Query 010925
Match_columns 497
No_of_seqs 246 out of 1064
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 2.5E-43 8.7E-48 363.3 11.7 197 1-202 126-329 (345)
2 1ais_B TFB TFIIB, protein (tra 100.0 3.3E-40 1.1E-44 314.3 23.5 183 1-190 9-191 (200)
3 3k7a_M Transcription initiatio 100.0 5.4E-41 1.9E-45 346.1 5.3 201 1-211 126-339 (345)
4 1c9b_A General transcription f 100.0 3.8E-37 1.3E-41 294.9 22.6 181 1-190 5-185 (207)
5 1zp2_A RNA polymerase II holoe 99.9 4.8E-24 1.7E-28 207.9 19.0 179 3-191 30-217 (235)
6 2i53_A Cyclin K; cell cycle, t 99.9 7.7E-21 2.6E-25 187.2 20.2 180 3-191 43-248 (258)
7 2ivx_A Cyclin-T2; transcriptio 99.9 3E-20 1E-24 183.1 21.9 180 3-191 33-237 (257)
8 3rgf_B Cyclin-C; protein kinas 99.8 1.1E-19 3.9E-24 182.3 20.4 177 3-190 45-238 (285)
9 2b9r_A Human cyclin B1; cell c 99.8 2.4E-19 8E-24 178.4 18.8 177 4-189 41-220 (269)
10 2pk2_A Cyclin-T1, protein TAT; 99.8 2.4E-19 8.1E-24 185.5 13.8 181 3-192 40-245 (358)
11 2cch_B Cyclin A2, cyclin-A; co 99.8 1.1E-18 3.7E-23 172.6 17.8 180 3-190 41-224 (260)
12 2w96_A G1/S-specific cyclin-D1 99.8 5.4E-18 1.8E-22 168.6 18.6 178 4-190 60-253 (271)
13 1jkw_A Cyclin H; cell cycle, c 99.8 1.7E-17 5.9E-22 169.3 19.8 157 3-166 59-229 (323)
14 1ngm_B Transcription factor II 99.7 8.9E-19 3E-23 139.1 2.6 53 338-390 18-70 (72)
15 1g3n_C V-cyclin; cyclin-depend 99.7 1.2E-16 4E-21 157.8 18.3 180 4-190 54-244 (257)
16 2f2c_A Cyclin homolog, V-cycli 99.7 2.7E-16 9.3E-21 154.9 20.4 180 4-190 55-244 (254)
17 1w98_B Cyclin E, G1/S-specific 99.7 1.7E-15 5.9E-20 151.7 18.9 172 4-189 53-237 (283)
18 3g33_B CCND3 protein; Ser/Thr 99.6 9.5E-15 3.3E-19 148.0 19.2 181 3-190 73-263 (306)
19 1ais_B TFB TFIIB, protein (tra 99.5 3.1E-13 1.1E-17 128.0 12.0 92 4-97 108-199 (200)
20 1c9b_A General transcription f 99.3 3E-11 1E-15 115.0 12.2 92 3-96 101-192 (207)
21 1f5q_B Gamma herpesvirus cycli 99.0 7.9E-09 2.7E-13 101.8 19.0 175 4-189 52-237 (252)
22 4bbr_M Transcription initiatio 99.0 4.4E-11 1.5E-15 123.1 0.0 102 4-116 235-336 (345)
23 3k7a_M Transcription initiatio 98.7 1.2E-09 4E-14 112.4 0.0 86 5-92 236-321 (345)
24 1zp2_A RNA polymerase II holoe 97.5 0.00035 1.2E-08 67.3 10.2 66 107-174 33-99 (235)
25 2cch_B Cyclin A2, cyclin-A; co 97.1 0.00092 3.1E-08 65.4 8.3 89 4-93 139-228 (260)
26 2b9r_A Human cyclin B1; cell c 97.1 0.00052 1.8E-08 67.6 6.6 87 4-92 138-224 (269)
27 3rgf_B Cyclin-C; protein kinas 96.9 0.0019 6.4E-08 64.2 8.5 86 4-93 157-242 (285)
28 2w96_A G1/S-specific cyclin-D1 96.9 0.0021 7.3E-08 63.2 8.4 90 4-95 157-259 (271)
29 2ivx_A Cyclin-T2; transcriptio 96.8 0.0041 1.4E-07 60.5 9.3 68 106-175 35-102 (257)
30 2i53_A Cyclin K; cell cycle, t 96.8 0.0044 1.5E-07 60.1 9.3 67 107-175 46-112 (258)
31 2f2c_A Cyclin homolog, V-cycli 96.6 0.0066 2.2E-07 59.1 9.3 86 5-92 153-247 (254)
32 1jkw_A Cyclin H; cell cycle, c 96.6 0.0091 3.1E-07 60.4 10.6 71 107-177 62-132 (323)
33 3h4c_A Transcription factor TF 96.5 0.035 1.2E-06 52.4 12.8 85 6-94 17-105 (260)
34 1g3n_C V-cyclin; cyclin-depend 96.4 0.0079 2.7E-07 58.6 8.2 89 4-92 151-247 (257)
35 2pk2_A Cyclin-T1, protein TAT; 96.3 0.0064 2.2E-07 62.5 7.6 68 106-175 42-109 (358)
36 3m03_A ORC6, origin recognitio 96.2 0.02 6.9E-07 47.9 8.5 80 8-91 6-91 (95)
37 3g33_B CCND3 protein; Ser/Thr 95.3 0.046 1.6E-06 54.8 8.8 89 5-93 172-267 (306)
38 2qdj_A Retinoblastoma-associat 94.9 0.088 3E-06 52.9 9.3 72 7-81 5-81 (304)
39 4ell_A Retinoblastoma-associat 94.7 0.054 1.8E-06 56.5 7.3 71 3-74 281-353 (411)
40 1w98_B Cyclin E, G1/S-specific 94.6 0.11 3.7E-06 51.4 9.1 96 107-204 55-157 (283)
41 2r7g_A PP110, retinoblastoma-a 94.4 0.073 2.5E-06 54.4 7.4 70 3-73 217-288 (347)
42 4elj_A Retinoblastoma-associat 93.9 0.11 3.6E-06 57.3 8.0 70 3-73 526-597 (656)
43 3m03_A ORC6, origin recognitio 89.7 1.5 5E-05 36.6 8.3 76 109-188 6-87 (95)
44 1tc3_C Protein (TC3 transposas 89.7 0.17 5.7E-06 35.0 2.2 29 163-191 20-48 (51)
45 4elj_A Retinoblastoma-associat 89.6 1.4 4.8E-05 48.5 10.5 78 7-89 7-88 (656)
46 3oou_A LIN2118 protein; protei 89.5 7.6 0.00026 31.7 13.1 100 47-204 6-106 (108)
47 3mn2_A Probable ARAC family tr 87.2 11 0.00037 30.7 12.9 100 48-204 4-105 (108)
48 2pmi_B PHO85 cyclin PHO80, ami 87.1 9.2 0.00031 38.0 13.6 104 5-116 78-185 (293)
49 2jt1_A PEFI protein; solution 87.0 0.39 1.3E-05 38.4 3.0 29 162-190 22-50 (77)
50 2qdj_A Retinoblastoma-associat 82.9 4.7 0.00016 40.3 9.4 93 110-211 7-103 (304)
51 2x48_A CAG38821; archeal virus 82.9 0.45 1.6E-05 34.4 1.5 24 163-186 30-53 (55)
52 2lnb_A Z-DNA-binding protein 1 80.8 1.8 6E-05 34.8 4.3 46 51-96 22-67 (80)
53 3i4p_A Transcriptional regulat 77.9 2.3 8E-05 37.9 4.8 35 158-192 11-45 (162)
54 1jko_C HIN recombinase, DNA-in 74.3 0.46 1.6E-05 33.2 -0.8 25 165-189 22-46 (52)
55 2r7g_A PP110, retinoblastoma-a 74.1 20 0.0007 36.4 11.0 127 45-172 104-286 (347)
56 3gbg_A TCP pilus virulence reg 73.3 35 0.0012 32.1 12.2 101 45-204 168-269 (276)
57 1qbj_A Protein (double-strande 72.5 3 0.0001 33.4 3.6 29 162-190 25-53 (81)
58 2e1c_A Putative HTH-type trans 72.4 3.4 0.00012 37.3 4.5 31 162-192 39-69 (171)
59 2p5k_A Arginine repressor; DNA 72.1 5.6 0.00019 29.2 4.9 28 162-189 17-49 (64)
60 2cyy_A Putative HTH-type trans 72.0 3.7 0.00013 35.9 4.5 30 162-191 19-48 (151)
61 2cg4_A Regulatory protein ASNC 71.4 3.9 0.00013 35.7 4.5 30 161-190 19-48 (152)
62 1f5q_B Gamma herpesvirus cycli 71.3 17 0.00057 35.0 9.3 84 4-92 149-241 (252)
63 2dbb_A Putative HTH-type trans 71.1 4 0.00014 35.6 4.5 30 161-190 20-49 (151)
64 2pn6_A ST1022, 150AA long hypo 71.0 4.3 0.00015 35.2 4.6 31 161-191 14-44 (150)
65 1t6s_A Conserved hypothetical 71.0 11 0.00037 34.3 7.4 99 47-177 10-121 (162)
66 3h4c_A Transcription factor TF 70.7 9.5 0.00032 36.1 7.0 69 120-189 28-99 (260)
67 1qgp_A Protein (double strande 70.5 3.6 0.00012 32.4 3.6 28 163-190 30-57 (77)
68 2p5v_A Transcriptional regulat 70.1 4.2 0.00014 36.0 4.5 30 162-191 22-51 (162)
69 2cfx_A HTH-type transcriptiona 69.9 4.4 0.00015 35.2 4.4 30 162-191 17-46 (144)
70 1i1g_A Transcriptional regulat 69.7 4.5 0.00016 34.6 4.5 30 161-190 15-44 (141)
71 1uxc_A FRUR (1-57), fructose r 69.3 3.3 0.00011 31.7 3.1 23 165-187 1-23 (65)
72 2htj_A P fimbrial regulatory p 69.3 5.4 0.00018 31.1 4.4 28 163-190 13-40 (81)
73 2jpc_A SSRB; DNA binding prote 69.0 3.4 0.00012 30.0 3.0 27 163-189 12-38 (61)
74 3lsg_A Two-component response 69.0 15 0.00052 29.5 7.4 49 152-205 7-55 (103)
75 2ia0_A Putative HTH-type trans 68.8 4.6 0.00016 36.4 4.5 31 161-191 28-58 (171)
76 2k9s_A Arabinose operon regula 68.6 9.2 0.00031 31.1 6.0 99 48-203 5-104 (107)
77 3lwf_A LIN1550 protein, putati 68.6 6.7 0.00023 35.2 5.5 48 43-90 24-71 (159)
78 3lsg_A Two-component response 68.5 11 0.00038 30.3 6.4 98 48-202 4-102 (103)
79 1l9z_H Sigma factor SIGA; heli 67.6 87 0.003 32.7 14.5 26 163-188 394-419 (438)
80 2heo_A Z-DNA binding protein 1 67.0 5.4 0.00018 30.4 3.9 31 161-191 22-52 (67)
81 3oou_A LIN2118 protein; protei 67.0 15 0.00053 29.8 7.1 52 148-205 6-57 (108)
82 1fse_A GERE; helix-turn-helix 66.3 6.1 0.00021 29.6 4.1 27 163-189 25-51 (74)
83 2w25_A Probable transcriptiona 66.2 5.8 0.0002 34.5 4.5 30 162-191 19-48 (150)
84 2p7v_B Sigma-70, RNA polymeras 66.0 4.9 0.00017 30.2 3.4 27 163-189 24-50 (68)
85 3e6c_C CPRK, cyclic nucleotide 65.8 14 0.00049 34.1 7.5 29 163-191 176-204 (250)
86 1je8_A Nitrate/nitrite respons 65.8 6.1 0.00021 31.1 4.1 28 163-190 35-62 (82)
87 2w48_A Sorbitol operon regulat 65.3 5.7 0.0002 39.2 4.7 32 160-191 17-48 (315)
88 1xn7_A Hypothetical protein YH 65.1 4.9 0.00017 31.9 3.4 28 162-189 14-41 (78)
89 4ich_A Transcriptional regulat 65.1 4.8 0.00016 39.1 4.0 38 149-187 125-163 (311)
90 2k9s_A Arabinose operon regula 64.5 16 0.00056 29.6 6.7 52 149-205 5-56 (107)
91 1q1h_A TFE, transcription fact 64.3 6.8 0.00023 32.1 4.3 30 161-190 30-59 (110)
92 2o8x_A Probable RNA polymerase 63.9 7.8 0.00027 28.7 4.2 27 163-189 30-56 (70)
93 1x3u_A Transcriptional regulat 63.4 7.3 0.00025 29.7 4.1 28 163-190 30-57 (79)
94 2d1h_A ST1889, 109AA long hypo 62.2 6.8 0.00023 31.2 3.9 29 162-190 34-62 (109)
95 3hug_A RNA polymerase sigma fa 61.6 8.3 0.00028 30.7 4.2 27 163-189 52-78 (92)
96 1oyi_A Double-stranded RNA-bin 61.5 5.1 0.00017 32.4 2.9 26 165-190 31-56 (82)
97 1j5y_A Transcriptional regulat 61.0 8.7 0.0003 35.0 4.8 29 162-190 34-62 (187)
98 1ku3_A Sigma factor SIGA; heli 61.0 8.4 0.00029 29.3 4.0 26 163-188 29-54 (73)
99 1tty_A Sigma-A, RNA polymerase 60.7 6.4 0.00022 31.2 3.4 27 163-189 37-63 (87)
100 3t8r_A Staphylococcus aureus C 60.6 8.2 0.00028 33.8 4.3 45 46-90 11-55 (143)
101 2y75_A HTH-type transcriptiona 59.9 16 0.00053 30.9 6.0 42 49-90 12-53 (129)
102 3la7_A Global nitrogen regulat 59.7 16 0.00054 33.8 6.5 29 163-191 192-220 (243)
103 3mn2_A Probable ARAC family tr 59.7 29 0.00098 28.1 7.4 51 149-205 4-54 (108)
104 3dv8_A Transcriptional regulat 59.5 14 0.00047 33.2 5.9 29 163-191 168-196 (220)
105 3r0a_A Putative transcriptiona 59.4 9.8 0.00034 32.2 4.5 38 153-190 30-68 (123)
106 1jhg_A Trp operon repressor; c 59.0 6.7 0.00023 32.9 3.3 28 163-190 57-84 (101)
107 4ham_A LMO2241 protein; struct 58.8 6.1 0.00021 34.0 3.2 30 161-190 34-64 (134)
108 2x4h_A Hypothetical protein SS 58.3 18 0.00061 30.5 6.1 31 161-191 28-58 (139)
109 3b02_A Transcriptional regulat 58.2 13 0.00043 33.1 5.3 28 163-190 138-165 (195)
110 2jn6_A Protein CGL2762, transp 58.1 13 0.00044 29.8 4.9 28 164-191 23-50 (97)
111 1zx4_A P1 PARB, plasmid partit 58.0 8.7 0.0003 35.8 4.2 28 162-189 22-49 (192)
112 2z99_A Putative uncharacterize 57.9 9.2 0.00031 36.4 4.4 42 46-91 17-58 (219)
113 3c57_A Two component transcrip 57.8 7.6 0.00026 31.4 3.4 27 163-189 41-67 (95)
114 3pvv_A Chromosomal replication 57.7 21 0.00071 29.7 6.1 71 21-93 8-80 (101)
115 2k02_A Ferrous iron transport 57.4 6.8 0.00023 31.9 3.0 29 162-190 14-42 (87)
116 1ylf_A RRF2 family protein; st 57.3 12 0.0004 32.9 4.8 46 44-90 12-57 (149)
117 2fmy_A COOA, carbon monoxide o 57.3 16 0.00056 32.9 6.0 29 163-191 166-194 (220)
118 2elh_A CG11849-PA, LD40883P; s 57.2 6.6 0.00023 31.2 2.9 25 165-189 39-63 (87)
119 2w7n_A TRFB transcriptional re 57.2 13 0.00045 31.0 4.8 32 159-190 29-60 (101)
120 3cuo_A Uncharacterized HTH-typ 57.1 9.8 0.00033 30.0 3.9 30 161-190 35-64 (99)
121 3jth_A Transcription activator 56.7 10 0.00035 30.3 4.0 30 162-191 34-63 (98)
122 3k2z_A LEXA repressor; winged 56.7 11 0.00038 34.4 4.7 32 159-190 19-50 (196)
123 2b0l_A GTP-sensing transcripti 56.5 5.7 0.0002 32.9 2.4 29 162-190 40-69 (102)
124 2gau_A Transcriptional regulat 56.3 20 0.00067 32.5 6.4 29 163-191 179-207 (232)
125 3b73_A PHIH1 repressor-like pr 55.7 10 0.00035 32.1 4.0 31 160-191 24-56 (111)
126 2l8n_A Transcriptional repress 55.6 4.7 0.00016 31.0 1.6 36 164-204 9-44 (67)
127 2rnj_A Response regulator prot 55.5 7.7 0.00026 30.9 3.0 28 163-190 43-70 (91)
128 3ulq_B Transcriptional regulat 54.8 9.2 0.00031 30.8 3.4 27 163-189 43-69 (90)
129 3tgn_A ADC operon repressor AD 53.9 18 0.00063 30.3 5.4 26 165-190 52-77 (146)
130 1pdn_C Protein (PRD paired); p 53.8 10 0.00035 31.0 3.6 28 164-191 33-60 (128)
131 2nnn_A Probable transcriptiona 53.8 28 0.00096 28.8 6.5 27 164-190 52-78 (140)
132 1u78_A TC3 transposase, transp 53.4 18 0.0006 30.4 5.2 41 164-204 22-69 (141)
133 3tqn_A Transcriptional regulat 53.3 8.2 0.00028 32.2 3.0 29 162-190 30-59 (113)
134 2l0k_A Stage III sporulation p 53.3 7 0.00024 32.1 2.4 23 165-187 21-43 (93)
135 2pg4_A Uncharacterized protein 53.0 19 0.00066 28.5 5.1 31 160-190 26-57 (95)
136 3pqk_A Biofilm growth-associat 52.8 12 0.00039 30.2 3.7 29 163-191 35-63 (102)
137 1sfx_A Conserved hypothetical 52.8 11 0.00039 29.8 3.7 28 163-190 33-60 (109)
138 2heo_A Z-DNA binding protein 1 52.6 18 0.00063 27.3 4.6 33 58-90 20-52 (67)
139 3neu_A LIN1836 protein; struct 52.6 11 0.00037 32.2 3.6 29 162-190 34-63 (125)
140 3fx3_A Cyclic nucleotide-bindi 52.4 22 0.00074 32.4 6.0 31 162-192 176-206 (237)
141 3by6_A Predicted transcription 52.2 8.6 0.00029 32.9 3.0 29 162-190 32-61 (126)
142 2ek5_A Predicted transcription 52.2 12 0.0004 32.2 3.8 29 162-190 25-54 (129)
143 3ryp_A Catabolite gene activat 52.0 14 0.00047 32.9 4.5 29 163-191 166-194 (210)
144 3la7_A Global nitrogen regulat 51.2 26 0.00087 32.3 6.4 68 43-110 163-240 (243)
145 3d0s_A Transcriptional regulat 51.0 23 0.00078 32.0 5.9 29 163-191 176-204 (227)
146 2oz6_A Virulence factor regula 51.0 15 0.0005 32.7 4.5 29 163-191 163-191 (207)
147 3oio_A Transcriptional regulat 50.8 36 0.0012 27.7 6.6 51 149-205 9-59 (113)
148 2pmi_B PHO85 cyclin PHO80, ami 50.8 99 0.0034 30.6 10.7 96 106-203 78-179 (293)
149 3oio_A Transcriptional regulat 50.4 18 0.00061 29.7 4.6 100 47-204 8-108 (113)
150 1v4r_A Transcriptional repress 50.2 4.8 0.00016 32.8 1.0 28 163-190 33-61 (102)
151 2jt1_A PEFI protein; solution 50.0 20 0.00069 28.3 4.6 33 61-93 22-54 (77)
152 1u8b_A ADA polyprotein; protei 49.9 13 0.00043 31.6 3.6 38 61-111 91-128 (133)
153 2zcm_A Biofilm operon icaabcd 49.9 21 0.00072 31.0 5.3 44 143-187 6-50 (192)
154 3qkx_A Uncharacterized HTH-typ 49.8 17 0.00057 31.1 4.6 39 148-187 12-51 (188)
155 1y0u_A Arsenical resistance op 49.7 16 0.00056 29.1 4.1 29 163-191 42-70 (96)
156 3e6c_C CPRK, cyclic nucleotide 49.6 40 0.0014 31.0 7.5 48 43-90 147-204 (250)
157 2zcw_A TTHA1359, transcription 49.3 16 0.00055 32.5 4.5 29 163-191 145-173 (202)
158 3k69_A Putative transcription 48.4 14 0.00049 33.0 3.9 43 47-90 13-55 (162)
159 1zyb_A Transcription regulator 48.4 19 0.00064 33.0 4.9 29 163-191 185-213 (232)
160 2y75_A HTH-type transcriptiona 47.9 28 0.00094 29.3 5.5 30 162-191 24-53 (129)
161 3e97_A Transcriptional regulat 47.9 21 0.00071 32.4 5.1 29 163-191 174-202 (231)
162 3dkw_A DNR protein; CRP-FNR, H 47.8 17 0.00057 32.8 4.4 29 162-190 176-204 (227)
163 3kcc_A Catabolite gene activat 47.5 20 0.00067 33.6 5.0 29 163-191 216-244 (260)
164 2hzt_A Putative HTH-type trans 47.4 23 0.00077 29.0 4.7 29 162-190 25-54 (107)
165 1s7o_A Hypothetical UPF0122 pr 47.0 13 0.00044 31.3 3.2 27 163-189 37-63 (113)
166 3t72_q RNA polymerase sigma fa 46.6 14 0.00048 30.5 3.3 26 163-188 38-63 (99)
167 1bl0_A Protein (multiple antib 46.6 23 0.0008 29.8 4.8 102 45-204 10-112 (129)
168 2hr3_A Probable transcriptiona 46.5 58 0.002 27.1 7.5 29 162-190 48-76 (147)
169 1uly_A Hypothetical protein PH 46.5 19 0.00065 33.1 4.5 29 163-191 32-60 (192)
170 3lwf_A LIN1550 protein, putati 46.4 21 0.00073 31.9 4.7 39 153-191 33-71 (159)
171 1z4h_A TORI, TOR inhibition pr 46.1 13 0.00046 27.9 2.9 23 165-187 11-33 (66)
172 1k78_A Paired box protein PAX5 45.9 16 0.00053 31.5 3.7 27 164-190 48-74 (149)
173 3mkl_A HTH-type transcriptiona 45.7 20 0.00067 29.8 4.2 53 146-205 6-58 (120)
174 3bro_A Transcriptional regulat 45.7 24 0.00084 29.2 4.8 28 163-190 49-76 (141)
175 1bl0_A Protein (multiple antib 45.6 39 0.0013 28.4 6.1 53 147-205 11-63 (129)
176 2q24_A Putative TETR family tr 45.3 19 0.00064 31.5 4.2 40 147-187 18-57 (194)
177 2kko_A Possible transcriptiona 45.2 21 0.00071 29.3 4.2 28 163-190 37-64 (108)
178 1on2_A Transcriptional regulat 44.9 24 0.00081 29.9 4.6 28 163-190 21-48 (142)
179 1xsv_A Hypothetical UPF0122 pr 44.8 21 0.00073 29.8 4.2 27 163-189 40-66 (113)
180 2lfw_A PHYR sigma-like domain; 44.8 13 0.00044 32.4 3.0 27 163-189 108-134 (157)
181 3df8_A Possible HXLR family tr 44.6 25 0.00085 29.1 4.6 27 165-191 43-70 (111)
182 3mzy_A RNA polymerase sigma-H 44.5 16 0.00053 31.1 3.4 27 163-189 123-149 (164)
183 1p4w_A RCSB; solution structur 44.5 16 0.00054 30.0 3.3 26 164-189 49-74 (99)
184 1ug2_A 2610100B20RIK gene prod 44.5 44 0.0015 27.5 5.8 41 52-92 43-85 (95)
185 3kkc_A TETR family transcripti 44.3 14 0.00047 31.6 3.0 38 148-186 16-54 (177)
186 2jpc_A SSRB; DNA binding prote 44.1 21 0.00072 25.6 3.6 32 63-94 13-44 (61)
187 3b02_A Transcriptional regulat 44.0 32 0.0011 30.3 5.6 51 43-93 110-169 (195)
188 3nrv_A Putative transcriptiona 43.7 48 0.0016 27.7 6.5 31 160-191 51-81 (148)
189 4ell_A Retinoblastoma-associat 43.6 42 0.0014 34.8 7.0 62 110-172 287-350 (411)
190 1j9i_A GPNU1 DBD;, terminase s 43.5 11 0.00037 28.5 2.0 23 165-187 3-25 (68)
191 2fu4_A Ferric uptake regulatio 43.4 22 0.00075 27.4 3.9 28 163-190 32-64 (83)
192 2qwt_A Transcriptional regulat 43.2 23 0.00078 31.2 4.5 38 149-187 18-55 (196)
193 1neq_A DNA-binding protein NER 43.2 20 0.00068 27.8 3.5 25 162-186 20-44 (74)
194 3iwz_A CAP-like, catabolite ac 43.1 22 0.00076 32.0 4.5 29 163-191 186-214 (230)
195 3frw_A Putative Trp repressor 42.9 22 0.00076 30.1 3.9 31 160-190 54-84 (107)
196 3bru_A Regulatory protein, TET 42.8 24 0.0008 31.3 4.5 40 147-187 33-73 (222)
197 3h5t_A Transcriptional regulat 42.7 13 0.00044 36.6 2.9 25 163-187 8-32 (366)
198 4a0z_A Transcription factor FA 42.7 27 0.00094 32.1 5.0 31 162-192 24-54 (190)
199 3ulq_B Transcriptional regulat 42.6 27 0.00092 28.0 4.3 32 63-94 44-75 (90)
200 1ub9_A Hypothetical protein PH 42.2 14 0.00048 29.0 2.6 28 163-190 29-56 (100)
201 1r1u_A CZRA, repressor protein 42.1 22 0.00075 28.9 3.9 28 163-190 38-65 (106)
202 3t8r_A Staphylococcus aureus C 42.1 18 0.00063 31.5 3.5 39 153-191 17-55 (143)
203 3mky_B Protein SOPB; partition 42.0 25 0.00085 32.7 4.5 36 154-189 32-67 (189)
204 2jsc_A Transcriptional regulat 41.9 25 0.00086 29.3 4.3 27 164-190 34-60 (118)
205 2v7f_A RPS19, RPS19E SSU ribos 41.8 32 0.0011 30.6 5.1 41 149-190 53-107 (150)
206 1zyb_A Transcription regulator 41.5 51 0.0017 29.9 6.7 51 40-90 159-213 (232)
207 1j1v_A Chromosomal replication 41.4 40 0.0014 27.4 5.3 71 21-93 4-77 (94)
208 2a6h_F RNA polymerase sigma fa 41.2 2.2E+02 0.0075 29.2 12.2 26 163-188 379-404 (423)
209 2hsg_A Glucose-resistance amyl 41.2 13 0.00044 35.9 2.7 24 164-187 2-25 (332)
210 3e7l_A Transcriptional regulat 41.1 31 0.0011 25.6 4.2 25 166-190 34-58 (63)
211 2hku_A A putative transcriptio 41.1 33 0.0011 30.3 5.3 42 145-187 21-62 (215)
212 2xi8_A Putative transcription 40.8 18 0.00061 25.9 2.8 39 163-206 13-51 (66)
213 1ntc_A Protein (nitrogen regul 40.7 22 0.00076 28.5 3.6 29 159-189 61-89 (91)
214 2p7v_B Sigma-70, RNA polymeras 40.6 32 0.0011 25.4 4.3 33 62-94 24-56 (68)
215 2glo_A Brinker CG9653-PA; prot 40.6 15 0.00053 26.7 2.4 23 167-189 28-50 (59)
216 1xd7_A YWNA; structural genomi 40.5 33 0.0011 29.7 4.9 44 44-90 7-50 (145)
217 1u8b_A ADA polyprotein; protei 40.4 34 0.0012 28.9 4.9 38 162-204 91-128 (133)
218 3c2b_A Transcriptional regulat 40.2 27 0.00092 30.9 4.5 39 148-187 19-58 (221)
219 1rzs_A Antirepressor, regulato 40.0 16 0.00056 27.0 2.5 21 165-185 11-31 (61)
220 1fse_A GERE; helix-turn-helix 40.0 46 0.0016 24.5 5.1 32 63-94 26-57 (74)
221 1ft9_A Carbon monoxide oxidati 39.9 18 0.00062 32.7 3.3 29 163-191 162-190 (222)
222 2bgc_A PRFA; bacterial infecti 39.9 37 0.0013 31.0 5.5 29 163-191 167-197 (238)
223 2fmy_A COOA, carbon monoxide o 39.7 43 0.0015 30.0 5.9 29 62-90 166-194 (220)
224 2f2e_A PA1607; transcription f 39.7 31 0.0011 30.0 4.6 29 163-191 36-64 (146)
225 3kz3_A Repressor protein CI; f 39.6 17 0.00059 27.7 2.7 39 163-206 24-62 (80)
226 3bpv_A Transcriptional regulat 39.5 29 0.001 28.6 4.3 29 162-190 41-69 (138)
227 1qpz_A PURA, protein (purine n 39.3 16 0.00056 35.4 3.1 35 165-204 1-35 (340)
228 2zkz_A Transcriptional repress 39.2 19 0.00064 29.1 2.9 28 163-190 40-67 (99)
229 3omt_A Uncharacterized protein 38.8 19 0.00063 26.8 2.7 40 163-207 20-59 (73)
230 3dv8_A Transcriptional regulat 38.5 43 0.0015 29.7 5.6 48 43-90 146-196 (220)
231 3bqz_B HTH-type transcriptiona 38.2 36 0.0012 29.2 4.8 38 149-187 7-45 (194)
232 2lkp_A Transcriptional regulat 38.2 38 0.0013 27.8 4.8 28 163-190 44-71 (119)
233 2qvo_A Uncharacterized protein 38.1 36 0.0012 27.0 4.4 28 163-190 29-56 (95)
234 2a6c_A Helix-turn-helix motif; 38.0 58 0.002 24.9 5.6 43 160-206 27-69 (83)
235 4ev0_A Transcription regulator 38.0 27 0.00092 31.1 4.1 29 163-191 162-190 (216)
236 3f6o_A Probable transcriptiona 38.0 23 0.00077 29.5 3.3 30 162-191 29-58 (118)
237 2oqg_A Possible transcriptiona 38.0 22 0.00077 28.7 3.3 28 163-190 33-60 (114)
238 3knw_A Putative transcriptiona 37.8 32 0.0011 30.0 4.6 40 147-187 17-57 (212)
239 2rn7_A IS629 ORFA; helix, all 37.6 23 0.00079 28.8 3.3 27 165-191 31-57 (108)
240 3nxc_A HTH-type protein SLMA; 37.4 22 0.00074 31.2 3.3 42 145-186 25-67 (212)
241 1ku9_A Hypothetical protein MJ 37.2 38 0.0013 28.1 4.7 29 162-190 39-67 (152)
242 4a5n_A Uncharacterized HTH-typ 37.2 40 0.0014 29.1 4.9 30 162-191 37-67 (131)
243 3lfp_A CSP231I C protein; tran 37.1 53 0.0018 25.9 5.4 43 163-206 13-55 (98)
244 2r1j_L Repressor protein C2; p 37.0 21 0.00072 25.7 2.7 38 163-205 17-54 (68)
245 3mkl_A HTH-type transcriptiona 36.9 35 0.0012 28.2 4.4 99 47-204 8-107 (120)
246 2nnn_A Probable transcriptiona 36.7 1.2E+02 0.0041 24.7 7.8 31 63-93 52-82 (140)
247 3bro_A Transcriptional regulat 36.7 80 0.0027 25.9 6.7 40 51-90 38-77 (141)
248 2l8n_A Transcriptional repress 36.7 17 0.00059 27.7 2.2 23 61-83 7-29 (67)
249 3c7j_A Transcriptional regulat 36.6 25 0.00087 33.1 3.8 30 161-190 46-75 (237)
250 1x3u_A Transcriptional regulat 36.6 53 0.0018 24.6 5.1 33 62-94 30-62 (79)
251 1zug_A Phage 434 CRO protein; 36.6 21 0.00073 26.0 2.7 25 163-187 15-39 (71)
252 3ppb_A Putative TETR family tr 36.6 34 0.0012 29.2 4.4 40 147-187 12-52 (195)
253 3fm5_A Transcriptional regulat 36.6 40 0.0014 28.4 4.8 30 161-190 51-80 (150)
254 1or7_A Sigma-24, RNA polymeras 36.5 29 0.00098 30.6 4.0 27 163-189 155-181 (194)
255 1bia_A BIRA bifunctional prote 36.4 30 0.001 34.3 4.5 31 161-191 16-46 (321)
256 2dg7_A Putative transcriptiona 36.3 29 0.001 30.1 4.0 39 148-187 11-50 (195)
257 3lwj_A Putative TETR-family tr 36.2 36 0.0012 29.5 4.6 39 148-187 16-55 (202)
258 1r69_A Repressor protein CI; g 36.2 23 0.00079 25.6 2.8 25 163-187 13-37 (69)
259 3kjx_A Transcriptional regulat 36.1 15 0.00052 35.7 2.2 24 164-187 10-33 (344)
260 2gau_A Transcriptional regulat 36.1 74 0.0025 28.6 6.9 48 43-90 151-207 (232)
261 3g3z_A NMB1585, transcriptiona 35.9 1.1E+02 0.0039 25.2 7.6 27 164-190 45-71 (145)
262 1ku3_A Sigma factor SIGA; heli 35.8 43 0.0015 25.1 4.4 31 62-92 29-59 (73)
263 2qtq_A Transcriptional regulat 35.7 48 0.0016 28.8 5.3 40 147-187 19-59 (213)
264 1r1t_A Transcriptional repress 35.5 45 0.0015 28.0 4.9 28 163-190 58-85 (122)
265 1tty_A Sigma-A, RNA polymerase 35.4 46 0.0016 26.0 4.6 32 62-93 37-68 (87)
266 1u2w_A CADC repressor, cadmium 35.4 29 0.00099 29.1 3.6 29 162-190 54-82 (122)
267 2i10_A Putative TETR transcrip 35.3 45 0.0016 29.4 5.2 38 148-186 15-53 (202)
268 2fq4_A Transcriptional regulat 35.2 38 0.0013 29.4 4.6 38 148-186 16-54 (192)
269 3f1b_A TETR-like transcription 35.2 39 0.0013 29.2 4.6 39 148-187 18-57 (203)
270 2kpj_A SOS-response transcript 35.2 34 0.0012 26.9 3.8 41 160-205 18-58 (94)
271 1ylf_A RRF2 family protein; st 35.2 44 0.0015 29.0 4.9 38 153-191 20-57 (149)
272 2hin_A GP39, repressor protein 35.0 26 0.0009 27.2 3.0 22 166-187 12-33 (71)
273 2fbh_A Transcriptional regulat 34.9 48 0.0016 27.5 5.0 30 161-190 49-78 (146)
274 2k9q_A Uncharacterized protein 34.7 23 0.00079 26.6 2.7 38 163-205 14-51 (77)
275 3fx3_A Cyclic nucleotide-bindi 34.7 45 0.0015 30.2 5.1 48 43-90 152-205 (237)
276 2gxg_A 146AA long hypothetical 34.7 39 0.0013 28.1 4.4 29 162-190 48-76 (146)
277 2o7t_A Transcriptional regulat 34.6 32 0.0011 30.0 4.0 39 148-187 12-51 (199)
278 3edp_A LIN2111 protein; APC883 34.5 26 0.00088 33.1 3.5 29 162-190 30-59 (236)
279 3b7h_A Prophage LP1 protein 11 34.5 25 0.00085 26.2 2.8 41 162-206 18-58 (78)
280 2ao9_A Phage protein; structur 34.5 58 0.002 29.2 5.6 24 164-187 48-71 (155)
281 2b5a_A C.BCLI; helix-turn-heli 34.4 25 0.00086 26.1 2.8 38 163-205 22-59 (77)
282 1je8_A Nitrate/nitrite respons 34.4 58 0.002 25.2 5.1 32 63-94 36-67 (82)
