678999999999999999984 4678999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC---C
Q 010922 222 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 298 (497)
Q Consensus 222 ~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~---~ 298 (497)
+.+++++||++.+|++|+|++|.|||.... + ...+++||+|+|++++|.++|++... +
T Consensus 157 p~~eas~fGim~~D~~~~i~~F~eKp~~~~----~---------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~~ 217 (393)
T COG0448 157 PREEASRFGVMNVDENGRIIEFVEKPADGP----P---------------SNSLASMGIYIFNTDLLKELLEEDAKDPNS 217 (393)
T ss_pred ChHhhhhcCceEECCCCCEEeeeeccCcCC----c---------------ccceeeeeeEEEcHHHHHHHHHHHhcccCc
Confidence 988899999999999999999999999721 0 12379999999999999999987543 3
Q ss_pred CCchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhhcCCCCccccCCCCCCCCCCccCCCeEEc-CeEeece
Q 010922 299 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDA 377 (497)
Q Consensus 299 ~~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~s 377 (497)
..||++++||.++++++++||+|+|||.||||+++|++|||+|++..|.+.+||+++||||.....||+++. ++.+.+|
T Consensus 218 ~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nS 297 (393)
T COG0448 218 SHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNS 297 (393)
T ss_pred cccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeee
Confidence 679999999999999999999999999999999999999999999778888999999999999999999995 5778999
Q ss_pred EECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCC
Q 010922 378 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 457 (497)
Q Consensus 378 ~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 457 (497)
.|+.||+|.+ +|+||+|+.|++|+.+|.|++|++|++ |.||+||+|++|||++||+|++|
T Consensus 298 Lv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~g 357 (393)
T COG0448 298 LVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGEG 357 (393)
T ss_pred eeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCCC
Confidence 9999999986 999999999999999999999999999 99999999999999999999999
Q ss_pred cEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCcc
Q 010922 458 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 496 (497)
Q Consensus 458 ~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~ 496 (497)
++|.+.. ++.++.. +.+. +|++||.+++.++.+..
T Consensus 358 ~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 358 VVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred cEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 9999865 5666666 6666 99999999999998765
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.4e-74 Score=561.59 Aligned_cols=361 Identities=39% Similarity=0.637 Sum_probs=328.8
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
+.|+|+||.+|.||||+|||.++||||+|++++ |||+++|++|+++||++|++.++|+++++++|+.+.| +.++|
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y---~~~lg- 82 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY---GKELG- 82 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh---hhccc-
Confidence 789999999999999999999999999999988 6999999999999999999999999999999999988 33566
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
|+|+.++|++ ..|++||+++.|+.+|.+++ .+|+||+||++|++||++|+|+|+++++++|+++.+++
T Consensus 83 --Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd 150 (371)
T KOG1322|consen 83 --VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD 150 (371)
T ss_pred --eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc
Confidence 8999988774 68999999999999998873 48999999999999999999999999999999999998
Q ss_pred CCCCCcceEEEECC-CCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCc
Q 010922 223 ESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 301 (497)
Q Consensus 223 ~~~~~~~g~v~~d~-~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d 301 (497)
+ +++||+|++|+ .|+|.+|.|||+.- .+ +-.++|+|+|++++|.+++ .+|+ +
T Consensus 151 e--pSkyGvv~~d~~~grV~~F~EKPkd~--vs-------------------nkinaGiYi~~~~vL~ri~--~~pt--S 203 (371)
T KOG1322|consen 151 E--PSKYGVVVIDEDTGRVIRFVEKPKDL--VS-------------------NKINAGIYILNPEVLDRIL--LRPT--S 203 (371)
T ss_pred C--ccccceEEEecCCCceeEehhCchhh--hh-------------------ccccceEEEECHHHHhHhh--hccc--c
Confidence 8 89999999998 89999999999933 33 3457999999999999876 4454 3
Q ss_pred hhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhhcCCCCccccCCCCCCCCCCccCCCeEEcCeEeeceE--E
Q 010922 302 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAI--I 379 (497)
Q Consensus 302 ~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~--I 379 (497)
|+++++|.+++++++++|.++|||+|||+|+||+++ +.||+.+.|.++++++.||+++.++++.|++ +
T Consensus 204 iekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g----------~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~i 273 (371)
T KOG1322|consen 204 IEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTG----------FSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASI 273 (371)
T ss_pred hhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHH----------HHHHHhhCcccCCccccCCccccccEeecccccc
Confidence 899999999999999999999999999999999999 5577888899999999999999999998866 4
Q ss_pred CCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcE
Q 010922 380 SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVV 459 (497)
Q Consensus 380 ~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~ 459 (497)
|++|.|+ .+|+||.||+|++|+.|++|+||++++|++++|++++++++++|++++. +|++||+||+||+
T Consensus 274 G~~C~Ig----~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~-------~id~~a~lG~nV~ 342 (371)
T KOG1322|consen 274 GENCSIG----PNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA-------RIDKNAVLGKNVI 342 (371)
T ss_pred CCccEEC----CCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce-------EEecccEeccceE
Confidence 6666666 3599999999999999999999999999999999999999997766664 8999999999999
Q ss_pred EcCCCCCCCCCCCCCCeEEccccEEEccCcEEC
Q 010922 460 IVNKDDVQEADRPELGFYIRSGITIIMEKATIE 492 (497)
Q Consensus 460 i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~ 492 (497)
|.|.+.++++ +++++++++++|.++++|.
T Consensus 343 V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 343 VADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred Eecccccccc----eeEEeccceeecccccccC
Confidence 9999999887 7899999999999999874
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.8e-67 Score=558.23 Aligned_cols=434 Identities=72% Similarity=1.197 Sum_probs=379.1
Q ss_pred CCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-cCCCccc
Q 010922 62 PGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 140 (497)
Q Consensus 62 ~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~~~g~~~ 140 (497)
++.|+|||||+|.|+||+|+|..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| |+.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 457999999999999999999999999999999867999999999999999999999999999999997655 4443344
Q ss_pred CCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEee
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 220 (497)
....++++.+.|+. .++.|++||++|++++++++++..+.+.++|||++||+++++|+.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 43446666655432 2345789999999999988864222225899999999999999999999999999999999998
Q ss_pred eCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCC
Q 010922 221 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 300 (497)
Q Consensus 221 ~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~ 300 (497)
++.+++++||++.+|++++|.+|.|||..+....+++++++|++++.++...++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87655789999999989999999999987666678899999998886555556899999999999999878776655555
Q ss_pred chhhhhHHhhhcc-CceEEEEeccEEEecCCHHHHHHHHHHhhcCCCCccccCCCCCCCCCCccCCCeEEcCeEeeceEE
Q 010922 301 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 379 (497)
Q Consensus 301 d~~~~ii~~li~~-~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~I 379 (497)
+|..++++.++++ .++++|.++|||.|||+|++|++||++++...|...++++..++++.....||+++.+++|.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7889999999987 689999999999999999999999999998877777788888999988888999998899989999
Q ss_pred CCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcE
Q 010922 380 SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVV 459 (497)
Q Consensus 380 ~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~ 459 (497)
+++|.|+++.|.+|+||++|+|+++|+|.++++||.++|.++.+.......|.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999998899999999999999999999999999888877766554554665667999999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 460 IVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 460 i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
|.+++|+.+.++.+++++|++|+++|++++.|.+|++|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999998899999999999986
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.6e-64 Score=532.83 Aligned_cols=427 Identities=54% Similarity=0.947 Sum_probs=367.7
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
+.++|||||||.|+||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|... .+..
T Consensus 2 ~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~--~~~~ 79 (429)
T PRK02862 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD--GFSG 79 (429)
T ss_pred CcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc--ccCC
Confidence 46899999999999999999999999999999966999999999999999999999999999999996544111 1122
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
+.+.++...|.. .+..|++||++||+++.+++++ ...++|||++||+++++|+.++++.|+++++++|+++.+.+
T Consensus 80 g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 154 (429)
T PRK02862 80 GFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVD 154 (429)
T ss_pred CEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecC
Confidence 235555544331 2234568999999999999862 12368999999999999999999999999999999998776
Q ss_pred CCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCch
Q 010922 223 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 302 (497)
Q Consensus 223 ~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~ 302 (497)
.+.++.||++..|++|+|..|.|||..+....+.++.++|..++.+.....+++++|+|+|++++|..+++... ...++
T Consensus 155 ~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~ 233 (429)
T PRK02862 155 EKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDF 233 (429)
T ss_pred hhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-Chhhh
Confidence 44467899999998899999999998655556677778887777665556789999999999999987776532 34567
Q ss_pred hhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhh-cCCCCccccCCCCCCCCCCccCCCeEEcCeEeeceEECC
Q 010922 303 GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISH 381 (497)
Q Consensus 303 ~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~-~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~I~~ 381 (497)
..++++.++++.++.+|.++|||.|+|||++|++||++++ ...|...++.+..++++.+.+.||+.+.+++++++.||+
T Consensus 234 ~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~ 313 (429)
T PRK02862 234 GKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIAE 313 (429)
T ss_pred HHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEECC
Confidence 7899999998899999999999999999999999999998 555666677888999999999999999888999999999
Q ss_pred CCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEc
Q 010922 382 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 461 (497)
Q Consensus 382 ~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~ 461 (497)
+|.|.++.|.+|+||.+|+|+++|+|.+|++|+.++|..++.-..++..|.+++.||+||.|++|+|+++|.||+++.+.
T Consensus 314 ~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~ 393 (429)
T PRK02862 314 GCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIV 393 (429)
T ss_pred CCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEe
Confidence 99997789999999999999999999999999988887766645555577777999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 462 NKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 462 ~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
|++.+.++++..+||+|+.|+++|++++++++||+|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 394 NKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred cCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 999999999999999999999999999999999986
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=9e-58 Score=480.31 Aligned_cols=384 Identities=34% Similarity=0.583 Sum_probs=315.5
Q ss_pred CCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccC
Q 010922 62 PGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 141 (497)
Q Consensus 62 ~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~ 141 (497)
++.|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|-..+. .
T Consensus 3 ~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~--~ 80 (407)
T PRK00844 3 MPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGL--L 80 (407)
T ss_pred CCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcccc--C
Confidence 56799999999999999999999999999999996799999999999999999999999999999999644311111 1
Q ss_pred CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 142 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 142 ~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
..++..++.++. .+++|++|||+||+++.+++.+ ...++|||++||++++.|+.+++++|.++++++|+++..+
T Consensus 81 ~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~ 154 (407)
T PRK00844 81 GNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRV 154 (407)
T ss_pred CCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEec
Confidence 112222211121 1345779999999999999963 1224699999999999999999999999999999998876
Q ss_pred CCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhC---CC
Q 010922 222 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PT 298 (497)
Q Consensus 222 ~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~---~~ 298 (497)
+.+.++.||++..|++|+|.+|.|||..+... .. ...+.++++|+|+|++++|.++|++.. ..
T Consensus 155 ~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~ 220 (407)
T PRK00844 155 PREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADEDS 220 (407)
T ss_pred chHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcc
Confidence 54346789999999889999999998754210 00 002468999999999999877776522 13
Q ss_pred CCchhhhhHHhhhccCceEEEEe------------ccEEEecCCHHHHHHHHHHhhcCCCCccccCCCCCCCCCCccCCC
Q 010922 299 SNDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPP 366 (497)
Q Consensus 299 ~~d~~~~ii~~li~~~~v~~~~~------------~g~w~dIgt~~~y~~An~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 366 (497)
..++..++++.++++.++.+|.+ +|||.|||||++|++||++++++.+...++++..++++..+..||
T Consensus 221 ~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 300 (407)
T PRK00844 221 SHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPP 300 (407)
T ss_pred cccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCC
Confidence 45677899999999999999977 599999999999999999999887777777788888888778888
Q ss_pred eEEc-Ce----EeeceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCc
Q 010922 367 TKID-NC----RIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNT 441 (497)
Q Consensus 367 ~~i~-~~----~i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 441 (497)
+.+. ++ .+.+++||++|.|+++.|++|+||++|+|+++|+|++|++|++ +.||++|
T Consensus 301 ~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~ 361 (407)
T PRK00844 301 AKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGA 361 (407)
T ss_pred ceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCC
Confidence 8773 32 5678999999999888999999999999999999999999988 8999999
Q ss_pred EeeceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEE-ccccEEEccCcEE
Q 010922 442 KIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITIIMEKATI 491 (497)
Q Consensus 442 ~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i-~~g~~vi~~~~~i 491 (497)
.|.+|+|+++++|++++++.+. .+.+ +++++| ++|+++|++|++|
T Consensus 362 ~i~~~ii~~~~~i~~~~~i~~~---~~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 362 VVRRAILDKNVVVPPGATIGVD---LEED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred EEEeeEECCCCEECCCCEECCC---cccc--ccceEeccceEEEeCCCCCC
Confidence 9999999999999999999874 1333 567888 5899999988864
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.4e-57 Score=473.01 Aligned_cols=369 Identities=36% Similarity=0.599 Sum_probs=314.5
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
+.|+|||||||.||||+|+|..+||||+||+|+||||+|+|++|.++|+++|+|+++|+++++.+|+.+ +.+|+.
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-----~~~~~~ 76 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGI-----GSPWDL 76 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhC-----CCcccc
Confidence 579999999999999999999999999999999669999999999999999999999999999888852 223331
Q ss_pred ----CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEE
Q 010922 143 ----GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 218 (497)
Q Consensus 143 ----~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~ 218 (497)
..++++++.+. +..++|++||++||+++.+++++ ...++|||++||++++.|+.++++.|+++++++|+++
T Consensus 77 ~~~~~~~~i~~~~~~--~~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~ 151 (380)
T PRK05293 77 DRINGGVTILPPYSE--SEGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAV 151 (380)
T ss_pred cCCCCCEEEeCCccc--CCCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEE
Confidence 12556543322 23346889999999999999862 1236899999999999999999999999999999988
Q ss_pred eeeCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC-
Q 010922 219 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP- 297 (497)
Q Consensus 219 ~~~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~- 297 (497)
...+.+.+..||++..|++|+|.+|.|||..+. .+++++|+|+|++++|..++++...
T Consensus 152 ~~~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~ 210 (380)
T PRK05293 152 IEVPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKN 210 (380)
T ss_pred EEcchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhc
Confidence 776544467899999998899999999986442 3678999999999998777765321
Q ss_pred --CCCchhhhhHHhhhcc-CceEEEEeccEEEecCCHHHHHHHHHHhhcCCCCccccCCCCCCCCCCccCCCeEEc-CeE
Q 010922 298 --TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCR 373 (497)
Q Consensus 298 --~~~d~~~~ii~~li~~-~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~ 373 (497)
...+|.+++++.++++ .++.+|.+++||.|+||+++|++||+.++...+...++++...+++.+.+.+|++|. +++
T Consensus 211 ~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 290 (380)
T PRK05293 211 PNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAK 290 (380)
T ss_pred CCchhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCE
Confidence 2346788999999976 689999999999999999999999999998777777888888888888889999995 688
Q ss_pred eeceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCE
Q 010922 374 IKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 453 (497)
Q Consensus 374 i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~ 453 (497)
|.++.|++||.|+ +.+.+|+||++|+|+++|+|++|+++.+ +.||+++.|.+|+|++++.
T Consensus 291 i~~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~ 350 (380)
T PRK05293 291 VKNSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAV 350 (380)
T ss_pred EecCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCE
Confidence 9999999999997 5688999999999999999999999988 8999999999999999999
Q ss_pred ECCCcEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 454 IGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 454 Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
|++++.+.+... +..+||++++|+++++|
T Consensus 351 i~~~~~i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 351 IGDGVIIGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred ECCCCEEcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 999999986421 13678999999999876
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.5e-56 Score=473.19 Aligned_cols=388 Identities=34% Similarity=0.590 Sum_probs=318.3
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
..++|||||||.||||+|+|..+||||+||+|+||||+|+|++|.++|+++|+|+++|+++++.+|+.+.|-...... .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~-~ 92 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREEL-G 92 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCC-C
Confidence 358999999999999999999999999999999779999999999999999999999999999999965430011111 1
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
.++.++++.+.. ..++|++|||+|++++.++++. ...++|+|++||++++.|+.++++.|+++++++|+++.+++
T Consensus 93 ~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~ 167 (425)
T PRK00725 93 EFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVP 167 (425)
T ss_pred CeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecc
Confidence 345666544431 2346789999999999999962 12468999999999999999999999999999999998765
Q ss_pred CCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhC---CCC
Q 010922 223 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTS 299 (497)
Q Consensus 223 ~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~---~~~ 299 (497)
.+.+..||++..|++++|.+|.|||..+.. ++. ...++++++|+|+|++++|.++|++.. ...
T Consensus 168 ~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~~------------~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~ 233 (425)
T PRK00725 168 REEASAFGVMAVDENDRITAFVEKPANPPA--MPG------------DPDKSLASMGIYVFNADYLYELLEEDAEDPNSS 233 (425)
T ss_pred hhhcccceEEEECCCCCEEEEEECCCCccc--ccc------------CccceEEEeeEEEEeHHHHHHHHHHhhcCCCcc
Confidence 444678999999988999999999875421 000 002468999999999999877776532 124
Q ss_pred CchhhhhHHhhhccCceEEEEec-----------cEEEecCCHHHHHHHHHHhhcCCCCccccCCCCCCCCCCccCCCeE
Q 010922 300 NDFGSEIIPAAIMEHDVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTK 368 (497)
Q Consensus 300 ~d~~~~ii~~li~~~~v~~~~~~-----------g~w~dIgt~~~y~~An~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 368 (497)
.+|.+++++.++++.++++|.+. +||.|||||++|++||++++...+...+++...++++..+..||+.
T Consensus 234 ~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~ 313 (425)
T PRK00725 234 HDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAK 313 (425)
T ss_pred chhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCe
Confidence 57788999999999999999996 5999999999999999999987777777778888888887888887
Q ss_pred Ec----C--eEeeceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcE
Q 010922 369 ID----N--CRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 442 (497)
Q Consensus 369 i~----~--~~i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 442 (497)
+. + +.+.+|+||+||+|.++.|++|+||++|+|+++|+|++|++|++ +.||++|+
T Consensus 314 ~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~~~ 374 (425)
T PRK00725 314 FVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRSCR 374 (425)
T ss_pred EeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCCCE
Confidence 62 2 45679999999999888999999999999999999999999998 99999999
Q ss_pred eeceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEE-ccccEEEccCcEECCC
Q 010922 443 IRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITIIMEKATIEDG 494 (497)
Q Consensus 443 i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i-~~g~~vi~~~~~i~~g 494 (497)
|++|||+++|+|+++++|... ..+ .+++++| +.|+++|++++.+.-|
T Consensus 375 i~~~ii~~~~~i~~~~~i~~~-~~~----~~~~~~~~~~~~~~i~~~~~~~~~ 422 (425)
T PRK00725 375 LRRCVIDRGCVIPEGMVIGED-PEE----DAKRFRRSEEGIVLVTREMLDKLG 422 (425)
T ss_pred EeeEEECCCCEECCCCEECCC-CCC----CCceeEecCccEEEECCCcccccc
Confidence 999999999999999999643 122 2234665 8899999999766433
No 8
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=2.2e-51 Score=425.35 Aligned_cols=356 Identities=47% Similarity=0.806 Sum_probs=291.0
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
|||||||.|+||+|+|.++||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.| ... ......++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGW-DFD-GFIDGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhcc-Ccc-CccCCCEE
Confidence 6999999999999999999999999999955999999999999999999999999999999997543 111 00012356
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCCCC
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 226 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 226 (497)
+++..+. +..++|++||+++++.+.+++++ ...++|+|++||++++.++.++++.|.++++++|+++.+.+.+.+
T Consensus 79 ~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~ 153 (361)
T TIGR02091 79 LLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEA 153 (361)
T ss_pred EeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhc
Confidence 6544332 23456778999999999998862 123679999999999999999999999888889998887754446
Q ss_pred CcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhC---CCCCchh
Q 010922 227 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFG 303 (497)
Q Consensus 227 ~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~---~~~~d~~ 303 (497)
.+||++.+|++++|.+|.|||..+.... + .+ ..+++++|+|+|++++|.++++... ....+|.
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~~~~--------~-~~-----~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 219 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPPSIP--------G-MP-----DFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCccccc--------c-cc-----cccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccH
Confidence 7899999998899999999986442110 0 00 1248999999999999876666532 1234677
Q ss_pred hhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhhcCCCCccccCCCCCCCCC-CccCCCeEEcC-eEeeceEECC
Q 010922 304 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS-PRFLPPTKIDN-CRIKDAIISH 381 (497)
Q Consensus 304 ~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~~~~~~~~~~i~~~-~~~~~~~~i~~-~~i~~s~I~~ 381 (497)
.++++.++++.++++|.++++|.||||+++|++||++++++.+....++...++++. ..+.|+++++. +.+.++.||+
T Consensus 220 ~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~ 299 (361)
T TIGR02091 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299 (361)
T ss_pred HHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECC
Confidence 899999999999999999999999999999999999999877654444445555433 34567777854 6888999999
Q ss_pred CCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEc
Q 010922 382 GCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 461 (497)
Q Consensus 382 ~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~ 461 (497)
+|.|+++.|.+|+||++|+|+++|+|.+|+++++ +.||+++.|++|+||++++|++++.|.
T Consensus 300 ~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 300 GCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred CCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeC
Confidence 9999987999999999999999999999999988 899999999999999999999999987
Q ss_pred C
Q 010922 462 N 462 (497)
Q Consensus 462 ~ 462 (497)
|
T Consensus 361 ~ 361 (361)
T TIGR02091 361 N 361 (361)
T ss_pred C
Confidence 5
No 9
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2.1e-51 Score=426.76 Aligned_cols=349 Identities=23% Similarity=0.396 Sum_probs=277.5
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChh-HHHHHHHhcc-cCCCcccC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTY-FGNGTNFG 141 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~-~l~~~l~~~y-~~~g~~~~ 141 (497)
.|+|||||+|.|+||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+++ ++.+|+.+.. |+......
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~ 81 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD 81 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence 589999999999999999999999999999995599999999999999999999999987 8999985321 22111110
Q ss_pred CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 142 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 142 ~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
...+.+.... +.+-.|++++++++++++++ ...++|||++||+++++|+.+++++|+++++++|+++.++
T Consensus 82 ~~~~~~~~e~-------~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v 151 (369)
T TIGR02092 82 GLFVFPYNDR-------DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKV 151 (369)
T ss_pred cEEEEeccCC-------CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEec
Confidence 0011121111 12335788889999888852 1237899999999999999999999999999999999887
Q ss_pred CCCCCCcce-EEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC-C
Q 010922 222 GESRASDYG-LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-S 299 (497)
Q Consensus 222 ~~~~~~~~g-~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~-~ 299 (497)
+...+..|| ++..|++|+|..|.+++... ....+++|+|+|++++|.+++++..+. .
T Consensus 152 ~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 210 (369)
T TIGR02092 152 KPADASEYDTILRFDESGKVKSIGQNLNPE---------------------EEENISLDIYIVSTDLLIELLYECIQRGK 210 (369)
T ss_pred CHHHccccCcEEEEcCCCCEEeccccCCCC---------------------CcceeeeeEEEEEHHHHHHHHHHHhhcCc
Confidence 633356674 56677778888875443221 124568999999999887677654332 3
Q ss_pred CchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhhcCCCCcccc-CCCCCCCCCCccCCCeEE-cCeEeece
Q 010922 300 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKI-DNCRIKDA 377 (497)
Q Consensus 300 ~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~~~~~-~~~~~i~~~~~~~~~~~i-~~~~i~~s 377 (497)
.++..+++++++++.++++|.+++||.|||||++|++||++++++......+ ....++++.....+|++| ++++|.+|
T Consensus 211 ~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~ 290 (369)
T TIGR02092 211 LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENS 290 (369)
T ss_pred cccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEe
Confidence 3556789999988889999999999999999999999999999876433323 233456665556799999 46999999
Q ss_pred EECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCC
Q 010922 378 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 457 (497)
Q Consensus 378 ~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 457 (497)
+||+||.|+ +.|++|+||++|+|+++|.|.+|+++++ +.|++++.|.+|+||++++||++
T Consensus 291 ~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~ 350 (369)
T TIGR02092 291 LVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPN 350 (369)
T ss_pred EEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCC
Confidence 999999997 6799999999999999999999999988 89999999999999999999999
Q ss_pred cEEcCC
Q 010922 458 VVIVNK 463 (497)
Q Consensus 458 ~~i~~~ 463 (497)
+.+.+.
T Consensus 351 ~~~~~~ 356 (369)
T TIGR02092 351 VKIAGT 356 (369)
T ss_pred CEeCCC
Confidence 999654
No 10
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-50 Score=417.95 Aligned_cols=352 Identities=23% Similarity=0.405 Sum_probs=281.3
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
.|+|||||+|.||||+|+|.++||||+||+|+ |||+|+|++|.++|+++|+|+++|..+.+.+|+... ..++.
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-----~~~~~- 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-----EGLGV- 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-----cccCC-
Confidence 58999999999999999999999999999999 599999999999999999999999999888888532 22231
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCC
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 223 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 223 (497)
.++.+.... ++|||++|+++.+++. .++|++++||++++.|+.+++++|+++++.+|+...++++
T Consensus 74 ~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 74 RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC
Confidence 144443322 3799999999999886 2799999999999999999999999998889998888877
Q ss_pred CCCCcceEEEECCC-CCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCch
Q 010922 224 SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 302 (497)
Q Consensus 224 ~~~~~~g~v~~d~~-g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~ 302 (497)
+ +.||++..+++ ++|.+|.|||..... .++++++|+|+|++++|. +++. ....+|
T Consensus 139 ~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~~ 194 (358)
T COG1208 139 P--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFDF 194 (358)
T ss_pred C--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCcccc
Confidence 4 78999998844 599999999953110 247999999999999997 3332 234567
Q ss_pred hhhhHHhhhccCc-eEEEEeccEEEecCCHHHHHHHHHHhhcCCCCccccCCCCC---CCCCCccCCCeEEcCeEeeceE
Q 010922 303 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP---FYTSPRFLPPTKIDNCRIKDAI 378 (497)
Q Consensus 303 ~~~ii~~li~~~~-v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~~~~~~~~~~---i~~~~~~~~~~~i~~~~i~~s~ 378 (497)
..+++|.++++.. +++|.++|||.|||||++|.+|+..+..............+ +.. +.+.+|++|.. ++.
T Consensus 195 ~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~~ 269 (358)
T COG1208 195 EEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GAK 269 (358)
T ss_pred hhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CCE
Confidence 7789999999987 99999999999999999999999999865432211101111 111 23344444432 456
Q ss_pred ECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCc
Q 010922 379 ISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 458 (497)
Q Consensus 379 I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~ 458 (497)
|+++|.|+ .+|+||++|+|+.++.|.+|++|++ +.||+++.|.+|||+.||+||++.
T Consensus 270 i~~~~~i~----~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~ 326 (358)
T COG1208 270 IGPGALIG----PYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL 326 (358)
T ss_pred ECCCCEEC----CCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce
Confidence 66666666 4699999999999999999999999 899999999999999999999922
Q ss_pred EEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 459 VIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 459 ~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
. +++ ...+.++.+..| +++++++.+..++++
T Consensus 327 -~-----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 327 -I-----IGD-VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred -e-----ecc-eEecCceEEcCc-eEeCCCccccCcccc
Confidence 2 667 777778888777 445888888887653
No 11
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=1.4e-46 Score=388.33 Aligned_cols=327 Identities=17% Similarity=0.291 Sum_probs=255.5
Q ss_pred EEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEccc-ChhHHHHHHHhcccCCCcccCCCe
Q 010922 66 YAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 66 ~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~-~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
+|||||||.|+||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++ ..+++.+|+.. +..|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~-----~~~~~~~- 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE-----GERFGAK- 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc-----ccccCce-
Confidence 589999999999999999999999999999 699999999999999999999999 88889888852 2244422
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 224 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 224 (497)
+.++... +..||++++++++.+++ .++|+|++||++++.++.++++.|.++++++|+++.+.++
T Consensus 74 ~~~~~~~---------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~- 137 (353)
T TIGR01208 74 ITYIVQG---------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD- 137 (353)
T ss_pred EEEEECC---------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 2222211 23799999999998885 2689999999999999999999999999999999988765
Q ss_pred CCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC--CCCch
Q 010922 225 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--TSNDF 302 (497)
Q Consensus 225 ~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~--~~~d~ 302 (497)
+..|+++..|++++|.+|.|||..+. +.++++|+|+|++.++. .+++..+ ....+
T Consensus 138 -~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~ 194 (353)
T TIGR01208 138 -PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELE 194 (353)
T ss_pred -hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEE
Confidence 56799888876779999999987542 36789999999997665 5554333 22345
Q ss_pred hhhhHHhhhcc-CceEEEEeccEEEecCCHHHHHHHHHHhhcCCCCccccCCCCCCCCCCccCCCeEEc-CeEeeceEEC
Q 010922 303 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 380 (497)
Q Consensus 303 ~~~ii~~li~~-~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~s~I~ 380 (497)
..++++.++++ .++++|.+++||.|||||++|++||+.++++... .+. ++.+++.+.||++|. ++.|.++.|+
T Consensus 195 l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~~----~i~~~~~i~~~~~i~~~~~i~~~~i~ 269 (353)
T TIGR01208 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EVQ----GVDDESKIRGRVVVGEGAKIVNSVIR 269 (353)
T ss_pred HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-ccC----CcCCCCEEcCCEEECCCCEEeCCEEE
Confidence 67899999877 5799999999999999999999999999975321 111 245556667777774 4777666666
Q ss_pred CCCEEc-ceEEeeeEEcCCcEECCCCEEc-----ceEEeCCccccchhHHHHhhcCCCcceEeCCC-cEeeceEEcCCCE
Q 010922 381 HGCFLR-ECTVEHSIVGERSRLDYGVELK-----DTVMLGADYYQTESEIASLLAEGKVPIGVGRN-TKIRNCIIDKNVK 453 (497)
Q Consensus 381 ~~~~i~-~~~v~~svIg~~~~i~~~~~i~-----~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~-~~i~~~iI~~~~~ 453 (497)
.+|.|+ +|.|.+|+|+.+|+|+++|+|+ +++++.+ +.|+.+ +.+.+|+|+++++
T Consensus 270 ~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred CCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCCE
Confidence 666666 4566666677777777666665 4444444 677777 4778888888888
Q ss_pred ECCCcEEcC
Q 010922 454 IGKDVVIVN 462 (497)
Q Consensus 454 Ig~~~~i~~ 462 (497)
|+.++.+.+
T Consensus 331 i~~~~~~~~ 339 (353)
T TIGR01208 331 IKGNRRRPG 339 (353)
T ss_pred ECCCccccc
Confidence 888887764
No 12
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-43 Score=378.62 Aligned_cols=389 Identities=19% Similarity=0.259 Sum_probs=284.3
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
+.++|||||+|.|+||++ .+||||+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+ +.
T Consensus 2 ~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~-----~~---- 68 (459)
T PRK14355 2 NNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAG-----DG---- 68 (459)
T ss_pred CcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhcc-----CC----
Confidence 358999999999999974 789999999999 69999999999999999999999998888888742 10
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEee
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~ 220 (497)
.+.++... +.+||+++++++++++++ ..++|++++||+ +...++.++++.|...++++++...+
T Consensus 69 -~i~~~~~~---------~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~ 134 (459)
T PRK14355 69 -DVSFALQE---------EQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTAR 134 (459)
T ss_pred -ceEEEecC---------CCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 13333211 136999999999998862 246899999998 45778999999998888888888877
Q ss_pred eCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC---
Q 010922 221 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 297 (497)
Q Consensus 221 ~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~--- 297 (497)
.++ +..|+.+..|++|+|.+|.|||...... ..++++++|+|+|++++|.+.+++..+
T Consensus 135 ~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 195 (459)
T PRK14355 135 LEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNA 195 (459)
T ss_pred cCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCcccc
Confidence 665 4579998898889999999987432110 023678999999999987666665432
Q ss_pred CCCchhhhhHHhhhcc-CceEEEEeccE--EEecCCHHHHHHHHHHhhcCC------CCccccCCCC-CCCCCCccCCCe
Q 010922 298 TSNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPKT-PFYTSPRFLPPT 367 (497)
Q Consensus 298 ~~~d~~~~ii~~li~~-~~v~~~~~~g~--w~dIgt~~~y~~An~~l~~~~------~~~~~~~~~~-~i~~~~~~~~~~ 367 (497)
....+.+++++.++++ .++.+|.+++| |.|++||++|++|++.+..+. ....++++.. .+...+.+++++
T Consensus 196 ~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~ 275 (459)
T PRK14355 196 QGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDT 275 (459)
T ss_pred CCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCC
Confidence 2345678999999987 47999999987 999999999999987665432 1112455543 345555666666
Q ss_pred EEc-CeEee-ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHH--HHhhcCCCc--------c
Q 010922 368 KID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKV--------P 434 (497)
Q Consensus 368 ~i~-~~~i~-~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~--~~~~~~~~~--------~ 434 (497)
.|. +|.|. +++||++|.|+ ++.|.+|+||++|+|++++.|.++++.++.+++..+-+ .+.++++-+ .
T Consensus 276 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~ 355 (459)
T PRK14355 276 TIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKK 355 (459)
T ss_pred EEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccC
Confidence 663 46664 58888888887 57788888888888888888888877666555443333 222333300 0
Q ss_pred eEeCCCcE------eeceEEcCCCEECCCcEEcCCCCCCC-CCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 435 IGVGRNTK------IRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 435 ~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
+.||++++ +.+|+|++++.||+++++.|.++... ...++++++|+.+.+ .||++++|++|++|
T Consensus 356 ~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 356 IVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 22333333 33578899999999998887665432 345666666666653 36888888888764
No 13
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-43 Score=381.02 Aligned_cols=389 Identities=17% Similarity=0.188 Sum_probs=286.9
Q ss_pred CCCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCccc
Q 010922 61 KPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 140 (497)
Q Consensus 61 ~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~ 140 (497)
.|+.+.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.. + ..
T Consensus 1 ~~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-~~---- 70 (482)
T PRK14352 1 APRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAE-L-AP---- 70 (482)
T ss_pred CCCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhc-c-CC----
Confidence 36788999999999999986 689999999999 59999999999999999999999988877777742 1 00
Q ss_pred CCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe-e-eccCHHHHHHHHHHcCCCeEEEE
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISC 218 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l-~~~dl~~ll~~h~~~~a~~tl~~ 218 (497)
. +.++... +..||+++++.++.++.+ ...++|+|++||+ + ...++.++++.|++.+++++++.
T Consensus 71 ~---~~~~~~~---------~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 71 E---VDIAVQD---------EQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred c---cEEEeCC---------CCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 1 2233211 236999999999988752 1246799999998 3 45689999999988888888887
Q ss_pred eeeCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC
Q 010922 219 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 298 (497)
Q Consensus 219 ~~~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~ 298 (497)
.+.++ +..|+.+..|++|+|.+|.|||..+.... ...++++|+|+|++++|.+++++..+.
T Consensus 136 ~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~~-----------------~~~~~~~Giy~f~~~~l~~~~~~~~~~ 196 (482)
T PRK14352 136 TTLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQR-----------------AIREVNSGVYAFDAAVLRSALARLSSD 196 (482)
T ss_pred eecCC--CCCCCEEEECCCCCEEEEEECCCCCHHHh-----------------hcceEEEEEEEEEHHHHHHHHHhhCcc
Confidence 77665 56799888888899999999988542110 135689999999999997776654332
Q ss_pred ---CCchhhhhHHhhhcc-CceEEEEeccEEEecCCHHHH------HHHHHHhhcCC---------CCccccCCCCCCCC
Q 010922 299 ---SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSF------YEANMALTKES---------PAFHFYDPKTPFYT 359 (497)
Q Consensus 299 ---~~d~~~~ii~~li~~-~~v~~~~~~g~w~dIgt~~~y------~~An~~l~~~~---------~~~~~~~~~~~i~~ 359 (497)
.+.+.+++++.++++ .++++|.+++||.|+|+++.| ..+|..+++.. |...++++...+.+
T Consensus 197 ~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~ 276 (482)
T PRK14352 197 NAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGR 276 (482)
T ss_pred ccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECC
Confidence 345678999999988 489999999999999999888 55665554331 11222333333333
Q ss_pred CC------------ccCCCeEEc-CeEeeceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCC-ccccchhHH-
Q 010922 360 SP------------RFLPPTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA-DYYQTESEI- 424 (497)
Q Consensus 360 ~~------------~~~~~~~i~-~~~i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~-~~~~~~~~~- 424 (497)
.+ .+++++.|. +|+|.+++||++|.|+++.+.+|+||+++.|++++.|....++++ ..++..+|+
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~ 356 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETK 356 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEc
Confidence 33 333333332 355667778888888777778899999999999999985555554 445555555
Q ss_pred HHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCC-------CCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 425 ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 425 ~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
.+.+.++ +.|++.+.+.+|+||++|.||.++++.+.++ +++..+++.++.|..|+ .||+++.|++|++|
T Consensus 357 ~~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~-~Ig~~~~igags~v 432 (482)
T PRK14352 357 NATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPV-TVGDGAYTGAGTVI 432 (482)
T ss_pred ccEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCC-EECCCcEECCCCEE
Confidence 4566677 7888888889999999999999999987543 33444445555554443 36999999999864
No 14
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-43 Score=356.62 Aligned_cols=385 Identities=22% Similarity=0.270 Sum_probs=310.0
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
.|.+||||||.||||+ +..||.|.||+|+ ||++|+++.+...+.+++.+|+++..+.+...+.+.. .
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~-------~-- 68 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD-------D-- 68 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc-------C--
Confidence 5789999999999998 4799999999999 5999999999999999999999999999888885211 1
Q ss_pred eEE-EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe-ee-ccCHHHHHHHHHHcCCCeEEEEee
Q 010922 144 FVE-VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 144 ~Ve-Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~ 220 (497)
++ +++.. ++||++|+.++.++|.+ ...+++||++||+ |. ..-+.++++.|...++.++++...
T Consensus 69 -v~~v~Q~e----------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~ 134 (460)
T COG1207 69 -VEFVLQEE----------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAE 134 (460)
T ss_pred -ceEEEecc----------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEE
Confidence 22 23322 27999999999999942 2345799999998 44 556788999999999999999999
Q ss_pred eCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC---
Q 010922 221 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 297 (497)
Q Consensus 221 ~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~--- 297 (497)
.++ |..||.+..+++|+|.++.|..+..... ..-..+++|+|+|+...|.+.|.+...
T Consensus 135 ~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~ee-----------------k~I~eiNtGiy~f~~~~L~~~L~~l~nnNa 195 (460)
T COG1207 135 LDD--PTGYGRIVRDGNGEVTAIVEEKDASEEE-----------------KQIKEINTGIYAFDGAALLRALPKLSNNNA 195 (460)
T ss_pred cCC--CCCcceEEEcCCCcEEEEEEcCCCCHHH-----------------hcCcEEeeeEEEEcHHHHHHHHHHhccccc
Confidence 888 7889999999999999999987654321 123678999999999988888776543
Q ss_pred CCCchhhhhHHhhhcc-CceEEEEeccE--EEecCCHHHHHHHHHHhhcCC-------------CCccccCCCCCCCCCC
Q 010922 298 TSNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSP 361 (497)
Q Consensus 298 ~~~d~~~~ii~~li~~-~~v~~~~~~g~--w~dIgt~~~y~~An~~l~~~~-------------~~~~~~~~~~~i~~~~ 361 (497)
..+.|++|++..+-.+ .++.++...++ ..-+++-..+.+++..|-++. |...+++.+..+-..+
T Consensus 196 qgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dv 275 (460)
T COG1207 196 QGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDV 275 (460)
T ss_pred cCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCce
Confidence 3567888999877665 68888888765 456788888888887665542 4333444444444444
Q ss_pred ccCCCeEEc-------------CeEeeceEECCCCEEcc-eEEeeeEEcCCcEECCCCEEcceEEeCC-ccccchhHH-H
Q 010922 362 RFLPPTKID-------------NCRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGA-DYYQTESEI-A 425 (497)
Q Consensus 362 ~~~~~~~i~-------------~~~i~~s~I~~~~~i~~-~~v~~svIg~~~~i~~~~~i~~s~i~~~-~~~~~~~~~-~ 425 (497)
.+.|++.++ +|+|+||.|++||.|.. +.+++|.||++|.||+.+.|+....+++ .-++.++|+ .
T Consensus 276 vI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~ 355 (460)
T COG1207 276 VIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKK 355 (460)
T ss_pred EEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEec
Confidence 455543332 35667777788888876 7788999999999999999997777776 667889999 8
Q ss_pred HhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCC-CCCCCCCeEEccccEE-----EccCcEECCCccC
Q 010922 426 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGITI-----IMEKATIEDGMVI 497 (497)
Q Consensus 426 ~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~v-----i~~~~~i~~g~~i 497 (497)
+.|++| +.++|-++|.+|-||+++.||+|++..|+||... .+.+|++++|+|+... ||+++.|++||+|
T Consensus 356 a~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 356 ATIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred ccccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 999999 9999999999999999999999999999999985 5899999999999853 8999999999986
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.7e-43 Score=373.45 Aligned_cols=384 Identities=19% Similarity=0.235 Sum_probs=264.2
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
..|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+.+.+|+.. .+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~--------~~- 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG--------SG- 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc--------CC-
Confidence 468999999999999986 589999999999 69999999999999999999999988888777631 11
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEee
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~ 220 (497)
+.++... ++.||+++++.+..++.. ..++|+|++||+ +...++.++++.|+++++++|+++.+
T Consensus 73 --i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~ 137 (481)
T PRK14358 73 --VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGE 137 (481)
T ss_pred --cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 3444321 247999999999888751 235799999998 45678999999999999999998888
Q ss_pred eCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhC---C
Q 010922 221 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 297 (497)
Q Consensus 221 ~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~---~ 297 (497)
+++ ++.||++..|++|+|.+|.|||..+... ....++++|+|+|+++++. +++... +
T Consensus 138 ~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~ 197 (481)
T PRK14358 138 LPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDNK 197 (481)
T ss_pred cCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCcc
Confidence 775 4579999999889999999998753210 0124689999999977532 333321 2
Q ss_pred CCCchhhhhHHhhhccC-ceEEEEeccEEEecCCHHHHHHHHHH-hhcCCC-------CccccCCCC-------CCCCCC
Q 010922 298 TSNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMA-LTKESP-------AFHFYDPKT-------PFYTSP 361 (497)
Q Consensus 298 ~~~d~~~~ii~~li~~~-~v~~~~~~g~w~dIgt~~~y~~An~~-l~~~~~-------~~~~~~~~~-------~i~~~~ 361 (497)
..+.+.+++++.+++++ ++.+|.+.++|..++...+|+.+++. ++.+.. .....+|.. .|..++
T Consensus 198 ~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~ 277 (481)
T PRK14358 198 AGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDV 277 (481)
T ss_pred CCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCC
Confidence 23455679999999874 69999999999999988888777764 443211 001112211 111111
Q ss_pred c------------cCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcc-eEEeCCccccchhHH-H
Q 010922 362 R------------FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-A 425 (497)
Q Consensus 362 ~------------~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~-s~i~~~~~~~~~~~~-~ 425 (497)
. +++++.|. +|.|.+|+|+++|.|+ ++.+.+++||+++.|++++.|.. +++-++..++..+++ .
T Consensus 278 ~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~ 357 (481)
T PRK14358 278 TIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKN 357 (481)
T ss_pred EEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECC
Confidence 1 22222221 2444455555555555 34555556666666666666643 333333444555555 4
Q ss_pred HhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCC-CCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 426 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 426 ~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
+.+..| +.||+.+.+.+|+||+||.||.++++.|.++... ...+++++.|+.+.+ .||+++.|++|+++
T Consensus 358 ~~i~~~---~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 358 ARLDAG---VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred ceecCC---cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 445555 6666667778899999999999999988654422 235555555555443 37888888888864
No 16
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.8e-42 Score=364.09 Aligned_cols=373 Identities=18% Similarity=0.250 Sum_probs=280.2
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
.++|||||||.|+||++ .+||||+||+|+ |||+|+++.|.++ +++|.|++++..+++.+|+.+.+ . +
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~-~-----~-- 68 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF-P-----G-- 68 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC-C-----c--
Confidence 36899999999999986 799999999999 5999999999987 78999999999999988885321 1 1
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCC
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 223 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 223 (497)
++++.... ..+.||+++++.+.. ..++||+++||..+. ..+.++.+.++++++++.+.+.++
T Consensus 69 -v~~~~~~~-------~~~~gt~~al~~~~~--------~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~ 130 (430)
T PRK14359 69 -VIFHTQDL-------ENYPGTGGALMGIEP--------KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD 130 (430)
T ss_pred -eEEEEecC-------ccCCCcHHHHhhccc--------CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC
Confidence 44443211 123699999987421 247899999998442 235566677777888888888766
Q ss_pred CCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC---CCC
Q 010922 224 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSN 300 (497)
Q Consensus 224 ~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~---~~~ 300 (497)
+..|+.+..| +|+|..+.|||...... ...++.++|+|+|++++|.++++.... ...
T Consensus 131 --~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e 190 (430)
T PRK14359 131 --PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKE 190 (430)
T ss_pred --CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCc
Confidence 4569987775 68999999987642100 013678999999999999876554321 233
Q ss_pred chhhhhHHhhhcc-CceEEEEec-cEEEecCCHHHHHHHHHHhhcCCC-------------CccccCCCCCCCCCCccCC
Q 010922 301 DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESP-------------AFHFYDPKTPFYTSPRFLP 365 (497)
Q Consensus 301 d~~~~ii~~li~~-~~v~~~~~~-g~w~dIgt~~~y~~An~~l~~~~~-------------~~~~~~~~~~i~~~~~~~~ 365 (497)
.+.+++++.++++ .++.+|.++ ++|.||+||+||++|+..+..+.. ..-++++...+...+.+++
T Consensus 191 ~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~ 270 (430)
T PRK14359 191 YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEE 270 (430)
T ss_pred eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECC
Confidence 5677889988877 789999987 699999999999999866554321 1112344445555566777
Q ss_pred CeEEc-CeEeeceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHH-HHhhcCCCcceEeCCCcEe
Q 010922 366 PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKI 443 (497)
Q Consensus 366 ~~~i~-~~~i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~-~~~~~~~~~~~~Ig~~~~i 443 (497)
++.|. ++.|.+++|+++|.|+++.+.+|+||++|+|++++.|.++.+..+ +|| ++++ +| +.||+++.|
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~------~~i~~~~~-~~---~~i~~~~~i 340 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNF------VETKNAKL-NG---VKAGHLSYL 340 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCc------EEEcccEe-cc---ccccccccc
Confidence 88884 588889999999999988999999999999999999988766544 455 3455 77 899999999
Q ss_pred eceEEcCCCEECCCcEEcCCCCCCC-CCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 444 RNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 444 ~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
.+|+||++|.||.++++.+.++... .+.++++++|+++.+ .||+++.|++|++|
T Consensus 341 ~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 341 GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 9999999999999999988754322 244555555555543 36889999988865
No 17
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=2.4e-42 Score=367.58 Aligned_cols=380 Identities=19% Similarity=0.233 Sum_probs=270.7
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|+|||||||.|+||+| .+||+|+||+|+ |||+|+++++.++|+++++|++++..+.+.+++.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--------~~--- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--------RD--- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--------CC---
Confidence 7999999999999996 799999999999 69999999999999999999999998888777742 12
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
+.++.... ..||+++++++..++++ .++|++++||+ +...++.++++.|.+. .+++++.+.+
T Consensus 66 i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~ 129 (451)
T TIGR01173 66 VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP 129 (451)
T ss_pred cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC
Confidence 33332111 25999999999988852 36899999998 4466889999988764 3677776665
Q ss_pred CCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC---C
Q 010922 223 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 299 (497)
Q Consensus 223 ~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~---~ 299 (497)
+ +..|+.+..|++|+|..|.|||...... ...+.+++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~ 190 (451)
T TIGR01173 130 D--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQG 190 (451)
T ss_pred C--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccC
Confidence 4 5569988888889999999997643210 0125789999999999976666654321 2
Q ss_pred CchhhhhHHhhhcc-CceEEEEeccE--EEecCCHHHHHHHHHHhhcCCCC------cc-------cc------CCCCCC
Q 010922 300 NDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA------FH-------FY------DPKTPF 357 (497)
Q Consensus 300 ~d~~~~ii~~li~~-~~v~~~~~~g~--w~dIgt~~~y~~An~~l~~~~~~------~~-------~~------~~~~~i 357 (497)
..+..++++.++++ .++.+|.+.+| |.+++||++|.+++..+..+.+. .. .+ .+...|
T Consensus 191 e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i 270 (451)
T TIGR01173 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEI 270 (451)
T ss_pred cEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEE
Confidence 34567899999887 57999999988 99999999998887655432110 00 01 111222
Q ss_pred CC------CCccCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcc-eEEeCCccccchhHH-HHh
Q 010922 358 YT------SPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASL 427 (497)
Q Consensus 358 ~~------~~~~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~-s~i~~~~~~~~~~~~-~~~ 427 (497)
.+ .+.+++++.|. +|.|.+++|+++|.|+ ++.+.+|+||++|.|++++.|.+ +++.++..++..+|+ .+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 22 22333333442 3555667777777777 46777777777777777777764 444444445555555 345
Q ss_pred hcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCC-CCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 428 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 428 ~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
+++| +.|++++.+.+|.||+++.||+++++.|.++..+ ...++++++|+.+.+ .||++++|++|++|
T Consensus 351 ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 351 IGKG---SKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTV 423 (451)
T ss_pred ECCC---cEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEE
Confidence 5566 6666777777899999999999999987655433 345566666655543 37999999998875
No 18
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.9e-42 Score=367.89 Aligned_cols=380 Identities=17% Similarity=0.211 Sum_probs=277.9
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
.|+|||||||.|+||+ ..+||||+|++|+ |||+|++++|.++|+++|++++++..+.+.+++.. +
T Consensus 5 ~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~-----~------ 69 (456)
T PRK09451 5 AMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD-----E------ 69 (456)
T ss_pred CceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc-----C------
Confidence 5899999999999998 3699999999999 59999999999999999999999988877777631 1
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
.++++... +..||+++++.+..++. ..++||+++||+ +...++.++++.|.+.+ +++++.+.
T Consensus 70 ~~~~i~~~---------~~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~ 133 (456)
T PRK09451 70 PLNWVLQA---------EQLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKL 133 (456)
T ss_pred CcEEEECC---------CCCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEc
Confidence 13333211 12699999999988874 236899999998 55778999998886544 45666665
Q ss_pred CCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC---C
Q 010922 222 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 298 (497)
Q Consensus 222 ~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~---~ 298 (497)
++ ++.||++.. ++++|.+|.|||.....+ ..++++++|+|+|+++.|.+++++..+ .
T Consensus 134 ~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~ 193 (456)
T PRK09451 134 DN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNNAQ 193 (456)
T ss_pred CC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCcccc
Confidence 55 567998754 578999999998643210 013578999999999999877766433 2
Q ss_pred CCchhhhhHHhhhcc-CceEEEE------eccE--EEecCCHHHHHHHHHH--hhc-C----CCCcc------------c
Q 010922 299 SNDFGSEIIPAAIME-HDVQAYI------FRDY--WEDIGTIKSFYEANMA--LTK-E----SPAFH------------F 350 (497)
Q Consensus 299 ~~d~~~~ii~~li~~-~~v~~~~------~~g~--w~dIgt~~~y~~An~~--l~~-~----~~~~~------------~ 350 (497)
.+.+.+++++.++++ .++.+|. +.|| |.|++++++|+++|+. ++. . .|... .
T Consensus 194 ~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~ 273 (456)
T PRK09451 194 GEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVE 273 (456)
T ss_pred CceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCE
Confidence 445778999999988 5899996 4676 7889999999999852 322 1 22111 2
Q ss_pred cCCCCCCCCCCccCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEc-ceEEeCCccccchhHH-HH
Q 010922 351 YDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 426 (497)
Q Consensus 351 ~~~~~~i~~~~~~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~-~s~i~~~~~~~~~~~~-~~ 426 (497)
+++...+...+.+++++.|+ +|.|.+++|+++|+|+ ++.+.+|+||++|.|++++.|. ++.+.++..++..+|+ .+
T Consensus 274 I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~ 353 (456)
T PRK09451 274 IDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKA 353 (456)
T ss_pred EcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeece
Confidence 22333343344555666663 4777778888888887 5777888888888888888886 5555555555666666 56
Q ss_pred hhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCC-CCCCCCCeEEccccEE-----EccCcEECCCccC
Q 010922 427 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGITI-----IMEKATIEDGMVI 497 (497)
Q Consensus 427 ~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~v-----i~~~~~i~~g~~i 497 (497)
.+++| +.+++.+.+.+|.||++|.||+++++.+.++... .+.+++++.|+.+.++ |+++++|++|++|
T Consensus 354 ~i~~~---~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v 427 (456)
T PRK09451 354 RLGKG---SKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTV 427 (456)
T ss_pred eeCCC---CccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEE
Confidence 66666 6777777788899999999999999988655332 2556666666555442 6888888888764
No 19
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=325.87 Aligned_cols=328 Identities=21% Similarity=0.315 Sum_probs=264.9
Q ss_pred ceEEEEecCCC--CCcccCCCCCCCCccccccCcccchhHhHHHHHh-cCCcEEEEEcccChhHHHHHHHhcccCCCccc
Q 010922 64 VAYAVMTSKHP--NEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 140 (497)
Q Consensus 64 ~m~aVIlaaG~--G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~-~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~ 140 (497)
..+||||.+|. ||||+||+.+.||||+||+|+ |||+|.++.|.+ .|..+|+++--|..+.+.+++.+.- + .|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~--~--e~ 76 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ--Q--EF 76 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH--h--hc
Confidence 35899999997 999999999999999999999 599999999988 6999999988888777888775321 1 12
Q ss_pred CCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEee
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 220 (497)
.. .|+.+.+.. ++|||+.|+.+++.|- ....+.|+|+++|..+++++.+|++.|+..+..+|++...
