Query 010928
Match_columns 497
No_of_seqs 211 out of 1345
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 3.2E-57 7E-62 467.6 32.3 401 67-485 57-465 (467)
2 KOG1303 Amino acid transporter 100.0 3E-55 6.5E-60 440.1 33.3 405 55-487 23-437 (437)
3 KOG1304 Amino acid transporter 100.0 6.9E-55 1.5E-59 429.4 31.3 388 67-484 44-449 (449)
4 PLN03074 auxin influx permease 100.0 3.9E-49 8.5E-54 405.4 34.2 393 67-495 43-462 (473)
5 PF01490 Aa_trans: Transmembra 100.0 2.7E-53 5.8E-58 436.1 -0.4 392 68-481 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 1.1E-46 2.4E-51 376.6 25.3 400 68-487 4-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 5.9E-42 1.3E-46 317.7 3.5 388 68-489 115-519 (524)
8 COG0814 SdaC Amino acid permea 100.0 4.8E-32 1E-36 275.1 30.2 394 67-480 6-411 (415)
9 PRK10483 tryptophan permease; 99.9 3.4E-25 7.3E-30 221.3 30.0 380 66-476 7-402 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 3.9E-24 8.5E-29 215.9 32.6 372 69-473 2-391 (394)
11 PRK15132 tyrosine transporter 99.9 7.6E-24 1.7E-28 212.6 30.6 373 70-477 3-392 (403)
12 PRK09664 tryptophan permease T 99.9 5.6E-24 1.2E-28 212.3 28.5 380 68-477 7-404 (415)
13 TIGR00837 araaP aromatic amino 99.9 5E-23 1.1E-27 209.3 25.0 348 75-452 2-359 (381)
14 PRK13629 threonine/serine tran 99.9 2.2E-20 4.9E-25 186.5 29.8 391 74-477 23-439 (443)
15 TIGR00814 stp serine transport 99.8 3.5E-19 7.7E-24 179.5 24.3 378 73-470 6-396 (397)
16 PRK10655 potE putrescine trans 99.5 2.9E-10 6.3E-15 117.9 34.5 240 66-328 4-244 (438)
17 TIGR00905 2A0302 transporter, 99.4 6.2E-10 1.3E-14 116.5 32.8 247 67-331 6-256 (473)
18 PRK10435 cadB lysine/cadaverin 99.4 3.2E-10 7E-15 117.3 28.8 243 66-333 3-247 (435)
19 TIGR03810 arg_ornith_anti argi 99.4 1E-09 2.2E-14 114.8 32.7 362 68-452 1-380 (468)
20 PRK11021 putative transporter; 99.4 2.3E-09 5E-14 110.2 34.6 227 71-327 2-231 (410)
21 TIGR00912 2A0309 spore germina 99.4 1.2E-10 2.6E-15 117.6 24.4 338 69-450 2-352 (359)
22 TIGR00909 2A0306 amino acid tr 99.4 1.3E-09 2.8E-14 112.8 31.2 298 67-387 2-307 (429)
23 PRK10644 arginine:agmatin anti 99.4 4.9E-09 1.1E-13 108.9 35.1 241 66-329 6-247 (445)
24 TIGR00930 2a30 K-Cl cotranspor 99.4 2.4E-09 5.1E-14 119.2 34.2 250 65-327 73-334 (953)
25 KOG1287 Amino acid transporter 99.3 2.8E-10 6E-15 114.6 23.7 362 65-456 9-390 (479)
26 PRK15049 L-asparagine permease 99.3 8.3E-09 1.8E-13 108.4 32.6 358 67-451 27-405 (499)
27 TIGR01773 GABAperm gamma-amino 99.3 1.2E-08 2.6E-13 106.3 32.4 240 66-329 10-257 (452)
28 PRK11049 D-alanine/D-serine/gl 99.3 1.6E-08 3.4E-13 105.8 32.9 360 66-452 18-399 (469)
29 PRK10249 phenylalanine transpo 99.3 1.9E-08 4.1E-13 104.8 32.9 358 66-451 19-394 (458)
30 PRK10746 putative transport pr 99.3 2.9E-08 6.4E-13 103.4 33.8 360 66-452 8-388 (461)
31 PRK11357 frlA putative fructos 99.2 1.6E-08 3.5E-13 105.1 31.0 241 66-328 6-250 (445)
32 PRK11387 S-methylmethionine tr 99.2 2.7E-08 5.9E-13 104.1 31.9 239 66-328 12-261 (471)
33 TIGR00911 2A0308 L-type amino 99.2 7E-09 1.5E-13 109.4 27.3 246 66-329 40-291 (501)
34 PRK10238 aromatic amino acid t 99.2 4.4E-08 9.5E-13 102.0 31.6 357 66-451 10-385 (456)
35 PF13520 AA_permease_2: Amino 99.2 9.8E-09 2.1E-13 106.1 25.9 287 71-388 2-302 (426)
