BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010926
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
pdb|2RDY|B Chain B, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
Length = 803
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 200/485 (41%), Positives = 269/485 (55%), Gaps = 35/485 (7%)
Query: 13 LKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKAL 72
LKI F+ PA +T+A+PIGNG LGA V+G V E + LNEDTLW+G P D+ NP A + L
Sbjct: 3 LKIQFDFPASFWTEALPIGNGNLGAXVFGKVEKERIALNEDTLWSGYPKDWNNPKAKEVL 62
Query: 73 SDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNT 132
VR L+ +Y EA S G Y GD+ + D H + Y RELDL+T
Sbjct: 63 PKVRELIAQEKYEEADQLSRDXXGPYTQSYLPFGDLNIFXD--HGQVVAPHYHRELDLST 120
Query: 133 ATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQ 192
V Y++G V++TRE F + PD+ IV +++ S+ G LSF LDSLL + S V G
Sbjct: 121 GIVTVTYTIGGVQYTRELFVTYPDRAIVVRLTASKEGFLSFRAKLDSLLRHVSSV-GAEH 179
Query: 193 IIMEGRCP--------GKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKV 244
+ G P + P + D +G F L + + G ++ L V
Sbjct: 180 YTISGTAPEHVSPSYYDEENPVRYGHPDXSQGXTFHGRL---AAVNEGGSLKVDADGLHV 236
Query: 245 EGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKL 304
G+ A L AS+SFD P S ++DP+ ++ +++I Y ++ RHL+DY KL
Sbjct: 237 XGATCATLYFSASTSFD-PSTGASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTKL 295
Query: 305 FHRVSIQLSRS--PKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLI 362
F+RVS+ L S P D TD +R+K + + D LVELLFQ+GRYL I
Sbjct: 296 FNRVSLHLGESIAPADXSTD-------------QRIKEYGS-RDLGLVELLFQYGRYLXI 341
Query: 363 SSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYL 422
+SSRPGTQ ANLQGIWNE+ W S +NIN E NYW + CNL+E +PL F+ L
Sbjct: 342 ASSRPGTQPANLQGIWNEETRAPWSSNYTLNINAEXNYWPAETCNLAELHKPLIHFIERL 401
Query: 423 SINGSKTAQVNYLASGWVIHHKTDIWAKSSA----DRGKVVWALWPMGGAWLCTHLWEHY 478
+ NG KTA++NY A GWV HH D+W +++ G VWA WP GG WL HLWEHY
Sbjct: 402 AANGKKTAEINYGARGWVAHHNADLWGQTAPVGDFGHGDPVWAFWPXGGVWLTQHLWEHY 461
Query: 479 NYTMD 483
+ D
Sbjct: 462 TFGED 466
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 140/506 (27%), Positives = 237/506 (46%), Gaps = 54/506 (10%)
Query: 28 IPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYT------NPDAPKALSDVRSLVDS 81
+P GNG++G VWG V E + NE+TLWTG PG T N + + +R+L
Sbjct: 51 LPFGNGKIGGTVWGEVSRERVTFNEETLWTGGPGSSTSYNGGNNETKGQNGATLRALNKQ 110
Query: 82 GQYAEATAASVKLFG--HPADVYQLL--GDIELEFDDSHLKYAEETYRRELDLNTATARV 137
T L G + A+ L GDI L++ + E YRR+L+L+ A V
Sbjct: 111 LANGAETVNPGNLTGGENAAEQGNYLNWGDIYLDYGFNDTTVTE--YRRDLNLSKGKADV 168
Query: 138 KYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEG 197
+ V +TRE+F+SNPD V+V +++ S++G L+FNVS+ + N +Y ++G
Sbjct: 169 TFKHDGVTYTREYFASNPDNVMVARLTASKAGKLNFNVSMPT---NTNYSKTGETTTVKG 225
Query: 198 RCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALED-KKLKVEGSDWAVLLLVA 256
+ K ++ G+ +++ +++ + + GT+S D LKV + L + A
Sbjct: 226 DT----LTVKGALGNN--GLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAVTLYIAA 279
Query: 257 SSSFDG--PFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSR 314
++ + P ++ + + +Q N Y+ + H+DD+ ++ RV I L +
Sbjct: 280 ATDYKQKYPSYRTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQ 339
Query: 315 SPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQV-AN 373
S + D + A + S T + L L++++GRYL I SSR +Q+ +N
Sbjct: 340 SGHSSDGAVAT----DALLKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSN 395
Query: 374 LQGIW------NEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGS 427
LQGIW N + W S H+N+NL+MNYW + N+ E EPL +++ L G
Sbjct: 396 LQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGR 455
Query: 428 KTAQVNYLA-------------SGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHL 474
TA+V A G++ H + + ++ + W P W+ ++
Sbjct: 456 VTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNV 514
Query: 475 WEHYNYT-----MDRVRFLFSISCLF 495
+E Y Y+ +DRV L F
Sbjct: 515 YEAYEYSGDPALLDRVYALLKEESHF 540