T Consensus 77 ~~-pvrYL~E~~---------plGtaGgLyhFrdqIl---~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 77 KV-PVRYLREDN---------PLGTAGGLYHFRDQIL---AGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTK 143 (407)
T ss_pred cc-chhhhccCC---------CCCcccceeehhhHHh---cCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEE
Confidence 21 245554432 4799999999998885 2456789999999999999999999999999999999999
Q ss_pred eCCCCCCcceEEEEC-CCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhC---
Q 010922 221 VGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY--- 296 (497)
Q Consensus 221 ~~~~~~~~~g~v~~d-~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~--- 296 (497)
+..+.+++||.+..| .+|+|+++.|||.... ++.+++|+|+|++++|..+ ++.+
T Consensus 144 vs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i-~~v~~q~ 201 (407)
T KOG1460|consen 144 VSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAI-AEVYRQR 201 (407)
T ss_pred ecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHH-HHHHHHH
Confidence 887778999999888 5799999999999653 5899999999999998643 2211
Q ss_pred --------------CCCCc---hhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhhcCCCCcc---cc-CCCC
Q 010922 297 --------------PTSND---FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH---FY-DPKT 355 (497)
Q Consensus 297 --------------~~~~d---~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~~~---~~-~~~~ 355 (497)
+...| +..|+++.++.++++++|.-.++|..|-|+-+-+.||..+++++.... +- .+.+
T Consensus 202 ~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt 281 (407)
T KOG1460|consen 202 QDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGT 281 (407)
T ss_pred HhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCC
Confidence 11123 345889999999999999999999999999999999998887542111 11 1122
Q ss_pred CCCCCCccCCCeEEcCeEeeceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcce
Q 010922 356 PFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI 435 (497)
Q Consensus 356 ~i~~~~~~~~~~~i~~~~i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~ 435 (497)
.+.+..+++|+. ++.+.+.+.|| .|..||.+++||+|+.|++|++++. +
T Consensus 282 ----~a~IigdVyIhP----sakvhptAkiG----PNVSIga~vrvg~GvRl~~sIIl~d-------------------~ 330 (407)
T KOG1460|consen 282 ----QAEIIGDVYIHP----SAKVHPTAKIG----PNVSIGANVRVGPGVRLRESIILDD-------------------A 330 (407)
T ss_pred ----CceEEeeeEEcC----cceeCCccccC----CCceecCCceecCCceeeeeeeccC-------------------c
Confidence 233445555544 35677777777 4678999999999999999999988 8
Q ss_pred EeCCCcEeeceEEcCCCEECCCcEEcC
Q 010922 436 GVGRNTKIRNCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 436 ~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 462 (497)
.|.+|+.+-+||||+.+.||+++.+..
T Consensus 331 ei~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 331 EIEENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred EeeccceEEeeeecccccccceeeecc
Confidence 999999999999999999999998875
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.8e-40 Score=350.12 Aligned_cols=384 Identities=16% Similarity=0.186 Sum_probs=267.3
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
.+.|||||||.|+||+ ..+||+|+|++|+ |||+|++++|...|+++|+|++++..+.+.+++. . .+
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~---~~-- 70 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFP-----D---ED-- 70 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcc-----c---cC--
Confidence 5899999999999997 4799999999999 5999999999999999999999998877755542 1 11
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
++++... +..||+++++.+++++++ ...++|++++||+ +...++..+++.|. ++++++++.+.
T Consensus 71 -~~~v~~~---------~~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~ 135 (456)
T PRK14356 71 -ARFVLQE---------QQLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL 135 (456)
T ss_pred -ceEEEcC---------CCCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc
Confidence 3333321 126999999999988863 2347899999998 33567889998875 66788888877
Q ss_pred CCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhC---CC
Q 010922 222 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PT 298 (497)
Q Consensus 222 ~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~---~~ 298 (497)
++ +..||++.. ++|+|.+|.|||+...... ...+.++++|+|+|++++|..+++... +.
T Consensus 136 ~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~ 197 (456)
T PRK14356 136 PD--PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANKS 197 (456)
T ss_pred CC--CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCcccC
Confidence 76 467998876 5789999999986421100 001367899999999999876665432 22
Q ss_pred CCchhhhhHHhhhcc-CceEEEEecc--EEEecCCHHHHHHHHHHhhcCCCC-------------ccccCCCCCCCC---
Q 010922 299 SNDFGSEIIPAAIME-HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESPA-------------FHFYDPKTPFYT--- 359 (497)
Q Consensus 299 ~~d~~~~ii~~li~~-~~v~~~~~~g--~w~dIgt~~~y~~An~~l~~~~~~-------------~~~~~~~~~i~~--- 359 (497)
.+.+.+++++.++++ .++.+|.+.+ +|.+|+||++|.+|+..+..+... -..+++...+.+
T Consensus 198 ~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~ 277 (456)
T PRK14356 198 GEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAE 277 (456)
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCE
Confidence 345677899888765 5799999866 579999999999998766644210 001122211111
Q ss_pred ---------CCccCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEc-ceEEeCCccccchhHH-HH
Q 010922 360 ---------SPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-AS 426 (497)
Q Consensus 360 ---------~~~~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~-~s~i~~~~~~~~~~~~-~~ 426 (497)
.+.+++++.|. +|.|.+++|+++|.|+ .+.+.+|+||++|.|++++.|. ++++.++..++..+|+ .+
T Consensus 278 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~ 357 (456)
T PRK14356 278 IYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKA 357 (456)
T ss_pred EeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeee
Confidence 22333444442 3555667777777777 3666677777777777777776 3444444445555555 45
Q ss_pred hhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCC-CCCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 427 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ-EADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 427 ~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~-~~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
.+.++ +.|++++.+.+|+||+++.||+++++.+.++.. ..+.+++++.++.+.+ .||++++|++|++|
T Consensus 358 ~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v 431 (456)
T PRK14356 358 VLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVI 431 (456)
T ss_pred EecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 66666 677777777788999999999998887654422 1245555555544433 36888888888864
No 21
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.2e-40 Score=351.32 Aligned_cols=375 Identities=20% Similarity=0.221 Sum_probs=266.3
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|+|||||+|.|+||++ .+||||+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+|+. .+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~-----~~------- 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLP-----EW------- 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcc-----cc-------
Confidence 7999999999999974 799999999999 69999999999975 8999999998877766653 21
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
++++... ..+||+++++.+..+++ ..++|++++||. +...++.++++.|+++++++|+++.+.+
T Consensus 64 ~~~~~~~---------~~~g~~~ai~~a~~~l~-----~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~ 129 (448)
T PRK14357 64 VKIFLQE---------EQLGTAHAVMCARDFIE-----PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE 129 (448)
T ss_pred cEEEecC---------CCCChHHHHHHHHHhcC-----cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC
Confidence 2232211 13699999999998885 247899999997 5677899999999999999999998877
Q ss_pred CCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC---C
Q 010922 223 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 299 (497)
Q Consensus 223 ~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~---~ 299 (497)
+ +..||++..| +|+| .+.|||..+... ...+++++|+|+|++++|.+++++..+. .
T Consensus 130 ~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~ 188 (448)
T PRK14357 130 D--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKG 188 (448)
T ss_pred C--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCC
Confidence 5 5679998887 6788 888876543110 0125789999999999987776653321 2
Q ss_pred CchhhhhHHhhhccCceEEEEeccE--EEecCCHHHHHHHHHHhhcC------CCCcc-------ccCCCCCCCCCCccC
Q 010922 300 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE------SPAFH-------FYDPKTPFYTSPRFL 364 (497)
Q Consensus 300 ~d~~~~ii~~li~~~~v~~~~~~g~--w~dIgt~~~y~~An~~l~~~------~~~~~-------~~~~~~~i~~~~~~~ 364 (497)
..+..++++.+ .++.+|.+.+| |.+++++++|..+...+.+. .+... ++++...|..++.+.
T Consensus 189 ~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~ 265 (448)
T PRK14357 189 EYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIY 265 (448)
T ss_pred eEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEc
Confidence 23456777776 34889999998 66777999988776544221 01111 222233333333333
Q ss_pred C------------CeEEc-CeEeeceEECCCCEEcceEEeeeEEcCCcEECCCCEEcc-eEEeCCccccchhHH-HHhhc
Q 010922 365 P------------PTKID-NCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASLLA 429 (497)
Q Consensus 365 ~------------~~~i~-~~~i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~-s~i~~~~~~~~~~~~-~~~~~ 429 (497)
| ++.|. +|.|.+|+|+++|.|..+.+.+|+||+++.|++++.|.+ +++.++..++..+++ .+.++
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig 345 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEc
Confidence 3 33332 345556777777777767778888888888888888865 555555555555555 34555
Q ss_pred CCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCC-CCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 430 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 430 ~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
+| +.+++.+.+.+++||+||.||+++++.+..+... .+.++++++|+.+.+ .||+++.|++|++|
T Consensus 346 ~~---~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 346 EN---TKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred CC---cCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 55 5666666777889999999999998887654333 356666666666653 36888888888765
No 22
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.4e-40 Score=349.41 Aligned_cols=381 Identities=18% Similarity=0.199 Sum_probs=253.1
Q ss_pred CCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccC
Q 010922 62 PGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 141 (497)
Q Consensus 62 ~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~ 141 (497)
++.+.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+++.+ + +
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~-------~ 70 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I-------A 70 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c-------C
Confidence 4568999999999999974 589999999999 69999999999999999999999988888777742 1 1
Q ss_pred CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe-ee-ccCHHHHHHHHHHcCCCeEEEEe
Q 010922 142 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 219 (497)
Q Consensus 142 ~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~ 219 (497)
.. +.++... +..|++++++.++.+++. ..++|++++||+ ++ ..++..+++ |.+.++++++++.
T Consensus 71 ~~-~~~~~~~---------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~ 135 (446)
T PRK14353 71 PD-AEIFVQK---------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGF 135 (446)
T ss_pred CC-ceEEEcC---------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEE
Confidence 01 2222211 126999999999888751 247899999998 44 456777777 5556778888877
Q ss_pred eeCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC--
Q 010922 220 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 297 (497)
Q Consensus 220 ~~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~-- 297 (497)
+..+ +..|+.+.. ++|+|.++.|||...... ....++++|+|+|+++.|.+++++...
T Consensus 136 ~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 195 (446)
T PRK14353 136 RAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDN 195 (446)
T ss_pred EeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccC
Confidence 7655 467888777 568999999998643210 012578999999999887666665432
Q ss_pred -CCCchhhhhHHhhhcc-CceEEEEec-cEEEecCCHHHHHHHHHHhhcCC-------------CCccccCCCCCCCCCC
Q 010922 298 -TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKES-------------PAFHFYDPKTPFYTSP 361 (497)
Q Consensus 298 -~~~d~~~~ii~~li~~-~~v~~~~~~-g~w~dIgt~~~y~~An~~l~~~~-------------~~~~~~~~~~~i~~~~ 361 (497)
....+.++.++.++++ .++.++..+ ++|.||+||++|.+|+..+..+. |...++++...|.+++
T Consensus 196 ~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~ 275 (446)
T PRK14353 196 AKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDV 275 (446)
T ss_pred CCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCC
Confidence 1334567888998876 569999986 57999999999999996443221 1111222223333333
Q ss_pred ccCCCeEEcCeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEc-ceEEeCCccccchhHH-HHhhcCCCcceEeC
Q 010922 362 RFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLAEGKVPIGVG 438 (497)
Q Consensus 362 ~~~~~~~i~~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~-~s~i~~~~~~~~~~~~-~~~~~~~~~~~~Ig 438 (497)
.+.|++.|.. ++.|+++|.|+ ++.+.+|+||++|+|++++.|. ++++.++..++..+++ .+.+.++ +.|+
T Consensus 276 ~i~~~~~I~~----~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~ 348 (446)
T PRK14353 276 VIEPNVVFGP----GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKVN 348 (446)
T ss_pred EECCCCEECC----CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---CEEC
Confidence 3333333321 23444444444 2444445555555555555554 3333333333333333 2233333 7788
Q ss_pred CCcEeeceEEcCCCEECCCcEEcCCCC-------CCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 439 RNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 439 ~~~~i~~~iI~~~~~Ig~~~~i~~~~~-------v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
+++.+.+++||++|.||.++++.+.++ +++.+.++.++.|..++. ||+++.|++|++|
T Consensus 349 ~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~-Ig~~~~ig~~s~v 413 (446)
T PRK14353 349 HLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVT-IGDGAYIASGSVI 413 (446)
T ss_pred CeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCE-ECCCCEECCCCEE
Confidence 888888899999999999998866443 344445555555555533 6888888888764
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8.9e-40 Score=348.81 Aligned_cols=382 Identities=20% Similarity=0.260 Sum_probs=274.3
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
.++|||||+|.|+||++ .+||||+||+|+ |||+|++++|.++|++++++++++..+++.+|+. .+
T Consensus 2 ~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~-----~~------ 66 (458)
T PRK14354 2 NRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLG-----DR------ 66 (458)
T ss_pred CceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc-----CC------
Confidence 36899999999999973 799999999999 6999999999999999999999999888877763 21
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
+.++... +..||++++++++.++++ ..+.|++++||. +...++.++++.|.+.++++|+++.+.
T Consensus 67 -~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~ 132 (458)
T PRK14354 67 -SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA 132 (458)
T ss_pred -cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc
Confidence 2222211 126999999999988852 136799999997 446789999999988888888888776
Q ss_pred CCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC---
Q 010922 222 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 298 (497)
Q Consensus 222 ~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~--- 298 (497)
++ +..|+.+..|++++|..|.|||...... ...+++++|+|+|+++.|.+.+++..+.
T Consensus 133 ~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 193 (458)
T PRK14354 133 EN--PTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDNAQ 193 (458)
T ss_pred CC--CCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccccC
Confidence 55 4568888888889999999987531100 0136789999999998766666553321
Q ss_pred CCchhhhhHHhhhcc-CceEEEEeccE--EEecCCHHHHHHHHHHhhcCC------CCccccCCC-------CCCCCCCc
Q 010922 299 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-------TPFYTSPR 362 (497)
Q Consensus 299 ~~d~~~~ii~~li~~-~~v~~~~~~g~--w~dIgt~~~y~~An~~l~~~~------~~~~~~~~~-------~~i~~~~~ 362 (497)
...+..++++.++++ .++.+|.++++ |.++++++||..|+..+..+. +...+++++ ..+...+.
T Consensus 194 ~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~ 273 (458)
T PRK14354 194 GEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTV 273 (458)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCE
Confidence 234467888888876 57999999876 557779999999886543221 112223332 22222222
Q ss_pred ------------cCCCeEE-cCeEeeceEECCCCEEcceEEeeeEEcCCcEECCCCEEc-ceEEeCCccccchhHH-HHh
Q 010922 363 ------------FLPPTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASL 427 (497)
Q Consensus 363 ------------~~~~~~i-~~~~i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~-~s~i~~~~~~~~~~~~-~~~ 427 (497)
++.++.| .++.|.+++|+++|.|+++.+.+|+||++|.|+++|.|. ++++.++..+...+++ .+.
T Consensus 274 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~ 353 (458)
T PRK14354 274 IEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKST 353 (458)
T ss_pred EeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeE
Confidence 2223333 135556678888888887788889999999999999998 5555555555666666 455
Q ss_pred hcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCC-------CCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 428 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDV-------QEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 428 ~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v-------~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
++++ +.|++.+.+.+|+||+|+.||+++.+.|.++. ++..+.+.++.|..|+ .||++++|++|++|
T Consensus 354 i~~~---~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~-~ig~~~~v~~~~~v 426 (458)
T PRK14354 354 IGEG---TKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPV-TVGDNAYIAAGSTI 426 (458)
T ss_pred ECCC---CEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCc-EECCCCEECCCCEE
Confidence 5666 67777777888999999999999998875443 3333444444444443 36889999988865
No 24
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-39 Score=339.42 Aligned_cols=377 Identities=16% Similarity=0.301 Sum_probs=289.3
Q ss_pred CCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccC
Q 010922 62 PGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 141 (497)
Q Consensus 62 ~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~ 141 (497)
++.+|||++|.-..+||+|+|..+|++|||++|. |||+|+|++|..+|+.+++|.|..++.++.+||.+.-|.....+-
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccce
Confidence 7889999999999999999999999999999999 599999999999999999999999999999999763333322221
Q ss_pred CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHH-----cCCCeEE
Q 010922 142 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 216 (497)
Q Consensus 142 ~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~-----~~a~~tl 216 (497)
.+.|... .....+|++|.... ++...++|++++||++.+++|.+++++|++ +++.||+
T Consensus 101 --v~ti~s~----------~~~S~GDamR~id~-----k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 101 --VVTICSG----------ESRSVGDAMRDIDE-----KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred --EEEEcCC----------CcCcHHHHHHHHHh-----cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 1233221 12589999988642 233468999999999999999999999965 3567899
Q ss_pred EEeeeCCCCC-CcceEEEECC-CCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhh
Q 010922 217 SCAAVGESRA-SDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 294 (497)
Q Consensus 217 ~~~~~~~~~~-~~~g~v~~d~-~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~ 294 (497)
++.+.. .+. .+-.++.+|. +.+++.+.+.... ....+++.++|... +++..+.++.+++|-+++++++. ++.+
T Consensus 164 v~k~~s-t~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~-~~v~vr~DL~dc~IdIcS~~V~s-LF~d 238 (673)
T KOG1461|consen 164 VFKESS-TRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSN-DEVEVRNDLLDCQIDICSPEVLS-LFTD 238 (673)
T ss_pred EEeccc-cccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCC-CcEEEEccCCCceeeEecHhHHH-Hhhh
Confidence 988763 222 2334555664 5788888762221 12345666677666 45667899999999999999997 4555
Q ss_pred hC--CCCCchhhhhHHhhhccCceEEEEecc--EEEecCCHHHHHHHHHHhhcCC-----CCccccCC------CCCCCC
Q 010922 295 RY--PTSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALTKES-----PAFHFYDP------KTPFYT 359 (497)
Q Consensus 295 ~~--~~~~d~~~~ii~~li~~~~v~~~~~~g--~w~dIgt~~~y~~An~~l~~~~-----~~~~~~~~------~~~i~~ 359 (497)
.+ ....||...+|..-+-..+|++|.... |-..+.++++|.-.+.+++.|+ |...+.+. +..||.
T Consensus 239 NFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk 318 (673)
T KOG1461|consen 239 NFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYK 318 (673)
T ss_pred cccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeeccccccc
Confidence 44 345678888887777779999999875 9999999999999999999997 22223331 112222
Q ss_pred CCccCCCeEEc-CeEee-ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceE
Q 010922 360 SPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIG 436 (497)
Q Consensus 360 ~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~ 436 (497)
.|.+.+. .|.+. ++.||.|+.|| ++.|.||+||.+|+||.++.|++|++|.+ |+
T Consensus 319 ----~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~ 375 (673)
T KOG1461|consen 319 ----SPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VT 375 (673)
T ss_pred ----CccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cE
Confidence 3333332 24442 57889999999 67889999999999999999999999988 99
Q ss_pred eCCCcEeeceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 437 VGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 437 Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
||+||.|++|||+++++|++|+++.. |++++.| +|+++|-++..+++|
T Consensus 376 Igdnc~I~~aii~d~v~i~~~~~l~~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 376 IGDNCRIDHAIICDDVKIGEGAILKP------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred ECCCceEeeeEeecCcEeCCCcccCC------------CcEEeee-eEeCCCccccccccc
Confidence 99999999999999999999999863 5677777 445888888777654
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.1e-39 Score=341.64 Aligned_cols=381 Identities=18% Similarity=0.216 Sum_probs=277.6
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|.+||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+|+.+ + + .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~-------~--~ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAH-L-------P--G 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcc-c-------C--C
Confidence 6899999999999985 689999999999 69999999999999999999999988888777742 1 1 1
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
++++... ++.|++++++.++.++++ ..++++|++||. +...++.++++.|.+.++++++++.+.+
T Consensus 68 i~~v~~~---------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 134 (450)
T PRK14360 68 LEFVEQQ---------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP 134 (450)
T ss_pred eEEEEeC---------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 4444321 236999999999888852 236799999998 5577899999999998888888777766
Q ss_pred CCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC---C
Q 010922 223 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 299 (497)
Q Consensus 223 ~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~---~ 299 (497)
+ +..||.+..|++|+|.+|.|||...... ..++++++|+|+|+++.|.+++++..+. .
T Consensus 135 ~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~ 195 (450)
T PRK14360 135 N--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQK 195 (450)
T ss_pred C--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCC
Confidence 5 4569999999899999999998642110 0246899999999999888777664332 3
Q ss_pred CchhhhhHHhhhccCceEEEEeccEE--EecCCHHHHHHHHHHhhcCC------CCccccCC------------------
Q 010922 300 NDFGSEIIPAAIMEHDVQAYIFRDYW--EDIGTIKSFYEANMALTKES------PAFHFYDP------------------ 353 (497)
Q Consensus 300 ~d~~~~ii~~li~~~~v~~~~~~g~w--~dIgt~~~y~~An~~l~~~~------~~~~~~~~------------------ 353 (497)
+.+.++.++.+. ++.+|.+.++| ..+++++++..+...+.... +...++++
T Consensus 196 e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~ 272 (450)
T PRK14360 196 EYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIE 272 (450)
T ss_pred ceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEEC
Confidence 345667777663 35667777764 55999999988876543211 11112222
Q ss_pred -CCCCCCCCccCCCeEE-cCeEeeceEECCCCEEcceEEeeeEEcCCcEECCCCEEc-ceEEeCCccccchhHH-HHhhc
Q 010922 354 -KTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELK-DTVMLGADYYQTESEI-ASLLA 429 (497)
Q Consensus 354 -~~~i~~~~~~~~~~~i-~~~~i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~-~s~i~~~~~~~~~~~~-~~~~~ 429 (497)
.+.+.+.+.+++++.| .++.|.+++|+++|.|+.+.+.+|+||++|+|+++|.|. ++++.++..++..+++ .+.+.
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~ 352 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLG 352 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccC
Confidence 2222233344555555 346667788888888887788899999999999999997 5666666666666665 55666
Q ss_pred CCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCC-CCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 430 EGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 430 ~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
++ +.|++++.+.+|+|+++|.||+++++.+.+++.. ...+++++.|+.+.+ .||+++.|++|+++
T Consensus 353 ~~---~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v 423 (450)
T PRK14360 353 EG---SKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTI 423 (450)
T ss_pred CC---cEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEE
Confidence 66 6777777777889999999999999987555443 344555555544432 25777777777754
No 26
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.1e-39 Score=307.69 Aligned_cols=233 Identities=21% Similarity=0.342 Sum_probs=200.2
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccCh-hHHHHHHHhcccCCCcccCCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~-~~l~~~l~~~y~~~g~~~~~~ 143 (497)
|+|||||+|.||||+|+|...||+|+||.++ |||+|+|+.|..+||++|.||++++. ..++++ +++|+.||.
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l-----lGdgs~~gv- 73 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL-----LGDGSDFGV- 73 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhh-----hcCccccCc-
Confidence 7999999999999999999999999999999 59999999999999999999999865 334333 478888984
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCC
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 223 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 223 (497)
.+-...|. .+.|.|+|+..+.+|+. .++|++..||.++..++.++++.+.+++.++++++.++++
T Consensus 74 --~itY~~Q~-------~p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d 138 (286)
T COG1209 74 --DITYAVQP-------EPDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD 138 (286)
T ss_pred --ceEEEecC-------CCCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC
Confidence 33333343 24799999999999997 3899999999998779999999999989999999999998
Q ss_pred CCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC--CCc
Q 010922 224 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 301 (497)
Q Consensus 224 ~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~--~~d 301 (497)
|++||+++.|++|+|+.+.|||..|. |+++-+|+|+|+++++. .++...|+ .+.
T Consensus 139 --P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGEl 194 (286)
T COG1209 139 --PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGEL 194 (286)
T ss_pred --cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCce
Confidence 77899999999999999999999884 58999999999999997 56766664 334
Q ss_pred hhhhhHHhhhccCc-eEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010922 302 FGSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTK 343 (497)
Q Consensus 302 ~~~~ii~~li~~~~-v~~~~~~g~w~dIgt~~~y~~An~~l~~ 343 (497)
-.+++++.+++++. +......|+|.|.||+++|++||..+..
T Consensus 195 EITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 195 EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred EehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 46789999998854 5555678899999999999999988775
No 27
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=6.8e-38 Score=315.28 Aligned_cols=241 Identities=17% Similarity=0.231 Sum_probs=190.7
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-c--------
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F-------- 134 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~-------- 134 (497)
.|+|||||||.||||+|+|..+||||+||+|+ |+|+|+++++.++|+++|+|+++|.++++.+|+...+ +
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhc
Confidence 68999999999999999999999999999999 5999999999999999999999999999999885322 0
Q ss_pred --------CCCcccCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeec--------c
Q 010922 135 --------GNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------M 198 (497)
Q Consensus 135 --------~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~--------~ 198 (497)
..+.+++ +.+....| ++++|||+||+++.+++++ ++|+|++||++++ +
T Consensus 82 ~~~~~~~~~~~~~~~---~~i~~~~q-------~~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~~~ 145 (297)
T TIGR01105 82 KRQLLAEVQSICPPG---VTIMNVRQ-------AQPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPLRY 145 (297)
T ss_pred chhhhhhhhhcCCCC---ceEEEeeC-------CCcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccchh
Confidence 0111122 22222222 2458999999999999862 6899999999987 5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEEE----CCCCC---EEEEeecCCccccccccccccccCCCcccccc
Q 010922 199 DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI----DNMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 271 (497)
Q Consensus 199 dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~----d~~g~---V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~ 271 (497)
++.++++.|.++++.+++ +.++.. .++.||++.. |++|+ |.+|.|||..+.. .
T Consensus 146 ~l~~li~~~~~~~~~~~~-~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~ 205 (297)
T TIGR01105 146 NLAAMIARFNETGRSQVL-AKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------L 205 (297)
T ss_pred HHHHHHHHHHHhCCcEEE-EEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc------------------C
Confidence 899999999877776644 444432 2678999998 44564 5899999975421 0
Q ss_pred CCccceeeEEEEcHHHHHHHHhhhCCC--CCchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhh
Q 010922 272 CPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 272 ~~~l~~~Giyif~~~vL~~ll~~~~~~--~~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~ 342 (497)
.++++++|+|+|++++|. .++...+. .+...+++++.+++++++.+|.++|+|+|||+|++|++||.++.
T Consensus 206 ~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 206 DSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred CcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 247899999999999987 45553332 23346799999999999999999999999999999999998864
No 28
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=8.5e-38 Score=306.31 Aligned_cols=240 Identities=30% Similarity=0.521 Sum_probs=192.3
Q ss_pred EEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEE-EEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 66 YAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 66 ~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I-~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
+|||||||.||||+|+|.++||||+|++|++|||+|+|++|.++|++++ +|+++++.+.+.+|+...+ .|+. .
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~-----~~~~-~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY-----KFGV-K 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG-----GGTE-E
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc-----cccc-c
Confidence 6999999999999999999999999999995599999999999999995 5555577788888885322 2331 1
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCC-CCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRN-IENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 223 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~-~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 223 (497)
++++.... ..|||+||+++..++.. .. .++|+|++||++++.++.++++.|+++++++++++...+.
T Consensus 75 i~~i~~~~---------~~Gta~al~~a~~~i~~---~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (248)
T PF00483_consen 75 IEYIVQPE---------PLGTAGALLQALDFIEE---EDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV 142 (248)
T ss_dssp EEEEEESS---------SSCHHHHHHHTHHHHTT---SEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES
T ss_pred ceeeeccc---------ccchhHHHHHHHHHhhh---ccccceEEEEeccccccchhhhHHHhhhccccccccccccccc
Confidence 34332221 15999999999999973 11 2359999999999999999999999998855444444333
Q ss_pred CCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHh--hhCCCCCc
Q 010922 224 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSND 301 (497)
Q Consensus 224 ~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~--~~~~~~~d 301 (497)
+.++.||++..|++|+|.+|.|||..+.. +.++++|+|+|++++|..+++ +......+
T Consensus 143 ~~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~ 202 (248)
T PF00483_consen 143 EDPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGED 202 (248)
T ss_dssp SGGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSH
T ss_pred cccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhh
Confidence 34778999999999999999999997531 368999999999999987654 22334667
Q ss_pred hhhhhHHhhhccC-ceEEEEecc--EEEecCCHHHHHHHHHHhhc
Q 010922 302 FGSEIIPAAIMEH-DVQAYIFRD--YWEDIGTIKSFYEANMALTK 343 (497)
Q Consensus 302 ~~~~ii~~li~~~-~v~~~~~~g--~w~dIgt~~~y~~An~~l~~ 343 (497)
+..++++.+++++ .+.+|.+++ +|.|||||++|++||+.+++
T Consensus 203 ~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 203 FLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 8899999999986 556889998 79999999999999999875
No 29
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-38 Score=312.65 Aligned_cols=350 Identities=17% Similarity=0.261 Sum_probs=248.6
Q ss_pred CCCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccC-hhHHHHHHHhcccCCCcc
Q 010922 61 KPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTN 139 (497)
Q Consensus 61 ~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~-~~~l~~~l~~~y~~~g~~ 139 (497)
.+-.+|||++|+|.||||.-++...|||||||+|+ |||+|+|++|.++|+++|.|++... ...++..|...+ ....+
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~~~ 83 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLKKR 83 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccccc
Confidence 34578999999999999999999999999999999 5999999999999999999999874 345777775433 11111
Q ss_pred cCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEe
Q 010922 140 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 219 (497)
Q Consensus 140 ~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~ 219 (497)
. ..|++-...+. -.|||++|+...+.++ .+||||++||.+.++++-.++++++..++...+++.
T Consensus 84 -~-~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~ 147 (433)
T KOG1462|consen 84 -P-DYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIG 147 (433)
T ss_pred -c-cEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhc
Confidence 0 11332211111 1599999999988886 379999999999999999999999987765444443
Q ss_pred eeCC------C---CCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHH
Q 010922 220 AVGE------S---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 290 (497)
Q Consensus 220 ~~~~------~---~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ 290 (497)
.... . ......++-++++..=+.|..... .....+.+..++|+..|. +...+++.++.+|+|+.+++.
T Consensus 148 ~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~-d~~~~l~i~~slL~~~pr-ltl~t~L~dahiY~~k~~v~d- 224 (433)
T KOG1462|consen 148 NALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSA-DEEEPLVIRKSLLWNHPR-LTLTTKLVDAHIYVFKHWVID- 224 (433)
T ss_pred cccccccccCcccccccccceeeeccccceeEEeecCC-cCCCceehhhhhhhcCCc-eEEeccccceeeeeeHHHHHH-
Confidence 2111 0 112234455555433233433221 122345677778887775 456789999999999999997
Q ss_pred HHhhhCCCCCchhhhhHHhhhcc---------------------------------CceEEEEec--cEEEecCCHHHHH
Q 010922 291 LLRWRYPTSNDFGSEIIPAAIME---------------------------------HDVQAYIFR--DYWEDIGTIKSFY 335 (497)
Q Consensus 291 ll~~~~~~~~d~~~~ii~~li~~---------------------------------~~v~~~~~~--g~w~dIgt~~~y~ 335 (497)
+|.+. ++..+|-.+++|.++++ -++++|.+. .-+..++|.-.|+
T Consensus 225 ~l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~ 303 (433)
T KOG1462|consen 225 LLSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYM 303 (433)
T ss_pred HHhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHH
Confidence 45532 23345555666666543 234444443 4577899999999
Q ss_pred HHHH--HhhcCCCCccccCCCCCCCCCCccCCCeEEcCeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEE
Q 010922 336 EANM--ALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVM 412 (497)
Q Consensus 336 ~An~--~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i 412 (497)
++|+ .+.+-.|...+.+ + .++.-...=.+++|+++|.|+ ++.|+.|+||.+|.||++++|.+|++
T Consensus 304 eiN~~k~~~~l~~e~~~~k-------~-----~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSil 371 (433)
T KOG1462|consen 304 EINRDKKLKKLCSEAKFVK-------N-----YVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSIL 371 (433)
T ss_pred hhhHHHHHHHhcccccccc-------c-----hhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEe
Confidence 9994 3333222211111 1 011111111279999999999 68999999999999999999999999
Q ss_pred eCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCC
Q 010922 413 LGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 463 (497)
|++ |.||+|+.|+|||||.+|.||+++.+.||
T Consensus 372 m~n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 372 MDN-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred ecC-------------------cEecCCcceecceecccceecCCCeeeee
Confidence 999 99999999999999999999999999985
No 30
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=7.2e-37 Score=308.29 Aligned_cols=244 Identities=16% Similarity=0.216 Sum_probs=192.9
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-cC------
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG------ 135 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~~------ 135 (497)
..|+|||||||.||||+|+|..+||||+||+|+ |+|+|+|++|.++||++|+|++++..+++.+|+...| +.
T Consensus 2 ~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~ 80 (297)
T PRK10122 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQR 80 (297)
T ss_pred CceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhc
Confidence 479999999999999999999999999999999 6999999999999999999999999999999995322 10
Q ss_pred ----------CCcccCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeec--------
Q 010922 136 ----------NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR-------- 197 (497)
Q Consensus 136 ----------~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~-------- 197 (497)
....++ +++....|. .++||++|++++.+++. .++|+|++||++++
T Consensus 81 ~k~~~l~~~~~~~~~~---~~i~~~~q~-------~~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~~ 144 (297)
T PRK10122 81 VKRQLLAEVQSICPPG---VTIMNVRQG-------QPLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPLR 144 (297)
T ss_pred chhhhHHhhhhccCCC---ceEEEeecC-------CcCchHHHHHHHHHHcC------CCCEEEEECCeeccCccccccc
Confidence 000122 222222222 13799999999999985 26899999999986
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEEEC----CCC---CEEEEeecCCccccccccccccccCCCccccc
Q 010922 198 MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 270 (497)
Q Consensus 198 ~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d----~~g---~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~ 270 (497)
.|+.++++.|.+++++++++ ..... .++.||++.+| ++| +|++|.|||..+..
T Consensus 145 ~dl~~li~~h~~~~~~~~~~-~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~------------------ 204 (297)
T PRK10122 145 YNLAAMIARFNETGRSQVLA-KRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------ 204 (297)
T ss_pred hhHHHHHHHHHHhCCcEEEE-EECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc------------------
Confidence 58999999998888775444 44322 36789999986 355 78999999975421
Q ss_pred cCCccceeeEEEEcHHHHHHHHhhhCCC--CCchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHh-hcC
Q 010922 271 KCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL-TKE 344 (497)
Q Consensus 271 ~~~~l~~~Giyif~~~vL~~ll~~~~~~--~~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l-~~~ 344 (497)
..++++++|+|+|++++|..+ ....+. ...+.+++++.+++++++.+|.++|+|.|||+|++|++|+.++ +++
T Consensus 205 ~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 LDSDLMAVGRYVLSADIWPEL-ERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred CCccEEEEEEEEECHHHHHHH-HhCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 024689999999999998754 443332 3355779999999999999999999999999999999999998 443
No 31
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=6.6e-37 Score=302.66 Aligned_cols=235 Identities=19% Similarity=0.291 Sum_probs=192.8
Q ss_pred EEEecCC--CCCcccCCCCCCCCccccccCcccchhHhHHHHHh-cCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 67 AVMTSKH--PNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 67 aVIlaaG--~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~-~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
||||||| .|+||+|+|..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.... ..++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~----~~~~~- 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ----QEFNV- 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc----cccCc-
Confidence 6999999 8999999999999999999999 699999999999 6999999999999999999995311 11221
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCC
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 223 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 223 (497)
.+.++. +. ..+||+++++++.++++. ...++|+|++||++++.|+.++++.|+++++++|+++.+++.
T Consensus 75 ~i~~~~--~~-------~~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 75 PIRYLQ--EY-------KPLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred eEEEec--CC-------ccCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 233322 11 126999999999988852 124689999999999999999999999999999999988754
Q ss_pred CCCCcceEEEEC-CCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC-----
Q 010922 224 SRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP----- 297 (497)
Q Consensus 224 ~~~~~~g~v~~d-~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~----- 297 (497)
+.++.||++..| ++|+|.+|.|||..+. +.++++|+|+|++++|.. +....+
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~-i~~~~~~~~~e 200 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDT-IKKAFQSRQQE 200 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHH-Hhhhccccccc
Confidence 446789999988 6789999999987442 368999999999999864 443221
Q ss_pred -------------CCCchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHh
Q 010922 298 -------------TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 341 (497)
Q Consensus 298 -------------~~~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l 341 (497)
...++..++++.++++.++.+|.++|||.||||+++|++||+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 201 AQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 11345679999999999999999999999999999999999863
No 32
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.8e-36 Score=295.11 Aligned_cols=232 Identities=21% Similarity=0.337 Sum_probs=195.2
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|++||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++++++.+|+. .+ .. .++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~-~~-~~--~~~--- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK-EY-EK--KLG--- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh-cc-cc--cCC---
Confidence 7999999999999999999999999999999 6999999999999999999999999999999985 22 11 233
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 224 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 224 (497)
++++...+. ...||+++++.+..+++. ..++|+|++||++++.++.++++.|+++++++|+++.+.++
T Consensus 73 ~~i~~~~~~-------~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (233)
T cd06425 73 IKITFSIET-------EPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED- 140 (233)
T ss_pred eEEEeccCC-------CCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC-
Confidence 344432221 136999999999988851 23689999999999999999999999999999999988765
Q ss_pred CCCcceEEEECC-CCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCchh
Q 010922 225 RASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 303 (497)
Q Consensus 225 ~~~~~g~v~~d~-~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~~ 303 (497)
++.||++.+|+ +|+|+++.|||..+. ++++++|+|+|++++|..+ .. ...++.
T Consensus 141 -~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~~ 194 (233)
T cd06425 141 -PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSIE 194 (233)
T ss_pred -ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---Ccccch
Confidence 56799999987 789999999987542 3678999999999999654 33 223445
Q ss_pred hhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhh
Q 010922 304 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 304 ~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~ 342 (497)
.++++.++++.++.+|.++|+|.|||||++|++|+..++
T Consensus 195 ~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 195 KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 688999999999999999999999999999999998764
No 33
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=2.1e-35 Score=288.92 Aligned_cols=231 Identities=19% Similarity=0.291 Sum_probs=189.1
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccC-hhHHHHHHHhcccCCCcccCCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~-~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|++++. .+++.+|+. .+..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~-----~~~~~~-- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLG-----DGSDLG-- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHh-----cccccC--
Confidence 7999999999999999999999999999999 6999999999999999999998765 467777774 233454
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-ccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
+++....+. ...||++|++.+..+++ .++|+|++||+++ +.++.++++.|.++++++|+++.+++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
T cd02538 73 -IRITYAVQP-------KPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN 138 (240)
T ss_pred -ceEEEeeCC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 333322221 13699999999998885 2689999999765 66899999999988899999988876
Q ss_pred CCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC--CC
Q 010922 223 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 300 (497)
Q Consensus 223 ~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~--~~ 300 (497)
+ ++.||++.+|++|+|++|.|||..+. +.++++|+|+|++++|. .+++..+. ..
T Consensus 139 ~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~ 194 (240)
T cd02538 139 D--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGE 194 (240)
T ss_pred c--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCe
Confidence 5 56799999998899999999987542 35789999999999885 56543322 23
Q ss_pred chhhhhHHhhhccCceEEEEec--cEEEecCCHHHHHHHHHHh
Q 010922 301 DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMAL 341 (497)
Q Consensus 301 d~~~~ii~~li~~~~v~~~~~~--g~w~dIgt~~~y~~An~~l 341 (497)
.+.+++++.+++++++.++.+. |||.|||||++|++||..+
T Consensus 195 ~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 195 LEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred EEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 3456899999998888888776 9999999999999999865
No 34
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=3.4e-35 Score=295.04 Aligned_cols=234 Identities=18% Similarity=0.312 Sum_probs=189.1
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEccc-ChhHHHHHHHhcccCCCcccC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFG 141 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~-~~~~l~~~l~~~y~~~g~~~~ 141 (497)
+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++.+ ..+.+.+|+. ++..|+
T Consensus 2 ~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~-----~g~~~g 75 (292)
T PRK15480 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG-----DGSQWG 75 (292)
T ss_pred CceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc-----CccccC
Confidence 579999999999999999999999999999999 699999999999999999987664 4566776663 444566
Q ss_pred CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-ccCHHHHHHHHHHcCCCeEEEEee
Q 010922 142 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 142 ~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~ 220 (497)
.. ++++. |. .+.||++|++.+.+++.+ +++++++||+++ +.|+.++++.|.++++++|+++.+
T Consensus 76 ~~-i~y~~--q~-------~~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~ 139 (292)
T PRK15480 76 LN-LQYKV--QP-------SPDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYH 139 (292)
T ss_pred ce-eEEEE--CC-------CCCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEE
Confidence 32 23222 21 136999999999999852 568999999765 899999999999888899999888
Q ss_pred eCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC--
Q 010922 221 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT-- 298 (497)
Q Consensus 221 ~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~-- 298 (497)
+++ +++||++.+|++|+|++|.|||..+. ++++++|+|+|+++++. .++...+.
T Consensus 140 v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~~~ 195 (292)
T PRK15480 140 VND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPSAR 195 (292)
T ss_pred cCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCCCC
Confidence 866 67899999998899999999997542 47899999999999886 45543332
Q ss_pred CCchhhhhHHhhhccCceEE-EEecc-EEEecCCHHHHHHHHHHhh
Q 010922 299 SNDFGSEIIPAAIMEHDVQA-YIFRD-YWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 299 ~~d~~~~ii~~li~~~~v~~-~~~~g-~w~dIgt~~~y~~An~~l~ 342 (497)
.+...+++++.+++++++.. +...| +|.|+||+++|.+|+..+.
T Consensus 196 ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 196 GELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 22235789999998877644 56678 5999999999999997765
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=3.8e-35 Score=294.16 Aligned_cols=231 Identities=21% Similarity=0.353 Sum_probs=187.8
Q ss_pred EEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcc-cChhHHHHHHHhcccCCCcccCCCe
Q 010922 66 YAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 66 ~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~-~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++ +..+.+.+|+ +++..|+.
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~l-----g~g~~~g~-- 72 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLL-----GDGSQWGV-- 72 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHh-----ccccccCc--
Confidence 589999999999999999999999999999 69999999999999999998886 5556676666 34556663
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCee-eccCHHHHHHHHHHcCCCeEEEEeeeCC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGE 223 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 223 (497)
++....|. .+.||++|++.+.++++ .+++++++||++ ++.++.++++.|.++++++|+++.++++
T Consensus 73 -~i~~~~q~-------~~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~ 138 (286)
T TIGR01207 73 -NLSYAVQP-------SPDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD 138 (286)
T ss_pred -eEEEEEcc-------CCCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC
Confidence 33222221 13799999999999986 267899999975 5889999999999888899999988876
Q ss_pred CCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC--CCc
Q 010922 224 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 301 (497)
Q Consensus 224 ~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~--~~d 301 (497)
+++||++..|++|+|++|.|||..+. ++++++|+|+|+++++. .+++..++ .+.
T Consensus 139 --p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 194 (286)
T TIGR01207 139 --PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGEL 194 (286)
T ss_pred --HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcE
Confidence 56899999998899999999997542 46899999999999875 55554332 233
Q ss_pred hhhhhHHhhhccCceEEEEe-ccE-EEecCCHHHHHHHHHHhh
Q 010922 302 FGSEIIPAAIMEHDVQAYIF-RDY-WEDIGTIKSFYEANMALT 342 (497)
Q Consensus 302 ~~~~ii~~li~~~~v~~~~~-~g~-w~dIgt~~~y~~An~~l~ 342 (497)
+.+++++.+++++++..+.+ .|+ |.|+|||++|++||..+-
T Consensus 195 eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 195 EITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred eHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 56799999999877666655 676 999999999999997654
No 36
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=5.1e-35 Score=290.59 Aligned_cols=240 Identities=21% Similarity=0.271 Sum_probs=189.5
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-cC-----CCc
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 138 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~~-----~g~ 138 (497)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++++++.+|+...+ +. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 7999999999999999999999999999999 6999999999999999999999999999999995432 10 000
Q ss_pred c----------cCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeecc---CHHHHHH
Q 010922 139 N----------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQ 205 (497)
Q Consensus 139 ~----------~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~---dl~~ll~ 205 (497)
. .+ ..+.++. + ++.+||+++|+++..+++ .++|+|++||+++.. ++.++++
T Consensus 80 ~~~~~~~~~~~~~-~~i~~~~--~-------~~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~ 143 (267)
T cd02541 80 TDLLEEVRIISDL-ANIHYVR--Q-------KEPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIE 143 (267)
T ss_pred HHHhhhhhcccCC-ceEEEEE--c-------CCCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHH
Confidence 0 01 0122221 1 234799999999998885 278999999998864 4999999
Q ss_pred HHHHcCCCeEEEEeeeCCCCCCcceEEEECC----CCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEE
Q 010922 206 SHVDRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 281 (497)
Q Consensus 206 ~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~----~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy 281 (497)
.|.+++++ ++++.+++.+.+..||++..|+ .++|.+|.|||..... .+.++++|+|
T Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giy 203 (267)
T cd02541 144 AYEKTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRY 203 (267)
T ss_pred HHHHhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEE
Confidence 99887775 4555555543467899999985 2589999999874211 2368899999
Q ss_pred EEcHHHHHHHHhhhCC--CCCchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhh
Q 010922 282 VFKKDVLFKLLRWRYP--TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 282 if~~~vL~~ll~~~~~--~~~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~ 342 (497)
+|++++|..+ ..... ....+..++++.+++++++.+|.++|||.|||||++|++||++|.
T Consensus 204 i~~~~~~~~l-~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 204 VLTPDIFDIL-ENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred EcCHHHHHHH-HhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9999988754 33211 233456789999999899999999999999999999999999875
No 37
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=1.4e-35 Score=293.32 Aligned_cols=239 Identities=19% Similarity=0.240 Sum_probs=185.9
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-cC-----CCc
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 138 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~~-----~g~ 138 (497)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+...| +. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 7899999999999999999999999999999 6999999999999999999999999999999996332 10 100
Q ss_pred ccC-------CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeecc---CHHHHHHHHH
Q 010922 139 NFG-------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 208 (497)
Q Consensus 139 ~~~-------~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~---dl~~ll~~h~ 208 (497)
.|. ...+.+....+ ++..||+++++++..++. .++|+|++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00011111111 234799999999998884 378999999998854 7999999999
Q ss_pred HcCCCeEEEEeeeCCCCCCcceEEEECC----CCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEc
Q 010922 209 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 284 (497)
Q Consensus 209 ~~~a~~tl~~~~~~~~~~~~~g~v~~d~----~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~ 284 (497)
++++++ +++..++.+.+++||++..|. +++|++|.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888876 555555544467899999862 3699999999853211 1367899999999
Q ss_pred HHHHHHHHhhhCC-CCCchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHH
Q 010922 285 KDVLFKLLRWRYP-TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 337 (497)
Q Consensus 285 ~~vL~~ll~~~~~-~~~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~A 337 (497)
+++|..+.+.... ....+..++++.+++++++++|.++|||.|||||++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 9988765332221 1234567899999999999999999999999999999875
No 38
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=1.3e-34 Score=292.40 Aligned_cols=245 Identities=21% Similarity=0.270 Sum_probs=194.0
Q ss_pred CCCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-cCCC--
Q 010922 61 KPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG-- 137 (497)
Q Consensus 61 ~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~~~g-- 137 (497)
..++|+|||+|||.|+||+|+|..+||||+||+|+ |+|+|+|++|.++|+++|+|+++++.+++.+|+...+ |+..
T Consensus 5 ~~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~ 83 (302)
T PRK13389 5 NTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLE 83 (302)
T ss_pred cccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhh
Confidence 34589999999999999999999999999999999 6999999999999999999999999999999985322 2100
Q ss_pred cccCC----C-------eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeec--------c
Q 010922 138 TNFGD----G-------FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------M 198 (497)
Q Consensus 138 ~~~~~----~-------~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~--------~ 198 (497)
.++.. . ...+....| ....||++|++++..++. .++|+|++||++++ .
T Consensus 84 ~~~~~~~~~e~~~i~~~~~~i~~~~q-------~~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~ 150 (302)
T PRK13389 84 KRVKRQLLDEVQSICPPHVTIMQVRQ-------GLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQD 150 (302)
T ss_pred hhhhhHHHHhhhhccccCceEEEeec-------CCCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccc
Confidence 00000 0 011111111 234799999999998875 37899999999874 7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEEECC-------CCCEEEEeecCCccccccccccccccCCCcccccc
Q 010922 199 DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 271 (497)
Q Consensus 199 dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~-------~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~ 271 (497)
|+.++++.|.+++++ |+++.++++ +..||++..|+ +++|.+|.|||.....
T Consensus 151 dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~------------------- 208 (302)
T PRK13389 151 NLAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA------------------- 208 (302)
T ss_pred cHHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------
Confidence 999999999888876 677777754 56899998863 3579999999974321
Q ss_pred CCccceeeEEEEcHHHHHHHHhhhCC--CCCchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhh
Q 010922 272 CPYVASMGVYVFKKDVLFKLLRWRYP--TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 272 ~~~l~~~Giyif~~~vL~~ll~~~~~--~~~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~ 342 (497)
.++++++|+|+|++++|. +++...+ ..+.+.+++++.++++.++.+|.++|+|.|||||++|++|++++-
T Consensus 209 ~s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 209 PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred CccEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 136899999999999984 6665432 234567899999999999999999999999999999999999874
No 39
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=1.2e-34 Score=286.27 Aligned_cols=233 Identities=16% Similarity=0.237 Sum_probs=189.7
Q ss_pred EEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-cCCCcccC--C
Q 010922 66 YAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFG--D 142 (497)
Q Consensus 66 ~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~~~g~~~~--~ 142 (497)
+|||||||.|+||+|+|..+||||+||+|+| ||+|+++++.++|+++|+|+++|+.+++.+|+.+.. .+.+.++. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~p-ii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKP-ILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEE-HHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 5899999999999999999999999999995 999999999999999999999999999999985311 11111110 0
Q ss_pred ------------CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHc
Q 010922 143 ------------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 210 (497)
Q Consensus 143 ------------~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~ 210 (497)
..+++.. + ..++||++||++++.+++ .++|+|++||+++++|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~-------~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--T-------GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--c-------CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0011111 1 113799999999998885 378999999999999999999999999
Q ss_pred CCCeEEEEeeeCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHH
Q 010922 211 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 290 (497)
Q Consensus 211 ~a~~tl~~~~~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ 290 (497)
++++|+++.+ + +..||++..|+ ++|.+|.|||..+ +.++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999987652 2 45799999885 6999999998532 25789999999999984
Q ss_pred HHhhhCCCCCchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhhcCC
Q 010922 291 LLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 345 (497)
Q Consensus 291 ll~~~~~~~~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~ 345 (497)
.+++. ..++.+++++.+++++++.+|.++|||.|||||++|.+++..+.+..
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 56542 34677899999999999999999999999999999999999887643
No 40
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=3.1e-33 Score=272.31 Aligned_cols=232 Identities=22% Similarity=0.328 Sum_probs=191.6
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+.+.+|+.+ +.+|+..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~-----~~~~~~~- 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGD-----GSRFGVR- 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcc-----hhhcCCe-
Confidence 7999999999999999999999999999999 69999999999999999999999988888888843 2233321
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 224 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 224 (497)
+.++... +..||+++++.+..++. .++|++++||++++.++.++++.|.++++++++++.+.++
T Consensus 74 i~~~~~~---------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (236)
T cd04189 74 ITYILQE---------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED- 137 (236)
T ss_pred EEEEECC---------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC-
Confidence 3333221 23699999999998874 3689999999999999999999999999999999988765
Q ss_pred CCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC--CCch
Q 010922 225 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 302 (497)
Q Consensus 225 ~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~--~~d~ 302 (497)
+..|+++..|+ ++|.++.|||..+. +..+++|+|+|++++|.. ++...+. ...+
T Consensus 138 -~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~~ 193 (236)
T cd04189 138 -PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDA-ISRLKPSWRGELE 193 (236)
T ss_pred -cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHH-HHhcCCCCCCeEE
Confidence 46789888875 59999999986432 357899999999999864 4433221 2344
Q ss_pred hhhhHHhhhcc-CceEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010922 303 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 343 (497)
Q Consensus 303 ~~~ii~~li~~-~~v~~~~~~g~w~dIgt~~~y~~An~~l~~ 343 (497)
..++++.++++ .++.+|.++++|.|||||++|.+||+.+++
T Consensus 194 ~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 194 ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 57899999876 579999999999999999999999999875
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=7.6e-34 Score=274.18 Aligned_cols=219 Identities=17% Similarity=0.242 Sum_probs=181.9
Q ss_pred EEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeE
Q 010922 66 YAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 145 (497)
Q Consensus 66 ~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~V 145 (497)
+|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.. ..|+ +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~------~~~~---~ 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD------SRFG---L 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc------ccCC---c
Confidence 589999999999999999999999999999 69999999999999999999999999999998853 1243 3
Q ss_pred EEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHH--HcCCCeEEEEeeeCC
Q 010922 146 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV--DRDADITISCAAVGE 223 (497)
Q Consensus 146 eIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~--~~~a~~tl~~~~~~~ 223 (497)
.+....+. .+..||+++++.++.+++ .++|+|++||++++.|+.++++.|. +.++.+|+...+.+.
T Consensus 71 ~i~~~~~~------~~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (221)
T cd06422 71 RITISDEP------DELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG 138 (221)
T ss_pred eEEEecCC------CcccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC
Confidence 33332221 023699999999998885 2789999999999999999999998 456666666655543
Q ss_pred CCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCchh
Q 010922 224 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 303 (497)
Q Consensus 224 ~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~~ 303 (497)
...||.+..|++|+|..+.|||.. +++++|+|+|++++|..+.+. ....
T Consensus 139 --~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~ 187 (221)
T cd06422 139 --HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSL 187 (221)
T ss_pred --CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccH
Confidence 567999999988999999988752 468999999999999764322 2346
Q ss_pred hhhHHhhhccCceEEEEeccEEEecCCHHHHHHH
Q 010922 304 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 337 (497)
Q Consensus 304 ~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~A 337 (497)
+++++.+++++++.+|.+.|||.|||||++|.+|
T Consensus 188 ~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 188 NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 6899999999999999999999999999999875
No 42
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=2.8e-33 Score=276.24 Aligned_cols=241 Identities=14% Similarity=0.205 Sum_probs=190.3
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC----
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD---- 142 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~---- 142 (497)
|||||||.|+||+|+|..+||||+||+|+| ||+|+++++.++|+++|+|+++|+.+++.+|+.+.+ ..+..|..