36 TIGR00908 2A0305 ethanolamine 99.2 5.8E-08 1.3E-12 100.9 31.6 239 66-326 5-244 (442)
37 PRK10580 proY putative proline 99.2 1.3E-07 2.7E-12 98.7 32.7 237 66-326 7-252 (457)
38 TIGR00906 2A0303 cationic amin 99.1 1.5E-07 3.2E-12 100.1 33.3 368 66-451 26-410 (557)
39 PRK10836 lysine transporter; P 99.1 5.2E-07 1.1E-11 94.9 34.2 240 66-327 13-259 (489)
40 TIGR00913 2A0310 amino acid pe 99.1 9.3E-07 2E-11 92.8 34.8 238 68-327 2-251 (478)
41 PF03845 Spore_permease: Spore 99.0 4.7E-08 1E-12 97.0 22.9 287 69-390 1-293 (320)
42 PRK10197 gamma-aminobutyrate t 99.0 5.1E-07 1.1E-11 93.8 31.0 344 80-451 4-367 (446)
43 COG1113 AnsP Gamma-aminobutyra 98.9 4.6E-07 9.9E-12 90.3 25.0 351 67-451 12-388 (462)
44 COG0531 PotE Amino acid transp 98.8 1.6E-05 3.4E-10 83.1 32.1 296 67-385 11-313 (466)
45 PRK15238 inner membrane transp 98.8 3.3E-05 7.1E-10 81.5 33.6 247 67-327 6-265 (496)
46 KOG3832 Predicted amino acid t 98.7 1.2E-07 2.5E-12 83.5 9.9 214 73-294 15-299 (319)
47 TIGR00907 2A0304 amino acid pe 98.7 0.00014 3E-09 76.5 33.9 244 67-322 11-266 (482)
48 COG0833 LysP Amino acid transp 98.5 0.00018 4E-09 73.6 29.6 357 66-451 42-427 (541)
49 TIGR03428 ureacarb_perm permea 98.5 0.00097 2.1E-08 70.0 36.4 251 66-326 11-266 (475)
50 TIGR03813 put_Glu_GABA_T putat 98.5 0.00023 5E-09 74.7 31.6 53 276-333 202-254 (474)
51 TIGR00910 2A0307_GadC glutamat 98.5 0.00024 5.2E-09 75.0 30.4 51 271-326 197-247 (507)
52 PF00324 AA_permease: Amino ac 98.4 3.4E-06 7.3E-11 88.6 14.5 243 80-336 7-263 (478)
53 COG3949 Uncharacterized membra 98.4 0.00013 2.7E-09 70.0 22.9 135 74-229 7-146 (349)
54 KOG1286 Amino acid transporter 98.3 0.00011 2.4E-09 77.3 20.7 367 67-451 29-422 (554)
55 PRK11375 allantoin permease; P 98.2 0.0042 9E-08 65.1 29.9 335 72-438 36-388 (484)
56 TIGR00800 ncs1 NCS1 nucleoside 98.1 0.0038 8.3E-08 64.8 28.4 246 72-337 23-275 (442)
57 KOG1289 Amino acid transporter 97.9 0.0075 1.6E-07 62.0 25.5 238 72-324 55-303 (550)
58 PRK09442 panF sodium/panthothe 97.9 0.04 8.6E-07 58.0 32.2 153 67-236 40-196 (483)
59 TIGR02358 thia_cytX probable h 97.9 0.032 6.9E-07 56.8 29.2 309 72-437 7-318 (386)
60 COG0591 PutP Na+/proline sympo 97.6 0.11 2.4E-06 54.7 29.9 149 68-233 38-190 (493)
61 TIGR02119 panF sodium/pantothe 97.6 0.14 3E-06 53.7 32.4 154 67-237 39-196 (471)
62 PF00474 SSF: Sodium:solute sy 97.5 0.014 3E-07 60.0 20.8 149 68-234 6-156 (406)
63 TIGR00813 sss transporter, SSS 97.4 0.11 2.4E-06 53.3 26.4 149 68-234 3-152 (407)
64 COG1457 CodB Purine-cytosine p 97.4 0.099 2.1E-06 53.3 24.3 267 138-449 85-358 (442)
65 COG1914 MntH Mn2+ and Fe2+ tra 97.2 0.33 7.1E-06 49.5 26.3 54 399-452 324-378 (416)
66 PRK11017 codB cytosine permeas 97.0 0.53 1.1E-05 48.3 27.2 53 98-154 39-91 (404)
67 PF02554 CstA: Carbon starvati 96.7 0.047 1E-06 53.8 14.1 102 71-176 53-155 (376)
68 TIGR00835 agcS amino acid carr 96.6 0.2 4.3E-06 51.2 18.2 81 68-152 45-135 (425)
69 PRK12488 acetate permease; Pro 96.4 1.7 3.7E-05 46.5 32.6 149 67-235 66-217 (549)
70 TIGR00796 livcs branched-chain 96.3 1.4 3E-05 44.5 30.6 71 77-155 2-75 (378)
71 COG1953 FUI1 Cytosine/uracil/t 96.2 1.8 4E-05 44.6 29.3 254 74-346 52-317 (497)
72 TIGR02711 symport_actP cation/ 96.1 2.4 5.2E-05 45.4 30.9 146 68-233 67-215 (549)