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 140/506 (27%), Positives = 237/506 (46%), Gaps = 54/506 (10%)
Query: 28 IPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYT------NPDAPKALSDVRSLVDS 81
+P GNG++G VWG V E + NE+TLWTG PG T N + + +R+L
Sbjct: 52 LPFGNGKIGGTVWGEVSRERVTFNEETLWTGGPGSSTSYNGGNNETKGQNGATLRALNKQ 111
Query: 82 GQYAEATAASVKLFG--HPADVYQLL--GDIELEFDDSHLKYAEETYRRELDLNTATARV 137
T L G + A+ L GDI L++ + E YRR+L+L+ A V
Sbjct: 112 LANGAETVNPGNLTGGENAAEQGNYLNWGDIYLDYGFNDTTVTE--YRRDLNLSKGKADV 169
Query: 138 KYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEG 197
+ V +TRE+F+SNPD V+V +++ S++G L+FNVS+ + N +Y ++G
Sbjct: 170 TFKHDGVTYTREYFASNPDNVMVARLTASKAGKLNFNVSMPT---NTNYSKTGETTTVKG 226
Query: 198 RCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALED-KKLKVEGSDWAVLLLVA 256
+ K ++ G+ +++ +++ + + GT+S D LKV + L + A
Sbjct: 227 DT----LTVKGALGNN--GLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAVTLYIAA 280
Query: 257 SSSFDG--PFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSR 314
++ + P ++ + + +Q N Y+ + H+DD+ ++ RV I L +
Sbjct: 281 ATDYKQKYPSYRTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQ 340
Query: 315 SPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQV-AN 373
S + D + A + S T + L L++++GRYL I SSR +Q+ +N
Sbjct: 341 SGHSSDGAVAT----DALLKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSN 396
Query: 374 LQGIW------NEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGS 427
LQGIW N + W S H+N+NL+MNYW + N+ E EPL +++ L G
Sbjct: 397 LQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGR 456
Query: 428 KTAQVNYLA-------------SGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHL 474
TA+V A G++ H + + ++ + W P W+ ++
Sbjct: 457 VTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNV 515
Query: 475 WEHYNYT-----MDRVRFLFSISCLF 495
+E Y Y+ +DRV L F
Sbjct: 516 YEAYEYSGDPALLDRVYALLKEESHF 541
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 140/506 (27%), Positives = 237/506 (46%), Gaps = 54/506 (10%)
Query: 28 IPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYT------NPDAPKALSDVRSLVDS 81
+P GNG++G VWG V E + NE+TLWTG PG T N + + +R+L
Sbjct: 52 LPFGNGKIGGTVWGEVSRERVTFNEETLWTGGPGSSTSYNGGNNETKGQNGATLRALNKQ 111
Query: 82 GQYAEATAASVKLFG--HPADVYQLL--GDIELEFDDSHLKYAEETYRRELDLNTATARV 137
T L G + A+ L GDI L++ + E YRR+L+L+ A V
Sbjct: 112 LANGAETVNPGNLTGGENAAEQGNYLNWGDIYLDYGFNDTTVTE--YRRDLNLSKGKADV 169
Query: 138 KYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEG 197
+ V +TRE+F+SNPD V+V +++ S++G L+FNVS+ + N +Y ++G
Sbjct: 170 TFKHDGVTYTREYFASNPDNVMVARLTASKAGKLNFNVSMPT---NTNYSKTGETTTVKG 226
Query: 198 RCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALED-KKLKVEGSDWAVLLLVA 256
+ K ++ G+ +++ +++ + + GT+S D LKV + L + A
Sbjct: 227 DT----LTVKGALGNN--GLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAVTLYIAA 280
Query: 257 SSSFDG--PFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSR 314
++ + P ++ + + +Q N Y+ + H+DD+ ++ RV I L +
Sbjct: 281 ATDYKQKYPSYRTGETAAEVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQ 340
Query: 315 SPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQV-AN 373
S + D + A + S T + L L++++GRYL I SSR +Q+ +N
Sbjct: 341 SGHSSDGAVAT----DALLKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSN 396
Query: 374 LQGIW------NEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGS 427
LQGIW N + W S H+N+NL+MNYW + N+ E EPL +++ L G
Sbjct: 397 LQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGR 456
Query: 428 KTAQVNYLA-------------SGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHL 474
TA+V A G++ H + + ++ + W P W+ ++
Sbjct: 457 VTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNV 515
Query: 475 WEHYNYT-----MDRVRFLFSISCLF 495
+E Y Y+ +DRV L F
Sbjct: 516 YEAYEYSGDPALLDRVYALLKEESHF 541