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p-~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 78 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRP-ILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYF-LHNSDVTIDLGT 78 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEE-HHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhh-hhcCceeEeecc
Confidence 699999999999999999999999999995 999999999999999999999999999999986432 11112210
Q ss_pred CeEEEeeCccCCCC---CCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEe
Q 010922 143 GFVEVLAATQTPGE---SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 219 (497)
Q Consensus 143 ~~VeIl~~~~~~~e---~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~ 219 (497)
..+.++.....+-. ..+...+||++++++++.++.+ .++|+|++||++++.|+.++++.|.+.++++|+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~ 153 (253)
T cd02524 79 NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAV 153 (253)
T ss_pred cceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEe
Confidence 11222221000000 0000126899999999988851 268999999999999999999999999999998776
Q ss_pred eeCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCC
Q 010922 220 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 299 (497)
Q Consensus 220 ~~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~ 299 (497)
. . ..+||.+.+|++|+|..+.|||..+ +.++++|+|+|++++|.. ++.. .
T Consensus 154 ~--~--~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~-l~~~---~ 203 (253)
T cd02524 154 H--P--PGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDY-IDGD---D 203 (253)
T ss_pred c--C--CCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHh-hccc---c
Confidence 3 1 4579999999899999999998743 146899999999999864 4432 3
Q ss_pred CchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhhcC
Q 010922 300 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 344 (497)
Q Consensus 300 ~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~ 344 (497)
.++.+++++.+++++++.+|.++|+|.||+|+++|.+|+..+.+.
T Consensus 204 ~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 204 TVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred chhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 466779999999999999999999999999999999999877543
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=4.3e-32 Score=260.88 Aligned_cols=223 Identities=22% Similarity=0.371 Sum_probs=185.3
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .|+. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-----~~~~-~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-----RGGI-RIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-----ccCc-eEE
Confidence 69999999999999999999999999999 6999999999999999999999999888888885322 1221 122
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCCCC
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 226 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 226 (497)
+... +. ..|++++++.++.+++ .++|++++||+++..++.++++.|++.++++++++.+.++ .
T Consensus 74 ~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 136 (223)
T cd06915 74 YVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--A 136 (223)
T ss_pred EEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--C
Confidence 2221 11 2699999999988774 3789999999999999999999999888999998887654 4
Q ss_pred CcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCchhhhh
Q 010922 227 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 306 (497)
Q Consensus 227 ~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~~~~i 306 (497)
..|+.+.+|++|+|..|.|||... .++++++|+|+|++++|..+ ... ..++.+++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~~-~~~---~~~~~~~~ 191 (223)
T cd06915 137 SRYGNVTVDGDGRVIAFVEKGPGA---------------------APGLINGGVYLLRKEILAEI-PAD---AFSLEADV 191 (223)
T ss_pred CcceeEEECCCCeEEEEEeCCCCC---------------------CCCcEEEEEEEECHHHHhhC-Ccc---CCChHHHH
Confidence 578999999889999999987743 13688999999999999753 221 23467789
Q ss_pred HHhhhccCceEEEEeccEEEecCCHHHHHHHH
Q 010922 307 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 338 (497)
Q Consensus 307 i~~li~~~~v~~~~~~g~w~dIgt~~~y~~An 338 (497)
++.+++++++.+|.++++|.||||++||.+|+
T Consensus 192 ~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 99999888999999999999999999999873
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=7.4e-32 Score=258.41 Aligned_cols=217 Identities=26% Similarity=0.458 Sum_probs=182.4
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+ .|+. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~~-~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-----KFGV-NIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-----hcCc-eEE
Confidence 69999999999999999999999999999 6999999999999999999999998888888885321 1331 133
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCCCC
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 226 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 226 (497)
++... ...|++++++.++.++. .++|+|++||++++.++.++++.|.++++++|+++.+.++ +
T Consensus 74 ~~~~~---------~~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 136 (217)
T cd04181 74 YVVQE---------EPLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED--P 136 (217)
T ss_pred EEeCC---------CCCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 33221 12699999999988773 3799999999999999999999999999999999987763 6
Q ss_pred CcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCchhhhh
Q 010922 227 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 306 (497)
Q Consensus 227 ~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~~~~i 306 (497)
.+|+.+..|++|+|.++.|||..+. ..++++|+|+|++++|. ++++......++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 194 (217)
T cd04181 137 SRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDA 194 (217)
T ss_pred CcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHH
Confidence 6899999998899999999987542 26789999999999884 5655432346778899
Q ss_pred HHhhhccCceEEEEeccEEEecC
Q 010922 307 IPAAIMEHDVQAYIFRDYWEDIG 329 (497)
Q Consensus 307 i~~li~~~~v~~~~~~g~w~dIg 329 (497)
++.++++.++++|.++|+|.|||
T Consensus 195 ~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 195 IPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHhcCCEEEEEcCCEEecCC
Confidence 99999999999999999999996
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.3e-31 Score=256.23 Aligned_cols=219 Identities=21% Similarity=0.391 Sum_probs=178.3
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+ +..|+.. +.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~-----~~~~~~~-i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGD-----GSKFGVN-IS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCC-----ccccCcc-EE
Confidence 68999999999999999999999999999 59999999999999999999999998888888742 2234421 23
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCCCC
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 226 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 226 (497)
++... ...||+++++.+.... .++|+|++||++++.++.++++.|+++++++++++.+.+. .
T Consensus 74 ~~~~~---------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 135 (220)
T cd06426 74 YVRED---------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--Q 135 (220)
T ss_pred EEECC---------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 33211 1269999998766433 3789999999999999999999999999999988876543 3
Q ss_pred CcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCchhhhh
Q 010922 227 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 306 (497)
Q Consensus 227 ~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~~~~i 306 (497)
..||++..|+ ++|.+|.|||... .++++|+|+|+++++.. ++. .......++
T Consensus 136 ~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~-i~~---~~~~~l~~~ 187 (220)
T cd06426 136 VPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDL-IPK---NEFFDMPDL 187 (220)
T ss_pred CcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhh-cCC---CCCcCHHHH
Confidence 4699999886 8999999987632 46899999999999864 332 222235688
Q ss_pred HHhhhcc-CceEEEEeccEEEecCCHHHHHHHH
Q 010922 307 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 338 (497)
Q Consensus 307 i~~li~~-~~v~~~~~~g~w~dIgt~~~y~~An 338 (497)
++.++++ .++.+|.++++|.|||||++|.+||
T Consensus 188 ~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 188 IEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 9998877 5699999999999999999999986
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2.5e-30 Score=248.46 Aligned_cols=248 Identities=20% Similarity=0.282 Sum_probs=201.9
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-cCC-----
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGN----- 136 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~~~----- 136 (497)
.+++|||.|||.||||.|.|...||.||||.++ |+|+|+++.+..+||++|++||+.+...+.+|....| +..
T Consensus 3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~ 81 (291)
T COG1210 3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKR 81 (291)
T ss_pred cccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHh
Confidence 467999999999999999999999999999999 5999999999999999999999988888888875444 211
Q ss_pred Cc--------ccCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeecc---CHHHHHH
Q 010922 137 GT--------NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQ 205 (497)
Q Consensus 137 g~--------~~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~---dl~~ll~ 205 (497)
++ .. ...+.+....|. .++|.+||+++|.+++.+ |+|.|+.||.++.. .+.+|++
T Consensus 82 ~K~~~L~~v~~i-~~~~~i~~vRQ~-------e~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 82 GKRELLEEVRSI-PPLVTISFVRQK-------EPLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred CHHHHHHHHHhc-ccCceEEEEecC-------CCCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHHH
Confidence 11 00 112344433332 348999999999999974 89999999999864 5788999
Q ss_pred HHHHcCCCeEEEEeeeCCCCCCcceEEE----ECCC-CCEEEEeecCCccccccccccccccCCCccccccCCccceeeE
Q 010922 206 SHVDRDADITISCAAVGESRASDYGLVK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 280 (497)
Q Consensus 206 ~h~~~~a~~tl~~~~~~~~~~~~~g~v~----~d~~-g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 280 (497)
.+.+.++ -++.+.+++.+..++||++. .+++ .+|.++.|||...+. .|+++..|-
T Consensus 148 ~ye~~g~-svi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GR 207 (291)
T COG1210 148 LYEETGG-SVIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGR 207 (291)
T ss_pred HHHHhCC-cEEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeee
Confidence 8888776 35666777766678999997 3333 589999999986643 368999999
Q ss_pred EEEcHHHHHHHHhhhCCC--CCchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhhcCCC
Q 010922 281 YVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 346 (497)
Q Consensus 281 yif~~~vL~~ll~~~~~~--~~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~ 346 (497)
|+|+|++|. +|++..++ .+-.++|.+..++++..+.+|.+.|..+|+|++..|++|+.++..+.+
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~~ 274 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRP 274 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhCh
Confidence 999999997 67776554 344578899999999999999999999999999999999999887654
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=3.8e-30 Score=248.14 Aligned_cols=204 Identities=16% Similarity=0.237 Sum_probs=159.1
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcc-cCCCcccCCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDG 143 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y-~~~g~~~~~~ 143 (497)
++|||||+|.|+||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ ++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 5899999999999999999999999999999 5999999999999999999999999999999996533 221 11111
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHH--HHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHH-----cCCCeEE
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 216 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~--~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~-----~~a~~tl 216 (497)
.++++... ...||+++++... .++ .++|++++||++++.|+.++++.|++ +++++|+
T Consensus 78 ~i~~~~~~---------~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIMSE---------DCRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEeCC---------CcCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 23433221 1258899987642 223 37899999999999999999999988 4888999
Q ss_pred EEeeeCCCC----CCcceEEEECCC-CCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHH
Q 010922 217 SCAAVGESR----ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 288 (497)
Q Consensus 217 ~~~~~~~~~----~~~~g~v~~d~~-g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL 288 (497)
++.++++++ ..+++++.+|++ ++|+.|.|||..+.....++..+++...+. ...++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~-~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSE-VEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCc-EEEECCceecCEEEeCCCCC
Confidence 998876543 224678888866 899999999987754444455555555544 34578999999999999875
No 48
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=3e-29 Score=238.84 Aligned_cols=195 Identities=42% Similarity=0.712 Sum_probs=160.5
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC----
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD---- 142 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~---- 142 (497)
|||||||.|+||+|+|..+||+|+||+|+||||+|+++++.++|+++|+|++++..+++.+|+.+. ..|+.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-----~~~~~~~~~ 75 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-----KEWDLDRKN 75 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-----CcccCCCCC
Confidence 699999999999999999999999999984599999999999999999999999999998888532 22321
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
..++++.+.+.. .++|..||++||+++..++++ ...++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 76 ~~~~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~--- 146 (200)
T cd02508 76 GGLFILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK--- 146 (200)
T ss_pred CCEEEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh---
Confidence 124555443211 234668999999999998862 12478999999999999999999999998888887664
Q ss_pred CCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC-CCCc
Q 010922 223 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-TSND 301 (497)
Q Consensus 223 ~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~-~~~d 301 (497)
+++|+|+|++++|..+++...+ +..+
T Consensus 147 -----------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~ 173 (200)
T cd02508 147 -----------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHD 173 (200)
T ss_pred -----------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcch
Confidence 2679999999999777765432 3557
Q ss_pred hhhhhHHhhhccCceEEEEeccEEEec
Q 010922 302 FGSEIIPAAIMEHDVQAYIFRDYWEDI 328 (497)
Q Consensus 302 ~~~~ii~~li~~~~v~~~~~~g~w~dI 328 (497)
+.+++++.++++.++.+|.++|||.||
T Consensus 174 ~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 174 FGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred hHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 888999999999999999999999996
No 49
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.97 E-value=2.8e-29 Score=243.61 Aligned_cols=222 Identities=13% Similarity=0.175 Sum_probs=173.2
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+ + .+ +.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~-~------~~---~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK-Y------PN---IK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc-c------CC---eE
Confidence 69999999999999999999999999999 69999999999999999999999998989888842 1 12 44
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCCCC
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 226 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 226 (497)
++...+. ...|++++++.+..++. ++|++++||++++. ++++.|.++++++|+++.+..+...
T Consensus 70 ~~~~~~~-------~~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (229)
T cd02523 70 FVYNPDY-------AETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWE 132 (229)
T ss_pred EEeCcch-------hhhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCccccc
Confidence 4433221 02699999999988773 78999999999865 5678888888899998887443334
Q ss_pred CcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhh---hCC--CCCc
Q 010922 227 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSND 301 (497)
Q Consensus 227 ~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~---~~~--~~~d 301 (497)
..++....| ++++..+.+||..+. ...+.++|+|+|++++|..+.+. ..+ ...+
T Consensus 133 ~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~ 191 (229)
T cd02523 133 DEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNL 191 (229)
T ss_pred ccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccc
Confidence 456654443 378999999986542 13578999999999997654332 111 2456
Q ss_pred hhhhhHHhhhcc--CceEEEEeccEEEecCCHHHHHHHH
Q 010922 302 FGSEIIPAAIME--HDVQAYIFRDYWEDIGTIKSFYEAN 338 (497)
Q Consensus 302 ~~~~ii~~li~~--~~v~~~~~~g~w~dIgt~~~y~~An 338 (497)
+++++++.++++ .++.++.. ++|.||||+++|.+|+
T Consensus 192 ~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 192 YYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred cHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 788999999984 45556665 8999999999999874
No 50
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.97 E-value=6.8e-29 Score=241.11 Aligned_cols=222 Identities=18% Similarity=0.232 Sum_probs=168.8
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
.||||||.|+||+|+|..+||||+||+|+ |||+|+|+++.++|+++++|++++.. ....++.+.+-....+ +.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~~~~-----~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLLAPN-----AT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHhCCC-----CE
Confidence 48999999999999999999999999999 69999999999999999999987432 1223332211011111 22
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCCCC
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 226 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 226 (497)
++..... ..||++++++++.++. ..++|+|++||++++.++.++++.|.+.+.+.++++.+.+ .
T Consensus 74 i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 137 (231)
T cd04183 74 VVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---H 137 (231)
T ss_pred EEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---C
Confidence 2221111 2699999999998874 2378999999999999999999999887777777666542 3
Q ss_pred CcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHH-HHHHHHhhhC-----CCCC
Q 010922 227 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY-----PTSN 300 (497)
Q Consensus 227 ~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~-vL~~ll~~~~-----~~~~ 300 (497)
.+|+.+..|++|+|..+.||+.. +.++++|+|+|+++ .|.+++++.. +...
T Consensus 138 ~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (231)
T cd04183 138 PRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGE 194 (231)
T ss_pred CCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCc
Confidence 46999999999999999988431 24689999999998 5555555421 1223
Q ss_pred chhhhhHHhhhcc-CceEEEEe-ccEEEecCCHHHH
Q 010922 301 DFGSEIIPAAIME-HDVQAYIF-RDYWEDIGTIKSF 334 (497)
Q Consensus 301 d~~~~ii~~li~~-~~v~~~~~-~g~w~dIgt~~~y 334 (497)
.+..++++.++++ .++.+|.+ .++|.|||||++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 4567899999977 46999999 6999999999987
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=3.7e-27 Score=235.38 Aligned_cols=233 Identities=15% Similarity=0.212 Sum_probs=169.4
Q ss_pred eEEEEecCCCCCcccCCCC-CCCCccccccC-cccchhHhHHHHHhc-CCcEEEEEcccChhH-HHHHHHhcccCCCccc
Q 010922 65 AYAVMTSKHPNEVMTLAPP-RAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNF 140 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~-~~PK~LlPI~g-~p~LId~~L~~l~~~-GI~~I~Iv~~~~~~~-l~~~l~~~y~~~g~~~ 140 (497)
|++||||+|.|+||+|+|. .+||+|+|++| + |||+++++++.+. ++++|+|+|++.... +.+++.+ . .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~---~--- 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G---L--- 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c---C---
Confidence 7899999999999999996 79999999999 7 6999999999998 599999999986544 4444422 0 0
Q ss_pred CCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeec--cCHHHHHHHHHH---cCCCeE
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADIT 215 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~--~dl~~ll~~h~~---~~a~~t 215 (497)
..+.++.... ..||++|+..+..++.. ....+.++|++||+++. .+|.++++.|.+ .++.+|
T Consensus 73 --~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt 139 (274)
T cd02509 73 --PEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVT 139 (274)
T ss_pred --CCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEE
Confidence 1134443221 26999999999888752 12346799999999986 567777776553 677888
Q ss_pred EEEeeeCCCCCCcceEEEECCCC-----CEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHH
Q 010922 216 ISCAAVGESRASDYGLVKIDNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 290 (497)
Q Consensus 216 l~~~~~~~~~~~~~g~v~~d~~g-----~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ 290 (497)
+.+.+.+. .+.||++..|++. +|.+|.|||.......+ .....+++++|+|+|+++.|.+
T Consensus 140 ~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~ 204 (274)
T cd02509 140 FGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLE 204 (274)
T ss_pred EEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHH
Confidence 88887644 4689999998653 89999999986543211 1113468999999999998877
Q ss_pred HHhhhCCCCC----------------chhhhhHHh--------h-hcc-CceEEEEeccEEEecCCHHH
Q 010922 291 LLRWRYPTSN----------------DFGSEIIPA--------A-IME-HDVQAYIFRDYWEDIGTIKS 333 (497)
Q Consensus 291 ll~~~~~~~~----------------d~~~~ii~~--------l-i~~-~~v~~~~~~g~w~dIgt~~~ 333 (497)
.+++..|... .+..+.++. + .++ .++.+.+.+..|.|+|++++
T Consensus 205 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 205 ELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 7776554210 112233332 1 222 56888888889999999875
No 52
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=1.5e-26 Score=223.09 Aligned_cols=204 Identities=16% Similarity=0.241 Sum_probs=159.7
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|+|||||+|.|+||.|+|...||+|+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.++.. .+.+ ..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~-~~~~-~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSS-LSSK-MI 77 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccccc-ccCC-ce
Confidence 6899999999999999999999999999999 6999999999999999999999999999999997544210 0111 12
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHH--HHHcCCCeEEEEeeeC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVG 222 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~--h~~~~a~~tl~~~~~~ 222 (497)
+.++...+. ...|||++++++.+++. ++|+|++||+++++|+.+++++ +..+++++++++...+
T Consensus 78 v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~ 143 (216)
T cd02507 78 VDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLAS 143 (216)
T ss_pred EEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEecc
Confidence 344333221 23799999999988774 7899999999999999999976 5556777777666543
Q ss_pred CC-------CCCcceEEEECCC---CCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHH
Q 010922 223 ES-------RASDYGLVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 288 (497)
Q Consensus 223 ~~-------~~~~~g~v~~d~~---g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL 288 (497)
.. .+.+++++.+|++ .+++.+.|++.... .+.+..+++...|. +..++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 144 PPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 21 1457899999987 58888888887543 23356667776663 55689999999999999864
No 53
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.94 E-value=3.3e-25 Score=214.56 Aligned_cols=221 Identities=20% Similarity=0.299 Sum_probs=172.6
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|+++|+|++++..+.+.+++.+ ++ ++
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~---~~ 65 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PN---VE 65 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CC---cE
Confidence 69999999999985 689999999999 69999999999999999999999988877777632 22 34
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeeeCCC
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGES 224 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 224 (497)
++.... ..|++++++.+.++++. ..++|++++||+ +...++..+++.|.+.++++++.+.+.++
T Consensus 66 ~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~- 131 (229)
T cd02540 66 FVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED- 131 (229)
T ss_pred EEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC-
Confidence 433221 26999999999988851 247899999998 33678999999998878888888777654
Q ss_pred CCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC---CCCc
Q 010922 225 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 301 (497)
Q Consensus 225 ~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~---~~~d 301 (497)
+..|+.+..|++|+|..+.|||...... ...+++++|+|+|+++.|.++++.... +...
T Consensus 132 -p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~ 193 (229)
T cd02540 132 -PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEY 193 (229)
T ss_pred -CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcE
Confidence 5679988888889999999987532110 012578999999999887777766432 2445
Q ss_pred hhhhhHHhhhcc-CceEEEEeccE--EEecCCHHHH
Q 010922 302 FGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSF 334 (497)
Q Consensus 302 ~~~~ii~~li~~-~~v~~~~~~g~--w~dIgt~~~y 334 (497)
+.+++++.++++ .+|++|.++|| |+.|+||.++
T Consensus 194 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 194 YLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 678999999976 57999999876 6777888753
No 54
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.92 E-value=5.4e-25 Score=211.90 Aligned_cols=201 Identities=18% Similarity=0.238 Sum_probs=151.6
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccCh-hHHHHHHHhcccCCCcccCCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~-~~l~~~l~~~y~~~g~~~~~~ 143 (497)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++.. +.+..++.+..+.. +..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~----~~~ 75 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNL----KQK 75 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhccccc----Ccc
Confidence 6999999999999999999999999999999 69999999999999999999999765 45666664321111 111
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCC
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 223 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 223 (497)
...+..... ...||+++|+.+...+. ++|+|++||++++.++.++++.|++.++.+|+++.+...
T Consensus 76 ~~~~~~~~~--------~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~ 140 (214)
T cd04198 76 LDEVTIVLD--------EDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPV 140 (214)
T ss_pred eeEEEecCC--------CCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCC
Confidence 112221111 23699999999987663 689999999999999999999999999999999887542
Q ss_pred C----------C-CCcceEEEECC-CCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHH
Q 010922 224 S----------R-ASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 288 (497)
Q Consensus 224 ~----------~-~~~~g~v~~d~-~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL 288 (497)
+ + ...+.++.+|+ +++++.+....+.. ....++.++|...|. +..++++.++++|+|++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 141 SSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPR-VTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCC-EEEEcCcccceEEEEEeeeC
Confidence 1 1 23466777775 47888776643222 223446667776663 45688999999999998764
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=4.4e-24 Score=227.98 Aligned_cols=240 Identities=13% Similarity=0.201 Sum_probs=167.2
Q ss_pred eEEEEecCCCCCcccCCCCC-CCCccccccC-cccchhHhHHHHHhcCCcEEEEEcccChh-HHHHHHHhcccCCCcccC
Q 010922 65 AYAVMTSKHPNEVMTLAPPR-AATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTYFGNGTNFG 141 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~-~PK~LlPI~g-~p~LId~~L~~l~~~GI~~I~Iv~~~~~~-~l~~~l~~~y~~~g~~~~ 141 (497)
|++||||||.||||+|+|.. +||+|+|+.| + |||+++++.|...|+++++|+++.... .+.+.+. .+ +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~-~~-------~ 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLR-EI-------G 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHH-Hc-------C
Confidence 68999999999999999986 8999999977 6 699999999999999999999986543 2333342 21 1
Q ss_pred CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeecc--CHHHHHHHH---HHcCCCeEE
Q 010922 142 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFIQSH---VDRDADITI 216 (497)
Q Consensus 142 ~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~--dl~~ll~~h---~~~~a~~tl 216 (497)
.....++.... ..|||+++..+..++... ....+.++|++||+++.. +|.++++.+ .+.++.+|+
T Consensus 72 ~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~-~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtl 141 (468)
T TIGR01479 72 KLASNIILEPV---------GRNTAPAIALAALLAARR-NGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTF 141 (468)
T ss_pred CCcceEEeccc---------ccCchHHHHHHHHHHHHH-HCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11122332211 269999999877666310 012345999999988753 488888765 345666777
Q ss_pred EEeeeCCCCCCcceEEEECC------CCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHH
Q 010922 217 SCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 290 (497)
Q Consensus 217 ~~~~~~~~~~~~~g~v~~d~------~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ 290 (497)
...+.+. .+.||++..|+ .++|.+|.|||+.++... +.....+++++|+|+|+++.|.+
T Consensus 142 gi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~-------------~l~~g~~~wNsGif~~~~~~ll~ 206 (468)
T TIGR01479 142 GIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQA-------------YLESGDYYWNSGMFLFRASRYLA 206 (468)
T ss_pred EecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHH-------------HHhcCCeEEEeeEEEEEHHHHHH
Confidence 7765543 46899999873 268999999998654221 11112478999999999887776
Q ss_pred HHhhhCCCC-----------------CchhhhhHH---------hhhcc-CceEEEEeccEEEecCCHHHHHHHH
Q 010922 291 LLRWRYPTS-----------------NDFGSEIIP---------AAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 338 (497)
Q Consensus 291 ll~~~~~~~-----------------~d~~~~ii~---------~li~~-~~v~~~~~~g~w~dIgt~~~y~~An 338 (497)
.|++..|.- ..+..++++ .++++ .++.+.+.+..|.|+|++++|.+.-
T Consensus 207 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 207 ELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 666544320 111134444 22333 5688888888999999999998863
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.89 E-value=1e-21 Score=192.45 Aligned_cols=233 Identities=15% Similarity=0.196 Sum_probs=158.4
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
+.+||||+|.++||. ||+|+|++|+ |||+|+++.|.++|+++|+|++++ +.+.+++.+ ++
T Consensus 3 ~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~--------~~--- 62 (245)
T PRK05450 3 FLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA--------FG--- 62 (245)
T ss_pred eEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH--------cC---
Confidence 578999999999983 6999999999 599999999999999999998863 556555532 22
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe-ee-ccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
+.++...+ .++.||+.....+ ..++ ....+.+++++||+ +. ..++.++++.|.++++++++++.+..
T Consensus 63 ~~v~~~~~-------~~~~gt~~~~~~~-~~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~ 131 (245)
T PRK05450 63 GEVVMTSP-------DHPSGTDRIAEAA-AKLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIH 131 (245)
T ss_pred CEEEECCC-------cCCCchHHHHHHH-HhcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecC
Confidence 23332211 1235777655433 2331 01235699999998 44 56788999988877777777776652
Q ss_pred C----CCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC
Q 010922 223 E----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 298 (497)
Q Consensus 223 ~----~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~ 298 (497)
+ ..++.++++ +|++|+|++|.|||..+.... ++++ ...+++.++|+|+|++++|..+++. .+.
T Consensus 132 ~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~~ 198 (245)
T PRK05450 132 DAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PPS 198 (245)
T ss_pred CHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CCC
Confidence 2 224557765 888899999999985332100 0000 0124889999999999999866542 222
Q ss_pred CCchh--hhhHHhhhccCceEEEEecc-EEEecCCHHHHHHHHHHh
Q 010922 299 SNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 341 (497)
Q Consensus 299 ~~d~~--~~ii~~li~~~~v~~~~~~g-~w~dIgt~~~y~~An~~l 341 (497)
..+.. .++++.+-+..++.++..+| +|.|||||++|.+|+..+
T Consensus 199 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 199 PLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred ccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 11111 11233333446899999996 999999999999999765
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.89 E-value=9e-22 Score=192.19 Aligned_cols=226 Identities=15% Similarity=0.255 Sum_probs=155.8
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhc-CCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~-GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
+.+||+|+|.++||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--------~~-- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--------FG-- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--------cC--
Confidence 579999999999984 7999999999 5999999999998 99999999864 455555532 22
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHc-CCCeEEEEee
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR-DADITISCAA 220 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~-~a~~tl~~~~ 220 (497)
++++...+ .+..||++ +..+...+. ...+.||+++||. +...++..+++.|.+. ++++++++.+
T Consensus 63 -~~~~~~~~-------~~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 63 -GKVVMTSP-------DHPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred -CEEEEcCc-------ccCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 23332211 12358886 555554453 1136799999997 4466889999988776 7888988887
Q ss_pred eCCCC----CCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhC
Q 010922 221 VGESR----ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 296 (497)
Q Consensus 221 ~~~~~----~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~ 296 (497)
.+++. ...|+ +..|++|+|+.|.+||....... . ...+.++++|+|+|++++|..+.+. .
T Consensus 130 ~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~~------------~--~~~~~~~~~Giy~~~~~~~~~~~~~-~ 193 (239)
T cd02517 130 ISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRDS------------S--EDFPYYKHIGIYAYRRDFLLRFAAL-P 193 (239)
T ss_pred cCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCCC------------C--CCCceeEEEEEEEECHHHHHHHHhC-C
Confidence 65421 22334 45677899999998754221000 0 0013689999999999999866443 1
Q ss_pred CCCCchhhhhHH--hhhcc-CceEEEEeccEEEecCCHHHHHHHHH
Q 010922 297 PTSNDFGSEIIP--AAIME-HDVQAYIFRDYWEDIGTIKSFYEANM 339 (497)
Q Consensus 297 ~~~~d~~~~ii~--~li~~-~~v~~~~~~g~w~dIgt~~~y~~An~ 339 (497)
..... ..+.++ .++++ .++.++..+++|.|||||++|.+|+.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 223333 34544 56999999999999999999999874
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=6.6e-22 Score=187.30 Aligned_cols=223 Identities=13% Similarity=0.174 Sum_probs=150.8
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEc-ccChhHHHHHHHhcccCCCcccC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNFG 141 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~-~~~~~~l~~~l~~~y~~~g~~~~ 141 (497)
++|+|||||||.|+||.| .+||||+.++|+ ++|+|+|++|.++|+++++||+ +|+.+.+.+++. .| ++.
T Consensus 2 ~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~-----~~~ 71 (239)
T COG1213 2 HPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KY-----PFN 71 (239)
T ss_pred CceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cC-----Ccc
Confidence 589999999999999998 899999999999 5999999999999999999999 888888877774 33 121
Q ss_pred CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 142 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 142 ~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
.+++...... -.+|+.+|..+.++.. +.|++++|||+|...+ ++...+.... ++.+...
T Consensus 72 ---~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~---~e~l~~a~~~-~li~d~~ 130 (239)
T COG1213 72 ---AKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSI---LERLLEAPGE-GLIVDRR 130 (239)
T ss_pred ---eEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHH---HHHHHhCcCC-cEEEecc
Confidence 3444432111 1477999999998886 6799999999998654 4444443332 3333322
Q ss_pred CCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCc
Q 010922 222 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 301 (497)
Q Consensus 222 ~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d 301 (497)
+.....+-.....+++|++..+..+-.. ....++|++.|+++++....+........
T Consensus 131 ~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~~~~ 187 (239)
T COG1213 131 PRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVERSEY 187 (239)
T ss_pred ccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhhhhH
Confidence 1110111222334578999998765442 24579999999999776543332211111
Q ss_pred hhhhhHHhhhccCceEEEEe-----ccEEEecCCHHHHHHHHHHhhc
Q 010922 302 FGSEIIPAAIMEHDVQAYIF-----RDYWEDIGTIKSFYEANMALTK 343 (497)
Q Consensus 302 ~~~~ii~~li~~~~v~~~~~-----~g~w~dIgt~~~y~~An~~l~~ 343 (497)
-..++.+ ...+.+-.. ..+|.||+||+|+.+|...+..
T Consensus 188 ~~~~~~~----~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 188 DYREVEK----EAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred HHHHHHH----HhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 1222222 222222222 3589999999999999988764
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.85 E-value=1e-19 Score=177.62 Aligned_cols=224 Identities=17% Similarity=0.293 Sum_probs=151.6
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhc-CCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~-GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
+.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ ++
T Consensus 3 ~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~--------~~-- 63 (238)
T PRK13368 3 VVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA--------FG-- 63 (238)
T ss_pred EEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH--------cC--
Confidence 579999999999983 4999999999 5999999999998 89999999864 556666632 22
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCC-CeEEEEee
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCAA 220 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a-~~tl~~~~ 220 (497)
++++...+. +..|++. +..+...+. .+.|+++.||. +...++..+++.|.+.+. ++++++.+
T Consensus 64 -~~v~~~~~~-------~~~g~~~-~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 128 (238)
T PRK13368 64 -GKVVMTSDD-------HLSGTDR-LAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAP 128 (238)
T ss_pred -CeEEecCcc-------CCCccHH-HHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEE
Confidence 222221111 1247774 555554442 36899999996 557789999998876544 56666665
Q ss_pred eCC-CC---CCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhC
Q 010922 221 VGE-SR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 296 (497)
Q Consensus 221 ~~~-~~---~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~ 296 (497)
.+. .+ +..+++ ..+++|+|..|.|+|....... . ...++.++|+|+|++++|..+ +...
T Consensus 129 ~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~--~-------------~~~~~~n~giy~~~~~~l~~~-~~~~ 191 (238)
T PRK13368 129 ISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDG--E-------------SARYLKHVGIYAFRRDVLQQF-SQLP 191 (238)
T ss_pred cCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCC--C-------------CCceeEEEEEEEeCHHHHHHH-HcCC
Confidence 543 11 334544 4456799999997653211000 0 013578999999999999753 3321
Q ss_pred CCC-Cchhh-hhHHhhhc-cCceEEEEeccEEEecCCHHHHHHHHHH
Q 010922 297 PTS-NDFGS-EIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMA 340 (497)
Q Consensus 297 ~~~-~d~~~-~ii~~li~-~~~v~~~~~~g~w~dIgt~~~y~~An~~ 340 (497)
+.. .++.. +++ .++. ..++++|..+++|.|||||+||.+|+..
T Consensus 192 ~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 192 ETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 111 11222 455 4544 4569999999999999999999999763
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.83 E-value=1.5e-19 Score=192.08 Aligned_cols=239 Identities=16% Similarity=0.239 Sum_probs=164.1
Q ss_pred eEEEEecCCCCCcccCCCCC-CCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhH-HHHHHHhcccCCCcccCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPR-AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSAS-LNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~-~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~-l~~~l~~~y~~~g~~~~~ 142 (497)
|.+||||+|.||||||+|.. +||+|+|++|.-|||+++++.+...++.+.+|||+..... +.+.+. .. .. . .
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~~-~~---~-~ 79 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-QL-NK---L-T 79 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-hc-CC---c-c
Confidence 89999999999999999997 7999999965326999999999998988888889876544 333442 11 10 0 0
Q ss_pred CeEEE-eeCccCCCCCCCccccChHHHHHHHHHHhhhhccC-C-CCcEEEEcCCeeecc--CHHHHHHHH---HHcCCCe
Q 010922 143 GFVEV-LAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR-N-IENVAILCGDHLYRM--DYMDFIQSH---VDRDADI 214 (497)
Q Consensus 143 ~~VeI-l~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~-~-~e~~LVl~gD~l~~~--dl~~ll~~h---~~~~a~~ 214 (497)
..+ +.+.. .+||.|+..+..++.. .. + .+-++|+++||+... .|.+.++.. .+.+..+
T Consensus 80 --~~ii~EP~~----------rnTApaialaa~~~~~--~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lv 145 (478)
T PRK15460 80 --ENIILEPAG----------RNTAPAIALAALAAKR--HSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLV 145 (478)
T ss_pred --ccEEecCCC----------CChHHHHHHHHHHHHH--hcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 123 33332 5899999887766642 11 1 356889999999854 255555443 2346667
Q ss_pred EEEEeeeCCCCCCcceEEEECCC---------CCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcH
Q 010922 215 TISCAAVGESRASDYGLVKIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKK 285 (497)
Q Consensus 215 tl~~~~~~~~~~~~~g~v~~d~~---------g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~ 285 (497)
|+...|... .+.||+++.++. .+|.+|.|||+..+...+ +....++||+|+|+|+.
T Consensus 146 t~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~y-------------l~~G~y~WNsGiF~~~a 210 (478)
T PRK15460 146 TFGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAY-------------VASGEYYWNSGMFLFRA 210 (478)
T ss_pred EEecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHH-------------HHcCCEEEecceeheeH
Confidence 777776544 468999997642 269999999998764332 22245899999999999
Q ss_pred HHHHHHHhhhCCCC------------C--ch--h-hhhHHh--------hhcc--CceEEEEeccEEEecCCHHHHHHHH
Q 010922 286 DVLFKLLRWRYPTS------------N--DF--G-SEIIPA--------AIME--HDVQAYIFRDYWEDIGTIKSFYEAN 338 (497)
Q Consensus 286 ~vL~~ll~~~~~~~------------~--d~--~-~~ii~~--------li~~--~~v~~~~~~g~w~dIgt~~~y~~An 338 (497)
+.+...+++..|.. . .+ . .+.++. ++.+ .++...+.+--|.|+|++.++.+..
T Consensus 211 ~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 211 GRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 98877776654420 0 10 0 222222 2222 4677778787899999999998753
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=1.9e-19 Score=177.29 Aligned_cols=241 Identities=17% Similarity=0.234 Sum_probs=167.3
Q ss_pred ceEEEEecCCCCCcccCCCC-CCCCccccccC-cccchhHhHHHHHh-cCCcEEEEEcccChhH-HHHHHHhcccCCCcc
Q 010922 64 VAYAVMTSKHPNEVMTLAPP-RAATPAVPVAG-CYRLIDIPMSNCIN-SGINKIFVLTQFNSAS-LNRHIARTYFGNGTN 139 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~-~~PK~LlPI~g-~p~LId~~L~~l~~-~GI~~I~Iv~~~~~~~-l~~~l~~~y~~~g~~ 139 (497)
+|.+||||+|.|||||||+. ..||++|++.| + +|++.++.++.. .+.+++++||+..+.. +.+.+.+.-.. .
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~---~ 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE---N 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc---c
Confidence 47899999999999999985 58999999965 6 799999999988 6799999999977643 33434221001 1
Q ss_pred cCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC--HHHHHHHH---HHcCCCe
Q 010922 140 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSH---VDRDADI 214 (497)
Q Consensus 140 ~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d--l~~ll~~h---~~~~a~~ 214 (497)
.. . -++.+.. .+||.|+..+.-.+.. +..+.-++|+++||+.... |.+.++.. .+.+..+
T Consensus 77 ~~--~-illEP~g----------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lV 141 (333)
T COG0836 77 AA--G-IILEPEG----------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIV 141 (333)
T ss_pred cc--c-eEeccCC----------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEE
Confidence 11 1 2344432 4899999887655542 2233459999999999653 66666653 3466777
Q ss_pred EEEEeeeCCCCCCcceEEEECC------CCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHH
Q 010922 215 TISCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 288 (497)
Q Consensus 215 tl~~~~~~~~~~~~~g~v~~d~------~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL 288 (497)
|+...|... .+.||+++..+ -.+|.+|.|||+..+.+.+ +....++|++|+|+|+...+
T Consensus 142 TfGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~y-------------v~sG~y~WNSGmF~Fra~~~ 206 (333)
T COG0836 142 TFGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKY-------------VESGEYLWNSGMFLFRASVF 206 (333)
T ss_pred EEecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHH-------------HHcCceEeeccceEEEHHHH
Confidence 777776544 46899998754 2379999999998765332 23355899999999999987
Q ss_pred HHHHhhhCCCC-----------Cc--hh---hhh--------HHhhhcc--CceEEEEeccEEEecCCHHHHHHHH
Q 010922 289 FKLLRWRYPTS-----------ND--FG---SEI--------IPAAIME--HDVQAYIFRDYWEDIGTIKSFYEAN 338 (497)
Q Consensus 289 ~~ll~~~~~~~-----------~d--~~---~~i--------i~~li~~--~~v~~~~~~g~w~dIgt~~~y~~An 338 (497)
.+.+++..|.- .+ +. .+. +.+++.+ .++...+.+-.|-|+|++.++++..
T Consensus 207 l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 207 LEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred HHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 77776655430 01 00 111 1222322 6777788888999999999887754
No 62
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=2.4e-18 Score=156.93 Aligned_cols=219 Identities=11% Similarity=0.121 Sum_probs=153.6
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|.|||||||.|+||.|+|...||+||.|.|+ |||+++++.|.++||++|+||+||..++. +||.+.| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy-------~--- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY-------D--- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc-------C---
Confidence 6899999999999999999999999999999 59999999999999999999999998765 5675544 2
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 224 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 224 (497)
|.++....-. .-+...+++.++++++ +..|+.+|.+..-++ ++.......-.......
T Consensus 69 vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~- 126 (231)
T COG4750 69 VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG- 126 (231)
T ss_pred eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC-
Confidence 5555432110 1367889999999985 688999999886554 12211111111111111
Q ss_pred CCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHH---HHHHHhhhCCC---
Q 010922 225 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV---LFKLLRWRYPT--- 298 (497)
Q Consensus 225 ~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~v---L~~ll~~~~~~--- 298 (497)
..+-.++..+.+|+|+++.-.-. .....+|+..|++.. +..+++..+-.
T Consensus 127 -~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~ 181 (231)
T COG4750 127 -KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLEN 181 (231)
T ss_pred -CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchh
Confidence 23344667788899999854322 246789999999763 44456554321
Q ss_pred CCchhhhhHHhhhccCceEEEEec-cEEEecCCHHHHHHHHHHhh
Q 010922 299 SNDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 299 ~~d~~~~ii~~li~~~~v~~~~~~-g~w~dIgt~~~y~~An~~l~ 342 (497)
..-|+.+++-.-+++..++.-.++ +--+++++.++|.+....++
T Consensus 182 ~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 182 RKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 234566666666666666665554 45778999999988776644
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.67 E-value=9.2e-15 Score=147.25 Aligned_cols=233 Identities=13% Similarity=0.168 Sum_probs=151.7
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
.+.+||+|+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+| +....+.+.+++.+ ++
T Consensus 47 ~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~~--------~~-- 108 (293)
T PLN02917 47 RVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCRG--------FG-- 108 (293)
T ss_pred cEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHHH--------cC--
Confidence 5679999999999993 4999999999 59999999999876544433 33556667666631 12
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEE--EEe
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITI--SCA 219 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl--~~~ 219 (497)
++++...+. ...||+++ ..+...++. ..+.++++.||. +....+..+++.+.+. .++++ ++.
T Consensus 109 -v~vi~~~~~-------~~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~ 174 (293)
T PLN02917 109 -ADVIMTSES-------CRNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVT 174 (293)
T ss_pred -CEEEeCCcc-------cCCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEee
Confidence 233321111 12488877 467666641 246899999998 3356788898887654 33333 333
Q ss_pred eeCCCCCCcceEEE--ECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCC
Q 010922 220 AVGESRASDYGLVK--IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 297 (497)
Q Consensus 220 ~~~~~~~~~~g~v~--~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~ 297 (497)
+...+.+.+||.++ .|++|+++.|..++-.....+ +++ .....+.++|+|.|+.+.|. .+....+
T Consensus 175 ~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~--~~~i~~~n~Giy~f~~~~L~-~l~~l~~ 241 (293)
T PLN02917 175 SLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVN--PQFPYLLHLGIQSYDAKFLK-IYPELPP 241 (293)
T ss_pred ecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------ccc--cccceEEEEEEEEeCHHHHH-HHHcCCC
Confidence 33333467899886 687898886664422110000 000 01236889999999999998 4444332
Q ss_pred ---CCCchhhhhHHhhhcc-CceEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010922 298 ---TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 343 (497)
Q Consensus 298 ---~~~d~~~~ii~~li~~-~~v~~~~~~g~w~dIgt~~~y~~An~~l~~ 343 (497)
....++++++ ++++ .++.++.....-.-|+|+++|.+++..|.+
T Consensus 242 ~n~e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 242 TPLQLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CcccchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 2345666666 3344 578888776566689999999999988754
No 64
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.59 E-value=4.3e-15 Score=144.47 Aligned_cols=132 Identities=24% Similarity=0.325 Sum_probs=73.0
Q ss_pred CchhhhhHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhhcCCCC-c---cccCCCCC-CCCCCccCCCeEEcCeEe
Q 010922 300 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPA-F---HFYDPKTP-FYTSPRFLPPTKIDNCRI 374 (497)
Q Consensus 300 ~d~~~~ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~~~~~~-~---~~~~~~~~-i~~~~~~~~~~~i~~~~i 374 (497)
.+| .+.++.+++++ ++...|||.|+ ++|+++|+++++.... . ....+..+ +..++++.|.+.+.+
T Consensus 28 ~~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g--- 97 (231)
T TIGR03532 28 VDF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD--- 97 (231)
T ss_pred ccc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC---
Confidence 344 57888888766 88999999999 9999999999976421 0 00011110 111222333333321
Q ss_pred eceEECCCCEEc-ceEE-eeeEEcCCcEECCCCEEc-ceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeec------
Q 010922 375 KDAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELK-DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN------ 445 (497)
Q Consensus 375 ~~s~I~~~~~i~-~~~v-~~svIg~~~~i~~~~~i~-~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~------ 445 (497)
.+.||++|.|+ ++.+ .+++||++|.|++++.|. ++++..+ +.||.++.|.+
T Consensus 98 -~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~-------------------~~Ig~~~~I~~~~~~~~ 157 (231)
T TIGR03532 98 -QVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKN-------------------VHIGAGAVLAGVIEPPS 157 (231)
T ss_pred -CeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCC-------------------cEEcCCcEEcccccccc
Confidence 23444444443 1222 245666666666666664 3333333 56666666642
Q ss_pred ---eEEcCCCEECCCcEEc
Q 010922 446 ---CIIDKNVKIGKDVVIV 461 (497)
Q Consensus 446 ---~iI~~~~~Ig~~~~i~ 461 (497)
++|++++.||.+++|.
T Consensus 158 ~~~v~IGd~v~IG~gsvI~ 176 (231)
T TIGR03532 158 AKPVVIEDNVLIGANAVIL 176 (231)
T ss_pred CCCeEECCCcEECCCCEEc
Confidence 5666666666666554
No 65
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.51 E-value=6.5e-13 Score=127.80 Aligned_cols=210 Identities=13% Similarity=0.088 Sum_probs=138.9
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhc-CCcEEEEEcccCh-hHHHHHHHhcccCCCcccCCCe
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~-GI~~I~Iv~~~~~-~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|||||+|.|+||.. ..||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+..++. . .. .
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~--~~---~ 67 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLV-----A--RA---V 67 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhh-----c--CC---c
Confidence 79999999999963 479999999999 5999999999998 8999999998764 33333331 1 00 1
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
++++... .+..++++.+...++ ..+.++++.||. +....+..+++.+.+. +++++..+..
T Consensus 68 ~~~~~~~-----------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~ 129 (217)
T TIGR00453 68 PKIVAGG-----------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA 129 (217)
T ss_pred EEEeCCC-----------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc
Confidence 3333211 134578888876661 246899999998 4455678888877653 3444444443
Q ss_pred CCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCch
Q 010922 223 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 302 (497)
Q Consensus 223 ~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~ 302 (497)
.++...|++|.+..+.++... +...+ .|.|+...|.++++...... .+
T Consensus 130 ------~~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~~~~~~-~~ 177 (217)
T TIGR00453 130 ------DTLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALARAKEEG-FE 177 (217)
T ss_pred ------ceEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHHHHhcC-CC
Confidence 344455666778887764221 22333 58999999987775432222 22
Q ss_pred hhhhHHhhhc-cCceEEEEeccEEEecCCHHHHHHHHHH
Q 010922 303 GSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMA 340 (497)
Q Consensus 303 ~~~ii~~li~-~~~v~~~~~~g~w~dIgt~~~y~~An~~ 340 (497)
..|....+.+ ..++..+..+..+.+|+|++||..|...
T Consensus 178 ~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 3333333322 3567777777777899999999888653
No 66
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.51 E-value=2e-13 Score=116.56 Aligned_cols=102 Identities=34% Similarity=0.590 Sum_probs=87.6
Q ss_pred CeEE-cCeEeeceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee
Q 010922 366 PTKI-DNCRIKDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR 444 (497)
Q Consensus 366 ~~~i-~~~~i~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 444 (497)
|++| ++++|.+++||++|.|+++.+++|+||++|.|++++.|.+++++++ +.||+++.|+
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 4566 4588889999999999989999999999999999999999999887 8999999999
Q ss_pred ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeE-EccccEEEccCcEE
Q 010922 445 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFY-IRSGITIIMEKATI 491 (497)
Q Consensus 445 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~-i~~g~~vi~~~~~i 491 (497)
+|+|+++++|++++.+.+.....+ .++| ..+|+++|++++.+
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDR-----ARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred eEEECCCCEECCCCEECCCccccc-----ccceEcCCeEEEEecccCC
Confidence 999999999999999987633222 2455 48888999988753
No 67
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.50 E-value=1e-12 Score=127.43 Aligned_cols=216 Identities=15% Similarity=0.131 Sum_probs=139.2
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcC-CcEEEEEcccCh-hHHHHHHHhcccCCCcccC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS-ASLNRHIARTYFGNGTNFG 141 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~G-I~~I~Iv~~~~~-~~l~~~l~~~y~~~g~~~~ 141 (497)
.+.+||||+|.|+||. ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+... .. .
T Consensus 3 ~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~----~~---~- 70 (227)
T PRK00155 3 MVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLL----AK---D- 70 (227)
T ss_pred ceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhh----cc---C-
Confidence 4689999999999994 3579999999999 59999999999865 899999998765 33322221 11 0
Q ss_pred CCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEe
Q 010922 142 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 219 (497)
Q Consensus 142 ~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~ 219 (497)
..+.++... .+.+++++.+...++ ..+.++++.||. +....+..+++.+.+.+ ..++..
T Consensus 71 -~~~~~~~~~-----------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~ 131 (227)
T PRK00155 71 -PKVTVVAGG-----------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAV 131 (227)
T ss_pred -CceEEeCCc-----------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEE
Confidence 113333211 256899999887763 236799999997 34567888888876543 444444
Q ss_pred eeCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCC
Q 010922 220 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 299 (497)
Q Consensus 220 ~~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~ 299 (497)
+..+ .+. ..+++|.+.++.++.. ....-+.|.|+.+.|.+++..... .
T Consensus 132 ~~~~----~~~--~v~~~g~~~~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~~-~ 179 (227)
T PRK00155 132 PVKD----TIK--RSDDGGGIVDTPDRSG-------------------------LWAAQTPQGFRIELLREALARALA-E 179 (227)
T ss_pred eccc----cEE--EEcCCCceeecCChHH-------------------------heeeeCCccchHHHHHHHHHHHHh-c
Confidence 4433 122 2255566666532111 111223789999998887765332 2
Q ss_pred CchhhhhHHhhhc-cCceEEEEeccEEEecCCHHHHHHHHHHhh
Q 010922 300 NDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 300 ~d~~~~ii~~li~-~~~v~~~~~~g~w~dIgt~~~y~~An~~l~ 342 (497)
..+..+....+.+ ..++..+..+..+.||+|++||..|...+.
T Consensus 180 ~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 180 GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 2233333332222 245766666667889999999999987654
No 68
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.49 E-value=9.4e-13 Score=126.54 Aligned_cols=212 Identities=14% Similarity=0.134 Sum_probs=139.7
Q ss_pred EEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcC-CcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 66 YAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 66 ~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~G-I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
.+||||+|.|+||.+ ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+ .. .. .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~-~~--~~---~ 70 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KY-GL--SK---V 70 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hc-cc--CC---C
Confidence 589999999999975 279999999999 59999999999976 99999999887654443331 11 00 11 1
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
+.++... .+..++++.+...++. ...+.++++.||. +....+..+++.+.+.+ ..+.+.+..
T Consensus 71 ~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~ 134 (218)
T cd02516 71 VKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVT 134 (218)
T ss_pred eEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEecc
Confidence 3333221 2457889998877631 1346799999996 44556888888876544 334444433
Q ss_pred CCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCch
Q 010922 223 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 302 (497)
Q Consensus 223 ~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~ 302 (497)
+ ++...|++|.+.++.+..+. ....++ ++|+.+.|.+++...... ..+
T Consensus 135 ~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~~ 182 (218)
T cd02516 135 D------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEE-GEE 182 (218)
T ss_pred c------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhc-CCC
Confidence 2 23346778889888764221 345666 999999998887654332 223
Q ss_pred hhhhHHhhhcc-CceEEEEeccEEEecCCHHHHHH
Q 010922 303 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYE 336 (497)
Q Consensus 303 ~~~ii~~li~~-~~v~~~~~~g~w~dIgt~~~y~~ 336 (497)
.++...-+.+. .++....-+..-+||+||+||..
T Consensus 183 ~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 183 FTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 34433332222 45666665555669999999853
No 69
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.47 E-value=1.9e-12 Score=121.37 Aligned_cols=118 Identities=10% Similarity=0.166 Sum_probs=87.3
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
+||||+|.|+||. .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+++.+ .++ +.
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~---v~ 65 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSN---IT 65 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCC---eE
Confidence 7999999999996 48999999999 59999999999999999999999887654443321 122 44
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCee--eccCHHHHHHHHHHcCCC
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDAD 213 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l--~~~dl~~ll~~h~~~~a~ 213 (497)
++.... |..|++++++.+..+ . ...+.+++++||+- ....+..+++.+...+.+
T Consensus 66 ~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 121 (188)
T TIGR03310 66 LVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDE 121 (188)
T ss_pred EEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCc
Confidence 443221 235899999988752 1 13478999999983 345678888877655443
No 70
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.46 E-value=6.6e-13 Score=124.84 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=95.0
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|.|||||||.|+||.+ .||+|+|++|+ |||+|+++++..+++++|+|+++++.+.+..|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 7899999999999975 79999999999 5999999999999999999999988777777774211
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee--ccCHHHHHHHHHHcCCCeEEEEee
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~--~~dl~~ll~~h~~~~a~~tl~~~~ 220 (497)
..+.. +.. .|.+.++..+...+. ..++|++++||+-+ ...+..+++.+...+...+.++.+
T Consensus 65 ~~~~~-~~g---------~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 KDYKN-ASG---------KGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred cEEEe-cCC---------CCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11221 111 478888888775432 24789999999854 567888998887766555444443
No 71
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.45 E-value=7.7e-12 Score=122.51 Aligned_cols=229 Identities=14% Similarity=0.200 Sum_probs=140.2
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
+||+|+|.|+||. +|+|+|++|+ |||.|+++++..+++++|+|++.. +.+.+++. . ++ ++
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~-------~g---~~ 61 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-K-------FG---IE 61 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-H-------cC---CE
Confidence 7999999999993 7999999999 599999999999899999998863 34555442 1 22 22
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeeeCCC
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGES 224 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 224 (497)
++...+. ...||.... .+...+. ....+.++++.||. +....+.++++.+.+.+++++.++.+..+.
T Consensus 62 ~v~~~~~-------~~~Gt~r~~-~~~~~l~---~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~ 130 (238)
T TIGR00466 62 VCMTSKH-------HNSGTERLA-EVVEKLA---LKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDA 130 (238)
T ss_pred EEEeCCC-------CCChhHHHH-HHHHHhC---CCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCH
Confidence 2211110 112443333 3333222 01235688999998 335567888888766667778777776542
Q ss_pred C-C--CcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCc
Q 010922 225 R-A--SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 301 (497)
Q Consensus 225 ~-~--~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d 301 (497)
. . .+...+..|.+|+..-|...+-......+ ....+|+. ..++...|+|.|++++|.++.......-+.
