Query 010926
Match_columns 497
No_of_seqs 145 out of 765
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14498 Glyco_hyd_65N_2: Glyc 100.0 2.9E-55 6.2E-60 429.6 22.8 231 15-262 1-235 (236)
2 PRK13807 maltose phosphorylase 99.5 1.8E-11 3.9E-16 137.5 29.6 169 272-490 270-450 (756)
3 COG1554 ATH1 Trehalose and mal 99.4 4.3E-11 9.2E-16 131.5 24.3 172 274-489 269-458 (772)
4 PF10222 DUF2152: Uncharacteri 98.2 0.00015 3.2E-09 79.6 22.1 168 127-316 136-322 (604)
5 PF03632 Glyco_hydro_65m: Glyc 97.5 0.00011 2.4E-09 76.7 4.6 96 386-491 30-131 (370)
6 KOG4125 Acid trehalase [Carboh 97.4 0.13 2.8E-06 54.1 25.6 168 278-491 210-394 (682)
7 PF03636 Glyco_hydro_65N: Glyc 87.7 1.3 2.7E-05 44.0 6.3 59 121-179 94-162 (255)
8 TIGR01577 oligosac_amyl oligos 72.5 54 0.0012 36.9 13.2 31 278-308 210-240 (616)
9 PF12439 GDE_N: Glycogen debra 44.8 1.5E+02 0.0032 28.8 9.2 52 124-176 75-127 (223)
10 PF05592 Bac_rhamnosid: Bacter 41.9 18 0.00039 39.4 2.5 25 467-491 206-230 (509)
11 PF11279 DUF3080: Protein of u 28.0 35 0.00076 35.1 1.8 25 289-313 292-316 (316)
12 COG3017 LolB Outer membrane li 24.9 98 0.0021 29.7 4.0 84 85-177 115-200 (206)
13 smart00668 CTLH C-terminal to 23.5 1.1E+02 0.0024 22.1 3.4 24 71-94 4-27 (58)
14 PF15601 Imm42: Immunity prote 23.3 1E+02 0.0022 27.7 3.6 40 377-427 78-125 (134)
15 PF04685 DUF608: Protein of un 22.2 28 0.00061 36.5 -0.1 91 400-491 23-125 (365)
16 PF04316 FlgM: Anti-sigma-28 f 21.9 1.1E+02 0.0023 22.9 3.0 27 69-95 27-54 (57)
17 KOG1500 Protein arginine N-met 21.6 16 0.00035 37.7 -2.0 33 389-421 440-472 (517)
18 TIGR03824 FlgM_jcvi flagellar 20.3 84 0.0018 26.1 2.4 27 69-95 65-92 (95)
No 1
>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A.
Probab=100.00 E-value=2.9e-55 Score=429.63 Aligned_cols=231 Identities=41% Similarity=0.731 Sum_probs=190.8
Q ss_pred EEEcCCCCCcccccccccCccceeeecCCceeEEEEeccceecCCCCCCCCCCchhhHHHHHHHHHcCChHHHHHHHHhh
Q 010926 15 ITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKL 94 (497)
Q Consensus 15 l~~~~PA~~W~ealplGNGrlGamv~G~~~~e~i~lne~tlWsg~p~~~~~~~~~~~l~~iR~ll~~g~~~~A~~l~~~~ 94 (497)
|||++||..|+||||||||||||||||+|.+|+|+|||+|||||+|.+..+++.++.|++||+++++|||++|++|++++
T Consensus 1 Lwy~~PA~~W~ealPiGNG~lGamv~G~~~~E~i~lNe~tlWsg~p~~~~~~~~~~~L~~iR~l~~~g~~~~A~~l~~~~ 80 (236)
T PF14498_consen 1 LWYDKPASDWEEALPIGNGRLGAMVYGGPAKERIQLNEDTLWSGGPSDRTPPDAAEYLPEIRELLFEGDYEEAEELAEEN 80 (236)
T ss_dssp EEESS-GCCHHHSEEEESSSEEEEE---SSEEEEEEEETT-BSSSTTSSSSHHHHHHHHHHHHHHHTT-CCHHHHHHCCS
T ss_pred CccCChhhhhhhhcEecCccceEEecCCCCeEEEEEcchheECCCCccccCccHHHHHHHHHHHHHcCChhHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999888888899999999999999999999999876
Q ss_pred cC-CCC-CCCCCceeEEEEecCCCCccccCCeEEEEeccCcEEEEEEEeCCEEEEEEEEeecCCCEEEEEEEcCCCCceE
Q 010926 95 FG-HPA-DVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLS 172 (497)
Q Consensus 95 ~g-~~~-~~y~p~G~l~l~~~~~~~~~~~~~Y~R~LDl~~a~~~v~~~~~g~~~~r~~FvS~pd~Viv~~l~~~~~~~l~ 172 (497)