283 2oz6_A Virulence factor regula 34.4 37 0.0013 29.9 4.4 29 62-90 163-191 (207)
284 3eco_A MEPR; mutlidrug efflux 34.1 36 0.0012 28.2 4.0 28 163-190 46-73 (139)
285 3deu_A Transcriptional regulat 34.1 82 0.0028 27.3 6.6 30 161-190 65-94 (166)
286 1qgp_A Protein (double strande 34.0 56 0.0019 25.4 4.8 32 60-91 28-59 (77)
287 1hw1_A FADR, fatty acid metabo 34.0 29 0.001 32.1 3.8 30 161-190 27-57 (239)
288 3q0w_A HTH-type transcriptiona 34.0 32 0.0011 31.1 4.0 39 148-187 48-87 (236)
289 1t33_A Putative transcriptiona 33.9 43 0.0015 29.6 4.8 39 148-187 16-54 (224)
290 1zs4_A Regulatory protein CII; 33.9 27 0.00093 28.2 3.0 24 165-188 25-48 (83)
291 3fmy_A HTH-type transcriptiona 33.9 20 0.00068 27.1 2.1 24 163-186 23-46 (73)
292 2eth_A Transcriptional regulat 33.8 41 0.0014 28.6 4.4 27 164-190 58-84 (154)
293 2nyx_A Probable transcriptiona 33.8 47 0.0016 28.8 4.9 27 164-190 59-85 (168)
294 1adr_A P22 C2 repressor; trans 33.8 25 0.00085 26.0 2.7 38 163-205 17-54 (76)
295 3bj6_A Transcriptional regulat 33.8 36 0.0012 28.6 4.1 28 163-190 53-80 (152)
296 1l3l_A Transcriptional activat 33.7 33 0.0011 31.8 4.1 27 163-189 187-213 (234)
297 2rae_A Transcriptional regulat 33.7 50 0.0017 28.7 5.2 41 146-187 19-60 (207)
298 3bwg_A Uncharacterized HTH-typ 33.7 28 0.00097 32.8 3.6 29 162-190 26-55 (239)
299 2pij_A Prophage PFL 6 CRO; tra 33.4 51 0.0017 23.9 4.3 21 166-186 15-35 (67)
300 3lhq_A Acrab operon repressor 33.4 42 0.0014 29.2 4.6 39 148-187 18-57 (220)
301 2iu5_A DHAS, YCEG, HTH-type dh 33.4 22 0.00076 31.1 2.7 42 145-187 14-56 (195)
302 1z7u_A Hypothetical protein EF 33.4 34 0.0012 28.1 3.7 28 163-190 34-62 (112)
303 3vp5_A Transcriptional regulat 33.3 39 0.0013 29.5 4.3 40 147-187 15-55 (189)
304 1pb6_A Hypothetical transcript 33.3 44 0.0015 29.1 4.7 39 148-187 22-61 (212)
305 2g7s_A Transcriptional regulat 33.3 33 0.0011 29.2 3.8 39 148-187 12-51 (194)
306 3ryp_A Catabolite gene activat 33.2 59 0.002 28.6 5.6 29 62-90 166-194 (210)
307 3vpr_A Transcriptional regulat 33.2 56 0.0019 28.1 5.3 38 149-187 8-46 (190)
308 1y7y_A C.AHDI; helix-turn-heli 33.1 27 0.00094 25.6 2.8 38 163-205 25-62 (74)
309 2v57_A TETR family transcripti 33.1 26 0.00088 30.2 3.0 38 148-187 18-55 (190)
310 3bs3_A Putative DNA-binding pr 32.9 28 0.00094 25.8 2.8 39 163-206 22-60 (76)
311 3qq6_A HTH-type transcriptiona 32.8 26 0.00089 26.8 2.7 40 163-206 22-61 (78)
312 2rdp_A Putative transcriptiona 32.7 99 0.0034 25.7 6.7 27 164-190 56-82 (150)
313 2eh3_A Transcriptional regulat 32.7 42 0.0014 28.7 4.4 27 160-186 17-44 (179)
314 3kor_A Possible Trp repressor; 32.7 31 0.0011 29.7 3.3 32 159-190 70-101 (119)
315 1rkt_A Protein YFIR; transcrip 32.7 42 0.0014 29.5 4.5 36 149-185 17-53 (205)
316 1qbj_A Protein (double-strande 32.7 49 0.0017 26.2 4.3 31 61-91 25-55 (81)
317 3bd1_A CRO protein; transcript 32.6 30 0.001 26.3 3.0 23 166-188 13-35 (79)
318 3dcf_A Transcriptional regulat 32.6 42 0.0014 29.3 4.4 39 148-187 35-74 (218)
319 3t76_A VANU, transcriptional r 32.5 26 0.00088 28.0 2.7 40 163-208 36-75 (88)
320 3bdd_A Regulatory protein MARR 32.5 35 0.0012 28.2 3.7 28 163-190 44-71 (142)
321 3f8m_A GNTR-family protein tra 32.5 30 0.001 32.8 3.6 30 161-190 32-62 (248)
322 3ech_A MEXR, multidrug resista 32.3 63 0.0021 26.9 5.3 27 164-190 51-77 (142)
323 3c57_A Two component transcrip 32.2 48 0.0016 26.5 4.3 31 64-94 43-73 (95)
324 2fa5_A Transcriptional regulat 32.2 47 0.0016 28.3 4.6 30 162-191 61-90 (162)
325 2wv0_A YVOA, HTH-type transcri 32.1 31 0.0011 32.6 3.6 29 162-190 31-60 (243)
326 1rp3_A RNA polymerase sigma fa 32.1 39 0.0013 30.6 4.2 27 162-188 201-227 (239)
327 1u78_A TC3 transposase, transp 32.0 52 0.0018 27.3 4.7 70 8-85 25-101 (141)
328 2zcw_A TTHA1359, transcription 32.0 42 0.0014 29.6 4.4 29 62-90 145-173 (202)
329 1umq_A Photosynthetic apparatu 32.0 29 0.001 27.6 2.8 23 166-188 56-78 (81)
330 1tbx_A ORF F-93, hypothetical 32.0 44 0.0015 26.4 4.0 29 162-190 20-52 (99)
331 2d6y_A Putative TETR family re 31.8 60 0.0021 28.5 5.4 40 147-187 11-51 (202)
332 3col_A Putative transcription 31.7 38 0.0013 29.0 3.9 42 145-187 11-53 (196)
333 1vi0_A Transcriptional regulat 31.6 34 0.0012 30.3 3.7 38 148-186 12-50 (206)
334 3r0a_A Putative transcriptiona 31.5 57 0.002 27.3 4.9 38 53-90 31-69 (123)
335 1uxc_A FRUR (1-57), fructose r 31.5 37 0.0013 25.6 3.3 21 64-84 1-21 (65)
336 3ic7_A Putative transcriptiona 31.5 8.8 0.0003 32.8 -0.4 29 162-190 32-61 (126)
337 3kz9_A SMCR; transcriptional r 31.4 44 0.0015 28.8 4.3 38 149-187 22-60 (206)
338 2yve_A Transcriptional regulat 31.4 44 0.0015 29.0 4.3 39 148-187 8-47 (185)
339 1p4w_A RCSB; solution structur 31.4 50 0.0017 26.9 4.3 32 63-94 49-80 (99)
340 2qib_A TETR-family transcripti 31.4 38 0.0013 30.6 4.0 39 148-187 17-56 (231)
341 2a61_A Transcriptional regulat 31.2 37 0.0013 28.2 3.7 28 163-190 46-73 (145)
342 3cjn_A Transcriptional regulat 31.2 37 0.0013 29.0 3.7 29 162-190 64-92 (162)
343 2hyt_A TETR-family transcripti 31.2 45 0.0015 29.1 4.3 38 149-187 17-55 (197)
344 3f6w_A XRE-family like protein 31.2 29 0.00098 26.4 2.7 39 163-206 26-64 (83)
345 3uj3_X DNA-invertase; helix-tu 31.1 10 0.00035 34.5 0.0 52 138-190 133-184 (193)
346 2fsw_A PG_0823 protein; alpha- 31.1 46 0.0016 27.0 4.1 30 162-191 36-66 (107)
347 2h09_A Transcriptional regulat 31.1 37 0.0013 29.1 3.7 29 163-191 53-81 (155)
348 3bjb_A Probable transcriptiona 31.0 40 0.0014 29.9 4.0 38 148-186 26-64 (207)
349 1z91_A Organic hydroperoxide r 30.9 61 0.0021 27.0 5.0 27 164-190 54-80 (147)
350 2o3f_A Putative HTH-type trans 30.9 33 0.0011 28.6 3.2 27 164-190 39-65 (111)
351 3s8q_A R-M controller protein; 30.8 29 0.001 26.3 2.7 39 163-206 23-61 (82)
352 3dkw_A DNR protein; CRP-FNR, H 30.8 43 0.0015 30.0 4.2 33 61-93 176-208 (227)
353 3rd3_A Probable transcriptiona 30.7 52 0.0018 28.1 4.7 41 145-186 11-52 (197)
354 2wiu_B HTH-type transcriptiona 30.7 37 0.0013 25.9 3.3 39 163-206 24-62 (88)
355 3dew_A Transcriptional regulat 30.7 40 0.0014 29.0 3.9 41 147-188 11-52 (206)
356 2ef8_A C.ECOT38IS, putative tr 30.6 30 0.001 26.1 2.7 24 163-186 22-45 (84)
357 3nrv_A Putative transcriptiona 30.5 1.3E+02 0.0043 25.0 7.0 28 63-90 54-81 (148)
358 3b81_A Transcriptional regulat 30.4 53 0.0018 28.3 4.7 40 147-187 14-54 (203)
359 2cw1_A SN4M; lambda CRO fold, 30.4 34 0.0012 26.0 2.9 22 166-187 15-36 (65)
360 1yyv_A Putative transcriptiona 30.3 41 0.0014 28.8 3.8 29 162-190 46-75 (131)
361 3s5r_A Transcriptional regulat 30.3 48 0.0016 29.0 4.4 41 146-187 12-53 (216)
362 4fx0_A Probable transcriptiona 30.3 60 0.0021 27.8 4.9 28 163-190 51-78 (148)
363 3on4_A Transcriptional regulat 30.3 40 0.0014 28.7 3.8 40 147-187 13-53 (191)
364 2o8x_A Probable RNA polymerase 30.3 58 0.002 23.6 4.2 30 63-92 31-60 (70)
365 3dpj_A Transcription regulator 30.2 53 0.0018 28.2 4.6 39 148-187 12-51 (194)
366 2ict_A Antitoxin HIGA; helix-t 30.1 36 0.0012 26.6 3.2 38 163-205 20-57 (94)
367 1o5l_A Transcriptional regulat 30.1 15 0.00053 33.1 1.0 30 162-191 162-191 (213)
368 3eet_A Putative GNTR-family tr 30.0 34 0.0012 33.0 3.6 29 162-190 50-79 (272)
369 3cwr_A Transcriptional regulat 29.9 40 0.0014 29.1 3.8 39 148-187 21-60 (208)
370 3jsj_A Putative TETR-family tr 29.8 44 0.0015 28.7 4.0 40 147-187 12-51 (190)
371 3cdh_A Transcriptional regulat 29.7 52 0.0018 27.8 4.4 29 162-190 55-83 (155)
372 1x57_A Endothelial differentia 29.7 51 0.0017 25.5 4.0 41 161-206 23-63 (91)
373 3mvp_A TETR/ACRR transcription 29.6 41 0.0014 29.4 3.8 38 149-187 31-69 (217)
374 2wui_A MEXZ, transcriptional r 29.6 51 0.0017 29.1 4.5 38 148-186 15-53 (210)
375 3f0c_A TETR-molecule A, transc 29.6 53 0.0018 28.7 4.6 41 146-187 13-54 (216)
376 2o20_A Catabolite control prot 29.6 11 0.00039 36.4 0.0 25 164-188 5-29 (332)
377 2zb9_A Putative transcriptiona 29.5 41 0.0014 29.6 3.8 38 149-187 28-66 (214)
378 3ccy_A Putative TETR-family tr 29.5 34 0.0011 30.0 3.2 39 146-185 16-55 (203)
379 3gzi_A Transcriptional regulat 29.5 47 0.0016 29.1 4.2 38 149-187 22-60 (218)
380 2q0o_A Probable transcriptiona 29.5 34 0.0012 31.8 3.4 27 163-189 189-215 (236)
381 2gqq_A Leucine-responsive regu 29.5 9.2 0.00031 33.8 -0.6 34 158-191 21-54 (163)
382 3sxy_A Transcriptional regulat 29.5 32 0.0011 31.6 3.2 29 161-189 32-60 (218)
383 1g2h_A Transcriptional regulat 29.3 32 0.0011 25.4 2.5 23 166-188 35-57 (61)
384 2pex_A Transcriptional regulat 29.2 45 0.0015 28.2 3.9 29 162-190 59-87 (153)
385 2fbq_A Probable transcriptiona 29.2 53 0.0018 29.7 4.6 37 149-186 12-49 (235)
386 3hug_A RNA polymerase sigma fa 29.1 57 0.0019 25.6 4.2 30 63-92 53-82 (92)
387 2fbi_A Probable transcriptiona 29.0 35 0.0012 28.3 3.0 28 163-190 49-76 (142)
388 2rek_A Putative TETR-family tr 28.9 48 0.0016 28.8 4.1 39 148-187 20-58 (199)
389 3eus_A DNA-binding protein; st 28.9 33 0.0011 26.7 2.7 39 163-206 26-64 (86)
390 3bhq_A Transcriptional regulat 28.8 72 0.0025 28.0 5.3 37 149-186 17-54 (211)
391 3he0_A Transcriptional regulat 28.8 72 0.0024 27.3 5.2 42 145-187 12-54 (196)
392 3bni_A Putative TETR-family tr 28.6 55 0.0019 29.4 4.6 39 148-187 47-86 (229)
393 1lj9_A Transcriptional regulat 28.5 50 0.0017 27.4 4.0 28 163-190 42-69 (144)
394 3qbm_A TETR transcriptional re 28.5 60 0.0021 27.8 4.7 38 148-186 11-49 (199)
395 1d5y_A ROB transcription facto 28.3 45 0.0015 31.6 4.1 99 48-204 5-104 (292)
396 2ras_A Transcriptional regulat 28.3 58 0.002 28.5 4.6 38 148-186 15-53 (212)
397 4fe7_A Xylose operon regulator 28.2 76 0.0026 31.7 6.0 71 8-87 324-395 (412)
398 1sgm_A Putative HTH-type trans 28.2 30 0.001 29.5 2.6 40 147-187 9-49 (191)
399 3kz3_A Repressor protein CI; f 28.1 81 0.0028 23.7 4.9 21 62-82 24-44 (80)
400 3d0s_A Transcriptional regulat 28.1 1E+02 0.0035 27.5 6.4 29 62-90 176-204 (227)
401 2guh_A Putative TETR-family tr 28.0 51 0.0018 29.5 4.3 39 148-187 43-82 (214)
402 2ewt_A BLDD, putative DNA-bind 28.0 44 0.0015 24.2 3.2 39 163-206 20-60 (71)
403 1b4a_A Arginine repressor; hel 27.8 36 0.0012 30.3 3.0 30 162-191 17-51 (149)
404 3nrg_A TETR family transcripti 27.7 29 0.00099 30.4 2.4 40 147-187 16-56 (217)
405 3ivp_A Putative transposon-rel 27.7 2.2E+02 0.0074 23.3 7.9 74 62-136 24-110 (126)
406 2htj_A P fimbrial regulatory p 27.7 90 0.0031 23.8 5.1 29 62-90 13-41 (81)
407 1eto_A FIS, factor for inversi 27.7 47 0.0016 27.3 3.5 23 166-188 73-95 (98)
408 4ghj_A Probable transcriptiona 27.5 34 0.0012 28.1 2.7 37 163-206 48-84 (101)
409 2ibd_A Possible transcriptiona 27.5 61 0.0021 28.4 4.6 37 149-186 19-56 (204)
410 2qww_A Transcriptional regulat 27.5 47 0.0016 28.0 3.7 28 163-190 54-81 (154)
411 3h5o_A Transcriptional regulat 27.5 13 0.00044 36.1 0.0 44 164-209 4-47 (339)
412 1zk8_A Transcriptional regulat 27.4 49 0.0017 28.2 3.9 42 145-187 9-51 (183)
413 2d1h_A ST1889, 109AA long hypo 27.4 72 0.0025 24.9 4.6 30 61-90 34-63 (109)
414 1lmb_3 Protein (lambda repress 27.3 36 0.0012 26.3 2.7 39 163-206 29-67 (92)
415 2nx4_A Transcriptional regulat 27.3 59 0.002 28.3 4.4 38 148-186 14-52 (194)
416 3anp_C Transcriptional repress 27.3 62 0.0021 28.2 4.6 37 149-186 14-51 (204)
417 1s3j_A YUSO protein; structura 27.3 56 0.0019 27.5 4.1 28 163-190 50-77 (155)
418 2k27_A Paired box protein PAX- 27.2 18 0.00062 31.5 0.9 28 164-191 41-68 (159)
419 2dk5_A DNA-directed RNA polyme 27.2 56 0.0019 26.4 3.9 28 162-189 34-61 (91)
420 2rnj_A Response regulator prot 27.0 45 0.0015 26.2 3.2 32 63-94 44-75 (91)
421 2gen_A Probable transcriptiona 27.0 70 0.0024 27.9 4.9 38 148-186 11-49 (197)
422 3kcc_A Catabolite gene activat 27.0 95 0.0033 28.7 6.1 29 62-90 216-244 (260)
423 2dg8_A Putative TETR-family tr 26.9 44 0.0015 29.0 3.5 42 145-187 10-52 (193)
424 3iwf_A Transcription regulator 26.8 51 0.0017 27.4 3.6 28 163-190 34-61 (107)
425 2ppx_A AGR_C_3184P, uncharacte 26.8 39 0.0013 26.9 2.8 24 163-186 42-65 (99)
426 3e97_A Transcriptional regulat 26.6 86 0.003 28.1 5.6 29 62-90 174-202 (231)
427 3gbg_A TCP pilus virulence reg 26.6 57 0.0019 30.6 4.4 55 144-205 166-220 (276)
428 4aci_A HTH-type transcriptiona 26.6 39 0.0013 29.0 3.1 41 146-187 16-57 (191)
429 3crj_A Transcription regulator 26.5 67 0.0023 28.1 4.7 37 148-185 18-55 (199)
430 2pg4_A Uncharacterized protein 26.5 75 0.0026 24.9 4.5 32 59-90 26-58 (95)
431 2bgc_A PRFA; bacterial infecti 26.4 85 0.0029 28.5 5.5 28 63-90 169-197 (238)
432 2hs5_A Putative transcriptiona 26.3 39 0.0013 31.7 3.2 30 161-190 48-77 (239)
433 3szt_A QCSR, quorum-sensing co 26.3 42 0.0014 31.4 3.4 28 163-190 189-216 (237)
434 3clo_A Transcriptional regulat 26.2 42 0.0014 31.7 3.4 28 163-190 211-238 (258)
435 3g7r_A Putative transcriptiona 26.2 65 0.0022 28.7 4.6 40 146-186 37-77 (221)
436 3rh2_A Hypothetical TETR-like 26.1 51 0.0017 28.9 3.8 39 148-187 7-46 (212)
437 4hbl_A Transcriptional regulat 26.1 51 0.0017 27.8 3.7 29 162-190 53-81 (149)
438 1jgs_A Multiple antibiotic res 26.1 59 0.002 26.7 4.0 28 163-190 47-74 (138)
439 2hyj_A Putative TETR-family tr 26.1 55 0.0019 28.7 4.0 36 149-185 17-53 (200)
440 3nqo_A MARR-family transcripti 26.1 54 0.0019 29.2 4.0 29 162-190 55-83 (189)
441 3eco_A MEPR; mutlidrug efflux 26.1 1.2E+02 0.0042 24.8 6.0 40 51-90 35-74 (139)
442 2iai_A Putative transcriptiona 26.1 67 0.0023 28.8 4.7 38 148-186 34-72 (230)
443 2f07_A YVDT; helix-turn-helix, 26.0 68 0.0023 28.0 4.6 39 147-186 13-52 (197)
444 2lr8_A CAsp8-associated protei 31.9 14 0.00049 28.8 0.0 41 52-92 24-65 (70)
445 1gdt_A GD resolvase, protein ( 25.9 1.3E+02 0.0045 26.6 6.5 46 137-186 135-180 (183)
446 3s2w_A Transcriptional regulat 25.8 52 0.0018 28.1 3.7 29 162-190 62-90 (159)
447 3jw4_A Transcriptional regulat 25.8 45 0.0015 28.0 3.2 28 163-190 56-83 (148)
448 1z6r_A MLC protein; transcript 25.8 69 0.0023 32.2 5.1 32 160-191 26-57 (406)
449 3vib_A MTRR; helix-turn-helix 25.6 69 0.0024 28.1 4.6 37 149-186 15-52 (210)
450 3k0l_A Repressor protein; heli 25.6 1E+02 0.0036 26.2 5.7 28 163-190 59-86 (162)
451 3pas_A TETR family transcripti 25.5 32 0.0011 29.4 2.3 39 148-187 12-51 (195)
452 3iwz_A CAP-like, catabolite ac 25.5 63 0.0021 28.9 4.4 29 62-90 186-214 (230)
453 1jhg_A Trp operon repressor; c 25.5 66 0.0023 26.7 4.0 30 61-91 56-85 (101)
454 3npi_A TETR family regulatory 25.4 39 0.0013 30.9 2.9 42 145-187 19-61 (251)
455 3nnr_A Transcriptional regulat 25.4 53 0.0018 29.3 3.8 40 147-187 8-48 (228)
456 3c07_A Putative TETR-family tr 25.2 63 0.0021 30.4 4.5 39 148-187 45-84 (273)
457 2xdn_A HTH-type transcriptiona 25.1 54 0.0018 28.8 3.7 39 148-187 15-54 (210)
458 3op9_A PLI0006 protein; struct 25.0 49 0.0017 26.8 3.2 39 163-206 21-59 (114)
459 3hrs_A Metalloregulator SCAR; 25.0 44 0.0015 30.9 3.2 30 162-191 18-47 (214)
460 3ljl_A Transcriptional regulat 25.0 32 0.0011 29.2 2.1 39 148-187 18-57 (156)
461 2jj7_A Hemolysin II regulatory 24.9 44 0.0015 28.6 3.1 38 149-187 12-50 (186)
462 2id3_A Putative transcriptiona 24.7 71 0.0024 28.6 4.6 38 149-187 45-83 (225)
463 3bja_A Transcriptional regulat 24.6 32 0.0011 28.3 2.0 29 162-190 45-73 (139)
464 1t6s_A Conserved hypothetical 24.6 58 0.002 29.3 3.8 38 148-189 10-49 (162)
465 2l49_A C protein; P2 bacteriop 24.6 43 0.0015 26.3 2.7 38 163-205 16-53 (99)
466 2frh_A SARA, staphylococcal ac 24.6 46 0.0016 27.7 3.0 28 163-190 52-79 (127)
467 1vz0_A PARB, chromosome partit 24.6 70 0.0024 30.1 4.6 40 145-188 119-158 (230)
468 3ihu_A Transcriptional regulat 24.6 44 0.0015 30.7 3.2 30 161-190 36-65 (222)
469 1z0x_A Transcriptional regulat 24.5 72 0.0025 28.8 4.6 43 145-187 6-49 (220)
470 3ech_A MEXR, multidrug resista 24.5 1.2E+02 0.0042 25.0 5.8 28 63-90 51-78 (142)
471 3o60_A LIN0861 protein; PSI, M 24.5 47 0.0016 29.3 3.2 40 148-187 23-63 (185)
472 2q1z_A RPOE, ECF SIGE; ECF sig 24.5 19 0.00064 31.6 0.5 27 163-189 150-176 (184)
473 2vn2_A DNAD, chromosome replic 24.3 1.4E+02 0.0047 25.2 6.0 48 143-190 29-77 (128)
474 3u2r_A Regulatory protein MARR 24.3 1.1E+02 0.0037 26.3 5.6 29 162-190 60-88 (168)
475 1xwr_A Regulatory protein CII; 24.2 33 0.0011 28.4 1.9 24 165-188 24-47 (97)
476 3jvd_A Transcriptional regulat 24.1 16 0.00055 35.5 0.0 24 164-187 6-29 (333)
477 2kfs_A Conserved hypothetical 24.1 33 0.0011 30.7 2.0 23 165-187 32-54 (148)
478 2of7_A Putative TETR-family tr 24.0 72 0.0025 29.4 4.6 38 149-187 53-91 (260)
479 3f6v_A Possible transcriptiona 23.9 52 0.0018 28.9 3.3 30 162-191 69-98 (151)
480 2wte_A CSA3; antiviral protein 23.9 67 0.0023 30.6 4.3 28 163-190 165-192 (244)
481 2gfn_A HTH-type transcriptiona 23.8 67 0.0023 28.4 4.2 39 147-186 12-51 (209)
482 3dbi_A Sugar-binding transcrip 23.8 17 0.00057 35.2 0.0 23 165-187 4-26 (338)
483 2di3_A Bacterial regulatory pr 23.8 58 0.002 30.2 3.8 29 161-189 24-53 (239)
484 3g5g_A Regulatory protein; tra 23.7 45 0.0015 26.9 2.7 38 163-205 40-77 (99)
485 3egq_A TETR family transcripti 23.7 39 0.0014 28.5 2.5 38 149-187 9-47 (170)
486 1k78_A Paired box protein PAX5 23.6 1.8E+02 0.0062 24.5 6.8 30 162-191 106-145 (149)
487 4hku_A LMO2814 protein, TETR t 23.6 41 0.0014 29.1 2.6 38 147-185 10-48 (178)
488 2g7g_A RHA04620, putative tran 23.6 89 0.003 28.1 5.0 42 144-187 11-52 (213)
489 1jye_A Lactose operon represso 23.5 17 0.00058 35.6 0.0 25 164-188 3-27 (349)
490 3e6m_A MARR family transcripti 23.4 54 0.0018 28.1 3.3 27 164-190 67-93 (161)
491 3cec_A Putative antidote prote 23.4 46 0.0016 26.6 2.7 38 163-205 30-67 (104)
492 1b0n_A Protein (SINR protein); 23.4 46 0.0016 26.6 2.7 39 163-205 13-51 (111)
493 2r0q_C Putative transposon TN5 23.3 1.5E+02 0.0053 26.8 6.6 26 163-188 174-199 (209)
494 3f3x_A Transcriptional regulat 23.3 68 0.0023 26.7 3.9 25 166-190 52-76 (144)
495 3u2r_A Regulatory protein MARR 23.3 90 0.0031 26.8 4.8 40 51-90 50-89 (168)
496 3e3m_A Transcriptional regulat 23.0 18 0.0006 35.5 0.0 25 164-188 12-36 (355)
497 3ctp_A Periplasmic binding pro 23.0 18 0.0006 35.0 0.0 24 165-188 3-26 (330)
498 3hsr_A HTH-type transcriptiona 23.0 45 0.0015 27.9 2.6 29 162-190 48-76 (140)
499 3oop_A LIN2960 protein; protei 22.9 2.3E+02 0.0077 23.2 7.2 28 163-190 50-77 (143)
500 1stz_A Heat-inducible transcri 22.8 53 0.0018 32.9 3.5 30 161-190 33-64 (338)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=2.5e-43 Score=363.32 Aligned_cols=197 Identities=14% Similarity=0.243 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHH
Q 010925 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 80 (497)
Q Consensus 1 L~~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~L 80 (497)
|++|++.|.+||++|+|| ++|+++|..||+++++.++++||+.++++|||||+|||++++|+||+||+++++|++++|
T Consensus 126 L~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~kei 203 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp TTHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHH
Confidence 678999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccc-------ccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHH
Q 010925 81 GAVYLQLCQVLYIADESN-------VLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 153 (497)
Q Consensus 81 gr~yk~L~~~L~i~~~~~-------~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAa 153 (497)
|++|+.|.+.|++..... ..+.++|+.||+|||+.|+ ++.+|.+.|++|+++|.++|+++||+|.||||||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~--l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAa 281 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG--LPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVS 281 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhcccccCCChHHHHHHH
Confidence 999999999999752110 0224899999999999999 7899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 010925 154 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 202 (497)
Q Consensus 154 LylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~ 202 (497)
||+|++++|+++|+++|++++|||++|||+||+||.+. ...|.+.+|.
T Consensus 282 IylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~-~~~l~~~~~~ 329 (345)
T 4bbr_M 282 IYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEH-RDKLVDPQLI 329 (345)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH-HHhhcCHHHh
Confidence 99999999999999999999999999999999999765 4556555553
No 2
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=3.3e-40 Score=314.32 Aligned_cols=183 Identities=27% Similarity=0.478 Sum_probs=176.1
Q ss_pred ChHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHH
Q 010925 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 80 (497)
Q Consensus 1 L~~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~L 80 (497)
|++|++.|.++|++|+|| +.++++|..+|+++++.++++||++..++|||||+|||+++.|++++||++++++++++|
T Consensus 9 l~~a~~~I~~~~~~L~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i 86 (200)
T 1ais_B 9 LAFALSELDRITAQLKLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEI 86 (200)
T ss_dssp HHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHH
Confidence 478999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHh
Q 010925 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 160 (497)
Q Consensus 81 gr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~ 160 (497)
+++|+.|.+.|+++.+++ .++|+.||.|||+.|+ ++.++.+.|++|++.+.++|++.||+|.+|||||||+||++
T Consensus 87 ~~~~~~l~~~L~~~~~~~---~~~p~~~i~r~~~~L~--l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~ 161 (200)
T 1ais_B 87 GRSYRFIARNLNLTPKKL---FVKPTDYVNKFADELG--LSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLL 161 (200)
T ss_dssp HHHHHHHHHHTTCCTTTT---CCCGGGGHHHHHHHHT--CCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcC---CCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHH
Confidence 999999999999876531 2799999999999999 78999999999999999999999999999999999999999
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+|+++|+++|+.++||++.||++||++|.+
T Consensus 162 ~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~ 191 (200)
T 1ais_B 162 EGEKRTQREVAEVARVTEVTVRNRYKELVE 191 (200)
T ss_dssp TTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999964
No 3
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-41 Score=346.06 Aligned_cols=201 Identities=14% Similarity=0.230 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHH
Q 010925 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 80 (497)
Q Consensus 1 L~~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~L 80 (497)
|++|+..|+.+|++|+|| ++++++|..||+++++.++++||+.+.|+|||||+|||++++|+|++||++++++++++|
T Consensus 126 l~~a~~~I~~~~~~L~Lp--~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keI 203 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHHHTTCC--HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHH
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHH
Confidence 468999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc------------ccccccccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhH
Q 010925 81 GAVYLQLCQVLY------------IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSG 148 (497)
Q Consensus 81 gr~yk~L~~~L~------------i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~ 148 (497)
|++|+.|.+.|+ +..++ ++|+.||+|||+.|+ ++++|.+.|++|++.+.++|++.||+|.+
T Consensus 204 gr~~~~l~~~L~~~~~~~~~~~~~~~~~~-----~~p~~~i~Rf~~~L~--l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~ 276 (345)
T 3k7a_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSG-----AQNLTYIPRFCSHLG--LPMQVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp HHHHHHHHHHHTCC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhccccccccccccCC-----CCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhchhcCCCHHH
Confidence 999999999998 55544 899999999999999 68899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHhhhc
Q 010925 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK-KELHEG 211 (497)
Q Consensus 149 IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~-~dle~e 211 (497)
|||||||||++++|+++|+++|+.++||+++||++||+||.+.. ..|+++||.... -+|+..