73 PF02133 Transp_cyt_pur: Perme 95.9 0.034 7.5E-07 57.7 9.2 49 134-183 71-119 (440)
74 COG1966 CstA Carbon starvation 95.8 0.57 1.2E-05 48.5 16.7 81 72-155 54-135 (575)
75 KOG2082 K+/Cl- cotransporter K 95.7 2.2 4.8E-05 45.8 21.0 167 71-241 116-292 (1075)
76 PRK15015 carbon starvation pro 95.6 0.19 4.2E-06 53.1 13.0 99 74-176 87-186 (701)
77 PF01566 Nramp: Natural resist 95.6 2.8 6.2E-05 42.1 21.8 70 103-177 14-84 (358)
78 COG0733 Na+-dependent transpor 95.6 3.1 6.7E-05 42.4 24.3 299 69-390 8-336 (439)
79 TIGR03648 Na_symport_lg probab 95.2 5.3 0.00011 42.8 32.3 148 67-233 31-180 (552)
80 PF05525 Branch_AA_trans: Bran 95.1 4.5 9.8E-05 41.5 25.0 330 70-449 3-353 (427)
81 PRK10484 putative transporter; 94.7 7.1 0.00015 41.5 32.0 82 68-154 38-121 (523)
82 PRK09395 actP acetate permease 93.8 11 0.00024 40.4 31.6 147 68-234 69-218 (551)
83 PF00209 SNF: Sodium:neurotran 93.7 11 0.00024 40.1 24.5 101 71-181 6-111 (523)
84 PRK15419 proline:sodium sympor 93.4 12 0.00026 39.6 33.2 76 68-147 40-121 (502)
85 PRK00701 manganese transport p 93.3 12 0.00025 38.9 26.3 18 134-151 94-111 (439)
86 KOG2466 Uridine permease/thiam 93.0 11 0.00023 38.8 17.9 265 67-346 53-331 (572)
87 TIGR02121 Na_Pro_sym sodium/pr 92.8 14 0.00031 38.8 32.8 80 67-147 35-117 (487)
88 PRK15433 branched-chain amino 92.1 16 0.00034 37.6 23.2 73 71-152 9-85 (439)
89 KOG2083 Na+/K+ symporter [Inor 91.4 0.6 1.3E-05 48.7 7.3 223 74-326 39-276 (643)
90 KOG1288 Amino acid transporter 89.9 14 0.0003 39.7 15.4 57 269-330 295-351 (945)
91 TIGR00796 livcs branched-chain 86.0 7.8 0.00017 39.2 10.9 46 133-179 254-299 (378)
92 PF01235 Na_Ala_symp: Sodium:a 83.7 56 0.0012 33.5 20.8 48 67-115 16-64 (416)
93 COG0814 SdaC Amino acid permea 77.5 40 0.00087 34.7 12.7 147 301-453 218-377 (415)
94 PF05525 Branch_AA_trans: Bran 76.4 23 0.00051 36.3 10.4 48 133-181 260-307 (427)
95 COG4147 DhlC Predicted symport 74.6 1.1E+02 0.0024 31.7 23.4 179 133-331 103-294 (529)
96 KOG3660 Sodium-neurotransmitte 71.1 1.5E+02 0.0033 32.2 15.4 104 71-184 39-147 (629)
97 PF02028 BCCT: BCCT family tra 70.7 1.4E+02 0.0031 31.3 25.3 96 135-240 163-261 (485)
98 TIGR01197 nramp NRAMP (natural 63.3 1.8E+02 0.0039 29.7 26.3 71 77-155 11-84 (390)
99 KOG4812 Golgi-associated prote 62.7 17 0.00036 33.7 5.2 67 409-479 162-243 (262)
100 PRK13183 psbN photosystem II r 60.4 13 0.00029 24.7 3.1 31 307-337 5-35 (46)
101 CHL00020 psbN photosystem II p 60.2 11 0.00024 24.7 2.7 30 308-337 3-32 (43)
102 COG1114 BrnQ Branched-chain am 55.5 1.4E+02 0.003 30.5 10.7 147 91-254 222-368 (431)
103 PF05656 DUF805: Protein of un 54.3 1.2E+02 0.0025 24.8 8.8 62 436-497 55-117 (120)
104 PHA02764 hypothetical protein; 53.8 41 0.00089 32.9 6.5 83 68-155 12-98 (399)
105 PF05805 L6_membrane: L6 membr 52.0 41 0.00089 30.4 5.9 65 423-487 43-118 (195)
106 COG4145 PanF Na+/panthothenate 50.7 2.8E+02 0.0061 28.0 25.7 143 69-227 40-185 (473)
107 PF02468 PsbN: Photosystem II 48.2 13 0.00028 24.5 1.6 29 309-337 4-32 (43)
108 PLN00151 potassium transporter 48.1 4.5E+02 0.0097 29.6 17.5 20 272-294 348-367 (852)
109 PF11085 YqhR: Conserved membr 46.7 31 0.00067 30.3 4.1 86 148-245 68-153 (173)
110 KOG2349 Na+:iodide/myo-inosito 38.0 5.5E+02 0.012 27.7 15.9 58 271-334 243-303 (585)