++ .+. ++|||+|+|.|++...... +++|+|+|||++|+++|+|+.+|+.|+|++|||+||+|||+||+++++++++
T Consensus 81 ~~~~~~~~~y~p~g~L~i~~~~~~~~--~~~Y~R~LDl~~a~~~v~~~~~g~~~~re~FaS~pd~viv~r~~~~~~~~l~ 158 (236)
T PF14498_consen 81 FGGEPGYGSYQPLGDLYIDFFPDAGD--VSDYRRELDLETAVATVSYTDGGVRYRREYFASRPDDVIVIRISASKPGGLN 158 (236)
T ss_dssp -B---HH--B---EEEEEEESSSS-----CEEEEEEETTTTEEEEEEEETTEEEEEEEEEETTTTEEEEEEEESSTT-EE
T ss_pred ccCCCccccCCcceEEEEEEeCCCCC--CCcEEEEEEccCcEEEEEEEECCEEEEEEEEEECCCCEEEEEEEcCCCCcEE
Confidence 54 333 7899999999995433334 5699999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCC--CcccccCCceEEEEEecCCCCCCCCCCCCCCCCCceEEEEEEEEEeCCCcEEEEecCCeEEEeCCcEE
Q 010926 173 FNVSLDSLLD--NHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWA 250 (497)
Q Consensus 173 ~~i~l~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~v~~~~~~~l~v~~a~~v 250 (497)
++++|.++.. ......+++.+.++|++| ..+|++|+++++|+.+| |+|+ ..+++|+|++|++|
T Consensus 159 ~~l~l~~~~~~~~~~~~~~~~~l~~~g~~~------------~~~g~~~~~~~~v~~~g--G~v~-~~~~~l~v~~A~~v 223 (236)
T PF14498_consen 159 LTLSLDRPLRTRSAVVTAGGGTLTLRGQAP------------GDNGMRFAGRVRVVATG--GTVT-ADGGGLRVEGADEV 223 (236)
T ss_dssp EEEEEEBSTTSCEEEEEEETTEEEEEEEE-------------TTTS-EEEEEEEEEECC--CECE-CCTTCEEEEEESEE
T ss_pred EEEEecCCcccccceEeecCCEEEEEEEeC------------CCCCeEEEEEEEEEeCC--CEEE-eeCCEEEEeCCCEE
Confidence 9999999863 333345678999999985 24799999999997665 8885 46779999999999
Q ss_pred EEEEEeeecCCC
Q 010926 251 VLLLVASSSFDG 262 (497)
Q Consensus 251 ~l~~~~~t~y~~ 262 (497)
+|++++.|+|++
T Consensus 224 ~l~~~~~T~y~~ 235 (236)
T PF14498_consen 224 TLYVSAATDYRG 235 (236)
T ss_dssp EEEEEEEESEET
T ss_pred EEEEEEEecCCC
Confidence 999999999974
No 2
>PRK13807 maltose phosphorylase; Provisional
Probab=99.49 E-value=1.8e-11 Score=137.54 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=120.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeEEecCCCCCCccccCCcCCCCCCCHHHHHHhcCCCCChHHHH
Q 010926 272 KDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVE 351 (497)
Q Consensus 272 ~~~~~~~~~~l~~a~~~~y~~L~~~H~~~~~~l~~R~~l~L~~~~~~~~~~~~~~~~~~~~pt~~rl~~~~~~~d~~L~~ 351 (497)
.++.+.+.+.++.+...+|++|+++|++.|+.+|++++|.+.+++ ..|+.
T Consensus 270 ~~~~~~a~~~~~~a~~~g~d~l~~~h~~~w~~~W~~~di~I~gd~-----------------~~q~a------------- 319 (756)
T PRK13807 270 SELLKAAEDLLNKAAEKGFEELLAAHTAAWAKRWEKSDVVIEGDD-----------------AAQQG------------- 319 (756)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHCCeEEcCCH-----------------HHHHH-------------
Confidence 345677778888888889999999999999999999999997532 12332
Q ss_pred HHHHhhhHhhhhcC--CCCCC---CCCCcccCCCCCCCCCCCCCccccccccccccc-cCCChhhhhHHHHHHHHHhhHh
Q 010926 352 LLFQFGRYLLISSS--RPGTQ---VANLQGIWNEDLSPTWDSAPHVNINLEMNYWQS-LPCNLSECQEPLFDFLTYLSIN 425 (497)
Q Consensus 352 l~f~~GRYLLissS--R~g~l---P~nLQGiWn~~~~ppW~sdY~~NiN~QMnYW~a-~~~nl~E~~~pl~~~~~~l~~~ 425 (497)
..|.-|-|+++. +.+.+ |.+|.| +.+ .|.+-|| +++--.|. .....||.+..|+.|-.+.++.