T Consensus 277 IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~-~~l~~~~~~~~~~~~~~~l 339 (345)
T 3k7a_M 277 IAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHR-DKLVDPQLIANGVVSLDNL 339 (345)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HhhCCHHHhhcccCCHhhC
Confidence 99999999999999999999999999999999999999998765 788888888331 145543
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=3.8e-37 Score=294.87 Aligned_cols=181 Identities=22% Similarity=0.364 Sum_probs=176.2
Q ss_pred ChHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHH
Q 010925 1 MEKAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYEL 80 (497)
Q Consensus 1 L~~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~L 80 (497)
|++|++.|+++|.+|+|| +.++++|..+|++++..++++|+++..|+|||||+|||.++.|++++||+.++++++++|
T Consensus 5 l~~a~~~I~~~~~~L~L~--~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i 82 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLP--RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 82 (207)
T ss_dssp HHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHH
Confidence 578999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHh
Q 010925 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 160 (497)
Q Consensus 81 gr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~ 160 (497)
+++|+.|.+.|+++.++ .+|..||.||++.|+ ++.++...|+.+++.+.+.|++.||+|.+|||||||+|+++
T Consensus 83 ~~~~~~ll~~L~~~l~~-----~~p~~~l~r~~~~l~--l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~ 155 (207)
T 1c9b_A 83 GRCFKLILKALETSVDL-----ITTGDFMSRFCSNLC--LPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQA 155 (207)
T ss_dssp HHHHHHHHHHTTCCCCC-----CCTHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCcCc-----CCHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHH
Confidence 99999999999998766 899999999999999 78999999999999999999999999999999999999999
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+|.++|+++|+.++||++.||+++|++|.+
T Consensus 156 ~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~ 185 (207)
T 1c9b_A 156 SAEKRTQKEIGDIAGVADVTIRQSYRLIYP 185 (207)
T ss_dssp SSSCCCHHHHHHHHTCCHHHHHHHHHHHGG
T ss_pred HCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999975
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.92 E-value=4.8e-24 Score=207.94 Aligned_cols=179 Identities=14% Similarity=0.136 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCC-CChHHHHHHHHHHHHHhcCCCCCHHHHHHHh--------
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG-RRTEQVQASCLYLACRQKSKPFLLIDFSNYL-------- 73 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rG-R~~~~VaAACLYiACR~e~~prtL~DIa~v~-------- 73 (497)
.+.+.|.++|..|+|| +.++.+|..||++++..+.+++ ++...|++||||+|||.++.|+++.||+.++
T Consensus 30 ~~~~~i~~v~~~l~L~--~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 30 YQWKVVQTFGDRLRLR--QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 5788999999999999 9999999999999999998888 9999999999999999999999999999886
Q ss_pred CcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHH
Q 010925 74 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 153 (497)
Q Consensus 74 ~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAa 153 (497)
.++..+|++.++.|.+.|+++..+ .+|..||.||+..++ .+.++.+.|+.+++.+..++++.|++|++||+||
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~~l~~~~~~~~--~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAa 180 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAFLIV-----HHPYTSLEQAFHDGI--INQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 180 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCCC-----CCTHHHHHHHHHTTS--SCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHCCCcEEe-----cChHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHH
Confidence 578999999999999999998765 899999999999987 7899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 154 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 154 LylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
||+|++++|.+.+ .+.....||++.+|+.+++++.+.
T Consensus 181 i~lA~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~l 217 (235)
T 1zp2_A 181 LLISCCNDENTIP-KLLDLIKSTDAFKVILCVQRIISI 217 (235)
T ss_dssp HHHHHTSCTTHHH-HHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCC-CCcchhhcCCHHHHHHHHHHHHHH
Confidence 9999999987643 233444499999999999999653
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.86 E-value=7.7e-21 Score=187.21 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-------
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------- 75 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~v------- 75 (497)
.+.+.|.+++..|+|| +.+..+|..||++++..+.+++++...|++||||+|||.++.|+++.||..+++.
T Consensus 43 ~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~ 120 (258)
T 2i53_A 43 EGARFIFDVGTRLGLH--YDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQF 120 (258)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhh
Confidence 4678999999999999 9999999999999999999999999999999999999999999999999976431
Q ss_pred ------ChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCH----HHHHHHHHHHHHhccccccCCCC
Q 010925 76 ------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK----KVCDTARDILASMKRDWITTGRK 145 (497)
Q Consensus 76 ------sv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~----~V~~~A~~Lv~~~~~~~l~~GR~ 145 (497)
+..+|.+..+.|.+.|+++..+ .+|..||.+|+..|+ .+. .+...|+.+++.+..++++.|.+
T Consensus 121 ~~~~~~~~~~i~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~--~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~ 193 (258)
T 2i53_A 121 GQFGDDPKEEVMVLERILLQTIKFDLQV-----EHPYQFLLKYAKQLK--GDKNKIQKLVQMAWTFVNDSLCTTLSLQWE 193 (258)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTBC--SCHHHHHHHHHHHHHHHHHHTTTTGGGTSC
T ss_pred hhhhhhHHHHHHHHHHHHHHHCCCceec-----cChHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHHHHcCCchhccC
Confidence 2568999999999999998766 789999999999998 344 79999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHhh-------HHHH--hccCHHHHHHHHHHHhcC
Q 010925 146 PSGLCGAALYVSALTHGLKFSKSD-------IVKI--VHICEATLMKRLIEFENT 191 (497)
Q Consensus 146 P~~IaaAaLylAar~~g~~~t~~e-------Ia~v--~~Vse~TIrkr~kE~~~t 191 (497)
|+.||+||||+|++++|.+++..+ +... .||++.+|+.+++++.+.
T Consensus 194 Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~l 248 (258)
T 2i53_A 194 PEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDL 248 (258)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998876543 2243 499999999999999764
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.86 E-value=3e-20 Score=183.12 Aligned_cols=180 Identities=14% Similarity=0.078 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-------
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------- 75 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~v------- 75 (497)
.+.+.|.+++..|+|| +.+..+|..||++++..+.+++++...|++||||+||+.++.|+++.||..+++.
T Consensus 33 ~~~~~i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~ 110 (257)
T 2ivx_A 33 QAANLIQEMGQRLNVS--QLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEP 110 (257)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCC
Confidence 4678899999999999 9999999999999999999999999999999999999999999999999877531
Q ss_pred ----C-------hHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhc-cccccCC
Q 010925 76 ----N-------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK-RDWITTG 143 (497)
Q Consensus 76 ----s-------v~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~-~~~l~~G 143 (497)
+ ..+|.+..+.|++.|+++..+ .+|..||.+|+..++ .+.++...|+.++.... ...++.+
T Consensus 111 ~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~--~~~~~~~~A~~~~~~sl~~~~~~l~ 183 (257)
T 2ivx_A 111 LLDTKCDAYLQQTRELVILETIMLQTLGFEITI-----EHPHTDVVKCTQLVR--ASKDLAQTSYFMATNSLHLTTFCLQ 183 (257)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHCCGGGT
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHcccceEe-----eCcHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhcccHHHc
Confidence 1 678999999999999998776 789999999999998 67899999999997765 4667889
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCHh----hHHHHh--ccCHHHHHHHHHHHhcC
Q 010925 144 RKPSGLCGAALYVSALTHGLKFSKS----DIVKIV--HICEATLMKRLIEFENT 191 (497)
Q Consensus 144 R~P~~IaaAaLylAar~~g~~~t~~----eIa~v~--~Vse~TIrkr~kE~~~t 191 (497)
.+|+.||+||||+|++++|.++++. .+...+ +|++.+|+.++++|.+.
T Consensus 184 ~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~ 237 (257)
T 2ivx_A 184 YKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI 237 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887653 366644 79999999999999754
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=182.30 Aligned_cols=177 Identities=10% Similarity=0.063 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCC-CHHHHHHHhC-------
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF-LLIDFSNYLN------- 74 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~pr-tL~DIa~v~~------- 74 (497)
.+.+.|.++|..|+|| +.++.+|..||++++..+.+++++...|++||||+||+.+++|+ ++.||..++.
T Consensus 45 ~~~~~I~~v~~~l~L~--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~ 122 (285)
T 3rgf_B 45 FFTNVIQALGEHLKLR--QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF 122 (285)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccc
Confidence 3678999999999999 99999999999999999999999999999999999999999988 7889887642
Q ss_pred ---------cChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCC
Q 010925 75 ---------INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRK 145 (497)
Q Consensus 75 ---------vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~ 145 (497)
....+|.+..+.|++.|+++..+ .+|..||.+|+..|+ .+..+.+.|+.+++.+..+.++.+..
T Consensus 123 ~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~fL~~~~~~l~--~~~~~~~~A~~~l~~sl~t~~~l~~~ 195 (285)
T 3rgf_B 123 SYAFPKEFPYRMNHILECEFYLLELMDCCLIV-----YHPYRPLLQYVQDMG--QEDMLLPLAWRIVNDTYRTDLCLLYP 195 (285)
T ss_dssp TTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSSHHHHSC
T ss_pred cccCchhhHHHHHHHHHHHHHHHHHcCCCeEe-----CChHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHccChhhccC
Confidence 46689999999999999998765 789999999999998 68899999999999998888899999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 146 P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|+.||+||||+|+++.|.+. ..+...++|++..|...+++|.+
T Consensus 196 Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il~ 238 (285)
T 3rgf_B 196 PFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVILK 238 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998765 57888999999999999999864
No 9
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.82 E-value=2.4e-19 Score=178.41 Aligned_cols=177 Identities=11% Similarity=0.095 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cChHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYEL 80 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~-prtL~DIa~v~~--vsv~~L 80 (497)
..+.|.+++..++|+ ..+...|..+++++.....+.+++...+++||+|||||.++. |.++.||..+++ ++..+|
T Consensus 41 lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI 118 (269)
T 2b9r_A 41 LIDWLVQVQMKFRLL--QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQI 118 (269)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHH
T ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHH
Confidence 457799999999999 999999999999999999899999999999999999999877 899999999875 799999
Q ss_pred HHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHh
Q 010925 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 160 (497)
Q Consensus 81 gr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~ 160 (497)
.+..+.|.+.|+.+..+ .+|..|+.||+..++ .+..+...|+.+++....+..+.|.+|+.||+||||+|+++
T Consensus 119 ~~mE~~IL~~L~f~l~~-----~tp~~fl~~~~~~~~--~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~ 191 (269)
T 2b9r_A 119 RQMEMKILRALNFGLGR-----PLPLHFLRRASKIGE--VDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKI 191 (269)
T ss_dssp HHHHHHHHHHTTSCCCC-----CCHHHHHHHHHHSSC--CCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCC-----CCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999998765 789999999999888 67889999999999988888889999999999999999999
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
.|.+...+++..++|+++.+|+.+++++.
T Consensus 192 l~~~~w~~~l~~~tg~~~~~l~~~~~~l~ 220 (269)
T 2b9r_A 192 LDNGEWTPTLQHYLSYTEESLLPVMQHLA 220 (269)
T ss_dssp HTCCCSCTTHHHHSCCCSSTTTTHHHHHH
T ss_pred hCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 99988899999999999999999999985
No 10
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.80 E-value=2.4e-19 Score=185.54 Aligned_cols=181 Identities=14% Similarity=0.077 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-------
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------- 75 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~v------- 75 (497)
.+.+.|.+++..|+|| +.++.+|..||++++..+.+++++...|++|||||||+.++.|+++.||..++..
T Consensus 40 ~~v~wI~ev~~~l~L~--~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~ 117 (358)
T 2pk2_A 40 QAANLLQDMGQRLNVS--QLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQES 117 (358)
T ss_dssp HHHHHHHHHHTTTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSC
T ss_pred HHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccccc
Confidence 4678899999999999 9999999999999999999999999999999999999999999999999876521
Q ss_pred -----------ChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhc-cccccCC
Q 010925 76 -----------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK-RDWITTG 143 (497)
Q Consensus 76 -----------sv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~-~~~l~~G 143 (497)
...+|.+..+.|++.|+++..+ .+|..||.+|+..|+ .+.++...|+.++.... ...++.+
T Consensus 118 ~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v-----~~P~~fL~~~~~~l~--~~~~l~~~A~~ll~~sl~~t~l~l~ 190 (358)
T 2pk2_A 118 LPDTRSEAYLQQVQDLVILESIILQTLGFELTI-----DHPHTHVVKCTQLVR--ASKDLAQTSYFMATNSLHLTTFSLQ 190 (358)
T ss_dssp CCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCC-----CCTTHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCGGGT
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHcCCceeC-----CCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCcchhc
Confidence 2567888999999999998776 799999999999998 67899999999998765 3556788
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCHh----hHHHHh--ccCHHHHHHHHHHHhcCC
Q 010925 144 RKPSGLCGAALYVSALTHGLKFSKS----DIVKIV--HICEATLMKRLIEFENTD 192 (497)
Q Consensus 144 R~P~~IaaAaLylAar~~g~~~t~~----eIa~v~--~Vse~TIrkr~kE~~~t~ 192 (497)
.+|+.||+||||+|++++++++++. .+..++ +|++.+|+.++++|.+..
T Consensus 191 y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 191 YTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQIL 245 (358)
T ss_dssp SCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887653 366664 789999999999987644
No 11
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.80 E-value=1.1e-18 Score=172.64 Aligned_cols=180 Identities=15% Similarity=0.096 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cChHH
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 79 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~-prtL~DIa~v~~--vsv~~ 79 (497)
.+.+.|.+++..++|+ ..+.-.|..++++.....-+..++...+++||||||||.++. |.++.||..+++ ++..+
T Consensus 41 ~lvdwl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~ 118 (260)
T 2cch_B 41 ILVDWLVEVGEEYKLQ--NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHH
Confidence 3567899999999999 999999999999999887778888999999999999999988 999999999874 88999
Q ss_pred HHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccc-cCCCChhHHHHHHHHHHH
Q 010925 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI-TTGRKPSGLCGAALYVSA 158 (497)
Q Consensus 80 Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l-~~GR~P~~IaaAaLylAa 158 (497)
|.+..+.|.+.|+.+..+ ++|..|+.+|+..++. ....+...|+.+++....+.. +.|.+|+.||+||||+|+
T Consensus 119 i~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~l~~-~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~ 192 (260)
T 2cch_B 119 VLRMEHLVLKVLTFDLAA-----PTVNQFLTQYFLHQQP-ANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLAL 192 (260)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHTTCSS-CCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999998766 7899999999999983 134888999999988665554 889999999999999999
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 159 LTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 159 r~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+..|.+....++..++|+++.+|+.+++++.+
T Consensus 193 ~~~~~~~w~~~l~~~~g~~~~~i~~~~~~l~~ 224 (260)
T 2cch_B 193 YTVTGQSWPESLIRKTGYTLESLKPCLMDLHQ 224 (260)
T ss_dssp HHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHhCCCcchHHHHHHhCcCHHHHHHHHHHHHH
Confidence 99988888899999999999999999999864
No 12
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.78 E-value=5.4e-18 Score=168.60 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cChHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYEL 80 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~-prtL~DIa~v~~--vsv~~L 80 (497)
..+.|.+++..++++ ..+.-.|..++.++....-+..++...+++||+|||||.++. |+++.||+.+++ ++..+|
T Consensus 60 lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI 137 (271)
T 2w96_A 60 VATWMLEVCEEQKCE--EEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEEL 137 (271)
T ss_dssp HHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHHHHHHHCCc--hhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHH
Confidence 456788999999999 899999999999999988888899999999999999999988 999999998864 799999
Q ss_pred HHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHH----HHHHHHHHHHhccccccCCCChhHHHHHHHHH
Q 010925 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV----CDTARDILASMKRDWITTGRKPSGLCGAALYV 156 (497)
Q Consensus 81 gr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V----~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLyl 156 (497)
.+..+.|.+.|+++..+ ++|..|+.+|+..|+ .+.+. ...|..++..+..+..+.|.+|+.||+||||+
T Consensus 138 ~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~l~--~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~l 210 (271)
T 2w96_A 138 LQMELLLVNKLKWNLAA-----MTPHDFIEHFLSKMP--EAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVA 210 (271)
T ss_dssp HHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 99999999999998766 889999999999998 44443 35677777766666667799999999999999
Q ss_pred HHHhcCC---------CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 157 SALTHGL---------KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 157 Aar~~g~---------~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|+...|. ..+++.++.++||++.+|+.+++++.+
T Consensus 211 A~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~ 253 (271)
T 2w96_A 211 AVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEA 253 (271)
T ss_dssp HHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9987753 124678999999999999999999964
No 13
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.76 E-value=1.7e-17 Score=169.35 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHcC--CCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcC----
Q 010925 3 KAFDDMRQMKNALN--IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN---- 76 (497)
Q Consensus 3 ~a~~~I~~ia~~L~--Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vs---- 76 (497)
.+...|.++|..|+ || +.++.+|..||++++..+.++++++..|++||||+||+.++.|+++.||+.++..+
T Consensus 59 ~~~~~I~ev~~~l~~~Lp--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~ 136 (323)
T 1jkw_A 59 YYEKRLLEFCSVFKPAMP--RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQ 136 (323)
T ss_dssp HHHHHHHHHHHHCTTTCC--HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhh
Confidence 46688999999999 99 99999999999999999999999999999999999999999999999998877655
Q ss_pred ---hHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhh-----CCCCCHHHHHHHHHHHHHhccccccCCCChhH
Q 010925 77 ---VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-----LPGGNKKVCDTARDILASMKRDWITTGRKPSG 148 (497)
Q Consensus 77 ---v~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L-----~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~ 148 (497)
...|.+....|++.|+++..+ .+|..||.+|+..| +.+.+..+...|+.+++.+....++.+..|+.
T Consensus 137 ~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~ 211 (323)
T 1jkw_A 137 EKALEQILEYELLLIQQLNFHLIV-----HNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQ 211 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEc-----CChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHH
Confidence 578999999999999998766 89999999999877 22245678899999999988877888999999
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 010925 149 LCGAALYVSALTHGLKFS 166 (497)
Q Consensus 149 IaaAaLylAar~~g~~~t 166 (497)
||+||||+|++.+|.+++
T Consensus 212 IAaAai~lA~~~~~~~~~ 229 (323)
T 1jkw_A 212 IALTAILSSASRAGITME 229 (323)
T ss_dssp HHHHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHHHcCCChH
Confidence 999999999999998765
No 14
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=99.72 E-value=8.9e-19 Score=139.12 Aligned_cols=53 Identities=38% Similarity=0.590 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCChHHHhhcCCCHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 010925 338 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 390 (497)
Q Consensus 338 ~~~~~~~~~~lsdiDD~Eid~~iL~eeE~~~K~~iW~~~N~dyL~eq~~Ke~~ 390 (497)
..+.++++++|||+||+|||+|||||+||++|++||+++|+|||++|++|+++
T Consensus 18 l~~~~dd~~~lsDiDD~Eid~yiLteeEv~~K~~iW~~~N~dyL~eq~~K~~k 70 (72)
T 1ngm_B 18 LSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLK 70 (72)
T ss_dssp HTTSCCCSSCCTTSCCSSGGGSSCCHHHHHHHHHHHHHHTTTHHHHHHHTTTT
T ss_pred HHhccCCccccccCCHHHHHHhhCCHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 34566889999999999999999999999999999999999999999999864
No 15
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.72 E-value=1.2e-16 Score=157.78 Aligned_cols=180 Identities=13% Similarity=0.041 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cChHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYEL 80 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~-prtL~DIa~v~~--vsv~~L 80 (497)
..+.|.+++..++++ ..+.-.|..+++++...+.+++++...+++||+||||+.+.. |.++.||+.+++ ++..+|
T Consensus 54 lvdwl~ev~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 131 (257)
T 1g3n_C 54 LGTWMFSVCQEYNLE--PNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQEL 131 (257)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHH
Confidence 457789999999999 999999999999999999899999999999999999998765 999999998865 789999
Q ss_pred HHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCC--CHHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHHH
Q 010925 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG--NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 158 (497)
Q Consensus 81 gr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~--~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAa 158 (497)
.+..+.|.+.|+.+..+ +.|..|+.+|+..++.+. ...+...|..++.....+..+.+.+|+.||+||||+|.
T Consensus 132 ~~mE~~iL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~ 206 (257)
T 1g3n_C 132 IDQEKELLEKLAWRTEA-----VLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLV 206 (257)
T ss_dssp HHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHH
Confidence 99999999999998766 789999999999997211 12345668888877777777889999999999999999
Q ss_pred HhcCC------CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 159 LTHGL------KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 159 r~~g~------~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+..|. +.....++.++|+++.+|+.+++.+.+
T Consensus 207 ~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~ 244 (257)
T 1g3n_C 207 PANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILT 244 (257)
T ss_dssp CGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 98875 345788999999999999999999853
No 16
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.72 E-value=2.7e-16 Score=154.89 Aligned_cols=180 Identities=12% Similarity=0.140 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcC-CCCCHHHHHHHhC--cChHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVYEL 80 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~-~prtL~DIa~v~~--vsv~~L 80 (497)
..+.|.+++..++++ ..+.-.|..++.++...+.+++++...+++||+||||+.+. .|.++.||..+++ ++..+|
T Consensus 55 lvdwl~~v~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i 132 (254)
T 2f2c_A 55 LLTWMHLLCESFELD--KSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLEL 132 (254)
T ss_dssp HHHHHHHHHHHTTCC--TTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHH
T ss_pred HHHHHHHHHHHHCCC--chHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHH
Confidence 457789999999999 89999999999999999999999999999999999999965 6999999987754 789999
Q ss_pred HHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCC-C-HHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHHH
Q 010925 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 158 (497)
Q Consensus 81 gr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~-~-~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAa 158 (497)
.+..+.|.+.|+.+..+ +.|..|+.+|+..++.+. . ..+...|..++.....+..+.+.+|+.||+||||+|.
T Consensus 133 ~~mE~~IL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~ 207 (254)
T 2f2c_A 133 INQEKDILEALKWDTEA-----VLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTI 207 (254)
T ss_dssp HHHHHHHHHHTTTCCCC-----CCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHH
Confidence 99999999999998766 789999999999997211 1 2245668888887777777889999999999999999
Q ss_pred HhcC-CCCC----HhhHHHHhccCHHHHHHHHHHHhc
Q 010925 159 LTHG-LKFS----KSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 159 r~~g-~~~t----~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+..+ .+.+ +..++.++|+++.+|+.+++.+.+
T Consensus 208 ~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~ 244 (254)
T 2f2c_A 208 ETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSE 244 (254)
T ss_dssp HTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9863 3455 889999999999999999999854
No 17
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.67 E-value=1.7e-15 Score=151.67 Aligned_cols=172 Identities=13% Similarity=0.078 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHhcCC-CCCHHHHHHHhC--cChHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR-NFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYE 79 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~-~~~rGR~~~~VaAACLYiACR~e~~-prtL~DIa~v~~--vsv~~ 79 (497)
..+.|.+++..++++ ..+.-.|..++.+.... +.++++....+++||+|||||.++. |.++.||+.+++ ++..+
T Consensus 53 lv~wl~~v~~~~~l~--~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 53 LLDWLMEVCEVYKLH--RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHTTCB--HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 456789999999999 99999999999999986 6788999999999999999999876 999999998874 78999
Q ss_pred HHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCC---------CHHHHHHHHHHHHHhccccccCCCChhHHH
Q 010925 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG---------NKKVCDTARDILASMKRDWITTGRKPSGLC 150 (497)
Q Consensus 80 Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~---------~~~V~~~A~~Lv~~~~~~~l~~GR~P~~Ia 150 (497)
|.+..+.|.+.|+.+..+ +.|..|+.+|+..++... +......+..++.....+.-+.|.+|+.||
T Consensus 131 i~~mE~~IL~~L~~~l~~-----~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iA 205 (283)
T 1w98_B 131 ILTMELMIMKALKWRLSP-----LTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILA 205 (283)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHH
T ss_pred HHHHHHHHHHHcCCcCCC-----CCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHH
Confidence 999999999999998766 789999999999886211 122333455666666555567899999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 151 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 151 aAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
+||||+|+ .++.+..++|+++.+|+.+++.+.
T Consensus 206 aAai~la~-------~~~~l~~~tg~~~~~i~~c~~~l~ 237 (283)
T 1w98_B 206 ASALYHFS-------SSELMQKVSGYQWCDIENCVKWMV 237 (283)
T ss_dssp HHHHHHTS-------CHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-------ChHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999985 378899999999999999999994
No 18
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.63 E-value=9.5e-15 Score=147.98 Aligned_cols=181 Identities=15% Similarity=0.093 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhc-CCCCCHHHHHHHhC--cChHH
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLN--INVYE 79 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e-~~prtL~DIa~v~~--vsv~~ 79 (497)
...+.|.+++..++|+ ..+.-.|..|++++...+.+.+.....++++|+||||+.+ ..|.++.||..+++ ++..+
T Consensus 73 ~lvdwl~ev~~~~~l~--~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~ 150 (306)
T 3g33_B 73 MLAYWMLEVCEEQRCE--EEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQ 150 (306)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHHHHhCCc--HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHH
Confidence 3567899999999999 8999999999999999888899999999999999999985 56889999998875 78999
Q ss_pred HHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCC--CCHHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHH
Q 010925 80 LGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG--GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 157 (497)
Q Consensus 80 Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~--~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylA 157 (497)
|.+..+.|.+.|+.+..+ ..|..||.+|+..|+.. ....+...|..++.....+..+.+.+|+.||+||||+|
T Consensus 151 i~~mE~~IL~~L~f~l~~-----~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA 225 (306)
T 3g33_B 151 LRDWEVLVLGKLKWDLAA-----VIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAA 225 (306)
T ss_dssp HHHHHHHHHHHTTTCCCC-----CCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 999999999999998766 78999999999999721 12335677888888777777788999999999999999
Q ss_pred HHhcCCCCC-----HhhHHHHhccCHHHHHHHHHHHhc
Q 010925 158 ALTHGLKFS-----KSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 158 ar~~g~~~t-----~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+..+.... ...+..++|+++.+|+.+++.+.+
T Consensus 226 ~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~ 263 (306)
T 3g33_B 226 VQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEA 263 (306)
T ss_dssp HHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999885443 257789999999999999999864
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.45 E-value=3.1e-13 Score=127.96 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~ 83 (497)
...+|.++|+.|+|+ ..+.+.|..+++.+.+.+++.||++..+||||||+|||.+|.|+++.||+.+++|+..+|+++
T Consensus 108 p~~~i~r~~~~L~l~--~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~ 185 (200)
T 1ais_B 108 PTDYVNKFADELGLS--EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNR 185 (200)
T ss_dssp GGGGHHHHHHHHTCC--HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHH
Confidence 356899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccc
Q 010925 84 YLQLCQVLYIADES 97 (497)
Q Consensus 84 yk~L~~~L~i~~~~ 97 (497)
|+.|.+.|++..+|
T Consensus 186 ~~~l~~~l~~~~~~ 199 (200)
T 1ais_B 186 YKELVEKLKIKVPI 199 (200)
T ss_dssp HHHHHHHHTCCCCC
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999987543
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.25 E-value=3e-11 Score=115.03 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHH
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 82 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr 82 (497)
.....|.++++.|+++ ..+...|..+++.+...++..||++..+||||||+|||..|.++++.+|+.+++|+..+|++
T Consensus 101 ~p~~~l~r~~~~l~l~--~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~ 178 (207)
T 1c9b_A 101 TTGDFMSRFCSNLCLP--KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQ 178 (207)
T ss_dssp CTHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHH
Confidence 3568899999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccc
Q 010925 83 VYLQLCQVLYIADE 96 (497)
Q Consensus 83 ~yk~L~~~L~i~~~ 96 (497)
+|+.|.+.++...|
T Consensus 179 ~~~~l~~~l~~~~p 192 (207)
T 1c9b_A 179 SYRLIYPRAPDLFP 192 (207)
T ss_dssp HHHHHGGGHHHHSC
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999987653
No 21
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.05 E-value=7.9e-09 Score=101.80 Aligned_cols=175 Identities=9% Similarity=0.023 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcC-CCCCHHHHHHHhC--cChHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVYEL 80 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~-~prtL~DIa~v~~--vsv~~L 80 (497)
..+.|-+++..++|+ ..+.-.|..++.+.....-+.......++++|+||||+.+. .|.++.++...++ .+..+|
T Consensus 52 lvdWl~ev~~~~~l~--~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i 129 (252)
T 1f5q_B 52 LTTWMFCVCKDLRQD--NNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKL 129 (252)
T ss_dssp HHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHH
Confidence 456789999999999 89999999999999988777777889999999999999765 5889999998764 688999
Q ss_pred HHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCH----HHHHHHHHHHHHhccccccCCCChhHHHHHHHHH
Q 010925 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK----KVCDTARDILASMKRDWITTGRKPSGLCGAALYV 156 (497)
Q Consensus 81 gr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~----~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLyl 156 (497)
.+.-+.|.+.|+.+..+ +.|..|+.+|...++ .+. .+...|..++.....+.-+.+-+|+-||+||+++
T Consensus 130 ~~mE~~IL~~L~w~l~~-----pTp~~FL~~~l~~~~--~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~ 202 (252)
T 1f5q_B 130 LTLEVKSLDTLSWVADR-----CLSTDLICYILHIMH--APREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHL 202 (252)
T ss_dssp HHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCccCC-----CCHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHH
Confidence 99999999999988765 789999999999987 333 3445666666666555556789999999999644
Q ss_pred HHHhcCCCCC----HhhHHHHhccCHHHHHHHHHHHh
Q 010925 157 SALTHGLKFS----KSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 157 Aar~~g~~~t----~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
+. .+...+ ...+...+|++...|+.+++.+.
T Consensus 203 ~l--~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~ 237 (252)
T 1f5q_B 203 TM--NQKYDYYENRIDGVCKSLYITKEELHQCCDLVD 237 (252)
T ss_dssp HH--TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred Hh--ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33 222222 34577889999999998887775
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.99 E-value=4.4e-11 Score=123.07 Aligned_cols=102 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~ 83 (497)
...+|.++|+.|+|+ ..+...|.++.+.+.+.+++.||++..+||||||+||+.+|.+++++||+++++|+..+|.+.
T Consensus 235 p~~~i~Rf~s~L~l~--~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~r 312 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSG 312 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHH
Confidence 346899999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccCCccchHHHHHhhh
Q 010925 84 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 116 (497)
Q Consensus 84 yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L 116 (497)
|+.|...++.= + |..|+..+...+
T Consensus 313 ykel~~~~~~l--------~-~~~~~~~~~~~~ 336 (345)
T 4bbr_M 313 YKILYEHRDKL--------V-DPQLIANGVVSL 336 (345)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHhh--------c-CHHHhhcccCch
Confidence 99999988641 2 455666654333
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.2e-09 Score=112.37 Aligned_cols=86 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHH
Q 010925 5 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY 84 (497)
Q Consensus 5 ~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~y 84 (497)
..+|.++|+.|+|+ ..+...|..|...+...+++.||++..+||||||+||+.++.++++++|+.+++|+..+|...|
T Consensus 236 ~~~i~Rf~~~L~l~--~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~y 313 (345)
T 3k7a_M 236 LTYIPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 57889999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 010925 85 LQLCQVLY 92 (497)
Q Consensus 85 k~L~~~L~ 92 (497)
+.|...+.
T Consensus 314 kel~~~~~ 321 (345)
T 3k7a_M 314 KILYEHRD 321 (345)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99998774
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.52 E-value=0.00035 Score=67.30 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=59.9
Q ss_pred chHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCC-CChhHHHHHHHHHHHHhcCCCCCHhhHHHHh
Q 010925 107 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG-RKPSGLCGAALYVSALTHGLKFSKSDIVKIV 174 (497)
Q Consensus 107 ~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~G-R~P~~IaaAaLylAar~~g~~~t~~eIa~v~ 174 (497)
.+|.+++..|+ ++..+..+|..+++++.....+.| ++|..|++||||+||++.+..+++++|+.++
T Consensus 33 ~~i~~v~~~l~--L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~ 99 (235)
T 1zp2_A 33 KVVQTFGDRLR--LRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEA 99 (235)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHH
Confidence 47888999998 899999999999999876666677 9999999999999999999999999999876
No 25
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=97.15 E-value=0.00092 Score=65.41 Aligned_cols=89 Identities=8% Similarity=-0.060 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH-hCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAV-ARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 82 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~-~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr 82 (497)
.+..|.+++..++++. ..+...|..+...+. +.+..-|.++..+||||||+|++..+.|....+++.++|++..+|..
T Consensus 139 p~~fl~~~~~~l~~~~-~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~ 217 (260)
T 2cch_B 139 VNQFLTQYFLHQQPAN-CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKP 217 (260)
T ss_dssp HHHHHHHHHTTCSSCC-HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHH
Confidence 5678999999999982 278888888888866 33425689999999999999999887788888999999999999999
Q ss_pred HHHHHHHHhcc
Q 010925 83 VYLQLCQVLYI 93 (497)
Q Consensus 83 ~yk~L~~~L~i 93 (497)
+++.|...+..
T Consensus 218 ~~~~l~~~~~~ 228 (260)
T 2cch_B 218 CLMDLHQTYLK 228 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 26
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=97.15 E-value=0.00052 Score=67.60 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~ 83 (497)
.+..|.+++..++++ ..+...|..+...+.....+-|.++..+||||||+|++..+.+....+++.++|++..+|..+
T Consensus 138 p~~fl~~~~~~~~~~--~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~ 215 (269)
T 2b9r_A 138 PLHFLRRASKIGEVD--VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPV 215 (269)
T ss_dssp HHHHHHHHHHSSCCC--HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTH
T ss_pred HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHH
Confidence 567899999999999 889999999998888666667899999999999999999888777888999999999999999
Q ss_pred HHHHHHHhc
Q 010925 84 YLQLCQVLY 92 (497)
Q Consensus 84 yk~L~~~L~ 92 (497)
++.|.+.+.
T Consensus 216 ~~~l~~~~~ 224 (269)
T 2b9r_A 216 MQHLAKNVV 224 (269)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988664
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.94 E-value=0.0019 Score=64.24 Aligned_cols=86 Identities=12% Similarity=0.146 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 83 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~ 83 (497)
.++.|.+++..|+++ ..+...|..|...+......-+..+..+||||||+|++..+.+. ......++++..+|..+
T Consensus 157 P~~fL~~~~~~l~~~--~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~ 232 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQE--DMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEI 232 (285)
T ss_dssp SHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHH
T ss_pred hHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHH
Confidence 357889999999999 89999999999998877777789999999999999999988754 46777899999999999
Q ss_pred HHHHHHHhcc
Q 010925 84 YLQLCQVLYI 93 (497)
Q Consensus 84 yk~L~~~L~i 93 (497)
+..|.+....
T Consensus 233 ~~~il~ly~~ 242 (285)
T 3rgf_B 233 IRVILKLYEQ 242 (285)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 28
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.90 E-value=0.0021 Score=63.18 Aligned_cols=90 Identities=14% Similarity=0.019 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCCChhHHH----HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC---------CCCHHHHH
Q 010925 4 AFDDMRQMKNALNIGESDEIV----HVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK---------PFLLIDFS 70 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~i~----d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~---------prtL~DIa 70 (497)
.+..|..++..++++ .... ..|..+...+.....+-|.++..+||||||+|++..+. +.+..+++
T Consensus 157 p~~fl~~~~~~l~~~--~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~ 234 (271)
T 2w96_A 157 PHDFIEHFLSKMPEA--EENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLS 234 (271)
T ss_dssp HHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHH
Confidence 567899999999998 6543 45667776665433345789999999999999986542 23467899
Q ss_pred HHhCcChHHHHHHHHHHHHHhcccc
Q 010925 71 NYLNINVYELGAVYLQLCQVLYIAD 95 (497)
Q Consensus 71 ~v~~vsv~~Lgr~yk~L~~~L~i~~ 95 (497)
.++|++..+|..+++.|.+.+....