>pdb|2FY2|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY3|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provides Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY4|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY5|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
Length = 612
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L +R LV Q+ ++ A V+ FG P + + L LE + + E + ++ LN
Sbjct: 29 LQCMRHLVSEEQFRKSQAI-VQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLN 87
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSE-SGSLSFNVSLDSLLDNHS 185
A S V F R+HF DQ+ + + S SG LS+ +LLD+HS
Sbjct: 88 NRLALPVNSSPAVIFARQHFPGTDDQL---RFAASLISGVLSYK----ALLDSHS 135
>pdb|1T1U|A Chain A, Structural Insights And Functional Implications Of Choline
Acetyltransferase
Length = 639
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L ++ LV Q+ ++ A VK FG P + + L + LE + + E + ++ LN
Sbjct: 38 LQCMQHLVPEEQFRKSQAI-VKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLN 96
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHS 185
A S V F R+HF DQ+ + SG LS+ +LLD+HS
Sbjct: 97 NRLALPVNSSPAVIFARQHFQDTNDQLRFA--ACLISGVLSYK----TLLDSHS 144
>pdb|1Q6X|A Chain A, Crystal Structure Of Rat Choline Acetyltransferase
pdb|1Q6X|B Chain B, Crystal Structure Of Rat Choline Acetyltransferase
Length = 644
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L ++ LV Q+ ++ A VK FG P + + L + LE + + E + ++ LN
Sbjct: 39 LQCMQHLVPEEQFRKSQAI-VKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLN 97
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHS 185
A S V F R+HF DQ+ + SG LS+ +LLD+HS
Sbjct: 98 NRLALPVNSSPAVIFARQHFQDTNDQLRFA--ACLISGVLSYK----TLLDSHS 145
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
pdb|2WUS|A Chain A, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
pdb|2WUS|B Chain B, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
Length = 344
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 111 EFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISG 165
E D++ ++Y ETYR + TA RVK +GNV F S + + T +SG
Sbjct: 181 EMDEAIVQYVRETYRVAIGERTA-ERVKIEIGNV------FPSKENDELETTVSG 228
>pdb|3EP1|A Chain A, Structure Of The Pgrp-Hd From Alvinella Pompejana
pdb|3EP1|B Chain B, Structure Of The Pgrp-Hd From Alvinella Pompejana
Length = 176
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 40 WGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRS-LVDSGQYAEATAASVKLFGHP 98
WG V T + ++ V GD+ + +AL D S L+ GQ AE ++ +L P
Sbjct: 96 WGVVGQHTKGRDSHSIGVAVIGDFGKKEPSQALQDALSKLIICGQAAEELSSGARLRTTP 155
Query: 99 A 99
A
Sbjct: 156 A 156
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 454 DRGKVVWALWPMGGAWLCTHLWEHYNYTMDRVRFL 488
++G+V + ++ MGGA LWE Y +D V F+
Sbjct: 59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 45/193 (23%)
Query: 75 VRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETY--RRELDLNT 132
VR+L +SG+ AE T ++ A + LL ++D SH ++A E R +L +
Sbjct: 17 VRALYESGRRAEITVVAINELADAAGMAHLL-----KYDTSHGRFAWEVRQERDQLFVGD 71
Query: 133 ATARVKYS----------------------VGNVEFTREHFSSNPDQVIVTKISGSE-SG 169
RV + G+ E H ++ +V+ + ++
Sbjct: 72 DAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDA 131
Query: 170 SLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISD 229
++ + V+ D L H +I+ C I P DD GI+ + I
Sbjct: 132 TVVYGVNQDQLRAEH-------RIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIH--- 181
Query: 230 DRGTISALEDKKL 242
SA+ D+++
Sbjct: 182 -----SAMHDQQV 189
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 45/193 (23%)
Query: 75 VRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETY--RRELDLNT 132
VR+L +SG+ AE T ++ A + LL ++D SH ++A E R +L +
Sbjct: 18 VRALYESGRRAEITVVAINELADAAGMAHLL-----KYDTSHGRFAWEVRQERDQLFVGD 72
Query: 133 ATARVKYS----------------------VGNVEFTREHFSSNPDQVIVTKISGSE-SG 169
RV + G+ E H ++ +V+ + ++
Sbjct: 73 DAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDA 132
Query: 170 SLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISD 229
++ + V+ D L H +I+ C I P DD GI+ + I