T Consensus 320 --lr~~~fhL~~s~~~~~~~~~i~a~GLsg---e~Y----~Gh~FWD--tE~f~lP~~~~~~~Pe~Ar~lL~YR~~~L~~ 388 (756)
T PRK13807 320 --IRFNIFQLFSTYYGEDARLNIGPKGFTG---EKY----GGATYWD--TEAYCVPFYLATADPEVTRNLLKYRYNQLPG 388 (756)
T ss_pred --HHHHHHHHHhccCCCCCCCCcCCCCCCc---CCc----CCeeeec--cchhhhhhhhhccCHHHHHHHHHHHHHhHHH
Confidence 233344466553 22222 444555 333 2333333 66666687 5678999999999999999999
Q ss_pred hHHHHHHhcCCccEEEecccCCCCCcCCCCCCCccccccc------hHHHHHHHHHHHhcccCCHHhHhhc
Q 010926 426 GSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPM------GGAWLCTHLWEHYNYTMDRVRFLFS 490 (497)
Q Consensus 426 gr~tA~~~Yg~~G~~~h~~td~wg~t~p~~~~~~~~~w~~------g~aWl~~~lwehY~yT~D~~fL~~~ 490 (497)
.|++|+++ |.+|...|..+. - |..+...|+. -.+=++..+|.||..|+|.+||++.
T Consensus 389 Ar~~A~~~-g~~GA~yPW~s~-~-------G~E~~~~w~~~~~e~HI~adIaya~~~Y~~~TgD~~fl~~~ 450 (756)
T PRK13807 389 AKENAKKQ-GLKGALYPMVTF-N-------GIECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDESYLKEE 450 (756)
T ss_pred HHHHHHHc-CCCccccceEcC-C-------CCcCCCCcCCCceeEechHHHHHHHHHHHHHhCCHHHHHhc
Confidence 99999995 999999876542 1 1112223333 3788999999999999999999864
No 3
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=99.40 E-value=4.3e-11 Score=131.51 Aligned_cols=172 Identities=17% Similarity=0.246 Sum_probs=118.6
Q ss_pred hHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhhcceeEEecCCCCCCccccCCcCCCCCCCHHHHHHhcCCCCChHHHHH
Q 010926 274 PTSESMS-ALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVEL 352 (497)
Q Consensus 274 ~~~~~~~-~l~~a~~~~y~~L~~~H~~~~~~l~~R~~l~L~~~~~~~~~~~~~~~~~~~~pt~~rl~~~~~~~d~~L~~l 352 (497)
..+.+.+ .++.+.+.+|++|+++|++.|..+|++++|.+++++. +|+.-+| -
T Consensus 269 ~~~~~~~~~~~~~~~~~y~~Ll~~h~~aW~~~W~~adI~Iegd~~-----------------~Q~avRf----------n 321 (772)
T COG1554 269 LLNAALEALLKLASKGGYEKLLAAHKAAWDDLWEKADIEIEGDPE-----------------AQQAVRF----------N 321 (772)
T ss_pred hhhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHhcCEEecCCHH-----------------HHHHHHH----------H
Confidence 3344443 5666778999999999999999999999999987432 3444333 2
Q ss_pred HHHhhhHhhhhcCC--CCC---CCCCCcccCCCCC--CCCCCCCCccccccccccccccCCChhhhhHHHHHHHHHhhHh
Q 010926 353 LFQFGRYLLISSSR--PGT---QVANLQGIWNEDL--SPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSIN 425 (497)
Q Consensus 353 ~f~~GRYLLissSR--~g~---lP~nLQGiWn~~~--~ppW~sdY~~NiN~QMnYW~a~~~nl~E~~~pl~~~~~~l~~~ 425 (497)
+|| |.+.++ +-. -|.+|.| +.+ ..-|. ++.---|....+.||++.-|+.|--..++.