T Consensus 131 ~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~~~~le~ 202 (238)
T TIGR00466 131 EEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWKPCVLEE 202 (238)
T ss_pred HHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCCCCcccc
Confidence 1 1 11333444777888777655331110000 01112221 125678999999999998876542211111
Q ss_pred h-hhhhHHhhhccCceEEEEeccE-EEecCCHHHH
Q 010922 302 F-GSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 334 (497)
Q Consensus 302 ~-~~~ii~~li~~~~v~~~~~~g~-w~dIgt~~~y 334 (497)
. .-+.+..+-...+|.....+.. -..|+||+|+
T Consensus 203 ~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 203 IEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1 1144555555678888887655 4589999987
No 72
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.45 E-value=4.4e-12 Score=131.86 Aligned_cols=206 Identities=13% Similarity=0.092 Sum_probs=136.3
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcC-CcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~G-I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
.+.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++....+.+.+.. .+.
T Consensus 5 ~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~-------~~~- 72 (378)
T PRK09382 5 DISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP-------EIK- 72 (378)
T ss_pred cceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc-------cCC-
Confidence 4689999999999983 4689999999999 59999999999987 799999998765543332211 111
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe-ee-ccCHHHHHHHHHHcCCCeEEEEee
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~ 220 (497)
.+.++... .+..++++.++..++ .+.++|..||. +. ...+..+++...+ ++.++.+.+
T Consensus 73 -~v~~v~gG-----------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~p 132 (378)
T PRK09382 73 -FVTLVTGG-----------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALP 132 (378)
T ss_pred -eEEEeCCC-----------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEE
Confidence 13333211 246788999887774 26789999985 33 3456667766543 457777888
Q ss_pred eCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCC
Q 010922 221 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 300 (497)
Q Consensus 221 ~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~ 300 (497)
+.+ ...|+...+|. ..+..+ ++|.... .+.+....+ ...
T Consensus 133 v~D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~~----~~~ 171 (378)
T PRK09382 133 VAD--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAAD----GRG 171 (378)
T ss_pred ecc--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHHh----CCC
Confidence 776 34566545554 355444 6665432 111221111 112
Q ss_pred chhhhhHHhhhcc-CceEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010922 301 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 343 (497)
Q Consensus 301 d~~~~ii~~li~~-~~v~~~~~~g~w~dIgt~~~y~~An~~l~~ 343 (497)
+ .+|..+.+... .+|..+.-++.|.+|+||+||..|+..+..
T Consensus 172 ~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 172 D-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred C-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 2 34444444433 678888888999999999999999887643
No 73
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.45 E-value=6.9e-13 Score=121.22 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=92.8
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 146 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~Ve 146 (497)
+||||||.|+||. .||+|+|++|+ |||+|+++.+.++|+++|+|++++ +.+..++. +++ ++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~--------~~~---~~ 61 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE--------RYG---IK 61 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT--------TTT---SE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh--------ccC---ce
Confidence 7999999999996 39999999999 699999999999999999999998 33444442 122 34
Q ss_pred EeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee--ccCHHHHHHHHHHcCCCeEEEEe
Q 010922 147 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCA 219 (497)
Q Consensus 147 Il~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~--~~dl~~ll~~h~~~~a~~tl~~~ 219 (497)
++.... |..|++.+|+.+...+. ..++|++++||+.+ ...+..+++.+.++++++.+...
T Consensus 62 ~v~~~~--------~~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 62 VVVDPE--------PGQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEE-ST--------SSCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred EEEecc--------ccCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 444321 12699999999987762 35899999999954 45678888888777776665443
No 74
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.44 E-value=6.7e-12 Score=120.86 Aligned_cols=215 Identities=18% Similarity=0.241 Sum_probs=136.3
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcC-CcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~G-I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
+.|||||+|.++||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ + +..
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~-~-------~~~ 64 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK-Y-------GAE 64 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH-h-------CCC
Confidence 579999999999983 4999999999 59999999999987 888887763 3445444421 1 110
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
+.++.+.... ....|+.++++.+...++.. ....+.++++.||. +....+.++++.+.+.+++.++.+.+.
T Consensus 65 -~~~~~~~~~~-----~~~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~ 137 (223)
T cd02513 65 -VPFLRPAELA-----TDTASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEF 137 (223)
T ss_pred -ceeeCChHHC-----CCCCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 1111111000 00148899999998877520 01236899999999 556789999999888778877777765
Q ss_pred CCCCCCcceEEEECCCC-CEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCC
Q 010922 222 GESRASDYGLVKIDNMG-RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 300 (497)
Q Consensus 222 ~~~~~~~~g~v~~d~~g-~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~ 300 (497)
.+. .-++.. .+++| .+..+.++..... . +. | ..+..++|+|+++++.|.+. ..
T Consensus 138 ~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~-q--~~--------~-----~~~~~n~~~y~~~~~~~~~~-------~~ 191 (223)
T cd02513 138 HRF--PWRALG-LDDNGLEPVNYPEDKRTRR-Q--DL--------P-----PAYHENGAIYIAKREALLES-------NS 191 (223)
T ss_pred CcC--cHHhee-eccCCceeccCcccccCCc-C--CC--------h-----hHeeECCEEEEEEHHHHHhc-------CC
Confidence 442 223332 22233 2222222111100 0 00 0 12567889999999987542 11
Q ss_pred chhhhhHHhhhccCceEEEEecc-EEEecCCHHHHHHHHH
Q 010922 301 DFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANM 339 (497)
Q Consensus 301 d~~~~ii~~li~~~~v~~~~~~g-~w~dIgt~~~y~~An~ 339 (497)
.+ ..++..|.... .-.||+|++|+..|..
T Consensus 192 ~~----------g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 192 FF----------GGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred cc----------CCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 11 44777777765 5899999999988864
No 75
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.43 E-value=1.3e-12 Score=120.52 Aligned_cols=126 Identities=14% Similarity=0.293 Sum_probs=92.2
Q ss_pred CCCCCCCCCCccCCCeEEc-CeEee-ceEECCCCEEc-ceEEe-eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHh
Q 010922 352 DPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASL 427 (497)
Q Consensus 352 ~~~~~i~~~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~-~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~ 427 (497)
++.+.+.+.+.+.+++.|. ++.|. +++||++|.|+ ++.+. +++||++|.|++++.|.+++++.+
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~------------ 76 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG------------ 76 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC------------
Confidence 3444444455566666663 45554 58889999997 56776 699999999999999999988877
Q ss_pred hcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCC------------------------CCCCCCCCCCCeEEccccE
Q 010922 428 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD------------------------DVQEADRPELGFYIRSGIT 483 (497)
Q Consensus 428 ~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~------------------------~v~~~~~~~~~~~i~~g~~ 483 (497)
+.|++++.+.+|+|++++.|++++++.+.. -+++...++.++.|..|.
T Consensus 77 -------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~- 148 (163)
T cd05636 77 -------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGV- 148 (163)
T ss_pred -------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCc-
Confidence 899999999999999999999999997632 223333444444444442
Q ss_pred EEccCcEECCCccC
Q 010922 484 IIMEKATIEDGMVI 497 (497)
Q Consensus 484 vi~~~~~i~~g~~i 497 (497)
.|+++++|++|+++
T Consensus 149 ~ig~~~~i~agsvV 162 (163)
T cd05636 149 KIGPGSWVYPGCVV 162 (163)
T ss_pred EECCCCEECCCcEe
Confidence 36888888888764
No 76
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.43 E-value=8.6e-13 Score=124.93 Aligned_cols=142 Identities=24% Similarity=0.292 Sum_probs=98.0
Q ss_pred CCCCCCCCCccCCCeEE-cCeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcc-eEEeCCccccchhHH-HHhh
Q 010922 353 PKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD-TVMLGADYYQTESEI-ASLL 428 (497)
Q Consensus 353 ~~~~i~~~~~~~~~~~i-~~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~-s~i~~~~~~~~~~~~-~~~~ 428 (497)
+.+.+.+.+.++++++| .++.|.++.|+++|.|+ .+.+.+++||+++.|++++.|.. +++.++..++...++ .+.+
T Consensus 26 ~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~i 105 (193)
T cd03353 26 PGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTI 105 (193)
T ss_pred CCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceE
Confidence 33333344445555555 34677778888889888 57888888888888888888874 433334444444555 5566
Q ss_pred cCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCC-CCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 429 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE-ADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 429 ~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
+++ +.|++.+.+.+|+||+++.||+++++.+.+++.. ...++++++|+.+.+ .|++++.|++|+++
T Consensus 106 g~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 106 GEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred cCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 666 7788888888999999999999999988665432 345555666655533 36888888888864
No 77
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.37 E-value=2.9e-11 Score=117.63 Aligned_cols=217 Identities=12% Similarity=0.099 Sum_probs=133.5
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhc-CCcEEEEEcccChh-HHHHHHHhcccCCCcccCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSA-SLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~-GI~~I~Iv~~~~~~-~l~~~l~~~y~~~g~~~~~ 142 (497)
+.+||||+|.|+||. ...||+|+|++|+ |||.|+++++.++ .+++|+|+++.... .+.+.+ +.| + +..
T Consensus 3 ~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~-~~~-~----~~~ 72 (230)
T PRK13385 3 YELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLM-KQL-N----VAD 72 (230)
T ss_pred eEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHH-Hhc-C----cCC
Confidence 578999999999995 3579999999999 5999999999876 59999999976542 233333 222 1 101
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe-ee-ccCHHHHHHHHHHcCCCeEEEEee
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l~-~~dl~~ll~~h~~~~a~~tl~~~~ 220 (497)
..++++... .+-.++++.+...++ ..+.++++.||. +. ...+..+++.+.+.++ .+.+.+
T Consensus 73 ~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~~~ 134 (230)
T PRK13385 73 QRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICAVE 134 (230)
T ss_pred CceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEEEe
Confidence 123444211 133588888887664 134578889998 33 4467788887766543 333333
Q ss_pred eCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCC
Q 010922 221 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 300 (497)
Q Consensus 221 ~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~ 300 (497)
..+ .+... .+|.+....++ . . ...--+.|.|+.+.|.+..+..... .
T Consensus 135 ~~d------ti~~~-~~~~~~~~i~r--~-~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~-~ 181 (230)
T PRK13385 135 VKD------TVKRV-KDKQVIETVDR--N-E----------------------LWQGQTPQAFELKILQKAHRLASEQ-Q 181 (230)
T ss_pred ccc------eEEEE-cCCeeEeccCH--H-H----------------------HhhhcCCceeeHHHHHHHHHHHHhc-C
Confidence 322 12222 23544333321 1 1 1222346889988887766532212 2
Q ss_pred chhhhhHHhhhc-cCceEEEEeccEEEecCCHHHHHHHHHHhh
Q 010922 301 DFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 301 d~~~~ii~~li~-~~~v~~~~~~g~w~dIgt~~~y~~An~~l~ 342 (497)
.+.++....+.+ ..++..+.-+.....|+||+|+..|...+.
T Consensus 182 ~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 182 FLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 223442222222 356777777778899999999999986654
No 78
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.34 E-value=1e-11 Score=126.75 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=38.5
Q ss_pred EeCCCcEee-ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEE-----EccCcEECCCccC
Q 010922 436 GVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGMVI 497 (497)
Q Consensus 436 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v-----i~~~~~i~~g~~i 497 (497)
.||++++|. .+.|++|++||++++|.+..++....++++++.++.+..| ||++++|++|++|
T Consensus 219 ~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 219 IIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred eecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 444444443 3566677777777777777666666666666666554332 5667777666653
No 79
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.34 E-value=1e-11 Score=115.72 Aligned_cols=119 Identities=15% Similarity=0.262 Sum_probs=88.3
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
+.+||||+|.|+||.+ ||+|+|++|+ |||+|+++.+..+++++|+|++++....+..++. .++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~--- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA--------GLP--- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc--------CCC---
Confidence 4689999999999975 9999999999 5999999999999999999999987654433331 122
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCC
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA 212 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a 212 (497)
+.++.... +..|++.+++.+...+.. ..+.+++++||+ +....+..+++.+.+.++
T Consensus 64 ~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 64 VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 33333221 125999999999877641 247899999998 335567788877654443
No 80
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.31 E-value=3.6e-11 Score=120.16 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=88.6
Q ss_pred cCCHHHHHHHHHHhhcCCCC-cc------ccCCCCCCCCCCccCCCeEEc-CeEee-------ceEECCCCEEcc-eE--
Q 010922 328 IGTIKSFYEANMALTKESPA-FH------FYDPKTPFYTSPRFLPPTKID-NCRIK-------DAIISHGCFLRE-CT-- 389 (497)
Q Consensus 328 Igt~~~y~~An~~l~~~~~~-~~------~~~~~~~i~~~~~~~~~~~i~-~~~i~-------~s~I~~~~~i~~-~~-- 389 (497)
..+|.-.+....+++.+.+. +. .++|++.+..++.++|++.|. ++.|. +++||++|.||+ +.
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~ 157 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIH 157 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEc
Confidence 44477777777777765433 11 345555555555556666663 23332 344444444442 22
Q ss_pred ----Ee-eeEEcCCcEECCCCEEcceEE--------------eCCccccchhHH--HHhhcCCCcc-eEeCCCcEeec-e
Q 010922 390 ----VE-HSIVGERSRLDYGVELKDTVM--------------LGADYYQTESEI--ASLLAEGKVP-IGVGRNTKIRN-C 446 (497)
Q Consensus 390 ----v~-~svIg~~~~i~~~~~i~~s~i--------------~~~~~~~~~~~~--~~~~~~~~~~-~~Ig~~~~i~~-~ 446 (497)
|. +++||++|.|++|++|....- .|..+++.++|| .+-+-.|... +.||++++|.| +
T Consensus 158 ~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~v 237 (338)
T COG1044 158 PNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLV 237 (338)
T ss_pred CCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEccee
Confidence 21 244444555554444432211 122233444444 1111111111 45566666643 5
Q ss_pred EEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 447 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 447 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
-|++||+||+++.|.+..++...+.+|.++.|++. +-|.....|+||+.|
T Consensus 238 qIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~-vgI~gh~~IgD~~~I 287 (338)
T COG1044 238 QIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQ-VGIAGHLEIGDGVTI 287 (338)
T ss_pred EEccccEECCCcEEeccceeeccceECCeEEECcc-eeecCceEEcCCCEE
Confidence 67777777777777777777777777777766554 445777777777654
No 81
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.31 E-value=4.1e-11 Score=111.86 Aligned_cols=107 Identities=10% Similarity=0.089 Sum_probs=80.5
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|.+||||+|.|+||.+ ||+|+|++|+ |||+|+++.+... +++|+|++++..+. . . .++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~-~-------~~~--- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----Y-A-------LLG--- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----H-h-------hcC---
Confidence 4689999999999973 9999999999 5999999999988 89999999987543 1 1 112
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee--ccCHHHHHHHH
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSH 207 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~--~~dl~~ll~~h 207 (497)
++++.... |..|...+|+.+...++ .+.++++.||+-+ ...+..+++.+
T Consensus 59 ~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 23333221 23689999999887664 4789999999943 34566666655
No 82
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.29 E-value=1.9e-11 Score=121.43 Aligned_cols=145 Identities=14% Similarity=0.219 Sum_probs=76.1
Q ss_pred cCCCCCCCCCCccCCCeEEc-CeEee-ceEECCCCEEc-ceEEe-eeEEcCCcEECCCCEEcc------------eEEeC
Q 010922 351 YDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD------------TVMLG 414 (497)
Q Consensus 351 ~~~~~~i~~~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~-~svIg~~~~i~~~~~i~~------------s~i~~ 414 (497)
++|.+.+.+++.+++++.|. .|.|. ++.||++|.|+ .+.|. +++||++|+|+++|.|.. .+.+|
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 34444444444444444442 23332 35555555555 23333 456666666666666643 22222
Q ss_pred C-ccccchhHHHH-h-hcCCCcceEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEE-----E
Q 010922 415 A-DYYQTESEIAS-L-LAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----I 485 (497)
Q Consensus 415 ~-~~~~~~~~~~~-~-~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v-----i 485 (497)
+ ..++..+.|.. . ...+ .+.||+++.|. +|.|+++|.||+++++.+...+.....+++++.|+.+.++ |
T Consensus 85 ~~~~I~e~~~I~~~~~~~~~--~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~I 162 (262)
T PRK05289 85 DNNTIREFVTINRGTVQGGG--VTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRI 162 (262)
T ss_pred CCCEECCCeEEecccccCCC--eeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEE
Confidence 2 22333333211 0 0011 15667766663 5666666677777777666666666666666666655433 5
Q ss_pred ccCcEECCCccC
Q 010922 486 MEKATIEDGMVI 497 (497)
Q Consensus 486 ~~~~~i~~g~~i 497 (497)
|+++.|++|++|
T Consensus 163 g~~~~Ig~gs~V 174 (262)
T PRK05289 163 GAHAMVGGMSGV 174 (262)
T ss_pred CCCCEEeeecce
Confidence 777777777764
No 83
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.26 E-value=5.6e-11 Score=117.56 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=38.1
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
+.||+++.|. ++.|++++.||+++.|.+...+.+...+++++.|..+.+ .||++++|++|++|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEE
Confidence 6666666663 555555666666666655555555555555555554433 25777777777764
No 84
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.26 E-value=1.9e-10 Score=108.76 Aligned_cols=112 Identities=16% Similarity=0.093 Sum_probs=79.7
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
..|.+||||+|.|+||. ..||+|+|++|+ |||+|+++.+. .++++|+|+++...+.+ .+ ++
T Consensus 2 ~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~--------~~- 62 (193)
T PRK00317 2 PPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----AA--------FG- 62 (193)
T ss_pred CCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh--------cC-
Confidence 35799999999999995 379999999999 59999999998 78999999987653321 11 11
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe-eec-cCHHHHHHHHH
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHV 208 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l~~-~dl~~ll~~h~ 208 (497)
+.++.... .+..|+..+++.+....+ .+.++++.||. +.. ..+..+++.+.
T Consensus 63 --~~~v~~~~-------~~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 63 --LPVIPDSL-------ADFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred --CcEEeCCC-------CCCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 22332211 012588899998876543 47899999999 434 34666666543
No 85
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.25 E-value=3.7e-11 Score=97.54 Aligned_cols=65 Identities=15% Similarity=0.456 Sum_probs=38.6
Q ss_pred ECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCC
Q 010922 379 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 457 (497)
Q Consensus 379 I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 457 (497)
||++|.|+ ++.+.+|+||++|.|++++.|++++++.+ +.||+++.|.+|+|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 34444444 23444566666666666666666666555 56666666666666666666666
Q ss_pred cEEcC
Q 010922 458 VVIVN 462 (497)
Q Consensus 458 ~~i~~ 462 (497)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 66654
No 86
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.25 E-value=7.9e-11 Score=121.54 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=40.6
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEE-----EccCcEECCCcc
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGMV 496 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v-----i~~~~~i~~g~~ 496 (497)
+.||++++|. .|.|++|++||+++.|....++....++++++.|..+..+ ||++++|+++++
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~ 293 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSG 293 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCe
Confidence 5566666664 4567777777777777776666666677776666665443 566666666654
No 87
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.22 E-value=1.4e-10 Score=114.61 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=44.3
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEE-----EccCcEECCCcc
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGMV 496 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v-----i~~~~~i~~g~~ 496 (497)
+.||+++.|. ++.|+++|.||++++|.+...+.....+++++.|+.+..+ ||+++.|++|++
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~ 169 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSR 169 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCce
Confidence 6677777764 6778888888888888887777777777777777666543 566666666654
No 88
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.22 E-value=1e-10 Score=110.69 Aligned_cols=74 Identities=20% Similarity=0.460 Sum_probs=56.8
Q ss_pred ceEECCCCEEc-ceEEe----eeEEcCCcEECCCCEE-----cceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeec
Q 010922 376 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 445 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v~----~svIg~~~~i~~~~~i-----~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 445 (497)
++.||++|.|+ +|.|. ..+||++|.|+++|+| .+++++++ +.||+++.|.+
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~I~~ 86 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN-------------------GHVGHGAILHG 86 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC-------------------CEECCCCEEcC
Confidence 45566666665 34443 4689999999999999 45666665 89999999999
Q ss_pred eEEcCCCEECCCcEEcCCCCCCC
Q 010922 446 CIIDKNVKIGKDVVIVNKDDVQE 468 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i~~~~~v~~ 468 (497)
|+|++++.||.++++.+...+++
T Consensus 87 siIg~~~~IG~ga~I~~g~~IG~ 109 (192)
T TIGR02287 87 CIVGRNALVGMNAVVMDGAVIGE 109 (192)
T ss_pred CEECCCCEECCCcccCCCeEECC
Confidence 99999999999998876544443
No 89
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.21 E-value=7.1e-10 Score=109.40 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=127.9
Q ss_pred CCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHh-cCCcEEEEEcccChhHHHHHHHhcccCCCccc
Q 010922 62 PGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 140 (497)
Q Consensus 62 ~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~-~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~ 140 (497)
++.+.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+ .++++|+|++++......+.+.+.+
T Consensus 22 ~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~------- 90 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI------- 90 (252)
T ss_pred cCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc-------
Confidence 345789999999999995 3589999999999 599999999988 4899999999876543322221211
Q ss_pred CCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe---eec-cCHHHHHHHHHHcCCCeEE
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH---LYR-MDYMDFIQSHVDRDADITI 216 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~---l~~-~dl~~ll~~h~~~~a~~tl 216 (497)
+. .+.++... .+..++++.+...+. .+..+|+.+|. +.. ..+..+++...+.+ ..+
T Consensus 91 ~~-~i~~v~gg-----------~~r~~SV~~gl~~l~------~~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i 150 (252)
T PLN02728 91 DV-PLKFALPG-----------KERQDSVFNGLQEVD------ANSELVCIHDSARPLVTSADIEKVLKDAAVHG--AAV 150 (252)
T ss_pred CC-ceEEcCCC-----------CchHHHHHHHHHhcc------CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEE
Confidence 11 12322111 234677888887664 13456777773 333 34567777666544 345
Q ss_pred EEeeeCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhC
Q 010922 217 SCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 296 (497)
Q Consensus 217 ~~~~~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~ 296 (497)
...+..+ .+...++++.|... ++-......| +| -.|+.+.|.+..+...
T Consensus 151 ~~~~~~d------tik~v~~~~~v~~t---~~R~~l~~~Q--------TP--------------Q~F~~~~l~~a~~~~~ 199 (252)
T PLN02728 151 LGVPVKA------TIKEANSDSFVVKT---LDRKRLWEMQ--------TP--------------QVIKPELLRRGFELVE 199 (252)
T ss_pred Eeecchh------hEEEecCCCceeec---cChHHeEEEe--------CC--------------ccchHHHHHHHHHHHH
Confidence 5555443 22334445544332 2211111110 11 3566676666555432
Q ss_pred CCCCchhhhhHHhhhc-cCceEEEEeccEEEecCCHHHHHHHHHHhh
Q 010922 297 PTSNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 297 ~~~~d~~~~ii~~li~-~~~v~~~~~~g~w~dIgt~~~y~~An~~l~ 342 (497)
.+.. +.+|-...+.. ..+|....-+..-+.|.||+|+..|...+.
T Consensus 200 ~~~~-~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 200 REGL-EVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred hcCC-CcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 2211 22332222221 245666555557889999999999887654
No 90
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=107.06 Aligned_cols=91 Identities=25% Similarity=0.466 Sum_probs=67.0
Q ss_pred CCCCCCCccCCCeEE-cCeEee-ceEECCCCEEcceEEeeeEEcCCcEECCCCEEcc----eEEeCCccccchhHHHHhh
Q 010922 355 TPFYTSPRFLPPTKI-DNCRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELKD----TVMLGADYYQTESEIASLL 428 (497)
Q Consensus 355 ~~i~~~~~~~~~~~i-~~~~i~-~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~----s~i~~~~~~~~~~~~~~~~ 428 (497)
..|.+++.+.|.+.| .+.+|. ++.|.++++|+ +..+.-.||++|.|.+||+|+- .+.+|++
T Consensus 12 P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlR-gD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~------------ 78 (176)
T COG0663 12 PKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLR-GDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD------------ 78 (176)
T ss_pred CCCCCceEECCCCEEEEeEEECCCCEECCceEEE-ccCCceEECCCceecCCeEEecCCCCCeEECCC------------
Confidence 344455555555554 334443 46666666666 3446779999999999999975 3455554
Q ss_pred cCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCC
Q 010922 429 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 464 (497)
Q Consensus 429 ~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~ 464 (497)
+.|||++.|-.|.|+++|.||.|++|.|..
T Consensus 79 ------vtIGH~aivHGc~Ig~~~lIGmgA~vldga 108 (176)
T COG0663 79 ------VTIGHGAVVHGCTIGDNVLIGMGATVLDGA 108 (176)
T ss_pred ------cEEcCccEEEEeEECCCcEEecCceEeCCc
Confidence 999999999999999999999999999753
No 91
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.20 E-value=1.2e-10 Score=115.33 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=34.0
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccE-----EEccCcEECCCccC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGIT-----IIMEKATIEDGMVI 497 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~-----vi~~~~~i~~g~~i 497 (497)
+.||+++.|. +|.|+++|.||+++.|.+...+.+...+++++.|+.+.+ .|+++++|++|+++
T Consensus 102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred EEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 6666666662 444444444555544444444444444555555544433 25777777777654
No 92
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.20 E-value=1e-10 Score=95.00 Aligned_cols=77 Identities=13% Similarity=0.404 Sum_probs=68.7
Q ss_pred cCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCC
Q 010922 363 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 440 (497)
Q Consensus 363 ~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 440 (497)
+++++.|. ++.|.++.|+++|.|+ ++.+.+|+|+++|.|++++.|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 35567774 5777789999999998 58899999999999999999999999888 899999
Q ss_pred cEeeceEEcCCCEECCCc
Q 010922 441 TKIRNCIIDKNVKIGKDV 458 (497)
Q Consensus 441 ~~i~~~iI~~~~~Ig~~~ 458 (497)
+.+.+|+|+++++|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999874
No 93
>PLN02296 carbonate dehydratase
Probab=99.19 E-value=9.5e-11 Score=116.26 Aligned_cols=120 Identities=16% Similarity=0.328 Sum_probs=76.5
Q ss_pred ccCCCCCCCCCCccCCCeEEcC-eEee-ceEECCCCEEcceEEeeeEEcCCcEECCCCEEc-----------ceEEeCCc
Q 010922 350 FYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELK-----------DTVMLGAD 416 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~~-~~i~-~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~-----------~s~i~~~~ 416 (497)
+++....+...+.+.|.+.+.+ ..|. ++.|+++|+|+ +.+.+++||++|.|+++|.|. ++++.++
T Consensus 48 ~~~~~p~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~-g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~- 125 (269)
T PLN02296 48 IFDKAPVVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLR-GDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN- 125 (269)
T ss_pred hcCCCCccCCCCEECCCcEEEcceEECCCCEECCCCEEE-cCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC-
Confidence 3444444555556666666532 3331 35555555554 122346899999999999996 3444443
Q ss_pred cccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCcc
Q 010922 417 YYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 496 (497)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~ 496 (497)
+.||+|+.|.+|+|+++|.||.+++|.....++ +++.|..|. +|.++++|++|++
T Consensus 126 ------------------v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig------~~a~IgagS-vV~~~~~I~~~~~ 180 (269)
T PLN02296 126 ------------------VTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVE------KHAMVAAGA-LVRQNTRIPSGEV 180 (269)
T ss_pred ------------------CEECCCceecCCEECCCcEECCCcEECCCeEEC------CCCEECCCC-EEecCCEeCCCeE
Confidence 899999999999999999999999998654444 445555442 2355555555543
No 94
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.19 E-value=1.3e-10 Score=110.03 Aligned_cols=82 Identities=20% Similarity=0.384 Sum_probs=57.0
Q ss_pred CCccCCCeEEc-CeEee-ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceE
Q 010922 360 SPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIG 436 (497)
Q Consensus 360 ~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~ 436 (497)
.+.+.+++.|. .+.|. ++.||++|+|+ ++.+.+++||++|.|++++.|.++++..+ +.
T Consensus 15 ~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~-------------------~~ 75 (193)
T cd03353 15 DVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG-------------------AT 75 (193)
T ss_pred CeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC-------------------CE
Confidence 34445555553 35553 58899999998 58888999999999999999999887766 55
Q ss_pred eCCCcEee-ceEEcCCCEECCCcEE
Q 010922 437 VGRNTKIR-NCIIDKNVKIGKDVVI 460 (497)
Q Consensus 437 Ig~~~~i~-~~iI~~~~~Ig~~~~i 460 (497)
||+++.|. +++|+++++|++++.+
T Consensus 76 Ig~~~~I~~~~~Ig~~~~Ig~~~~i 100 (193)
T cd03353 76 VGPFAHLRPGTVLGEGVHIGNFVEI 100 (193)
T ss_pred ECCccEEcCccEECCCCEECCcEEE
Confidence 55555554 4555555555554444
No 95
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.18 E-value=5.6e-10 Score=104.60 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=79.7
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
+.+||||+|.|+||. .+||+|+|++|+ |||+|+++++.. ++++|+|++++..+. +... .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-------~~~--- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQA-------GFG--- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-------cCC---
Confidence 468999999999996 369999999999 599999999976 599999998765321 1111 112
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe-eecc-CHHHHHHHHHH
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVD 209 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l~~~-dl~~ll~~h~~ 209 (497)
+.++.... .+..|+.++|+.+...++ .+.++++.||. +... .+..+++.+.+
T Consensus 62 ~~~i~~~~-------~~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 62 LPVVPDAL-------ADFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CcEEecCC-------CCCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 23333211 123699999999987764 37899999998 4444 35566665443
No 96
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.18 E-value=1.9e-10 Score=104.77 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=86.2
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
|.+||+|+|+|+||.- .=|||++++|+ |||+|+++.+.+ .+++|++++..+....++|+.+. +
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------g--- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------G--- 63 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------C---
Confidence 6799999999999972 34999999999 599999999998 89999999999988888888632 2
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-cc-CHHHHHHHHH
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSHV 208 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~~-dl~~ll~~h~ 208 (497)
++++. +++ .|.-.-++.+...+. .++|++++|+.+ +. .+..+++.+.
T Consensus 64 v~vi~---tpG-------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 VKVIE---TPG-------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEE---cCC-------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 55553 343 377778888887775 499999999966 43 3455555544
No 97
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.18 E-value=2.3e-10 Score=108.66 Aligned_cols=84 Identities=18% Similarity=0.361 Sum_probs=58.4
Q ss_pred ceEECCCCEEc-ceEEe----eeEEcCCcEECCCCEEcc-----eEEeCCccccchhHHHHhhcCCCcceEeCCCcEeec
Q 010922 376 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKD-----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 445 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v~----~svIg~~~~i~~~~~i~~-----s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 445 (497)
++.||++|.|+ ++.|. ..+||++|.|+++|.|+. ++++++ +.||+++.|.+
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~i~g 88 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN-------------------GHIGHGAILHG 88 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC-------------------CEECCCcEEee
Confidence 45555555555 33333 258889999999998865 344433 89999999999
Q ss_pred eEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEE
Q 010922 446 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 478 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 478 (497)
|+|+++|.||.++++.+...+++...+++|..|
T Consensus 89 ~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V 121 (196)
T PRK13627 89 CVIGRDALVGMNSVIMDGAVIGEESIVAAMSFV 121 (196)
T ss_pred EEECCCCEECcCCccCCCcEECCCCEEcCCCEE
Confidence 999999999999999765444444444444433
No 98
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.17 E-value=2.2e-10 Score=113.39 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=8.0
Q ss_pred eEEcCCcEECCCCEEc
Q 010922 393 SIVGERSRLDYGVELK 408 (497)
Q Consensus 393 svIg~~~~i~~~~~i~ 408 (497)
++||++|+|++++.|.
T Consensus 48 v~IG~~~~I~~~a~I~ 63 (254)
T cd03351 48 TTIGKNNRIFPFASIG 63 (254)
T ss_pred eEECCCCEEecceeec
Confidence 4555555555555553
No 99
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.16 E-value=3.9e-09 Score=102.35 Aligned_cols=214 Identities=15% Similarity=0.223 Sum_probs=139.0
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcC-CcEEEEEcccChhHHHHHHHhcccCCCcccCCCeE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 145 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~G-I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~V 145 (497)
|||+|+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.+.. +.+.+.. +.| |.. +
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a-~~~-------g~~-v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVA-KSY-------GAS-V 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHH-HHc-------CCE-e
Confidence 7999999999983 4999999999 59999999999986 6788776643 4444433 222 211 1
Q ss_pred EEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee--ccCHHHHHHHHHHcCCCeEEEEeeeCC
Q 010922 146 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 223 (497)
Q Consensus 146 eIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~--~~dl~~ll~~h~~~~a~~tl~~~~~~~ 223 (497)
.+..+.... .+..|+.++++.+...++.. ...+.|+++.+|.=+ ..++..+++.+.+.+++..+.+.+...
T Consensus 64 ~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~ 136 (222)
T TIGR03584 64 PFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF 136 (222)
T ss_pred EEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 111111000 11258899999998877421 224679999999854 458999999988877888888877543
Q ss_pred CCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCchh
Q 010922 224 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 303 (497)
Q Consensus 224 ~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d~~ 303 (497)
. + +-.+..+++|+...+...........+ -..+..+.++|+++++.|.+ . ...+
T Consensus 137 ~-~--~~~~~~~~~g~~~~~~~~~~~~~rQd~---------------~~~y~~nga~y~~~~~~~~~---~----~~~~- 190 (222)
T TIGR03584 137 P-I--QRAFKLKENGGVEMFFPEHFNTRSQDL---------------EEAYHDAGQFYWGKSQAWLE---S----GPIF- 190 (222)
T ss_pred C-h--HHheEECCCCcEEecCCCcccCCCCCC---------------chheeeCCeEEEEEHHHHHh---c----CCcc-
Confidence 1 1 222344566776665422111000000 01356799999999998753 1 1111
Q ss_pred hhhHHhhhccCceEEEEecc-EEEecCCHHHHHHHHHH
Q 010922 304 SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMA 340 (497)
Q Consensus 304 ~~ii~~li~~~~v~~~~~~g-~w~dIgt~~~y~~An~~ 340 (497)
..++..|..+. .-.||+|++|+.-|...
T Consensus 191 ---------~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 191 ---------SPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred ---------CCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 34677887765 58999999999888653
No 100
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.16 E-value=2.1e-10 Score=92.36 Aligned_cols=65 Identities=26% Similarity=0.591 Sum_probs=50.4
Q ss_pred ECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCC
Q 010922 379 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 457 (497)
Q Consensus 379 I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 457 (497)
|+++|.|+ ++.+.+|+||++|+|++++.|+++++++. +.|++++.|.+|+|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 45566665 35556688888888888888888888776 78888888888888888888888
Q ss_pred cEEcC
Q 010922 458 VVIVN 462 (497)
Q Consensus 458 ~~i~~ 462 (497)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 87764
No 101
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.15 E-value=2.1e-10 Score=114.66 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=30.9
Q ss_pred eEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 446 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
.+|++++.||+|+.|.. +.-+++.+++++.|... +-|++|++||++++|
T Consensus 203 V~Igd~VeIGanT~Idr--ga~~dTvIg~~~kIdN~-vqIaHnv~IG~~~~I 251 (338)
T COG1044 203 VIIGDDVEIGANTTIDR--GALDDTVIGEGVKIDNL-VQIGHNVRIGEHCII 251 (338)
T ss_pred EEECCceEEcccceecc--ccccCceecCCcEEcce-eEEccccEECCCcEE
Confidence 45666666666666542 22244777777777554 446888888888764
No 102
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.14 E-value=4.9e-10 Score=102.49 Aligned_cols=84 Identities=17% Similarity=0.406 Sum_probs=61.7
Q ss_pred ceEECCCCEEc-ceEEe----eeEEcCCcEECCCCEE-----cceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeec
Q 010922 376 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVEL-----KDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 445 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v~----~svIg~~~~i~~~~~i-----~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 445 (497)
++.||++|.|+ +|.+. .++||++|.|+++|.| .+++++++ +.|++++.+.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEEC
Confidence 46667777776 35554 3789999999999999 55777665 89999999999
Q ss_pred eEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEE
Q 010922 446 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 478 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 478 (497)
|+||+++.||.+++|.....+++...++.++.+
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v 111 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFV 111 (155)
T ss_pred CEECCCCEECCCCEEeCCCEECCCCEECCCCEe
Confidence 999999999999998765444444333333333
No 103
>PLN02472 uncharacterized protein
Probab=99.13 E-value=2.1e-10 Score=112.40 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=70.7
Q ss_pred HHHhhcCCCCccccCCCCCCCCCCccCCCeEEcC-eEee-ceEECCCCEEcceEEeeeEEcCCcEECCCCEEc-------
Q 010922 338 NMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLRECTVEHSIVGERSRLDYGVELK------- 408 (497)
Q Consensus 338 n~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~-~~i~-~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~------- 408 (497)
+.++..+.+-+.+.+....+.....+.|++.+.+ ..|. ++.|.++++|++ .....+||.+|.|+++|.|+
T Consensus 43 ~~~~~~~~~~~~~~~~~p~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirg-d~~~I~IG~~t~Ig~~~vI~~~~~~~~ 121 (246)
T PLN02472 43 KWDYRGQRQIIPLGQWVPKVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRG-DLNKITVGFCSNVQERCVLHAAWNSPT 121 (246)
T ss_pred ccCcCCcceEEecCCcCCccCCCCEECCCCEEecCEEECCCCEEcCCCEEec-CCcceEECCCCEECCCCEEeecCcccc
Confidence 3333444333334433444555556666666633 3332 355555555552 12246899999999999995
Q ss_pred ----ceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCC
Q 010922 409 ----DTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 467 (497)
Q Consensus 409 ----~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~ 467 (497)
+++++++ +.||+++.|.+|+|+++|.||.+++|.+...++
T Consensus 122 ~i~~~tvIG~~-------------------v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg 165 (246)
T PLN02472 122 GLPAETLIDRY-------------------VTIGAYSLLRSCTIEPECIIGQHSILMEGSLVE 165 (246)
T ss_pred CCCCCcEECCC-------------------CEECCCcEECCeEEcCCCEECCCCEECCCCEEC
Confidence 3444444 899999999999999999999999988654333
No 104
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.13 E-value=3.5e-09 Score=99.16 Aligned_cols=190 Identities=17% Similarity=0.195 Sum_probs=127.7
Q ss_pred CCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHH-HHHHHhcccCCCccc
Q 010922 62 PGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASL-NRHIARTYFGNGTNF 140 (497)
Q Consensus 62 ~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l-~~~l~~~y~~~g~~~ 140 (497)
+..+-+||||||.++||. .+|-|+|+.|+ ||++++++...+++.+++++|+++..... .+.+. ..
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~---- 68 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QL---- 68 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cC----
Confidence 346789999999999997 88999999999 59999999999999999999999973222 11111 11
Q ss_pred CCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEE
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 218 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~ 218 (497)
.++++.+. +|.+|-+.+++.+...... ..+.++++.||+ +...++..+++.++.++ . ..
T Consensus 69 ---~~~~v~np--------d~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v 129 (199)
T COG2068 69 ---GVTVVVNP--------DYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AV 129 (199)
T ss_pred ---CeEEEeCc--------chhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhccccC-c---ee
Confidence 14555432 2558999999999877752 125899999998 55667888888776552 1 11
Q ss_pred eeeCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC
Q 010922 219 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 298 (497)
Q Consensus 219 ~~~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~ 298 (497)
.+. | . .+...| .+|+++.|..+ ....
T Consensus 130 ~p~-------~-------~-------g~rG~P------------------------------v~~~~~~~~~l-~~l~-- 155 (199)
T COG2068 130 RPV-------Y-------G-------GARGHP------------------------------VLLSKDLFPAL-ARLS-- 155 (199)
T ss_pred eee-------c-------c-------CCcCCc------------------------------eeechhHHHHH-hhcC--
Confidence 111 1 0 011111 45666666543 3321
Q ss_pred CCchhhhhHHhhhccCceEEEEe---ccEEEecCCHHHHHHHHHHhh
Q 010922 299 SNDFGSEIIPAAIMEHDVQAYIF---RDYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 299 ~~d~~~~ii~~li~~~~v~~~~~---~g~w~dIgt~~~y~~An~~l~ 342 (497)
.| .-...++++.....+.+ .+.-.||+||++|.+++..+.
T Consensus 156 -GD---~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 156 -GD---VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred -Cc---hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 12 12455666644444433 578999999999999997764
No 105
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.11 E-value=1.5e-10 Score=123.45 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=19.4
Q ss_pred EeeceEECCCCEEc-ceEEe-eeEEcCCcEECCCCEEcceEEe
Q 010922 373 RIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVML 413 (497)
Q Consensus 373 ~i~~s~I~~~~~i~-~~~v~-~svIg~~~~i~~~~~i~~s~i~ 413 (497)
.+.+++|+++|.|+ .+.+. +++||++|+|+++++++++.+.
T Consensus 310 ~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig 352 (451)
T TIGR01173 310 VLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIG 352 (451)
T ss_pred EEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEEC
Confidence 33344455555554 23333 3555555555555555544443
No 106
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.11 E-value=4.2e-10 Score=90.37 Aligned_cols=65 Identities=18% Similarity=0.395 Sum_probs=54.1
Q ss_pred ECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCC
Q 010922 379 ISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 457 (497)
Q Consensus 379 I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 457 (497)
||++|.|+ ++.+.+|+||++|.|++++.|.+++++++ +.|++++.|.+|+|+++++|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 45666666 35566789999999999999999988877 88999999999999999999998
Q ss_pred cEEcC
Q 010922 458 VVIVN 462 (497)
Q Consensus 458 ~~i~~ 462 (497)
+.+..
T Consensus 63 ~~i~~ 67 (79)
T cd05787 63 CTIPP 67 (79)
T ss_pred CEECC
Confidence 88764
No 107
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.10 E-value=1.2e-09 Score=101.07 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=65.0
Q ss_pred ceEECCCCEEc-ceEEe----eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcC
Q 010922 376 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 450 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v~----~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~ 450 (497)
++.||++|.|+ ++.+. .++||++|.|+++|.|.+++.++.. +. ....++++ +.|+.++.|.+++||+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~-~~----~~v~IG~~---~~i~~~~~i~~~~IGd 88 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA-EP----KPMIIGSN---NVFEVGCKCEALKIGN 88 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC-CC----CCeEECCC---CEECCCcEEEeeEECC
Confidence 45566666665 34443 3699999999999999887654220 00 00112222 5666777888899999
Q ss_pred CCEECCCcEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCcc
Q 010922 451 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 496 (497)
Q Consensus 451 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~ 496 (497)
+|.||.+++|.....++ +++.|+.| ++|.+++.|+++++
T Consensus 89 ~~~Ig~~a~I~~gv~Ig------~~~~Igag-svV~~~~~i~~~~v 127 (164)
T cd04646 89 NNVFESKSFVGKNVIIT------DGCIIGAG-CKLPSSEILPENTV 127 (164)
T ss_pred CCEEeCCCEECCCCEEC------CCCEEeCC-eEECCCcEECCCeE
Confidence 99999999887654444 44444444 22344445554443
No 108
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.10 E-value=4.2e-09 Score=100.41 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=80.0
Q ss_pred CCCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCccc
Q 010922 61 KPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 140 (497)
Q Consensus 61 ~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~ 140 (497)
.+..+.+||||||.|+||. .+|+|+|++|+ |||+|+++.+... +++|+|++++. +.+. .+. ..
T Consensus 4 ~~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~-~~~----~~---- 66 (200)
T PRK02726 4 VKNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERYQ-SLL----PP---- 66 (200)
T ss_pred cCCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHHH-hhc----cC----
Confidence 3446899999999999995 37999999999 5999999999764 78999988642 2111 111 11
Q ss_pred CCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-c-cCHHHHHHHH
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSH 207 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~-~dl~~ll~~h 207 (497)
+ +.++.... +..|...+++.+...++ .+.++|+.||+-+ . ..+..+++.+
T Consensus 67 ~---~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 118 (200)
T PRK02726 67 G---CHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQL 118 (200)
T ss_pred C---CeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHh
Confidence 1 34443221 23699999999987774 3789999999943 3 3456666654
No 109
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.09 E-value=5.9e-10 Score=120.20 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=59.7
Q ss_pred eEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHH--HHhhcCCCcceEeCCCcEeeceEEcCCCE
Q 010922 377 AIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIGVGRNTKIRNCIIDKNVK 453 (497)
Q Consensus 377 s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~--~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~ 453 (497)
+.||++|.|+ +|.|.+|+||++|.|+++++|.++++..+.+++..+++ .+.++++ +.|++++.|.+++|+++++
T Consensus 289 v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~---~~Ig~~~~i~~~~i~~~~~ 365 (481)
T PRK14358 289 TRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEG---VHIGNFVETKNARLDAGVK 365 (481)
T ss_pred cEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCC---CEECCCEEECCceecCCcc
Confidence 5567777776 46777777777777777777777665555333333333 1223333 3333333333333333333
Q ss_pred ECCCcEEcCCCCCCCCCCCCCCeEEcc------ccEEEccCcEECCCcc
Q 010922 454 IGKDVVIVNKDDVQEADRPELGFYIRS------GITIIMEKATIEDGMV 496 (497)
Q Consensus 454 Ig~~~~i~~~~~v~~~~~~~~~~~i~~------g~~vi~~~~~i~~g~~ 496 (497)
||..+.+.+ ..+++.+.+++++.+.. ..++||+++.|+++++
T Consensus 366 ig~~~~~~~-~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~ 413 (481)
T PRK14358 366 AGHLAYLGD-VTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTT 413 (481)
T ss_pred cCceEEECC-eEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCE
Confidence 333333322 23444555555555532 1235667776666654
No 110
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.09 E-value=4.2e-10 Score=120.40 Aligned_cols=82 Identities=17% Similarity=0.374 Sum_probs=59.0
Q ss_pred ccCCCeEEc-CeEee-ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeC
Q 010922 362 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVG 438 (497)
Q Consensus 362 ~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig 438 (497)
.+.+++.|. +|.|. ++.||++|.|+ +|.|++|+||++|+|++++.|.++++.++ +.||
T Consensus 271 ~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~~Ig 331 (456)
T PRK14356 271 TIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------CSVG 331 (456)
T ss_pred EECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------cEEC
Confidence 344444442 24442 57889999998 58888999999999999999988888777 6777
Q ss_pred CCcEee-ceEEcCCCEECCCcEEcC
Q 010922 439 RNTKIR-NCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 439 ~~~~i~-~~iI~~~~~Ig~~~~i~~ 462 (497)
+++.|. +++|+++++||.++.+.+
T Consensus 332 ~~~~i~~~~~ig~~~~ig~~~~i~~ 356 (456)
T PRK14356 332 PYARLRPGAVLEEGARVGNFVEMKK 356 (456)
T ss_pred CceEECCCCEECCCCEecCCceeee
Confidence 777775 677777777776665543
No 111
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.09 E-value=9.5e-10 Score=105.00 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=32.1
Q ss_pred cCCCCCCCCCCccCCCeEEc-CeEe-eceEECCCCEEc-ceEEee-eEEcCCcEECCCCEEc
Q 010922 351 YDPKTPFYTSPRFLPPTKID-NCRI-KDAIISHGCFLR-ECTVEH-SIVGERSRLDYGVELK 408 (497)
Q Consensus 351 ~~~~~~i~~~~~~~~~~~i~-~~~i-~~s~I~~~~~i~-~~~v~~-svIg~~~~i~~~~~i~ 408 (497)
+++.+.+...+.+.++++|. ++.| .++.||++|.|+ ++.+.+ ++||++|.|+++++|.
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~ 71 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIG 71 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEc
Confidence 34444444455555555553 2555 356666777666 344443 6666666666666663
No 112
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.08 E-value=3.8e-10 Score=115.36 Aligned_cols=125 Identities=16% Similarity=0.296 Sum_probs=93.2
Q ss_pred ccCCCCC-CCCCCccCCCeEEc-CeEee-ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHH
Q 010922 350 FYDPKTP-FYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIA 425 (497)
Q Consensus 350 ~~~~~~~-i~~~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~ 425 (497)
++||... +..++.+++.+.|+ ++.++ ++.||++|+|| +|.+++|.||+++.|...++|.+|.+-.+
T Consensus 257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---------- 326 (460)
T COG1207 257 LIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---------- 326 (460)
T ss_pred EeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC----------
Confidence 4555543 23445566666664 35553 57777777777 56777777777777777777777776555
Q ss_pred HhhcCCCcceEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCcc
Q 010922 426 SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 496 (497)
Q Consensus 426 ~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~ 496 (497)
+.||+-++|+ ++.|+.+++||..|.+.++ .+++....++-.||++ .-||+++.||+||+
T Consensus 327 ---------~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a-~ig~gsKa~HLtYlGD--A~iG~~~NiGAGtI 386 (460)
T COG1207 327 ---------ATVGPFARLRPGAVLGADVHIGNFVEVKKA-TIGKGSKAGHLTYLGD--AEIGENVNIGAGTI 386 (460)
T ss_pred ---------cccCCccccCCcCcccCCCeEeeeEEEecc-cccCCccccceeeecc--ceecCCceeccceE
Confidence 8999999998 8999999999999999875 5777777888888877 55688888888876
No 113
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.08 E-value=7.3e-10 Score=102.11 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=70.5
Q ss_pred cCCCCCCCCCCccCCCeEE-------cCeEee-ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccch
Q 010922 351 YDPKTPFYTSPRFLPPTKI-------DNCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTE 421 (497)
Q Consensus 351 ~~~~~~i~~~~~~~~~~~i-------~~~~i~-~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~ 421 (497)
+.+.+.+.+.+.+.++++| .++.|. +++|+++|.|+ ++.+.+|+||+++.|++++.+.++++.++
T Consensus 20 ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~------ 93 (163)
T cd05636 20 IGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN------ 93 (163)
T ss_pred EcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC------
Confidence 3444444444444444444 235554 58899999999 58899999999999999999999988777
Q ss_pred hHHHHhhcCCCcceEeCCCcEee-------------------------ceEEcCCCEECCCcEEcCC
Q 010922 422 SEIASLLAEGKVPIGVGRNTKIR-------------------------NCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 422 ~~~~~~~~~~~~~~~Ig~~~~i~-------------------------~~iI~~~~~Ig~~~~i~~~ 463 (497)
+.|++++.+. +++|++++.||.++.|...
T Consensus 94 -------------~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g 147 (163)
T cd05636 94 -------------VNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG 147 (163)
T ss_pred -------------CEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC
Confidence 7788877773 5888888888888888754
No 114
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.06 E-value=8.5e-10 Score=94.09 Aligned_cols=60 Identities=27% Similarity=0.457 Sum_probs=53.1
Q ss_pred EECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCC
Q 010922 378 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 457 (497)
Q Consensus 378 ~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 457 (497)
.|+++|. |++|+||++|+|+ ++.|.+|+++++ +.|++++.|.+|+|++++.||++
T Consensus 3 ~i~~~~~-----i~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~ 57 (104)
T cd04651 3 YIGRRGE-----VKNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRN 57 (104)
T ss_pred eecCCCE-----EEeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCC
Confidence 4455554 4589999999999 999999999988 89999999999999999999999
Q ss_pred cEEcC
Q 010922 458 VVIVN 462 (497)
Q Consensus 458 ~~i~~ 462 (497)
+.+.+
T Consensus 58 ~~i~~ 62 (104)
T cd04651 58 AVIRR 62 (104)
T ss_pred CEEEe
Confidence 99875
No 115
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.06 E-value=9.9e-10 Score=108.54 Aligned_cols=140 Identities=14% Similarity=0.206 Sum_probs=66.7
Q ss_pred CCCCCCCCCCccCCCeEEc-CeEee-ceEECCCCEEc-ceEEe-eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHh
Q 010922 352 DPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASL 427 (497)
Q Consensus 352 ~~~~~i~~~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~-~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~ 427 (497)
+|.+.+.+++.+..+++|. .|.|. ++.||++|.|+ .+.|. ++.||++|+|++++.|....- .-.|..+ +-...
T Consensus 3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq--~~~~~g~-~~~v~ 79 (255)
T PRK12461 3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQ--DFTYKGE-ESRLE 79 (255)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCc--cccccCc-cceeE
Confidence 3444444444444444443 23332 45566666665 23332 455666666666665543100 0000000 00111
Q ss_pred hcCCCcceEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEcccc-----EEEccCcEECCCccC
Q 010922 428 LAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMVI 497 (497)
Q Consensus 428 ~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----~vi~~~~~i~~g~~i 497 (497)
++++ +.|++++.|. ++.++.+++||+++.|.....+.+.+.+++++.|..+. +.|+++++|+.+++|
T Consensus 80 IG~~---~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V 152 (255)
T PRK12461 80 IGDR---NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLV 152 (255)
T ss_pred ECCc---eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEE
Confidence 2222 5555555553 23334456666666665555555566666666554433 346777777776653
No 116
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.06 E-value=1.2e-09 Score=108.62 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=27.6
Q ss_pred CCCCCCCccCCCeEEcC-eEee-ceEECCCCEEc-ceEE-eeeEEcCCcEECCCCEEcceEEe
Q 010922 355 TPFYTSPRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVML 413 (497)
Q Consensus 355 ~~i~~~~~~~~~~~i~~-~~i~-~s~I~~~~~i~-~~~v-~~svIg~~~~i~~~~~i~~s~i~ 413 (497)
..|++++.+.|.++|++ +.|. .++|++++.|+ +|.| .+++|+.+++||++|.|.....+
T Consensus 3 ~~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 65 (262)
T PRK05289 3 AKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65 (262)
T ss_pred cccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence 34666666677666643 3332 24444444444 2223 23444444444444444444343
No 117
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.05 E-value=1.2e-09 Score=111.61 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=106.0
Q ss_pred EEEecCCHHHHHHHHHHhhcCCCC-ccccCCCCCCCCCCccCCCeEEc-CeEee-ceEECCCCEEc-ceEE-eeeEEcCC
Q 010922 324 YWEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGER 398 (497)
Q Consensus 324 ~w~dIgt~~~y~~An~~l~~~~~~-~~~~~~~~~i~~~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v-~~svIg~~ 398 (497)
.+.-+++|...+..-..++...++ ...++|++.+.+++.+.++++|. ++.|. ++.||++|.|+ ++.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 466678888766555555543322 23466777777776666666663 35553 46666666666 3444 46788888
Q ss_pred cEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee---------------------ceEEcCCCEECCC
Q 010922 399 SRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR---------------------NCIIDKNVKIGKD 457 (497)
Q Consensus 399 ~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~---------------------~~iI~~~~~Ig~~ 457 (497)
|.|+++|+|.+.++++++ +.|++++.|. +++|++++.||+|
T Consensus 146 ~~I~~~~~I~~~~~IG~~------------------~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~ 207 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKN------------------VIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGAN 207 (324)
T ss_pred ceECCCcEECCCCEECCC------------------CEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCC
Confidence 888888888754455543 6777777773 4899999999999
Q ss_pred cEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 458 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 458 ~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
++|.... -+.+.+++++.|...+. |++|++||++++|
T Consensus 208 ~~I~r~~--~~~t~Ig~~~~I~n~v~-I~~~v~IG~~~~I 244 (324)
T TIGR01853 208 TTIDRGA--FDDTIIGEGTKIDNLVQ-IAHNCRIGENCII 244 (324)
T ss_pred CEEecCC--cCcceecCCcEEccCcE-ECCCCEECCCcEE
Confidence 9997643 36689999999988754 6999999988864
No 118
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.05 E-value=1e-09 Score=104.98 Aligned_cols=10 Identities=30% Similarity=0.278 Sum_probs=4.3
Q ss_pred ccCcEECCCc
Q 010922 486 MEKATIEDGM 495 (497)
Q Consensus 486 ~~~~~i~~g~ 495 (497)
|++++|++|+
T Consensus 130 g~~~~I~~gs 139 (204)
T TIGR03308 130 GNGAVIAAGA 139 (204)
T ss_pred CCCCEECCCC
Confidence 4444444443
No 119
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.03 E-value=1.4e-09 Score=87.46 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=66.2
Q ss_pred cCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCC
Q 010922 363 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 440 (497)
Q Consensus 363 ~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 440 (497)
+.+.+.|+ ++.+.+++|+++|.|+ ++.+++|+|+++|+|++++.|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 45677774 5788889999999998 68999999999999999999999998877 899999
Q ss_pred cEeec-eEEcCCCEECC
Q 010922 441 TKIRN-CIIDKNVKIGK 456 (497)
Q Consensus 441 ~~i~~-~iI~~~~~Ig~ 456 (497)
+.+.+ ++|+++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99987 99999998874
No 120
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.03 E-value=1e-08 Score=97.51 Aligned_cols=102 Identities=9% Similarity=0.141 Sum_probs=70.8
Q ss_pred CCCceEEEEecCCCCCcccCCCCCCCCccccccC-cccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcc
Q 010922 61 KPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTN 139 (497)
Q Consensus 61 ~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g-~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~ 139 (497)
.+..+.+||||||.++||. .||+|+|++| + |||+|+++++... +++|+|++++ +.+ .