Sbjct: 133 TVVYGVNQDQLRAEH-------RIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIH--- 182
Query: 230 DRGTISALEDKKL 242
SA+ D+++
Sbjct: 183 -----SAMHDQQV 190
>pdb|3FYS|A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein
From Bacillus Subtilis
Length = 315
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 119 YAEETYRRELDL------------NTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGS 166
+ EETYR E++L N + +G + E + D VI +S
Sbjct: 66 FREETYREEIELDWKSFYEEVKKHNELPTTSQPPIGELVALYEELGKSYDAVISIHLSSG 125
Query: 167 ESGSLSFNVSLDSLLDN 183
SG+ S + DS++DN
Sbjct: 126 ISGTFSSAAAADSMVDN 142
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 26/230 (11%)
Query: 85 AEATAASVKLFGHPADVYQLLG-DIELEFDDSHLKYAEETYRRELDLNTATARVKYSV-- 141
E AS L A V +L G ++E DD+ + R ++T ++ +SV
Sbjct: 223 GEGAYASAPLLDDIAAVQKLYGANLETRADDTVYGFNSTADRDFYSATSSTDKLIFSVWD 282
Query: 142 --GNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRC 199
GN FS N ++ +T S S+ G ++ NVS+ + + + G+ ++ G
Sbjct: 283 GGGNDTLDFSGFSQNQ-KINLTAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLIGND 341
Query: 200 PGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSS 259
+ A ND G + +L D A+ D K A ++ S
Sbjct: 342 AANVLKGGA-GNDIIYGGGGADVLWGGTGSDTFVFGAVSDSTPKA-----ADIIKDFQSG 395
Query: 260 FDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVS 309
FD K D ++A+ + L++ D +T H D +H+ S
Sbjct: 396 FD---------KID-----LTAITKLGGLNFVDAFTGHAGDAIVSYHQAS 431
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 26/230 (11%)
Query: 85 AEATAASVKLFGHPADVYQLLG-DIELEFDDSHLKYAEETYRRELDLNTATARVKYSV-- 141
E AS L A V +L G ++E DD+ + R ++T ++ +SV
Sbjct: 223 GEGAYASAPLLDDIAAVQKLYGANLETRADDTVYGFNSTADRDFYSATSSTDKLIFSVWD 282
Query: 142 --GNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRC 199
GN FS N ++ +T S S+ G ++ NVS+ + + + G+ ++ G
Sbjct: 283 GGGNDTLDFSGFSQNQ-KINLTAGSFSDVGGMTGNVSIAQGVTIENAIGGSGNDLLIGND 341
Query: 200 PGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSS 259
+ A ND G + +L D A+ D K A ++ S
Sbjct: 342 AANVLKGGA-GNDIIYGGGGADVLWGGTGSDTFVFGAVSDSTPKA-----ADIIKDFQSG 395
Query: 260 FDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVS 309
FD K D ++A+ + L++ D +T H D +H+ S
Sbjct: 396 FD---------KID-----LTAITKLGGLNFVDAFTGHAGDAIVSYHQAS 431
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 124 YRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSF 173
Y + L+L+++ A Y GNV +E + D +G E+G L +
Sbjct: 80 YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY 129
>pdb|2AF4|C Chain C, Phosphotransacetylase From Methanosarcina Thermophila Co-
Crystallized With Coenzyme A
pdb|2AF4|D Chain D, Phosphotransacetylase From Methanosarcina Thermophila Co-
Crystallized With Coenzyme A
Length = 333
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 74 DVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIEL 110
D+R+L + + E A + L G+ AD+ L GD++L
Sbjct: 26 DIRTLQAAAKILERGIADIVLVGNEADIKALAGDLDL 62
>pdb|1QZT|A Chain A, Phosphotransacetylase From Methanosarcina Thermophila
pdb|1QZT|B Chain B, Phosphotransacetylase From Methanosarcina Thermophila
pdb|1QZT|C Chain C, Phosphotransacetylase From Methanosarcina Thermophila
pdb|1QZT|D Chain D, Phosphotransacetylase From Methanosarcina Thermophila
pdb|2AF3|C Chain C, Phosphotransacetylase From Methanosarcina Thermophila
Soaked With Coenzyme A
pdb|2AF3|D Chain D, Phosphotransacetylase From Methanosarcina Thermophila
Soaked With Coenzyme A
Length = 333
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 74 DVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIEL 110
D+R+L + + E A + L G+ AD+ L GD++L
Sbjct: 26 DIRTLQAAAKILERGIADIVLVGNEADIKALAGDLDL 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,671,966
Number of Sequences: 62578
Number of extensions: 666575
Number of successful extensions: 1889
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1861
Number of HSP's gapped (non-prelim): 20
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)