T Consensus 322 LFh-----L~~~~~~~d~rlsIgaKGltG---egY~GhvfWD--------TEif~lP~l~~t~P~vArnLL~YR~~~L~~ 385 (772)
T COG1554 322 LFH-----LLQTTPGHDERLSIGAKGLTG---EGYGGHVFWD--------TEIFVLPFLLFTDPEVARNLLLYRYNTLPG 385 (772)
T ss_pred HHH-----HHhhccCcccCCCCCCCCcCc---cccCCeeeec--------chHHhhhhhhccChHHHHHHHHHHHhcCHH
Confidence 444 555543 222 3556766 554 34555 555555788899999999999999999999
Q ss_pred hHHHHHHhcCCccEEEecccCCCCC-cCCCC----CCCccccccc-----hHHHHHHHHHHHhcccCCHHhHhh
Q 010926 426 GSKTAQVNYLASGWVIHHKTDIWAK-SSADR----GKVVWALWPM-----GGAWLCTHLWEHYNYTMDRVRFLF 489 (497)
Q Consensus 426 gr~tA~~~Yg~~G~~~h~~td~wg~-t~p~~----~~~~~~~w~~-----g~aWl~~~lwehY~yT~D~~fL~~ 489 (497)
.|++|++ +|-.|...|..+-.-|. ++|.. ....|--|+. -.+=+|..+|.|+.+|+|++||++
T Consensus 386 Ak~nA~~-~G~~GAlyPW~S~~~G~E~t~~w~~~~~~~~~~~~~~~~E~Hin~dIAyAv~~Y~q~TgD~~yl~~ 458 (772)
T COG1554 386 AKENAKK-YGLKGALYPWESATDGDECTPEWEATFERTGWRVASSDREIHINADIAYAVWNYWQVTGDDSYLAD 458 (772)
T ss_pred HHHHHHH-cCCCcccceeeecCCCCccCCcccccccccccccCccccceehhhHHHHHHHHHHhhcCcHHHHHh
Confidence 9999999 59999988765422121 12210 1111222222 156678889999999999999986
No 4
>PF10222 DUF2152: Uncharacterized conserved protein (DUF2152); InterPro: IPR018795 This entry includes mainly uncharacterised proteins, though some are described as belonging to the glycoside hydrolase family 65.
Probab=98.25 E-value=0.00015 Score=79.59 Aligned_cols=168 Identities=13% Similarity=0.176 Sum_probs=93.1
Q ss_pred EEeccCcEEEEEEEe----CCEEEEEEEEeecC-CCEEEEEEEcCCCCceEEEEEEccCCCCcc--------cccC--Cc
Q 010926 127 ELDLNTATARVKYSV----GNVEFTREHFSSNP-DQVIVTKISGSESGSLSFNVSLDSLLDNHS--------YVNG--NN 191 (497)
Q Consensus 127 ~LDl~~a~~~v~~~~----~g~~~~r~~FvS~p-d~Viv~~l~~~~~~~l~~~i~l~~~~~~~~--------~~~~--~~ 191 (497)
-+|+.+|.+..--+. ++..++-++++++. .+|+|.+|+-+.|....+++.+..+..... ...+ ..
T Consensus 136 vv~fr~G~V~~~qC~~~~~~cv~Vs~~~YAHRTrPnLLVQeI~ItNP~~~~vtv~Ls~~~~~~~~~~~~~~~~~~~~~~e 215 (604)
T PF10222_consen 136 VVDFRNGIVHRVQCFKSERDCVCVSQQYYAHRTRPNLLVQEIQITNPTNRDVTVELSSPRSSNWPNSFSSSIEKVSDSHE 215 (604)
T ss_pred EEEEecCeEEEEEEEeecCCceEEEEEEEEecccCcEEEEEEEEECCCCCcEEEEEeCCCCCCccccceeEEEEecCCcc
Confidence 378889987654333 67888899999998 689998887776665566666655432211 0011 12
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCceEEEEEEEEEeCCCcEEEEecCCeEEEeCCcEEE--EEEEeeecCCCCCCCCCC
Q 010926 192 QIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAV--LLLVASSSFDGPFINPSD 269 (497)
Q Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~v~~~~~~~l~v~~a~~v~--l~~~~~t~y~~~~~~~~~ 269 (497)
....+|..+.. .++- + ..+.|+... -.++|+|+.-++.. ++.++.++-.-...+...
T Consensus 216 ~~v~sG~V~~~-----------~~~~-~-i~VaVv~~k--------lP~~iqV~~ks~~~~~~ltvV~yS~Pi~~~~~~~ 274 (604)
T PF10222_consen 216 YQVSSGKVPPP-----------EDSK-V-IVVAVVTKK--------LPSTIQVKAKSETKLTFLTVVNYSEPIDESKYKE 274 (604)
T ss_pred EEEEEEEEcCC-----------CCCc-E-EEEEEEeCC--------CCCCEEECCCceEEEEEEEEEEEeccccchhhhh
Confidence 33445554211 1111 1 112222111 13468887666554 333443332110000000
Q ss_pred CCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhhcceeEEecCCC
Q 010926 270 SKKDPTSESMSALQSIRN--LSYSDLYTRHLDDYQKLFHRVSIQLSRSP 316 (497)
Q Consensus 270 ~~~~~~~~~~~~l~~a~~--~~y~~L~~~H~~~~~~l~~R~~l~L~~~~ 316 (497)
..+...+.|.+.+..+.. .+.++|+++|++.|+.||. +.+.+..+.