111 PRK09950 putative transporter; 37.8 5.2E+02 0.011 27.4 25.7 52 133-185 166-221 (506)
112 PRK15433 branched-chain amino 34.5 2.9E+02 0.0063 28.6 9.6 44 135-179 266-309 (439)
113 PRK09928 choline transport pro 32.4 7.2E+02 0.016 27.4 23.8 103 71-175 94-219 (679)
114 COG1115 AlsT Na+/alanine sympo 30.2 6.4E+02 0.014 26.1 22.5 58 66-124 59-120 (452)
115 KOG1289 Amino acid transporter 29.5 7.2E+02 0.016 26.5 14.0 44 135-179 326-369 (550)
116 KOG1291 Mn2+ and Fe2+ transpor 29.3 6.8E+02 0.015 26.1 15.5 37 399-435 356-394 (503)
117 PF11947 DUF3464: Protein of u 28.5 98 0.0021 26.8 4.3 30 71-100 62-91 (153)
118 TIGR00909 2A0306 amino acid tr 28.2 6.5E+02 0.014 25.6 11.9 46 135-181 265-310 (429)
119 PRK05415 hypothetical protein; 27.2 4.5E+02 0.0097 26.2 9.2 49 73-122 71-119 (341)
120 PF02028 BCCT: BCCT family tra 26.4 5.1E+02 0.011 27.3 10.0 121 102-229 343-464 (485)
121 PF05915 DUF872: Eukaryotic pr 25.8 3E+02 0.0066 22.6 6.6 67 70-139 39-112 (115)
122 PF06800 Sugar_transport: Suga 22.6 4.3E+02 0.0093 25.4 7.9 70 400-469 196-265 (269)
123 PHA02680 ORF090 IMV phosphoryl 21.9 1.9E+02 0.0041 22.3 4.2 61 270-337 13-74 (91)
124 cd08765 Cyt_b561_CYBRD1 Verteb 21.4 2.2E+02 0.0047 24.8 5.1 69 303-381 43-111 (153)
125 PRK10263 DNA translocase FtsK; 21.2 1.5E+03 0.032 27.3 14.7 22 310-331 25-46 (1355)
126 TIGR00945 tatC Twin arginine t 20.7 4.5E+02 0.0098 24.1 7.6 35 355-389 54-88 (215)
127 PLN02680 carbon-monoxide oxyge 20.6 7.1E+02 0.015 23.3 9.0 68 304-381 76-143 (232)
128 PF04193 PQ-loop: PQ loop repe 20.4 2.3E+02 0.0049 19.8 4.4 47 272-322 3-49 (61)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3.2e-57 Score=467.62 Aligned_cols=401 Identities=16% Similarity=0.216 Sum_probs=318.3
Q ss_pred cCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
-++++..++++|++|+++|+|+|++|+||+++||++|++++++++.++.||+++|.+++++ ++ ..+|+|++++++||
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~ 133 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP 133 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH
Confidence 3468899999999999999999999999999999999999999999999999999999885 34 55999999999999
Q ss_pred ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928 147 KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSM 226 (497)
Q Consensus 147 ~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~ 226 (497)
+ ++++..+.+...++|+|++|+++++|.++.+++.....+ .......++..+.+++.++++|+++ +|++++|+++|.
T Consensus 134 ~-g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~-~~~~~~~~r~~~~~i~~~i~lPLs~-~r~i~~L~~~S~ 210 (467)
T PTZ00206 134 W-GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPD-FLKQKSGNRLLTSLMWLCFMLPLVI-PRHIDSLRYVST 210 (467)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-hhhhccCcEEeeeehhhhHhhhccc-ccchHHHHHHHH
Confidence 6 666666677888899999999999999998875321111 0000011122233334455667777 999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCCCcc---cCCCCCCch-hhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCc
Q 010928 227 VGAITAVAYCTFIWALSINKGRSNGVS---YSPSQESKS-DMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPS 302 (497)
Q Consensus 227 ~~~~~~~~~~~~v~~~~i~~g~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~ 302 (497)