T Consensus 5 ~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~---------~---- 62 (196)
T PRK00560 5 MIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF---------E---- 62 (196)
T ss_pred cccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc---------c----
Confidence 3456889999999999994 5899999999 9 5999999999877 8999999875 111 0
Q ss_pred cCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-ccCH
Q 010922 140 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDY 200 (497)
Q Consensus 140 ~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~~dl 200 (497)
+. ++++..... ...|...++..+....+ .+.++|+.||+-+ ..+.
T Consensus 63 ~~---~~~v~d~~~-------~~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~ 108 (196)
T PRK00560 63 FN---APFLLEKES-------DLFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFES 108 (196)
T ss_pred cC---CcEEecCCC-------CCCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHH
Confidence 11 233332111 12466666665543332 4789999999944 4443
No 121
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.01 E-value=1.1e-08 Score=106.45 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=81.3
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
+.+.+||||||.|+||. ..||+|+|++|+ |||+|+++.+.. .+++|+|++....+.+.+++ .+
T Consensus 4 ~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~-----~~------ 66 (366)
T PRK14489 4 SQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLF-----PG------ 66 (366)
T ss_pred CCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhc-----cC------
Confidence 35789999999999995 379999999999 599999999976 59999997775544332221 11
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe-eecc-CHHHHHHHHHHcCCC
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDAD 213 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l~~~-dl~~ll~~h~~~~a~ 213 (497)
+.++..... ...|...+++.+...++ .+.++|++||. +... .+..+++.+...+++
T Consensus 67 --~~~i~d~~~-------g~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 --LPVYPDILP-------GFQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred --CcEEecCCC-------CCCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 122221111 01488899999887654 36799999997 3343 455666654444443
No 122
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.01 E-value=5.1e-09 Score=95.73 Aligned_cols=84 Identities=14% Similarity=0.236 Sum_probs=57.6
Q ss_pred ceEECCCCEEc-ceEEee----eEEcCCcEECCCCEEcc-----eEEeCCccccchhHHHHhhcCCCcceEeCCCcEeec
Q 010922 376 DAIISHGCFLR-ECTVEH----SIVGERSRLDYGVELKD-----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 445 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v~~----svIg~~~~i~~~~~i~~-----s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 445 (497)
++.||++|.|+ ++.|.. .+||++|.|+++|.|.. +++++. +.|++++.|.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 78 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY-------------------VTIGHNAVVHG 78 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC-------------------CEECCCcEEEC
Confidence 35566666666 344443 48999999999999875 444444 88999999999
Q ss_pred eEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEE
Q 010922 446 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 478 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 478 (497)
|+|++++.|+.++.+.+...+++....+.++.+
T Consensus 79 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v 111 (154)
T cd04650 79 AKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVV 111 (154)
T ss_pred cEECCCCEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 999999999999888765444444333333333
No 123
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.01 E-value=1.1e-09 Score=116.95 Aligned_cols=65 Identities=23% Similarity=0.400 Sum_probs=41.6
Q ss_pred ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-ceEEcCCCE
Q 010922 376 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 453 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~ 453 (497)
++.||++|.|+ ++.|.+|+||++|+|. .+.+.+++++++ +.||++++|. +|+|+++++
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~-------------------~~ig~~~~i~~~~~ig~~~~ 332 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDD-------------------VSVGPFSRLREGTVLKKSVK 332 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCC-------------------cEECCCcEECCcccccCCcE
Confidence 46677777777 4666777777777774 456677777666 5566666663 466666666
Q ss_pred ECCCcEE
Q 010922 454 IGKDVVI 460 (497)
Q Consensus 454 Ig~~~~i 460 (497)
||+++.+
T Consensus 333 Ig~~~~i 339 (448)
T PRK14357 333 IGNFVEI 339 (448)
T ss_pred ecCceee
Confidence 6655444
No 124
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=6.6e-10 Score=117.85 Aligned_cols=94 Identities=13% Similarity=0.303 Sum_probs=82.1
Q ss_pred CCCCCCCCccCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCC
Q 010922 354 KTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 431 (497)
Q Consensus 354 ~~~i~~~~~~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~ 431 (497)
+..+..++.++.+|+|+ ++.|.||+||.||.|| +|.|++|.||++|+||.||.|+++++.++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 34455566778888885 6999999999999999 79999999999999999999999999988
Q ss_pred CcceEeCCCcEe-eceEEcCCCEECCCcEEcCCCCC
Q 010922 432 KVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDV 466 (497)
Q Consensus 432 ~~~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~~~v 466 (497)
|.|++|+.+ .+|||+-++++|++-++.....+
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCccccccccc
Confidence 999999999 48999999999999777655444
No 125
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.01 E-value=2.5e-09 Score=86.59 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=51.0
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECC
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 456 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 456 (497)
+.|++++.|+ .+++||++|+|++++.|++++++++ +.|++++.|.+|++++++.|++
T Consensus 6 ~~I~~~~~i~----~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIG----PNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEEC----CCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 4555666665 4678888888988999998888877 8899999999999999999998
Q ss_pred CcEEcC
Q 010922 457 DVVIVN 462 (497)
Q Consensus 457 ~~~i~~ 462 (497)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 887754
No 126
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.98 E-value=9.1e-09 Score=93.83 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=53.1
Q ss_pred ceEECCCCEEc-ceEEe----eeEEcCCcEECCCCEEcce-----EEeCCccccchhHHHHhhcCCCcceEeCCCcEeec
Q 010922 376 DAIISHGCFLR-ECTVE----HSIVGERSRLDYGVELKDT-----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN 445 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v~----~svIg~~~~i~~~~~i~~s-----~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 445 (497)
+..||++|.|+ ++.|. .++||++|.|+++|.|.++ +++.+ +.|+.++.|.+
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~~ 77 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN-------------------VTVGHGAVLHG 77 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC-------------------cEECCCcEEee
Confidence 45566666666 24443 4589999999999999875 44444 88899999988
Q ss_pred eEEcCCCEECCCcEEcCCCCCCC
Q 010922 446 CIIDKNVKIGKDVVIVNKDDVQE 468 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i~~~~~v~~ 468 (497)
|+|++++.|++++.+....-+++
T Consensus 78 ~~Ig~~~~Ig~~~~v~~~~~ig~ 100 (153)
T cd04645 78 CTIGDNCLIGMGAIILDGAVIGK 100 (153)
T ss_pred eEECCCCEECCCCEEcCCCEECC
Confidence 99999999998888864433333
No 127
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.98 E-value=3.9e-09 Score=104.49 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=6.9
Q ss_pred ceEEcCCCEECCCcEEc
Q 010922 445 NCIIDKNVKIGKDVVIV 461 (497)
Q Consensus 445 ~~iI~~~~~Ig~~~~i~ 461 (497)
+++||++|.||++++|.
T Consensus 194 Gv~IGdgavIgag~vV~ 210 (272)
T PRK11830 194 GVIVEEGSVLGMGVFLG 210 (272)
T ss_pred CCEECCCCEEcCCCEEc
Confidence 33444444444444443
No 128
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.97 E-value=2.1e-09 Score=115.17 Aligned_cols=132 Identities=16% Similarity=0.209 Sum_probs=76.6
Q ss_pred ccCCCeEEc-CeEee-ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHH--HHhhcCCCcceE
Q 010922 362 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI--ASLLAEGKVPIG 436 (497)
Q Consensus 362 ~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~--~~~~~~~~~~~~ 436 (497)
.+++++.|. +|.|. +++||++|+|+ +|.|.+|+||++|.|++++.|.++++..+..++..+.| .+.++++ +.
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---~~ 343 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEG---AH 343 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCC---ce
Confidence 345566664 46665 58899999998 58888999999999999999998877666333333333 2233333 44
Q ss_pred eCCCcEeeceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEcc------ccEEEccCcEECCCccC
Q 010922 437 VGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRS------GITIIMEKATIEDGMVI 497 (497)
Q Consensus 437 Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~------g~~vi~~~~~i~~g~~i 497 (497)
||+++.|++|+|++++.++..+.+.+ ..+++.+.+++++++.. ..++||++++||.+++|
T Consensus 344 ig~~~~i~~~~i~~~~~~~~~~~~g~-~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i 409 (456)
T PRK09451 344 VGNFVEMKKARLGKGSKAGHLTYLGD-AEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQL 409 (456)
T ss_pred eccceeeeceeeCCCCccCccccccc-cEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEE
Confidence 44444444444444444444433322 22333334444433310 02456777777776643
No 129
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=98.97 E-value=5.3e-09 Score=103.51 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCCCCCCCCCccCCCeEEcCeEeeceEECCCCEEcc-eEE-eeeEEcCCcEECCCCEEcc------------eEEeCCcc
Q 010922 352 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-CTV-EHSIVGERSRLDYGVELKD------------TVMLGADY 417 (497)
Q Consensus 352 ~~~~~i~~~~~~~~~~~i~~~~i~~s~I~~~~~i~~-~~v-~~svIg~~~~i~~~~~i~~------------s~i~~~~~ 417 (497)
++.+.+..++.+.|.++|.. ++.|+++|+|+. |.| .+++||++|+|++++.|.. .+.+|++
T Consensus 8 ~~~a~Ig~~~~I~~~~~I~~----~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~- 82 (254)
T TIGR01852 8 EPGAEIGENVEIGPFCIVGP----GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDN- 82 (254)
T ss_pred CCCCEECCCCEECCCCEECC----CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCC-
Confidence 33344444444444444432 344555555552 333 3588888888888888874 3444443
Q ss_pred ccchhHHHHhhcCCCcceEeCCCcEee--------ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEEEccCc
Q 010922 418 YQTESEIASLLAEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKA 489 (497)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~Ig~~~~i~--------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~ 489 (497)
+.|++++.|. +++||+++.|+.++.|.....+++.+..+.++.|..++ +|++++
T Consensus 83 -----------------~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~-~Igd~~ 144 (254)
T TIGR01852 83 -----------------NTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHV-EVGDYA 144 (254)
T ss_pred -----------------CEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCc-EECCCc
Confidence 6777777775 45777777777777765444455555555555554443 346666
Q ss_pred EECCCcc
Q 010922 490 TIEDGMV 496 (497)
Q Consensus 490 ~i~~g~~ 496 (497)
+|+.++.
T Consensus 145 ~Ig~~~~ 151 (254)
T TIGR01852 145 IIGGLVA 151 (254)
T ss_pred EEeccCE
Confidence 6666654
No 130
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.96 E-value=3.2e-08 Score=96.32 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=77.2
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcC-CcEEEEEcccCh--hHHHHHHHhcccCCCcccCCC
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~G-I~~I~Iv~~~~~--~~l~~~l~~~y~~~g~~~~~~ 143 (497)
|||||+|.++||. +|.|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++.. ++
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~--------~~-- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK--------LG-- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH--------cC--
Confidence 7999999999992 4999999999 59999999999987 899999998765 445554421 12
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee--ccCHHHHHHHHHHcCCCeE
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADIT 215 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~--~~dl~~ll~~h~~~~a~~t 215 (497)
++++.... | + .+......++. ...+.++++.||.=+ ...+..+++.+...+.+++
T Consensus 65 -v~~v~~~~--------~--~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 -VKVFRGSE--------E--D---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred -CeEEECCc--------h--h---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 33332211 0 1 12222222221 134679999999843 4567888888776555443
No 131
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.96 E-value=6.8e-09 Score=96.19 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=50.8
Q ss_pred eeEEcCCcEECCCCEEcc----eEEeCCccccchhHHHHhhcCCCcceEeCCCcEeec-eEEcCCCEECCCcEEcCCCCC
Q 010922 392 HSIVGERSRLDYGVELKD----TVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDV 466 (497)
Q Consensus 392 ~svIg~~~~i~~~~~i~~----s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v 466 (497)
+++||++|.|++++.|.. .+.++.+ +.|+.++.|.. |+||++|.||.++.|.+ ..+
T Consensus 42 ~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~------------------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~I 102 (167)
T cd00710 42 PIIIGANVNIQDGVVIHALEGYSVWIGKN------------------VSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKV 102 (167)
T ss_pred cEEECCCCEECCCeEEEecCCCCEEECCC------------------ceECCCCEEeCCEEECCCCEECCCCEEEC-CEE
Confidence 367777777777777742 2223332 66677777754 77777777777777763 345
Q ss_pred CCCCCCCCCeEEccccEEEccCcEECCCcc
Q 010922 467 QEADRPELGFYIRSGITIIMEKATIEDGMV 496 (497)
Q Consensus 467 ~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~ 496 (497)
++...++.++.|. + ..|++++.+++|++
T Consensus 103 g~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~ 130 (167)
T cd00710 103 GDNCVIGHNAVVD-G-VEIPPGRYVPAGAV 130 (167)
T ss_pred CCCCEEcCCCEEe-C-CEeCCCCEECCCCE
Confidence 5555555555552 2 23466676666654
No 132
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=98.95 E-value=9.4e-09 Score=96.90 Aligned_cols=121 Identities=14% Similarity=0.157 Sum_probs=82.7
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCe
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 144 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~ 144 (497)
+.+||||||.|+||. .||.|+|++|+ |||+|+++.+.+.++++|+|++++..+.+. .+.+.... ..+
T Consensus 1 ~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~~---~~~--- 67 (190)
T TIGR03202 1 IVAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLLA---DER--- 67 (190)
T ss_pred CeEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhhc---CCC---
Confidence 358999999999996 37999999999 599999999888899999999987654221 11111111 111
Q ss_pred EEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-c-cCHHHHHHHHHH
Q 010922 145 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVD 209 (497)
Q Consensus 145 VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~-~dl~~ll~~h~~ 209 (497)
++++... .|..|.+.+++.++..+.+ ...+.++++.||.=+ . ..+..+++....
T Consensus 68 ~~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~ 123 (190)
T TIGR03202 68 IMLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKR 123 (190)
T ss_pred eEEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence 3443222 1335889999998876631 235789999999833 3 345666665443
No 133
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.95 E-value=5.9e-09 Score=99.53 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCCCCCCCCCccCCCeEEc-CeEee-ceEECCCCEEc-ceEE-eeeEEcCCcEECCCCEEcceEEeC
Q 010922 352 DPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLG 414 (497)
Q Consensus 352 ~~~~~i~~~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v-~~svIg~~~~i~~~~~i~~s~i~~ 414 (497)
++...+++.+.+.++++|+ ++.|. +++|++++.|+ +|.| .+++|+.+++|++++.|.+...++
T Consensus 5 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~ 71 (205)
T cd03352 5 GENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIG 71 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEc
Confidence 3444555555555555553 34443 25555555555 2333 345566666666666665544443
No 134
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.94 E-value=7.5e-09 Score=106.87 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=98.4
Q ss_pred ecCCHHH-HHHHHHHhhcCC--CCccccCCCCCCCCCCccCCCeEEc-CeEee-ceEECCCCEEc-ceEE-eeeEEcCCc
Q 010922 327 DIGTIKS-FYEANMALTKES--PAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTV-EHSIVGERS 399 (497)
Q Consensus 327 dIgt~~~-y~~An~~l~~~~--~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v-~~svIg~~~ 399 (497)
-+++|+. +.++...|..+. .....++|.+.+.+++.+.++++|. ++.|. ++.||++|.|+ ++.| .++.||++|
T Consensus 76 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 155 (343)
T PRK00892 76 VVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADC 155 (343)
T ss_pred EeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCC
Confidence 3556654 444444443221 1123466666666666666666663 34443 35566666665 2333 346777777
Q ss_pred EECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee--------------------ceEEcCCCEECCCcE
Q 010922 400 RLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR--------------------NCIIDKNVKIGKDVV 459 (497)
Q Consensus 400 ~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~--------------------~~iI~~~~~Ig~~~~ 459 (497)
.|+++|+|.+++.++++ +.|++++.|. +++||+++.||++++
T Consensus 156 ~I~~~~~I~~~~~Ig~~------------------~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~ 217 (343)
T PRK00892 156 RLHANVTIYHAVRIGNR------------------VIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTT 217 (343)
T ss_pred EeCCCeEEcCCCEECCC------------------CEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcE
Confidence 77777777766645443 7888888883 589999999999999
Q ss_pred EcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 460 IVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 460 i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
|... ..+.+.+++++.|..++. |++|++|+++++|
T Consensus 218 I~~~--~~~~t~Ig~~~~i~~~v~-I~~~~~IG~~~~i 252 (343)
T PRK00892 218 IDRG--ALDDTVIGEGVKIDNLVQ-IAHNVVIGRHTAI 252 (343)
T ss_pred EecC--ccccceeCCCCEEeCCeE-EccCCEECCCcEE
Confidence 9764 346789999999988754 5888888888764
No 135
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.93 E-value=5.8e-09 Score=97.45 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=15.1
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 462 (497)
+.|+.++.+. +|+|+++|.||.++.+..
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 4555555553 455555666655555543
No 136
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=3.5e-09 Score=113.07 Aligned_cols=67 Identities=24% Similarity=0.406 Sum_probs=48.1
Q ss_pred ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-ceEEcCCCE
Q 010922 376 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 453 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~ 453 (497)
++.||++|.|+ ++.|.+|+||++|+|+ ++++.++++.++ +.||+++.|. +|+|+++|+
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~-------------------~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG-------------------VKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC-------------------cEECCCCEECCCCEEeCceE
Confidence 46677777776 4667777777777774 456666666555 7888888886 688888888
Q ss_pred ECCCcEEcC
Q 010922 454 IGKDVVIVN 462 (497)
Q Consensus 454 Ig~~~~i~~ 462 (497)
||+++.|.+
T Consensus 340 Ig~~~~i~~ 348 (450)
T PRK14360 340 IGNFVEIKK 348 (450)
T ss_pred ECCCEEEec
Confidence 888777654
No 137
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.92 E-value=1.2e-08 Score=93.28 Aligned_cols=95 Identities=15% Similarity=0.287 Sum_probs=73.1
Q ss_pred ccCCCCCCCCCCccCCCeEEc-CeEeec----eEECCCCEEc-ceEE-----eeeEEcCCcEECCCCEEcceEEeCCccc
Q 010922 350 FYDPKTPFYTSPRFLPPTKID-NCRIKD----AIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY 418 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~-~~~i~~----s~I~~~~~i~-~~~v-----~~svIg~~~~i~~~~~i~~s~i~~~~~~ 418 (497)
++++.+.+...+.+++++.|. +|.|.. +.||++|.|+ +|.| .+|+||++|.|++++.|.++.+.+.
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~--- 84 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN--- 84 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC---
Confidence 455566555666677777773 566653 7788888888 4677 5689999999999999998876655
Q ss_pred cchhHHHHhhcCCCcceEeCCCcEee-ceEEcCCCEECCCcEEcCC
Q 010922 419 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 463 (497)
+.||.++.|. +++|++++.|++++++...
T Consensus 85 ----------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~ 114 (155)
T cd04745 85 ----------------ALVGMNAVVMDGAVIGEESIVGAMAFVKAG 114 (155)
T ss_pred ----------------CEECCCCEEeCCCEECCCCEECCCCEeCCC
Confidence 8899999986 5899999999999888654
No 138
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.91 E-value=9.8e-09 Score=98.19 Aligned_cols=59 Identities=12% Similarity=0.298 Sum_probs=39.2
Q ss_pred ccCCCCCCCCCCccCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcc
Q 010922 350 FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKD 409 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~ 409 (497)
.+++.+.+. .+.+++++.|. +|.|.++.||++|.|+ ++.+.+++||++|.|++++.|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 344555543 34566666664 4677777777777777 46777777777777777777754
No 139
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.91 E-value=5.9e-09 Score=90.47 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=42.4
Q ss_pred ceEECCCCEEc-ceEE-eeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCE
Q 010922 376 DAIISHGCFLR-ECTV-EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVK 453 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v-~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~ 453 (497)
+++||++|.|+ .+.+ .+++||++|.|++++.|.++.+.+. .+..++.+.+++|++++.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 46777777776 3444 3577777777777777776544433 234455566666666666
Q ss_pred ECCCcEEcCC
Q 010922 454 IGKDVVIVNK 463 (497)
Q Consensus 454 Ig~~~~i~~~ 463 (497)
||.++++.+.
T Consensus 76 Ig~~~~v~~~ 85 (119)
T cd03358 76 IGANATILPG 85 (119)
T ss_pred ECcCCEEeCC
Confidence 6666666543
No 140
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.90 E-value=5.8e-09 Score=111.84 Aligned_cols=73 Identities=18% Similarity=0.335 Sum_probs=54.1
Q ss_pred eEe-eceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcC
Q 010922 372 CRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 450 (497)
Q Consensus 372 ~~i-~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~ 450 (497)
++| .++.|+++|.|+ .+++||++|.|+++|+|.+++++++ +.|++++.|.+|+|++
T Consensus 269 v~ig~~~~I~~~~~I~----~~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~ 325 (459)
T PRK14355 269 VVIGRDTTIYPGVCIS----GDTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGD 325 (459)
T ss_pred eEEcCCCEEeCCcEEe----CCCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECC
Confidence 444 246666666665 3689999999999999999988877 7888888888888888
Q ss_pred CCEECCCcEEcCCCCCC
Q 010922 451 NVKIGKDVVIVNKDDVQ 467 (497)
Q Consensus 451 ~~~Ig~~~~i~~~~~v~ 467 (497)
++.||+++.+.....++
T Consensus 326 ~~~ig~~~~i~~~~~i~ 342 (459)
T PRK14355 326 DVAIGPMAHLRPGTELS 342 (459)
T ss_pred CCEECCCCEECCCCEeC
Confidence 87777666665433333
No 141
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.90 E-value=4.1e-09 Score=112.85 Aligned_cols=65 Identities=22% Similarity=0.442 Sum_probs=39.7
Q ss_pred ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-ceEEcCCCE
Q 010922 376 DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 453 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~ 453 (497)
++.||++|.|+ ++.|.+|+||++|.|+ ++.+.+++++.+ +.||+++.|. +|+||++++
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~-------------------~~Ig~~~~i~~~~~Ig~~~~ 342 (458)
T PRK14354 283 NTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDN-------------------VTVGPFAHLRPGSVIGEEVK 342 (458)
T ss_pred ceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCC-------------------cEECCceEecCCCEEeCCcE
Confidence 46677777776 4667777777777776 355666666655 5555555554 455555555
Q ss_pred ECCCcEE
Q 010922 454 IGKDVVI 460 (497)
Q Consensus 454 Ig~~~~i 460 (497)
|+.++.|
T Consensus 343 i~~~~~i 349 (458)
T PRK14354 343 IGNFVEI 349 (458)
T ss_pred ECCceEE
Confidence 5554444
No 142
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.5e-09 Score=106.73 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=78.3
Q ss_pred CCCCCCccCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCc
Q 010922 356 PFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKV 433 (497)
Q Consensus 356 ~i~~~~~~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~ 433 (497)
-+.....+.|.++|. ++.|+.|+||.+|.|| ++.|.+|+|-++++||+||.|++|++..+
T Consensus 330 l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g------------------ 391 (433)
T KOG1462|consen 330 LVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG------------------ 391 (433)
T ss_pred ccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc------------------
Confidence 334566789999995 7999999999999999 58999999999999999999999999877
Q ss_pred ceEeCCCcEeeceEEcCCCEECCCcEEcC
Q 010922 434 PIGVGRNTKIRNCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 434 ~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 462 (497)
+.||+++++.||+||.+=++.+..+-.+
T Consensus 392 -A~Ig~gs~L~nC~Ig~~yvVeak~~~~~ 419 (433)
T KOG1462|consen 392 -AQIGSGSKLKNCIIGPGYVVEAKGKHGG 419 (433)
T ss_pred -ceecCCCeeeeeEecCCcEEcccccccc
Confidence 8999999999999999999997665544
No 143
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.89 E-value=1.4e-08 Score=96.20 Aligned_cols=95 Identities=13% Similarity=0.271 Sum_probs=69.4
Q ss_pred ccCCCCCCCCCCccCCCeEEc-CeEee----ceEECCCCEEc-ceEE-----eeeEEcCCcEECCCCEEcceEEeCCccc
Q 010922 350 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTV-----EHSIVGERSRLDYGVELKDTVMLGADYY 418 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~-~~~i~----~s~I~~~~~i~-~~~v-----~~svIg~~~~i~~~~~i~~s~i~~~~~~ 418 (497)
++++.+.+...+.+++++.|. +|.|. ..+||++|.|+ +|.| .+|+||++|.|++++.|+++++.++
T Consensus 16 ~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~--- 92 (192)
T TIGR02287 16 YVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN--- 92 (192)
T ss_pred EECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC---
Confidence 445555555545555555553 45553 24667777777 4555 5699999999999999999988776
Q ss_pred cchhHHHHhhcCCCcceEeCCCcEee-ceEEcCCCEECCCcEEcCC
Q 010922 419 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 463 (497)
+.||.++.|. +++|++++.|++++.+...
T Consensus 93 ----------------~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 93 ----------------ALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred ----------------CEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 8899999885 6899999999998887643
No 144
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.89 E-value=2.8e-08 Score=93.77 Aligned_cols=22 Identities=23% Similarity=-0.010 Sum_probs=12.6
Q ss_pred ccEEEecCCHHHHHHHHHHhhc
Q 010922 322 RDYWEDIGTIKSFYEANMALTK 343 (497)
Q Consensus 322 ~g~w~dIgt~~~y~~An~~l~~ 343 (497)
..++..++.++...+....+.+
T Consensus 60 ~~~iiai~~~~~~~~i~~~l~~ 81 (201)
T TIGR03570 60 VDLVVAIGDNKLRRRLFEKLKA 81 (201)
T ss_pred cEEEEEcCCHHHHHHHHHHHHh
Confidence 4466677666666555555443
No 145
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.88 E-value=1.1e-08 Score=81.97 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=62.5
Q ss_pred cCCCeEEc-CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCC
Q 010922 363 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 440 (497)
Q Consensus 363 ~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 440 (497)
++++++|. ++.|.++.|+++|.|+ ++.+.+|+|++++.|++++.|.+++++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 45677774 5778889999999998 58899999999999999999999988877 889988
Q ss_pred cEee-ceEEcCCCEECC
Q 010922 441 TKIR-NCIIDKNVKIGK 456 (497)
Q Consensus 441 ~~i~-~~iI~~~~~Ig~ 456 (497)
++|. +++|+++++||+
T Consensus 63 ~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPGSLISFGVVIGD 79 (79)
T ss_pred CEECCCCEEeCCcEeCc
Confidence 8885 577777777664
No 146
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.88 E-value=5.7e-09 Score=112.61 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=59.0
Q ss_pred eeceEECCCCEEc-ceEEe-eeEEcCCcEECCCCEEcceEEeCCccccchhHH-HHhhcCCCcceEeCCCcEeece--EE
Q 010922 374 IKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKIRNC--II 448 (497)
Q Consensus 374 i~~s~I~~~~~i~-~~~v~-~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~-~~~~~~~~~~~~Ig~~~~i~~~--iI 448 (497)
+.+++|+++|.|+ ++.+. +++||++++++.++.+.+++++++..++...-+ .+.++++ +.||.++.+.+. .-
T Consensus 320 ~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~---~~IG~~~~i~~~~~~~ 396 (482)
T PRK14352 320 GSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEH---SNIGASSVFVNYDGVN 396 (482)
T ss_pred eecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCC---cEECCCcEEecccccc
Confidence 3457778888887 45554 678888888888877777777665444332222 2233333 444444443210 00
Q ss_pred cCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEE
Q 010922 449 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI 484 (497)
Q Consensus 449 ~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v 484 (497)
+.++.||+++.|.....+-....++++++|+.|.+|
T Consensus 397 ~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v 432 (482)
T PRK14352 397 KHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVI 432 (482)
T ss_pred CCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEE
Confidence 122444444444444444555666666666666544
No 147
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.87 E-value=6.6e-09 Score=110.86 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=81.5
Q ss_pred CCCCCCCCCccCCCeEEc-CeEeeceEECCCCEEc-ceEEe-eeEEcCCcEECCCCEEcceEEeCCccccchhHH-HHhh
Q 010922 353 PKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLL 428 (497)
Q Consensus 353 ~~~~i~~~~~~~~~~~i~-~~~i~~s~I~~~~~i~-~~~v~-~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~-~~~~ 428 (497)
+...+.+.+.++.++.|. ++.|.+++||++|.|+ .+.|. +|+||++|.|++++.|.++.+..+...+....+ .+.+
T Consensus 279 ~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~i 358 (446)
T PRK14353 279 PNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATI 358 (446)
T ss_pred CCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEE
Confidence 334444444555555553 3666779999999999 56775 799999999999999988877765444333333 3455
Q ss_pred cCCCcceEeCCCcEee--------ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeE
Q 010922 429 AEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFY 477 (497)
Q Consensus 429 ~~~~~~~~Ig~~~~i~--------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~ 477 (497)
+++ +.||.++.+. +++||+++.||.+++|.....+++...++.++.
T Consensus 359 g~~---~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~ 412 (446)
T PRK14353 359 GAG---ANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSV 412 (446)
T ss_pred cCC---cEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCE
Confidence 565 7777776651 588888888888888876544444433333333
No 148
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=98.87 E-value=1.8e-07 Score=90.40 Aligned_cols=214 Identities=11% Similarity=0.101 Sum_probs=118.6
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHh-cCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~-~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
+.|||+|||.|+||. ...||.+++++|+ |+|.|+++.+.+ ..+++|+|++........+.+... .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~---~------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK---K------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH---T-------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC---C-------
Confidence 468999999999996 3689999999999 599999999988 579999999987664332333221 1
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
.+.++.-.. .=.++++.++..+.+ ..+.++|--|== +....+.++++...+ +..+.+...++
T Consensus 67 ~v~iv~GG~-----------tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~ 130 (221)
T PF01128_consen 67 KVKIVEGGA-----------TRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPV 130 (221)
T ss_dssp TEEEEE--S-----------SHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-
T ss_pred CEEEecCCh-----------hHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEec
Confidence 255554321 346788888887763 123333322211 122234556655443 24556666665
Q ss_pred CCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCc
Q 010922 222 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 301 (497)
Q Consensus 222 ~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d 301 (497)
.+ .+...+++|.|.+..+....-. -=-=-.|+.+.|.+..+........
T Consensus 131 ~D------Tik~v~~~~~v~~tldR~~l~~-------------------------~QTPQ~F~~~~l~~a~~~a~~~~~~ 179 (221)
T PF01128_consen 131 TD------TIKRVDDDGFVTETLDRSKLWA-------------------------VQTPQAFRFELLLEAYEKADEEGFE 179 (221)
T ss_dssp SS------EEEEESTTSBEEEEETGGGEEE-------------------------EEEEEEEEHHHHHHHHHTHHHHTHH
T ss_pred cc------cEEEEecCCcccccCCHHHeee-------------------------ecCCCeecHHHHHHHHHHHHhcCCC
Confidence 54 4455666777776554322110 0111367777776665543111111
Q ss_pred hhhhhHHhhhc--cCceEEEEeccEEEecCCHHHHHHHHHHh
Q 010922 302 FGSEIIPAAIM--EHDVQAYIFRDYWEDIGTIKSFYEANMAL 341 (497)
Q Consensus 302 ~~~~ii~~li~--~~~v~~~~~~g~w~dIgt~~~y~~An~~l 341 (497)
+..+. .++. ..++....-+..-+.|.||+|+.-|...|
T Consensus 180 ~tDda--sl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 180 FTDDA--SLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HSSHH--HHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred ccCHH--HHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 11111 1222 34555555455678899999998887654
No 149
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.87 E-value=1.4e-08 Score=99.78 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=16.6
Q ss_pred eEeCCCcEe-eceEEcCCCEECCCcEEcCCCCCCC
Q 010922 435 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQE 468 (497)
Q Consensus 435 ~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~~~v~~ 468 (497)
|.||.++.| .+++|++++.||++++|..+..+++
T Consensus 180 v~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~ 214 (269)
T TIGR00965 180 CFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYD 214 (269)
T ss_pred CEECCCCEEcCCCEECCCCEEeCCCEECCCCEEec
Confidence 444444444 2455555555555555554444443
No 150
>PLN02296 carbonate dehydratase
Probab=98.86 E-value=3.2e-08 Score=98.31 Aligned_cols=95 Identities=13% Similarity=0.289 Sum_probs=73.0
Q ss_pred ccCCCCCCCCCCccCCCeEE-cCeEeec----eEECCCCEEcc-eEEe-----------eeEEcCCcEECCCCEEcceEE
Q 010922 350 FYDPKTPFYTSPRFLPPTKI-DNCRIKD----AIISHGCFLRE-CTVE-----------HSIVGERSRLDYGVELKDTVM 412 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i-~~~~i~~----s~I~~~~~i~~-~~v~-----------~svIg~~~~i~~~~~i~~s~i 412 (497)
+++|.+.+...+.+++++.| .+|.|.. ..||++|.|++ |.|. +|+||++|.|+++|.|.++++
T Consensus 60 ~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~I 139 (269)
T PLN02296 60 FVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTV 139 (269)
T ss_pred EECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEE
Confidence 55666666656666777777 3566642 47888888884 5553 589999999999999988877
Q ss_pred eCCccccchhHHHHhhcCCCcceEeCCCcEe-eceEEcCCCEECCCcEEcCC
Q 010922 413 LGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 463 (497)
.++ +.||.++.| .++.|++++.|++++++...
T Consensus 140 gd~-------------------v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~ 172 (269)
T PLN02296 140 EDE-------------------AFVGMGATLLDGVVVEKHAMVAAGALVRQN 172 (269)
T ss_pred CCC-------------------cEECCCcEECCCeEECCCCEECCCCEEecC
Confidence 665 889999988 47889999999999888754
No 151
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.86 E-value=2.2e-08 Score=89.88 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=20.2
Q ss_pred eEeCCCcEe-eceEEcCCCEECCCcEEcCCCCCCCC
Q 010922 435 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEA 469 (497)
Q Consensus 435 ~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~~~v~~~ 469 (497)
+.||+++.| .++.|++++.|++++++.+...+++.
T Consensus 82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred CEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence 555555555 35666666666666666655555443
No 152
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.85 E-value=7.5e-10 Score=110.11 Aligned_cols=62 Identities=6% Similarity=0.110 Sum_probs=52.6
Q ss_pred EEEEecCCCCCcccCCCCCCCCcccccc---CcccchhHhHHHHHh--------cCCcEEEEEcccChhHHHHHHHh
Q 010922 66 YAVMTSKHPNEVMTLAPPRAATPAVPVA---GCYRLIDIPMSNCIN--------SGINKIFVLTQFNSASLNRHIAR 131 (497)
Q Consensus 66 ~aVIlaaG~G~Rl~Plt~~~PK~LlPI~---g~p~LId~~L~~l~~--------~GI~~I~Iv~~~~~~~l~~~l~~ 131 (497)
.+||||+|.|||| +...||+|+||+ |+ |++++.++++.. .+|..+++...+.++.+.+++.+
T Consensus 2 a~viLaGG~GtRL---g~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~ 74 (266)
T cd04180 2 AVVLLAGGLGTRL---GKDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEK 74 (266)
T ss_pred EEEEECCCCcccc---CCCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHH
Confidence 5899999999998 478999999999 99 699999999976 35767777777778889898864
No 153
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.84 E-value=2.3e-08 Score=80.88 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=61.9
Q ss_pred CCCeEE-cCeEe-eceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCC
Q 010922 364 LPPTKI-DNCRI-KDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 440 (497)
Q Consensus 364 ~~~~~i-~~~~i-~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 440 (497)
.|+++| .++.| .+++|+++|.|+ ++.+.+|+|+++|+|++++.|.+++++.+ +.|+++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~ 63 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRW 63 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCC
Confidence 345556 34555 368899999997 68899999999999999999999998877 899999
Q ss_pred cEeec-eEEcCCCEECC
Q 010922 441 TKIRN-CIIDKNVKIGK 456 (497)
Q Consensus 441 ~~i~~-~iI~~~~~Ig~ 456 (497)
+.+.+ ++|+++++|++
T Consensus 64 ~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 64 TRLENVTVLGDDVTIKD 80 (80)
T ss_pred cEEecCEEECCceEECC
Confidence 99986 88888888874
No 154
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.84 E-value=2.4e-08 Score=92.45 Aligned_cols=110 Identities=14% Similarity=0.234 Sum_probs=77.9
Q ss_pred ccCCCCCCCCCCccCCCeEEc-CeEee-----ceEECCCCEEcc-eEEe-----eeEEcCCcEECCCCEEcceEEeCCcc
Q 010922 350 FYDPKTPFYTSPRFLPPTKID-NCRIK-----DAIISHGCFLRE-CTVE-----HSIVGERSRLDYGVELKDTVMLGADY 417 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~-~~~i~-----~s~I~~~~~i~~-~~v~-----~svIg~~~~i~~~~~i~~s~i~~~~~ 417 (497)
++++.+.+....++++.+.|. ++.|. .+.||++|.|++ +.+. .+.||++|.|++++.|.+.+.++++
T Consensus 10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~- 88 (167)
T cd00710 10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN- 88 (167)
T ss_pred EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC-
Confidence 345555555555556666663 45553 267888999884 5552 5789999999999999886666665
Q ss_pred ccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEE
Q 010922 418 YQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 478 (497)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 478 (497)
+.||.++.|.+|.||+++.||.++.|.+ ..+++....+++.++
T Consensus 89 -----------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~-~~i~~~~~v~~~~~v 131 (167)
T cd00710 89 -----------------CFIGFRSVVFNAKVGDNCVIGHNAVVDG-VEIPPGRYVPAGAVI 131 (167)
T ss_pred -----------------CEECCCCEEECCEECCCCEEcCCCEEeC-CEeCCCCEECCCCEE
Confidence 9999999999999999999999999963 334444333333333
No 155
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=98.84 E-value=4.8e-07 Score=87.46 Aligned_cols=219 Identities=16% Similarity=0.125 Sum_probs=129.3
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhc-CCcEEEEEcccCh-hHHHHHHHhcccCCCccc
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNF 140 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~-GI~~I~Iv~~~~~-~~l~~~l~~~y~~~g~~~ 140 (497)
..+.+||+|||.|+||.. ..||.+++++|+ ||++|+++.+..+ .|++|+|+++... ..+.++.. + ..
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~-~~---- 71 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L-SA---- 71 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h-cc----
Confidence 367899999999999875 799999999999 5999999999875 5899999998743 33333331 1 11
Q ss_pred CCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCC--eeeccCHHHHHHHHHHcCCCeEEEE
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--HLYRMDYMDFIQSHVDRDADITISC 218 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD--~l~~~dl~~ll~~h~~~~a~~tl~~ 218 (497)
...|+++..- ..-.++++..+..+.. ...+-|||--+= .+....+.++++.. .++.+.+..
T Consensus 72 -~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai~a 134 (230)
T COG1211 72 -DKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAILA 134 (230)
T ss_pred -CCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhh--ccCCcEEEE
Confidence 1225555432 2347788888877751 112333333222 12233455666322 334456666
Q ss_pred eeeCCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCC
Q 010922 219 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 298 (497)
Q Consensus 219 ~~~~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~ 298 (497)
.++.+ .+...++++.|.+.......- ..-+| -.|+.+.|.+.++.....
T Consensus 135 lpv~D------Tik~~~~~~~i~~t~~R~~l~-----------~~QTP--------------Q~F~~~~L~~a~~~a~~~ 183 (230)
T COG1211 135 LPVTD------TLKRVDADGNIVETVDRSGLW-----------AAQTP--------------QAFRLELLKQALARAFAE 183 (230)
T ss_pred eeccC------cEEEecCCCCeeeccChhhhh-----------hhhCC--------------ccccHHHHHHHHHHHHhc
Confidence 66654 344455566666654432211 11122 246677776665544322
Q ss_pred CCchhhh--hHHhhhccCceEEEEeccEEEecCCHHHHHHHHHHhh
Q 010922 299 SNDFGSE--IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 299 ~~d~~~~--ii~~li~~~~v~~~~~~g~w~dIgt~~~y~~An~~l~ 342 (497)
..++..| ++.+. ..++....=+-+-+.|.||+|+.-|+..+.
T Consensus 184 ~~~~tDdas~~e~~--G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 184 GREITDDASAIEKA--GGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred CCCcCCHHHHHHHc--CCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 2222221 11111 345555555568899999999998887654
No 156
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.82 E-value=2.7e-08 Score=94.77 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=46.4
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEE-----EccCcEECCCcc
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGMV 496 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v-----i~~~~~i~~g~~ 496 (497)
+.||+|+-|- +|.|.++|+||.+|+++|..-+.....+++.++|++...| ||+.+.||.++.
T Consensus 107 T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~ 174 (260)
T COG1043 107 TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSA 174 (260)
T ss_pred EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccc
Confidence 5677776663 7899999999999999998888777888888877655432 666666665543
No 157
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.82 E-value=1.8e-07 Score=95.61 Aligned_cols=212 Identities=16% Similarity=0.204 Sum_probs=129.6
Q ss_pred CCCceEEEEecCCCCCcccCCCCCCCCcccccc---CcccchhHhHHHHHhcC------------CcEEEEEcc-cChhH
Q 010922 61 KPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVA---GCYRLIDIPMSNCINSG------------INKIFVLTQ-FNSAS 124 (497)
Q Consensus 61 ~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~---g~p~LId~~L~~l~~~G------------I~~I~Iv~~-~~~~~ 124 (497)
....+.+||||+|.|||| +...||+|+||+ |+ |++++.++.+...+ + .++|.|+ +.++.
T Consensus 12 ~~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~ 86 (323)
T cd04193 12 AEGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEE 86 (323)
T ss_pred hcCCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHH
Confidence 345689999999999997 678899999998 68 69999999998742 4 4557777 66788
Q ss_pred HHHHHHhc-ccCCCcccCCCeEEEe-----eC----ccCCCC--CCC-ccccChHHHHHHHHH--HhhhhccCCCCcEEE
Q 010922 125 LNRHIART-YFGNGTNFGDGFVEVL-----AA----TQTPGE--SGK-NWFQGTADAVRQFTW--VFEDAKNRNIENVAI 189 (497)
Q Consensus 125 l~~~l~~~-y~~~g~~~~~~~VeIl-----~~----~~~~~e--~~~-~~~~GTa~aL~~~~~--~i~~~~~~~~e~~LV 189 (497)
+.+++.+. ||+... ..|.++ +. .+.+.+ ... ..+.|.++....... .+++....+.+.+.+
T Consensus 87 t~~~~~~~~~fGl~~----~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v 162 (323)
T cd04193 87 TRKFFKENNYFGLDP----EQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHV 162 (323)
T ss_pred HHHHHHhCCcCCCCC----ceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEE
Confidence 88888652 344311 011111 10 000000 001 124688877765533 455555567899999
Q ss_pred EcCCee-eccCHHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEE-ECCCCCEEEEeecCCccccccccccccccCCCcc
Q 010922 190 LCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQ 267 (497)
Q Consensus 190 l~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~ 267 (497)
.+.|.+ ...-=-.++-.+.++++++.+-+.+...+ ...-|.+. .|..-+|+++.|-|....... .-+ .
T Consensus 163 ~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~~g~~~vvEysel~~~~~~~~-~~~--------g 232 (323)
T cd04193 163 YSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLVDGKPQVVEYSEISDELAEKR-DAD--------G 232 (323)
T ss_pred EecCcccccccCHHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEECCeEEEEEeecCCHHHHhcc-CcC--------C
Confidence 999995 43333467788889999998877664432 12345444 344345677777655432110 000 0
Q ss_pred ccccCCccceeeEEEEcHHHHHHHHh
Q 010922 268 EARKCPYVASMGVYVFKKDVLFKLLR 293 (497)
Q Consensus 268 ~~~~~~~l~~~Giyif~~~vL~~ll~ 293 (497)
.. ..+..+..+.+|+.++|.++++
T Consensus 233 ~l--~f~~~ni~~~~fsl~fl~~~~~ 256 (323)
T cd04193 233 EL--QYNAGNIANHFFSLDFLEKAAE 256 (323)
T ss_pred cE--ecccchHhhheeCHHHHHHHHh
Confidence 00 1233456677888888887654
No 158
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.79 E-value=7.4e-08 Score=88.07 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=74.2
Q ss_pred cccCCCCCCCCCCccCCCeEEc-CeEeec----eEECCCCEEc-ceEEee-----eEEcCCcEECCCCEEcceEEeCCcc
Q 010922 349 HFYDPKTPFYTSPRFLPPTKID-NCRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADY 417 (497)
Q Consensus 349 ~~~~~~~~i~~~~~~~~~~~i~-~~~i~~----s~I~~~~~i~-~~~v~~-----svIg~~~~i~~~~~i~~s~i~~~~~ 417 (497)
.++++.+.+...+.+++.+.|. ++.|.. +.||++|.|+ +|.+.+ ++||+++.|+.++.|.++++-++
T Consensus 7 ~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~-- 84 (154)
T cd04650 7 AYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY-- 84 (154)
T ss_pred eEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC--
Confidence 3566666666666677777774 566654 4888999998 566654 89999999999999988866555
Q ss_pred ccchhHHHHhhcCCCcceEeCCCcEe-eceEEcCCCEECCCcEEcCC
Q 010922 418 YQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 463 (497)
+.||.++.+ .+++|++++.|++++.+...
T Consensus 85 -----------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g 114 (154)
T cd04650 85 -----------------VIVGMGAILLNGAKIGDHVIIGAGAVVTPG 114 (154)
T ss_pred -----------------CEEcCCCEEeCCCEECCCCEECCCCEECCC
Confidence 899999998 47899999999988888753
No 159
>PLN02472 uncharacterized protein
Probab=98.76 E-value=6.9e-08 Score=94.70 Aligned_cols=94 Identities=6% Similarity=0.179 Sum_probs=63.6
Q ss_pred ccCCCCCCCCCCccCCCeEEc-CeEee-c---eEECCCCEEc-ceEE-----------eeeEEcCCcEECCCCEEcceEE
Q 010922 350 FYDPKTPFYTSPRFLPPTKID-NCRIK-D---AIISHGCFLR-ECTV-----------EHSIVGERSRLDYGVELKDTVM 412 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~-~~~i~-~---s~I~~~~~i~-~~~v-----------~~svIg~~~~i~~~~~i~~s~i 412 (497)
++.+.+.+...+.++..+.|. ++.+. + ..||++|.|+ +|.| .+++||++|.|+++|.|.++++
T Consensus 67 ~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~I 146 (246)
T PLN02472 67 YVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTI 146 (246)
T ss_pred EECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEE
Confidence 455555555555566666663 34442 1 4556666665 2444 2589999999999999988877
Q ss_pred eCCccccchhHHHHhhcCCCcceEeCCCcEe-eceEEcCCCEECCCcEEcC
Q 010922 413 LGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 462 (497)
.++ +.||.++.| .+++|++++.|++++.+..
T Consensus 147 gd~-------------------v~IG~~svI~~gavIg~~~~Ig~gsvV~~ 178 (246)
T PLN02472 147 EPE-------------------CIIGQHSILMEGSLVETHSILEAGSVLPP 178 (246)
T ss_pred cCC-------------------CEECCCCEECCCCEECCCCEECCCCEECC
Confidence 666 788888877 4777888887777777764
No 160
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.76 E-value=2.8e-07 Score=96.15 Aligned_cols=113 Identities=6% Similarity=0.043 Sum_probs=74.9
Q ss_pred cccCCCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCC
Q 010922 58 EKVKPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 137 (497)
Q Consensus 58 ~~~~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g 137 (497)
.+.....+.+||||||.++||. .+|+|+|++|+ |||+|+++.+.. ..++|+|+++...... ..
T Consensus 168 ~~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~~---~~------- 230 (369)
T PRK14490 168 GRAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAEQ---YR------- 230 (369)
T ss_pred cccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhhH---Hh-------
Confidence 3334456789999999999995 48999999999 599999999976 4788888776542211 11
Q ss_pred cccCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-cc-CHHHHHH
Q 010922 138 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQ 205 (497)
Q Consensus 138 ~~~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~~-dl~~ll~ 205 (497)
.++ +.++.... + ..|...++..+..... .+.++++.||+=+ .. .+..+++
T Consensus 231 -~~~---v~~i~d~~-~-------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~ 282 (369)
T PRK14490 231 -SFG---IPLITDSY-L-------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVE 282 (369)
T ss_pred -hcC---CcEEeCCC-C-------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHH
Confidence 112 33443221 1 1476777777654433 4689999999843 43 3444444
No 161
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.76 E-value=4.1e-08 Score=104.24 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=68.5
Q ss_pred ccCCCeEEcCeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCC
Q 010922 362 RFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 440 (497)
Q Consensus 362 ~~~~~~~i~~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 440 (497)
.+.+++.|+++.+.+++||++|.|+ ++.|++|+||++|.|+. +.|.++.+ +. .+.+.+ +.||++
T Consensus 284 ~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~-~~~~~~~i-~~---------~~~i~d----~~Ig~~ 348 (430)
T PRK14359 284 HIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKN-AKLNGVKA-GH---------LSYLGD----CEIDEG 348 (430)
T ss_pred EECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcc-cEeccccc-cc---------cccccC----CEECCC
Confidence 3445555545566778889999998 56777777777776664 33433332 22 122322 788888
Q ss_pred cEee-ceEEcC-------CCEECCCcEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECC
Q 010922 441 TKIR-NCIIDK-------NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIED 493 (497)
Q Consensus 441 ~~i~-~~iI~~-------~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~ 493 (497)
|.|. +|+++. .+.||+++.|+. ...+..+..|+++.+ |+.++.|-.
T Consensus 349 ~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~------~~~i~~~~~ig~~~~-i~~g~~v~~ 402 (430)
T PRK14359 349 TNIGAGTITCNYDGKKKHKTIIGKNVFIGS------DTQLVAPVNIEDNVL-IAAGSTVTK 402 (430)
T ss_pred CEECCCceEccccCccCcCCEECCCeEEcC------CCEEeCCcEECCCCE-ECCCCEEcc
Confidence 8885 555543 255555555543 345677899999854 588887643
No 162
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.76 E-value=8.9e-08 Score=88.48 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=69.8
Q ss_pred ccCCCCCCCCCCccCCCeEEc-CeEee----ceEECCCCEEc-ceEEeee-----------EEcCCcEECCCCEEcceEE
Q 010922 350 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEHS-----------IVGERSRLDYGVELKDTVM 412 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~-~~~i~----~s~I~~~~~i~-~~~v~~s-----------vIg~~~~i~~~~~i~~s~i 412 (497)
++++.+.+.+...+++++.|. ++.+. .+.||++|.|+ ++.|.++ .||+++.+..++.|.++++
T Consensus 7 ~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~I 86 (164)
T cd04646 7 VVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKI 86 (164)
T ss_pred EECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEE
Confidence 455555555666667777774 46663 36889999998 5667554 5888888888888888655
Q ss_pred eCCccccchhHHHHhhcCCCcceEeCCCcEe-eceEEcCCCEECCCcEEcCC
Q 010922 413 LGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 463 (497)
.++ +.||.++.| .++.|++++.||++++|...
T Consensus 87 Gd~-------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 87 GNN-------------------NVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred CCC-------------------CEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 554 889999888 57889999999998888754
No 163
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.75 E-value=4.3e-08 Score=93.10 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=45.9
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-ceEEcCCCEEC
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIG 455 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 455 (497)
+.|+++|.|+.....+|+||+++.|++++.|.++++.++ +.||.++.|. ++.||+++.|+
T Consensus 56 ~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~-------------------v~IG~ga~V~~g~~IG~~s~Vg 116 (196)
T PRK13627 56 ANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD-------------------ALVGMNSVIMDGAVIGEESIVA 116 (196)
T ss_pred CEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC-------------------CEECcCCccCCCcEECCCCEEc
Confidence 344444444432224578888888888888877775555 7788887774 57788888888
Q ss_pred CCcEEcCC
Q 010922 456 KDVVIVNK 463 (497)
Q Consensus 456 ~~~~i~~~ 463 (497)
+++++...
T Consensus 117 ags~V~~~ 124 (196)
T PRK13627 117 AMSFVKAG 124 (196)
T ss_pred CCCEEeCC
Confidence 88777643
No 164
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.75 E-value=7.1e-08 Score=88.81 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=55.9
Q ss_pred ceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEEC
Q 010922 376 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 455 (497)
Q Consensus 376 ~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig 455 (497)
++.|+++|+|.+ .+..++||++|.|+++|.|.++....+.- +..-...++++ +.|++++.+.+|+|++++.||
T Consensus 27 ~~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~---~~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~v~Ig 99 (161)
T cd03359 27 KTIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSKG---VAFFPLHIGDY---VFIGENCVVNAAQIGSYVHIG 99 (161)
T ss_pred ceEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCCC---ccccCeEECCc---cEECCCCEEEeeEEcCCcEEC
Confidence 456666666652 23357899999999999998764332210 00001123333 788888888888999999999
Q ss_pred CCcEEcCCCCCCCC
Q 010922 456 KDVVIVNKDDVQEA 469 (497)
Q Consensus 456 ~~~~i~~~~~v~~~ 469 (497)
++++|.....+++.