T Consensus 275 ~~~~l~~~a~~em~~ll~~~~~~~~L~~eH~~aW~~Lw~-SG~~Is~sk 322 (604)
T PF10222_consen 275 TFEALEEQAKKEMKELLQSGMSVEDLLQEHVDAWSDLWS-SGFEISKSK 322 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh-ccccccccc
Confidence 111123446666666666 8999999999999999998 677776543
No 5
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=97.47 E-value=0.00011 Score=76.68 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=65.7
Q ss_pred CCCCCccccccccccccccCCChhhhhHHHHHHHHHhhHhhHHHHHHhcCCccEEEecccCCCCCcCCCCCCCccccccc
Q 010926 386 WDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPM 465 (497)
Q Consensus 386 W~sdY~~NiN~QMnYW~a~~~nl~E~~~pl~~~~~~l~~~gr~tA~~~Yg~~G~~~h~~td~wg~t~p~~~~~~~~~w~~ 465 (497)
+.|.+.|| +++=..|...-..||.+..|++|.-+.++..|++|++ +|++|++.|-.+...|. .+...|+.
T Consensus 30 Y~Gh~FWD--tE~~~~P~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPWeS~~~G~-------E~t~~~~~ 99 (370)
T PF03632_consen 30 YKGHVFWD--TEIFMLPFFLLTHPEAARSLLNYRYRTLPQARENARE-YGYKGAMYPWESARTGE-------ECTGPWPA 99 (370)
T ss_dssp TTTSB-TH--HHHCHHHHHHHS-HHHHHHHHHHHHTTHHHHHHHHHC-TT--S----SSBSS-SS-------B----HHH
T ss_pred cCCeeeec--chHHhcchHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceeecccccCcc-------ccCCCCCc
Confidence 45555555 7787889999999999999999999999999999999 59999999776644331 11123444
Q ss_pred h------HHHHHHHHHHHhcccCCHHhHhhcc
Q 010926 466 G------GAWLCTHLWEHYNYTMDRVRFLFSI 491 (497)
Q Consensus 466 g------~aWl~~~lwehY~yT~D~~fL~~~~ 491 (497)
| .+.++..+|+||..|+|.+||++..
T Consensus 100 ~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~~~g 131 (370)
T PF03632_consen 100 GDYEIHINADIAYAIWQYYQATGDEEFLREYG 131 (370)
T ss_dssp HTT-THHHHHHHHHHHHHHHHH---TTTTTHH
T ss_pred hHhhhcchHHHHHHHHHHHHhCCcHHHHHccC
Confidence 3 8899999999999999999998764
No 6
>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.13 Score=54.10 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHHhhhcceeEEecCCCCCCccccCCcCCCCCCCHHHHHHhcCCCCChHHHHHHHHh
Q 010926 278 SMSALQSIRNLSYS-DLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQF 356 (497)
Q Consensus 278 ~~~~l~~a~~~~y~-~L~~~H~~~~~~l~~R~~l~L~~~~~~~~~~~~~~~~~~~~pt~~rl~~~~~~~d~~L~~l~f~~ 356 (497)
+.+.|..+....-+ .|++.|.+.|..||+-..+++.. +-. | +..-.-
T Consensus 210 t~~~L~~~LQL~s~g~Ll~~H~QaW~~lW~d~f~~~~~--------------------~L~-----------L-~Q~~r~ 257 (682)
T KOG4125|consen 210 TNIGLAKMLQLNSKGKLLSSHKQAWYDLWNDAFIEIPS--------------------DLL-----------L-EQTARS 257 (682)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhhhccCc--------------------HHH-----------H-HHHHhh
Confidence 33445555444444 89999999999999988887643 111 1 112233
Q ss_pred hhHhhhhcCC----CCC-----CCCCCcccCCCCC------CCCCCCCCccccccccccccccCCChhhhhHHHHHHHHH
Q 010926 357 GRYLLISSSR----PGT-----QVANLQGIWNEDL------SPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTY 421 (497)
Q Consensus 357 GRYLLissSR----~g~-----lP~nLQGiWn~~~------~ppW~sdY~~NiN~QMnYW~a~~~nl~E~~~pl~~~~~~ 421 (497)
|.|-|.|+-- ++- -|.+| =|+.. .--|..|-|+ -|+-.-=+||.+.-++.|--+
T Consensus 258 slfYllS~LPqpk~~n~~~~GLSP~GL---snG~~E~~Y~GHvFWD~diWM--------~P~il~F~p~~A~~~L~YR~R 326 (682)
T KOG4125|consen 258 SLFYLLSNLPQPKDYNVSSDGLSPVGL---SNGLSEDSYGGHVFWDADIWM--------EPALLPFFPNVAQNMLNYRNR 326 (682)