T Consensus 235 ~~~~v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 235 RVIKCDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654
No 29
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.78 E-value=0.0041 Score=60.46 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=61.7
Q ss_pred cchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhc
Q 010925 106 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175 (497)
Q Consensus 106 ~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~ 175 (497)
..+|.+++..|+ ++..+..+|..+++++.....+.+++|..|++||||+||+..+..+++++|+.+++
T Consensus 35 ~~~i~~v~~~l~--l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 35 ANLIQEMGQRLN--VSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 347888999998 89999999999999998777788999999999999999999999999999988764
No 30
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.75 E-value=0.0044 Score=60.12 Aligned_cols=67 Identities=12% Similarity=-0.023 Sum_probs=60.8
Q ss_pred chHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhc
Q 010925 107 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175 (497)
Q Consensus 107 ~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~ 175 (497)
.+|.+++..|+ ++..+..+|..+++++.....+.++.+..|++||||+||+..+..+++++|+.+++
T Consensus 46 ~~i~~v~~~l~--l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~ 112 (258)
T 2i53_A 46 RFIFDVGTRLG--LHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTAR 112 (258)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHcC--CChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 47888999998 89999999999999988777788999999999999999999999999999988764
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.61 E-value=0.0066 Score=59.07 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCCChhHH----HHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhc-CCCCC----HHHHHHHhCc
Q 010925 5 FDDMRQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFL----LIDFSNYLNI 75 (497)
Q Consensus 5 ~~~I~~ia~~L~Lp~~~~i----~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e-~~prt----L~DIa~v~~v 75 (497)
+..|..++..++++ ... ...|..+...+......-+.++..+||||||+|++.. +.|.+ ...++.++|+
T Consensus 153 ~~fl~~~~~~~~~~--~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~ 230 (254)
T 2f2c_A 153 TDFLIPLCNALKIP--EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNF 230 (254)
T ss_dssp GGSHHHHHHHTTCC--GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCC--hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCc
Confidence 45688899999998 443 4556667666654444567999999999999999986 45666 7899999999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 010925 76 NVYELGAVYLQLCQVLY 92 (497)
Q Consensus 76 sv~~Lgr~yk~L~~~L~ 92 (497)
+..+|..+++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 231 STNTVRTVKDQVSEAFS 247 (254)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988763
No 32
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=96.59 E-value=0.0091 Score=60.39 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=60.6
Q ss_pred chHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccC
Q 010925 107 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 177 (497)
Q Consensus 107 ~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vs 177 (497)
.+|.+++..|+..++..+..+|..+++++-....+.++.|..|++||||+||++.+..+++++|+.++...
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccC
Confidence 35666777776226899999999999999887788899999999999999999999999999998876544
No 33
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=96.49 E-value=0.035 Score=52.44 Aligned_cols=85 Identities=18% Similarity=0.292 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHHHHhcCCCCCHHHHHHHh-CcChHHHH
Q 010925 6 DDMRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG---RRTEQVQASCLYLACRQKSKPFLLIDFSNYL-NINVYELG 81 (497)
Q Consensus 6 ~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rG---R~~~~VaAACLYiACR~e~~prtL~DIa~v~-~vsv~~Lg 81 (497)
+-|.++-.+-.+| +.|.+.|..+.+.++...--+| -+...|+|||+.||..+.+.|+++.|+--.- .+..-++.
T Consensus 17 nclr~L~kKs~~~--eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD~sL~Dvelr 94 (260)
T 3h4c_A 17 NCMRGLHKKAVLP--EPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLDSSLGDVELR 94 (260)
T ss_dssp HHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCTTCCCHHHH
T ss_pred HHHHHHHhhccCc--HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHhhhhhHHHHH
Confidence 4566777788999 9999999999999886544444 3568999999999999999999999886441 12223333
Q ss_pred HHHHHHHHHhccc
Q 010925 82 AVYLQLCQVLYIA 94 (497)
Q Consensus 82 r~yk~L~~~L~i~ 94 (497)
-..|++.+++.
T Consensus 95 --r~Eiv~~l~l~ 105 (260)
T 3h4c_A 95 --RADIVRELHLE 105 (260)
T ss_dssp --HHHHHHHTTCH
T ss_pred --HHHHHHHccCC
Confidence 34555555543
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=96.37 E-value=0.0079 Score=58.58 Aligned_cols=89 Identities=17% Similarity=0.045 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCCCh--hHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC------CCCHHHHHHHhCc
Q 010925 4 AFDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK------PFLLIDFSNYLNI 75 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~--~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~------prtL~DIa~v~~v 75 (497)
.+..|..++..++++.. ..+...|..+...+......-+.++..+||||||+|++..+. +.....++.++++
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~ 230 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGC 230 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCc
Confidence 56789999999999831 123456777777666544456799999999999999998774 4567889999999
Q ss_pred ChHHHHHHHHHHHHHhc
Q 010925 76 NVYELGAVYLQLCQVLY 92 (497)
Q Consensus 76 sv~~Lgr~yk~L~~~L~ 92 (497)
+..+|..+++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~l~~ 247 (257)
T 1g3n_C 231 DVSVLQAAVEQILTSVS 247 (257)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998774
No 35
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=96.31 E-value=0.0064 Score=62.47 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=61.2
Q ss_pred cchHHHHHhhhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhc
Q 010925 106 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 175 (497)
Q Consensus 106 ~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~ 175 (497)
..+|.+++..|+ ++..+..+|..+++++.....+.++.|.-|++|||||||++.+..+++++|+.+++
T Consensus 42 v~wI~ev~~~l~--L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~ 109 (358)
T 2pk2_A 42 ANLLQDMGQRLN--VSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHTTTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 347888999998 89999999999999998777788999999999999999999999999999987664
No 36
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.18 E-value=0.02 Score=47.86 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=64.1
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCC------CCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHH
Q 010925 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK------GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 81 (497)
Q Consensus 8 I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~r------GR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lg 81 (497)
|+.+|-+||++ .+++.|.+++.+... .+.. --+....+||++|.+||..+....-.-+....+++...+.
T Consensus 6 v~dLcVqfgc~---e~~~~a~~lL~~Yk~-~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFSCI---EAVNMASKILKSYES-SLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHTCG---GGHHHHHHHHHHHHT-TSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHHHHH-HhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 78999999999 488888888777653 2221 1234678999999999999999999999999999999988
Q ss_pred HHHHHHHHHh
Q 010925 82 AVYLQLCQVL 91 (497)
Q Consensus 82 r~yk~L~~~L 91 (497)
+...++.+.+
T Consensus 82 ~l~~~~e~~~ 91 (95)
T 3m03_A 82 RLCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877776643
No 37
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=95.32 E-value=0.046 Score=54.76 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCCCh--hHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CCC----HHHHHHHhCcCh
Q 010925 5 FDDMRQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFL----LIDFSNYLNINV 77 (497)
Q Consensus 5 ~~~I~~ia~~L~Lp~~--~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~-prt----L~DIa~v~~vsv 77 (497)
+..|..+...++++.. ..+...|..+...+......-+.++..+||||||+|++..+. |.. ...++.+++++.
T Consensus 172 ~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~ 251 (306)
T 3g33_B 172 HDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 251 (306)
T ss_dssp GGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCH
Confidence 4578888898888721 124566777777666554556799999999999999998764 322 367788999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 010925 78 YELGAVYLQLCQVLYI 93 (497)
Q Consensus 78 ~~Lgr~yk~L~~~L~i 93 (497)
..|..++..|...+.-
T Consensus 252 ~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 252 DCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 38
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=94.88 E-value=0.088 Score=52.89 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=56.2
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHhC-C---CCCCCChHHHHHHHHHHHHHh-cCCCCCHHHHHHHhCcChHHHH
Q 010925 7 DMRQMKNALNIGESDEIVHVAKRFYGIAVAR-N---FTKGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYELG 81 (497)
Q Consensus 7 ~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~-~---~~rGR~~~~VaAACLYiACR~-e~~prtL~DIa~v~~vsv~~Lg 81 (497)
....+|..|+|+ +.+.+.|..+|+..... + .+-|.. ...-.||||+||.. ++..++|-.|-..+++++.++-
T Consensus 5 rF~~lC~~Lnld--~~~~~~Aw~~~~~~~~~~~~~~~~~~~~-~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff 81 (304)
T 2qdj_A 5 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQKK-KELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFF 81 (304)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHC----------CH-HHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhccccccCCCccch-HHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHH
Confidence 457889999999 99999999999998874 2 344444 45555569999985 6889999999999999987773
No 39
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=94.65 E-value=0.054 Score=56.53 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh--CCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA--RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN 74 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~--~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~ 74 (497)
-|..+|+.+|.+|+++. ..+......+|...+. ..++++|..++++-.|+|+.||..+..++++||-....
T Consensus 281 LAa~Rl~~LC~~L~~~~-~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 281 LAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 36788999999999872 3677777778877665 37889999999999999999999999999999988643
No 40
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=94.59 E-value=0.11 Score=51.35 Aligned_cols=96 Identities=8% Similarity=0.029 Sum_probs=74.2
Q ss_pred chHHHHHhhhCCCCCHHHHHHHHHHHHHhccc-cccCCCChhHHHHHHHHHHHHhcCC-CCCHhhHHHHhc--cCHHHHH
Q 010925 107 IFLHKFTDRLLPGGNKKVCDTARDILASMKRD-WITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVH--ICEATLM 182 (497)
Q Consensus 107 ~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~-~l~~GR~P~~IaaAaLylAar~~g~-~~t~~eIa~v~~--Vse~TIr 182 (497)
++|...+..++ +..++...|..++.++... ..+.++.+..+++||||+||+..+. ..++++++.+++ .+...|.
T Consensus 55 ~wl~~v~~~~~--l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~ 132 (283)
T 1w98_B 55 DWLMEVCEVYK--LHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEIL 132 (283)
T ss_dssp HHHHHHHHHTT--CBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHHHHhC--CCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHH
Confidence 46777788888 7999999999999998765 4578899999999999999999886 678999988773 6677776
Q ss_pred HHHHHHhcCC---CCCCCHHHHHHH
Q 010925 183 KRLIEFENTD---SGSLTIEDFMAR 204 (497)
Q Consensus 183 kr~kE~~~t~---~~~Lt~~ef~~~ 204 (497)
+-...+..+= ...-|+-.|...
T Consensus 133 ~mE~~IL~~L~~~l~~~tp~~fL~~ 157 (283)
T 1w98_B 133 TMELMIMKALKWRLSPLTIVSWLNV 157 (283)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCcCCCCCHHHHHHH
Confidence 6655544433 244566666654
No 41
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=94.38 E-value=0.073 Score=54.40 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh--CCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVA--RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~--~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~ 73 (497)
-|...|..+|..|+++. ..+......+|..+.. ..++++|..+++.-.|+|..||..+...++++|-...
T Consensus 217 La~~Rl~~LC~~L~~~~-~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 217 LAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 36778999999999873 3577788888888775 4688999999999999999999999999999998864
No 42
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=93.92 E-value=0.11 Score=57.29 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhC--CCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Q 010925 3 KAFDDMRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 73 (497)
Q Consensus 3 ~a~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~--~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~ 73 (497)
-|..+|+.+|+.|+++. ..+.+....+|...... .++++|..++++-.|+|..||..+..+++++|-...
T Consensus 526 LAa~Rl~~LC~~L~~~~-~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Y 597 (656)
T 4elj_A 526 LAYLRLNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 597 (656)
T ss_dssp HHHHHHHHHHHHHCTTC-THHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 47789999999998773 46888888888887754 688999999999999999999999999999998754
No 43
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=89.68 E-value=1.5 Score=36.59 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=52.2
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHhcccc------ccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHH
Q 010925 109 LHKFTDRLLPGGNKKVCDTARDILASMKRDW------ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 182 (497)
Q Consensus 109 I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~~------l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIr 182 (497)
|.-+|-.|+ -.+++..|.+|++..+..- -....+|. .++||+|.+|+.+.++++...+....|++++-..
T Consensus 6 v~dLcVqfg---c~e~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFS---CIEAVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHT---CGGGHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhC---CHHHHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 455666776 3447777777777766421 01234664 6677999999999999999999988887776555
Q ss_pred HHHHHH
Q 010925 183 KRLIEF 188 (497)
Q Consensus 183 kr~kE~ 188 (497)
+-...+
T Consensus 82 ~l~~~~ 87 (95)
T 3m03_A 82 RLCKQL 87 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 44
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=89.68 E-value=0.17 Score=35.02 Aligned_cols=29 Identities=10% Similarity=0.057 Sum_probs=25.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
...|.++||+.+||+..||.+.++.+...
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCSTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHHhc
Confidence 34789999999999999999999887643
No 45
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=89.60 E-value=1.4 Score=48.51 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHHhCC----CCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHH
Q 010925 7 DMRQMKNALNIGESDEIVHVAKRFYGIAVARN----FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGA 82 (497)
Q Consensus 7 ~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~----~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr 82 (497)
....+|..|+|+ +.+.+.|.+.|......+ .+--....++.|..+|.||+.+|..++|-.|-..+++++.++
T Consensus 7 ~f~~lC~~Ln~d--~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~F-- 82 (656)
T 4elj_A 7 DFTALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF-- 82 (656)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHH--
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHH--
Confidence 456899999999 999999999999998532 222234567777777777778999999999999999998776
Q ss_pred HHHHHHH
Q 010925 83 VYLQLCQ 89 (497)
Q Consensus 83 ~yk~L~~ 89 (497)
|++|.+
T Consensus 83 -F~kikk 88 (656)
T 4elj_A 83 -FNLLKE 88 (656)
T ss_dssp -HHHHHH
T ss_pred -HHHhHh
Confidence 455555
No 46
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=89.53 E-value=7.6 Score=31.72 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHH
Q 010925 47 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 126 (497)
Q Consensus 47 ~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~ 126 (497)
.+..+.-||--.... +.++.++|+.++++...|.+.|+.. +| ..|..||.+. -..
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~~~~~-----------Rl~ 60 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKE---MG----------EHFTDYLNRY-----------RVN 60 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHH---HS----------SCHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHH-----------HHH
Confidence 445566677666544 8999999999999999998877654 33 3466666543 111
Q ss_pred HHHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc-CHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 010925 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMAR 204 (497)
Q Consensus 127 ~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~V-se~TIrkr~kE~~~t~~~~Lt~~ef~~~ 204 (497)
.|..++. .-..++.+||..+|- +.....+.++... .+||.+|.+.
T Consensus 61 ~A~~lL~----------------------------~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~~ 106 (108)
T 3oou_A 61 YAKEELL----------------------------QTKDNLTIIAGKSGYTDMAYFYRQFKKHT-----GETPNRYRKI 106 (108)
T ss_dssp HHHHHHH----------------------------HCCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHHH----------------------------cCCCCHHHHHHHcCCCChHHHHHHHHHHh-----CcCHHHHHHH
Confidence 2221111 124567778888887 5567777777764 4677777654
No 47
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=87.24 E-value=11 Score=30.72 Aligned_cols=100 Identities=10% Similarity=0.132 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHH
Q 010925 48 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 127 (497)
Q Consensus 48 VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~ 127 (497)
+..++-||.-.. ..+.++.++|+.++++...|.+.|+.. +| ..|..||.+. -...
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~---~G----------~s~~~~~~~~-----------Rl~~ 58 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS---RG----------YSPMAFAKRV-----------RLQH 58 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH---TS----------SCHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH---hC----------cCHHHHHHHH-----------HHHH
Confidence 445556665554 447999999999999999998877643 33 4566666654 1122
Q ss_pred HHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCC-CCCHhhHHHHhccC-HHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 010925 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 204 (497)
Q Consensus 128 A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vs-e~TIrkr~kE~~~t~~~~Lt~~ef~~~ 204 (497)
|.+++. .+. ..++.+||..+|-+ .....+.++... .+||.+|++.
T Consensus 59 A~~lL~---------------------------~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~~ 105 (108)
T 3mn2_A 59 AHNLLS---------------------------DGATPTTVTAAALSCGFSNLGHFARDYRDMF-----GEKPSETLQR 105 (108)
T ss_dssp HHHHHH---------------------------SSSSCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHH---------------------------cCCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcChHHHHHh
Confidence 222221 111 26888888888874 567888887764 4678888765
No 48
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=87.07 E-value=9.2 Score=38.02 Aligned_cols=104 Identities=6% Similarity=0.004 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHh--CCCC-CCCChHHHHHHHHHHHHHh-cCCCCCHHHHHHHhCcChHHH
Q 010925 5 FDDMRQMKNALNIGESDEIVHVAKRFYGIAVA--RNFT-KGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYEL 80 (497)
Q Consensus 5 ~~~I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~--~~~~-rGR~~~~VaAACLYiACR~-e~~prtL~DIa~v~~vsv~~L 80 (497)
+++|.++...-+++ ..+.-.|..|..+... .++. ...+..-+..+||-+|.+- .....+-+.+|.+.|+++.+|
T Consensus 78 ~~Yl~RI~k~t~ls--~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~EL 155 (293)
T 2pmi_B 78 FNYFIRLTKFSSLE--HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHEL 155 (293)
T ss_dssp HHHHHHHHHTTTCC--HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHH
Confidence 56888999989999 8888888888777766 2343 3467788899999999995 678889999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccCCccchHHHHHhhh
Q 010925 81 GAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 116 (497)
Q Consensus 81 gr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L 116 (497)
++.-+.++..|+.+.. ++++.|...+...+
T Consensus 156 N~LE~eFL~lLdf~L~------V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 156 NILENDFLKRVNYRII------PRDHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHTTTTCCS------CCTTHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCcee------eCHHHHHHHHHHHh
Confidence 9999999999998764 56777765444433
No 49
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=86.95 E-value=0.39 Score=38.41 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=26.9
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.+.|++|||+.+|||..||++-|+.|.+
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999998854
No 50
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=82.93 E-value=4.7 Score=40.32 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=64.3
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHhcc-cccc--CCCChhHHHHHHHHHHHHh-cCCCCCHhhHHHHhccCHHHHHHHH
Q 010925 110 HKFTDRLLPGGNKKVCDTARDILASMKR-DWIT--TGRKPSGLCGAALYVSALT-HGLKFSKSDIVKIVHICEATLMKRL 185 (497)
Q Consensus 110 ~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~-~~l~--~GR~P~~IaaAaLylAar~-~g~~~t~~eIa~v~~Vse~TIrkr~ 185 (497)
..+|..|. ++..+...|+++.+.+.. +.+. +--...-..+||||+|+.- .|..+|+.+|-+.++++-..--+++
T Consensus 7 ~~lC~~Ln--ld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~k~ 84 (304)
T 2qdj_A 7 TALCQKLK--IPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFNLL 84 (304)
T ss_dssp HHHHHHTT--CCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHHHHH
Confidence 45788888 899999999999999887 3332 1123556667779999964 4556889899998888766665555
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHhhhc
Q 010925 186 IEFENTDSGSLTIEDFMARKKELHEG 211 (497)
Q Consensus 186 kE~~~t~~~~Lt~~ef~~~~~dle~e 211 (497)
+.. + ...+|.+..+.||..
T Consensus 85 ~~~-----d--~~~~~~~~i~~Le~~ 103 (304)
T 2qdj_A 85 KEI-----D--TSTKVDNAMSRLLKK 103 (304)
T ss_dssp TTS-----C--CCHHHHHHHHHHHHH
T ss_pred HHc-----C--CCHHHHHHHHHHHHH
Confidence 552 2 567777766666654
No 51
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=82.93 E-value=0.45 Score=34.41 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
...|+++||+.+|||..||++.++
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346999999999999999999874
No 52
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=80.82 E-value=1.8 Score=34.77 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhccccc
Q 010925 51 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 96 (497)
Q Consensus 51 ACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~ 96 (497)
--|+-|.+..|.|....||+..+||+.++|.++++.|.+.-.|..|
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 3467788899999999999999999999999999999998877544
No 53
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=77.92 E-value=2.3 Score=37.88 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCC
Q 010925 158 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 192 (497)
Q Consensus 158 ar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~ 192 (497)
....+.+.|..+||+.+|+|+.|+++|++.+.+..
T Consensus 11 ~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 11 ILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 33446678999999999999999999999997653
No 54
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=74.27 E-value=0.46 Score=33.20 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.5
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 165 FSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
.|+.+||..+||+..||.+.++.+.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 8999999999999999999887653
No 55
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=74.10 E-value=20 Score=36.36 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHhc----------CCCCCHHHHHHHhCcChHHHHHHHHHHHHH-----------hc-cc--------
Q 010925 45 TEQVQASCLYLACRQK----------SKPFLLIDFSNYLNINVYELGAVYLQLCQV-----------LY-IA-------- 94 (497)
Q Consensus 45 ~~~VaAACLYiACR~e----------~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~-----------L~-i~-------- 94 (497)
..++.|.|+=++-..+ +..+++--|-++++++.+++.++.-.+.+. |. ++
T Consensus 104 h~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~~LprelvkHL~~iEe~iLesla 183 (347)
T 2r7g_A 104 HMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLA 183 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3567888887765543 236777789999999999999998666554 21 00
Q ss_pred ---cccccccc--CCc--------cch-----------HHHHHhhhCCCCCHHHHHHHHHHHHHhcc--ccccCCCChhH
Q 010925 95 ---DESNVLKQ--VDP--------SIF-----------LHKFTDRLLPGGNKKVCDTARDILASMKR--DWITTGRKPSG 148 (497)
Q Consensus 95 ---~~~~~~~~--idP--------~~~-----------I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~--~~l~~GR~P~~ 148 (497)
..+.+... ..+ ..| |..+|.+|+. ..+++...++.+++.... ..+..+|+-.-
T Consensus 184 W~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~-~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQ 262 (347)
T 2r7g_A 184 WLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLS-EHPELEHIIWTLFQHTLQNEYELMRDRHLDQ 262 (347)
T ss_dssp GSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHCGGGGTTSCHHH
T ss_pred hccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhChHhhcCCcHHH
Confidence 00000000 001 111 3456777752 234566677777777653 56889999999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHH
Q 010925 149 LCGAALYVSALTHGLKFSKSDIVK 172 (497)
Q Consensus 149 IaaAaLylAar~~g~~~t~~eIa~ 172 (497)
|.-.|||+.|+.++..+|.++|..
T Consensus 263 iilCaiY~i~Kv~~~~~tF~~Ii~ 286 (347)
T 2r7g_A 263 IMMCSMYGICKVKNIDLKFKIIVT 286 (347)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999998888888876
No 56
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=73.35 E-value=35 Score=32.10 Aligned_cols=101 Identities=7% Similarity=0.020 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHH
Q 010925 45 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 124 (497)
Q Consensus 45 ~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V 124 (497)
...+..+.-||--.. ..++++.++|+.+++++..|.+.|+ + .| ..|..||.+. .
T Consensus 168 ~~~~~~~~~~i~~~~-~~~~sl~~lA~~~~~S~~~l~r~fk---~-~G----------~t~~~~l~~~-----------R 221 (276)
T 3gbg_A 168 LDAMEKISCLVKSDI-TRNWRWADICGELRTNRMILKKELE---S-RG----------VKFRELINSI-----------R 221 (276)
T ss_dssp TCHHHHHHHHHHHTT-TSCCCHHHHHHHHTCCHHHHHHHHH---T-TT----------CCHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHHhh-cCCCCHHHHHHHHCcCHHHHHHHHH---H-cC----------CCHHHHHHHH-----------H
Confidence 344555555554333 3377788888888888777777663 2 43 2355555443 1
Q ss_pred HHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc-CHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 010925 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMA 203 (497)
Q Consensus 125 ~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~V-se~TIrkr~kE~~~t~~~~Lt~~ef~~ 203 (497)
...|.+++. .-..|+.+||..+|- +.+...+.+|... -+||.+|++
T Consensus 222 l~~A~~lL~----------------------------~~~~si~eIA~~~Gf~~~s~F~r~Fkk~~-----G~tP~~yR~ 268 (276)
T 3gbg_A 222 ISYSISLMK----------------------------TGEFKIKQIAYQSGFASVSYFSTVFKSTM-----NVAPSEYLF 268 (276)
T ss_dssp HHHHHHHHH----------------------------HTCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHH
T ss_pred HHHHHHHHh----------------------------CCCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCHHHHHH
Confidence 122222221 124688899999998 5667888888874 478899887
Q ss_pred H
Q 010925 204 R 204 (497)
Q Consensus 204 ~ 204 (497)
.
T Consensus 269 ~ 269 (276)
T 3gbg_A 269 M 269 (276)
T ss_dssp H
T ss_pred H
Confidence 6
No 57
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=72.48 E-value=3 Score=33.40 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=26.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|-..|..+||+.+||+..||++++..|..
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35799999999999999999999999864
No 58
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=72.40 E-value=3.4 Score=37.34 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.7
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcCC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 192 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~ 192 (497)
+-++|..+||+.+|+|+.|+++|++.|.+..
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999999997643
No 59
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=72.10 E-value=5.6 Score=29.16 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCCCCHhhHHHHh-----ccCHHHHHHHHHHHh
Q 010925 162 GLKFSKSDIVKIV-----HICEATLMKRLIEFE 189 (497)
Q Consensus 162 g~~~t~~eIa~v~-----~Vse~TIrkr~kE~~ 189 (497)
+-..|..+|++.+ +||..||++-++++.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg 49 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKELH 49 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 4579999999999 999999999998764
No 60
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=72.02 E-value=3.7 Score=35.91 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=27.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+-+.|..+||+.+|+|++|+++|++.|.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999654
No 61
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=71.45 E-value=3.9 Score=35.74 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+-+.|..+||+.+|+|++|+++|++.|.+
T Consensus 19 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 19 GNARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp HCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345799999999999999999999999964
No 62
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=71.33 E-value=17 Score=35.03 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCCChhH----HHHHHHHHHHHHHh-CCCCCCCChHHHHHHHHHHHHHhcCCCCC----HHHHHHHhC
Q 010925 4 AFDDMRQMKNALNIGESDE----IVHVAKRFYGIAVA-RNFTKGRRTEQVQASCLYLACRQKSKPFL----LIDFSNYLN 74 (497)
Q Consensus 4 a~~~I~~ia~~L~Lp~~~~----i~d~A~~iyk~a~~-~~~~rGR~~~~VaAACLYiACR~e~~prt----L~DIa~v~~ 74 (497)
.+..+..+...++++ .. +...|..+...+.- ..++ +.++..+||||+..+. .+.+.. ...++..++
T Consensus 149 p~~FL~~~l~~~~~~--~~~~~~~~~~a~~~l~~~l~d~~~l-~~~PS~iAaaa~~~~l--~~~~~~~~~~~~~L~~~t~ 223 (252)
T 1f5q_B 149 STDLICYILHIMHAP--REDYLNIYNLCRPKIFCALCDGRSA-MKRPVLITLACMHLTM--NQKYDYYENRIDGVCKSLY 223 (252)
T ss_dssp HHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHCHHHH-TSCHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCC--cchHHHHHHHHHHHHHHHHhchhhh-ccCHHHHHHHHHHHHh--ccCCCchhhHHHHHHHHHC
Confidence 467788889999988 43 34456555555543 3343 5778899999954443 444333 345677899
Q ss_pred cChHHHHHHHHHHHHHhc
Q 010925 75 INVYELGAVYLQLCQVLY 92 (497)
Q Consensus 75 vsv~~Lgr~yk~L~~~L~ 92 (497)
++...|..++..|.+.|.
T Consensus 224 ~~~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 224 ITKEELHQCCDLVDIAIV 241 (252)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999998874
No 63
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=71.05 E-value=4 Score=35.57 Aligned_cols=30 Identities=7% Similarity=0.316 Sum_probs=26.9
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+-+.|..+||+.+|+|+.|++++++.|.+
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346799999999999999999999999964
No 64
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=70.95 E-value=4.3 Score=35.25 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=27.6
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+.++|..+|++.+|++.+|++++++.|.+.
T Consensus 14 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 14 YNAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3457999999999999999999999999754
No 65
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=70.95 E-value=11 Score=34.25 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhC--cChHHHHHHHHHHHHHhc-----ccccc---cccccCCc--cchHHHHHh
Q 010925 47 QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYELGAVYLQLCQVLY-----IADES---NVLKQVDP--SIFLHKFTD 114 (497)
Q Consensus 47 ~VaAACLYiACR~e~~prtL~DIa~v~~--vsv~~Lgr~yk~L~~~L~-----i~~~~---~~~~~idP--~~~I~Rf~~ 114 (497)
.++=|.||.+ +.|.++.+++.+++ ++..++......|...+. +.... .+.=...| ..||.+|.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~- 84 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLL- 84 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHH-
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHh-
Confidence 4455677775 78999999999999 999999999999988764 21110 00000112 12222221
Q ss_pred hhCCCCCHHHHHHHHHHHHHhccccccCCCChhHHHHHHH-HHHHHhcCCCCCHhhHHHHhccC
Q 010925 115 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAAL-YVSALTHGLKFSKSDIVKIVHIC 177 (497)
Q Consensus 115 ~L~~~~~~~V~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaL-ylAar~~g~~~t~~eIa~v~~Vs 177 (497)
....|..+--|++ -+|.-.+..++|..+|+++.||+
T Consensus 85 ---------------------------~~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~ 121 (162)
T 1t6s_A 85 ---------------------------APVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS 121 (162)
T ss_dssp ---------------------------SCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC
T ss_pred ---------------------------cccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC
Confidence 1122334555554 44555566899999999999998
No 66
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=70.75 E-value=9.5 Score=36.08 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHhccccccCC---CChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 120 GNKKVCDTARDILASMKRDWITTG---RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 120 ~~~~V~~~A~~Lv~~~~~~~l~~G---R~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
.+..|..+|..|++.+.-..--.| -+|..+||||+.+|+.-.+.++++.|+- ...-+-..|.-|..|+.
T Consensus 28 ~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r-~lD~sL~Dvelrr~Eiv 99 (260)
T 3h4c_A 28 LPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR-CLDSSLGDVELRRADIV 99 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH-HHCTTCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH-HHhhhhhHHHHHHHHHH
Confidence 689999999999998763222223 4789999999999999999999988753 23333335555555654
No 67
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=70.47 E-value=3.6 Score=32.42 Aligned_cols=28 Identities=7% Similarity=0.056 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-..|..+||+.+||+..||++++..|..
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999854
No 68
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=70.10 E-value=4.2 Score=35.96 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=27.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+.+.|..+||+.+|+|.+|++++++.|.+.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999654
No 69
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=69.93 E-value=4.4 Score=35.17 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+-+.|..+||+.+|+|.+|++++++.|.+.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999653
No 70
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=69.73 E-value=4.5 Score=34.58 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.7
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+-+.|..+|++.+|+|..|++++++.+.+
T Consensus 15 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345789999999999999999999999964
No 71
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=69.34 E-value=3.3 Score=31.66 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=20.8
Q ss_pred CCHhhHHHHhccCHHHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+|++|||+.+|||..||.+.+..
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 47999999999999999998863
No 72
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=69.27 E-value=5.4 Score=31.11 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-..|..+||+.+||+.+||++.++.|.+
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999964
No 73
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=68.99 E-value=3.4 Score=30.05 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+|+|+.||+.++..+.
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456899999999999999999888764
No 74
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=68.99 E-value=15 Score=29.48 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 152 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 152 AaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
+.-||-....+-+.++.+||+.+|+|+.++.+.+++.. .+|+.+|....
T Consensus 7 i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----g~s~~~~~~~~ 55 (103)
T 3lsg_A 7 IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNF-----GIPFQDYLLQK 55 (103)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 33455555555589999999999999999999999984 46888887653
No 75
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=68.77 E-value=4.6 Score=36.44 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=27.3
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+-++|..+||+.+|+|++|+++|++.|.+.
T Consensus 28 ~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 28 KDARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3457999999999999999999999999653
No 76
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=68.61 E-value=9.2 Score=31.14 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHH
Q 010925 48 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 127 (497)
Q Consensus 48 VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~ 127 (497)
+..++-||--...+.+.++.++|+.++++...|.+.|+.. +| ..|..||.+. -...
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~~~~~-----------Rl~~ 60 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ---LG----------ISVLSWREDQ-----------RISQ 60 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH---HS----------SCHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH---HC----------cCHHHHHHHH-----------HHHH
Confidence 4555667766555578999999999999999998877643 33 3466666554 1112
Q ss_pred HHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccC-HHHHHHHHHHHhcCCCCCCCHHHHHH
Q 010925 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMA 203 (497)
Q Consensus 128 A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vs-e~TIrkr~kE~~~t~~~~Lt~~ef~~ 203 (497)
|..++.. -..++.+||..+|-+ .+...+.++... .+||.+|.+
T Consensus 61 A~~lL~~----------------------------~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~ 104 (107)
T 2k9s_A 61 AKLLLST----------------------------TRMPIATVGRNVGFDDQLYFSRVFKKCT-----GASPSEFRA 104 (107)
T ss_dssp HHHHHHH----------------------------CCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHH
T ss_pred HHHHHHc----------------------------CCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCHHHHHh
Confidence 2222211 235677777777763 456666666653 356677654
No 77
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=68.60 E-value=6.7 Score=35.24 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 43 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 43 R~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
++...-.-+.+|+|.+..+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 24 ~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 24 TKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344555677889998766779999999999999999999999999874
No 78
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=68.53 E-value=11 Score=30.34 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHH
Q 010925 48 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 127 (497)
Q Consensus 48 VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~ 127 (497)
+..+.-||--...+.+.++.+||+.++++...|.+.|+... | ..|..||.+. -...
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~---g----------~s~~~~~~~~-----------Rl~~ 59 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNF---G----------IPFQDYLLQK-----------RMEK 59 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHH---S----------SCHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH---C----------cCHHHHHHHH-----------HHHH
Confidence 34455566655555689999999999999999988776543 3 3466666554 1112
Q ss_pred HHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc-CHHHHHHHHHHHhcCCCCCCCHHHHH
Q 010925 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFM 202 (497)
Q Consensus 128 A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~V-se~TIrkr~kE~~~t~~~~Lt~~ef~ 202 (497)
|..++.. -..++.+||..+|- +.....+.++... .+||.+|.
T Consensus 60 A~~lL~~----------------------------~~~si~~iA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR 102 (103)
T 3lsg_A 60 AKLLLLT----------------------------TELKNYEIAEQVGFEDVNYFITKFKKYY-----QITPKQYR 102 (103)
T ss_dssp HHHHHHH----------------------------CCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHT
T ss_pred HHHHHHC----------------------------CCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCHHHHh
Confidence 2222211 23567777777776 5567777777654 35566654
No 79
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=67.64 E-value=87 Score=32.65 Aligned_cols=26 Identities=0% Similarity=-0.063 Sum_probs=22.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
...|+++||..+|||..|||+++..-
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RA 419 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKA 419 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 57999999999999999999776543
No 80
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=67.04 E-value=5.4 Score=30.38 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=27.4
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++-.++..+||+.+||+..||.+.++.|.+.