+++.++++..+.+++.+..++.+++.+ ..+.+.... ......+++.++|+++|||.||.+++++++|| |+|+
T Consensus 211 i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t 286 (467)
T PTZ00206 211 IAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRS 286 (467)
T ss_pred HHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccc
Confidence 999888877766666655554333221 111100000 11122468899999999999999999999999 7888
Q ss_pred cccchhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchH
Q 010928 303 CQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVF 382 (497)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~ 382 (497)
.+++.+++..++.+++++|..+|++||++||++++ +|++.|+ + +..+....+++++++++++++||++.+|+|
T Consensus 287 ~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~--~~Illn~---~--p~~~~~~~v~~~~~~~~v~~sypL~~~p~r 359 (467)
T PTZ00206 287 VGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVT--GSVLLMY---D--PVNEPAIMVGFVGVLVKLFVSYALLGMACR 359 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc--hHHHHhC---C--CCCCchhhHHHHHHHHHHHHhhhhhhhhHH
Confidence 88888999999999999999999999999999999 7999665 2 223456778899999999999999999999
Q ss_pred HHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHh---CCCCcchh
Q 010928 383 DNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIK---KPSRSGAM 458 (497)
Q Consensus 383 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~---~~~~~~~~ 458 (497)
+.+++.+..+ +++.+.|++...+..++++++++|+++||++.+++++||+++ .++|++|+++|++.. +++.+..+
T Consensus 360 ~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~ 438 (467)
T PTZ00206 360 NALYDVIGWD-ARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFY 438 (467)
T ss_pred HHHHHHhCCC-cccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHH
Confidence 9999876422 233355677666777777889999999999999999999999 999999999999842 12223345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010928 459 WWLNVGLGCLGTILSVMLVVAAAWNLA 485 (497)
Q Consensus 459 ~~~~~~~i~~g~~~~v~g~~~si~~i~ 485 (497)
|+.+++++++|++.++.||++|+++.+
T Consensus 439 ~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 439 YISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHhheEEecchhHhhHHh
Confidence 678999999999999999999999876
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-55 Score=440.11 Aligned_cols=405 Identities=36% Similarity=0.633 Sum_probs=353.0
Q ss_pred CCCCCCcccccccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhh---cCCC
Q 010928 55 LNPVDAWLPITESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAES---VPGT 131 (497)
Q Consensus 55 ~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~---~~~~ 131 (497)
.++.|++++.+++|++||+++.+|.+|.++|.|+|++|||++++||+.|++++++.++++.||..+|.+|.+. .+++
T Consensus 23 ~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~ 102 (437)
T KOG1303|consen 23 KSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK 102 (437)
T ss_pred ccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 3566777888888999999999999999999999999999999999999999999999999999999998765 3456
Q ss_pred ccccHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHH
Q 010928 132 RYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAI 211 (497)