T ss_pred hhhhHhhcCCCcCCCCccccCcCcccc---cCCcchhhcCCceeecchhhh--------hhhhhhcCHHHHHHHHHhhhh
Confidence 4444666521 111 23333 22211 1223322221 144444567889999999999
Q ss_pred hhHhhHHHHHHhcCCccEEEecccCCCCCc-CCCCCCCccccccchHHHHHHHHHHHhcccCCHHhHhhcc
Q 010926 422 LSINGSKTAQVNYLASGWVIHHKTDIWAKS-SADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRVRFLFSI 491 (497)
Q Consensus 422 l~~~gr~tA~~~Yg~~G~~~h~~td~wg~t-~p~~~~~~~~~w~~g~aWl~~~lwehY~yT~D~~fL~~~~ 491 (497)
.++..+.+|+. ||-.|.-.+..+---|-- ++.+....-.....+..=++..+ +|.-|.|.+|++-.-
T Consensus 327 tL~~Ak~nA~~-~GY~GA~FpWESA~~G~EV~~e~~~~~QE~Hin~dv~~Af~~--y~h~~~D~e~~~~t~ 394 (682)
T KOG4125|consen 327 TLSQAKLNAEK-YGYPGAIFPWESAKYGNEVSTEGPCVDQEYHINVDVAMAFSI--YLHEGIDDEYLRYTT 394 (682)
T ss_pred hHHHHHhhHHh-cCCCCccccccccccccccCCCCCceeEEEEecHHHHHHHHH--HHHhccchhhhccCC
Confidence 99999999998 599998876544222210 11110001112222333344333 455688988876543
No 7
>PF03636 Glyco_hydro_65N: Glycosyl hydrolase family 65, N-terminal domain ; InterPro: IPR005196 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) containing this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. This domain is believed to be essential for catalytic activity [] although its precise function remains unknown.; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=87.73 E-value=1.3 Score=43.97 Aligned_cols=59 Identities=22% Similarity=0.431 Sum_probs=37.2
Q ss_pred cCCeEEEEeccCcEEEEEEEe---C--CEEEEEEEEeecCC-CEEEEE--EEc-CCC-CceEEEEEEcc
Q 010926 121 EETYRRELDLNTATARVKYSV---G--NVEFTREHFSSNPD-QVIVTK--ISG-SES-GSLSFNVSLDS 179 (497)
Q Consensus 121 ~~~Y~R~LDl~~a~~~v~~~~---~--g~~~~r~~FvS~pd-~Viv~~--l~~-~~~-~~l~~~i~l~~ 179 (497)
+.+|+|.|||.+|+.+-++.- + ...++-+-|||..+ ++++++ |++ +.. +.+.+.-.++.
T Consensus 94 i~~~~r~LDm~~G~l~r~~~~~~~~G~~~~i~~~rfvS~~~~~l~~~~~~it~l~~~~g~i~i~~~id~ 162 (255)
T PF03636_consen 94 ISSYRRTLDMRTGILTRSFVWRTPSGRKIKIESERFVSMADPHLAAIRYEITPLNFDDGEITIESGIDG 162 (255)
T ss_dssp EEEEEEEEETTTTEEEEEEEEE-ETTEEEEEEEEEEE-SSSTTEEEEEEEEEE-SSS-EEEEE--EEE-
T ss_pred ccceEEEEEcccEEEEEEEEEEECCCCEEEEEEEEEEcCCCCeEEEEEEEEEECCCCceEEEEEEEeeC
Confidence 458999999999999877542 3 35667889999986 555544 455 222 35555544443
No 8
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=72.50 E-value=54 Score=36.87 Aligned_cols=31 Identities=19% Similarity=0.561 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhcce
Q 010926 278 SMSALQSIRNLSYSDLYTRHLDDYQKLFHRV 308 (497)
Q Consensus 278 ~~~~l~~a~~~~y~~L~~~H~~~~~~l~~R~ 308 (497)
+.+.+++....++++++++-++.|+++-++.
T Consensus 210 a~~~~~~~~~~~~~~~~~~~~~~W~~w~~~~ 240 (616)
T TIGR01577 210 ALEELEELRTLGFERIRSQTLADWEAYFGQA 240 (616)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 5566666667889999999999999998864
No 9
>PF12439 GDE_N: Glycogen debranching enzyme N terminal; InterPro: IPR024742 This domain is found in bacteria and archaea glycogen debranching enzyme, and is typically between 218 and 229 amino acids in length. Glycogen debranching enzyme catalyses the debranching of amylopectin in glycogen. This is done by transferring three glucose subunits of glycogen from one parallel chain to another. This has the effect of enabling the glucose residues to become more accessible for glycolysis [].