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4567999999999999999999999999653
No 81
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=67.03 E-value=15 Score=29.78 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
-|.-+.-||-..... ++++.+||+.+|+|+.++.+.+++.. .+|+.+|....
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~~ 57 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKEM-----GEHFTDYLNRY 57 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 344455566665544 79999999999999999999999874 46888887653
No 82
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=66.35 E-value=6.1 Score=29.62 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+|+|..||+++++.+.
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345999999999999999999988864
No 83
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=66.24 E-value=5.8 Score=34.52 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=27.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+-+.|..+||+.+|++.+|++++++.|.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999654
No 84
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=66.01 E-value=4.9 Score=30.18 Aligned_cols=27 Identities=4% Similarity=0.048 Sum_probs=24.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.+|||..+|||+.||++++....
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 469999999999999999999987764
No 85
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=65.84 E-value=14 Score=34.12 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=26.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++.|+.+||..+|+|..|+.+-+++|.+.
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999998754
No 86
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=65.80 E-value=6.1 Score=31.07 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=24.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
...|.++||+.+||++.||++++..+..
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4479999999999999999999887654
No 87
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=65.34 E-value=5.7 Score=39.23 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=27.9
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 160 THGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 160 ~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+.-.+|+.+||+.+|||+.|||+=++++.+.
T Consensus 17 ~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 17 YYEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44566999999999999999999999998653
No 88
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=65.10 E-value=4.9 Score=31.95 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=24.9
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
.-.+++.++|+.++||+.|||+=+..+.
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le 41 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLE 41 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3469999999999999999999888874
No 89
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=65.08 E-value=4.8 Score=39.05 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..|++-+.+ ..|+. .|+.+||+.+||+..||-..|..
T Consensus 125 il~aa~~l~~-~~G~~~~T~~~IA~~AGvs~gtlY~yF~s 163 (311)
T 4ich_A 125 ILETAWRLIA-RRGYHNVRIHDIASELGTSNATIHYHFPS 163 (311)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHH-HcCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 4444444333 35765 99999999999999999877654
No 90
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=64.46 E-value=16 Score=29.58 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 149 IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
|.-+.-||-....+.++++.+||+.+|+|..++.+.++... .+|+.+|....
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~~ 56 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQL-----GISVLSWREDQ 56 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 33444455555444789999999999999999999999864 37788887653
No 91
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=64.27 E-value=6.8 Score=32.14 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=27.1
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.|...|..+||+.+||+.+||++.++.|.+
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 566799999999999999999999999864
No 92
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=63.91 E-value=7.8 Score=28.65 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+|+|+.||++++....
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458999999999999999999888764
No 93
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=63.42 E-value=7.3 Score=29.70 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=24.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
...|.++||..+|+++.||+.++..+..
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4579999999999999999999887654
No 94
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=62.23 E-value=6.8 Score=31.24 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=26.4
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.+||+.+||++.++.|.+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55799999999999999999999999954
No 95
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=61.63 E-value=8.3 Score=30.72 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+||++.||++++....
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999887764
No 96
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=61.52 E-value=5.1 Score=32.37 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=24.2
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 165 FSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.|..+||+.+||+..||++++..|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 89999999999999999999999853
No 97
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=61.03 E-value=8.7 Score=34.95 Aligned_cols=29 Identities=3% Similarity=0.155 Sum_probs=26.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|..++|+.+|||+.||+++++.+.+
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44589999999999999999999999864
No 98
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.97 E-value=8.4 Score=29.26 Aligned_cols=26 Identities=0% Similarity=-0.063 Sum_probs=22.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
...|.++||..+|+|+.||++++...
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999999877654
No 99
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=60.71 E-value=6.4 Score=31.20 Aligned_cols=27 Identities=0% Similarity=-0.027 Sum_probs=23.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+|||..||++++....
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 579999999999999999998876654
No 100
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=60.63 E-value=8.2 Score=33.82 Aligned_cols=45 Identities=13% Similarity=-0.017 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 46 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 46 ~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
..-.-+.+|+|-...+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 11 ~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 11 RYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344556788887655679999999999999999999999999874
No 101
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=59.91 E-value=16 Score=30.90 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 49 QASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 49 aAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
..+.+|++-+..+.|.+..+||+.++++...+.+.+..|.+.
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344556655545779999999999999999999999998873
No 102
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=59.72 E-value=16 Score=33.82 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=26.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++.|+.+||..+|++..|+.+-+++|.+-
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999753
No 103
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=59.66 E-value=29 Score=28.05 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 149 IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
|.-+.-||.... ..++|+.+||+.+|+|+.++.+.+++.. .+|+.+|....
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~~-----G~s~~~~~~~~ 54 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRSR-----GYSPMAFAKRV 54 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHHT-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHHh-----CcCHHHHHHHH
Confidence 334445565554 4469999999999999999999999873 47889987653
No 104
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=59.53 E-value=14 Score=33.17 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999754
No 105
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=59.37 E-value=9.8 Score=32.21 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 153 ALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 153 aLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.||.+-..++-+ .|+.+|++.++++.+||.+.++.|.+
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344443345555 89999999999999999999999864
No 106
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=59.03 E-value=6.7 Score=32.90 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=23.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-..|+++||+.+|||.+||.+-=+.+..
T Consensus 57 ge~TQREIA~~lGiS~stISRi~r~L~~ 84 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRGSNSLKA 84 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhhhHHHHHHHH
Confidence 4599999999999999999987555543
No 107
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=58.82 E-value=6.1 Score=34.01 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=26.2
Q ss_pred cCCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.|.++ |.+++|..+|||..|||+.|+.|..
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~~ 64 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELER 64 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36677 7899999999999999999999853
No 108
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=58.34 E-value=18 Score=30.52 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.3
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+-.+|+.+||+.++|+.+||++.++.|.+-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 3567899999999999999999999998643
No 109
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=58.18 E-value=13 Score=33.07 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=25.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
++.|+.+||..+|+|..|+.+-+++|.+
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 165 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRR 165 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999964
No 110
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=58.10 E-value=13 Score=29.76 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.4
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
..|+.+||..+||+..||+++.+.+...
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~ 50 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSN 50 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhc
Confidence 5799999999999999999999998753
No 111
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=58.05 E-value=8.7 Score=35.83 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.7
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
....||.+||..+|||..||.+.++.-.
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 3559999999999999999999988753
No 112
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=57.95 E-value=9.2 Score=36.44 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHh
Q 010925 46 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 91 (497)
Q Consensus 46 ~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 91 (497)
..++=|.||.+ +.|.++.+++.+++++...+......|...+
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~l~~~~~~v~~~l~~L~~~y 58 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAATEQPVYRVAAKLQLMADEL 58 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34556777765 7899999999999999999999999998877
No 113
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.78 E-value=7.6 Score=31.39 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+|||+.||++++..+.
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 447899999999999999998887754
No 114
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=57.70 E-value=21 Score=29.69 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCChHHHHH--HHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010925 21 DEIVHVAKRFYGIAVARNFTKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 93 (497)
Q Consensus 21 ~~i~d~A~~iyk~a~~~~~~rGR~~~~VaA--ACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 93 (497)
+.|++....+|..-.+.=..++|....+.| .+.|++... +..+|.+|+..||-+-.++..+++++.+.+.-
T Consensus 8 ~~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 8 ATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCREL--TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHSSCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHhCCCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 456666666665544432344565544433 477876655 56889999999999999999999999998754
No 115
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.45 E-value=6.8 Score=31.90 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=25.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.-.+++.++|+.++||+.|||+=+..+.+
T Consensus 14 ~g~vsv~eLA~~l~VS~~TIRrDL~~Le~ 42 (87)
T 2k02_A 14 QGRMEAKQLSARLQTPQPLIDAMLERMEA 42 (87)
T ss_dssp SCSEEHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34689999999999999999999988854
No 116
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=57.30 E-value=12 Score=32.87 Aligned_cols=46 Identities=15% Similarity=-0.045 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 44 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 44 ~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
+...-.-+.+|+|-+ .+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 12 ~~~yAl~~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 12 RFSIAVHILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 334455667777764 5678999999999999999999999999883
No 117
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=57.26 E-value=16 Score=32.88 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=26.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999643
No 118
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=57.20 E-value=6.6 Score=31.21 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=23.0
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 165 FSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
.|+.+||+.+||+..||+++++.+.
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7899999999999999999988774
No 119
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=57.17 E-value=13 Score=31.04 Aligned_cols=32 Identities=0% Similarity=-0.149 Sum_probs=27.4
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 159 LTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 159 r~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
..+-...||.+||..+|||..||.+-++...+
T Consensus 29 lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~ 60 (101)
T 2w7n_A 29 GVLVDGKPQATFATSLGLTRGAVSQAVHRVWA 60 (101)
T ss_dssp HHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33567899999999999999999999888763
No 120
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=57.11 E-value=9.8 Score=30.01 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=26.6
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+-..|+.+|++.+|++.+||.+.++.+.+
T Consensus 35 ~~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 35 GSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp TCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345789999999999999999999999864
No 121
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=56.69 E-value=10 Score=30.27 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=26.4
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.-..|..+|++.+|++.+||.+.++.+.+.
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 34 NQELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999653
No 122
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=56.68 E-value=11 Score=34.42 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=28.8
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 159 LTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 159 r~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
..+|+..|++|||+.+|++..|++++++.|.+
T Consensus 19 ~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 19 EKNGYPPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp HHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 35788899999999999999999999999964
No 123
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=56.54 E-value=5.7 Score=32.94 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.3
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|-.+ +..++|+.+|||..|||+.|+.|..
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4445 8999999999999999999999864
No 124
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=56.32 E-value=20 Score=32.55 Aligned_cols=29 Identities=10% Similarity=0.346 Sum_probs=26.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999753
No 125
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=55.66 E-value=10 Score=32.08 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=27.2
Q ss_pred hcCCCCCHhhHHHHh--ccCHHHHHHHHHHHhcC
Q 010925 160 THGLKFSKSDIVKIV--HICEATLMKRLIEFENT 191 (497)
Q Consensus 160 ~~g~~~t~~eIa~v~--~Vse~TIrkr~kE~~~t 191 (497)
.+| +.|..+||+.+ ++|..+|++|++.+.+.
T Consensus 24 ~~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 24 EEG-NGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp HHS-CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred HcC-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 344 89999999999 99999999999998653
No 126
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=55.55 E-value=4.7 Score=30.98 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=26.4
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 204 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~ 204 (497)
..|++|||+.+|||..||.+.+.. ...++.+-...+
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~-----~~~vs~~t~~rV 44 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMN-----PDKVSQATRNRV 44 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTC-----CCCSCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC-----CCCCCHHHHHHH
Confidence 479999999999999999987642 224565554444
No 127
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=55.52 E-value=7.7 Score=30.91 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
...|.++||..+||++.||++++..+..
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999999887653
No 128
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=54.82 E-value=9.2 Score=30.81 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+||++.||+..++.+.
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 446899999999999999999988874
No 129
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=53.91 E-value=18 Score=30.31 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=24.6
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 165 FSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+|+.+||+.+|++.+||++.++.+.+
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999864
No 130
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=53.83 E-value=10 Score=31.03 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.6
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
..|..+||..+||+..||++.++.+..+
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 4689999999999999999999888643
No 131
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=53.76 E-value=28 Score=28.76 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=25.3
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+|+.+|++.++++.+||.+.++.+.+
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999864
No 132
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=53.38 E-value=18 Score=30.37 Aligned_cols=41 Identities=10% Similarity=0.069 Sum_probs=31.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhcCCC-------CCCCHHHHHHH
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFENTDS-------GSLTIEDFMAR 204 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~-------~~Lt~~ef~~~ 204 (497)
..|..+||+.+||+..||++.++.+..... ..|+.++...+
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i 69 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNV 69 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHH
Confidence 468999999999999999999998865431 24666554444
No 133
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=53.29 E-value=8.2 Score=32.24 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=25.3
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.++ |.+++|+.+|||..|||+.|+.|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455 8999999999999999999999853
No 134
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=53.27 E-value=7 Score=32.15 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.3
Q ss_pred CCHhhHHHHhccCHHHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.|+.|||..+|||..||++-+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 79999999999999999998764
No 135
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=52.99 E-value=19 Score=28.49 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=27.1
Q ss_pred hcCCCCCHhhHHHHhccCHHH-HHHHHHHHhc
Q 010925 160 THGLKFSKSDIVKIVHICEAT-LMKRLIEFEN 190 (497)
Q Consensus 160 ~~g~~~t~~eIa~v~~Vse~T-Irkr~kE~~~ 190 (497)
.++..+|+.+|++.++++.+| +.+.++.+.+
T Consensus 26 ~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred hcCCCCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 345579999999999999999 9999998854
No 136
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=52.75 E-value=12 Score=30.24 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
-+.+..+|++.+|++.+||.+.++.+.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999999643
No 137
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=52.75 E-value=11 Score=29.76 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=25.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+||.+.++.|.+
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999964
No 138
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=52.61 E-value=18 Score=27.29 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=28.8
Q ss_pred HhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 58 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 58 R~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
..++.|.++.|||..++++..++.+....|.+.
T Consensus 20 ~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346678999999999999999999998888774
No 139
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=52.55 E-value=11 Score=32.15 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=25.3
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.++ |.+++|..+|||..|||+.|+.|..
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 5999999999999999999999853
No 140
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=52.39 E-value=22 Score=32.40 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcCC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 192 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~ 192 (497)
.++.|+.+||..+|++..|+.+-+++|.+..
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 206 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAAG 206 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGGT
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 3567899999999999999999999997643
No 141
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=52.22 E-value=8.6 Score=32.91 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=25.4
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.++ |.+++|..+|||..|||+.|+.|..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456 8999999999999999999999854
No 142
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=52.16 E-value=12 Score=32.24 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=25.7
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.++ |.+++|+.+|||..|||+.|+.|..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 8999999999999999999999864
No 143
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=51.96 E-value=14 Score=32.89 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++.|+.+||..+|+|..|+.+-+++|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 36899999999999999999999999753
No 144
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=51.15 E-value=26 Score=32.34 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHHhc----------CCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHH
Q 010925 43 RRTEQVQASCLYLACRQK----------SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLH 110 (497)
Q Consensus 43 R~~~~VaAACLYiACR~e----------~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~ 110 (497)
++...-.|..|+.-+... ..|.+..|||+.+|++..+|.|+.++|.+.=-|..........||..+-.
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~~~L~~ 240 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVTLSR 240 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC------
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECCHHHHHh
Confidence 444545555554444432 35789999999999999999999999988533332221122356654433
No 145
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=51.04 E-value=23 Score=31.97 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=26.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.++|+.+||..+|+|..|+.+-+++|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999753
No 146
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=50.97 E-value=15 Score=32.65 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=26.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++.|+.+||..+|+|..|+.+-+++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999753
No 147
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=50.84 E-value=36 Score=27.73 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 149 IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
|.-+.-||-.. ...++++.+||+.+|+|+.++.+.++... .+|+.+|....
T Consensus 9 i~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~~ 59 (113)
T 3oio_A 9 LTEAVSLMEAN-IEEPLSTDDIAYYVGVSRRQLERLFKQYL-----GTVPSKYYLEL 59 (113)
T ss_dssp HHHHHHHHHTC-SSSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHHH
T ss_pred HHHHHHHHHhh-hcCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 33444444333 33459999999999999999999999984 47888887653
No 148
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=50.79 E-value=99 Score=30.58 Aligned_cols=96 Identities=8% Similarity=-0.092 Sum_probs=67.8
Q ss_pred cchHHHHHhhhCCCCCHHHHHHHHHHHHHhccc---cccCCCChhHHHHHHHHHHHHhcC-CCCCHhhHHHHhccCHHHH
Q 010925 106 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRD---WITTGRKPSGLCGAALYVSALTHG-LKFSKSDIVKIVHICEATL 181 (497)
Q Consensus 106 ~~~I~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~~---~l~~GR~P~~IaaAaLylAar~~g-~~~t~~eIa~v~~Vse~TI 181 (497)
..||.|+...-. .+..+.-.|+-.+.++... ...+.....=+--+||.+|+..++ ...+.+.+|++.||+...|
T Consensus 78 ~~Yl~RI~k~t~--ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~EL 155 (293)
T 2pmi_B 78 FNYFIRLTKFSS--LEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHEL 155 (293)
T ss_dssp HHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHH
Confidence 345555555444 7888998888888888752 334556788888999999998875 4578999999999998888
Q ss_pred HHHHHHHhcCCCCCCC--HHHHHH
Q 010925 182 MKRLIEFENTDSGSLT--IEDFMA 203 (497)
Q Consensus 182 rkr~kE~~~t~~~~Lt--~~ef~~ 203 (497)
..-=.+|...-.=.|. .++|..
T Consensus 156 N~LE~eFL~lLdf~L~V~~ee~~~ 179 (293)
T 2pmi_B 156 NILENDFLKRVNYRIIPRDHNITL 179 (293)
T ss_dssp HHHHHHHHHTTTTCCSCCTTHHHH
T ss_pred HHHHHHHHHHcCCceeeCHHHHHH
Confidence 7666666554443333 445554
No 149
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=50.36 E-value=18 Score=29.68 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHH
Q 010925 47 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 126 (497)
Q Consensus 47 ~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~ 126 (497)
.+..++-||-.. ...+.++.+||+.++++...|.+.|+.. +| ..|..||.++ -..
T Consensus 8 ~i~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~~~~~-----------Rl~ 62 (113)
T 3oio_A 8 KLTEAVSLMEAN-IEEPLSTDDIAYYVGVSRRQLERLFKQY---LG----------TVPSKYYLEL-----------RLN 62 (113)
T ss_dssp HHHHHHHHHHTC-SSSCCCHHHHHHHHTSCHHHHHHHHHHH---TS----------SCHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHhh-hcCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHH-----------HHH
Confidence 444555565433 2456999999999999999998876653 33 4566666654 111
Q ss_pred HHHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc-CHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 010925 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMAR 204 (497)
Q Consensus 127 ~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~V-se~TIrkr~kE~~~t~~~~Lt~~ef~~~ 204 (497)
.|.+++. .-..++.+||..+|- +.....+.++... .+||.+|++.
T Consensus 63 ~A~~lL~----------------------------~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~~ 108 (113)
T 3oio_A 63 RARQLLQ----------------------------QTSKSIVQIGLACGFSSGPHFSSTYRNHF-----NITPREERAQ 108 (113)
T ss_dssp HHHHHHH----------------------------HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHT
T ss_pred HHHHHHH----------------------------cCCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHHh
Confidence 2222211 124678888888887 4557778887764 4678888765
No 150
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=50.20 E-value=4.8 Score=32.81 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=24.6
Q ss_pred CCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
..+ |..++++.+|||..||++.|+.|..
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~ 61 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKS 61 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445 8999999999999999999998854
No 151
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=50.04 E-value=20 Score=28.26 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010925 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 93 (497)
Q Consensus 61 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 93 (497)
|.|.++.|||+.++|+..++.+-...|.+.=-|
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVL 54 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 789999999999999999998888888775434
No 152
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=49.85 E-value=13 Score=31.65 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHH
Q 010925 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 111 (497)
Q Consensus 61 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~R 111 (497)
..+.++.+||..+|++...|.+.|++. +| ..|..|+.+
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~---~G----------~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT---TG----------MTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH---TS----------SCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHH
Confidence 578999999999999999999887754 33 457677654
No 153
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=49.85 E-value=21 Score=31.00 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 143 GRKPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 143 GR~P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+..|.-|.-||+=+-+ ..|+. .|+++||+.+|||..||-..+..
T Consensus 6 ~~~~~~Il~aA~~lf~-~~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (192)
T 2zcm_A 6 HHMKDKIIDNAITLFS-EKGYDGTTLDDISKSVNIKKASLYYHYDN 50 (192)
T ss_dssp --CHHHHHHHHHHHHH-HHCTTTCCHHHHHHHTTCCHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHHHH-HcCcccCCHHHHHHHhCCChHHHHHHCCC
Confidence 4556667777776555 36874 99999999999999999877753
No 154
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=49.79 E-value=17 Score=31.15 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+-+ -+|+. .|+++||+.+|||..|+-..|..
T Consensus 12 ~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (188)
T 3qkx_A 12 QIFSATDRLMA-REGLNQLSMLKLAKEANVAAGTIYLYFKN 51 (188)
T ss_dssp HHHHHHHHHHH-HSCSTTCCHHHHHHHHTCCHHHHHHHSSS
T ss_pred HHHHHHHHHHH-hcCcccCCHHHHHHHhCCCcchHHHHcCC
Confidence 35555555444 36875 99999999999999999877654
No 155
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=49.71 E-value=16 Score=29.06 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=25.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
-..+..+|++.++|+.+||++.++.|.+.
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999998653
No 156
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=49.62 E-value=40 Score=31.01 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHHHHHhcC----------CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 43 RRTEQVQASCLYLACRQKS----------KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 43 R~~~~VaAACLYiACR~e~----------~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.+...-.|..|+.-+...+ .|.+..+||+.+|++..++.|+.++|.+.
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 147 YNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp SCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 4555556666555554433 58899999999999999999999999885
No 157
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=49.29 E-value=16 Score=32.51 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999754
No 158
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=48.41 E-value=14 Score=33.04 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 47 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 47 ~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.-+-+.+|+|-. .+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 13 yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 13 VAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 334456777764 3678999999999999999999999999885
No 159
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=48.35 E-value=19 Score=32.97 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=26.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++.|+.+||..+|+|..|+.+.+++|.+.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 46899999999999999999999999753
No 160
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=47.94 E-value=28 Score=29.30 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=26.8
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+-..|..+||+.++|+..++++-+..+...
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567899999999999999999999998653
No 161
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=47.89 E-value=21 Score=32.35 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=26.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999753
No 162
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=47.81 E-value=17 Score=32.76 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=26.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
..+.|+.+||..+|+|..|+.+-+++|.+
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGD 204 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999864
No 163
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=47.52 E-value=20 Score=33.63 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+++|+.+||..+|+|..||.+-+++|.+.
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999753
No 164
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=47.41 E-value=23 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCCCCHhhHHHHh-ccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~-~Vse~TIrkr~kE~~~ 190 (497)
.-+.++.+|++.+ +|+.+||.++++.+.+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4568999999999 9999999999999964
No 165
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=46.98 E-value=13 Score=31.34 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=23.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+|||+.||++++....
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458999999999999999998887754
No 166
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=46.64 E-value=14 Score=30.47 Aligned_cols=26 Identities=4% Similarity=0.086 Sum_probs=22.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
...|.++||..+|||..||++++..-
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rA 63 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKA 63 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56999999999999999999876553
No 167
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=46.60 E-value=23 Score=29.78 Aligned_cols=102 Identities=7% Similarity=0.036 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHH
Q 010925 45 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 124 (497)
Q Consensus 45 ~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V 124 (497)
...+..++-||-... ..+.++.++|+.++++...|.+.|++. +| ..|..||.+. -
T Consensus 10 ~~~i~~~~~~i~~~~-~~~~sl~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~l~~~-----------R 64 (129)
T 1bl0_A 10 AITIHSILDWIEDNL-ESPLSLEKVSERSGYSKWHLQRMFKKE---TG----------HSLGQYIRSR-----------K 64 (129)
T ss_dssp HHHHHHHHHHHHTTT-TSCCCCHHHHHHSSSCHHHHHHHHHHH---HS----------SCHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHHcc-CCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHH-----------H
Confidence 344555555665433 456999999999999999998877654 33 3466666554 1
Q ss_pred HHHHHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccC-HHHHHHHHHHHhcCCCCCCCHHHHHH
Q 010925 125 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMA 203 (497)
Q Consensus 125 ~~~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vs-e~TIrkr~kE~~~t~~~~Lt~~ef~~ 203 (497)
...|..++.. -..++.+||..+|-+ .....+.++... .+||.+|.+
T Consensus 65 l~~A~~lL~~----------------------------~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~ 111 (129)
T 1bl0_A 65 MTEIAQKLKE----------------------------SNEPILYLAERYGFESQQTLTRTFKNYF-----DVPPHKYRM 111 (129)
T ss_dssp HHHHHHHHHH----------------------------CCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHT
T ss_pred HHHHHHHHHc----------------------------CCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHH
Confidence 1222222211 235888899999875 567888888874 478899987
Q ss_pred H
Q 010925 204 R 204 (497)
Q Consensus 204 ~ 204 (497)
.
T Consensus 112 ~ 112 (129)
T 1bl0_A 112 T 112 (129)
T ss_dssp C
T ss_pred H
Confidence 6
No 168
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=46.48 E-value=58 Score=27.08 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=26.4
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.+|++.+||.+.++.+.+
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 45799999999999999999999999864
No 169
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=46.47 E-value=19 Score=33.12 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
-++|+.+||+.+|+|.+||+++++.+.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999999999653
No 170
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=46.44 E-value=21 Score=31.91 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 153 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 153 aLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+|||..-.+-.+|.++||+.++|+...+++-+..|...
T Consensus 33 L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 33 TLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 455665433456999999999999999999999998653
No 171
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=46.07 E-value=13 Score=27.90 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=21.2
Q ss_pred CCHhhHHHHhccCHHHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
++.+||+..+|||.+||.+..++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 68999999999999999998876
No 172
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=45.93 E-value=16 Score=31.47 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=24.2
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
..+..+||+.+||+..||++.++.+..
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999999988764
No 173
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.75 E-value=20 Score=29.81 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 146 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 146 P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
+.-+.-+.-||-.... .++++.+||+.+|+|+.++.+.+++. .+|+.+|....
T Consensus 6 ~~~~~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~~------G~s~~~~~~~~ 58 (120)
T 3mkl_A 6 PNMRTRVCTVINNNIA-HEWTLARIASELLMSPSLLKKKLREE------ETSYSQLLTEC 58 (120)
T ss_dssp CCHHHHHHHHHHTSTT-SCCCHHHHHHHTTCCHHHHHHHHHHT------TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CCCCHHHHHHHHCcCHHHHHHHHHHc------CCCHHHHHHHH
Confidence 3344444555544433 47999999999999999999988763 47889987653
No 174
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=45.65 E-value=24 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=25.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
..+|+.+|++.++++.+||.+.++.+.+
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 3799999999999999999999999864
No 175
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=45.65 E-value=39 Score=28.36 Aligned_cols=53 Identities=4% Similarity=0.026 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
.-|.-+.-||-... ..++++.+||+.+|+|+.++.+.+++.. .+|+.+|....
T Consensus 11 ~~i~~~~~~i~~~~-~~~~sl~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~l~~~ 63 (129)
T 1bl0_A 11 ITIHSILDWIEDNL-ESPLSLEKVSERSGYSKWHLQRMFKKET-----GHSLGQYIRSR 63 (129)
T ss_dssp HHHHHHHHHHHTTT-TSCCCCHHHHHHSSSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 33444444554433 3459999999999999999999999874 36888887653
No 176
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=45.25 E-value=19 Score=31.48 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|.-||+=+-+. +|+..|+.+||+.+|||..||-..+..
T Consensus 18 ~~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tlY~~F~s 57 (194)
T 2q24_A 18 DKILAAAVRVFSE-EGLDAHLERIAREAGVGSGTLYRNFPT 57 (194)
T ss_dssp HHHHHHHHHHHHH-HCTTCCHHHHHHHTTCCHHHHHHHCCS
T ss_pred HHHHHHHHHHHHh-cCcCCCHHHHHHHhCCChHHHHHHcCC
Confidence 3455555544432 577799999999999999999876643
No 177
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=45.21 E-value=21 Score=29.28 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-..++.+|++.+|++.+||.+.++.|.+
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999864
No 178
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=44.86 E-value=24 Score=29.89 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+||+.+||+.+||++.++.|..
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999999854
No 179
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=44.83 E-value=21 Score=29.84 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+|+|+.||++++....
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 568999999999999999998877654
No 180
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=44.76 E-value=13 Score=32.45 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.+|||..+||++.||++++.--.
T Consensus 108 ~g~s~~EIA~~lgis~~tV~~~l~rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEVETLVTEAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999999987764
No 181
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=44.59 E-value=25 Score=29.09 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred CCHhhHHHHh-ccCHHHHHHHHHHHhcC
Q 010925 165 FSKSDIVKIV-HICEATLMKRLIEFENT 191 (497)
Q Consensus 165 ~t~~eIa~v~-~Vse~TIrkr~kE~~~t 191 (497)
+|+.+|++.+ ||+..||.++++.+.+.
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 3499999999 99999999999999653
No 182
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=44.54 E-value=16 Score=31.12 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.++||..+|||..||++++....
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 457999999999999999998887754
No 183
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=44.52 E-value=16 Score=30.02 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.9
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
..|.+|||..++|++.||+.++..+.
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46889999999999999998887764
No 184
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=44.52 E-value=44 Score=27.48 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=37.0
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHh-CcChHHHHHHHHHHHHHhc
Q 010925 52 CLYLACRQKSK-PFLLIDFSNYL-NINVYELGAVYLQLCQVLY 92 (497)
Q Consensus 52 CLYiACR~e~~-prtL~DIa~v~-~vsv~~Lgr~yk~L~~~L~ 92 (497)
-|..+|++.|. +.++.-||..+ +-+...+...|.+|.+.+.
T Consensus 43 ~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 57889999877 99999999999 5999999999999999875
No 185
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=44.29 E-value=14 Score=31.63 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+=+.+ -.|+ ..|+++||+.+||+..||-..|.
T Consensus 16 ~Il~aa~~l~~-~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 54 (177)
T 3kkc_A 16 AIYNAFISLLQ-ENDYSKITVQDVIGLANVGRSTFYSHYE 54 (177)
T ss_dssp HHHHHHHHHTT-TSCTTTCCHHHHHHHHCCCHHHHTTTCS
T ss_pred HHHHHHHHHHH-hCChhHhhHHHHHHHhCCcHhhHHHHcC
Confidence 34444544433 2687 59999999999999999965553
No 186
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=44.12 E-value=21 Score=25.61 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 94 (497)
..+..|||..++++..++......+.+.|+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 35779999999999999999999999998764
No 187
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=44.03 E-value=32 Score=30.35 Aligned_cols=51 Identities=10% Similarity=-0.061 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHHhcC---------CCCCHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010925 43 RRTEQVQASCLYLACRQKS---------KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 93 (497)
Q Consensus 43 R~~~~VaAACLYiACR~e~---------~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 93 (497)
.+...-.|..|+.-+...+ .|.+..+||+.+|++..++.|+.++|.+.=-|
T Consensus 110 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I 169 (195)
T 3b02_A 110 GELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLI 169 (195)
T ss_dssp SCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSE
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 4455555555544444332 47899999999999999999999999885333
No 188
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=43.68 E-value=48 Score=27.74 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.2
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 160 THGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 160 ~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.++ .+|+.+|++.++++.+||.+.++.+.+-
T Consensus 51 ~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 344 8999999999999999999999998653
No 189
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=43.57 E-value=42 Score=34.83 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=47.9
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHhcc--ccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHH
Q 010925 110 HKFTDRLLPGGNKKVCDTARDILASMKR--DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 172 (497)
Q Consensus 110 ~Rf~~~L~~~~~~~V~~~A~~Lv~~~~~--~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~ 172 (497)
..+|.+|.. ...++....|.+++.... ..+..+|+-.=|.-+|||+.|+..+..+|.++|..
T Consensus 287 ~~LC~~L~~-~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~ 350 (411)
T 4ell_A 287 NTLCERLLS-EHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 350 (411)
T ss_dssp HHHHHHHCT-TSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 346888862 233566777777777553 46888999999999999999999998888888776
No 190
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=43.45 E-value=11 Score=28.48 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.1
Q ss_pred CCHhhHHHHhccCHHHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+|.+++|..+|||..||.+..+.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 57899999999999999877654
No 191
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.42 E-value=22 Score=27.39 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHh-----ccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIV-----HICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~-----~Vse~TIrkr~kE~~~ 190 (497)
...|..+|++.+ +|+.+||.+-++.|.+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 579999999999 9999999999998864
No 192
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=43.25 E-value=23 Score=31.15 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+-+ -.|+..|+++||+.+||+..||-..+..
T Consensus 18 Il~aA~~lf~-~~G~~~t~~~IA~~agvs~~tlY~~F~s 55 (196)
T 2qwt_A 18 VLEVAYDTFA-AEGLGVPMDEIARRAGVGAGTVYRHFPT 55 (196)
T ss_dssp HHHHHHHHHH-HTCTTSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH-hcCCCCCHHHHHHHhCCCHHHHHHHCCC
Confidence 4444444333 3578899999999999999999877644
No 193
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=43.21 E-value=20 Score=27.78 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=21.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHH
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
....|+.++|+.+||+.+||.+...
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4568999999999999999996643
No 194
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=43.09 E-value=22 Score=31.97 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++.|+.+||..+|++..|+.+-+++|.+-
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 35799999999999999999999999753
No 195
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=42.90 E-value=22 Score=30.06 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=25.6
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 160 THGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 160 ~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+..-..|.++|++.+|+|.+||.+--+.+..
T Consensus 54 lL~~G~SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 54 MLTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCccHHHHHHHHHHHHc
Confidence 3334499999999999999999988777765
No 196
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=42.83 E-value=24 Score=31.26 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+-+. +|+ ..|+++||+.+||+..||-..|..
T Consensus 33 ~~Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~s 73 (222)
T 3bru_A 33 QSLIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFRN 73 (222)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCCC
Confidence 3455555555543 787 489999999999999999877654
No 197
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=42.73 E-value=13 Score=36.61 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=22.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-+.|++|||+.+|||.+|+.+.|+.
T Consensus 8 ~~~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 8 QYGTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp CTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHCC
Confidence 4579999999999999999999975
No 198
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=42.69 E-value=27 Score=32.11 Aligned_cols=31 Identities=3% Similarity=0.063 Sum_probs=27.3
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcCC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 192 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~ 192 (497)
+-.+|..|+|+.++||+.|||+=+.||..+.
T Consensus 24 ~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 24 NPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 4468999999999999999999999997653
No 199
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=42.58 E-value=27 Score=27.98 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=29.0
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 94 (497)
..+..+||..+++++.++......+.+.|++.
T Consensus 44 G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 44 GFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 46899999999999999999999999999864
No 200
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=42.17 E-value=14 Score=29.04 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-..|+.+|++.+|++.+||.+.++.+.+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999864
No 201
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=42.13 E-value=22 Score=28.87 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-..++.+|++.+|++.+||.+.++.|.+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999999999999999999864
No 202
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=42.07 E-value=18 Score=31.48 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 153 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 153 aLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+|||..-.+..+|.++||+..+|+..+|++-+..|...