T Consensus 100 ~~~~Ig~~~~I~~~ 113 (161)
T cd03359 100 KNCVIGRRCIIKDC 113 (161)
T ss_pred CCCEEcCCCEECCC
Confidence 99888754434433
No 165
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.72 E-value=8.9e-08 Score=87.29 Aligned_cols=94 Identities=12% Similarity=0.187 Sum_probs=73.6
Q ss_pred ccCCCCCCCCCCccCCCeEEc-CeEeec----eEECCCCEEc-ceEEee-----eEEcCCcEECCCCEEcceEEeCCccc
Q 010922 350 FYDPKTPFYTSPRFLPPTKID-NCRIKD----AIISHGCFLR-ECTVEH-----SIVGERSRLDYGVELKDTVMLGADYY 418 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~-~~~i~~----s~I~~~~~i~-~~~v~~-----svIg~~~~i~~~~~i~~s~i~~~~~~ 418 (497)
++++.+.+.....+++++.|. +++|.. ++||++|.|+ ++.+.. ++||+++.|+.++.|.++++.++
T Consensus 7 ~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~--- 83 (153)
T cd04645 7 FIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN--- 83 (153)
T ss_pred EECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC---
Confidence 455666665556677777774 466643 5899999998 467766 59999999999999999877666
Q ss_pred cchhHHHHhhcCCCcceEeCCCcEee-ceEEcCCCEECCCcEEcC
Q 010922 419 QTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 462 (497)
+.|+.++.+. +++|++++.|++++++..
T Consensus 84 ----------------~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 84 ----------------CLIGMGAIILDGAVIGKGSIVAAGSLVPP 112 (153)
T ss_pred ----------------CEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 8999999996 889999999998888754
No 166
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.71 E-value=6.4e-08 Score=82.12 Aligned_cols=65 Identities=11% Similarity=0.236 Sum_probs=50.4
Q ss_pred eEECCCCEEc-ceEEe-eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEE
Q 010922 377 AIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 454 (497)
Q Consensus 377 s~I~~~~~i~-~~~v~-~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~I 454 (497)
++|+++|.|+ ++.|. +++||++|+|+. .|.++++++. +.|+++++|.+++||+++.|
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~i 88 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCNL 88 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCEE
Confidence 5566666665 34443 478888888863 6788888877 78999999999999999999
Q ss_pred CCCcEEcC
Q 010922 455 GKDVVIVN 462 (497)
Q Consensus 455 g~~~~i~~ 462 (497)
|+++.+.|
T Consensus 89 g~~~~~~~ 96 (101)
T cd05635 89 GAGTNNSD 96 (101)
T ss_pred CCCceecc
Confidence 99988876
No 167
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.70 E-value=9.2e-08 Score=93.21 Aligned_cols=94 Identities=16% Similarity=0.273 Sum_probs=63.8
Q ss_pred cCCCCCCCCCCccCCCeEEc-CeEee-ceEECCCCEEc-ceEEe-eeEEcCCcEECCCCEEcc--------eEEeCCccc
Q 010922 351 YDPKTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIVGERSRLDYGVELKD--------TVMLGADYY 418 (497)
Q Consensus 351 ~~~~~~i~~~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~-~svIg~~~~i~~~~~i~~--------s~i~~~~~~ 418 (497)
+++.+.+...+.+++++.|. ++.|. ++.||++|.|+ ++.+. +|+||++|.|+.++.|.+ .++.+.+
T Consensus 89 I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~-- 166 (231)
T TIGR03532 89 IEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDN-- 166 (231)
T ss_pred ECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCC--
Confidence 44555444455555666663 35553 58888899888 56664 789999999999999975 2222222
Q ss_pred cchhHHHHhhcCCCcceEeCCCcEe-eceEEcCCCEECCCcEEcC
Q 010922 419 QTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 462 (497)
+.||.++.| .+|.|++++.|++++++..
T Consensus 167 ----------------v~IG~gsvI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 167 ----------------VLIGANAVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred ----------------cEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 777777777 4778888888888777764
No 168
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.68 E-value=1.1e-07 Score=85.33 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=14.5
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcCC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 463 (497)
+.||+++.|. ++.|..+++||++++|...
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g 105 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAG 105 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCC
Confidence 4555555552 4555555555555555443
No 169
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.68 E-value=1e-07 Score=87.61 Aligned_cols=95 Identities=12% Similarity=0.204 Sum_probs=74.2
Q ss_pred ccCCCCCCCCCCccCCCeEEc-CeEee----ceEECCCCEEcceEEe------eeEEcCCcEECCCCEEcceEEeCCccc
Q 010922 350 FYDPKTPFYTSPRFLPPTKID-NCRIK----DAIISHGCFLRECTVE------HSIVGERSRLDYGVELKDTVMLGADYY 418 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~-~~~i~----~s~I~~~~~i~~~~v~------~svIg~~~~i~~~~~i~~s~i~~~~~~ 418 (497)
|++|++.+...++++..+.|- ++.++ .-.||.+|.|.+.+|- .++||+++.||++|.|+.|.+-++
T Consensus 19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~--- 95 (176)
T COG0663 19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN--- 95 (176)
T ss_pred EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC---
Confidence 778888888888888888873 46663 2567777777754443 468999999999999999877666
Q ss_pred cchhHHHHhhcCCCcceEeCCCcEeec-eEEcCCCEECCCcEEcCC
Q 010922 419 QTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~ 463 (497)
+.||=|+.|-| |.||++|.||+|+.+...
T Consensus 96 ----------------~lIGmgA~vldga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 96 ----------------VLIGMGATVLDGAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred ----------------cEEecCceEeCCcEECCCcEEccCCcccCC
Confidence 88999988865 999999999999888754
No 170
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.66 E-value=2.5e-07 Score=91.10 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=18.8
Q ss_pred ceEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccc
Q 010922 445 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 481 (497)
Q Consensus 445 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 481 (497)
+|+|++||.||.++.|.+...+++...+++|++|..+
T Consensus 173 ~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~ 209 (269)
T TIGR00965 173 PTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS 209 (269)
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence 3566666666666666544444433333344444443
No 171
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.63 E-value=3.8e-07 Score=90.45 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=17.1
Q ss_pred eEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEEccc
Q 010922 446 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 481 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g 481 (497)
++|++||.||.+++|.....+++...++++++|..+
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 555555555555555443333333333344444433
No 172
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.63 E-value=8.2e-08 Score=100.38 Aligned_cols=90 Identities=13% Similarity=0.216 Sum_probs=71.9
Q ss_pred cCCCCCCCCCCccCCCeEEcCeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhc
Q 010922 351 YDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLA 429 (497)
Q Consensus 351 ~~~~~~i~~~~~~~~~~~i~~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~ 429 (497)
+.+.+.+ ..+.+.+++.|.+ .+.+|+||++|.|+ +|.|++|+|+++|+|++++.|.+++++.+
T Consensus 285 i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~-------------- 348 (380)
T PRK05293 285 IAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN-------------- 348 (380)
T ss_pred ECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC--------------
Confidence 3444444 2334555555532 35679999999998 68999999999999999999999998877
Q ss_pred CCCcceEeCCCcEeec-----eEEcCCCEECCCcEEc
Q 010922 430 EGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIV 461 (497)
Q Consensus 430 ~~~~~~~Ig~~~~i~~-----~iI~~~~~Ig~~~~i~ 461 (497)
+.||+++.|.+ .+||++++|+++++|.
T Consensus 349 -----~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 -----AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -----CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999987 8899999999887763
No 173
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.61 E-value=7.2e-07 Score=83.17 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=5.0
Q ss_pred cEEEecCCH
Q 010922 323 DYWEDIGTI 331 (497)
Q Consensus 323 g~w~dIgt~ 331 (497)
.++.-++++
T Consensus 58 ~~iiai~~~ 66 (197)
T cd03360 58 EFVVAIGDN 66 (197)
T ss_pred EEEEecCCH
Confidence 345556666
No 174
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.61 E-value=6.7e-07 Score=92.14 Aligned_cols=109 Identities=8% Similarity=0.015 Sum_probs=75.5
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
.+.+||||||.++||. .+|.|+|+.|+ ||++|+++.+.. .+++|+|+++.... ..+ . +.
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~-~~~~ViVv~~~~~~-------~~~-~----~~-- 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAK-YCEQVFLSARPSQW-------QGT-P----LE-- 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHh-hCCEEEEEeCchHh-------hhc-c----cc--
Confidence 6789999999999995 59999999999 599999988876 48899888764211 101 0 00
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-cc-CHHHHHHHH
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSH 207 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~~-dl~~ll~~h 207 (497)
.+.++.... +..|...+|+.+..... .+.++++.||+-+ .. .+..+++.+
T Consensus 219 ~v~~I~D~~--------~~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 NLPTLPDRG--------ESVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCeEEeCCC--------CCCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 123333221 22699999999986553 3578999999844 43 345555543
No 175
>PLN02694 serine O-acetyltransferase
Probab=98.60 E-value=1.4e-07 Score=93.74 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=47.7
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHH-HHhhcCCCcceEeCCCcEe-eceEEcCCCEE
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEI-ASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 454 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~-~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~I 454 (497)
+.||+|++|... ..++||++|+||++|.|..++.+|+.. .+... .+.++++ |.||.|++| .++.||++|+|
T Consensus 167 A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g--~~~~~r~piIGd~---V~IGagA~Ilggi~IGd~a~I 239 (294)
T PLN02694 167 AKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTG--KACGDRHPKIGDG---VLIGAGATILGNVKIGEGAKI 239 (294)
T ss_pred ceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCcc--cccCCCccEECCC---eEECCeeEECCCCEECCCCEE
Confidence 344445544421 135666677777777666666665521 11111 3455555 777777777 57888888888
Q ss_pred CCCcEEcC
Q 010922 455 GKDVVIVN 462 (497)
Q Consensus 455 g~~~~i~~ 462 (497)
|+|+++..
T Consensus 240 GAgSVV~k 247 (294)
T PLN02694 240 GAGSVVLI 247 (294)
T ss_pred CCCCEECC
Confidence 88887774
No 176
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.59 E-value=1.4e-07 Score=89.83 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=41.8
Q ss_pred eEeCCCcEee-ceEEc-------CCCEECCCcEEcCCCCCCCCCCCCCCeEEccccEE-----EccCcEECCCc
Q 010922 435 IGVGRNTKIR-NCIID-------KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITI-----IMEKATIEDGM 495 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~-------~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~~v-----i~~~~~i~~g~ 495 (497)
+.||+|+.|+ .+.|- .-..||++..++-+.+|.+++.++.++.+..+.++ |++.++||..+
T Consensus 82 l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 82 LIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred EEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 6788888886 33332 23467777777777788888888888887666553 66776666554
No 177
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=6.7e-06 Score=78.09 Aligned_cols=232 Identities=14% Similarity=0.227 Sum_probs=145.7
Q ss_pred EEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeE
Q 010922 66 YAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 145 (497)
Q Consensus 66 ~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~V 145 (497)
..||.|=-..|||. -|||--|+|+ |||.++.++..++|.++++|.|.. +++.+++. .+| .
T Consensus 5 ~viIPAR~~STRLp------gKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~--------~~G---~ 64 (247)
T COG1212 5 VVIIPARLASTRLP------GKPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ--------AFG---G 64 (247)
T ss_pred EEEEecchhcccCC------CCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH--------HhC---C
Confidence 45566644445542 3999999999 599999999999999999999874 55666664 233 2
Q ss_pred EE-eeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeeeC
Q 010922 146 EV-LAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 222 (497)
Q Consensus 146 eI-l~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~~ 222 (497)
++ +..... ..||- -+..+...+. ..+.+-++=+-||. +....+.++++...++++++.-++.+..
T Consensus 65 ~avmT~~~h--------~SGTd-R~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~ 132 (247)
T COG1212 65 EAVMTSKDH--------QSGTD-RLAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKIT 132 (247)
T ss_pred EEEecCCCC--------CCccH-HHHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecC
Confidence 22 222211 14663 3334433332 12334555667997 3344677788877777888766676655
Q ss_pred CCC-C--CcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCC
Q 010922 223 ESR-A--SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 299 (497)
Q Consensus 223 ~~~-~--~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~ 299 (497)
++. . .+-..+..|.+|+-+-|..-|-.-.... . + ..+.+.-.|+|.|++++|.++..+....-
T Consensus 133 ~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~------~-------~~p~l~HIGIYayr~~~L~~f~~~~ps~L 198 (247)
T COG1212 133 DEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F------G-------GTPFLRHIGIYAYRAGFLERFVALKPSPL 198 (247)
T ss_pred CHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c------C-------CcchhheeehHHhHHHHHHHHHhcCCchh
Confidence 421 1 2334455788899999976654321100 0 0 02467789999999999998876643111
Q ss_pred Cch-hhhhHHhhhccCceEEEEeccEE-EecCCHHHHHHHHHHhhc
Q 010922 300 NDF-GSEIIPAAIMEHDVQAYIFRDYW-EDIGTIKSFYEANMALTK 343 (497)
Q Consensus 300 ~d~-~~~ii~~li~~~~v~~~~~~g~w-~dIgt~~~y~~An~~l~~ 343 (497)
+.. .-+-+..+=...+|.....+..- .-++|++||.++-..+..
T Consensus 199 E~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 199 EKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred HHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 110 01223333345788888887655 889999999999877653
No 178
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.57 E-value=4.9e-07 Score=85.22 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=11.2
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEE
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVI 460 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i 460 (497)
+.||.++.+. ++.|++++.|++++++
T Consensus 160 ~~ig~~~~v~~~~~i~~~~~i~~~~~v 186 (201)
T TIGR03570 160 VFIGAGATIIQGVTIGAGAIVGAGAVV 186 (201)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEE
Confidence 3444444442 3444444444444444
No 179
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.55 E-value=7.1e-08 Score=95.64 Aligned_cols=80 Identities=25% Similarity=0.428 Sum_probs=47.4
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEe-eceEEcCCCEEC
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIG 455 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~Ig 455 (497)
+.||+|++|+.. ...+||++|+||++|.|...+.+|+...... .....+++| |.||.|++| .++.||+||+||
T Consensus 148 a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~~~~-~~~p~IGd~---V~IGaga~Ilggv~IG~~a~IG 221 (273)
T PRK11132 148 AKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGKTSG-DRHPKIREG---VMIGAGAKILGNIEVGRGAKIG 221 (273)
T ss_pred ceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcccCC-CcCCEECCC---cEEcCCCEEcCCCEECCCCEEC
Confidence 455555555521 1247777777777777766666654211000 012445555 777777777 377888888888
Q ss_pred CCcEEcC
Q 010922 456 KDVVIVN 462 (497)
Q Consensus 456 ~~~~i~~ 462 (497)
+|+++..
T Consensus 222 AgSvV~~ 228 (273)
T PRK11132 222 AGSVVLQ 228 (273)
T ss_pred CCCEECc
Confidence 8877764
No 180
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.54 E-value=1.9e-07 Score=99.32 Aligned_cols=55 Identities=13% Similarity=0.308 Sum_probs=51.0
Q ss_pred eEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcC
Q 010922 388 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 388 ~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 462 (497)
+.+.+|+||++|.| .+|.|++|+++.+ |.||++++|++|+|+++|.||+++.|.+
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 45779999999999 7999999999887 9999999999999999999999999975
No 181
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.54 E-value=2.6e-07 Score=96.29 Aligned_cols=54 Identities=26% Similarity=0.527 Sum_probs=42.7
Q ss_pred eEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcC
Q 010922 388 CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 388 ~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 462 (497)
+.|++|+||++|+|+ +.|.+|+++.+ +.||+||.|.+|+|++++.|++++.+.+
T Consensus 285 ~~i~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~~~~~i~~ 338 (369)
T TIGR02092 285 SKVENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIGEGAHLEN 338 (369)
T ss_pred CEEEEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEECCCCEEEE
Confidence 334578888888886 45888888777 7888888888888888888888888765
No 182
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=2.2e-07 Score=95.14 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=53.8
Q ss_pred CCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCc
Q 010922 380 SHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 458 (497)
Q Consensus 380 ~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~ 458 (497)
.+.+.+. +..|.+|.|+.||.|. | +|.+|+++.+ +.|+++|.|++|+|..++.||+||
T Consensus 283 ~pPak~~~~s~v~nSLv~~GciI~-G-~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~ 341 (393)
T COG0448 283 LPPAKFVNDSEVSNSLVAGGCIIS-G-TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGA 341 (393)
T ss_pred CCCceEecCceEeeeeeeCCeEEE-e-EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCC
Confidence 3444444 3456899999999997 5 9999999988 999999999999999999999999
Q ss_pred EEcC
Q 010922 459 VIVN 462 (497)
Q Consensus 459 ~i~~ 462 (497)
+|.+
T Consensus 342 ~l~~ 345 (393)
T COG0448 342 VLRR 345 (393)
T ss_pred EEEE
Confidence 9987
No 183
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.53 E-value=2.8e-07 Score=95.67 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=44.8
Q ss_pred CCCCEEcc-eEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCc
Q 010922 380 SHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 458 (497)
Q Consensus 380 ~~~~~i~~-~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~ 458 (497)
.+.++|++ +.+++|+||++|+|+.+ .|.+++++.+ +.||++|.|.+|+|++++.||.++
T Consensus 281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~ 340 (361)
T TIGR02091 281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGA 340 (361)
T ss_pred CCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCC
Confidence 34444442 35566788888888765 7777777665 788888888888888888888887
Q ss_pred EEcC
Q 010922 459 VIVN 462 (497)
Q Consensus 459 ~i~~ 462 (497)
.|.+
T Consensus 341 ~l~~ 344 (361)
T TIGR02091 341 VIRN 344 (361)
T ss_pred EEee
Confidence 7753
No 184
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.52 E-value=7.9e-07 Score=75.42 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=47.9
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECC
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 456 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 456 (497)
+.|+++|.|. ..++||++|.|++++.|.+.+.++++ +.||. .|.+|+|.+++.|+.
T Consensus 18 ~~I~~~~~i~----g~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i~~ 73 (101)
T cd05635 18 AVIEPFAVIE----GPVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNKQH 73 (101)
T ss_pred CEECCCCEEe----CCCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEecC
Confidence 3444444443 23677777777777777654444443 55543 455677766666666
Q ss_pred CcEEcCCCCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 457 DVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 457 ~~~i~~~~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
++.|.+ ++|+++++|++++++
T Consensus 74 ~~~lg~--------------------siIg~~v~ig~~~~~ 94 (101)
T cd05635 74 DGFLGH--------------------SYLGSWCNLGAGTNN 94 (101)
T ss_pred cCEEee--------------------eEECCCCEECCCcee
Confidence 666543 678999999988763
No 185
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.52 E-value=5.3e-07 Score=85.37 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=72.8
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCC
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 142 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~ 142 (497)
..|.+||||+|.++|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. |.. ++
T Consensus 3 ~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~--------~~~----~g- 61 (192)
T COG0746 3 TPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR--------YAE----FG- 61 (192)
T ss_pred CCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh--------hhc----cC-
Confidence 4789999999999998 67999999999 599999999998754 555554443221 111 22
Q ss_pred CeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-ccCH
Q 010922 143 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDY 200 (497)
Q Consensus 143 ~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~~dl 200 (497)
++++..... ++ |...+++.++..+. .+.+++++||+=+ ..++
T Consensus 62 --~~vv~D~~~-------~~-GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~l 104 (192)
T COG0746 62 --LPVVPDELP-------GF-GPLAGILAALRHFG------TEWVLVLPCDMPFIPPEL 104 (192)
T ss_pred --CceeecCCC-------CC-CCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHH
Confidence 345543321 22 89999999987764 5899999999844 4444
No 186
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.50 E-value=4.4e-07 Score=88.15 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=16.6
Q ss_pred cceEeCCCcEee-------ceEEcCCCEECCCcEEcCCCC
Q 010922 433 VPIGVGRNTKIR-------NCIIDKNVKIGKDVVIVNKDD 465 (497)
Q Consensus 433 ~~~~Ig~~~~i~-------~~iI~~~~~Ig~~~~i~~~~~ 465 (497)
-|+.||+||.|. ++++|++|.|++|+.|..++.
T Consensus 181 ~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tk 220 (271)
T COG2171 181 NPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTK 220 (271)
T ss_pred CCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcc
Confidence 345555555543 345555555555555554433
No 187
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.50 E-value=3.5e-07 Score=96.68 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=39.4
Q ss_pred CCccCCCeEEcCeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCC
Q 010922 360 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGA 415 (497)
Q Consensus 360 ~~~~~~~~~i~~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~ 415 (497)
.+.+++++.|+++.|.+|+||++|.|+ +|.|++|+|+++|+|+++|+|.+++++.+
T Consensus 315 ~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~ 371 (407)
T PRK00844 315 DSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN 371 (407)
T ss_pred eCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Confidence 345566666666666677777777777 57777777777777777777777766555
No 188
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.49 E-value=1.2e-06 Score=78.47 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=34.7
Q ss_pred eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCC
Q 010922 392 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 467 (497)
Q Consensus 392 ~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~ 467 (497)
+++||++|.|++++.|. +.+-|.. ---..++++ +.||.|+.| +..||+|+.||+++++.....+.
T Consensus 47 ~a~Ighd~~IG~~~~I~-~~l~G~~------~~pV~IG~~---~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i~ 111 (147)
T cd04649 47 GVIVGKGSDVGGGASIM-GTLSGGG------NNVISIGKR---CLLGANSGI-GISLGDNCIVEAGLYVTAGTKVT 111 (147)
T ss_pred CEEECCCCEECCCCEEE-EECCCCc------ccCEEECCC---CEECCCCEE-eEEECCCCEECCCCEEeCCeEEE
Confidence 36777777777777776 2221110 000112222 556666666 56677777777776666554443
No 189
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.2e-07 Score=89.79 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=54.4
Q ss_pred ccCCCCCCCCCCccCCCeEEc-------CeEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeC
Q 010922 350 FYDPKTPFYTSPRFLPPTKID-------NCRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLG 414 (497)
Q Consensus 350 ~~~~~~~i~~~~~~~~~~~i~-------~~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~ 414 (497)
+++|++.+++++.++|++.|. ++++++|||-++|.|. +++|.||+||++|.||.++.++..-+..
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~ 362 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEP 362 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccccc
Confidence 578888888888888888774 4677889999999999 5899999999999999999998765443
No 190
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.48 E-value=1.1e-06 Score=87.50 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=8.8
Q ss_pred eeEEcCCcEECCCCEE
Q 010922 392 HSIVGERSRLDYGVEL 407 (497)
Q Consensus 392 ~svIg~~~~i~~~~~i 407 (497)
.++||++|.||.+|.|
T Consensus 224 GavIGhds~IG~gasI 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CCEECCCCEECCCCEE
Confidence 3455555555555555
No 191
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.48 E-value=1.1e-05 Score=86.32 Aligned_cols=220 Identities=16% Similarity=0.184 Sum_probs=129.8
Q ss_pred ccccCCCceEEEEecCCCCCcccCCCCCCCCcccccc---CcccchhHhHHHHHhc--------------CCcEEEEEcc
Q 010922 57 DEKVKPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVA---GCYRLIDIPMSNCINS--------------GINKIFVLTQ 119 (497)
Q Consensus 57 ~~~~~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~---g~p~LId~~L~~l~~~--------------GI~~I~Iv~~ 119 (497)
...++...+.+||||||.||||. ...||+|+||+ |+ +|+++.++++... .+ .++|+|.
T Consensus 99 l~~i~~gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~I-p~~IMTS 173 (482)
T PTZ00339 99 LEIIKKGEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTI-YILVLTS 173 (482)
T ss_pred HHHHhcCCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCC-CEEEEeC
Confidence 34456677999999999999985 68999999994 88 6999999999864 24 4455544
Q ss_pred -cChhHHHHHHHhc-ccCCCcc----cCCCeEEEee-CccCC-CCC--CCc-cccChHHHHHHHHH--HhhhhccCCCCc
Q 010922 120 -FNSASLNRHIART-YFGNGTN----FGDGFVEVLA-ATQTP-GES--GKN-WFQGTADAVRQFTW--VFEDAKNRNIEN 186 (497)
Q Consensus 120 -~~~~~l~~~l~~~-y~~~g~~----~~~~~VeIl~-~~~~~-~e~--~~~-~~~GTa~aL~~~~~--~i~~~~~~~~e~ 186 (497)
+.++.+.+++.+. ||+-... |..+.+-.+. .+..+ .++ ... -+.|.++..+.... .+++....+.+.
T Consensus 174 ~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~y 253 (482)
T PTZ00339 174 SFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKY 253 (482)
T ss_pred cchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEE
Confidence 6678888888642 3432210 0000000000 00000 000 011 13577777665432 355555677899
Q ss_pred EEEEcCCeee-ccCHHHHHHHHHHcCC-CeEEEEeeeCCCCCCcceEEEE-CCCCCEEEEeecCCccccccccccccccC
Q 010922 187 VAILCGDHLY-RMDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVKI-DNMGRIAQFAEKPSGANLKAMQVDTSLLG 263 (497)
Q Consensus 187 ~LVl~gD~l~-~~dl~~ll~~h~~~~a-~~tl~~~~~~~~~~~~~g~v~~-d~~g~V~~~~EKp~~~~~~~~~~~~~~~~ 263 (497)
+.+.+.|.+. ..-=-.++-.+.+.++ ++.-.+.+... ...-|++.. |..-.|+++.|-+....... .-++ +
T Consensus 254 i~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~-~~~~---g 327 (482)
T PTZ00339 254 VQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNND-ELLT---G 327 (482)
T ss_pred EEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhcc-cccC---C
Confidence 9999999974 3433456777787777 66554443332 133566543 33336888887654322100 0000 0
Q ss_pred CCccccccCCccceeeEEEEcHHHHHHHHh
Q 010922 264 FSPQEARKCPYVASMGVYVFKKDVLFKLLR 293 (497)
Q Consensus 264 ~~~~~~~~~~~l~~~Giyif~~~vL~~ll~ 293 (497)
.......++..++|+.++|.++.+
T Consensus 328 ------~l~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 328 ------ELAFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred ------eecccccceEEEEEEHHHHHHHhh
Confidence 001245688999999999987653
No 192
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.47 E-value=7.7e-05 Score=79.28 Aligned_cols=346 Identities=12% Similarity=0.147 Sum_probs=190.9
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCcccccc-CcccchhHhHHHHHh----cCCc-EEEEEcccC-hhHHHHHHHhcc--
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVA-GCYRLIDIPMSNCIN----SGIN-KIFVLTQFN-SASLNRHIARTY-- 133 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~-g~p~LId~~L~~l~~----~GI~-~I~Iv~~~~-~~~l~~~l~~~y-- 133 (497)
..+.+|.||+|.||||. ...||.++|+. |+ +++|..++++.. .|.+ ..+|.+.+. ++...+++.+ |
T Consensus 78 ~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~~ 152 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YTN 152 (469)
T ss_pred hcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cCC
Confidence 56789999999999976 57899999995 55 699999988765 3544 346777765 5667888854 4
Q ss_pred cCCCcc-cCCC-eEEEeeCccCCCC-----CCCcc-ccChHHHHHHHHH--HhhhhccCCCCcEEEEcCCeeecc-CHHH
Q 010922 134 FGNGTN-FGDG-FVEVLAATQTPGE-----SGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRM-DYMD 202 (497)
Q Consensus 134 ~~~g~~-~~~~-~VeIl~~~~~~~e-----~~~~~-~~GTa~aL~~~~~--~i~~~~~~~~e~~LVl~gD~l~~~-dl~~ 202 (497)
+..... |... .-.+......+-+ ....| +-|.++....... .+++....+.+.+.|.+.|.+... |. .
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp-~ 231 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDL-K 231 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCH-H
Confidence 211110 1100 0011111111101 11124 3566665544322 233333457899999999998654 44 6
Q ss_pred HHHHHHHcCCCeEEEEeeeCCCCCCcceEEE-ECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEE
Q 010922 203 FIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 281 (497)
Q Consensus 203 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy 281 (497)
++..|.++++++++=+.+...+. .+-|.+. .|..-+++++.+-|+........ .......+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~-------------~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISYEGKVQLLEIAQVPDEHVNEFKS-------------IEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCC-CCccEEEEECCEEEEEEEecCCHHHHHhhcc-------------cccceeeeeeeE
Confidence 78889999999888766543311 2345443 34334577888776643210000 012467899999
Q ss_pred EEcHHHHHHHHhhhC-C-------CCCc---------hhhhhHHhhhccCceEEEEec-cEEEecCCHHHHHHHHHHhhc
Q 010922 282 VFKKDVLFKLLRWRY-P-------TSND---------FGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTK 343 (497)
Q Consensus 282 if~~~vL~~ll~~~~-~-------~~~d---------~~~~ii~~li~~~~v~~~~~~-g~w~dIgt~~~y~~An~~l~~ 343 (497)
.|+-+.|.++++... + ...+ +..+.++.+ .+..++.+. ..+..+-+..|++-+..++..
T Consensus 298 w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f---~~~~~v~VpR~rF~PVK~~~dll~~rsdly~ 374 (469)
T PLN02474 298 WVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFF---DNAIGINVPRSRFLPVKATSDLLLVQSDLYT 374 (469)
T ss_pred EEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhC---CCceEEEEchhhccCCCCCCCHHHHHHHHHH
Confidence 999999988765321 0 0000 111122111 234444432 236677777777777666554
Q ss_pred CCCCccccCCCCCCCCCCccCCCeEEcC--eEeec--eEE-CCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccc
Q 010922 344 ESPAFHFYDPKTPFYTSPRFLPPTKIDN--CRIKD--AII-SHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYY 418 (497)
Q Consensus 344 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~--~~i~~--s~I-~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~ 418 (497)
.........+.....+. |..+++. .++.+ ..+ +--..+ +| .+=.|--++..|.++++++++++.+
T Consensus 375 l~~~~l~~~~~~~~~~~----p~IeL~~~f~~v~~f~~rf~~iPsl~-~~--d~LtV~Gdv~fG~~v~l~G~v~i~~--- 444 (469)
T PLN02474 375 LVDGFVIRNKARTNPSN----PSIELGPEFKKVANFLSRFKSIPSIV-EL--DSLKVSGDVWFGSGIVLKGKVTITA--- 444 (469)
T ss_pred hccCeEEecCcccCCCC----CcEEECcccccHHhHHHhcCCCCCcc-cC--CeEEEeeeeEECCCcEEEEEEEEEc---
Confidence 33211111111111111 1122221 11100 111 111112 12 3456777889999999999998866
Q ss_pred cchhHHHHhhcCCCcceEeCCCcEeeceEEcCCC
Q 010922 419 QTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 452 (497)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~ 452 (497)
++..+..|.+|+.++|++|-.+.
T Consensus 445 -----------~~~~~~~ip~g~~l~~~~~~~~~ 467 (469)
T PLN02474 445 -----------KSGVKLEIPDGAVLENKDINGPE 467 (469)
T ss_pred -----------CCCCeeecCCCcEecceeecccC
Confidence 23356889999999988876653
No 193
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.47 E-value=2.2e-06 Score=78.93 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=48.7
Q ss_pred eEECCCCEEc-ceEEe-------------eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcE
Q 010922 377 AIISHGCFLR-ECTVE-------------HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 442 (497)
Q Consensus 377 s~I~~~~~i~-~~~v~-------------~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 442 (497)
+.||++|.|+ ++.|. .++||+++.|++++.|.++.+..+ +.||+++.
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~-------------------v~Ig~~~~ 103 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSY-------------------VHIGKNCV 103 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCC-------------------cEECCCCE
Confidence 4566666665 34443 357999999999999988877665 78888887
Q ss_pred e-eceEEcCCCEECCCcEEcCC
Q 010922 443 I-RNCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 443 i-~~~iI~~~~~Ig~~~~i~~~ 463 (497)
| .+|+|++++.|++++++...
T Consensus 104 Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 104 IGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred EcCCCEECCCcEECCCCEECCC
Confidence 7 46777777777777776643
No 194
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.46 E-value=2.4e-06 Score=84.79 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=7.6
Q ss_pred eEEcCCCEECCCcEEc
Q 010922 446 CIIDKNVKIGKDVVIV 461 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i~ 461 (497)
++||+||.||+|++|.
T Consensus 194 p~IGd~V~IGaga~Il 209 (273)
T PRK11132 194 PKIREGVMIGAGAKIL 209 (273)
T ss_pred CEECCCcEEcCCCEEc
Confidence 4444444444444444
No 195
>PRK10502 putative acyl transferase; Provisional
Probab=98.45 E-value=9.9e-07 Score=82.93 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=39.4
Q ss_pred eEECCCCEEcc-eEE---eeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-ceEEcCC
Q 010922 377 AIISHGCFLRE-CTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 451 (497)
Q Consensus 377 s~I~~~~~i~~-~~v---~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~ 451 (497)
..||++|.|++ +.+ ..++||++|.|++++.|.... .++... -..+.. -|+.||+++.|. +|+|..+
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~---h~~~~~---~~~~~~---~~i~Igd~~~Ig~~a~I~~G 142 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGS---HDYSDP---HFDLNT---APIVIGEGCWLAADVFVAPG 142 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEECCC---CCCcCC---Cccccc---CCEEEcCCcEEcCCCEEcCC
Confidence 45555555552 333 357888888888888875331 110000 000000 125666666663 5555555
Q ss_pred CEECCCcEEcC
Q 010922 452 VKIGKDVVIVN 462 (497)
Q Consensus 452 ~~Ig~~~~i~~ 462 (497)
++||++++|..
T Consensus 143 v~Ig~~~vIga 153 (182)
T PRK10502 143 VTIGSGAVVGA 153 (182)
T ss_pred CEECCCCEECC
Confidence 55555555543
No 196
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.45 E-value=1e-06 Score=69.89 Aligned_cols=33 Identities=12% Similarity=0.351 Sum_probs=20.4
Q ss_pred ECCCCEEcc-eEEe-eeEEcCCcEECCCCEEcceE
Q 010922 379 ISHGCFLRE-CTVE-HSIVGERSRLDYGVELKDTV 411 (497)
Q Consensus 379 I~~~~~i~~-~~v~-~svIg~~~~i~~~~~i~~s~ 411 (497)
|+++|.|+. +.+. +++||++|.|++++.|.++.
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ 37 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAAT 37 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEecc
Confidence 444444442 3333 47888888888888877664
No 197
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.44 E-value=1.6e-06 Score=82.19 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=30.3
Q ss_pred cCCCeEEc-CeEee-----ceEECCCCEEc-ceEEe---eeEEcCCcEECCCCEEcce
Q 010922 363 FLPPTKID-NCRIK-----DAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDT 410 (497)
Q Consensus 363 ~~~~~~i~-~~~i~-----~s~I~~~~~i~-~~~v~---~svIg~~~~i~~~~~i~~s 410 (497)
++.++++. +|++. ...||++|.|+ ++.+. .++||++|.|+++|.|.+.
T Consensus 46 iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 46 FGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred ECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 44555553 35541 25677777776 34443 5788888888888888753
No 198
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.44 E-value=1.1e-06 Score=69.68 Aligned_cols=68 Identities=29% Similarity=0.533 Sum_probs=43.7
Q ss_pred eEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeec---------eEEcCCCEECCCcEEcCC
Q 010922 393 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 393 svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~---------~iI~~~~~Ig~~~~i~~~ 463 (497)
|+||+++.|++++.|.+.+.++.+ +.|++++.|.+ ++|++++.|+.++.+..
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~- 61 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG- 61 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeC-
Confidence 467777777777777764555554 77777777764 45666666666655542
Q ss_pred CCCCCCCCCCCCeEEccccEEEccCcEECCCccC
Q 010922 464 DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 464 ~~v~~~~~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
+ +.|++++.|+++++|
T Consensus 62 -----------------~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 62 -----------------G-VKIGDNAVIGAGAVV 77 (78)
T ss_pred -----------------C-CEECCCCEECcCcEe
Confidence 2 345777777777654
No 199
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.44 E-value=9.7e-07 Score=81.40 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=18.8
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 462 (497)
|.||.++.|. +++||+++.||+++++..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 6666666664 567777777777776664
No 200
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.43 E-value=5.7e-07 Score=95.74 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=74.2
Q ss_pred EECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcC-------
Q 010922 378 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK------- 450 (497)
Q Consensus 378 ~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~------- 450 (497)
.+.+.+.+.++.+++|.||++|+| +++.|++|+++++ +.||+|+.|.+|+|..
T Consensus 294 ~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~ 353 (429)
T PRK02862 294 RYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESS 353 (429)
T ss_pred CCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCcccccc
Confidence 344455555677788999999999 8999999988887 9999999999999965
Q ss_pred ------------CCEECCCcEEcCCCCCCCCCCCCCCeEEcccc-----------EEEccC-cEECCCccC
Q 010922 451 ------------NVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----------TIIMEK-ATIEDGMVI 497 (497)
Q Consensus 451 ------------~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~g~-----------~vi~~~-~~i~~g~~i 497 (497)
++.||+++.|.++ -+++..++++++.+..+. .+|+.+ ++|+.|+++
T Consensus 354 ~~~~~~~~~~~~~~~Ig~~~~i~~~-ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 354 EEREELRKEGKPPLGIGEGTTIKRA-IIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred cccccccccCCcccEECCCCEEEEE-EECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 7999999999764 355666677777664332 234555 556666553
No 201
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.43 E-value=6.3e-07 Score=95.61 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=63.0
Q ss_pred CCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcC----------
Q 010922 381 HGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK---------- 450 (497)
Q Consensus 381 ~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~---------- 450 (497)
+++.+.++.+.+|+|+++|+|+ +|.|++|+++.+ +.||++|+|.+|+|..
T Consensus 304 ~~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~~~-------------------~~Ig~~~~I~~sii~g~~~~~~~~~~ 363 (436)
T PLN02241 304 PPSKIEDCRITDSIISHGCFLR-ECKIEHSVVGLR-------------------SRIGEGVEIEDTVMMGADYYETEEEI 363 (436)
T ss_pred CCcEecCCeEEEeEEcCCcEEc-CeEEEeeEEcCC-------------------CEECCCCEEEEeEEECCCcccccccc
Confidence 3444445556668888888888 888888877766 7888888888877743
Q ss_pred ------C---CEECCCcEEcCCCCCCCCCCCCCCeEEc-----cccEEEccCcEECCCc
Q 010922 451 ------N---VKIGKDVVIVNKDDVQEADRPELGFYIR-----SGITIIMEKATIEDGM 495 (497)
Q Consensus 451 ------~---~~Ig~~~~i~~~~~v~~~~~~~~~~~i~-----~g~~vi~~~~~i~~g~ 495 (497)
+ ++||+++.+.++. +++...+++++.|. .+.+++|++++|++|+
T Consensus 364 ~~~~~~~~~~~~Ig~~~~i~~~v-I~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~ 421 (436)
T PLN02241 364 ASLLAEGKVPIGIGENTKIRNAI-IDKNARIGKNVVIINKDGVQEADREEEGYYIRSGI 421 (436)
T ss_pred ccccccCCcceEECCCCEEcceE-ecCCCEECCCcEEecccccCCccccccccEEeCCE
Confidence 2 3788887777543 66666666666664 2233456666666664
No 202
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.40 E-value=1e-06 Score=81.27 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=19.9
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCC
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 415 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~ 415 (497)
+.||++++|+.. ..++|+++|.||++|.|...+.++.
T Consensus 68 ~~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 68 ARIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred CEECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECC
Confidence 445555555421 1356666666666666665555554
No 203
>PLN02357 serine acetyltransferase
Probab=98.40 E-value=9.2e-07 Score=90.32 Aligned_cols=67 Identities=25% Similarity=0.414 Sum_probs=40.7
Q ss_pred eEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEe-eceEEcCCCEECCCcEEcCC
Q 010922 393 SIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 393 svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 463 (497)
++||++++||++|.|..++.+|+...+.. .....|++| |.||.|++| .++.||++++||+++++..+
T Consensus 247 iVIGe~avIGdnV~I~~gVtIGg~g~~~g-~~~piIGd~---V~IGagA~IlggV~IGdga~IGAgSVV~~d 314 (360)
T PLN02357 247 VVIGETAVVGNNVSILHNVTLGGTGKQSG-DRHPKIGDG---VLIGAGTCILGNITIGEGAKIGAGSVVLKD 314 (360)
T ss_pred eEECCCCEECCCCEEeCCceecCccccCC-ccCceeCCC---eEECCceEEECCeEECCCCEECCCCEECcc
Confidence 44555555555555544444443211111 113455566 888888888 58889999999999888753
No 204
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.40 E-value=2e-06 Score=85.69 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=7.1
Q ss_pred eEEcCCCEECCCcEE
Q 010922 446 CIIDKNVKIGKDVVI 460 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i 460 (497)
+.||++|.||.|+.|
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 444444444444444
No 205
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.36 E-value=2.3e-06 Score=81.71 Aligned_cols=98 Identities=23% Similarity=0.341 Sum_probs=52.3
Q ss_pred CCCCccCCCeEEcCeEeeceEECCCCEEc-ceEE---eeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCC--
Q 010922 358 YTSPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG-- 431 (497)
Q Consensus 358 ~~~~~~~~~~~i~~~~i~~s~I~~~~~i~-~~~v---~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~-- 431 (497)
..++.+.||.++... .+..||++|+|+ +|.+ .+..||++|.|+++|.|... +..+ +...+ ..|
T Consensus 59 g~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~---~h~~---~~~~r---~~g~~ 127 (203)
T PRK09527 59 GENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT---GHPV---HHELR---KNGEM 127 (203)
T ss_pred CCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC---CCCC---Chhhc---ccccc
Confidence 344556667666310 145566666665 3444 24689999999999988632 1100 00000 001
Q ss_pred -CcceEeCCCcEee-ceEEcCCCEECCCcEEcCCCCC
Q 010922 432 -KVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDV 466 (497)
Q Consensus 432 -~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v 466 (497)
.-|+.||+++.|. +|+|..+++||++++|+....|
T Consensus 128 ~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV 164 (203)
T PRK09527 128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVV 164 (203)
T ss_pred ccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEE
Confidence 0136677777763 6666666666666666544333
No 206
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.35 E-value=2.1e-06 Score=72.94 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=21.1
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcce
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDT 410 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s 410 (497)
+.|+++|.|.+. ..+.||++|.|+++|.|.++
T Consensus 8 ~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 8 VYIGPGCVISAG--GGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred cEECCCCEEecC--CceEECCCCEECCCCEEECC
Confidence 444555544421 25788888888888888766
No 207
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.35 E-value=1.6e-06 Score=80.62 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=31.2
Q ss_pred HHhhcCCCcceEeCCCcEe-eceEEcCCCEECCCcEEcCC
Q 010922 425 ASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 425 ~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 463 (497)
...+++| |.||.|++| .+--||+|++||+|+++..+
T Consensus 119 hPtIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlkd 155 (194)
T COG1045 119 HPTIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLKD 155 (194)
T ss_pred CCccCCC---eEECCCCEEEcceEECCCCEECCCceEccC
Confidence 5667777 999999998 68999999999999988765
No 208
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.34 E-value=2.3e-06 Score=74.12 Aligned_cols=65 Identities=18% Similarity=0.358 Sum_probs=35.4
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEc-------
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID------- 449 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~------- 449 (497)
+.|++++.|+ .+++||++|.|++++.|.+...++.+ +.|++++.+.++++.
T Consensus 5 ~~I~~~~~i~----~~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ 62 (119)
T cd03358 5 CIIGTNVFIE----NDVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYRK 62 (119)
T ss_pred CEECCCcEEC----CCcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCccccccc
Confidence 4444555444 24677777777777777543333333 666666666554433
Q ss_pred ---CCCEECCCcEEcCC
Q 010922 450 ---KNVKIGKDVVIVNK 463 (497)
Q Consensus 450 ---~~~~Ig~~~~i~~~ 463 (497)
.++.||+++.|.+.
T Consensus 63 ~~~~~~~Ig~~~~Ig~~ 79 (119)
T cd03358 63 WELKGTTVKRGASIGAN 79 (119)
T ss_pred cccCCcEECCCcEECcC
Confidence 23445555555543
No 209
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.33 E-value=3.9e-06 Score=83.27 Aligned_cols=16 Identities=6% Similarity=0.140 Sum_probs=7.4
Q ss_pred eEEcCCcEECCCCEEc
Q 010922 393 SIVGERSRLDYGVELK 408 (497)
Q Consensus 393 svIg~~~~i~~~~~i~ 408 (497)
+.|+.+|+||+++.|.
T Consensus 194 g~I~HdvvIGd~~~Ig 209 (319)
T TIGR03535 194 GRISAGVVVGDGSDIG 209 (319)
T ss_pred EEEccCCEECCCCEEC
Confidence 4444444444444444
No 210
>PLN02694 serine O-acetyltransferase
Probab=98.31 E-value=3.4e-06 Score=83.97 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=8.3
Q ss_pred eeccCHHHHHHHHHH
Q 010922 195 LYRMDYMDFIQSHVD 209 (497)
Q Consensus 195 l~~~dl~~ll~~h~~ 209 (497)
+...+|.+.+.++..
T Consensus 55 l~~~~~~~al~~~l~ 69 (294)
T PLN02694 55 LSHSSLERSLSFHLG 69 (294)
T ss_pred cCCcCHHHHHHHHHH
Confidence 334456666666544
No 211
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.30 E-value=8.1e-06 Score=75.72 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=21.7
Q ss_pred eEECCCCEEc-ceEE---eeeEEcCCcEECCCCEEcc
Q 010922 377 AIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKD 409 (497)
Q Consensus 377 s~I~~~~~i~-~~~v---~~svIg~~~~i~~~~~i~~ 409 (497)
..||++|+|+ ++.+ ...+||++|.|+++|.|..
T Consensus 63 i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~ 99 (169)
T cd03357 63 IHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYT 99 (169)
T ss_pred CEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEe
Confidence 4455555555 2333 2468999999999998854
No 212
>PLN02357 serine acetyltransferase
Probab=98.29 E-value=3.9e-06 Score=85.80 Aligned_cols=53 Identities=11% Similarity=0.334 Sum_probs=34.7
Q ss_pred eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCcEEcC
Q 010922 392 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 392 ~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 462 (497)
+++||++|.||.||.|.+.+.+|++ +.||.|+.|...+-...+.+|.-+.+.+
T Consensus 278 ~piIGd~V~IGagA~IlggV~IGdg------------------a~IGAgSVV~~dVP~~~~v~G~PArvv~ 330 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILGNITIGEG------------------AKIGAGSVVLKDVPPRTTAVGNPARLIG 330 (360)
T ss_pred CceeCCCeEECCceEEECCeEECCC------------------CEECCCCEECcccCCCcEEECCCeEEEc
Confidence 5778888888888777666655554 7777777776655555555555554443
No 213
>PLN02739 serine acetyltransferase
Probab=98.28 E-value=3.5e-06 Score=85.50 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=22.5
Q ss_pred eEeCCCcEe-eceEEcCCCEECCCcEEcC
Q 010922 435 IGVGRNTKI-RNCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 435 ~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~ 462 (497)
|.||.|++| .++.||+|+.||+|+++..
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 788888887 4788888888888888764
No 214
>PRK10191 putative acyl transferase; Provisional
Probab=98.28 E-value=6.6e-06 Score=74.46 Aligned_cols=29 Identities=28% Similarity=0.522 Sum_probs=20.4
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcCC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 463 (497)
+.||.++.|. ++.||+++.||+++++..+
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 6677777764 5777777777777777653
No 215
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.27 E-value=3.3e-06 Score=87.46 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=46.4
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-----ceEEcCC
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-----NCIIDKN 451 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~iI~~~ 451 (497)
+.|+++|.|. +|+|+..|.||++|.|++++++++ +.||++|.|. +|+|+++
T Consensus 255 ~~i~~~~~i~-----~~~i~~~~~Ig~~~~I~~~~i~~~-------------------~~Ig~~~~i~~~~i~~s~i~~~ 310 (353)
T TIGR01208 255 VVVGEGAKIV-----NSVIRGPAVIGEDCIIENSYIGPY-------------------TSIGEGVVIRDAEVEHSIVLDE 310 (353)
T ss_pred EEECCCCEEe-----CCEEECCcEECCCCEEcCcEECCC-------------------CEECCCCEEeeeEEEeeEEcCC
Confidence 4455555553 456666667777777766666655 5555555554 4555555
Q ss_pred CEECCCc-EEcCCCCCCCCCCCCCCeEEcc-ccEEEccCcEEC
Q 010922 452 VKIGKDV-VIVNKDDVQEADRPELGFYIRS-GITIIMEKATIE 492 (497)
Q Consensus 452 ~~Ig~~~-~i~~~~~v~~~~~~~~~~~i~~-g~~vi~~~~~i~ 492 (497)
++|+.+. .+.+ .-+++...+++++.+.+ ...++|++++|+
T Consensus 311 ~~i~~~~~~~~~-~ii~~~~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 311 SVIEGVQARIVD-SVIGKKVRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred CEEcCCcceeec-CEEcCCCEECCCcccccccceEEcCCceec
Confidence 5554442 3322 22334444444444432 123455555553
No 216
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.27 E-value=7.7e-06 Score=78.07 Aligned_cols=16 Identities=50% Similarity=0.555 Sum_probs=8.2
Q ss_pred eEEcCCCEECCCcEEc
Q 010922 446 CIIDKNVKIGKDVVIV 461 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i~ 461 (497)
++||++|.||.+++|.
T Consensus 132 i~IGd~v~IG~~~~I~ 147 (203)
T PRK09527 132 ITIGNNVWIGSHVVIN 147 (203)
T ss_pred eEECCCcEECCCCEEc
Confidence 4455555555555544
No 217
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.27 E-value=6.5e-06 Score=73.81 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=7.5
Q ss_pred eEEcCCCEECCCcEE
Q 010922 446 CIIDKNVKIGKDVVI 460 (497)
Q Consensus 446 ~iI~~~~~Ig~~~~i 460 (497)
+.||++|.||.++.|
T Consensus 74 V~IG~~~~IG~ga~I 88 (147)
T cd04649 74 ISIGKRCLLGANSGI 88 (147)
T ss_pred EEECCCCEECCCCEE
Confidence 445555555555444
No 218
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.26 E-value=4.5e-06 Score=70.50 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=11.6
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEc
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 461 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 461 (497)
+.|+.++.+. .+.|++++.|++++.|.
T Consensus 61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 61 VVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred cEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 3444444443 24444444444444443
No 219
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.21 E-value=6.2e-06 Score=76.53 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=13.0
Q ss_pred eEeCCCcEe-eceEEcCCCEECCCcEEc
Q 010922 435 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 461 (497)
Q Consensus 435 ~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 461 (497)
+.||.++.| .+|.||+||.||+++++.
T Consensus 125 ~~Ig~~a~I~~gv~Ig~~~~VgagavV~ 152 (169)
T cd03357 125 VWIGGGVIILPGVTIGDNSVIGAGSVVT 152 (169)
T ss_pred EEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 444444444 244555555555555444
No 220
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.19 E-value=1.4e-05 Score=75.09 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=46.0
Q ss_pred CCccCCCeEEcCeEeeceEECCCCEEc-ceEEe---eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcce
Q 010922 360 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVE---HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPI 435 (497)
Q Consensus 360 ~~~~~~~~~i~~~~i~~s~I~~~~~i~-~~~v~---~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~ 435 (497)
.+.+.||...+-. .+..||++++|+ +|.+- .-.||++|.|+++|.|.....-.. ..++..-. +-.-|+
T Consensus 59 ~~~i~~~~~~~~g--~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~-----~~~~~~~~-~~~~~v 130 (183)
T PRK10092 59 EAYIEPTFRCDYG--YNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLD-----PVARNSGA-ELGKPV 130 (183)
T ss_pred CEEEeCCEEEeec--CCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCC-----hHHccccc-eecCCe
Confidence 3445555544200 134455555554 23322 237888888888888863221000 00000000 000136
Q ss_pred EeCCCcEe-eceEEcCCCEECCCcEEcCC
Q 010922 436 GVGRNTKI-RNCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 436 ~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 463 (497)
.||+++.| .+|+|..+++||++++|...
T Consensus 131 ~IGd~v~IG~~a~I~~gv~IG~~~vIgag 159 (183)
T PRK10092 131 TIGNNVWIGGRAVINPGVTIGDNVVVASG 159 (183)
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCC
Confidence 66666666 35666666666666666543
No 221
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=6.3e-06 Score=85.66 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=67.4
Q ss_pred CCCCCCCccCCCeEEc-CeEee-ceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCC
Q 010922 355 TPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEG 431 (497)
Q Consensus 355 ~~i~~~~~~~~~~~i~-~~~i~-~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~ 431 (497)
+.+...+.+++++.|. ++.|. +++||+||.|+ ++.+++|+|.++|+|++++.|.+|+++.+
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~---------------- 319 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN---------------- 319 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC----------------
Confidence 3344455566666664 35554 59999999999 57999999999999999999999999888
Q ss_pred CcceEeCCCcEeeceEEcCCCEECCCcEEcCCCCCCC
Q 010922 432 KVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE 468 (497)
Q Consensus 432 ~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~ 468 (497)
+.||.+. .|++ +.+|.++.+.....+++
T Consensus 320 ---~~ig~~~-----~i~d-~~~g~~~~i~~g~~~~~ 347 (358)
T COG1208 320 ---CKIGASL-----IIGD-VVIGINSEILPGVVVGP 347 (358)
T ss_pred ---cEECCce-----eecc-eEecCceEEcCceEeCC
Confidence 8888822 2777 77777777765544443
No 222
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.15 E-value=1.9e-05 Score=83.54 Aligned_cols=96 Identities=20% Similarity=0.314 Sum_probs=63.5
Q ss_pred CcEEEEcCCeee-ccCHHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEEECCCC---------CEEEEeecCCcccccc
Q 010922 185 ENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKA 254 (497)
Q Consensus 185 e~~LVl~gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~g---------~V~~~~EKp~~~~~~~ 254 (497)
..++|+++|.++ ..+ ...+. + .+.+++++..+.+.+-+++-|+...|+++ .+.+|..||..+....
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 469999999544 333 22222 1 23667888887765556788999999988 7899999999765311
Q ss_pred ccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhh
Q 010922 255 MQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 294 (497)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~ 294 (497)
.. .+ ........++|++.|+.+....++..