Probab=44.79 E-value=1.5e+02 Score=28.78 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=40.9
Q ss_pred eEEEEeccCcEEEEEEEeCCEEEEEEEEeecCCCEEEEEEE-cCCCCceEEEEE
Q 010926 124 YRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKIS-GSESGSLSFNVS 176 (497)
Q Consensus 124 Y~R~LDl~~a~~~v~~~~~g~~~~r~~FvS~pd~Viv~~l~-~~~~~~l~~~i~ 176 (497)
|-.+-+++ ..-.-.|..+++.+++++|.-+..|.++|+.+ -+++..+.++|+
T Consensus 75 ~L~~F~~~-~~P~w~y~~~~~~l~k~i~M~~g~Nt~~i~Y~l~~~~~~~~L~l~ 127 (223)
T PF12439_consen 75 YLESFRLE-PLPVWRYRVGDVVLEKRIFMVHGENTTVIRYRLLNGSEPVTLRLR 127 (223)
T ss_pred eeeEEEcC-CCeEEEEEECCEEEEEEEEEECCCCEEEEEEEEccCCCceEEEEE
Confidence 66777777 78888999999999999999999999999987 344444444443
No 10
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=41.89 E-value=18 Score=39.37 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcccCCHHhHhhcc
Q 010926 467 GAWLCTHLWEHYNYTMDRVRFLFSI 491 (497)
Q Consensus 467 ~aWl~~~lwehY~yT~D~~fL~~~~ 491 (497)
+.+....+|+||+||||++||++..
T Consensus 206 ~l~~i~~~~~~y~~tGD~~~l~~~~ 230 (509)
T PF05592_consen 206 SLAWIIIPWDYYLYTGDREFLEEYY 230 (509)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4456788999999999999998754
No 11
>PF11279 DUF3080: Protein of unknown function (DUF3080); InterPro: IPR021431 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently this family has no known function.
Probab=27.99 E-value=35 Score=35.07 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHhhhcceeEEec
Q 010926 289 SYSDLYTRHLDDYQKLFHRVSIQLS 313 (497)
Q Consensus 289 ~y~~L~~~H~~~~~~l~~R~~l~L~ 313 (497)
.|....++|+++||+||.|+.+..|
T Consensus 292 ~~~~a~~~Hv~~WQ~l~~~C~~~pG 316 (316)
T PF11279_consen 292 QFRQATKRHVQYWQQLFKRCGISPG 316 (316)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4556779999999999999988754
No 12
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=24.90 E-value=98 Score=29.72 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCCCCCCCCceeEEEEecCCCCccccCCeEEEEeccCcEEEEEEEeCCEEEEEEEEeec--CCCEEEEE
Q 010926 85 AEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSN--PDQVIVTK 162 (497)
Q Consensus 85 ~~A~~l~~~~~g~~~~~y~p~G~l~l~~~~~~~~~~~~~Y~R~LDl~~a~~~v~~~~~g~~~~r~~FvS~--pd~Viv~~ 162 (497)
++|++|.++..| --.|+..|..-..+..... ++|+ ||.+......+|..++..++-++--=+ +.+++..+
T Consensus 115 e~ae~Ll~el~G----~~lPl~~L~~Wi~G~P~~~--~~yr--l~~~~~l~~~ty~~~~~gW~v~Yl~y~~~~~~~lP~~ 186 (206)
T COG3017 115 EDAEELLQELTG----MDLPLESLRDWIRGLPGPG--TDYR--LDDDARLRHFTYEQDGSGWQVRYLRYNTQNQNALPRR 186 (206)
T ss_pred cCHHHHHHHhhC----CcccHHHHHHHHhcCCCCC--CCce--ecccccccceEEEecCCceEEEEEEecCCCCccccee
Confidence 356666666655 4457776665554422221 2554 666666677788888666655544333 34788888
Q ss_pred EEcCCCCceEEEEEE
Q 010926 163 ISGSESGSLSFNVSL 177 (497)
Q Consensus 163 l~~~~~~~l~~~i~l 177 (497)
|+-..++ ..+++++
T Consensus 187 lel~~~~-~~i~L~v 200 (206)
T COG3017 187 LELKRGS-QRIKLRV 200 (206)
T ss_pred eecCCCC-ceeEEEe
Confidence 8877655 4444443
No 13
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=23.52 E-value=1.1e+02 Score=22.13 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.5
Q ss_pred hHHHHHHHHHcCChHHHHHHHHhh
Q 010926 71 ALSDVRSLVDSGQYAEATAASVKL 94 (497)
Q Consensus 71 ~l~~iR~ll~~g~~~~A~~l~~~~ 94 (497)
.+.+||+++.+|++.+|.+.+..+
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~ 27 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSL 27 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 567899999999999999887653
No 14
>PF15601 Imm42: Immunity protein 42
Probab=23.34 E-value=1e+02 Score=27.67 Aligned_cols=40 Identities=25% Similarity=0.431 Sum_probs=29.6
Q ss_pred cCCCCC---CCCCCCCCccccccccccccccCCChhhhh-----HHHHHHHHHhhHhhH
Q 010926 377 IWNEDL---SPTWDSAPHVNINLEMNYWQSLPCNLSECQ-----EPLFDFLTYLSINGS 427 (497)
Q Consensus 377 iWn~~~---~ppW~sdY~~NiN~QMnYW~a~~~nl~E~~-----~pl~~~~~~l~~~gr 427 (497)
||..+. +|||+.+ |+ -.+++|++|. ..||+.+.+..+...