T Consensus 17 L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 17 MISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345554322346899999999999999999999998653
No 203
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=41.98 E-value=25 Score=32.69 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 154 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 154 LylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
=|..+.-.|+.-+|+++|+.+|||+..|.+.++-..
T Consensus 32 ~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~ 67 (189)
T 3mky_B 32 RYASRLQNEFAGNISALADAENISRKIITRCINTAK 67 (189)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHhc
Confidence 356666688999999999999999999999998874
No 204
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=41.93 E-value=25 Score=29.27 Aligned_cols=27 Identities=4% Similarity=0.065 Sum_probs=24.9
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+.++.+|++.+|++.+||.+.++.|.+
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578899999999999999999999965
No 205
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=41.79 E-value=32 Score=30.61 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHhc--------------cCHHHHHHHHHHHhc
Q 010925 149 LCGAALYVSALTHGLKFSKSDIVKIVH--------------ICEATLMKRLIEFEN 190 (497)
Q Consensus 149 IaaAaLylAar~~g~~~t~~eIa~v~~--------------Vse~TIrkr~kE~~~ 190 (497)
+-+|.++-..-+.| .....+++...| ||..|||+.|..|..
T Consensus 53 ~ria~~lr~~i~~g-~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~ 107 (150)
T 2v7f_A 53 YRVASILRRVYLDG-PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEA 107 (150)
T ss_dssp HHHHHHHHHHHHHC-SBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHH
Confidence 33444444444455 666699999999 999999999998853
No 206
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=41.51 E-value=51 Score=29.92 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=37.5
Q ss_pred CCCCChHHHHHHHHHHHHHhc----CCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 40 TKGRRTEQVQASCLYLACRQK----SKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 40 ~rGR~~~~VaAACLYiACR~e----~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
....+...-.|..|+.-++.. ..|.+..+||+.+|++..++.|+.++|.+.
T Consensus 159 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 159 EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 344556666666554433332 257899999999999999999999999875
No 207
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=41.44 E-value=40 Score=27.43 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCChHHHHH--HHHHHHHHhcCCCCCHHHHHHHh-CcChHHHHHHHHHHHHHhcc
Q 010925 21 DEIVHVAKRFYGIAVARNFTKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYL-NINVYELGAVYLQLCQVLYI 93 (497)
Q Consensus 21 ~~i~d~A~~iyk~a~~~~~~rGR~~~~VaA--ACLYiACR~e~~prtL~DIa~v~-~vsv~~Lgr~yk~L~~~L~i 93 (497)
+.|++..+.+|..-.+.=..++|+...+.| .+.|++-.. +..+|.+|+..| |.+-.++..+++++.+.+.-
T Consensus 4 ~~I~~~Va~~f~i~~~dl~s~~R~~~i~~aRqiamyL~r~~--t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 4 DNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKEL--TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp HHHHHHHHHHTTCCHHHHHSCCCCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHhCCCCCchhHHHHHHHHHHHHHH--HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 344455555554333222234555444433 367776554 467899999999 89999999999999997753
No 208
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=41.22 E-value=2.2e+02 Score=29.20 Aligned_cols=26 Identities=0% Similarity=-0.041 Sum_probs=18.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
...|+.+||..+|||..|||++...-
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rA 404 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKA 404 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 57999999999999999999776553
No 209
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=41.22 E-value=13 Score=35.93 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=22.1
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+.|.+|||+.+|||.+|+++.|+.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 469999999999999999999975
No 210
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=41.14 E-value=31 Score=25.55 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=21.6
Q ss_pred CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 166 SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 166 t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+..+|+.+||+..|+.++++.+.-
T Consensus 34 n~~~aA~~LGisr~tL~rklkk~gi 58 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLNI 58 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhCC
Confidence 4668899999999999999998753
No 211
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.11 E-value=33 Score=30.33 Aligned_cols=42 Identities=10% Similarity=-0.117 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+-.-|..||+=+.+..= ...|+++||+.+||+..||-..|..
T Consensus 21 ~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~s 62 (215)
T 2hku_A 21 TRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYGS 62 (215)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCC
Confidence 44556666666666544 7799999999999999999877753
No 212
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=40.84 E-value=18 Score=25.91 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=29.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~~ 51 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN-----KYNPSLQLALKIAY 51 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT-----SCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4689999999999999999886542 23457777776643
No 213
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=40.68 E-value=22 Score=28.47 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=22.8
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 159 LTHGLKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 159 r~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
..++.+ +.+.|+.+||+..|+.++++.+.
T Consensus 61 ~~~~gn--~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 61 RHTQGH--KQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHTTTC--TTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhCCC--HHHHHHHHCcCHHHHHHHHHHhC
Confidence 344444 45789999999999999999873
No 214
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=40.64 E-value=32 Score=25.43 Aligned_cols=33 Identities=6% Similarity=0.103 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 94 (497)
...++.|||..++++..++........+.|...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988888888743
No 215
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=40.62 E-value=15 Score=26.70 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.7
Q ss_pred HhhHHHHhccCHHHHHHHHHHHh
Q 010925 167 KSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 167 ~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
+.+||...||+..||++..+.+.
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999987653
No 216
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=40.46 E-value=33 Score=29.73 Aligned_cols=44 Identities=9% Similarity=-0.044 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 44 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 44 ~~~~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
+...-+-+.+|+|-+ .+ + +..+||+..+++...|.+.+..|.+.
T Consensus 7 ~~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 7 RLAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 445556677788754 34 4 99999999999999999999999874
No 217
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=40.39 E-value=34 Score=28.85 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=33.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 204 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~ 204 (497)
..+.++.+||..+|+|..++.+.++... .+|+.+|...
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~-----G~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATT-----GMTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 4679999999999999999999998873 5788888765
No 218
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=40.19 E-value=27 Score=30.92 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+-+. .|+. .|+++||+.+||+..||-..+..
T Consensus 19 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 19 AVLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 455555554443 6875 99999999999999999887754
No 219
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=40.04 E-value=16 Score=26.96 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.5
Q ss_pred CCHhhHHHHhccCHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRL 185 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~ 185 (497)
.|+.++|+.+|||..||.+..
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999999875
No 220
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.96 E-value=46 Score=24.51 Aligned_cols=32 Identities=13% Similarity=-0.060 Sum_probs=28.4
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 94 (497)
..+..+||..++++..++......+.+.|+..
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 34899999999999999999999999988763
No 221
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=39.93 E-value=18 Score=32.66 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
++.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 45899999999999999999999999753
No 222
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=39.86 E-value=37 Score=31.04 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=26.2
Q ss_pred C-CCCHhhHHHHhccCH-HHHHHHHHHHhcC
Q 010925 163 L-KFSKSDIVKIVHICE-ATLMKRLIEFENT 191 (497)
Q Consensus 163 ~-~~t~~eIa~v~~Vse-~TIrkr~kE~~~t 191 (497)
+ +.|+.+||..+|+|. .|+.+-+++|.+.
T Consensus 167 ~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 167 LDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 5 789999999999999 7999999999754
No 223
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=39.73 E-value=43 Score=29.95 Aligned_cols=29 Identities=3% Similarity=-0.024 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.|.+..+||+.+|++..++.|..++|.+.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 58999999999999999999999999875
No 224
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=39.70 E-value=31 Score=29.99 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=26.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
-..++.+|++.+||+..|+.++++.|.+.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999643
No 225
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=39.62 E-value=17 Score=27.67 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=29.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g-----~~~~~~~~~~~ia~ 62 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG-----INALNAYNAALLAK 62 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4679999999999999999987643 23456676666653
No 226
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=39.50 E-value=29 Score=28.62 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=26.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999864
No 227
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=39.26 E-value=16 Score=35.38 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=26.4
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 204 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~ 204 (497)
.|.+|||+.+|||.+|+++.|+. ...++.+--.++
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~-----~~~vs~~tr~rV 35 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINK-----TRFVAEETRNAV 35 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT-----CSCCCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC-----cCCCCHHHHHHH
Confidence 37899999999999999999983 234555444444
No 228
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=39.21 E-value=19 Score=29.06 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-+.+..+|++.+|++.+|+.+.++.+.+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~ 67 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRG 67 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999964
No 229
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=38.76 E-value=19 Score=26.84 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=31.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKE 207 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~d 207 (497)
...|+.++|+.+||+..||.+..+- ....+++.+..+++-
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~ia~~ 59 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN-----DVQPSLETLFDIAEA 59 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT-----SSCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHHH
Confidence 3579999999999999999987643 245788888877643
No 230
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=38.50 E-value=43 Score=29.75 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHHhcC---CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 43 RRTEQVQASCLYLACRQKS---KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 43 R~~~~VaAACLYiACR~e~---~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.+...-.|..|..-+...+ .|.+..+||+.+|++..++.|..++|.+.
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4445555555555555443 48899999999999999999999999885
No 231
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=38.23 E-value=36 Score=29.23 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+.+. .|+. .|+++||+.+|||..||-+.|..
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 45 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVKLSESSKGNLYYHFKT 45 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHTTCCHHHHHHHTSS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 44445444443 6765 99999999999999999877754
No 232
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=38.18 E-value=38 Score=27.75 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-..++.+|++.++++.+||.+.++.|.+
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999854
No 233
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=38.09 E-value=36 Score=26.98 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=25.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
..+|+.+|++.++++.+|+.+.++.|.+
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4489999999999999999999998854
No 234
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=38.03 E-value=58 Score=24.90 Aligned_cols=43 Identities=2% Similarity=0.075 Sum_probs=31.3
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 160 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 160 ~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
+.....|+.++|+.+||+..||.+..+-- ....+++.+.++++
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~g~----~~~~~~~~l~~la~ 69 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMRGK----IDLFSLESLIDMIT 69 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHTTC----GGGCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCC----CCCCCHHHHHHHHH
Confidence 34467899999999999999999865421 11367777777753
No 235
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=38.00 E-value=27 Score=31.07 Aligned_cols=29 Identities=7% Similarity=0.226 Sum_probs=26.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45799999999999999999999999754
No 236
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=37.97 E-value=23 Score=29.46 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=26.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.-+.++.+|++.+|++.+||.+.++.+.+.
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 346799999999999999999999998643
No 237
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=37.96 E-value=22 Score=28.73 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-+.++.+|++.+|++.+||.+.++.+.+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999854
No 238
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=37.85 E-value=32 Score=29.98 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+.+. .|+ ..|+.+||+.+|||..||-..|..
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~s 57 (212)
T 3knw_A 17 QHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFES 57 (212)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCCC
Confidence 4555555555443 576 599999999999999999877653
No 239
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=37.62 E-value=23 Score=28.75 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=24.1
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 165 FSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.|+.+||...||+..||+++.+.+...
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~~~ 57 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHERD 57 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 578899999999999999999998653
No 240
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=37.38 E-value=22 Score=31.16 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
+-.-|..||+=+-..-+|+ ..|+++||+.+|||..||-..+.
T Consensus 25 ~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 67 (212)
T 3nxc_A 25 RREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFP 67 (212)
T ss_dssp THHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCC
Confidence 3445655555433334586 49999999999999999976554
No 241
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=37.20 E-value=38 Score=28.14 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=26.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-+.|+.+|++.+|++.+|+.+.++.+.+
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45799999999999999999999999864
No 242
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=37.20 E-value=40 Score=29.13 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCCCCHhhHHHHh-ccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIV-HICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~-~Vse~TIrkr~kE~~~t 191 (497)
.-..+..|+++.+ ||+..|+.+++++|.+.
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHC
Confidence 4578999999999 99999999999999643
No 243
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=37.14 E-value=53 Score=25.92 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=32.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|..+||+..|+..++..+.. .....+++.+..+++
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~-g~~~p~~~~l~~la~ 55 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEK-GKHAPDFEMANRLAK 55 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHH-TSSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHC-CCCCCCHHHHHHHHH
Confidence 3579999999999999996666666643 335678888887764
No 244
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=37.01 E-value=21 Score=25.67 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
...|+.++|+.+||+..||.+..+- ....+++.+..++
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~ 54 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALS 54 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCBHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 3579999999999999999876542 2334666666554
No 245
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=36.93 E-value=35 Score=28.18 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHH
Q 010925 47 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 126 (497)
Q Consensus 47 ~VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~ 126 (497)
.+..++-||--... .++++.+||..++++...|.+.|+. . | ..|..||.+. -..
T Consensus 8 ~~~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~---~-G----------~s~~~~~~~~-----------Rl~ 61 (120)
T 3mkl_A 8 MRTRVCTVINNNIA-HEWTLARIASELLMSPSLLKKKLRE---E-E----------TSYSQLLTEC-----------RMQ 61 (120)
T ss_dssp HHHHHHHHHHTSTT-SCCCHHHHHHHTTCCHHHHHHHHHH---T-T----------CCHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHHhcc-CCCCHHHHHHHHCcCHHHHHHHHHH---c-C----------CCHHHHHHHH-----------HHH
Confidence 44455556654443 3899999999999999999887754 2 4 3466666544 111
Q ss_pred HHHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc-CHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 010925 127 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMAR 204 (497)
Q Consensus 127 ~A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~V-se~TIrkr~kE~~~t~~~~Lt~~ef~~~ 204 (497)
.|..++ ..-..++.+||..+|- +.....+.++.+. .+||.+|++.
T Consensus 62 ~A~~lL----------------------------~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~~ 107 (120)
T 3mkl_A 62 RALQLI----------------------------VIHGFSIKRVAVSCGYHSVSYFIYVFRNYY-----GMTPTEYQER 107 (120)
T ss_dssp HHHHHH----------------------------TSTTCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHH----------------------------HcCCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 222221 1234678888888886 4667888888774 4788888876
No 246
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=36.72 E-value=1.2e+02 Score=24.72 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=27.6
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYI 93 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 93 (497)
|.++.+||+.++++..++.+....|.+.--+
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~glv 82 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRGLI 82 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 8999999999999999999999999886333
No 247
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=36.70 E-value=80 Score=25.93 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 51 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 51 ACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
..|++..+..+.|.++.+||..++++..++.+..+.|.+.
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 3444445554558999999999999999999999999885
No 248
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=36.68 E-value=17 Score=27.70 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHHhCcChHHHHHH
Q 010925 61 SKPFLLIDFSNYLNINVYELGAV 83 (497)
Q Consensus 61 ~~prtL~DIa~v~~vsv~~Lgr~ 83 (497)
....++.|||..+||+..++.++
T Consensus 7 ~~~~t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 7 ETAATMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp --CCCHHHHHHHTTCCHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Confidence 34579999999999999998874
No 249
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=36.63 E-value=25 Score=33.05 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=26.6
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.|.+++..+++..+|||..|||..|+.|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VReAL~~L~~ 75 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVREALRQLEA 75 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999853
No 250
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.62 E-value=53 Score=24.63 Aligned_cols=33 Identities=6% Similarity=-0.061 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 94 (497)
...+..+||..++++..++......+.+.|+..
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 346889999999999999999999999988763
No 251
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=36.62 E-value=21 Score=25.96 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
...|+.++|+.+||+..||.+..+-
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4679999999999999999887654
No 252
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=36.62 E-value=34 Score=29.22 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+.+. .|+ ..|+++||+.+||+..|+-+.|..
T Consensus 12 ~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 52 (195)
T 3ppb_A 12 QAILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFPS 52 (195)
T ss_dssp HHHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 3455666655554 686 599999999999999999877654
No 253
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=36.60 E-value=40 Score=28.44 Aligned_cols=30 Identities=7% Similarity=0.135 Sum_probs=26.7
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
++-.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 51 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 51 QAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp STTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 455689999999999999999999999864
No 254
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.51 E-value=29 Score=30.55 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.+|||..+|+|+.||++++.-..
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468999999999999999998887653
No 255
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=36.40 E-value=30 Score=34.26 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=27.2
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+-.+|..++|+.++||+.||++.++.+.+.
T Consensus 16 ~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 16 NGEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 3456899999999999999999999998753
No 256
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=36.32 E-value=29 Score=30.10 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ ..|+. .|+++||+.+|||..||-..+..
T Consensus 11 ~Il~aA~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 50 (195)
T 2dg7_A 11 RLKRAALELYS-EHGYDNVTVTDIAERAGLTRRSYFRYFPD 50 (195)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHTTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-hcCccccCHHHHHHHhCCCHHHHHHHcCC
Confidence 44455544443 36875 99999999999999999877754
No 257
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=36.25 E-value=36 Score=29.46 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+-+ -+|+ ..|+++||+.+||+..||-..|..
T Consensus 16 ~Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (202)
T 3lwj_A 16 KILTCSLDLFI-EKGYYNTSIRDIIALSEVGTGTFYNYFVD 55 (202)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHHCSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 35555554444 3587 599999999999999999877654
No 258
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=36.21 E-value=23 Score=25.59 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=21.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
...|+.++|..+||+..||.+..+-
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999987654
No 259
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=36.14 E-value=15 Score=35.72 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+.|.+|||+.+|||.+|+++.|+.
T Consensus 10 ~~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 10 PLTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 479999999999999999998864
No 260
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=36.07 E-value=74 Score=28.56 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=36.1
Q ss_pred CChHHHHHHHH-HHHHHhc--------CCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 43 RRTEQVQASCL-YLACRQK--------SKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 43 R~~~~VaAACL-YiACR~e--------~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.+...-.|..| .++-+.. ..|.|..+||+.+|++..++.|..++|.+.
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 34455555555 4454431 358899999999999999999999999875
No 261
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=35.87 E-value=1.1e+02 Score=25.23 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=25.1
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 599999999999999999999999864
No 262
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.79 E-value=43 Score=25.08 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHHhc
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLY 92 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~ 92 (497)
.+.+..|||+.++++..++........+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999887777777665
No 263
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=35.67 E-value=48 Score=28.81 Aligned_cols=40 Identities=13% Similarity=-0.043 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+.+. .|+ ..|+++||+.+||+..||-..+..
T Consensus 19 ~~Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 59 (213)
T 2qtq_A 19 DLLLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFGN 59 (213)
T ss_dssp HHHHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcCC
Confidence 3455555555443 687 599999999999999999887754
No 264
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=35.46 E-value=45 Score=28.00 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=25.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-..++.+|++.+|++.+||.+.++.|.+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999965
No 265
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=35.45 E-value=46 Score=26.04 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 93 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 93 (497)
...|+.+||..+++++.++........+.|..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988888888764
No 266
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=35.44 E-value=29 Score=29.05 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-..++.+|++.+|++.+||.+.++.|.+
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34689999999999999999999999864
No 267
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.32 E-value=45 Score=29.36 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+=+-+ -+|+. .|+.+||+.+|||..||-..+.
T Consensus 15 ~Il~aA~~lF~-~~Gy~~ts~~~IA~~aGvsk~tlY~~F~ 53 (202)
T 2i10_A 15 VALQTAMELFW-RQGYEGTSITDLTKALGINPPSLYAAFG 53 (202)
T ss_dssp HHHHHHHHHHH-HHTTTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHH-HhCcccCCHHHHHHHhCCChHHHHHHhC
Confidence 34444444333 36876 8999999999999999987764
No 268
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=35.23 E-value=38 Score=29.45 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+=+-+ -.|+. .|+.+||+.+|||..||-..|.
T Consensus 16 ~Il~aA~~lf~-e~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 16 AILSASYELLL-ESGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HcCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 34444444433 36874 8999999999999999987764
No 269
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=35.21 E-value=39 Score=29.16 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..|++=+.+ -.|+ ..|+++||+.+||+..||-..+..
T Consensus 18 ~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (203)
T 3f1b_A 18 QMLDAAVDVFS-DRGFHETSMDAIAAKAEISKPMLYLYYGS 57 (203)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHTTSCHHHHHHHCCS
T ss_pred HHHHHHHHHHH-HcCcccccHHHHHHHhCCchHHHHHHhCC
Confidence 35555554443 3586 599999999999999999877644
No 270
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=35.18 E-value=34 Score=26.89 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=30.2
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 160 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 160 ~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
.....+|+.++|+.+||+..||.+..+- ....+++.+..++
T Consensus 18 r~~~glsq~~lA~~~gis~~~is~~e~G-----~~~p~~~~l~~ia 58 (94)
T 2kpj_A 18 IAKSEKTQLEIAKSIGVSPQTFNTWCKG-----IAIPRMGKVQALA 58 (94)
T ss_dssp HTTSSSCHHHHHHHHTCCHHHHHHHHTT-----SCCCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhC-----CCCCCHHHHHHHH
Confidence 3445689999999999999999886542 2345666666664
No 271
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=35.17 E-value=44 Score=29.02 Aligned_cols=38 Identities=5% Similarity=0.004 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 153 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 153 aLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+|||. ..+-.+|.++||+..+|+..+|++-+..|...
T Consensus 20 L~~La~-~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 20 LSILKN-NPSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHh-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 334444 23456899999999999999999999998653
No 272
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=34.95 E-value=26 Score=27.19 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=20.1
Q ss_pred CHhhHHHHhccCHHHHHHHHHH
Q 010925 166 SKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 166 t~~eIa~v~~Vse~TIrkr~kE 187 (497)
++.++|+.+|||..||.+++.-
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5999999999999999999764
No 273
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.91 E-value=48 Score=27.50 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 455799999999999999999999999854
No 274
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=34.74 E-value=23 Score=26.64 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=26.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
..+|+.++|+.+||+..||.+..+- ....+++.+..++
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g-----~~~p~~~~l~~ia 51 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS-----ETAPVVVKYIAFL 51 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC-----CSCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 4689999999999999999875432 2235555555553
No 275
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=34.65 E-value=45 Score=30.16 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHHHHh------cCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 43 RRTEQVQASCLYLACRQ------KSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 43 R~~~~VaAACLYiACR~------e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.+...-.|..|+--+.. ...|.|..+||+.+|++..+|.|..++|.+.
T Consensus 152 ~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 152 QTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp CCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 44555555555443332 2468899999999999999999999998875
No 276
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=34.65 E-value=39 Score=28.10 Aligned_cols=29 Identities=3% Similarity=0.044 Sum_probs=26.4
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 55799999999999999999999999864
No 277
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=34.62 E-value=32 Score=30.00 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+-+ -.|+. .|+.+||+.+||+..||-..+..
T Consensus 12 ~Il~aA~~lf~-~~G~~~~t~~~IA~~agvs~~tlY~~F~s 51 (199)
T 2o7t_A 12 HIITTTCNLYR-THHHDSLTMENIAEQAGVGVATLYRNFPD 51 (199)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HCCCccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 34444544443 36875 89999999999999999877643
No 278
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=34.51 E-value=26 Score=33.06 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=24.4
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.++ |..++|+..|||..|||+.|..|..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 7999999999999999999999854
No 279
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=34.48 E-value=25 Score=26.16 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=30.6
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
....|+.++|+.+||+..||.+..+- .....+++.+..+++
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g----~~~~~~~~~l~~ia~ 58 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEG----RSKRPTITTIRKVCG 58 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCT----TCCCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 35689999999999999999886532 112577787777754
No 280
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=34.46 E-value=58 Score=29.18 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=22.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
..|+.+||+-+||+..||.++.+.
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc
Confidence 589999999999999999988774
No 281
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=34.44 E-value=25 Score=26.08 Aligned_cols=38 Identities=3% Similarity=0.052 Sum_probs=28.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
...|+.++|+.+||+..||.+..+ .....+++.+..++
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~la 59 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER-----GDRNISLINIHKIC 59 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT-----TCSCCBHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC-----CCCCCCHHHHHHHH
Confidence 468999999999999999987653 22356677776664
No 282
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.43 E-value=58 Score=25.18 Aligned_cols=32 Identities=6% Similarity=-0.014 Sum_probs=28.4
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 94 (497)
..+..|||..++++..++......+.+.|+..
T Consensus 36 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 36 GLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 37899999999999999999999998888753
No 283
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=34.40 E-value=37 Score=29.92 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.|.+..+||+.+|++..+|.|..++|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999874
No 284
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=34.14 E-value=36 Score=28.21 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=25.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
..+|+.+|++.++++.+|+.+.++.+.+
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 5799999999999999999999999864
No 285
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=34.09 E-value=82 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
++-.+|+.+|++.++|+.+||.+.++.|.+
T Consensus 65 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 65 LPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp SCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 356799999999999999999999999864
No 286
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=34.03 E-value=56 Score=25.38 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHhCcChHHHHHHHHHHHHHh
Q 010925 60 KSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 91 (497)
Q Consensus 60 e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 91 (497)
++-+.|..+||..++++..++.+....|.+.=
T Consensus 28 ~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 28 EGKATTAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp SSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34588999999999999999999988887753
No 287
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=34.02 E-value=29 Score=32.11 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=26.4
Q ss_pred cCCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.|.++ |..++|+.+|||..|||..++.|..
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~ 57 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLREVLQRLAR 57 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36678 7999999999999999999999853
No 288
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=33.98 E-value=32 Score=31.13 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+-+.+ ..|+ ..|+++||+.+||+..||-..|..
T Consensus 48 ~Il~aA~~lf~-e~G~~~~t~~~IA~~aGvs~~tlY~~F~s 87 (236)
T 3q0w_A 48 AILATAENLLE-DRPLADISVDDLAKGAGISRPTFYFYFPS 87 (236)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCcHHHHHHHCCC
Confidence 45555555544 3687 699999999999999999877653
No 289
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=33.94 E-value=43 Score=29.59 Aligned_cols=39 Identities=23% Similarity=0.113 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+-+. .|+..|+++||+.+||+..||-..+..
T Consensus 16 ~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tiY~~F~s 54 (224)
T 1t33_A 16 QLIAAALAQFGE-YGLHATTRDIAALAGQNIAAITYYFGS 54 (224)
T ss_dssp HHHHHHHHHHHH-HGGGSCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHhcCC
Confidence 455555544443 465599999999999999999888754
No 290
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=33.86 E-value=27 Score=28.17 Aligned_cols=24 Identities=4% Similarity=0.163 Sum_probs=21.1
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
.+|+.||+.+||+++||.+.-..+
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhH
Confidence 579999999999999999876654
No 291
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=33.85 E-value=20 Score=27.10 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=21.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
...|+.++|+.+||+..||.+.-+
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 578999999999999999988644
No 292
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=33.83 E-value=41 Score=28.61 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=25.3
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+|+.+|++.++++.+||.+.++.|.+
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999864
No 293
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=33.81 E-value=47 Score=28.82 Aligned_cols=27 Identities=0% Similarity=0.046 Sum_probs=25.2
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+|+.+|++.++++.+||.+.++.+.+
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999864
No 294
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=33.78 E-value=25 Score=25.96 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=28.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
...|+.++|+.+||+..||.+..+- ....+++.+..++
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia 54 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALS 54 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 3579999999999999999886542 2345666666654
No 295
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=33.76 E-value=36 Score=28.60 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=25.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999999864
No 296
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=33.74 E-value=33 Score=31.84 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=24.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.+|||..+|+|+.||+.+++.+.
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 568999999999999999999988764
No 297
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=33.70 E-value=50 Score=28.70 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 146 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 146 P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-.-|..||+=+.+ ..|+. .|+.+||+.+||+..||-..|..
T Consensus 19 r~~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (207)
T 2rae_A 19 QDRISTVGIELFT-EQGFDATSVDEVAEASGIARRTLFRYFPS 60 (207)
T ss_dssp HHHHHHHHHHHHH-HHCTTTSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-HcCcccCCHHHHHHHhCCCcchHhhhCCC
Confidence 3445555555444 36875 99999999999999999877654
No 298
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=33.65 E-value=28 Score=32.76 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.9
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.++ |..++|+..|||..|||+.|..|..
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 55 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQ 55 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5567 8999999999999999999999864
No 299
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=33.42 E-value=51 Score=23.90 Aligned_cols=21 Identities=5% Similarity=0.197 Sum_probs=19.8
Q ss_pred CHhhHHHHhccCHHHHHHHHH
Q 010925 166 SKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 166 t~~eIa~v~~Vse~TIrkr~k 186 (497)
|+.++|+.+||+.+||.+..+
T Consensus 15 s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 999999999999999999884
No 300
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=33.38 E-value=42 Score=29.17 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ -.|+. .|+++||+.+||+..||-..|..
T Consensus 18 ~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (220)
T 3lhq_A 18 HILDVALRLFS-QQGVSATSLAEIANAAGVTRGAIYWHFKN 57 (220)
T ss_dssp HHHHHHHHHHH-HHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCCceeehhhcCC
Confidence 45555554444 35875 99999999999999999877654
No 301
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=33.37 E-value=22 Score=31.05 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=31.9
Q ss_pred ChhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+-.-|..||+=+-+. .|+. .|+++||+.+||+..|+-..|..
T Consensus 14 ~r~~Il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 56 (195)
T 2iu5_A 14 TQKIIAKAFKDLMQS-NAYHQISVSDIMQTAKIRRQTFYNYFQN 56 (195)
T ss_dssp HHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCGGGGGGTCSS
T ss_pred HHHHHHHHHHHHHHh-CCCCeeCHHHHHHHhCCCHHHHHHHcCC
Confidence 445666666665554 6875 99999999999999999766543
No 302
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=33.36 E-value=34 Score=28.07 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHh-ccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIV-HICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~-~Vse~TIrkr~kE~~~ 190 (497)
-..++.+|++.+ +|+..|+.++++.|.+
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 368999999999 9999999999999954
No 303
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=33.35 E-value=39 Score=29.55 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+-+.+ -.|+ .+|+++||+.+||+..|+-..+..
T Consensus 15 ~~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~ 55 (189)
T 3vp5_A 15 NRVYDACLNEFQ-THSFHEAKIMHIVKALDIPRGSFYQYFED 55 (189)
T ss_dssp HHHHHHHHHHHH-HSCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-HCCcccccHHHHHHHhCCChHHHHHHCCC
Confidence 456666665554 3687 599999999999999999876644
No 304
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=33.27 E-value=44 Score=29.09 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ -.|+ ..|+++||+.+||+..||-+.+..
T Consensus 22 ~Il~aa~~l~~-~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 22 AILSAALDTFS-QFGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHH-HcCcchhhHHHHHHHHCCChhHHHHhCCC
Confidence 45555554443 3586 589999999999999999887754
No 305
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=33.25 E-value=33 Score=29.25 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+... +|+. .|+++||+.+||+..|+-+.|..
T Consensus 12 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (194)
T 2g7s_A 12 DILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFPS 51 (194)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcCC
Confidence 455555544443 6874 99999999999999999877654
No 306
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=33.21 E-value=59 Score=28.57 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.|.+..+||+.+|++..++.|..++|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 37899999999999999999999999885
No 307
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=33.16 E-value=56 Score=28.13 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+-+ -.|+. .|+.+||+.+||+..||-..+..
T Consensus 8 Il~aA~~lf~-~~G~~~~s~~~IA~~agvsk~t~Y~~F~s 46 (190)
T 3vpr_A 8 ILEEAAKLFT-EKGYEATSVQDLAQALGLSKAALYHHFGS 46 (190)
T ss_dssp HHHHHHHHHH-HHCSTTCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4444443333 35875 89999999999999999877743
No 308
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=33.08 E-value=27 Score=25.56 Aligned_cols=38 Identities=3% Similarity=-0.004 Sum_probs=29.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
...|+.++|+.+||+..||.+..+ .....+++.+..++
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~-----g~~~~~~~~l~~l~ 62 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVER-----GQRNVSLVNILKLA 62 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT-----TCSCCBHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC-----CCCCCCHHHHHHHH
Confidence 468999999999999999987543 22456777777664
No 309
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=33.05 E-value=26 Score=30.21 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+.. ...|+.+||+.+||+..||-..|..
T Consensus 18 ~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (190)
T 2v57_A 18 AILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYPE 55 (190)
T ss_dssp HHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4555555444433 7799999999999999999877654
No 310
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=32.92 E-value=28 Score=25.77 Aligned_cols=39 Identities=5% Similarity=0.035 Sum_probs=29.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia~ 60 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN-----KSQPSLDMLVKVAE 60 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4689999999999999999876542 23467777777753
No 311
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=32.79 E-value=26 Score=26.75 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=30.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
..+|+.++|..+||+..||.+..+- .....+++.+..+++
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G----~~~~p~~~~l~~ia~ 61 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN----LQTNPSIQFLEKVSA 61 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT----SCCCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 4589999999999999999876543 134567777777654
No 312
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=32.73 E-value=99 Score=25.69 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=25.2
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+|+.+|++.++++.+||.+.++.+.+
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 799999999999999999999999864
No 313
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=32.72 E-value=42 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.9
Q ss_pred hcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 160 THGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 160 ~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
.+|+. .|+.+||+.+|||..||-..+.
T Consensus 17 ~~Gy~~~s~~~Ia~~agvskgtlY~~F~ 44 (179)
T 2eh3_A 17 EKGYQGTSVEEIVKRANLSKGAFYFHFK 44 (179)
T ss_dssp HHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HcCCccCCHHHHHHHhCCCcHHHHHHcC
Confidence 36875 8999999999999999976654
No 314
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=32.71 E-value=31 Score=29.69 Aligned_cols=32 Identities=9% Similarity=-0.024 Sum_probs=25.6
Q ss_pred HhcCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 159 LTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 159 r~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
++.....|.++|++.+|||..||.+--+.+..
T Consensus 70 klL~~G~syreIA~~~g~S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 70 KMIKQGYTYATIEQESGASTATISRVKRSLQW 101 (119)
T ss_dssp HHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHS
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 33334499999999999999999987777754
No 315
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=32.70 E-value=42 Score=29.46 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 185 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~ 185 (497)
|..||+=+-+ ..|+. .|+.+||+.+|||..||-..+
T Consensus 17 Il~aA~~lf~-~~Gy~~ts~~~IA~~agvs~gtlY~yF 53 (205)
T 1rkt_A 17 ILEAAKTVFK-RKGFELTTMKDVVEESGFSRGGVYLYF 53 (205)
T ss_dssp HHHHHHHHHH-HHCSTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHH-HcCcccCCHHHHHHHHCCCcchhhhhC
Confidence 4444443333 35875 999999999999999996554
No 316
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=32.66 E-value=49 Score=26.20 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHHHh
Q 010925 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL 91 (497)
Q Consensus 61 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 91 (497)
|.+.+..+||..++++..++.+....|.+.=
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3579999999999999999999988887743
No 317
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=32.64 E-value=30 Score=26.28 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=20.8
Q ss_pred CHhhHHHHhccCHHHHHHHHHHH
Q 010925 166 SKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 166 t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
|+.++|+.+||+..||.+..+--
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHCC
Confidence 99999999999999999887653
No 318
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=32.57 E-value=42 Score=29.28 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ ..|+. +|+++||+.+||+..||-..|..