T Consensus 130 ~~---av-------~~~~~~~ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 130 SG---AV-------LPDGNVLLDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred CC---cc-------cCCCcccccccceeccHHHHHHHHHh
Confidence 00 00 01133566899999999877766543
No 223
>PRK10191 putative acyl transferase; Provisional
Probab=98.14 E-value=6.9e-06 Score=74.32 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=22.2
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQ 467 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~ 467 (497)
+.||+++.|. +|.|..+++||+++.|.....+.
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~ 126 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVVL 126 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 5677777774 67777777777777776554443
No 224
>PLN02739 serine acetyltransferase
Probab=98.11 E-value=6.2e-06 Score=83.75 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=20.0
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcCCCCCC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQ 467 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~ 467 (497)
+.||+|+.|. ++.|-.|++||++++|+....|-
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCCCEEC
Confidence 5666666664 56666666666666666544443
No 225
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.08 E-value=2.3e-05 Score=77.86 Aligned_cols=61 Identities=13% Similarity=0.286 Sum_probs=35.6
Q ss_pred eEEee-eEEcCCcEECCCCEEcc----e----EEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEcCCCEECCCc
Q 010922 388 CTVEH-SIVGERSRLDYGVELKD----T----VMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 458 (497)
Q Consensus 388 ~~v~~-svIg~~~~i~~~~~i~~----s----~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~ 458 (497)
+.|.| ++||++|.|++++.|.. . +..|.+ +.||.|+.| +..||++|+||+|+
T Consensus 194 g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~------------------~~IGagA~I-GI~IGd~~VVGAGa 254 (319)
T TIGR03535 194 GRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGER------------------CLLGANSGL-GISLGDDCVVEAGL 254 (319)
T ss_pred EEEccCCEECCCCEECCCceecceecCCCcccEEECCC------------------cEECCCCEE-CeEECCCCEECCCC
Confidence 44544 67777777777777443 3 333332 555555555 66677777777776
Q ss_pred EEcCCCCCC
Q 010922 459 VIVNKDDVQ 467 (497)
Q Consensus 459 ~i~~~~~v~ 467 (497)
++.....|.
T Consensus 255 VVtkgT~v~ 263 (319)
T TIGR03535 255 YVTAGTKVT 263 (319)
T ss_pred EEeCCeEEE
Confidence 666554443
No 226
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.07 E-value=2e-05 Score=67.38 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=39.6
Q ss_pred ceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-ceEEcCCCEE
Q 010922 376 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 454 (497)
Q Consensus 376 ~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~I 454 (497)
++.|+++|.|... ...+||++|.|++++.|.... .++...+ ..+.. -|+.||+++.|. +|+|..+++|
T Consensus 9 ~~~I~~~~~i~~~--~~i~IG~~~~I~~~~~I~~~~---h~~~~~~---~~~~~---~~v~Ig~~~~ig~~~~i~~g~~I 77 (107)
T cd05825 9 NSWIGEGVWIYNL--APVTIGSDACISQGAYLCTGS---HDYRSPA---FPLIT---APIVIGDGAWVAAEAFVGPGVTI 77 (107)
T ss_pred CCEECCCCEEeeC--CceEECCCCEECCCeEeecCC---CCCCcCc---cceec---CCEEECCCCEECCCCEECCCCEE
Confidence 3555666666421 346888899988888885421 1100000 00011 125666666663 5555555555
Q ss_pred CCCcEEcCC
Q 010922 455 GKDVVIVNK 463 (497)
Q Consensus 455 g~~~~i~~~ 463 (497)
|++++|...
T Consensus 78 g~~~~i~~g 86 (107)
T cd05825 78 GEGAVVGAR 86 (107)
T ss_pred CCCCEECCC
Confidence 555555543
No 227
>PRK10502 putative acyl transferase; Provisional
Probab=98.06 E-value=1.7e-05 Score=74.54 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.1
Q ss_pred eeEEcCCcEECCCCEEcc
Q 010922 392 HSIVGERSRLDYGVELKD 409 (497)
Q Consensus 392 ~svIg~~~~i~~~~~i~~ 409 (497)
+..||++|.|++++.|.+
T Consensus 71 ~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred eEEECCCeEECCCceecc
Confidence 578999999999998874
No 228
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.00 E-value=4.6e-05 Score=64.26 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=38.0
Q ss_pred eEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcE---eeceEEcCCCE
Q 010922 377 AIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK---IRNCIIDKNVK 453 (497)
Q Consensus 377 s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~---i~~~iI~~~~~ 453 (497)
+.|+++++|... ..++||+++.|++++.|.+. +.|++++. +..++|++++.
T Consensus 9 ~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~~------------------------~~i~~~~~~~~~~~~~Ig~~~~ 62 (101)
T cd03354 9 AKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQG------------------------VTLGGKGKGGGKRHPTIGDNVV 62 (101)
T ss_pred CEECCCEEECCC--CeEEECCCCEECCCCEEcCC------------------------CEECCCccCCcCCCCEECCCcE
Confidence 444445544421 24567777777777765433 45555554 67888888888
Q ss_pred ECCCcEEcCC
Q 010922 454 IGKDVVIVNK 463 (497)
Q Consensus 454 Ig~~~~i~~~ 463 (497)
|+.++.+...
T Consensus 63 Ig~~~~i~~~ 72 (101)
T cd03354 63 IGAGAKILGN 72 (101)
T ss_pred EcCCCEEECc
Confidence 8888887643
No 229
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=97.99 E-value=2.1e-05 Score=73.92 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=17.6
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 462 (497)
+.||.++.|. ++.||+++.||+++++..
T Consensus 136 v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 136 VWIGGRAVINPGVTIGDNVVVASGAVVTK 164 (183)
T ss_pred cEECCCCEECCCCEECCCCEECCCCEEcc
Confidence 6666666663 566666666666666653
No 230
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=97.98 E-value=2.1e-05 Score=76.55 Aligned_cols=97 Identities=21% Similarity=0.305 Sum_probs=57.3
Q ss_pred CCccCCCeEEc-CeEe-eceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEe
Q 010922 360 SPRFLPPTKID-NCRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGV 437 (497)
Q Consensus 360 ~~~~~~~~~i~-~~~i-~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~I 437 (497)
..|+.|++.+. ++.| .+++|.++++|. -++.++.++.|+.++.+..++..|.+ +.|
T Consensus 108 g~RI~p~a~VR~ga~i~~gtvvM~~sfVN----igA~~~~gtMVd~~as~G~~a~VGkn------------------~hi 165 (271)
T COG2171 108 GVRIVPGAIVRLGAYIAKGTVVMPESFVN----IGAGTGEGTMVDGRASVGSCAQVGKN------------------SHI 165 (271)
T ss_pred ceeecCccEEeeccEECCCcEEcccceEE----ECcccCcceEEeeeeeeeccEEECCC------------------ccc
Confidence 35666666552 3333 234444444443 35677777777777777777666654 666
Q ss_pred CCCcEeec---------eEEcCCCEECCCcEEcCCCCCCCCCCCCCCeEE
Q 010922 438 GRNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 478 (497)
Q Consensus 438 g~~~~i~~---------~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i 478 (497)
|-|+-|.. ++|++||.||+|+.+.....+++.+.++.|.||
T Consensus 166 ggGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I 215 (271)
T COG2171 166 GGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFI 215 (271)
T ss_pred CCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEE
Confidence 66666653 799999999999866533333333333333333
No 231
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=97.97 E-value=7.9e-05 Score=63.66 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=18.4
Q ss_pred eEeCCCcEee-ceEEcCCCEECCCcEEcC
Q 010922 435 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 435 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 462 (497)
+.||.++.|. ++.|+++|.|++++.+..
T Consensus 63 ~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~ 91 (107)
T cd05825 63 AWVAAEAFVGPGVTIGEGAVVGARSVVVR 91 (107)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEEeC
Confidence 6666666664 666677777777766654
No 232
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.96 E-value=2.1e-05 Score=73.25 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=16.2
Q ss_pred eEEcCCcEECCCCEEcceEEeCC
Q 010922 393 SIVGERSRLDYGVELKDTVMLGA 415 (497)
Q Consensus 393 svIg~~~~i~~~~~i~~s~i~~~ 415 (497)
.|||+.++||++|.|..++.+|.
T Consensus 88 vVIgeta~IGddv~I~~gVTLGg 110 (194)
T COG1045 88 VVIGETAVIGDDVTIYHGVTLGG 110 (194)
T ss_pred EEEcceeEECCCeEEEcceEecC
Confidence 46777777777777777776666
No 233
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=97.96 E-value=4.8e-05 Score=72.13 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=33.4
Q ss_pred ccCCCeEEcC-eEe---eceEECCCCEEcceEEeeeEEcCCcEECCCCEEc--ceEEeCCc
Q 010922 362 RFLPPTKIDN-CRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELK--DTVMLGAD 416 (497)
Q Consensus 362 ~~~~~~~i~~-~~i---~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~--~s~i~~~~ 416 (497)
.+.||-++.. ..| .++.++.+|.+.--......||+++.|++++.|. ..+.+|++
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~ 91 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD 91 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC
Confidence 4567777742 322 2466666666631111346888888888888886 35555554
No 234
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.91 E-value=2.8e-05 Score=68.35 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=29.6
Q ss_pred ceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceE
Q 010922 376 DAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTV 411 (497)
Q Consensus 376 ~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~ 411 (497)
.++|.+||.|+ +.+.+.-||..|+++.++.|+..+
T Consensus 39 KtIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~ 73 (184)
T KOG3121|consen 39 KTIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPM 73 (184)
T ss_pred cEEEeeCcEEe-cccccceEcceEEeccccccCCch
Confidence 48899999998 677788899999999999887764
No 235
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.90 E-value=0.00013 Score=83.64 Aligned_cols=218 Identities=16% Similarity=0.149 Sum_probs=136.4
Q ss_pred cEEEEcCCeeeccCHHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEEECCC--CCEEEEeecCCccccccccccccccC
Q 010922 186 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSLLG 263 (497)
Q Consensus 186 ~~LVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~d~~--g~V~~~~EKp~~~~~~~~~~~~~~~~ 263 (497)
.++|++||.+..++- .++. -.+++++......+.+-.++.|+...|++ +++..+..||..+...++.-
T Consensus 154 g~li~~gDv~~~f~~--~~~~--~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~------ 223 (974)
T PRK13412 154 HTLIASGDVYIRSEQ--PLQD--IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSK------ 223 (974)
T ss_pred ceEEEecchhhhccc--cccC--CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhc------
Confidence 799999998776542 1111 13456665555555445678999999877 68888999999876433221
Q ss_pred CCccccccCCccceeeEEEEcHHHHHHHHhhhCC------CCCchhhhhHHhhhc----------cCceEEEEe-ccEEE
Q 010922 264 FSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP------TSNDFGSEIIPAAIM----------EHDVQAYIF-RDYWE 326 (497)
Q Consensus 264 ~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~------~~~d~~~~ii~~li~----------~~~v~~~~~-~g~w~ 326 (497)
....+.++|+|+|+.+....+++..+. ...|+.+|+...|-. ..++....+ .+.++
T Consensus 224 -------~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~ 296 (974)
T PRK13412 224 -------THLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFY 296 (974)
T ss_pred -------CCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeE
Confidence 235688999999999987766655321 134667777765432 234444444 45789
Q ss_pred ecCCHHHHHHHHHHhhcCCCCccccCCCCCCCCCCccCCCeEEcCeEeeceEECCCCEEcc--eEEeeeEEcCCcEECCC
Q 010922 327 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE--CTVEHSIVGERSRLDYG 404 (497)
Q Consensus 327 dIgt~~~y~~An~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~I~~~~~i~~--~~v~~svIg~~~~i~~~ 404 (497)
.+||-..|+.....+-... .....+.+...-..|+ +.+.||+++.+|.+++ +.|++|.|+.+.+|+.+
T Consensus 297 H~GTs~E~l~~~~~~q~~~------~~~~~i~~~~~~~~~~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~ 366 (974)
T PRK13412 297 HYGTSRELISSTLAVQNLV------TDQRRIMHRKVKPHPA----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASR 366 (974)
T ss_pred EecCcHHHhcCchhHHHHh------hhhhhhhccccCCCCc----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCC
Confidence 9999998886544433211 0111111111001111 2345788999999984 45789999999999999
Q ss_pred CEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEE
Q 010922 405 VELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 448 (497)
Q Consensus 405 ~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI 448 (497)
+.|.+.-..+-+ ..|.+++.|...=+
T Consensus 367 ~Iisgv~~~~~~------------------~~vP~~~ci~~vpl 392 (974)
T PRK13412 367 SIITGVPENSWN------------------LDLPEGVCIDVVPV 392 (974)
T ss_pred cEEecccccccc------------------eecCCCcEEEEEEc
Confidence 998877543322 56777777654433
No 236
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.89 E-value=0.0013 Score=66.42 Aligned_cols=212 Identities=11% Similarity=0.138 Sum_probs=126.0
Q ss_pred ceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHh----cCCc-EEEEEcccC-hhHHHHHHHhcccCCC
Q 010922 64 VAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQFN-SASLNRHIARTYFGNG 137 (497)
Q Consensus 64 ~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~----~GI~-~I~Iv~~~~-~~~l~~~l~~~y~~~g 137 (497)
.+.+|+||+|.|||| ....||.|+||....+++|..++++.. .|.+ ..+|.|.+. ++...+++.+..+ ..
T Consensus 3 kvavl~LaGG~GTRL---G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~~ 78 (300)
T cd00897 3 KLVVLKLNGGLGTSM---GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-VN 78 (300)
T ss_pred cEEEEEecCCccccc---CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-Cc
Confidence 457899999999997 457899999995444799999999864 3433 456777765 5678888864212 11
Q ss_pred cc---cCCCeE-EEeeCccCC-----CCCCCcc-ccChHHHHHHHHH--HhhhhccCCCCcEEEEcCCeeecc-CHHHHH
Q 010922 138 TN---FGDGFV-EVLAATQTP-----GESGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRM-DYMDFI 204 (497)
Q Consensus 138 ~~---~~~~~V-eIl~~~~~~-----~e~~~~~-~~GTa~aL~~~~~--~i~~~~~~~~e~~LVl~gD~l~~~-dl~~ll 204 (497)
.. |..+.+ .+......+ ......| +.|.++....... .+++....+.+.+.+.+.|.+... |. .++
T Consensus 79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp-~~l 157 (300)
T cd00897 79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDL-RIL 157 (300)
T ss_pred cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCH-HHH
Confidence 10 100000 000000000 0011112 3466665544322 344444567899999999998753 44 578
Q ss_pred HHHHHcCCCeEEEEeeeCCCCCCcceEEE-ECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEE
Q 010922 205 QSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 283 (497)
Q Consensus 205 ~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif 283 (497)
-.|.++++++++=+.+...+ ...-|++. .|..-+|+++.|-|....... . + .......+++.+.|
T Consensus 158 g~~~~~~~~~~~evv~Kt~~-dek~G~l~~~~g~~~vvEyse~p~e~~~~~-~-~-----------~~~~~~~nt~n~~~ 223 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRA-DVKGGTLIQYEGKLRLLEIAQVPKEHVDEF-K-S-----------IKKFKIFNTNNLWV 223 (300)
T ss_pred HHHHhcCCceEEEEeecCCC-CCcccEEEEECCEEEEEEeccCCHHHHHhh-c-C-----------cccceEEEEeEEEE
Confidence 88999999988866554332 12345444 344446778887776532100 0 0 00235678999999
Q ss_pred cHHHHHHHHhh
Q 010922 284 KKDVLFKLLRW 294 (497)
Q Consensus 284 ~~~vL~~ll~~ 294 (497)
+-+.|.++++.
T Consensus 224 ~l~~L~~~~~~ 234 (300)
T cd00897 224 NLKAVKRVVEE 234 (300)
T ss_pred EHHHHHHHHHh
Confidence 99999877644
No 237
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.88 E-value=6.7e-05 Score=67.88 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.8
Q ss_pred eeEEcCCcEECCCCEEcce
Q 010922 392 HSIVGERSRLDYGVELKDT 410 (497)
Q Consensus 392 ~svIg~~~~i~~~~~i~~s 410 (497)
...||++|.|++++.|...
T Consensus 21 ~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred CeEECCCCEECCCCEECCC
Confidence 5789999999999888665
No 238
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=0.00082 Score=63.62 Aligned_cols=216 Identities=17% Similarity=0.184 Sum_probs=133.4
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhcC-CcEEEEEcccChhHHHHHHHhcccCCCcccCCC
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 143 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~G-I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~ 143 (497)
.-|+|+|=|..+|. .-|-+-+++|+ |||.|+++.+.+++ +++|+|-+ . ++.+.+.- +.| |..
T Consensus 4 ~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs-D-s~~Il~~A-~~y-------gak 66 (228)
T COG1083 4 NIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS-D-SEEILEEA-KKY-------GAK 66 (228)
T ss_pred eEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC-C-cHHHHHHH-HHh-------Ccc
Confidence 36899998887884 34999999999 59999999999987 66665544 3 33343322 334 211
Q ss_pred eEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHHHHcCCCeEEEEeee
Q 010922 144 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 221 (497)
Q Consensus 144 ~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h~~~~a~~tl~~~~~ 221 (497)
+-++.+.... .+ ...|-+++..+...+.+ ..+.++++.+-. +...+++++++.+.+++++..+.+.+.
T Consensus 67 -~~~~Rp~~LA----~D-~ast~~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~ 136 (228)
T COG1083 67 -VFLKRPKELA----SD-RASTIDAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVEC 136 (228)
T ss_pred -ccccCChhhc----cC-chhHHHHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeec
Confidence 1111111110 00 12455666777666652 233366666553 556789999999999999888888887
Q ss_pred CCCCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHHHHHHHHhhhCCCCCc
Q 010922 222 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 301 (497)
Q Consensus 222 ~~~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll~~~~~~~~d 301 (497)
+.. + |-.. .+++|.+..+.|.|..... +..+ -..|..+..+|+++++.|.+ + ..-
T Consensus 137 e~~-p--~k~f-~~~~~~~~~~~~~~~~~~r-rQ~L-------------pk~Y~~NgaiYi~~~~~l~e---~----~~~ 191 (228)
T COG1083 137 EHH-P--YKAF-SLNNGEVKPVNEDPDFETR-RQDL-------------PKAYRENGAIYINKKDALLE---N----DCF 191 (228)
T ss_pred ccc-h--HHHH-HhcCCceeecccCCccccc-cccc-------------hhhhhhcCcEEEehHHHHhh---c----Cce
Confidence 642 1 1111 1234778888777643211 0011 02467789999999998863 1 111
Q ss_pred hhhhhHHhhhccCceEEEEecc-EEEecCCHHHHHHHHHHhh
Q 010922 302 FGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALT 342 (497)
Q Consensus 302 ~~~~ii~~li~~~~v~~~~~~g-~w~dIgt~~~y~~An~~l~ 342 (497)
| ..+...|..+. -..||++..|+.-|+..+.
T Consensus 192 f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~ 223 (228)
T COG1083 192 F----------IPNTILYEMPEDESIDIDTELDLEIAENLIF 223 (228)
T ss_pred e----------cCCceEEEcCcccccccccHHhHHHHHHHhh
Confidence 2 12455666543 4679999999999887654
No 239
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=97.74 E-value=0.00019 Score=60.83 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=10.7
Q ss_pred eEeCCCcEe-eceEEcCCCEECCCcEE
Q 010922 435 IGVGRNTKI-RNCIIDKNVKIGKDVVI 460 (497)
Q Consensus 435 ~~Ig~~~~i-~~~iI~~~~~Ig~~~~i 460 (497)
+.||.++.| .++.|++++.|++++.+
T Consensus 65 ~~ig~~~~i~~~~~ig~~~~i~~~~~v 91 (109)
T cd04647 65 VWIGANVVILPGVTIGDGAVVGAGSVV 91 (109)
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEE
Confidence 334444433 24444444444444443
No 240
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.57 E-value=0.0013 Score=61.35 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=58.3
Q ss_pred CCCccccccC--cccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccc
Q 010922 85 AATPAVPVAG--CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 162 (497)
Q Consensus 85 ~PK~LlPI~g--~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~ 162 (497)
.+|+|+|+.| + |||+++++.+. ..+++|+|+++.... |. ..+ +.++.. ... +
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~~---------~~----~~~---~~~i~d-~~~---g---- 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQP---------LP----ELP---APVLRD-ELR---G---- 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCcc---------cc----cCC---CCEecc-CCC---C----
Confidence 4899999999 9 59999999865 568999999975421 10 111 234432 211 1
Q ss_pred cChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee-cc-CHHHHHHHH
Q 010922 163 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMDFIQSH 207 (497)
Q Consensus 163 ~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~-~~-dl~~ll~~h 207 (497)
.|...++..+...... ...+.++|+.||+=+ .. .+..+++.+
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~ 100 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPA 100 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 4666666655443321 134789999999943 43 345555544
No 241
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.55 E-value=0.0021 Score=67.96 Aligned_cols=217 Identities=17% Similarity=0.266 Sum_probs=124.8
Q ss_pred cCCCceEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHh----cCCc-EEEEEcccC-hhHHHHHHHhcc
Q 010922 60 VKPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQFN-SASLNRHIARTY 133 (497)
Q Consensus 60 ~~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~----~GI~-~I~Iv~~~~-~~~l~~~l~~~y 133 (497)
.....+..|+||+|.||||. ...||.++||....+++|..++++.. .|.+ -.+|.+.+. +++..+++.+ |
T Consensus 52 ~~~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-y 127 (420)
T PF01704_consen 52 IALGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-Y 127 (420)
T ss_dssp HHTTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-G
T ss_pred HhhCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-h
Confidence 34556788999999999985 57899999996554799988888765 3433 456667655 6778888866 8
Q ss_pred cCCCccc---CCCeEEEee-CccCCCCC-------CCcc-ccChHHHHHHHH--HHhhhhccCCCCcEEEEcCCeeeccC
Q 010922 134 FGNGTNF---GDGFVEVLA-ATQTPGES-------GKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMD 199 (497)
Q Consensus 134 ~~~g~~~---~~~~VeIl~-~~~~~~e~-------~~~~-~~GTa~aL~~~~--~~i~~~~~~~~e~~LVl~gD~l~~~d 199 (497)
++..... ....+-.+. ....+-+. ...| +-|.|+...... ..+++....+.+.+.|.+.|.+...-
T Consensus 128 fg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~ 207 (420)
T PF01704_consen 128 FGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVV 207 (420)
T ss_dssp CGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT
T ss_pred cCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCccccc
Confidence 6543321 000000010 01000000 0123 347776554432 24444445678999999999977543
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEE-ECCCCCEEEEeecCCccccccccccccccCCCccccccCCcccee
Q 010922 200 YMDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 278 (497)
Q Consensus 200 l~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (497)
=-.++..+.++++++.+-+.+...+ ...-|++. .|..-+|+++.+-|...... .. + .......++
T Consensus 208 Dp~~lG~~~~~~~~~~~evv~Kt~~-dek~Gvl~~~~G~~~vvEysqip~~~~~~-~~-~-----------~~~~~~Fnt 273 (420)
T PF01704_consen 208 DPVFLGYMIEKNADFGMEVVPKTSP-DEKGGVLCRYDGKLQVVEYSQIPKEHMAE-FK-D-----------IKGFLLFNT 273 (420)
T ss_dssp -HHHHHHHHHTT-SEEEEEEE-CST-TTSSEEEEEETTEEEEEEGGGS-HHGHHH-HT-S-----------TTTSBEEEE
T ss_pred CHHHHHHHHhccchhheeeeecCCC-CCceeEEEEeCCccEEEEeccCCHHHHHh-hh-c-----------cccceEEEe
Confidence 3457888999999998877765432 12355554 33223455565555431100 00 0 002345688
Q ss_pred eEEEEcHHHHHHHHhh
Q 010922 279 GVYVFKKDVLFKLLRW 294 (497)
Q Consensus 279 Giyif~~~vL~~ll~~ 294 (497)
|--.|+-+.|.++++.
T Consensus 274 nNi~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 274 NNIWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEEEHHHHHHHHHT
T ss_pred ceeeEEHHHHHHHHHh
Confidence 8889999999887765
No 242
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.46 E-value=0.00045 Score=77.84 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=44.9
Q ss_pred ceEECCCCEEcceEE---eeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-ceEEcCC
Q 010922 376 DAIISHGCFLRECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 451 (497)
Q Consensus 376 ~s~I~~~~~i~~~~v---~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~ 451 (497)
.+.||+||+|+...+ ....||++|.|+++|.|.+..+.+.. +.-| |+.||+||.|. +|+|.+|
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~-----------l~~g--~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGR-----------LHTG--PVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCc-----------eeec--CcEECCCcEECCCCEEcCC
Confidence 355677777764222 24567888888888877553322110 0001 16677777773 6666666
Q ss_pred CEECCCcEEcCCCCCC
Q 010922 452 VKIGKDVVIVNKDDVQ 467 (497)
Q Consensus 452 ~~Ig~~~~i~~~~~v~ 467 (497)
++||++++|.....+.
T Consensus 179 ~~Igd~a~vgagS~V~ 194 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQ 194 (695)
T ss_pred CEECCCCEECCCCEec
Confidence 6666666666544443
No 243
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.44 E-value=0.00039 Score=65.27 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=43.2
Q ss_pred ceEECCCCEEc-ceEE---eeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhh-cCCCcceEeCCCcEee-ceEEc
Q 010922 376 DAIISHGCFLR-ECTV---EHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLL-AEGKVPIGVGRNTKIR-NCIID 449 (497)
Q Consensus 376 ~s~I~~~~~i~-~~~v---~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~-~~~~~~~~Ig~~~~i~-~~iI~ 449 (497)
+..+|..|+++ ++.+ .+..||+++.+++++.|...-.... .+.+... ..+.-|+.||+++.|. +++|.
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~------~~~~~~~~~~~~~~v~IG~~vwIG~~a~Il 140 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGD------FVTANIGALVGAGPVTIGEDVWIGAGAVIL 140 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCC------hhhcccCCceecCCeEECCCeEEcCccEEC
Confidence 45666777766 3332 3456888888888888875422111 0000000 2223346666666663 55555
Q ss_pred CCCEECCCcEEcCC
Q 010922 450 KNVKIGKDVVIVNK 463 (497)
Q Consensus 450 ~~~~Ig~~~~i~~~ 463 (497)
++++||+|++|+..
T Consensus 141 pGV~IG~gavigag 154 (190)
T COG0110 141 PGVTIGEGAVIGAG 154 (190)
T ss_pred CCEEECCCcEEeeC
Confidence 55555555555543
No 244
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.39 E-value=0.00053 Score=77.28 Aligned_cols=74 Identities=16% Similarity=0.359 Sum_probs=40.9
Q ss_pred ceEECCCCEEcceEE-e--eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-ceEEcCC
Q 010922 376 DAIISHGCFLRECTV-E--HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKN 451 (497)
Q Consensus 376 ~s~I~~~~~i~~~~v-~--~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~ 451 (497)
++.||++|.|+...+ + .++||++|.|+++|.|.... +.+..+. .+ ++.||++|.|. +|+|..+
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~-~~~~~~~---------~~---~v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHL-FEDRVMK---------SD---TVTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecc-ccccccc---------cC---CeEECCCCEECCCCEECCC
Confidence 456677777764222 1 26899999999999987532 2221110 01 15556555553 4555555
Q ss_pred CEECCCcEEcC
Q 010922 452 VKIGKDVVIVN 462 (497)
Q Consensus 452 ~~Ig~~~~i~~ 462 (497)
++||++++|..
T Consensus 664 ~~IGd~a~Ig~ 674 (695)
T TIGR02353 664 VVMGEGSVLGP 674 (695)
T ss_pred CEECCCCEECC
Confidence 55555555543
No 245
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.34 E-value=0.0021 Score=61.26 Aligned_cols=114 Identities=19% Similarity=0.334 Sum_probs=75.5
Q ss_pred eEEEEecCCCCCcccCCCCCCC-CccccccCcccchhHhHHHHHhcC-CcEEEEEcccChh--HHHHHHHhcccCCCccc
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAA-TPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSA--SLNRHIARTYFGNGTNF 140 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~P-K~LlPI~g~p~LId~~L~~l~~~G-I~~I~Iv~~~~~~--~l~~~l~~~y~~~g~~~ 140 (497)
|-++|+.|-.|+. .+| |.|+|+++. |||+++|+++..+- +++|+|.|....+ .|..+..+ .
T Consensus 3 ~I~~IiQARmgSt------RLpgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~--------~ 67 (241)
T COG1861 3 MILVIIQARMGST------RLPGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS--------H 67 (241)
T ss_pred cEEEEeeecccCc------cCCcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH--------c
Confidence 5567777644432 233 999999999 59999999999874 7899999986543 35555532 1
Q ss_pred CCCeEEEeeCccCCCCCCCccccCh-HHHHHHHHHHhhhhccCCCCcEEEEcCCe-eeccCH-HHHHHHHHHcCCC
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGT-ADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQSHVDRDAD 213 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GT-a~aL~~~~~~i~~~~~~~~e~~LVl~gD~-l~~~dl-~~ll~~h~~~~a~ 213 (497)
| +.+. .|+ .+.|.++...++ ....+.++=+.||. +.+..+ ..+++.|.++++|
T Consensus 68 G---~~vf--------------rGs~~dVL~Rf~~a~~---a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 68 G---FYVF--------------RGSEEDVLQRFIIAIK---AYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred C---eeEe--------------cCCHHHHHHHHHHHHH---hcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 2 2332 244 445555555554 23445788899998 445554 5678899988774
No 246
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.19 E-value=0.012 Score=59.82 Aligned_cols=216 Identities=11% Similarity=0.117 Sum_probs=122.7
Q ss_pred EEEEecCCCCCcccCCCCCCCCccccc---cCcccchhHhHHHHHhc--------CCc-EEEEEcccC-hhHHHHHHHh-
Q 010922 66 YAVMTSKHPNEVMTLAPPRAATPAVPV---AGCYRLIDIPMSNCINS--------GIN-KIFVLTQFN-SASLNRHIAR- 131 (497)
Q Consensus 66 ~aVIlaaG~G~Rl~Plt~~~PK~LlPI---~g~p~LId~~L~~l~~~--------GI~-~I~Iv~~~~-~~~l~~~l~~- 131 (497)
.+|+||+|.||||. ..-||.++|| .|+ ++++..++++... +.. ..+|.|.+. +++..+++.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999965 5799999999 478 6999999988652 221 457778765 5678888864
Q ss_pred cccCCCcc----cCCCeEEEee-CccCC---CCC--CC-ccccChHHHHHHHHH--HhhhhccCCCCcEEEEcCCeee-c
Q 010922 132 TYFGNGTN----FGDGFVEVLA-ATQTP---GES--GK-NWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY-R 197 (497)
Q Consensus 132 ~y~~~g~~----~~~~~VeIl~-~~~~~---~e~--~~-~~~~GTa~aL~~~~~--~i~~~~~~~~e~~LVl~gD~l~-~ 197 (497)
.||+-... |..+.+-.+. .+... .++ .. ..+.|.++....... .+++....+.+.+.+..-|... .
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 34553211 1000111111 00000 000 00 114577776655432 3444445677889998888755 3
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEEE--CCCCC--E--EEEeecCCcccc---ccccccccccCCCccc
Q 010922 198 MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR--I--AQFAEKPSGANL---KAMQVDTSLLGFSPQE 268 (497)
Q Consensus 198 ~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~--d~~g~--V--~~~~EKp~~~~~---~~~~~~~~~~~~~~~~ 268 (497)
.-.-.++-.+..+++++...+.+... ...-|++.. ..+|+ | +++.|-+..-.. .....+. -.+.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~---- 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGF---- 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-cccc----
Confidence 33345556677788888776655332 234676642 23343 4 666665432100 0000000 0011
Q ss_pred cccCCccceeeEEEEcHHHHHHHHhhh
Q 010922 269 ARKCPYVASMGVYVFKKDVLFKLLRWR 295 (497)
Q Consensus 269 ~~~~~~l~~~Giyif~~~vL~~ll~~~ 295 (497)
...-.+++.++|+-+.+.+.+++.
T Consensus 231 ---s~f~gNi~~~~f~l~~~~~~l~~~ 254 (315)
T cd06424 231 ---SPFPGNINQLVFSLGPYMDELEKT 254 (315)
T ss_pred ---ccCCCeeeeEEEeHHHHHHHHhhc
Confidence 234679999999999988877653
No 247
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0007 Score=64.23 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=14.3
Q ss_pred eEeCCCcEe-eceEEcCCCEECCCcEEc
Q 010922 435 IGVGRNTKI-RNCIIDKNVKIGKDVVIV 461 (497)
Q Consensus 435 ~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 461 (497)
+-||.++.| .|.-||+|++|++|+++.
T Consensus 207 vliGaGvtILgnV~IGegavIaAGsvV~ 234 (269)
T KOG4750|consen 207 VLIGAGVTILGNVTIGEGAVIAAGSVVL 234 (269)
T ss_pred eEEccccEEeCCeeECCCcEEeccceEE
Confidence 445555444 355555666666655444
No 248
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.13 E-value=0.00068 Score=67.91 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=59.4
Q ss_pred CeEe-eceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEeeceEEc
Q 010922 371 NCRI-KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 449 (497)
Q Consensus 371 ~~~i-~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~ 449 (497)
++.+ ++.++.+-..+| ++|.||+++.||++|+|.+.+.+.. +.+..+ ..++.++-|..|++|
T Consensus 258 ~~~i~~nvlvd~~~~iG----~~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~---~~~~~~s~i~s~ivg 320 (371)
T KOG1322|consen 258 GSKIVGNVLVDSIASIG----ENCSIGPNVVIGPRVRIEDGVRLQD----------STILGA---DYYETHSEISSSIVG 320 (371)
T ss_pred CccccccEeeccccccC----CccEECCCceECCCcEecCceEEEe----------eEEEcc---ceechhHHHHhhhcc
Confidence 3343 345555555555 5678888888888888888887765 333333 566667777788888
Q ss_pred CCCEECCCcEEcCCCCCCCCCCCCCCeEEcc
Q 010922 450 KNVKIGKDVVIVNKDDVQEADRPELGFYIRS 480 (497)
Q Consensus 450 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~i~~ 480 (497)
.++.||.++.|.+...++++..+...-|+.+
T Consensus 321 ~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~ 351 (371)
T KOG1322|consen 321 WNVPIGIWARIDKNAVLGKNVIVADEDYVNE 351 (371)
T ss_pred ccccccCceEEecccEeccceEEeccccccc
Confidence 8888888888776644444433333333333
No 249
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.05 E-value=0.019 Score=61.71 Aligned_cols=216 Identities=13% Similarity=0.176 Sum_probs=128.5
Q ss_pred cccCCCceEEEEecCCCCCcccCCCCCCCCcccccc---CcccchhHhHHHHHhc--------------CCc-EEEEEcc
Q 010922 58 EKVKPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVA---GCYRLIDIPMSNCINS--------------GIN-KIFVLTQ 119 (497)
Q Consensus 58 ~~~~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~---g~p~LId~~L~~l~~~--------------GI~-~I~Iv~~ 119 (497)
+.++...+.+|+||+|.||||. ...||.|+||+ ++ ++++...+++... +.. ..+|.|.
T Consensus 110 ~~I~~gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS 185 (493)
T PLN02435 110 KAISEGKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTS 185 (493)
T ss_pred HHHhcCCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCC
Confidence 3344566788999999999965 67899999885 77 6999999886431 121 3477777
Q ss_pred cC-hhHHHHHHHh-cccCCCcccCCCeEEEee-----C----ccCCCCC--CC-ccccChHHHHHHHHH--HhhhhccCC
Q 010922 120 FN-SASLNRHIAR-TYFGNGTNFGDGFVEVLA-----A----TQTPGES--GK-NWFQGTADAVRQFTW--VFEDAKNRN 183 (497)
Q Consensus 120 ~~-~~~l~~~l~~-~y~~~g~~~~~~~VeIl~-----~----~~~~~e~--~~-~~~~GTa~aL~~~~~--~i~~~~~~~ 183 (497)
+. ++...+++.+ .||+-... .|.++. . ...+-++ .- .-+.|.++....... .+++....+
T Consensus 186 ~~T~~~T~~ff~~~~~FGl~~~----~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~G 261 (493)
T PLN02435 186 PFTDEATRKFFESHKYFGLEAD----QVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRG 261 (493)
T ss_pred cchhHHHHHHHHhCCCCCCCcc----ceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcC
Confidence 55 5678888864 34553211 122110 0 0000000 00 123577777665433 455555678
Q ss_pred CCcEEEEcCCee-eccCHHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEEE-CCCCC--EEEEeecCCccccccccccc
Q 010922 184 IENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGR--IAQFAEKPSGANLKAMQVDT 259 (497)
Q Consensus 184 ~e~~LVl~gD~l-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~-d~~g~--V~~~~EKp~~~~~~~~~~~~ 259 (497)
.+.+.+.+.|.+ ...---.++-.+...++++.+-+.+..++ ...-|++.. +.+|+ |+++.|-+.......
T Consensus 262 i~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~----- 335 (493)
T PLN02435 262 IKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASAI----- 335 (493)
T ss_pred CEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhcc-----
Confidence 899999999995 44433467888889999988876654321 123576654 34454 666666544221100
Q ss_pred cccCCCccccccCCccceeeEEEEcHHHHHHHH
Q 010922 260 SLLGFSPQEARKCPYVASMGVYVFKKDVLFKLL 292 (497)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~Giyif~~~vL~~ll 292 (497)
+++.-.......+++.++|+-++|.++.
T Consensus 336 -----~~~~g~L~~~~gnI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 336 -----NQQTGRLRYCWSNVCLHMFTLDFLNQVA 363 (493)
T ss_pred -----CccccccccchhhHHHhhccHHHHHHHH
Confidence 0000001235678899999999998764
No 250
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.029 Score=59.30 Aligned_cols=214 Identities=15% Similarity=0.241 Sum_probs=126.2
Q ss_pred CCCceEEEEecCCCCCcccCCCCCCCCcccccc-CcccchhHhHHHHHh----cCCc-EEEEEcccChhH-HHHHHHhcc
Q 010922 61 KPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVA-GCYRLIDIPMSNCIN----SGIN-KIFVLTQFNSAS-LNRHIARTY 133 (497)
Q Consensus 61 ~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~-g~p~LId~~L~~l~~----~GI~-~I~Iv~~~~~~~-l~~~l~~~y 133 (497)
....+.+|.||+|.|+||. ..-||.+++|. |+ +++|.+++.... .+++ ..+|.+..+.++ ..-+....|
T Consensus 102 ~~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y 177 (472)
T COG4284 102 KLGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY 177 (472)
T ss_pred hcCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh
Confidence 3556788999999999975 56899999999 66 799999988765 3544 456667777744 333444556
Q ss_pred cCC-Ccc---cCCC-eEEEeeCccCC--CCCC--Ccc-ccChHHHHHHHHH--HhhhhccCCCCcEEEEcCCeeec-cCH
Q 010922 134 FGN-GTN---FGDG-FVEVLAATQTP--GESG--KNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYR-MDY 200 (497)
Q Consensus 134 ~~~-g~~---~~~~-~VeIl~~~~~~--~e~~--~~~-~~GTa~aL~~~~~--~i~~~~~~~~e~~LVl~gD~l~~-~dl 200 (497)
++. ... |... ...++..+..+ ..++ ..| +.|.++-...... .+++..+.+.+.+.|.+.|.+.. .|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 653 111 1000 00111110000 0001 123 3566654443332 34444456789999999999663 465
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEE-ECCCCCEEEEeecCCccccccccccccccCCCccccccCCccce-e
Q 010922 201 MDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-M 278 (497)
Q Consensus 201 ~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 278 (497)
.++..+...+.++++=....... ..+-|++. .|..-||+++.+-|.......+.. -.......+ .
T Consensus 258 -~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s~-----------~~~~~~n~Nni 324 (472)
T COG4284 258 -KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFTSD-----------GKLKYFNTNNI 324 (472)
T ss_pred -HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhccc-----------cceeeeccccc
Confidence 56788889998888766553321 23456555 777789999988877421100000 000113345 7
Q ss_pred eEEEEcHHHHHHH
Q 010922 279 GVYVFKKDVLFKL 291 (497)
Q Consensus 279 Giyif~~~vL~~l 291 (497)
++|+++-+.+.+.
T Consensus 325 ~l~~~~~~~l~~~ 337 (472)
T COG4284 325 WLHLFSVKFLKEA 337 (472)
T ss_pred eeehhHHHHHHhh
Confidence 8898888887653
No 251
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.94 E-value=0.0023 Score=61.07 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=38.8
Q ss_pred CCCeEEcCeEe---eceEECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCC
Q 010922 364 LPPTKIDNCRI---KDAIISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRN 440 (497)
Q Consensus 364 ~~~~~i~~~~i---~~s~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 440 (497)
.|+|.++.+.+ .+.+||+++.+. -.++|+...+++++.|.+.++-++ +.|+.+
T Consensus 7 Pp~Tr~e~~~ivv~gdViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw 62 (277)
T COG4801 7 PPNTRVEEAIIVVKGDVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMW 62 (277)
T ss_pred CCCCceeeeeEEEeccEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeee
Confidence 44555544333 246666666554 345555555555555555554433 555555
Q ss_pred cEee-ceEEcCCCEECCCcEEc
Q 010922 441 TKIR-NCIIDKNVKIGKDVVIV 461 (497)
Q Consensus 441 ~~i~-~~iI~~~~~Ig~~~~i~ 461 (497)
|++. |.+.+.++-||+.+.|.
T Consensus 63 ~kv~gNV~ve~dayiGE~~sI~ 84 (277)
T COG4801 63 CKVTGNVIVENDAYIGEFSSIK 84 (277)
T ss_pred eEeeccEEEcCceEEeccceee
Confidence 5553 45555555555554444
No 252
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=96.81 E-value=0.014 Score=55.85 Aligned_cols=179 Identities=21% Similarity=0.261 Sum_probs=98.7
Q ss_pred EEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhc-CCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeE
Q 010922 67 AVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 145 (497)
Q Consensus 67 aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~-GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~V 145 (497)
|||.|=+..+||. -|.|.|++|+ |||+|+++.+.++ .+++|+|-|.. +.+.+.+ +.| | ..|
T Consensus 2 aiIpAR~gS~rlp------~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~-~~~-------g-~~v 63 (217)
T PF02348_consen 2 AIIPARGGSKRLP------GKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIA-EEY-------G-AKV 63 (217)
T ss_dssp EEEEE-SSSSSST------TGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHH-HHT-------T-SEE
T ss_pred EEEecCCCCCCCC------cchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHH-HHc-------C-Cee
Confidence 7888877777753 2999999999 5999999999987 57898887764 3444444 322 2 113
Q ss_pred EEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeee--ccCHHHHHHHHHHcCCC-eEEEEeeeC
Q 010922 146 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDAD-ITISCAAVG 222 (497)
Q Consensus 146 eIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~--~~dl~~ll~~h~~~~a~-~tl~~~~~~ 222 (497)
....... ..++......+..+.. ...+.++.+.||.-+ ...+..+++.+.+..++ +.-...+..
T Consensus 64 ~~~~~~~---------~~~~~r~~~~~~~~~~----~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 130 (217)
T PF02348_consen 64 IFRRGSL---------ADDTDRFIEAIKHFLA----DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPVG 130 (217)
T ss_dssp EE--TTS---------SSHHHHHHHHHHHHTC----STTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEEC
T ss_pred EEcChhh---------cCCcccHHHHHHHhhh----hHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhcccccccc
Confidence 2222211 1244333322222222 122378888999844 34678889999888776 333333322
Q ss_pred C----CCCCcceEEEECCCCCEEEEeecCCccccccccccccccCCCccccccCCccceeeEEEEcHH-HHH
Q 010922 223 E----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLF 289 (497)
Q Consensus 223 ~----~~~~~~g~v~~d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~-vL~ 289 (497)
. .....+ ....+.++....+.+.+....... +... ...++...++|.+++. .+.
T Consensus 131 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (217)
T PF02348_consen 131 SSVEIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRN-----------PEEF-KYFYIRQVGIYAFRKEMFLE 189 (217)
T ss_dssp SHHHHTSTTST-EEEECTTSBEEEEESSESSECHHH-----------HCSS-SSTEEEEEEEEEEEHHHHHH
T ss_pred chhhcccccce-EEEeccccchhhcccCCCcccccc-----------cccc-cccccccccccccccccccc
Confidence 1 011112 223344555555655544321110 0000 0124667999999997 443
No 253
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.69 E-value=0.0024 Score=56.87 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=35.1
Q ss_pred CCccCCCeEE-cCeEe-eceEECCCCEEcc-eEE----eeeEEcCCcEECCCCEEcc
Q 010922 360 SPRFLPPTKI-DNCRI-KDAIISHGCFLRE-CTV----EHSIVGERSRLDYGVELKD 409 (497)
Q Consensus 360 ~~~~~~~~~i-~~~~i-~~s~I~~~~~i~~-~~v----~~svIg~~~~i~~~~~i~~ 409 (497)
+..+.|.+.+ ..+.| .|..|++||++.. +.+ -.-+||+++.|++.+.|.+
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 4456666666 34555 3788999999884 333 2358999999998888866
No 254
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.65 E-value=0.0015 Score=44.04 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=10.4
Q ss_pred eEeCCCcEe-eceEEcCCCEECCCcEE
Q 010922 435 IGVGRNTKI-RNCIIDKNVKIGKDVVI 460 (497)
Q Consensus 435 ~~Ig~~~~i-~~~iI~~~~~Ig~~~~i 460 (497)
+.|++++.| .+|.|++++.|++++.|
T Consensus 8 ~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 8 VIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEECCCcEecCCCEECCCCEEcCCCEE
Confidence 344444443 24444444444444443
No 255
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=96.62 E-value=0.015 Score=52.57 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=7.0
Q ss_pred ceEEcCCCEECCCcEEc
Q 010922 445 NCIIDKNVKIGKDVVIV 461 (497)
Q Consensus 445 ~~iI~~~~~Ig~~~~i~ 461 (497)
++.|+++|.||+++++.
T Consensus 91 gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 91 GVTIGDGAVIAAGAVVT 107 (145)
T ss_pred CCEECCCCEECCCCEEc
Confidence 33444444444444433
No 256
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.59 E-value=0.0075 Score=57.66 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=56.2
Q ss_pred eEeeceEECCCCEEcc-eEEeeeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEee-ceEEc
Q 010922 372 CRIKDAIISHGCFLRE-CTVEHSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIID 449 (497)
Q Consensus 372 ~~i~~s~I~~~~~i~~-~~v~~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~ 449 (497)
+.++-.++++...+++ +.|...+++.+++|+.+|.+...++.+++ ..||+.+.|. .-++.
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~ 90 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVI 90 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEe
Confidence 4454455666666663 56667899999999999999999999887 8899999996 45555
Q ss_pred CCCEECCCcEEcCC
Q 010922 450 KNVKIGKDVVIVNK 463 (497)
Q Consensus 450 ~~~~Ig~~~~i~~~ 463 (497)
-.-.||+++.|.+.
T Consensus 91 gdLdig~dV~Iegg 104 (277)
T COG4801 91 GDLDIGADVIIEGG 104 (277)
T ss_pred cccccccceEEecC
Confidence 56788888888753
No 257
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.40 E-value=0.0071 Score=53.52 Aligned_cols=53 Identities=17% Similarity=0.351 Sum_probs=32.9
Q ss_pred eeEEcCCcEECCCCEEcceEEeCCccccchhHHHHhhcCCCcceEeCCCcEe-eceEEcCCCEECCCcEEcCC
Q 010922 392 HSIVGERSRLDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 463 (497)
Q Consensus 392 ~svIg~~~~i~~~~~i~~s~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 463 (497)
..-||+++.|+++|++....|..- +.+|.|+.| ++|+|-+-|+|-+++++-..
T Consensus 84 p~hiGdhVFieE~cVVnAAqIgsy-------------------Vh~GknaviGrrCVlkdCc~ild~tVlPpe 137 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVNAAQIGSY-------------------VHLGKNAVIGRRCVLKDCCRILDDTVLPPE 137 (184)
T ss_pred eeeecceEEEecceEeehhhheee-------------------eEeccceeEcCceEhhhheeccCCcccCcc
Confidence 456777777777777665554333 666666666 35666666666666665543
No 258
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=96.30 E-value=0.013 Score=55.93 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=21.2
Q ss_pred EECCCCEEcceEEeeeEEcCCcEECCCCEEcceEEeCC
Q 010922 378 IISHGCFLRECTVEHSIVGERSRLDYGVELKDTVMLGA 415 (497)
Q Consensus 378 ~I~~~~~i~~~~v~~svIg~~~~i~~~~~i~~s~i~~~ 415 (497)
.||.|-++..+ ...+||+-++||.+|.|-..+-+|+
T Consensus 156 ~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlgg 191 (269)
T KOG4750|consen 156 KIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGG 191 (269)
T ss_pred hcccceeeccc--cceeecceeEeccceeeecceeecc
Confidence 34444444411 2357777777777777766666665
No 259
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.08 E-value=0.015 Score=51.93 Aligned_cols=42 Identities=12% Similarity=0.065 Sum_probs=21.5
Q ss_pred eeEEcCCcEECCCCEEc---ceE-EeCCccccchhHHHHhhcCCCc
Q 010922 392 HSIVGERSRLDYGVELK---DTV-MLGADYYQTESEIASLLAEGKV 433 (497)
Q Consensus 392 ~svIg~~~~i~~~~~i~---~s~-i~~~~~~~~~~~~~~~~~~~~~ 433 (497)
..+|++||+|.+.+++. +-+ +..+++++.-+-|+..+-+|-+
T Consensus 26 dvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~ 71 (190)
T KOG4042|consen 26 DVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAV 71 (190)
T ss_pred ceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCc
Confidence 35677777777766662 222 2233444444444554444444
No 260
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.07 E-value=0.55 Score=52.13 Aligned_cols=220 Identities=12% Similarity=0.112 Sum_probs=122.7
Q ss_pred CceEEEEecCCCCCcccCCCCCCCCcccccc---CcccchhHhHHHHHhc-----------CCc-EEEEEcccC-hhHHH
Q 010922 63 GVAYAVMTSKHPNEVMTLAPPRAATPAVPVA---GCYRLIDIPMSNCINS-----------GIN-KIFVLTQFN-SASLN 126 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~---g~p~LId~~L~~l~~~-----------GI~-~I~Iv~~~~-~~~l~ 126 (497)
..+..|+||+|.||||. ..-||.++|++ |+ ++++..++++... +.. -.+|.|.+. ++...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 56789999999999975 56899999983 77 6999999987553 111 457777765 56778
Q ss_pred HHHHhc-ccCCCcc----cCCCeEEEee-CccCC-CCC----CCc-cccChHHHHHHHHH--HhhhhccCCCCcEEEEcC
Q 010922 127 RHIART-YFGNGTN----FGDGFVEVLA-ATQTP-GES----GKN-WFQGTADAVRQFTW--VFEDAKNRNIENVAILCG 192 (497)
Q Consensus 127 ~~l~~~-y~~~g~~----~~~~~VeIl~-~~~~~-~e~----~~~-~~~GTa~aL~~~~~--~i~~~~~~~~e~~LVl~g 192 (497)
+++.+. ||+.... |..+.+-.+. .+..+ .++ ... .+.|.++..+.... .+++....+.+.+.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 888643 4543211 0000000010 00000 000 001 23566665544322 344444567889999999
Q ss_pred Ceee-ccCHHHHHHHHHHcCCCeEEEEeeeCCCCCCcceEEEE--CCCCC----EEEEeecCCccccccccccc-cccCC
Q 010922 193 DHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR----IAQFAEKPSGANLKAMQVDT-SLLGF 264 (497)
Q Consensus 193 D~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~~--d~~g~----V~~~~EKp~~~~~~~~~~~~-~~~~~ 264 (497)
|... ....-.++-.+..+++++.+-+.+... ...-|++.. ..+|+ ++++.|.+..-.. .+... .+-..
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~--a~~p~g~l~~~ 358 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLRA--TGHPDGDVNDE 358 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHHh--ccCCCcccccc
Confidence 9843 333367888899999998887766532 234555543 23344 3455555432110 00000 00000
Q ss_pred CccccccCCccceeeEEEEcHHHHHHHHhh
Q 010922 265 SPQEARKCPYVASMGVYVFKKDVLFKLLRW 294 (497)
Q Consensus 265 ~~~~~~~~~~l~~~Giyif~~~vL~~ll~~ 294 (497)
+ . ....-.++..-+++-..+.+.|++
T Consensus 359 ~-~---~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 359 T-G---YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred c-c---cccCCCCceeeEeeHHHHHHHHHh
Confidence 0 0 011224888889998888777764
No 261
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=95.91 E-value=0.0085 Score=40.32 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=6.2
Q ss_pred eEEcCCcEECCCCEE
Q 010922 393 SIVGERSRLDYGVEL 407 (497)
Q Consensus 393 svIg~~~~i~~~~~i 407 (497)
++||++|.|++++.|
T Consensus 20 ~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 20 VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEE-TTEEEETTEEE
T ss_pred CEECCCCEEcCCCEE
Confidence 444444444444443
No 262
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.68 E-value=0.0092 Score=40.05 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=3.0
Q ss_pred cCCCEECCCcE
Q 010922 449 DKNVKIGKDVV 459 (497)
Q Consensus 449 ~~~~~Ig~~~~ 459 (497)
|+||.||+++.