T Consensus 78 iWD~~dl~~~ppWg~~----i~-------~~i~~L~~yFvt~dG~~~f~~l~~a~~~a~ 125 (134)
T PF15601_consen 78 IWDIEDLSKQPPWGDN----IS-------PDITSLSDYFVTSDGKDLFEVLFRALESAI 125 (134)
T ss_pred eechhhcccCCCCccc----CC-------CCCCcHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 698544 8999633 33 4578999999 999999888776553
No 15
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=22.25 E-value=28 Score=36.51 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=1.6
Q ss_pred cccccCCChhhhhHHHHHHHHHhhH-hhHHHHHHhc-------CCccEEEeccc----CCCCCcCCCCCCCccccccchH
Q 010926 400 YWQSLPCNLSECQEPLFDFLTYLSI-NGSKTAQVNY-------LASGWVIHHKT----DIWAKSSADRGKVVWALWPMGG 467 (497)
Q Consensus 400 YW~a~~~nl~E~~~pl~~~~~~l~~-~gr~tA~~~Y-------g~~G~~~h~~t----d~wg~t~p~~~~~~~~~w~~g~ 467 (497)
+..+.....||+...+..-....+. +....-+.++ -.+|.+-|--. ++|..+....- .....|-=+.
T Consensus 23 ~s~al~~lfP~Le~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~vphdlg~p~~~P~~~~n~y~~-~~~~~~~D~~ 101 (365)
T PF04685_consen 23 ASFALLKLFPELERSMQRDFADAILSEDNTERKILYDGKIAPRKVRGAVPHDLGSPFDDPWDRTNAYNY-HDVYAWKDLN 101 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 6667777778888777766555432 2211111111 12466644433 44655432110 0122344467
Q ss_pred HHHHHHHHHHhcccCCHHhHhhcc
Q 010926 468 AWLCTHLWEHYNYTMDRVRFLFSI 491 (497)
Q Consensus 468 aWl~~~lwehY~yT~D~~fL~~~~ 491 (497)
.+....+|.+|..|+|.+||++..
T Consensus 102 ~~fVL~vyr~~~~TGD~~fL~~~w 125 (365)
T PF04685_consen 102 PKFVLQVYRDYKWTGDRDFLKEMW 125 (365)
T ss_dssp ---------------------EHH
T ss_pred ccccccccccccccccchhhhhHH
Confidence 889999999999999999998754
No 16
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=21.87 E-value=1.1e+02 Score=22.95 Aligned_cols=27 Identities=19% Similarity=0.524 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHcCChH-HHHHHHHhhc
Q 010926 69 PKALSDVRSLVDSGQYA-EATAASVKLF 95 (497)
Q Consensus 69 ~~~l~~iR~ll~~g~~~-~A~~l~~~~~ 95 (497)
.+.+.+||+.|.+|.|. .+++++..|+
T Consensus 27 ~~kV~~ik~~I~~G~Y~vd~~~iA~~ml 54 (57)
T PF04316_consen 27 AEKVAEIKAAIASGTYKVDAEKIAEKML 54 (57)
T ss_dssp HHHHHHHHHHHHTT-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 47899999999999998 5666666553
No 17
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=21.58 E-value=16 Score=37.72 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=30.0
Q ss_pred CCccccccccccccccCCChhhhhHHHHHHHHH
Q 010926 389 APHVNINLEMNYWQSLPCNLSECQEPLFDFLTY 421 (497)
Q Consensus 389 dY~~NiN~QMnYW~a~~~nl~E~~~pl~~~~~~ 421 (497)
-|+++|-++.--|.--++|..++-+|||+|-.-
T Consensus 440 SY~i~i~l~~~~~l~sSs~~lDLK~Py~R~t~~ 472 (517)
T KOG1500|consen 440 SYDITITLSAKMTLQSSSNKLDLKNPYFRYTGP 472 (517)
T ss_pred ceeEEEEEEeeeeeecccceeccCCcceeccCC
Confidence 589999999999999999999999999988654
No 18
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=20.25 E-value=84 Score=26.12 Aligned_cols=27 Identities=19% Similarity=0.513 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHcCChH-HHHHHHHhhc
Q 010926 69 PKALSDVRSLVDSGQYA-EATAASVKLF 95 (497)
Q Consensus 69 ~~~l~~iR~ll~~g~~~-~A~~l~~~~~ 95 (497)
.+.+++||++|.+|.|. .+++++..|+
T Consensus 65 ~~kV~~ik~aI~~G~Y~vd~~~iA~~ml 92 (95)
T TIGR03824 65 AEKVAEIKAAIANGSYKVDAEKIADKLL 92 (95)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 57899999999999998 7888887764
Done!