Q Consensus 132 ~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l 211 (497)
|..+|+|+++++||++. +++........++|+|+.|++..+|++..+++..+.++. .++.+.|+++++++.+++
T Consensus 103 r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~~~~f~iif~~i~~~~ 176 (437)
T KOG1303|consen 103 RRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLDKQYFIIIFGLIVLPL 176 (437)
T ss_pred cCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----cccceehhhhHHHHHHHH
Confidence 77889999999999975 666666677777999999999999999999998775521 344688999999999999
Q ss_pred hhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhccCCCCC---cccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHH
Q 010928 212 AQILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNG---VSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVL 288 (497)
Q Consensus 212 ~~~l~~l~~l~~~s~~~~~~~~~~~~~v~~~~i~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~ 288 (497)
++ +|+++++++.|..+.++.+.+..+.+..++.+|...+ .++.. ..+ ... .++++|++.|+|.+|..+|
T Consensus 177 s~-lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~--~~~-~~~----~f~a~g~iaFaf~gH~v~p 248 (437)
T KOG1303|consen 177 SQ-LPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD--LGT-IPT----VFTALGIIAFAYGGHAVLP 248 (437)
T ss_pred HH-CCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc--CCC-Ccc----hhhhhhheeeeecCCeeee
Confidence 99 9999999999999999999888888888877764332 22221 111 111 1799999999999999999
Q ss_pred hHHhhCCCCCCCCccccchhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHH
Q 010928 289 EIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLI 368 (497)
Q Consensus 289 ~i~~~m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~ 368 (497)
+|+++| |+|.+ |+|++.+++.+++.+|..+++.||++|||+++ ++++.|+ ..+.|+...+++++.+
T Consensus 249 eIq~tM----k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~--~~il~s~------~~p~~~~~~ani~i~~ 314 (437)
T KOG1303|consen 249 EIQHTM----KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVP--DNILLSL------QPPTWLIALANILIVL 314 (437)
T ss_pred ehHhhc----CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccc--hhhhhcc------cCchhHHHHHHHHHHH
Confidence 999999 77766 67999999999999999999999999999999 6999887 2478999999999999
Q ss_pred HHhhhhhcchhchHHHHHHHHhhccCC--CCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHH
Q 010928 369 NSLSSFQIYAMPVFDNLEFQYVSKKKQ--RCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFM 445 (497)
Q Consensus 369 ~~~~sypl~~~p~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~ 445 (497)
|++.+|++...|..+.+|+....+.++ +.....|.+.|+.+++.+.++|+.+|+|+++++++||+.. ++++++|+++
T Consensus 315 h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~ 394 (437)
T KOG1303|consen 315 HLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLM 394 (437)
T ss_pred HHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999977644331 1345689999999999999999999999999999999999 9999999999
Q ss_pred HHHHhCCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 010928 446 YILIKKPSRSGAMWWLNVGL-GCLGTILSVMLVVAAAWNLADK 487 (497)
Q Consensus 446 ~l~~~~~~~~~~~~~~~~~~-i~~g~~~~v~g~~~si~~i~~~ 487 (497)
|++.+|+++...+|+.++.+ .++|+++++....+++++++.+