T Consensus 35 ~Il~aa~~l~~-~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 74 (218)
T 3dcf_A 35 QIIKVATELFR-EKGYYATSLDDIADRIGFTKPAIYYYFKS 74 (218)
T ss_dssp HHHHHHHHHHH-HTCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 44455554443 36875 99999999999999999877654
No 319
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=32.49 E-value=26 Score=28.03 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=31.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 208 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~dl 208 (497)
...|+.++|+.+||+..||.+..+- . .++++...++++-|
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G--~----~~s~~~l~kIa~~L 75 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN--E----NVSLTVLLAICEYL 75 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT--C----CCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC--C----CcCHHHHHHHHHHH
Confidence 4689999999999999999987653 1 25788877776433
No 320
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=32.49 E-value=35 Score=28.20 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=25.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999999864
No 321
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=32.47 E-value=30 Score=32.83 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=26.5
Q ss_pred cCCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.|.++ |..++|+..|||..|||+.|..|..
T Consensus 32 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 62 (248)
T 3f8m_A 32 IGDPFPAEREIAEQFEVARETVRQALRELLI 62 (248)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45677 8999999999999999999999854
No 322
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=32.34 E-value=63 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=22.3
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999864
No 323
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=32.23 E-value=48 Score=26.46 Aligned_cols=31 Identities=6% Similarity=-0.021 Sum_probs=28.3
Q ss_pred CCHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010925 64 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94 (497)
Q Consensus 64 rtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 94 (497)
.+..+||..++++..++......+.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 6889999999999999999999999999864
No 324
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=32.22 E-value=47 Score=28.28 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=26.6
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 447999999999999999999999998653
No 325
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=32.07 E-value=31 Score=32.59 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.++ |..++|+..|||..|||+.|..|..
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 60 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLVN 60 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 7999999999999999999999854
No 326
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.06 E-value=39 Score=30.57 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=23.6
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
....|.++||..+|||+.||++++...
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra 227 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKA 227 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 356899999999999999999888654
No 327
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=32.03 E-value=52 Score=27.32 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCC--CCCCChH---HHHHHHHHHHHHhcCCCCCHHHHHHHhC--cChHHH
Q 010925 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNF--TKGRRTE---QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYEL 80 (497)
Q Consensus 8 I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~--~rGR~~~---~VaAACLYiACR~e~~prtL~DIa~v~~--vsv~~L 80 (497)
+..+|..||++ ..++..-..-| ...+. ..||... ......+-+ ..+-..+..+|+..++ ++..+|
T Consensus 25 ~~~ia~~lgis--~~Tv~r~~~~~---~~~g~~~~~gr~~~l~~~~~~~i~~~---~~~~~~s~~~i~~~lg~~~s~~tV 96 (141)
T 1u78_A 25 LHEMSRKISRS--RHCIRVYLKDP---VSYGTSKRAPRRKALSVRDERNVIRA---ASNSCKTARDIRNELQLSASKRTI 96 (141)
T ss_dssp HHHHHHHHTCC--HHHHHHHHHSG---GGTTCCCCCCCCCSSCHHHHHHHHHH---HHHCCCCHHHHHHHTTCCSCHHHH
T ss_pred HHHHHHHHCcC--HHHHHHHHHcc---cccCCcCCCCCCCcCCHHHHHHHHHH---HhCCCCCHHHHHHHHCCCccHHHH
Confidence 56889999999 66665433333 33332 2354321 111111111 2223478999999988 677777
Q ss_pred HHHHH
Q 010925 81 GAVYL 85 (497)
Q Consensus 81 gr~yk 85 (497)
.+..+
T Consensus 97 ~r~l~ 101 (141)
T 1u78_A 97 LNVIK 101 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 328
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=32.01 E-value=42 Score=29.64 Aligned_cols=29 Identities=7% Similarity=-0.122 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999875
No 329
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=31.97 E-value=29 Score=27.64 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.1
Q ss_pred CHhhHHHHhccCHHHHHHHHHHH
Q 010925 166 SKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 166 t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
.+.+.|+.+||+..|+.++++.+
T Consensus 56 N~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 56 NVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 45678999999999999999875
No 330
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=31.97 E-value=44 Score=26.38 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=25.5
Q ss_pred CCCCCHhhH----HHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDI----VKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eI----a~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+++.+| ++.++++.+||.+.++.|.+
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 346899999 89999999999999999864
No 331
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.82 E-value=60 Score=28.51 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+-+ ..|+ ..|+++||+.+||+..||-..+..
T Consensus 11 ~~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~~tiY~~F~s 51 (202)
T 2d6y_A 11 ARIFEAAVAEFA-RHGIAGARIDRIAAEARANKQLIYAYYGN 51 (202)
T ss_dssp HHHHHHHHHHHH-HHTTTSCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHH-HcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 344555554444 3687 599999999999999999877754
No 332
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=31.67 E-value=38 Score=28.96 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=31.2
Q ss_pred ChhHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+-.-|..||+-+.+. .|+ ..|+++||+.+|||..||-..+..
T Consensus 11 ~r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (196)
T 3col_A 11 KQVKIQDAVAAIILA-EGPAGVSTTKVAKRVGIAQSNVYLYFKN 53 (196)
T ss_dssp HHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHhCC
Confidence 334566666655554 587 599999999999999999766543
No 333
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=31.57 E-value=34 Score=30.29 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|.-||+=+-+ ..|+. .|+.+||+.+|||..||-..++
T Consensus 12 ~Il~aA~~lf~-~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~ 50 (206)
T 1vi0_A 12 QIIDAAVEVIA-ENGYHQSQVSKIAKQAGVADGTIYLYFK 50 (206)
T ss_dssp HHHHHHHHHHH-HHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HhCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 34445544433 36875 9999999999999999977664
No 334
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=31.54 E-value=57 Score=27.29 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=31.2
Q ss_pred HHHHHHhcCCC-CCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 53 LYLACRQKSKP-FLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 53 LYiACR~e~~p-rtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
||.+-..++-| .|..|||+.++++..++.+....|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44444556667 899999999999999999998888874
No 335
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=31.51 E-value=37 Score=25.63 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.2
Q ss_pred CCHHHHHHHhCcChHHHHHHH
Q 010925 64 FLLIDFSNYLNINVYELGAVY 84 (497)
Q Consensus 64 rtL~DIa~v~~vsv~~Lgr~y 84 (497)
.|+.|||..+||+..++.+++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 378999999999999998754
No 336
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=31.49 E-value=8.8 Score=32.81 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=24.6
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.++ |.+++|..+|||..|||+.|..|..
T Consensus 32 G~~lPs~~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3ic7_A 32 EGRIPSVREYASIVEVNANTVMRSYEYLQS 61 (126)
T ss_dssp TSEECCTTTTTTCC-CCSGGGHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556 8999999999999999999999864
No 337
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=31.43 E-value=44 Score=28.78 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+-+.+ -.|+. .|+.+||+.+|||..||-..+..
T Consensus 22 Il~aa~~l~~-~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 60 (206)
T 3kz9_A 22 LMEIALEVFA-RRGIGRGGHADIAEIAQVSVATVFNYFPT 60 (206)
T ss_dssp HHHHHHHHHH-HSCCSSCCHHHHHHHHTSCHHHHHHHCCS
T ss_pred HHHHHHHHHH-hcCcccccHHHHHHHhCCCHHHHHHHcCC
Confidence 5555555444 46876 99999999999999999776644
No 338
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=31.40 E-value=44 Score=29.02 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ ..|+. .|+++||+.+||+..||-..|..
T Consensus 8 ~Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (185)
T 2yve_A 8 MILRTAIDYIG-EYSLETLSYDSLAEATGLSKSGLIYHFPS 47 (185)
T ss_dssp HHHHHHHHHHH-HSCSTTCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcChhhccHHHHHHHhCCChHHHHHhCcC
Confidence 45555554444 46874 99999999999999999887754
No 339
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=31.37 E-value=50 Score=26.93 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=28.4
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 94 (497)
..+..|||+.+++++.++......+.+.|++.
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 35789999999999999999999999999864
No 340
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=31.36 E-value=38 Score=30.60 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ ..|+ ..|+++||+.+||+..||-..|..
T Consensus 17 ~Il~AA~~l~~-~~G~~~~tv~~IA~~agvs~~t~Y~~F~s 56 (231)
T 2qib_A 17 QLIGVALDLFS-RRSPDEVSIDEIASAAGISRPLVYHYFPG 56 (231)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCchhcCHHHHHHHhCCCHHHHHHHCCC
Confidence 45555554444 3687 599999999999999999877654
No 341
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=31.23 E-value=37 Score=28.20 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=25.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 3699999999999999999999999864
No 342
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=31.22 E-value=37 Score=29.04 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=26.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34789999999999999999999999864
No 343
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=31.20 E-value=45 Score=29.15 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+-+-+ -+|+. .|+.+||+.+|||..||-..|..
T Consensus 17 Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 55 (197)
T 2hyt_A 17 LLATARKVFS-ERGYADTSMDDLTAQASLTRGALYHHFGD 55 (197)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTCCTTHHHHHHSS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4444443333 35875 99999999999999999877743
No 344
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=31.17 E-value=29 Score=26.36 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=29.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g-----~~~~~~~~l~~l~~ 64 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA-----ERRLDVIEFMDFCR 64 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999877542 23567777777653
No 345
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=31.12 E-value=10 Score=34.48 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=0.0
Q ss_pred ccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 138 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 138 ~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+...||.|.-. ...+-.+-.+..-..|..+||+.+||+.+|+.+.+++-..
T Consensus 133 ~G~~~Gr~~~~~-~~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~ 184 (193)
T 3uj3_X 133 KGRIGGRPPKLT-KAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp -----------------------------------------------------
T ss_pred hcccCCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHhhh
Confidence 345678877422 1122122233334478999999999999999999887653
No 346
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=31.09 E-value=46 Score=27.00 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=25.9
Q ss_pred CCCCCHhhHHHHh-ccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIV-HICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~-~Vse~TIrkr~kE~~~t 191 (497)
.-..++.+|++.+ |++..||.++++.+.+.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 66 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGK 66 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHC
Confidence 3468999999999 59999999999999643
No 347
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=31.06 E-value=37 Score=29.14 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
-..++.++++.+||+.+||++.++.|..-
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999998643
No 348
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=30.97 E-value=40 Score=29.94 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+=+-+ -.|+. .|+.+||+.+|||..||-+.|.
T Consensus 26 ~Il~AA~~lf~-e~G~~~~s~~~IA~~AGVsk~tlY~~F~ 64 (207)
T 3bjb_A 26 RMLEAAIELAT-EKELARVQMHEVAKRAGVAIGTLYRYFP 64 (207)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 34444544443 36875 8999999999999999977664
No 349
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=30.91 E-value=61 Score=26.96 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+|+.+|++.++++.+||.+.++.+.+
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 789999999999999999999999864
No 350
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=30.89 E-value=33 Score=28.63 Aligned_cols=27 Identities=7% Similarity=0.162 Sum_probs=24.2
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
..|..+||+.+|||++||.+-.+.+.-
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kklG~ 65 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSLGL 65 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 479999999999999999999988753
No 351
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=30.84 E-value=29 Score=26.29 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=29.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|..+||+..||.+..+- ....+++.+..+++
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia~ 61 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN-----SRNLTIKSLELIMK 61 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-----CCCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 5689999999999999999876432 23567777766643
No 352
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=30.78 E-value=43 Score=29.97 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcc
Q 010925 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 93 (497)
Q Consensus 61 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 93 (497)
..|.+..+||+.+|++..++.|..++|.+.=-|
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 208 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEGII 208 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcE
Confidence 468899999999999999999999999886333
No 353
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=30.75 E-value=52 Score=28.13 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
+..-|..||+=+.+. +|+ ..|+++||+.+|||..||-+.+.
T Consensus 11 ~r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 52 (197)
T 3rd3_A 11 TRQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYFK 52 (197)
T ss_dssp HHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHcC
Confidence 344555555555443 587 59999999999999999976553
No 354
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=30.74 E-value=37 Score=25.87 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=30.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|+.+||+..||.+..+-- ...+++.+..+++
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g~-----~~~~~~~l~~i~~ 62 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENNP-----DNTTLTTFFKILQ 62 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCG-----GGCBHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCC-----CCCCHHHHHHHHH
Confidence 46899999999999999999876632 2456777777653
No 355
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=30.67 E-value=40 Score=29.00 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
.-|..||+=+.. -+|+ ..|+++||+.+||+..|+-..+..-
T Consensus 11 ~~Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (206)
T 3dew_A 11 SRLMEVATELFA-QKGFYGVSIRELAQAAGASISMISYHFGGK 52 (206)
T ss_dssp HHHHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHSCHH
T ss_pred HHHHHHHHHHHh-cCCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 345555555544 3687 6999999999999999998777553
No 356
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=30.62 E-value=30 Score=26.14 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
...|+.++|..+||+..||.+..+
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 468999999999999999987654
No 357
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=30.54 E-value=1.3e+02 Score=25.00 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=26.6
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
+.++.+||..++++..++.+....|.+.
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999885
No 358
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=30.43 E-value=53 Score=28.33 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+-++ +|+. .|+++||+.+|||..||-..+..
T Consensus 14 ~~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 54 (203)
T 3b81_A 14 TELANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYFSS 54 (203)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHcCC
Confidence 3455555554443 6874 99999999999999999765543
No 359
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=30.37 E-value=34 Score=26.05 Aligned_cols=22 Identities=5% Similarity=0.102 Sum_probs=20.6
Q ss_pred CHhhHHHHhccCHHHHHHHHHH
Q 010925 166 SKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 166 t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|+.++|+.+||+.+||.+.++.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999998854
No 360
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=30.33 E-value=41 Score=28.76 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCCCCHhhHHHHh-ccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~-~Vse~TIrkr~kE~~~ 190 (497)
.-..++.+|++.+ ||+..||.++++.|.+
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3468999999999 7999999999999954
No 361
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=30.32 E-value=48 Score=28.95 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 146 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 146 P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-.-|..||+=+.+ -.|+. .|+.+||+.+||+..||-+.|..
T Consensus 12 r~~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (216)
T 3s5r_A 12 RELLLDAATTLFA-EQGIAATTMAEIAASVGVNPAMIHYYFKT 53 (216)
T ss_dssp HHHHHHHHHHHHH-HHCTTTCCHHHHHHTTTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-HcCcccCCHHHHHHHHCCCHHHHHHHcCC
Confidence 3445555555444 35875 99999999999999999877644
No 362
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=30.29 E-value=60 Score=27.81 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=23.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+||.+.++.+..
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4589999999999999999999999854
No 363
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=30.26 E-value=40 Score=28.71 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|.-||+=+-+ -.|+. .|+++||+.+|||..||-..+..
T Consensus 13 ~~Il~aa~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 53 (191)
T 3on4_A 13 ERILAVAEALIQ-KDGYNAFSFKDIATAINIKTASIHYHFPS 53 (191)
T ss_dssp HHHHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-HhCcccCCHHHHHHHhCCCcchhhhcCCC
Confidence 345555554444 36875 99999999999999999877654
No 364
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=30.25 E-value=58 Score=23.63 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=25.6
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHHhc
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLY 92 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~ 92 (497)
..+..+||..++++..++.+......+.|.
T Consensus 31 g~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 31 GLSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 368899999999999999888877777765
No 365
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=30.23 E-value=53 Score=28.24 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ ..|+ ..|+++||+.+||+..||-..+..
T Consensus 12 ~Il~aA~~l~~-~~G~~~~t~~~IA~~Agvs~~tly~~F~s 51 (194)
T 3dpj_A 12 QIVAAADELFY-RQGFAQTSFVDISAAVGISRGNFYYHFKT 51 (194)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHHCCChHHHHHHcCC
Confidence 34445554444 3587 599999999999999999776643
No 366
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=30.08 E-value=36 Score=26.60 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
...|+.++|+.+||+..||.+..+- ....+.+.+..++
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g-----~~~~~~~~~~~i~ 57 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG-----KAALTPEMAIKLS 57 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT-----SSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 4589999999999999999987653 2345666666553
No 367
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=30.06 E-value=15 Score=33.05 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.+++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 162 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 191 (213)
T 1o5l_A 162 TLPVTLEELSRLFGCARPALSRVFQELERE 191 (213)
T ss_dssp ------------------------------
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999998654
No 368
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=29.97 E-value=34 Score=33.00 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=25.9
Q ss_pred CCCC-CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~-t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|.++ |..++|+..|||..|||+.|..|..
T Consensus 50 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 79 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVALEARKVLMA 79 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5567 8999999999999999999999864
No 369
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=29.92 E-value=40 Score=29.08 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+. +|+. .|+++||+.+|||..||-..+..
T Consensus 21 ~Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 21 SIVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcCC
Confidence 355555544443 5875 99999999999999999777654
No 370
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=29.76 E-value=44 Score=28.70 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+-+. +|+..|+++||+.+||+..||-..+..
T Consensus 12 ~~Il~aA~~lf~~-~G~~~t~~~IA~~aGvs~~tly~~F~s 51 (190)
T 3jsj_A 12 ERLLEAAAALTYR-DGVGIGVEALCKAAGVSKRSMYQLFES 51 (190)
T ss_dssp HHHHHHHHHHHHH-HCTTCCHHHHHHHHTCCHHHHHHHCSC
T ss_pred HHHHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHHcCC
Confidence 3455555544443 476699999999999999999877643
No 371
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=29.74 E-value=52 Score=27.84 Aligned_cols=29 Identities=3% Similarity=0.113 Sum_probs=26.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34699999999999999999999999864
No 372
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=29.70 E-value=51 Score=25.51 Aligned_cols=41 Identities=2% Similarity=-0.039 Sum_probs=31.4
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
....+|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 23 ~~~glsq~~lA~~~gis~~~is~~e~g-----~~~p~~~~l~~la~ 63 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADYESG-----RAIPNNQVLGKIER 63 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHT-----CSCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 346789999999999999999876653 23467777777754
No 373
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=29.64 E-value=41 Score=29.36 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+.+ -+|+ ..|+.+||+.+||+..||-..|..
T Consensus 31 Il~aA~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 69 (217)
T 3mvp_A 31 ILQVAKDLFS-DKTYFNVTTNEIAKKADVSVGTLYAYFAS 69 (217)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH-HcCccccCHHHHHHHhCCChhHHHHHcCC
Confidence 5555555544 3687 599999999999999999877754
No 374
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=29.60 E-value=51 Score=29.12 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+=+-+ -+|+. .|+.+||+.+|||..||-..++
T Consensus 15 ~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2wui_A 15 GILDAAERVFL-EKGVGTTAMADLADAAGVSRGAVYGHYK 53 (210)
T ss_dssp HHHHHHHHHHH-HSCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HcCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 44444544433 47875 8999999999999999977664
No 375
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=29.57 E-value=53 Score=28.71 Aligned_cols=41 Identities=22% Similarity=0.092 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 146 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 146 P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-.-|..||+=+-+ -+|+. .|+++||+.+|||..||-..+..
T Consensus 13 r~~Il~aA~~lf~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 54 (216)
T 3f0c_A 13 LELIINAAQKRFA-HYGLCKTTMNEIASDVGMGKASLYYYFPD 54 (216)
T ss_dssp HHHHHHHHHHHHH-HHCSSSCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-HcCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 3445555554443 36874 99999999999999999877644
No 376
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=29.57 E-value=11 Score=36.45 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
+.|.+|||+.+|||.+|+++.|+.-
T Consensus 5 ~~ti~diA~~agVS~~TVSrvln~~ 29 (332)
T 2o20_A 5 TTTIYDVARVAGVSMATVSRVVNGN 29 (332)
T ss_dssp -------------------------
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 5799999999999999999999864
No 377
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=29.50 E-value=41 Score=29.64 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+.+ ..|+ ..|+.+||+.+||+..||-..|..
T Consensus 28 Il~aA~~lf~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 66 (214)
T 2zb9_A 28 VLHAVGELLL-TEGTAQLTFERVARVSGVSKTTLYKWWPS 66 (214)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 4444443333 3687 599999999999999999777643
No 378
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=29.50 E-value=34 Score=30.01 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHH
Q 010925 146 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 185 (497)
Q Consensus 146 P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~ 185 (497)
-.-|.-||+-+-+ ..|+. .|+++||+.+||+..||-..|
T Consensus 16 r~~Il~aA~~lf~-~~G~~~~s~~~Ia~~agvs~~t~Y~yF 55 (203)
T 3ccy_A 16 RDTIIERAAAMFA-RQGYSETSIGDIARACECSKSRLYHYF 55 (203)
T ss_dssp HHHHHHHHHHHHH-HTCTTTSCHHHHHHHTTCCGGGGTTTC
T ss_pred HHHHHHHHHHHHH-HcCcccCCHHHHHHHhCCCcCeeeeee
Confidence 3456666655544 36875 999999999999999996544
No 379
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=29.49 E-value=47 Score=29.09 Aligned_cols=38 Identities=13% Similarity=-0.045 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+.+ -+|+. .|+.+||+.+||+..||-+.+..
T Consensus 22 Il~aA~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 60 (218)
T 3gzi_A 22 LILAARNLFI-ERPYAQVSIREIASLAGTDPGLIRYYFGS 60 (218)
T ss_dssp HHHHHHHHHH-TSCCSCCCHHHHHHHHTSCTHHHHHHHSS
T ss_pred HHHHHHHHHH-HCCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4444444433 46875 99999999999999999887754
No 380
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=29.49 E-value=34 Score=31.78 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=24.2
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.+|||..+|||+.||+.+++.+.
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567999999999999999999988764
No 381
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=29.48 E-value=9.2 Score=33.84 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=29.2
Q ss_pred HHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 158 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 158 ar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
....|.++|..++|+.+|||..|+|.+++.|...
T Consensus 21 ~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~ 54 (163)
T 2gqq_A 21 ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQ 54 (163)
T ss_dssp HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3345788899999999999999999999998643
No 382
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=29.46 E-value=32 Score=31.55 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.3
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
.|.+++..++|+.+|||..|||..++.|.
T Consensus 32 pG~~L~e~~La~~lgVSRtpVREAL~~L~ 60 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGISFTPVRDALLQLA 60 (218)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCEeCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36778999999999999999999999885
No 383
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=29.29 E-value=32 Score=25.43 Aligned_cols=23 Identities=9% Similarity=0.351 Sum_probs=20.6
Q ss_pred CHhhHHHHhccCHHHHHHHHHHH
Q 010925 166 SKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 166 t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
++...|+.+||+..|+.++++.+
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 56788999999999999999876
No 384
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=29.24 E-value=45 Score=28.17 Aligned_cols=29 Identities=24% Similarity=0.099 Sum_probs=26.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 34699999999999999999999999864
No 385
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=29.17 E-value=53 Score=29.73 Aligned_cols=37 Identities=19% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
|..||+=+-+ .+|+. .|+++||+.+||+..||-..+.
T Consensus 12 Il~AA~~lF~-e~G~~~ts~~~IA~~AGvs~~tlY~hF~ 49 (235)
T 2fbq_A 12 ILDAAEQLFA-EKGFAETSLRLITSKAGVNLAAVNYHFG 49 (235)
T ss_dssp HHHHHHHHHH-HHCSTTCCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHH-HcCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 4444443333 35875 9999999999999999977664
No 386
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.11 E-value=57 Score=25.62 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHHhc
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLY 92 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~ 92 (497)
..+..+||..+++++.++........+.|.
T Consensus 53 g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 53 GWSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 368999999999999888777666555553
No 387
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=28.97 E-value=35 Score=28.25 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3699999999999999999999999864
No 388
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=28.92 E-value=48 Score=28.79 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|.-||+=+-+. +|+..|+.+||+.+||+..||-..|..
T Consensus 20 ~Il~aA~~lf~~-~G~~~s~~~Ia~~agvs~~t~Y~~F~s 58 (199)
T 2rek_A 20 RIIEAAAAEVAR-HGADASLEEIARRAGVGSATLHRHFPS 58 (199)
T ss_dssp HHHHHHHHHHHH-HGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHh-cCCCCCHHHHHHHhCCchHHHHHHCCC
Confidence 344444433332 466889999999999999999776643
No 389
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=28.89 E-value=33 Score=26.67 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=29.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|..+||+..||.+.-+ .....+++.+..+.+
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~-----G~~~p~~~~l~~ia~ 64 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVET-----RERRLDVIEFAKWMA 64 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHT-----TSSCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 568999999999999999987532 233567777777653
No 390
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=28.83 E-value=72 Score=28.03 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
|.-||+=+-+ .+|+. .|+.+||+.+|||..||-..+.
T Consensus 17 Il~aA~~lf~-~~G~~~ts~~~IA~~aGvsk~tlY~~F~ 54 (211)
T 3bhq_A 17 IIQAATAAFI-SKGYDGTSMEEIATKAGASKQTVYKHFT 54 (211)
T ss_dssp HHHHHHHHHH-HHCSTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 3344443333 36876 9999999999999999987764
No 391
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=28.79 E-value=72 Score=27.25 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=30.7
Q ss_pred ChhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+-.-|.-||+=+-+. +|+. .|+++||+.+||+..|+-..+..
T Consensus 12 ~r~~il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 54 (196)
T 3he0_A 12 KRDQILAAAEQLIAE-SGFQGLSMQKLANEAGVAAGTIYRYFSD 54 (196)
T ss_dssp CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchHHHhcCC
Confidence 344566666655543 4875 99999999999999999765543
No 392
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=28.59 E-value=55 Score=29.43 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+. .|+. .|+++||+.+||+..||-..|..
T Consensus 47 ~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~s 86 (229)
T 3bni_A 47 RILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFGN 86 (229)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcCC
Confidence 455555555443 5875 99999999999999999877654
No 393
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.50 E-value=50 Score=27.41 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3789999999999999999999999864
No 394
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=28.45 E-value=60 Score=27.76 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+=+.+ -+|+. .|+++||+.+|||..||-..++
T Consensus 11 ~Il~aa~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 49 (199)
T 3qbm_A 11 RVVAQAAALFN-VSGYAGTAISDIMAATGLEKGGIYRHFE 49 (199)
T ss_dssp HHHHHHHHHHH-HHCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHH-HhCcCcCCHHHHHHHhCCCccHHHHhCC
Confidence 34455554444 36875 8999999999999999976654
No 395
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=28.32 E-value=45 Score=31.58 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCCHHHHHH
Q 010925 48 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 127 (497)
Q Consensus 48 VaAACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~idP~~~I~Rf~~~L~~~~~~~V~~~ 127 (497)
+..++-||--.. ..+.++.++|..+++|...|.+.|+.. .| ..|..||.+. + ...
T Consensus 5 ~~~~~~~i~~~~-~~~~~~~~la~~~~~s~~~l~r~f~~~---~g----------~s~~~~~~~~--R---------l~~ 59 (292)
T 1d5y_A 5 IRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDV---TG----------HAIGAYIRAR--R---------LSK 59 (292)
T ss_dssp HHHHHHHHHTTS-SSSCCCHHHHTTTSSCHHHHHHHHHHH---HS----------SCHHHHHHHH--H---------HHH
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHH--H---------HHH
Confidence 444555664443 568999999999999999999886654 33 3466666554 1 112
Q ss_pred HHHHHHHhccccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhcc-CHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 010925 128 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMAR 204 (497)
Q Consensus 128 A~~Lv~~~~~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~V-se~TIrkr~kE~~~t~~~~Lt~~ef~~~ 204 (497)
|.+++. .-..++.+||..+|- +.....+.++... .+|+.+|++.
T Consensus 60 a~~~L~----------------------------~~~~~i~~ia~~~Gf~~~~~f~r~fk~~~-----g~~P~~~r~~ 104 (292)
T 1d5y_A 60 SAVALR----------------------------LTARPILDIALQYRFDSQQTFTRAFKKQF-----AQTPALYRRS 104 (292)
T ss_dssp HHHHHH----------------------------HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHC
T ss_pred HHHHHh----------------------------cCCCCHHHHHHHcCCCCHHHHHHHHHHHH-----CcChHHHHHh
Confidence 222211 124567788888885 4567778887764 4778888876
No 396
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=28.30 E-value=58 Score=28.47 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+=+-+. .|+ ..|+++||+.+||+..||-+.+.
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~ 53 (212)
T 2ras_A 15 RLVDVAQAIVEE-RGGAGLTLSELAARAGISQANLSRYFE 53 (212)
T ss_dssp HHHHHHHHHHHH-HTSSCCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHH-hCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 455555544443 576 49999999999999999966553
No 397
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=28.23 E-value=76 Score=31.73 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHHHHHhCc-ChHHHHHHHHH
Q 010925 8 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI-NVYELGAVYLQ 86 (497)
Q Consensus 8 I~~ia~~L~Lp~~~~i~d~A~~iyk~a~~~~~~rGR~~~~VaAACLYiACR~e~~prtL~DIa~v~~v-sv~~Lgr~yk~ 86 (497)
|..+|..++++ .. +-.++|+......+..=.+..-+.-|+-++. ....++.+||..+|. +...+.+.|++
T Consensus 324 ~~~~a~~~~~s--~~---~l~r~f~~~~g~s~~~~~~~~r~~~a~~~L~----~~~~~i~~ia~~~Gf~~~~~f~~~Fk~ 394 (412)
T 4fe7_A 324 VDQVLDAVGIS--RS---NLEKRFKEEVGETIHAMIHAEKLEKARSLLI----STTLSINEISQMCGYPSLQYFYSVFKK 394 (412)
T ss_dssp HHHHHHHTTCC--HH---HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCcC--HH---HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 56778888888 33 3345566665544433233333444444442 345789999999997 57777777765
Q ss_pred H
Q 010925 87 L 87 (497)
Q Consensus 87 L 87 (497)
.
T Consensus 395 ~ 395 (412)
T 4fe7_A 395 A 395 (412)
T ss_dssp H
T ss_pred H
Confidence 4
No 398
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=28.18 E-value=30 Score=29.54 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+.+. .|+ ..|+++||+.+||+..||-..+..
T Consensus 9 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 9 EKILHTASRLSQL-QGYHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHHHHHHHH-cCccccCHHHHHHHHCCCchhHHHHccc
Confidence 3455566555554 677 599999999999999999887753
No 399
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=28.12 E-value=81 Score=23.69 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHhCcChHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGA 82 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr 82 (497)
...|..+||..+||+...|.+
T Consensus 24 ~gltq~~lA~~~gvs~~~is~ 44 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAA 44 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHH
Confidence 356899999999999888775
No 400
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=28.05 E-value=1e+02 Score=27.45 Aligned_cols=29 Identities=0% Similarity=0.032 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.|.|..+||+.+|++..++.|..++|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999999885
No 401
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=28.04 E-value=51 Score=29.54 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ ..|+. .|+++||+.+||+..||-..|..
T Consensus 43 ~Il~AA~~lf~-e~G~~~~tv~~IA~~AGvs~~tlY~~F~s 82 (214)
T 2guh_A 43 LIVDAAGRAFA-TRPYREITLKDIAEDAGVSAPLIIKYFGS 82 (214)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHH-HcChhhcCHHHHHHHhCCCHHHHHHHcCC
Confidence 34455544443 36875 99999999999999999887754
No 402
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=27.96 E-value=44 Score=24.24 Aligned_cols=39 Identities=5% Similarity=-0.044 Sum_probs=30.2
Q ss_pred CCCCHhhHHHHhc--cCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVH--ICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~--Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|+.+| |+..||.+..+- ....+++.+..+++
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g-----~~~~~~~~l~~la~ 60 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG-----DRAVTVQRLAELAD 60 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT-----CSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4689999999999 999999876543 23467787777754
No 403
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=27.79 E-value=36 Score=30.28 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCCCCHhhHHHHh-----ccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIV-----HICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~-----~Vse~TIrkr~kE~~~t 191 (497)
.--.||.|+++.+ +||++||++-++++..+
T Consensus 17 ~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL~~v 51 (149)
T 1b4a_A 17 NDIETQDELVDRLREAGFNVTQATVSRDIKEMQLV 51 (149)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTTCE
T ss_pred CCCccHHHHHHHHHHcCCCcCHHHHHHHHHHcCCe
Confidence 3458999999999 99999999999998643
No 404
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=27.70 E-value=29 Score=30.45 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+.+. .|+. .|+++||+.+||+..||-..+..
T Consensus 16 ~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~s 56 (217)
T 3nrg_A 16 SRLIDVLLDEFAQ-NDYDSVSINRITERAGIAKGSFYQYFAD 56 (217)
T ss_dssp HHHHHHHHHHHHH-SCGGGCCHHHHHHHHTCCTTGGGGTCSS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHcCC
Confidence 3455555555443 7876 99999999999999999766543
No 405
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=27.68 E-value=2.2e+02 Score=23.27 Aligned_cols=74 Identities=8% Similarity=0.045 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHhCcChHHHHHH-----------HHHHHHHhccccccccccc--CCccchHHHHHhhhCCCCCHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAV-----------YLQLCQVLYIADESNVLKQ--VDPSIFLHKFTDRLLPGGNKKVCDTA 128 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~-----------yk~L~~~L~i~~~~~~~~~--idP~~~I~Rf~~~L~~~~~~~V~~~A 128 (497)
...|..++|..+||+...|.+. +..|++.|+++....+... .........+...+. .++.+-....
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~l~~~~~-~l~~~~~~~i 102 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKID-NFTDADLVIM 102 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCCCHHHHHHHHHTT-TCCHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCCccccchHHHHHHHHHHH-cCCHHHHHHH
Confidence 3457888888888888777765 3567777776533211111 112233445555554 2566666666
Q ss_pred HHHHHHhc
Q 010925 129 RDILASMK 136 (497)
Q Consensus 129 ~~Lv~~~~ 136 (497)
..+++.+.
T Consensus 103 ~~~i~~l~ 110 (126)
T 3ivp_A 103 ESVADGIV 110 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 406
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=27.68 E-value=90 Score=23.79 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
-+.+..|||+.++++..++.+....|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47899999999999999999999988775
No 407
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=27.66 E-value=47 Score=27.27 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.5
Q ss_pred CHhhHHHHhccCHHHHHHHHHHH
Q 010925 166 SKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 166 t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
.+...|+.+||+..|++++++.+
T Consensus 73 n~~~AA~~LGIsR~TL~rkLkk~ 95 (98)
T 1eto_A 73 NQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 46678999999999999999876
No 408
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=27.54 E-value=34 Score=28.09 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...||.++|..+||+..||.+.= .+..+++-+..+.+
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E-------~G~~~~~~l~~i~~ 84 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAE-------KGKVQLDIMIAILM 84 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH-------TTCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHHH-------CCCCCHHHHHHHHH
Confidence 56899999999999999998642 34567776766643
No 409
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=27.52 E-value=61 Score=28.36 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
|..||+=+-+ -.|+. .|+.+||+.+|||..||-..+.