T Consensus 5 G~~~~ig~~~~ 15 (34)
T PF14602_consen 5 GDNCFIGANST 15 (34)
T ss_dssp -TTEEE-TT-E
T ss_pred CCCEEECcccc
Confidence 33333333333
No 263
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=95.65 E-value=0.031 Score=52.29 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=14.0
Q ss_pred CCCCCeEEccccEEEccCcEECCCccC
Q 010922 471 RPELGFYIRSGITIIMEKATIEDGMVI 497 (497)
Q Consensus 471 ~~~~~~~i~~g~~vi~~~~~i~~g~~i 497 (497)
.++.++.|..| +.||+|++|++|+++
T Consensus 132 wIG~~a~IlpG-V~IG~gavigagsVV 157 (190)
T COG0110 132 WIGAGAVILPG-VTIGEGAVIGAGSVV 157 (190)
T ss_pred EEcCccEECCC-EEECCCcEEeeCCEE
Confidence 33344444444 345777777777653
No 264
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.57 E-value=0.015 Score=39.00 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=11.1
Q ss_pred EECCCCEEc-ceEEeeeEEcCCcEECCCCEE
Q 010922 378 IISHGCFLR-ECTVEHSIVGERSRLDYGVEL 407 (497)
Q Consensus 378 ~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i 407 (497)
.||++|+|+ ++.+ ...||++|.|++|+.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 445555555 2222 2455555555555544
No 265
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.04 E-value=1.2 Score=46.46 Aligned_cols=151 Identities=11% Similarity=0.247 Sum_probs=85.1
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccccccCcccchhHhHHHHHhc----CCcE-EEEEcccCh-hHHHHHHHhcccCCCc
Q 010922 65 AYAVMTSKHPNEVMTLAPPRAATPAVPVAGCYRLIDIPMSNCINS----GINK-IFVLTQFNS-ASLNRHIARTYFGNGT 138 (497)
Q Consensus 65 m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~p~LId~~L~~l~~~----GI~~-I~Iv~~~~~-~~l~~~l~~~y~~~g~ 138 (497)
+..+=|-+|.|+.|. -.-||.+++|-+-.+.+|-++.+..+. .++- .++...++- ++....+ +.|.+..+
T Consensus 104 LavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil-~ky~~~kv 179 (498)
T KOG2638|consen 104 LAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKIL-KKYAGSKV 179 (498)
T ss_pred eEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHH-HHhcCCce
Confidence 446668999999986 468999999976667888777665542 3442 334444554 4455555 45533322
Q ss_pred --------ccCCCeE-EEeeCcc-CCCCCCCccc-cChHHHHHHHH--HHhhhhccCCCCcEEEEcCCeeec-cCHHHHH
Q 010922 139 --------NFGDGFV-EVLAATQ-TPGESGKNWF-QGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR-MDYMDFI 204 (497)
Q Consensus 139 --------~~~~~~V-eIl~~~~-~~~e~~~~~~-~GTa~aL~~~~--~~i~~~~~~~~e~~LVl~gD~l~~-~dl~~ll 204 (497)
+|+.-.. +.++... .-..+...|| -|.++-..... -.++.....+.|.++|.+.|.+.. .|+ .++
T Consensus 180 ~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~IL 258 (498)
T KOG2638|consen 180 DIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-NIL 258 (498)
T ss_pred eEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-HHH
Confidence 2321111 1233211 1111234575 45555443321 112211224678999999999974 566 566
Q ss_pred HHHHHcCCCeEEEEee
Q 010922 205 QSHVDRDADITISCAA 220 (497)
Q Consensus 205 ~~h~~~~a~~tl~~~~ 220 (497)
+...+.+.+..+=+..
T Consensus 259 n~~i~~~~ey~MEvTd 274 (498)
T KOG2638|consen 259 NHVINNNIEYLMEVTD 274 (498)
T ss_pred HHHhcCCCceEEEecc
Confidence 7667777766665554
No 266
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=94.74 E-value=0.49 Score=40.52 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=64.1
Q ss_pred cccccCcccchhHhHHHHHhcC--CcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~G--I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
++|..|.++++.++++.+.+.+ ..+++|+.+...+...+.+.+.. .. ... +..+.... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~--~~~---~~~~~~~~---------~~g~~ 66 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYA-KK--DPR---VIRVINEE---------NQGLA 66 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHH-hc--CCC---eEEEEecC---------CCChH
Confidence 4677777789999999999987 77899998877666666564322 11 001 22222111 15889
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHH
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDF 203 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~l 203 (497)
.++..+..... .+.++++.+|.++..++-..
T Consensus 67 ~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~ 97 (156)
T cd00761 67 AARNAGLKAAR------GEYILFLDADDLLLPDWLER 97 (156)
T ss_pred HHHHHHHHHhc------CCEEEEECCCCccCccHHHH
Confidence 99988876663 47899999999998775444
No 267
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=91.57 E-value=0.8 Score=42.94 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=56.4
Q ss_pred cchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHh
Q 010922 97 RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 176 (497)
Q Consensus 97 ~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i 176 (497)
+||+++++.+..+++++++|+++. +.+.+++. .++ ++++.... .|...+++.+...+
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~--------~~~---v~~i~~~~----------~G~~~si~~al~~~ 87 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAAR--------NLG---APVLRDPG----------PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH--------hcC---CEEEecCC----------CCHHHHHHHHHHHh
Confidence 599999999999988889888874 33333331 122 34443211 28899999988766
Q ss_pred hhhccCCCCcEEEEcCCee--eccCHHHHHHHH
Q 010922 177 EDAKNRNIENVAILCGDHL--YRMDYMDFIQSH 207 (497)
Q Consensus 177 ~~~~~~~~e~~LVl~gD~l--~~~dl~~ll~~h 207 (497)
.. ..+.++++.||+= ....+..+++..
T Consensus 88 ~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 88 RE----PGGAVLILMADLPLLTPRELKRLLAAA 116 (195)
T ss_pred hc----cCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 41 2357999999984 345677777755
No 268
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.50 E-value=2.7 Score=36.72 Aligned_cols=111 Identities=11% Similarity=0.141 Sum_probs=69.7
Q ss_pred cccccCcccchhHhHHHHHhc--CCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~--GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
++|.-|++..|...|+.+.+. ...+|+|+-....+...+.+ +.+... . ..++++...+. .|-+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~-~~~~~~--~---~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEIL-EEYAES--D---PNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHH-HHHHCC--S---TTEEEEEHCCC---------SHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccc-cccccc--c---ccccccccccc---------cccc
Confidence 467778877899999988876 44577777665544444444 233221 1 12566653322 4788
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCeEEEEee
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISCAA 220 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~~~ 220 (497)
.++..+..... .+.++++..|.++..+ +..+++.+.+.+.++.+....
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 88888876665 4699999999999877 678888877767665544433
No 269
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=90.59 E-value=0.51 Score=50.16 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=21.2
Q ss_pred eEeeceEECCCCEEc-ceEEeeeEEcCCcEECCCCEEcceEE
Q 010922 372 CRIKDAIISHGCFLR-ECTVEHSIVGERSRLDYGVELKDTVM 412 (497)
Q Consensus 372 ~~i~~s~I~~~~~i~-~~~v~~svIg~~~~i~~~~~i~~s~i 412 (497)
+.|.+|++..++.++ ++.|+||.|+.+++||++|.|.+.-+
T Consensus 280 ~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~ 321 (414)
T PF07959_consen 280 SCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDI 321 (414)
T ss_pred eeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcc
Confidence 344455555555555 24455555555555555555555433
No 270
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=80.36 E-value=17 Score=32.79 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=64.6
Q ss_pred cccccCcccchhHhHHHHHhc----CCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccC
Q 010922 89 AVPVAGCYRLIDIPMSNCINS----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 164 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~----GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~G 164 (497)
++|..+.+..|...|+.+.+. ...+|+|+-+...+...+.+. .+.. .+. .+.++..... .|
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~~~---~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-ELAA---RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HHHH---hCC--CeEEEEccCC---------CC
Confidence 356666656777788887775 356777776554433333332 2211 111 1344443332 47
Q ss_pred hHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCeEEEE
Q 010922 165 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 218 (497)
Q Consensus 165 Ta~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~ 218 (497)
-+.++..+..... .+.++++.+|.....+ +..+++...+++.++.+..
T Consensus 67 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 67 KGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred ccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 7888877765554 3789999999877655 6677776555565554433
No 271
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=79.17 E-value=19 Score=34.17 Aligned_cols=106 Identities=10% Similarity=0.107 Sum_probs=63.2
Q ss_pred cccccCcccchhHhHHHHHhcCC----cEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccC
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 164 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI----~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~G 164 (497)
++|.-|.+..|...++.+.+... -+|+|+-+...+...+.+. .+... . ..+.++.... .|
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~-~~~~~---~--~~v~~i~~~~----------~~ 68 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ-EYAAK---D--PRIRLIDNPK----------RI 68 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH-HHHhc---C--CeEEEEeCCC----------CC
Confidence 45666776688888888876544 3677776655554444443 22111 1 1255554321 24
Q ss_pred hHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCeEE
Q 010922 165 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 216 (497)
Q Consensus 165 Ta~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~tl 216 (497)
-+.++..+....+ .+.++++.+|.+...+ +..+++.+.+.+.++..
T Consensus 69 ~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 69 QSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred chHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 5566666655443 4789999999988665 56777666555554443
No 272
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=74.74 E-value=39 Score=31.81 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=60.9
Q ss_pred cccccCcc-cchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChHH
Q 010922 89 AVPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTAD 167 (497)
Q Consensus 89 LlPI~g~p-~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa~ 167 (497)
++|.-|.+ ..|...|+.+.+..-.+|+||.....+...+.+.+.. ... .+.++.... .|-+.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~-----~~~--~~~v~~~~~----------~g~~~ 67 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTV-----KYG--GIFVITVPH----------PGKRR 67 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhc-----cCC--cEEEEecCC----------CChHH
Confidence 46666775 6888999988776556888887766655555542211 111 144443221 36677
Q ss_pred HHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHH
Q 010922 168 AVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 208 (497)
Q Consensus 168 aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~ 208 (497)
++..+..... .+.++++.+|.....+ +..+++...
T Consensus 68 a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 68 ALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 7766654443 5889999999999877 455555544
No 273
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=74.30 E-value=48 Score=28.78 Aligned_cols=97 Identities=7% Similarity=0.066 Sum_probs=61.3
Q ss_pred cccccCcccchhHhHHHHHhc--CCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~--GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
++|.-+++.++...++.+.+. ...+|+|+-....+...+.+.+.+ . .++++..... .|.+
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~-~--------~~~~~~~~~~---------~g~~ 63 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF-P--------EVRLIRNGEN---------LGFG 63 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC-C--------CeEEEecCCC---------cChH
Confidence 467777777899999998775 344777766655444444443211 1 1444432211 5888
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHH
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 209 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~ 209 (497)
.++..+..... .+.++++..|..+..+ +..+++...+
T Consensus 64 ~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~ 101 (166)
T cd04186 64 AGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQ 101 (166)
T ss_pred HHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHh
Confidence 88888776553 5789999999988766 4555555444
No 274
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=72.61 E-value=42 Score=31.27 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=62.3
Q ss_pred cccccCcccchhHhHHHHHhcC---CcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccCh
Q 010922 89 AVPVAGCYRLIDIPMSNCINSG---INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 165 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~G---I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GT 165 (497)
++|.-+.+..|...++.+.+.- --+|+||-....+...+.+ +.|... .. .+.++..... .|-
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~-~~~~~~---~~--~i~~~~~~~n---------~G~ 66 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIV-RELAKE---YP--RVRLIVRPGK---------RGL 66 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHH-HHHHHh---CC--ceEEEecCCC---------CCh
Confidence 4677777667778887776542 2367666554433333333 222111 11 1444433222 588
Q ss_pred HHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCeEEE
Q 010922 166 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 217 (497)
Q Consensus 166 a~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~tl~ 217 (497)
+.|+..+..... .+.++++.+|.....+ +..+++...+.+.++...
T Consensus 67 ~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 67 GSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred HHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 888887765553 3788899999877654 567777655555555443
No 275
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=69.87 E-value=51 Score=28.39 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=59.5
Q ss_pred cccccCcccchhHhHHHHHhcC--CcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~G--I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
.+|.-+.+..|...|+.+.+.. .-+++|+-....+...+.+. .+.... . ..+.++..... .|-+
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~-~~~~~~---~-~~~~~~~~~~~---------~g~~ 67 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILE-ELAALY---I-RRVLVVRDKEN---------GGKA 67 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHH-HHhccc---c-ceEEEEEeccc---------CCch
Confidence 4677787778888898888764 34677776554443333342 221110 0 11233322221 4778
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHH
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 209 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~ 209 (497)
.++..+..... .+.++++.+|.+...+ +..++..+.+
T Consensus 68 ~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 68 GALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred HHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhcc
Confidence 88877765553 4789999999988766 4555355443
No 276
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=67.67 E-value=51 Score=30.62 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=62.8
Q ss_pred cccccCcccchhHhHHHHHhc------CCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccc
Q 010922 89 AVPVAGCYRLIDIPMSNCINS------GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 162 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~------GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~ 162 (497)
++|.-|....|...++.+.+. .--+|+|+-+...+...+.+ +.+.. .++. .+.++.....
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~-~~~~~---~~~~-~i~~i~~~~n--------- 67 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVA-RKLAR---KNPA-LIRVLTLPKN--------- 67 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHH-HHHHH---hCCC-cEEEEEcccC---------
Confidence 356666645666667666553 23367666554433332323 22211 1111 1344443222
Q ss_pred cChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCeEEEE
Q 010922 163 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 218 (497)
Q Consensus 163 ~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~ 218 (497)
.|-+.|+..+..... .+.++++.+|..+..+ +..+++...+.+.++.+..
T Consensus 68 ~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 68 RGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 588889988876554 4789999999988664 6777776555666655543
No 277
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=66.17 E-value=81 Score=30.11 Aligned_cols=110 Identities=12% Similarity=-0.009 Sum_probs=61.7
Q ss_pred cccccCcccchhHhHHHHHhcCCc----EEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccC
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGIN----KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 164 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI~----~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~G 164 (497)
++|.-|....|...++.+.+.-.. +|+||.....+.-.+.+ +.+ ..... ..+.++.... ..|
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~-~~~-~~~~~---~~i~~~~~~~---------~~G 71 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAA-RAL-RLPSI---FRVVVVPPSQ---------PRT 71 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHH-HHh-ccCCC---eeEEEecCCC---------CCc
Confidence 456666655777888887764321 56666554433333333 222 11001 1133332211 147
Q ss_pred hHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCeEEEE
Q 010922 165 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 218 (497)
Q Consensus 165 Ta~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~tl~~ 218 (497)
-+.|+..+..... .+.++++.+|.....+ +..+++.+.+.+.++.++.
T Consensus 72 ~~~a~n~g~~~a~------gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 72 KPKACNYALAFAR------GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred hHHHHHHHHHhcC------CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 7888887765543 4789999999988776 4577776655445555444
No 278
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=64.46 E-value=97 Score=29.48 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=59.0
Q ss_pred ccccccCcccchhHhHHHHHhcCC----cEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCcccc
Q 010922 88 PAVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 163 (497)
Q Consensus 88 ~LlPI~g~p~LId~~L~~l~~~GI----~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~ 163 (497)
-++|..|....|...|+.+.+... -+|+|+.....+...+.+ +.+... .+.++..... .
T Consensus 33 Vvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~-~~~~~~-------~v~~i~~~~~---------~ 95 (251)
T cd06439 33 IIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIA-REYADK-------GVKLLRFPER---------R 95 (251)
T ss_pred EEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHH-HHHhhC-------cEEEEEcCCC---------C
Confidence 566777775677777777665422 257777665444444434 223111 1455443221 4
Q ss_pred ChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHH
Q 010922 164 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 208 (497)
Q Consensus 164 GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~ 208 (497)
|-+.++..+..... .+.++++.+|.+...+ +..+++...
T Consensus 96 g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 96 GKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred ChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 77888877776554 3789999999998765 566666553
No 279
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=61.41 E-value=63 Score=29.05 Aligned_cols=106 Identities=11% Similarity=-0.018 Sum_probs=58.3
Q ss_pred cccccCcccchhHhHHHHHhc-----CCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCcccc
Q 010922 89 AVPVAGCYRLIDIPMSNCINS-----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 163 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~-----GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~ 163 (497)
++|.-+.+..|...++.+.+. ..-+|+|+-+...+...+.+ +.+... .. .+.++...+. .
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~-~~~~~~---~~--~i~~i~~~~n---------~ 66 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEIL-RELAAR---DP--RVKVIRLSRN---------F 66 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHH-HHHHhh---CC--CEEEEEecCC---------C
Confidence 355656644555555554332 22377777665444333333 222111 11 2455543322 4
Q ss_pred ChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCeEE
Q 010922 164 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 216 (497)
Q Consensus 164 GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~tl 216 (497)
|.+.|+..+..... .+.++++.+|..+..+ +..+++. .+.+.++.+
T Consensus 67 G~~~a~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~ 113 (181)
T cd04187 67 GQQAALLAGLDHAR------GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVY 113 (181)
T ss_pred CcHHHHHHHHHhcC------CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEE
Confidence 88888887765543 4789999999988665 5666665 445555443
No 280
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=60.33 E-value=14 Score=43.48 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=16.0
Q ss_pred eEeCCCcE-eeceEEcCCCEECCCcEEcC
Q 010922 435 IGVGRNTK-IRNCIIDKNVKIGKDVVIVN 462 (497)
Q Consensus 435 ~~Ig~~~~-i~~~iI~~~~~Ig~~~~i~~ 462 (497)
+.+|+++. |+||.|+.+.+||.+++|.+
T Consensus 343 ~s~~~~s~~vE~s~l~~~~~ig~~~Iisg 371 (974)
T PRK13412 343 LTAENATLWIENSHVGEGWKLASRSIITG 371 (974)
T ss_pred cccCCCeEEEEeeEecCCeEEcCCcEEec
Confidence 55555533 55566666666666666554
No 281
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=59.81 E-value=1e+02 Score=30.61 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=61.0
Q ss_pred cccccCcc-cchhHhHHHHHhcC----CcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCcccc
Q 010922 89 AVPVAGCY-RLIDIPMSNCINSG----INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 163 (497)
Q Consensus 89 LlPI~g~p-~LId~~L~~l~~~G----I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~ 163 (497)
.+|.-|.. ..|...|+.+.+.- ..+|+||-+...+...+.+.+.+... .+ ..+.++..... .
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~--~~--~~v~vi~~~~n---------~ 69 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK--YL--PKVKVLRLKKR---------E 69 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh--cC--CcEEEEEcCCC---------C
Confidence 35666775 57888888877542 13787776554433323332211011 11 12666654332 4
Q ss_pred ChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCC
Q 010922 164 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 212 (497)
Q Consensus 164 GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a 212 (497)
|-+.|.-.+..... .+.++++++|.....+ +..+++...+...
T Consensus 70 G~~~a~N~g~~~A~------gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAAT------GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHcc------CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 77777766665443 4889999999988665 6777776655443
No 282
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=58.96 E-value=79 Score=30.29 Aligned_cols=49 Identities=20% Similarity=0.094 Sum_probs=34.5
Q ss_pred cChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCeEEE
Q 010922 163 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 217 (497)
Q Consensus 163 ~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~tl~ 217 (497)
.|-+.|+..+..... .+.++++.+|..++.+ +..+++...+.++++...
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 477888877765443 4789999999988664 567777666666666543
No 283
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=57.08 E-value=1.5e+02 Score=26.77 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=59.8
Q ss_pred cccccCcccchhHhHHHHHhcCC----cEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccC
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 164 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI----~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~G 164 (497)
++|.-|....|...|+.+.+... -+|+|+.....+...+.+ +.+ +.. +....... ..|
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~-~~~-------~~~-~~~~~~~~---------~~g 63 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVA-RAA-------GAT-VLERHDPE---------RRG 63 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHH-HHc-------CCe-EEEeCCCC---------CCC
Confidence 56777776678888888876433 357667655544333333 222 111 22111111 147
Q ss_pred hHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCH-HHHHHHHHHcCCCe
Q 010922 165 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADI 214 (497)
Q Consensus 165 Ta~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl-~~ll~~h~~~~a~~ 214 (497)
-+.++..+...... .....+-++++.+|.....+. ..+++.+ ..+.++
T Consensus 64 k~~aln~g~~~a~~-~~~~~d~v~~~DaD~~~~p~~l~~l~~~~-~~~~~~ 112 (183)
T cd06438 64 KGYALDFGFRHLLN-LADDPDAVVVFDADNLVDPNALEELNARF-AAGARV 112 (183)
T ss_pred HHHHHHHHHHHHHh-cCCCCCEEEEEcCCCCCChhHHHHHHHHH-hhCCCe
Confidence 78888877665520 011347799999999998775 4555544 344543
No 284
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=55.07 E-value=1.6e+02 Score=26.62 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=56.8
Q ss_pred cccccCcc--cchhHhHHHHHhcC--CcEEEEEcccC-hhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCcccc
Q 010922 89 AVPVAGCY--RLIDIPMSNCINSG--INKIFVLTQFN-SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 163 (497)
Q Consensus 89 LlPI~g~p--~LId~~L~~l~~~G--I~~I~Iv~~~~-~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~ 163 (497)
++|+.+.. ..|...|+.+.+.- -.+|+||-... .+...+.+ +.|... ++ ++++..... .
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~-~~~~~~---~~---i~~i~~~~n---------~ 66 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVL-EEFKRK---LP---LKVVPLEKN---------R 66 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHH-HHHHhc---CC---eEEEEcCcc---------c
Confidence 46776652 27888888887643 24666665543 33333333 233111 12 455543222 4
Q ss_pred ChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHH
Q 010922 164 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 208 (497)
Q Consensus 164 GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~ 208 (497)
|.+.+.-.+..... .+.++++.+|.+...+ +..+++...
T Consensus 67 G~~~a~N~g~~~a~------gd~i~~lD~Dd~~~~~~l~~~~~~~~ 106 (201)
T cd04195 67 GLGKALNEGLKHCT------YDWVARMDTDDISLPDRFEKQLDFIE 106 (201)
T ss_pred cHHHHHHHHHHhcC------CCEEEEeCCccccCcHHHHHHHHHHH
Confidence 88888877765442 4789999999988765 455566543
No 285
>PRK10073 putative glycosyl transferase; Provisional
Probab=54.27 E-value=92 Score=31.84 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=61.5
Q ss_pred cccccCcccchhHhHHHHHhcCCc--EEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI~--~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
.+|+-|....|...|+.+.+.-.. +|+||-....+.-.+.+ +.|... . ..+.++... . .|-+
T Consensus 11 IIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~-~~~~~~---~--~~i~vi~~~-n---------~G~~ 74 (328)
T PRK10073 11 IIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIA-KHYAEN---Y--PHVRLLHQA-N---------AGVS 74 (328)
T ss_pred EEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHH-HHHHhh---C--CCEEEEECC-C---------CChH
Confidence 456666656888888888765333 56555443322222222 223111 1 125665421 1 4777
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCeEEE
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 217 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~tl~ 217 (497)
.|.-.+..... .+.++++.+|-+...+ +..+++...+.+.++.+.
T Consensus 75 ~arN~gl~~a~------g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 75 VARNTGLAVAT------GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred HHHHHHHHhCC------CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 77766655443 4789999999888766 556666665566666543
No 286
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.71 E-value=1.2e+02 Score=28.04 Aligned_cols=106 Identities=5% Similarity=0.035 Sum_probs=58.5
Q ss_pred cccccCcccchhHhHHHHHhcCC----cEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccC
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 164 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI----~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~G 164 (497)
++|..|.+..|...|+.+...-. -+|+||-....+...+.+. +... .....+.++..... ...|
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~--~~~~---~~~~~v~~~~~~~~-------~~~g 69 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE--FAAA---KPNFQLKILNNSRV-------SISG 69 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH--HHHh---CCCcceEEeeccCc-------ccch
Confidence 46777776778888888765422 3666665544333333332 1000 01112555543321 0146
Q ss_pred hHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCC
Q 010922 165 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 212 (497)
Q Consensus 165 Ta~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a 212 (497)
-+.++..+.... ..+-++++.+|.+...+ +..+++.+.+.+.
T Consensus 70 ~~~a~n~g~~~~------~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 70 KKNALTTAIKAA------KGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred hHHHHHHHHHHh------cCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 666666655433 24789999999988765 4666665544443
No 287
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.48 E-value=1.5e+02 Score=26.49 Aligned_cols=97 Identities=9% Similarity=0.107 Sum_probs=56.9
Q ss_pred cccccCcccchhHhHHHHHhcCCc--EEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI~--~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
.+|.-+.+..|+..|+.+.+.... +|+|+-+...+...+.+. .+... .+.+... .. .|-+
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~-~~~~~-------~~~~~~~-~~---------~g~~ 64 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIK-KYEDK-------ITYWISE-PD---------KGIY 64 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHH-HhHhh-------cEEEEec-CC---------cCHH
Confidence 356666656888888888765554 566664443344444442 22111 1233322 11 4788
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHH
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 209 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~ 209 (497)
.++..+....+ .+.++++.+|.....+ +..+++....
T Consensus 65 ~a~n~~~~~a~------~~~v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 65 DAMNKGIALAT------GDIIGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred HHHHHHHHHcC------CCEEEEeCCCcccCchHHHHHHHHHHh
Confidence 88877765543 4789999999887654 6666644433
No 288
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=52.58 E-value=1e+02 Score=32.79 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=60.2
Q ss_pred ccccccCcccchhHhHHHHHhcCC--cEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccCh
Q 010922 88 PAVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 165 (497)
Q Consensus 88 ~LlPI~g~p~LId~~L~~l~~~GI--~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GT 165 (497)
-++|..|....|...++.+.+... -+|+|+.....+...+.+. ++... +. .++++..... .|-
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~-~~~~~---~~--~v~vv~~~~n---------~Gk 143 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLD-ALLAE---DP--RLRVIHLAHN---------QGK 143 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHH-HHHHh---CC--CEEEEEeCCC---------CCH
Confidence 577888886677888888776432 2677776544433333232 11111 11 2555543222 477
Q ss_pred HHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHH
Q 010922 166 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 209 (497)
Q Consensus 166 a~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~ 209 (497)
+.|+..+.... ..|.++++.+|.+.+.| +..+++.+.+
T Consensus 144 a~AlN~gl~~a------~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 144 AIALRMGAAAA------RSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred HHHHHHHHHhC------CCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 88887776443 35889999999998776 4556655543
No 289
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=50.42 E-value=1.7e+02 Score=26.51 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=54.0
Q ss_pred ccccCcc-cchhHhHHHHHhcCCc--EEEEEcccChh-HHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccCh
Q 010922 90 VPVAGCY-RLIDIPMSNCINSGIN--KIFVLTQFNSA-SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 165 (497)
Q Consensus 90 lPI~g~p-~LId~~L~~l~~~GI~--~I~Iv~~~~~~-~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GT 165 (497)
+|.-+.. ..+...++.+.+.-.. +|+|+-..... .+...+ +.+.... ..+.++..... .|-
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~-~~~~~~~-----~~~~~~~~~~~---------~g~ 71 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVL-KKYAAQD-----PRIKVVFREEN---------GGI 71 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHH-HHHHhcC-----CCEEEEEcccC---------CCH
Confidence 5555554 5677777777664332 67666444322 333333 2221111 11444433221 477
Q ss_pred HHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHH
Q 010922 166 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 207 (497)
Q Consensus 166 a~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h 207 (497)
+.++-.+..... .+.++++..|.....+ +..+++.+
T Consensus 72 ~~a~n~g~~~a~------~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 72 SAATNSALELAT------GEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHHHHhhc------CCEEEEECCCCcCChHHHHHHHHHH
Confidence 788776665443 4789999999988765 56677665
No 290
>PRK11204 N-glycosyltransferase; Provisional
Probab=49.92 E-value=1.4e+02 Score=31.19 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=58.3
Q ss_pred cccccCcccchhHhHHHHHhcCC--cEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI--~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
++|.-|....|...++.+.+... -+|+|+-....+...+.+. .+... +. .++++..... .|-+
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~-~~~~~---~~--~v~~i~~~~n---------~Gka 123 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILD-RLAAQ---IP--RLRVIHLAEN---------QGKA 123 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHH-HHHHh---CC--cEEEEEcCCC---------CCHH
Confidence 55666665677788888766432 2676665544333323221 11111 11 2555542222 4778
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHH
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 209 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~ 209 (497)
+|+..+....+ .+.++++.+|.+...| +..+++...+
T Consensus 124 ~aln~g~~~a~------~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 124 NALNTGAAAAR------SEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred HHHHHHHHHcC------CCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 88887765543 5889999999988776 5666665543
No 291
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=46.56 E-value=18 Score=38.71 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=49.6
Q ss_pred ccccCCCceEEEEecCCCCCcccCCCCCCCCccccccCc--ccchhHhHHHHHh----------cCCc-EEEEEccc-Ch
Q 010922 57 DEKVKPGVAYAVMTSKHPNEVMTLAPPRAATPAVPVAGC--YRLIDIPMSNCIN----------SGIN-KIFVLTQF-NS 122 (497)
Q Consensus 57 ~~~~~~~~m~aVIlaaG~G~Rl~Plt~~~PK~LlPI~g~--p~LId~~L~~l~~----------~GI~-~I~Iv~~~-~~ 122 (497)
.+.+......++++|+|.||||. ..-||.++|++-. ..++++..+.+.. .|.+ .-+|.|.. -.
T Consensus 90 ~~~i~~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~ 166 (477)
T KOG2388|consen 90 LRLIAEGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTH 166 (477)
T ss_pred hhhhhcCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCcc
Confidence 44566778899999999999965 5689999999843 1488877766432 2322 22455553 34
Q ss_pred hHHHHHHHh-cccCC
Q 010922 123 ASLNRHIAR-TYFGN 136 (497)
Q Consensus 123 ~~l~~~l~~-~y~~~ 136 (497)
+.-.+|... .||+-
T Consensus 167 e~T~~~f~~~~~FGl 181 (477)
T KOG2388|consen 167 EATLEYFESHKYFGL 181 (477)
T ss_pred HHhHhHHhhcCCCCC
Confidence 555566653 35554
No 292
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=44.81 E-value=1.6e+02 Score=28.03 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=59.5
Q ss_pred eEEEEec---CCCCCcccCCCC-CCCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCccc
Q 010922 65 AYAVMTS---KHPNEVMTLAPP-RAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 140 (497)
Q Consensus 65 m~aVIla---aG~G~Rl~Plt~-~~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~ 140 (497)
|.+||.- ++..|||.|.-. +--+-++ .-|+..++..+... +.+|.||+....- -. +
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~-----laML~dvi~Al~~~-~~~i~Vvtpde~~--~~------------~ 60 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA-----LAMLVDVLGALAGV-LGEITVVTPDEEV--LV------------P 60 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH-----HHHHHHHHHHhhhh-cCCceEEcCChHh--hh------------h
Confidence 4556653 356688877522 1111111 13666777777654 7899999975421 11 1
Q ss_pred CCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCe--eeccCHHHHHHHH
Q 010922 141 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSH 207 (497)
Q Consensus 141 ~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~--l~~~dl~~ll~~h 207 (497)
+.. .+|+... +.-.|+.++.+.+.. . ++++|+.+|+ +...+++.+++..
T Consensus 61 a~~-~~vl~d~------------dLN~Ai~aa~~~~~~----p-~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 61 ATK-LEVLADP------------DLNTAINAALDEIPL----P-SEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred ccc-ceeeecc------------chHHHHHHHHhhCCC----C-cceEEEecccccCCHHHHHHHHHhc
Confidence 111 1444431 234577777776652 2 6799999997 4466777777653
No 293
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=43.82 E-value=60 Score=26.89 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=4.8
Q ss_pred cEECCCCEEcce
Q 010922 399 SRLDYGVELKDT 410 (497)
Q Consensus 399 ~~i~~~~~i~~s 410 (497)
..|+.++.++..
T Consensus 37 v~i~~~~~v~G~ 48 (101)
T PF04519_consen 37 VKIGGNGEVKGD 48 (101)
T ss_pred EEEcCCCEEEEE
Confidence 334444444333
No 294
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=40.72 E-value=2.9e+02 Score=25.24 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=50.1
Q ss_pred cccccCcccchhHhHHHHHhcC--CcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~G--I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
++|+-|...-|...|+.+.+.- --+|+||.....+.-.+.+ +.+.. ++....+.++...... | ..+.+
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~-~~~~~---~~~~~~~~~~~~~~~~---g---~~~~~ 75 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVV-RKLIA---KYPNVDARLLIGGEKV---G---INPKV 75 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHH-HHHHH---HCCCCcEEEEecCCcC---C---CCHhH
Confidence 4566666556777787776532 2367666654433222222 11101 1111124444333221 1 01223
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHH
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQS 206 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~ 206 (497)
.++..+.... ..+-++++.+|.....+ +..+++.
T Consensus 76 ~~~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~l~~~ 110 (196)
T cd02520 76 NNLIKGYEEA------RYDILVISDSDISVPPDYLRRMVAP 110 (196)
T ss_pred HHHHHHHHhC------CCCEEEEECCCceEChhHHHHHHHH
Confidence 4444443322 24789999999988765 4555554
No 295
>PRK10018 putative glycosyl transferase; Provisional
Probab=39.95 E-value=3.9e+02 Score=26.59 Aligned_cols=96 Identities=9% Similarity=0.154 Sum_probs=55.5
Q ss_pred ccccCcccchhHhHHHHHhcCCc--EEEEEcccCh--hHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccCh
Q 010922 90 VPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNS--ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 165 (497)
Q Consensus 90 lPI~g~p~LId~~L~~l~~~GI~--~I~Iv~~~~~--~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GT 165 (497)
+|.-|....|...|+.+.+.-.. +|+||-.... +.+.+++. .+ ....+.++..... .|.
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~-~~-------~~~ri~~i~~~~n---------~G~ 73 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVT-AL-------NDPRITYIHNDIN---------SGA 73 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHH-Hc-------CCCCEEEEECCCC---------CCH
Confidence 45556655677788777664333 5655544332 23334432 21 1123566543322 488
Q ss_pred HHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHH
Q 010922 166 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHV 208 (497)
Q Consensus 166 a~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~ 208 (497)
+.|.-.+..... .+.++++.+|.++..+ +..+++...
T Consensus 74 ~~a~N~gi~~a~------g~~I~~lDaDD~~~p~~l~~~~~~~~ 111 (279)
T PRK10018 74 CAVRNQAIMLAQ------GEYITGIDDDDEWTPNRLSVFLAHKQ 111 (279)
T ss_pred HHHHHHHHHHcC------CCEEEEECCCCCCCccHHHHHHHHHH
Confidence 887766665443 4789999999988776 566666543
No 296
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=36.30 E-value=3.4e+02 Score=25.58 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=56.4
Q ss_pred cccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChHHH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 168 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa~a 168 (497)
++|.-|....|...|+.+... .++|+||-+...+...+-+ +.+ + +.++.. . ..|-+.+
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~-~~~-------~---~~v~~~-~---------~~g~~~~ 62 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIA-KEY-------G---AKVYQR-W---------WDGFGAQ 62 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHH-HHc-------C---CEEEEC-C---------CCChHHH
Confidence 455666655677777777653 3688887765544333333 322 2 233322 1 1477777
Q ss_pred HHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHHHHHcC
Q 010922 169 VRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRD 211 (497)
Q Consensus 169 L~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~h~~~~ 211 (497)
...+..... .+-++++.+|.+...++.+.+....+.+
T Consensus 63 ~n~~~~~a~------~d~vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 63 RNFALELAT------NDWVLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred HHHHHHhCC------CCEEEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 766665443 4689999999998877655444444443
No 297
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=36.12 E-value=4.5e+02 Score=27.27 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=63.0
Q ss_pred cccccCcccchhHhHHHHHhcCC---cEEEEEcccChhH---HHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccc
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGI---NKIFVLTQFNSAS---LNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 162 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI---~~I~Iv~~~~~~~---l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~ 162 (497)
.+|.-|....|...++.+.+... -+|+||-+...+. +.+.+.+.+ .. ...++++.....+ ..|
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~-~~-----~~~i~vi~~~~~~----~g~- 113 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAY-GR-----GDRLTVVSGQPLP----PGW- 113 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhc-CC-----CCcEEEecCCCCC----CCC-
Confidence 55666665678888888876433 3677776544332 322222221 00 0125666432221 112
Q ss_pred cChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCCCe
Q 010922 163 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADI 214 (497)
Q Consensus 163 ~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a~~ 214 (497)
.|-+.|+.++.....+. ....+-++++.+|.....+ +..+++...+.+.++
T Consensus 114 ~Gk~~A~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred cchHHHHHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 36666777765544310 0114789999999988765 577777766655544
No 298
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=33.80 E-value=3.6e+02 Score=24.37 Aligned_cols=98 Identities=7% Similarity=0.099 Sum_probs=54.6
Q ss_pred cccccCcccchhHhHHHHHhcCC--cEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI--~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
++|.-|.+..|...|+.+.+.-. -+|+|+-....+...+.+ +.+.. .++ ..+.++..... .|-+
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~-~~~~~---~~~-~~~~~~~~~~~---------~G~~ 68 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEII-KEYID---KDP-FIIILIRNGKN---------LGVA 68 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHH-HHHHh---cCC-ceEEEEeCCCC---------ccHH
Confidence 46777776678888888776432 256666543333222222 22211 111 11333332222 4777
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHH
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQS 206 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~ 206 (497)
.++..+.... ..+.++++..|.++..+ +..+++.
T Consensus 69 ~~~n~g~~~~------~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 69 RNFESLLQAA------DGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHhC------CCCEEEEECCCcccChhHHHHHHHH
Confidence 7776664332 35789999999888766 6677665
No 299
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=33.63 E-value=65 Score=30.11 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=50.8
Q ss_pred cccccCcccchhHhHHHHHhc--CCcEEEEEcccChhH---HHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCcccc
Q 010922 89 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSAS---LNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 163 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~--GI~~I~Iv~~~~~~~---l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~ 163 (497)
++|..|.+..|...|+.+... .--+|+|+.....+. ..+.+.+.+ +...+.++.....+ ...
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~-------~~~~v~vi~~~~~~------g~~ 72 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY-------PRVRVRVIRRPRNP------GPG 72 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT-------GG-GEEEEE----H------HHH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc-------CCCceEEeecCCCC------Ccc
Confidence 577878766888888887753 223666766544332 222332222 21125666543211 012
Q ss_pred ChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHH
Q 010922 164 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 207 (497)
Q Consensus 164 GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h 207 (497)
+.+.++..+..... .+.++++..|.+...+ +..+++.+
T Consensus 73 ~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 73 GKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp HHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHH
Confidence 45667766665553 5789999999999776 45666666
No 300
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=33.15 E-value=3.4e+02 Score=23.92 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=54.3
Q ss_pred cccccCcccchhHhHHHHHhc--CCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~--GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
++|.-|.+..+...|+.+.+. ...+|+|+-....+...+.+. .+.. .+....+.+...... .|.+
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~-~~~~---~~~~~~~~~~~~~~~---------~~~~ 68 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIE-EFKS---QFPIPIKHVWQEDEG---------FRKA 68 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHH-HHHh---hcCCceEEEEcCCcc---------hhHH
Confidence 467777767888888888764 233676665544443333332 2211 111112233222110 2455
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHH
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 207 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h 207 (497)
.++..+..... .+.++++.+|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAAK------GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHhc------CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 56655554433 4789999999988665 45555544
No 301
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=32.80 E-value=1.8e+02 Score=26.29 Aligned_cols=27 Identities=7% Similarity=0.196 Sum_probs=12.9
Q ss_pred eEeCCCcEeeceEEcCCCEECCCcEEc
Q 010922 435 IGVGRNTKIRNCIIDKNVKIGKDVVIV 461 (497)
Q Consensus 435 ~~Ig~~~~i~~~iI~~~~~Ig~~~~i~ 461 (497)
+.|...+++..-|=++.-.|.+++++.
T Consensus 91 Vei~~~g~v~GdI~~~~i~v~~Ga~f~ 117 (146)
T COG1664 91 VELYPGGRVIGDITTKEITVEEGAIFE 117 (146)
T ss_pred EEEcCCcEEeeeecccEEEEccCCEEE
Confidence 455555555444444444444444443
No 302
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=32.51 E-value=4e+02 Score=24.55 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=54.3
Q ss_pred cccccCcc-cchhHhHHHHHhcCCc----EEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCcccc
Q 010922 89 AVPVAGCY-RLIDIPMSNCINSGIN----KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 163 (497)
Q Consensus 89 LlPI~g~p-~LId~~L~~l~~~GI~----~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~ 163 (497)
.+|.-|.+ .++...++.+.+.-.. +|+|+-....+...+.+. .+ .. .+. +.++...... .
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~-~~--~~~---~~~~~~~~~~--------~ 70 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAA-EL-GV--EYG---YRYLTRPDNR--------H 70 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHH-Hh-hc--ccC---ceEEEeCCCC--------C
Confidence 45666652 3677888888765433 677776655555444443 22 11 111 2333322111 1
Q ss_pred ChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCH-HHHHHHHH
Q 010922 164 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHV 208 (497)
Q Consensus 164 GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl-~~ll~~h~ 208 (497)
+-+.++..+.... ..+.++++.+|.+...+. ..+++...
T Consensus 71 ~~~~~~n~~~~~a------~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (234)
T cd06421 71 AKAGNLNNALAHT------TGDFVAILDADHVPTPDFLRRTLGYFL 110 (234)
T ss_pred CcHHHHHHHHHhC------CCCEEEEEccccCcCccHHHHHHHHHh
Confidence 3455555555433 257899999999987764 45555443
No 303
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=31.50 E-value=62 Score=27.96 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.8
Q ss_pred CcccchhHhHHHHHhcCCcEEEEE
Q 010922 94 GCYRLIDIPMSNCINSGINKIFVL 117 (497)
Q Consensus 94 g~p~LId~~L~~l~~~GI~~I~Iv 117 (497)
+. |-++..++.|...|+++|+|+
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEE
Confidence 55 589999999999999998776
No 304
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=31.02 E-value=4.5e+02 Score=27.93 Aligned_cols=100 Identities=11% Similarity=0.066 Sum_probs=56.2
Q ss_pred cccccCcccchhHhHHHHHhcCC--c--EEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccC
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGI--N--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 164 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI--~--~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~G 164 (497)
++|.-|....|...++.+.+.-. + +|+|+-+...+...+.+. ++.. .++ .+.+...... .|
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~-~~~~---~~~--~v~v~~~~~~---------~G 118 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFC-RAQN---EFP--GLSLRYMNSD---------QG 118 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHH-HHHH---hCC--CeEEEEeCCC---------CC
Confidence 45666665677788888776432 2 466664443333222221 1101 111 1333221211 47
Q ss_pred hHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHH
Q 010922 165 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD 209 (497)
Q Consensus 165 Ta~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~ 209 (497)
-+.|+-.+..... .+.++++.+|.+.+.| +..+++.+.+
T Consensus 119 ka~AlN~gl~~s~------g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 119 KAKALNAAIYNSI------GKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred HHHHHHHHHHHcc------CCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 8888888775543 4789999999998766 5666666543
No 305
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=29.62 E-value=3.9e+02 Score=24.87 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=55.4
Q ss_pred cccccCcc-cchhHhHHHHHhcCC--cEEEEEcccChh-HH----HHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCc
Q 010922 89 AVPVAGCY-RLIDIPMSNCINSGI--NKIFVLTQFNSA-SL----NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKN 160 (497)
Q Consensus 89 LlPI~g~p-~LId~~L~~l~~~GI--~~I~Iv~~~~~~-~l----~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~ 160 (497)
++|.-|.+ .+|...++.+.+... -+|+||-+...+ .+ .+.. +.+ +. .+.++.....
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~-~~~-~~-------~i~~i~~~~~------- 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHC-AQL-GE-------RFRFFHVEPL------- 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHH-HHh-CC-------cEEEEEcCCC-------
Confidence 46777874 378888888877643 367666654432 22 2222 211 11 1344433222
Q ss_pred cccC-hHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHH
Q 010922 161 WFQG-TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSH 207 (497)
Q Consensus 161 ~~~G-Ta~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h 207 (497)
.| -++|+-.+..... ...+.++++..|.+...+ +..+++..
T Consensus 67 --~G~~~~a~n~g~~~a~----~~~d~i~~lD~D~~~~~~~l~~l~~~~ 109 (236)
T cd06435 67 --PGAKAGALNYALERTA----PDAEIIAVIDADYQVEPDWLKRLVPIF 109 (236)
T ss_pred --CCCchHHHHHHHHhcC----CCCCEEEEEcCCCCcCHHHHHHHHHHh
Confidence 24 3677776665442 124789999999988765 56666654
No 306
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=29.53 E-value=4.6e+02 Score=24.30 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=52.3
Q ss_pred ccccCcc-cchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChHHH
Q 010922 90 VPVAGCY-RLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADA 168 (497)
Q Consensus 90 lPI~g~p-~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa~a 168 (497)
+|.-+.. ..|...|+.+.+. ..+|+|+=+...+...... + + . ...+.++..... .|-+.|
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~-~-~--~-----~~~i~~i~~~~n---------~G~~~a 63 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRL-R-L--N-----SEKIELIHLGEN---------LGIAKA 63 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHh-h-c--c-----CCcEEEEECCCc---------eehHHh
Confidence 4444554 5777888887766 5566666443322222111 1 1 0 112555554322 477777
Q ss_pred HHHHHHHhhhhccCCCCcEEEEcCCeeeccCH-HHHH
Q 010922 169 VRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFI 204 (497)
Q Consensus 169 L~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl-~~ll 204 (497)
...+..... ..+.+.++++.+|.+...+. ..++
T Consensus 64 ~N~g~~~a~---~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 64 LNIGIKAAL---ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhHHHHHHH---hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 777665443 12357899999999987654 4553
No 307
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=29.09 E-value=4.4e+02 Score=26.89 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=32.9
Q ss_pred cChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeecc-CHHHHHHHHH---HcCCCeEEEE
Q 010922 163 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM-DYMDFIQSHV---DRDADITISC 218 (497)
Q Consensus 163 ~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~-dl~~ll~~h~---~~~a~~tl~~ 218 (497)
.|-+.|+..+...-. .+.++++.+|...+. ++..+++... +.+.++.+..
T Consensus 148 ~G~~~A~~~Gi~~a~------gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 148 KGKGGAVRIGMLASR------GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred CChHHHHHHHHHHcc------CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 588999888765432 478999999988765 4555655543 3455555543
No 308
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=28.79 E-value=4e+02 Score=27.53 Aligned_cols=101 Identities=10% Similarity=0.071 Sum_probs=54.7
Q ss_pred cccccCcccchhHhHHHHHhcCC--cEEEEEcccChh---HHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCcccc
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSA---SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 163 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI--~~I~Iv~~~~~~---~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~ 163 (497)
++|.-|..+.|...|+.+.+... -+|+++.....+ .+.+.+.+.| +...++++...+..+ | .
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~-------p~~~i~~v~~~~~~G-----~-~ 112 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF-------PDADIDLVIDARRHG-----P-N 112 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC-------CCCceEEEECCCCCC-----C-C
Confidence 67777776788888888776543 367665554332 2222232222 212255554332211 1 2
Q ss_pred ChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCH-HHHHHHHH
Q 010922 164 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHV 208 (497)
Q Consensus 164 GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl-~~ll~~h~ 208 (497)
+-..++.++.... ..|-++++.+|.....|. +.+++...
T Consensus 113 ~K~~~l~~~~~~a------~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 113 RKVSNLINMLPHA------RHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred hHHHHHHHHHHhc------cCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 3344554443222 358899999999887764 55555443
No 309
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.83 E-value=4.9e+02 Score=23.74 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=52.6
Q ss_pred cccccCcccchhHhHHHHHhcC--CcEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~G--I~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
++|.-|.+..|...|+.+.+.- -.+|+|+-+...+...+.+.+ .. +.++... .|-+
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~--------~~---~~~~~~~-----------~g~~ 61 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS--------AG---VVVISSP-----------KGRA 61 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc--------CC---eEEEeCC-----------cCHH
Confidence 4677777667778887776642 236666644433333344422 11 3333321 2556
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCH-HHHHHHHHHc
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDR 210 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl-~~ll~~h~~~ 210 (497)
.+.-.+..... .+.++++..|.....+. ..++....+.
T Consensus 62 ~a~n~g~~~a~------~~~i~~~D~D~~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 62 RQMNAGAAAAR------GDWLLFLHADTRLPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHHHHhcc------CCEEEEEcCCCCCChhHHHHHHHHhhcC
Confidence 66655554443 47899999999887654 4444444333
No 310
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.26 E-value=4e+02 Score=26.04 Aligned_cols=129 Identities=18% Similarity=0.160 Sum_probs=60.9
Q ss_pred CceEEEEecCCCCCcccC---CCCC--CCCccccccCcccchhHhHHHHHhcCCcEEEEEcccChhHHHHHHHhcccCCC
Q 010922 63 GVAYAVMTSKHPNEVMTL---APPR--AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 137 (497)
Q Consensus 63 ~~m~aVIlaaG~G~Rl~P---lt~~--~PK~LlPI~g~p~LId~~L~~l~~~GI~~I~Iv~~~~~~~l~~~l~~~y~~~g 137 (497)
...-+|..+.-.|+-..- +... .-++-+|+-. -..-.++.|...|+++|.|++.|..+ +++.+. .||..
T Consensus 70 a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~tt---~~~A~~~AL~alg~~RIalvTPY~~~-v~~~~~-~~l~~- 143 (239)
T TIGR02990 70 EELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVVT---PSSAAVDGLAALGVRRISLLTPYTPE-TSRPMA-QYFAV- 143 (239)
T ss_pred CCCCEEEEccchhheecCHHHHHHHHHhcCCCCCeeC---HHHHHHHHHHHcCCCEEEEECCCcHH-HHHHHH-HHHHh-
Confidence 466777777656554221 0000 0112233332 23456677888899999999999754 444443 33221
Q ss_pred cccCCCeEEEeeCccCCCCCCCccccChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCHHHHHHH
Q 010922 138 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 206 (497)
Q Consensus 138 ~~~~~~~VeIl~~~~~~~e~~~~~~~GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl~~ll~~ 206 (497)
.| ++|+....-..+++.....=+.+.++.+..... ...-+-++++|-.+--.++-+-++.
T Consensus 144 --~G---~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~----~~~aDAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 144 --RG---FEIVNFTCLGLTDDREMARISPDCIVEAALAAF----DPDADALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred --CC---cEEeeeeccCCCCCceeeecCHHHHHHHHHHhc----CCCCCEEEEeCCCchhHHHHHHHHH
Confidence 12 344322100000111111123444544432222 1234677777777666555444443
No 311
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=23.61 E-value=6.7e+02 Score=29.49 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=58.8
Q ss_pred cccccCccc-chhHhHHHHHhcCC--c--EEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCcccc
Q 010922 89 AVPVAGCYR-LIDIPMSNCINSGI--N--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ 163 (497)
Q Consensus 89 LlPI~g~p~-LId~~L~~l~~~GI--~--~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~ 163 (497)
++|.-|.+. ++...+..+.+..- + +|+|+-....+...+... + .+ ++++...... .
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~-~-------~~---v~yI~R~~n~--------~ 325 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQ-E-------VG---VKYIARPTHE--------H 325 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHH-H-------CC---cEEEEeCCCC--------c
Confidence 567778742 56667777655322 2 576665555555554442 2 12 4444321111 3
Q ss_pred ChHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCH-HHHHHHHHHcCCCeEEEE
Q 010922 164 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSHVDRDADITISC 218 (497)
Q Consensus 164 GTa~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl-~~ll~~h~~~~a~~tl~~ 218 (497)
+-++++-.+....+ .|.++++.+|++...|+ ..++..+.+. .++.++.
T Consensus 326 gKAGnLN~aL~~a~------GEyIavlDAD~ip~pdfL~~~V~~f~~d-P~VglVQ 374 (852)
T PRK11498 326 AKAGNINNALKYAK------GEFVAIFDCDHVPTRSFLQMTMGWFLKD-KKLAMMQ 374 (852)
T ss_pred chHHHHHHHHHhCC------CCEEEEECCCCCCChHHHHHHHHHHHhC-CCeEEEE
Confidence 56788877765543 58999999999987665 4455544433 3344433
No 312
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=22.73 E-value=5.1e+02 Score=26.85 Aligned_cols=106 Identities=12% Similarity=0.133 Sum_probs=66.3
Q ss_pred ccccccCccc-chhHhHHHHHhcCCc--EEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccC
Q 010922 88 PAVPVAGCYR-LIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 164 (497)
Q Consensus 88 ~LlPI~g~p~-LId~~L~~l~~~GI~--~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~G 164 (497)
-++|.-|.++ .++..++.+.+.... +|+++.....+...+.+.+.. . +++ ..+.++..... ..|
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~-~---~~~-~~~~~~~~~~~--------~~g 124 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELG-A---EYG-PNFRVIYPEKK--------NGG 124 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHH-h---hcC-cceEEEecccc--------Ccc
Confidence 4677778877 899999999887644 777777655555555553321 1 111 11333311011 147
Q ss_pred hHHHHHHHHHHhhhhccCCCCcEEEEcCCeeeccC-HHHHHHHHHHcCC
Q 010922 165 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDA 212 (497)
Q Consensus 165 Ta~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~d-l~~ll~~h~~~~a 212 (497)
-+.++..+..... .+-++++.+|++...| +..++..+.+...
T Consensus 125 K~~al~~~l~~~~------~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 125 KAGALNNGLKRAK------GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred chHHHHHHHhhcC------CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 7888888765443 4789999999998766 5677776655433
No 313
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.35 E-value=6.1e+02 Score=22.85 Aligned_cols=100 Identities=9% Similarity=0.023 Sum_probs=55.6
Q ss_pred cccccCcccchhHhHHHHHhcCC--cEEEEEcccChhHHHHHHHhcccCCCcccCCCeEEEeeCccCCCCCCCccccChH
Q 010922 89 AVPVAGCYRLIDIPMSNCINSGI--NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 166 (497)
Q Consensus 89 LlPI~g~p~LId~~L~~l~~~GI--~~I~Iv~~~~~~~l~~~l~~~y~~~g~~~~~~~VeIl~~~~~~~e~~~~~~~GTa 166 (497)
.+|.-|.+..|...|+.+.+.-. .+|+|+-+...+...+.+. .+.. .+. +.++..... .|.+
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~-~~~~---~~~---i~~~~~~~n---------~g~~ 65 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLT-SLGD---LDN---IVYLRLPEN---------LGGA 65 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHH-HhcC---CCc---eEEEECccc---------cchh
Confidence 35555655678888888876432 3676665544444444443 2211 111 444433221 4667
Q ss_pred HHHHHHHHHhhhhccCCCCcEEEEcCCeeeccCH-HHHHHHH
Q 010922 167 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSH 207 (497)
Q Consensus 167 ~aL~~~~~~i~~~~~~~~e~~LVl~gD~l~~~dl-~~ll~~h 207 (497)
.++..+..... ....+.++++..|.+...+. ..+++..
T Consensus 66 ~~~n~~~~~a~---~~~~d~v~~ld~D~~~~~~~l~~l~~~~ 104 (202)
T cd04185 66 GGFYEGVRRAY---ELGYDWIWLMDDDAIPDPDALEKLLAYA 104 (202)
T ss_pred hHHHHHHHHHh---ccCCCEEEEeCCCCCcChHHHHHHHHHH
Confidence 77666654442 12357899999999987765 3444433
Done!