T Consensus 395 yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 395 YLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999988888999999999 7999999999999999998753
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-55 Score=429.40 Aligned_cols=388 Identities=18% Similarity=0.244 Sum_probs=328.4
Q ss_pred cCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhh---cCCCccccHHHHHHHh
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAES---VPGTRYSRYLHLAVVA 143 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~---~~~~~~~~y~~l~~~~ 143 (497)
++..|..+|..|+.|.++|+|+|++|+||+++||+.|.+..++++.++.||++.+++|+++ ..+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 4467889999999999999999999999999999999999999999999999999999764 1222346788887766
Q ss_pred c----------CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhh
Q 010928 144 F----------GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQ 213 (497)
Q Consensus 144 ~----------G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~ 213 (497)
+ |+ ++|.+..+.++..|+|.|++|++++++++.++.+... ...++.+.|+.+.....+++.+
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~-------~~~~s~~~~i~~~~~~~lll~~ 195 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS-------PGVLSVRLYILIQLPPLLLLNL 195 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC-------CCCccHHHHHHHHHHHHHHHHH
Confidence 4 44 3566677778888899999999999999999988322 1344557777766666677777
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhh
Q 010928 214 ILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGT 293 (497)
Q Consensus 214 ~l~~l~~l~~~s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~ 293 (497)
+|++|.|+.+|.++.++++...+++.+..+... + +.+.. . ...++.+++..+|+.+|||+++..+.|++++
T Consensus 196 -Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~-~-~~~~~-----~-~~~~~~~~~lf~GtaifafEGig~VLPlEn~ 266 (449)
T KOG1304|consen 196 -IRNLKILSPFSLFANVFILVGLAIIMYYLVQDL-P-PTSDL-----P-AVTGWSGLPLFFGTAIFAFEGIGMVLPLENS 266 (449)
T ss_pred -HHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcc-C-Ccccc-----c-cccchhhhHHHHHHHHHHhccceEEEehhhc
Confidence 999999999999999999988877766655332 2 22211 1 3445778999999999999999999999999
Q ss_pred CCCCCCCCcccc-chhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhh
Q 010928 294 LPSSRRNPSCQT-MWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLS 372 (497)
Q Consensus 294 m~~~~k~p~~~~-~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 372 (497)
| |+|+++. ..+++..+|.+++++|..+|++||++||++++ +.++.|+ |+ +|+...+++++++++++
T Consensus 267 M----k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~--~sITLNL------P~-~~l~~~Vkl~~ai~I~l 333 (449)
T KOG1304|consen 267 M----KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVK--GSITLNL------PQ-EILSQTVKLLLAIAIFL 333 (449)
T ss_pred c----cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccccc--ceEEecC------Cc-cHHHHHHHHHHHHHHHH
Confidence 9 6776542 22788899999999999999999999999999 7999888 56 89999999999999999
Q ss_pred hhhcchhchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHhC
Q 010928 373 SFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIKK 451 (497)
Q Consensus 373 sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~~ 451 (497)
+||++++|..+.+|+.+.++-++++.++....+|+.++++++++|.++||++.+++++||+++ .+.+++|+++++..+.