T Consensus 19 Il~aA~~lf~-~~G~~~~s~~~IA~~agvs~~tlY~~F~ 56 (204)
T 2ibd_A 19 LLDIAATLFA-ERGLRATTVRDIADAAGILSGSLYHHFD 56 (204)
T ss_dssp HHHHHHHHHH-HHCSTTCCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHH-HcCchhcCHHHHHHHhCCCchhHHHhcC
Confidence 4444444333 35875 8999999999999999977664
No 410
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=27.49 E-value=47 Score=28.03 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=25.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+||.+.++.+.+
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999999864
No 411
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=27.46 E-value=13 Score=36.13 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhh
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELH 209 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~dle 209 (497)
+.|.+|||+.+|||.+|+++.|+.-. .-+.-|-+-.+...++|-
T Consensus 4 ~~ti~diA~~agVS~~TVSr~Ln~~~--~vs~~tr~rV~~~~~~lg 47 (339)
T 3h5o_A 4 GVTMHDVAKAAGVSAITVSRVLNQPQ--QVSEQLREKVMQAVDALA 47 (339)
T ss_dssp ----------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC--CCCHHHHHHHHHHHHHhC
Confidence 57999999999999999999997632 223344444444433333
No 412
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=27.44 E-value=49 Score=28.18 Aligned_cols=42 Identities=7% Similarity=0.193 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+-.-|..||+=+.+. .|+. .|+++||+.+||+..||-..+..
T Consensus 9 ~r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (183)
T 1zk8_A 9 TLQKIVETAAEIADA-NGVQEVTLASLAQTLGVRSPSLYNHVKG 51 (183)
T ss_dssp CHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHHHHHHHHHHHHHh-cCccccCHHHHHHHcCCCchHHHHHcCC
Confidence 334566666555443 5775 99999999999999999765543
No 413
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=27.41 E-value=72 Score=24.90 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 61 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
+-+.+..|||..++++..++.+....|.+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567999999999999999999988888764
No 414
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=27.32 E-value=36 Score=26.34 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.9
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|..+||+..||.+..+- ....+++.+..+++
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~ia~ 67 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG-----INALNAYNAALLAK 67 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4689999999999999999876642 23467777777653
No 415
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=27.29 E-value=59 Score=28.32 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+=+-+ -.|+. .|+++||+.+|||..||-..++
T Consensus 14 ~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~gtlY~yF~ 52 (194)
T 2nx4_A 14 SITAAAWRLIA-ARGIEAANMRDIATEAGYTNGALSHYFA 52 (194)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-hcCcccCCHHHHHHHhCCCcchHHHhCc
Confidence 45555554433 35875 8999999999999999976653
No 416
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=27.28 E-value=62 Score=28.21 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
|.-||+=+-+ .+|+. .|+.+||+.+|||..||-..|.
T Consensus 14 Il~aA~~lf~-~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~ 51 (204)
T 3anp_C 14 IFRAAMELFR-NRGFQETTATEIAKAAHVSRGTFFNYYP 51 (204)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHH-HcCcccccHHHHHHHcCCchHHHHHHcC
Confidence 4444443333 35875 8999999999999999976663
No 417
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=27.27 E-value=56 Score=27.50 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+||.+.++.|.+
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999864
No 418
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.20 E-value=18 Score=31.52 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
..|..+||+.+||+..||++.++.+..+
T Consensus 41 G~s~~~IA~~lgis~~TV~rwl~r~~~~ 68 (159)
T 2k27_A 41 GVRPCDISRQLRVSHGCVSKILGRYYET 68 (159)
T ss_dssp TCCHHHHHHHHTCCSHHHHHHHCCSSTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4799999999999999999999887643
No 419
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=27.18 E-value=56 Score=26.35 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=25.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
+-.+++++|+..++++..||.+.++-|.
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3469999999999999999999999884
No 420
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.02 E-value=45 Score=26.23 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=28.3
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHHhccc
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 94 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 94 (497)
..+..+||..++++..++......+.+.|+..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999999999988763
No 421
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=27.00 E-value=70 Score=27.91 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+-+-+ -+|+. .|+.+||+.+|||..||-..+.
T Consensus 11 ~Il~aA~~lf~-~~G~~~ts~~~IA~~aGvs~gtlY~~F~ 49 (197)
T 2gen_A 11 EILQAALACFS-EHGVDATTIEMIRDRSGASIGSLYHHFG 49 (197)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHHCCCHHHHHHHTC
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHHCCChHHHHHHCC
Confidence 45555554443 35874 8999999999999999977664
No 422
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=26.97 E-value=95 Score=28.75 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.|.+..+||+.+|++..+|.|+.++|.+.
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 37899999999999999999999999885
No 423
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=26.87 E-value=44 Score=29.01 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=31.5
Q ss_pred ChhHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+-.-|..||+=+.++ .|+ ..|+++||+.+||+..||-..|..
T Consensus 10 ~r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~s 52 (193)
T 2dg8_A 10 RRERILAATLDLIAE-EGIARVSHRRIAQRAGVPLGSMTYHFTG 52 (193)
T ss_dssp HHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCTHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHH-hChhhccHHHHHHHhCCCchhhheeCCC
Confidence 344566666655553 677 599999999999999999877654
No 424
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=26.85 E-value=51 Score=27.36 Aligned_cols=28 Identities=4% Similarity=0.211 Sum_probs=24.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
...|..++|+.+|||++||-+-.+.+.-
T Consensus 34 ~~~si~elA~~~~vS~aTv~Rf~kkLGf 61 (107)
T 3iwf_A 34 VNMTSQEIANQLETSSTSIIRLSKKVTP 61 (107)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHST
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHHHhCC
Confidence 4579999999999999999999888753
No 425
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=26.79 E-value=39 Score=26.91 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
...|+.++|+.+||+..||.+.-+
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 568999999999999999988643
No 426
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=26.64 E-value=86 Score=28.06 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.|.+..+||+.+|++..++.|+.+.|.+.
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999885
No 427
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=26.63 E-value=57 Score=30.60 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=40.5
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 144 R~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
+.+.-+.-+.-||-.... .++|+.++|+.+|+|..++.+.++++ .+|+.+|....
T Consensus 166 ~~~~~~~~~~~~i~~~~~-~~~sl~~lA~~~~~S~~~l~r~fk~~------G~t~~~~l~~~ 220 (276)
T 3gbg_A 166 DDLDAMEKISCLVKSDIT-RNWRWADICGELRTNRMILKKELESR------GVKFRELINSI 220 (276)
T ss_dssp CTTCHHHHHHHHHHHTTT-SCCCHHHHHHHHTCCHHHHHHHHHTT------TCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhc-CCCCHHHHHHHHCcCHHHHHHHHHHc------CCCHHHHHHHH
Confidence 344455555556655443 48999999999999999999999753 47788887653
No 428
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=26.58 E-value=39 Score=29.01 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 146 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 146 P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-.-|..||+-+-+ -.|+. .|+.+||+.+||+..||-+.|..
T Consensus 16 r~~Il~aA~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 57 (191)
T 4aci_A 16 RQEILEGARRCFA-EHGYEGATVRRLEEATGKSRGAIFHHFGD 57 (191)
T ss_dssp HHHHHHHHHHHHH-HHHHHHCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHH-HhCcccCCHHHHHHHHCCCchHHHHHCCC
Confidence 3445555554443 35765 99999999999999999887754
No 429
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=26.53 E-value=67 Score=28.14 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 185 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~ 185 (497)
-|..||+-+-+ -.|+. .|+++||+.+||+..||-..+
T Consensus 18 ~Il~aA~~lf~-~~G~~~~s~~~IA~~agvsk~tlY~yF 55 (199)
T 3crj_A 18 EIMQATYRALR-EHGYADLTIQRIADEYGKSTAAVHYYY 55 (199)
T ss_dssp HHHHHHHHHHH-HHTTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCChhHHhhhc
Confidence 34555554444 36864 899999999999999997655
No 430
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=26.53 E-value=75 Score=24.87 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=28.2
Q ss_pred hcCCCCCHHHHHHHhCcChHH-HHHHHHHHHHH
Q 010925 59 QKSKPFLLIDFSNYLNINVYE-LGAVYLQLCQV 90 (497)
Q Consensus 59 ~e~~prtL~DIa~v~~vsv~~-Lgr~yk~L~~~ 90 (497)
.++.+.++.|||..++++..+ +.+....|.+.
T Consensus 26 ~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 455579999999999999999 99999999885
No 431
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=26.42 E-value=85 Score=28.49 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=26.1
Q ss_pred CCCHHHHHHHhCcCh-HHHHHHHHHHHHH
Q 010925 63 PFLLIDFSNYLNINV-YELGAVYLQLCQV 90 (497)
Q Consensus 63 prtL~DIa~v~~vsv-~~Lgr~yk~L~~~ 90 (497)
|.|..+||+.+|++. .+|.|..++|.+.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 789999999999999 7999999999875
No 432
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=26.31 E-value=39 Score=31.69 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=26.6
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.|.+++..++|+.+|||..|||..++.|..
T Consensus 48 pG~~L~e~~La~~lgVSRtpVREAL~~L~~ 77 (239)
T 2hs5_A 48 PGARLSEPDICAALDVSRNTVREAFQILIE 77 (239)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCEeCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 366789999999999999999999999853
No 433
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=26.26 E-value=42 Score=31.37 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=24.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
...|.++||..+|||+.||+..++.+..
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMR 216 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999888743
No 434
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.24 E-value=42 Score=31.70 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=24.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
...|.+|||+.+|+++.||+.++.-...
T Consensus 211 ~G~s~~EIA~~L~iS~~TVk~~l~ra~~ 238 (258)
T 3clo_A 211 KGLSSKEIAATLYISVNTVNRHRQNILE 238 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5679999999999999999998877653
No 435
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=26.16 E-value=65 Score=28.67 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 146 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 146 P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-.-|..||+=+.+ -.|+. .|+++||+.+||+..||-..+.
T Consensus 37 r~~Il~aA~~lf~-~~G~~~~t~~~IA~~AGvs~~tlY~~F~ 77 (221)
T 3g7r_A 37 RARLLGTATRIFY-AEGIHSVGIDRITAEAQVTRATLYRHFS 77 (221)
T ss_dssp HHHHHHHHHHHHH-HHCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-HhCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 3445555555444 35875 9999999999999999987664
No 436
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=26.14 E-value=51 Score=28.94 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ ..|+. .|+.+||+.+||+..||-..+..
T Consensus 7 ~Il~aA~~lf~-~~G~~~~s~~~IA~~Agvs~~t~Y~~F~s 46 (212)
T 3rh2_A 7 KIIQASLELFN-EHGERTITTNHIAAHLDISPGNLYYHFRN 46 (212)
T ss_dssp HHHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 34445554443 36876 99999999999999999876644
No 437
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=26.11 E-value=51 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++++.+||.+.++.+..
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999998854
No 438
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=26.09 E-value=59 Score=26.72 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=25.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 3689999999999999999999999864
No 439
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.08 E-value=55 Score=28.75 Aligned_cols=36 Identities=14% Similarity=0.341 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 185 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~ 185 (497)
|..||+=+-+ -.|+. .|+.+||+.+|||..||-..+
T Consensus 17 Il~aA~~lf~-~~G~~~~s~~~IA~~aGvsk~tlY~hF 53 (200)
T 2hyj_A 17 ILGRAAEIAS-EEGLDGITIGRLAEELEMSKSGVHKHF 53 (200)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHTTC
T ss_pred HHHHHHHHHH-HcCcccCCHHHHHHHhCCChHHHHHHc
Confidence 4444443322 36875 999999999999999997655
No 440
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=26.06 E-value=54 Score=29.23 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=26.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+||+.++++.+||.+.++.|..
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998854
No 441
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=26.06 E-value=1.2e+02 Score=24.79 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 51 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 51 ACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.+|++..+..+-|.++.|||+.++++..++.+....|.+.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 3444444433468999999999999999999999999885
No 442
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=26.05 E-value=67 Score=28.80 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
-|..||+=+.+. .|+. .|+++||+.+||+..||-..|.
T Consensus 34 ~Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 72 (230)
T 2iai_A 34 TLLSVAVQVFIE-RGYDGTSMEHLSKAAGISKSSIYHHVT 72 (230)
T ss_dssp CHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHH-cCccccCHHHHHHHHCCChhHHHHhCC
Confidence 355555555443 5875 9999999999999999965553
No 443
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=26.00 E-value=68 Score=27.97 Aligned_cols=39 Identities=31% Similarity=0.285 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
.-|.-||+=+-+ ..|+. .|+.+||+.+|||..||-..++
T Consensus 13 ~~Il~aA~~lf~-~~G~~~~s~~~Ia~~Agvskgt~Y~yF~ 52 (197)
T 2f07_A 13 EKILQAAIEVIS-EKGLDKASISDIVKKAGTAQGTFYLYFS 52 (197)
T ss_dssp HHHHHHHHHHHH-HHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-HhCcccCCHHHHHHHhCCCchHHHHhCC
Confidence 345555554444 36875 8999999999999999976653
No 444
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=31.89 E-value=14 Score=28.77 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=35.3
Q ss_pred HHHHHHHhcCC-CCCHHHHHHHhCcChHHHHHHHHHHHHHhc
Q 010925 52 CLYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLY 92 (497)
Q Consensus 52 CLYiACR~e~~-prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~ 92 (497)
-|..+|++.|. |-++.-||..++=++..+...|.+|.+.+.
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 46788998876 899999999999999999999999988653
No 445
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=25.85 E-value=1.3e+02 Score=26.61 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=30.3
Q ss_pred cccccCCCChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHH
Q 010925 137 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 137 ~~~l~~GR~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~k 186 (497)
..+...||.|..-. --|+ .+..-..|..+||+.+||+.+||.+.++
T Consensus 135 ~~G~~~Gr~~~~~~-~~i~---~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 135 AKGVVFGRKRKIDR-DAVL---NMWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHTCCCSSCCCSCH-HHHH---HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCcCCCCCCCCH-HHHH---HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34556787653211 1222 2222346999999999999999998775
No 446
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=25.83 E-value=52 Score=28.05 Aligned_cols=29 Identities=7% Similarity=0.137 Sum_probs=26.1
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++|+.+|+.+.++.+.+
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999864
No 447
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=25.83 E-value=45 Score=28.04 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=19.8
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 6799999999999999999999998864
No 448
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=25.80 E-value=69 Score=32.22 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=28.1
Q ss_pred hcCCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 160 THGLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 160 ~~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
..+-++|..||++.+|+|.+||.+++++|.+.
T Consensus 26 ~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 26 DQLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34557999999999999999999999999763
No 449
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=25.63 E-value=69 Score=28.05 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
|.-||+=+-+ -.|+. .|+.+||+.+|||..||-..+.
T Consensus 15 Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~~t~Y~~F~ 52 (210)
T 3vib_A 15 LMLAALETFY-RKGIARTSLNEIAQAAGVTRDALYWHFK 52 (210)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHHCcCHHHHHHHCC
Confidence 4444443333 36875 8999999999999999976654
No 450
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.55 E-value=1e+02 Score=26.22 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=25.6
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++|+.+||.+.++.+.+
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999999864
No 451
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=25.54 E-value=32 Score=29.38 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+-+.. -.|+. .|+++||+.+||+..||-+.+..
T Consensus 12 ~Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (195)
T 3pas_A 12 AFLEATVREVA-DHGFSATSVGKIAKAAGLSPATLYIYYED 51 (195)
T ss_dssp HHHHHHHHHHH-HHHHHHCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcChHhcCHHHHHHHhCCCchHHHHHcCC
Confidence 34444444433 35764 99999999999999999877654
No 452
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=25.53 E-value=63 Score=28.87 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 62 KPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 62 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.|.+..+||+.+|++..++.|..++|.+.
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999885
No 453
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=25.46 E-value=66 Score=26.74 Aligned_cols=30 Identities=7% Similarity=-0.024 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHHHh
Q 010925 61 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL 91 (497)
Q Consensus 61 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 91 (497)
+-++|.++||..+|++..+|.|. +...+.+
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi-~r~L~~l 85 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRG-SNSLKAA 85 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHH-HHHHHHS
T ss_pred cCCcCHHHHHHHHCCChhhhhHH-HHHHHHc
Confidence 44699999999999999999998 4433433
No 454
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=25.43 E-value=39 Score=30.92 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=31.1
Q ss_pred ChhHHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+-.-|..||+=+-++ +|+ ..|+++||+.+||+..||-+.+..
T Consensus 19 ~r~~Il~AA~~lf~~-~G~~~~t~~~IA~~aGvs~~tlY~~F~s 61 (251)
T 3npi_A 19 STDTVLDIALSLFSE-LGFSDAKLEAIAKKSGMSKRMIHYHFGD 61 (251)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHCCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHH-cCccccCHHHHHHHHCCCHHHHHHHcCC
Confidence 344566666655443 576 599999999999999999877643
No 455
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=25.37 E-value=53 Score=29.28 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.-|..||+=+-+ .+|+. .|+++||+.+||+..||-+.|..
T Consensus 8 ~~Il~aA~~lf~-~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 48 (228)
T 3nnr_A 8 DKILLSSLELFN-DKGERNITTNHIAAHLAISPGNLYYHFRN 48 (228)
T ss_dssp HHHHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-HhChhhcCHHHHHHHhCCCCccchhcCCC
Confidence 345555555444 35875 99999999999999999877654
No 456
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=25.25 E-value=63 Score=30.40 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+.+ ..|+. .|+++||+.+||+..||-..|..
T Consensus 45 ~Il~AA~~lf~-e~G~~~~S~~~IA~~AGVs~~tlY~hF~s 84 (273)
T 3c07_A 45 LILETAMRLFQ-ERGYDRTTMRAIAQEAGVSVGNAYYYFAG 84 (273)
T ss_dssp HHHHHHHHHHH-HTCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-hCCccccCHHHHHHHHCCCHHHHHHHcCC
Confidence 45555554444 36875 89999999999999999877644
No 457
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=25.08 E-value=54 Score=28.80 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+-+ -+|+. .|+.+||+.+|||..||-..+..
T Consensus 15 ~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvskgtlY~~F~s 54 (210)
T 2xdn_A 15 QIIEAAERAFY-KRGVARTTLADIAELAGVTRGAIYWHFNN 54 (210)
T ss_dssp HHHHHHHHHHH-HHCSTTCCHHHHHHHHTCCTTHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCcHHHHHHHHCCChHHHHHHhCC
Confidence 35555554444 35875 99999999999999999776643
No 458
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=25.02 E-value=49 Score=26.85 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=29.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 206 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~~ 206 (497)
...|+.++|..+||+..||.+..+- ....+++.+..+++
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g-----~~~p~~~~l~~la~ 59 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG-----ETKPDIEKLIRLAT 59 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 3579999999999999999987653 23467777776653
No 459
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=24.98 E-value=44 Score=30.88 Aligned_cols=30 Identities=7% Similarity=0.236 Sum_probs=26.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
+-.+++.+||+.++|+.+|+++.++.|.+-
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 456899999999999999999999998653
No 460
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=24.95 E-value=32 Score=29.16 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..||+=+-+ -+|+. .|+++||+.+||+..||-..+..
T Consensus 18 ~Il~aa~~lf~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (156)
T 3ljl_A 18 KIMDAVVDQLL-RLGYDKMSYTTLSQQTGVSRTGISHHFPK 57 (156)
T ss_dssp HHHHHHHHHHH-HTHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HhChhhcCHHHHHHHHCCCHHHHHHHCCC
Confidence 45555554443 46775 99999999999999999877644
No 461
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=24.87 E-value=44 Score=28.59 Aligned_cols=38 Identities=18% Similarity=0.017 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+-+. +|+. .|+++||+.+||+..||-..+..
T Consensus 12 Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (186)
T 2jj7_A 12 ILKAAKKKFGE-RGYEGTSIQEIAKEAKVNVAMASYYFNG 50 (186)
T ss_dssp HHHHHHHHHHH-HHHHHCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCChhhhhhhcCC
Confidence 44444443332 5765 99999999999999999887754
No 462
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.73 E-value=71 Score=28.58 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+.+ ..|+. .|+.+||+.+||+..||-..|..
T Consensus 45 Il~aA~~lf~-~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 83 (225)
T 2id3_A 45 VLLAAGDALA-ADGFDALDLGEIARRAGVGKTTVYRRWGT 83 (225)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 4444443333 35875 99999999999999999877754
No 463
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=24.62 E-value=32 Score=28.31 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=26.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34799999999999999999999999864
No 464
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=24.61 E-value=58 Score=29.34 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHhc--cCHHHHHHHHHHHh
Q 010925 148 GLCGAALYVSALTHGLKFSKSDIVKIVH--ICEATLMKRLIEFE 189 (497)
Q Consensus 148 ~IaaAaLylAar~~g~~~t~~eIa~v~~--Vse~TIrkr~kE~~ 189 (497)
++.=|+||++ +.++|.++++++++ ++..+|+..+.++.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~ 49 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELN 49 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence 4555666653 78899999999999 99999999999996
No 465
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.61 E-value=43 Score=26.27 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=29.1
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
..+|+.++|..+||+..||.+..+ .....+++.+..++
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~-----g~~~p~~~~l~~ia 53 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYES-----GRSTPPTDVMMNIL 53 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTT-----TSSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc-----CCCCCCHHHHHHHH
Confidence 467999999999999999987543 23346777777774
No 466
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=24.61 E-value=46 Score=27.69 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=25.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+|+.+.++.|.+
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999998854
No 467
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=24.59 E-value=70 Score=30.13 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
+|.-.|-+.--+. .+..|+.+||+.+|++..||+++++-+
T Consensus 119 ~~~E~a~~~~~l~----~~g~t~~~iA~~lG~s~~~V~~~l~l~ 158 (230)
T 1vz0_A 119 SPVEEARGYQALL----EMGLTQEEVARRVGKARSTVANALRLL 158 (230)
T ss_dssp CHHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555554433222 467899999999999999999988765
No 468
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=24.59 E-value=44 Score=30.67 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=26.7
Q ss_pred cCCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.|.+++..++|+.+|||..|||..++.|..
T Consensus 36 pG~~L~E~~La~~lgVSRtpVREAl~~L~~ 65 (222)
T 3ihu_A 36 PGQRLVETDLVAHFGVGRNSVREALQRLAA 65 (222)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 367888999999999999999999998853
No 469
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=24.54 E-value=72 Score=28.85 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=32.1
Q ss_pred ChhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 145 KPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 145 ~P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+-.-|..||+=+.....|+. .|+++||+.+||+..||-..++.
T Consensus 6 tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 49 (220)
T 1z0x_A 6 SKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKN 49 (220)
T ss_dssp SHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHHhcCC
Confidence 44566667766665432874 99999999999999999766543
No 470
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=24.51 E-value=1.2e+02 Score=24.98 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 63 PFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 63 prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
|.++.+||+.++++..++.+....|.+.
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999999885
No 471
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=24.46 E-value=47 Score=29.32 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 148 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 148 ~IaaAaLylAar~~g~-~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
-|..|++-+-....|+ .+|+++||+.+||+..|+-..|+.
T Consensus 23 ~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~ 63 (185)
T 3o60_A 23 KLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKE 63 (185)
T ss_dssp HHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 3555555441123576 499999999999999999776643
No 472
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=24.45 E-value=19 Score=31.61 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=23.3
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHh
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
...|.+|||..+|||+.||++++.-..
T Consensus 150 ~g~s~~eIA~~lgis~~tV~~~l~ra~ 176 (184)
T 2q1z_A 150 GDLTHRELAAETGLPLGTIKSRIRLAL 176 (184)
T ss_dssp SCCSSCCSTTTCCCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999887653
No 473
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=24.34 E-value=1.4e+02 Score=25.19 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 143 GRKPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 143 GR~P~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|-.+.-+.-=+.++...-.|.. .|+.+||+.+++++.||.+.++.+.+
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
No 474
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=24.34 E-value=1.1e+02 Score=26.28 Aligned_cols=29 Identities=3% Similarity=0.039 Sum_probs=23.2
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++|+.+||.+.++.|.+
T Consensus 60 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 60 PEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 46799999999999999999999998854
No 475
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=24.20 E-value=33 Score=28.37 Aligned_cols=24 Identities=4% Similarity=0.163 Sum_probs=20.9
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
.+++.||+.+||+++||.+.-..+
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHhhh
Confidence 689999999999999999865554
No 476
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=24.13 E-value=16 Score=35.50 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHH
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+.|.+|||+.+|||.+|+++.|+.
T Consensus 6 ~~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 6 KSSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 578999999999999999999985
No 477
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=24.11 E-value=33 Score=30.68 Aligned_cols=23 Identities=9% Similarity=0.288 Sum_probs=21.3
Q ss_pred CCHhhHHHHhccCHHHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
+|+.|||+.+||+..||++.+++
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHT
T ss_pred EcHHHHHHHhCCCHHHHHHHHHC
Confidence 68999999999999999998876
No 478
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=24.03 E-value=72 Score=29.38 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+.+. .|+. .|+.+||+.+||+..||-..|..
T Consensus 53 Il~AA~~lf~e-~G~~~~Ti~~IA~~AGvs~~t~Y~yF~s 91 (260)
T 2of7_A 53 IRAATYGLIRQ-QGYEATTVEQIAERAEVSPSTVLRYFPT 91 (260)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-hCcccccHHHHHHHhCCChHHHHHHcCC
Confidence 44555544443 5875 99999999999999999877654
No 479
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=23.93 E-value=52 Score=28.87 Aligned_cols=30 Identities=3% Similarity=0.056 Sum_probs=26.5
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~t 191 (497)
.-+.++.+|++.+|++.+||.+.++.|.+.
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999654
No 480
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=23.86 E-value=67 Score=30.59 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+||+.+|++.+|+.++++.|.+
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4699999999999999999999999864
No 481
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.80 E-value=67 Score=28.43 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 186 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~k 186 (497)
.-|.-||+-+-+ -.|+. .|+++||+.+|||..||-..+.
T Consensus 12 ~~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~gtlY~yF~ 51 (209)
T 2gfn_A 12 RALADAVLALIA-REGISAVTTRAVAEESGWSTGVLNHYFG 51 (209)
T ss_dssp HHHHHHHHHHHH-HHCGGGCCHHHHHHHHSSCHHHHHHHTS
T ss_pred HHHHHHHHHHHH-HhCcccCCHHHHHHHHCCCcchHHhcCC
Confidence 345555554443 36875 8999999999999999976653
No 482
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=23.78 E-value=17 Score=35.25 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCHhhHHHHhccCHHHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.|.+|||+.+|||.+|+.+.|+.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 68999999999999999999986
No 483
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=23.78 E-value=58 Score=30.24 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.6
Q ss_pred cCCCC-CHhhHHHHhccCHHHHHHHHHHHh
Q 010925 161 HGLKF-SKSDIVKIVHICEATLMKRLIEFE 189 (497)
Q Consensus 161 ~g~~~-t~~eIa~v~~Vse~TIrkr~kE~~ 189 (497)
.|.++ +..++|+.+|||..|||..++.+.
T Consensus 24 pG~~LpsE~~La~~lgVSRtpVREAL~~L~ 53 (239)
T 2di3_A 24 IGDHLPSERALSETLGVSRSSLREALRVLE 53 (239)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36778 578999999999999999999884
No 484
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=23.72 E-value=45 Score=26.86 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=28.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
...|+.++|+.+||+..||.+-.+- ....+++.+..++
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G-----~~~ps~~~l~~ia 77 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN-----SRNLTIKSLELIM 77 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-----CSCCBHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC-----CCCCCHHHHHHHH
Confidence 5689999999999999999876432 2356677666664
No 485
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=23.65 E-value=39 Score=28.50 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHHHH
Q 010925 149 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 149 IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
|..||+=+.+ -.|+. .|+.+||+.+||+..||-..|..
T Consensus 9 Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (170)
T 3egq_A 9 IIEAALRLYM-KKPPHEVSIEEIAREAKVSKSLIFYHFES 47 (170)
T ss_dssp HHHHHHHHHT-TSCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH-hcCCccCcHHHHHHHhCCCchhHHHHcCC
Confidence 3344443332 46774 99999999999999999877654
No 486
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.65 E-value=1.8e+02 Score=24.46 Aligned_cols=30 Identities=3% Similarity=-0.073 Sum_probs=22.0
Q ss_pred CCCCCHhhHHHHh--------c--cCHHHHHHHHHHHhcC
Q 010925 162 GLKFSKSDIVKIV--------H--ICEATLMKRLIEFENT 191 (497)
Q Consensus 162 g~~~t~~eIa~v~--------~--Vse~TIrkr~kE~~~t 191 (497)
+-..|..+|+..+ | ||..||++.++.....
T Consensus 106 ~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~ 145 (149)
T 1k78_A 106 NPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQ 145 (149)
T ss_dssp CTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC---
T ss_pred CcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcC
Confidence 3457888888876 5 8999999999876554
No 487
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=23.63 E-value=41 Score=29.05 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHHHhccCHHHHHHHH
Q 010925 147 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 185 (497)
Q Consensus 147 ~~IaaAaLylAar~~g~~-~t~~eIa~v~~Vse~TIrkr~ 185 (497)
.-|..||+=+-+ -+|+. .|+.+||+.+|||..||-..+
T Consensus 10 e~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~~tlY~~F 48 (178)
T 4hku_A 10 EIILNMAEKIIY-EKGMEKTTLYDIASNLNVTHAALYKHY 48 (178)
T ss_dssp HHHHHHHHHHHH-HHCGGGCCHHHHHHHTTSCGGGGGGTC
T ss_pred HHHHHHHHHHHH-HhCcccccHHHHHHHhCcCHhHHHHHC
Confidence 345555554433 36874 899999999999999996544
No 488
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.58 E-value=89 Score=28.11 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=32.3
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCHhhHHHHhccCHHHHHHHHHH
Q 010925 144 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 187 (497)
Q Consensus 144 R~P~~IaaAaLylAar~~g~~~t~~eIa~v~~Vse~TIrkr~kE 187 (497)
.+..-|..||+=+... .| ..|+++||+.+||+..||-..+..
T Consensus 11 ~~r~~Il~aA~~l~~~-~G-~~s~~~IA~~aGvs~~tlY~hF~~ 52 (213)
T 2g7g_A 11 LDRERIAEAALELVDR-DG-DFRMPDLARHLNVQVSSIYHHAKG 52 (213)
T ss_dssp CCHHHHHHHHHHHHHH-HS-SCCHHHHHHHTTSCHHHHHTTSCH
T ss_pred CCHHHHHHHHHHHHHH-cC-CCCHHHHHHHhCCCHhHHHHHcCC
Confidence 3445677777766554 57 999999999999999999766544
No 489
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=23.55 E-value=17 Score=35.56 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
+.|++|||+.+|||.+|+++.|+.-
T Consensus 3 ~~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 3689999999999999999999865
No 490
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=23.44 E-value=54 Score=28.09 Aligned_cols=27 Identities=4% Similarity=0.143 Sum_probs=25.2
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
.+|+.+|++.++|+.+||.+.++.+.+
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999864
No 491
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=23.41 E-value=46 Score=26.58 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=28.4
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
..+|+.++|..+||+..||.+-.+- ....+++.+..++
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~l~ 67 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING-----QRSITVDIAIRLG 67 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CcCCCHHHHHHHH
Confidence 4689999999999999999986542 2345666666554
No 492
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=23.36 E-value=46 Score=26.58 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=29.0
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 205 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~t~~~~Lt~~ef~~~~ 205 (497)
...|+.++|..+||+..||.+..+- .....+++.+..++
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g----~~~~p~~~~l~~ia 51 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN----LQTNPSIQFLEKVS 51 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT----CCSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHH
Confidence 4689999999999999999876542 03345667666664
No 493
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=23.34 E-value=1.5e+02 Score=26.79 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=22.5
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
-..|..+||+.+||+.+|+.+.++..
T Consensus 174 ~G~s~~~Ia~~l~is~~tv~r~l~~~ 199 (209)
T 2r0q_C 174 EGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhcc
Confidence 34799999999999999999887654
No 494
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=23.31 E-value=68 Score=26.69 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=23.6
Q ss_pred CHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 166 SKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 166 t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
|+.+|++.++++.+||.+.++.+.+
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 9999999999999999999999864
No 495
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=23.26 E-value=90 Score=26.82 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcChHHHHHHHHHHHHH
Q 010925 51 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 90 (497)
Q Consensus 51 ACLYiACR~e~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 90 (497)
.+|++.....+-+.++.+||+.++++..++.+....|.+.
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 89 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR 89 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 3444444443578999999999999999999999999884
No 496
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=22.99 E-value=18 Score=35.47 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCCHhhHHHHhccCHHHHHHHHHHH
Q 010925 164 KFSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 164 ~~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
..|.+|||+.+|||.+|+++.|+.-
T Consensus 12 ~~ti~diA~~agVS~~TVSr~Ln~~ 36 (355)
T 3e3m_A 12 PVTMRDVAKAAGVSRMTVSRALKKD 36 (355)
T ss_dssp -------------------------
T ss_pred CCcHHHHHHHhCCCHHHHHHHHCCC
Confidence 4789999999999999999999754
No 497
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=22.99 E-value=18 Score=35.00 Aligned_cols=24 Identities=25% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCHhhHHHHhccCHHHHHHHHHHH
Q 010925 165 FSKSDIVKIVHICEATLMKRLIEF 188 (497)
Q Consensus 165 ~t~~eIa~v~~Vse~TIrkr~kE~ 188 (497)
.|.+|||+.+|||..|+++.|+.-
T Consensus 3 ~ti~diA~~agVS~~TVSrvln~~ 26 (330)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNT 26 (330)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCC
Confidence 589999999999999999999864
No 498
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=22.96 E-value=45 Score=27.89 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=26.0
Q ss_pred CCCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 162 GLKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 162 g~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
+-.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 34699999999999999999999999864
No 499
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=22.88 E-value=2.3e+02 Score=23.24 Aligned_cols=28 Identities=11% Similarity=-0.024 Sum_probs=25.7
Q ss_pred CCCCHhhHHHHhccCHHHHHHHHHHHhc
Q 010925 163 LKFSKSDIVKIVHICEATLMKRLIEFEN 190 (497)
Q Consensus 163 ~~~t~~eIa~v~~Vse~TIrkr~kE~~~ 190 (497)
-.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 5789999999999999999999999864
No 500
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=22.84 E-value=53 Score=32.92 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=27.3
Q ss_pred cCCCCCHhhHHHHh--ccCHHHHHHHHHHHhc
Q 010925 161 HGLKFSKSDIVKIV--HICEATLMKRLIEFEN 190 (497)
Q Consensus 161 ~g~~~t~~eIa~v~--~Vse~TIrkr~kE~~~ 190 (497)
.+.+++.+++++.. +||+.|||+=+.++.+
T Consensus 33 ~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~ 64 (338)
T 1stz_A 33 NKKPVSSQRVLEVSNIEFSSATIRNDMKKLEY 64 (338)
T ss_dssp HCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 46789999999999 9999999999998765
Done!