T Consensus 334 s~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~ 413 (449)
T KOG1304|consen 334 TYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFY 413 (449)
T ss_pred cCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhc
Confidence 999999999999999887665544456777899999999999999999999999999999999 9999999999999987
Q ss_pred CCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010928 452 PSR---SGAMWWLNVGLGCLGTILSVMLVVAAAWNL 484 (497)
Q Consensus 452 ~~~---~~~~~~~~~~~i~~g~~~~v~g~~~si~~i 484 (497)
++. .+++++.+.+++++|+++++.|||.|+.++
T Consensus 414 ~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 414 PEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred ccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 654 346778999999999999999999999874
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=3.9e-49 Score=405.42 Aligned_cols=393 Identities=18% Similarity=0.250 Sum_probs=312.8
Q ss_pred cCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhh----cC--CC--c--cccH
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAES----VP--GT--R--YSRY 136 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~----~~--~~--~--~~~y 136 (497)
.++++..++.+++++..+|.|+|+||+||+++||++|++.++++++++.||+++|.++..+ .+ +. + ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999986432 11 11 1 1368
Q ss_pred HHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCC
Q 010928 137 LHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILP 216 (497)
Q Consensus 137 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~ 216 (497)
.|+++..+||+|+++...+. ...+++.|+.|++..++.+..+ . ..++.+.|++++.++.+++.+ +|
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~-~v~l~~~~v~~li~~~~~~~~l----~--------~~~~~~~~~~i~~~v~~~~~~-i~ 188 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFN-CTFLLFGSVIQLIACASNIYYI----N--------DNLDKRTWTYIFGACCATTVF-IP 188 (473)
T ss_pred HHHHHHhcChhHHHHHHHHH-hhhhHHHHHHHHHHHhhhhhhh----C--------CCcCCCeEEeehHHHHHHHHH-cc
Confidence 99999999998777665544 4555888999999877766543 1 123457788888888888887 99
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCC
Q 010928 217 NLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPS 296 (497)
Q Consensus 217 ~l~~l~~~s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~ 296 (497)
++++++++|.+|+.++++..+.+++..+..+..++.+++ .+.++..++.++++++|+|++|..+|++++||
T Consensus 189 sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-------~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M-- 259 (473)
T PLN03074 189 SFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-------GPTKLVLYFTGATNILYTFGGHAVTVEIMHAM-- 259 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-------CchhHHHHHHHHHHHHHHhcccccHHHHHHhc--
Confidence 999999999999998766544444444444433333322 23455678888899999999999999999999
Q ss_pred CCCCCccccchhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhc
Q 010928 297 SRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQI 376 (497)
Q Consensus 297 ~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl 376 (497)
|+|++++ ++..+++..++.+|+.+|+.||++||++++++.+.+.++ +.+. ...+++++++++.+.+||+
T Consensus 260 --~~P~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~l------p~~~-~~~~~~~~~~i~~~~sy~l 328 (473)
T PLN03074 260 --WKPQKFK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLL------PRSG-WRDAAVILMLIHQFITFGF 328 (473)
T ss_pred --cChhccc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcC------CCch-HHHHHHHHHHHHHHHHHHH
Confidence 8898876 778889999999999999999999999876222455445 3333 3578999999999999999
Q ss_pred chhchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHhCCC--
Q 010928 377 YAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIKKPS-- 453 (497)
Q Consensus 377 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~~~~-- 453 (497)
++.|..+.+|+.+.. +..+..+.|.++|+.++++++++|..+|+|+.+++++||+++ .+++++|+++|++.++++
T Consensus 329 ~~~p~~~~~e~~~~~--~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~ 406 (473)
T PLN03074 329 ACTPLYFVWEKAIGV--HDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASA 406 (473)
T ss_pred HHhhHHHHHHHHhcc--cccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999886542 223345678999999999999999999999999999999999 999999999999865432
Q ss_pred -----------Ccchh--HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccccCC
Q 010928 454 -----------RSGAM--WWLNVGLGCL-GTILSVMLVVAAAWNLADKGLHANFFR 495 (497)
Q Consensus 454 -----------~~~~~--~~~~~~~i~~-g~~~~v~g~~~si~~i~~~~~~~~~~~ 495 (497)
.++++ .+.|++++++ |++..+.|+|+|+++++++.+.+++|.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~ 462 (473)
T PLN03074 407 RQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFA 462 (473)
T ss_pred hhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhh
Confidence 11222 2789899986 555578999999999999999988664
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.7e-53 Score=436.06 Aligned_cols=392 Identities=28% Similarity=0.465 Sum_probs=323.6
Q ss_pred CCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcC-CCccccHHHHHHHhcCc
Q 010928 68 RNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVP-GTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~-~~~~~~y~~l~~~~~G~ 146 (497)
||+|++++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.++|.|+++..+ +++..+|+|++++++|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999987532 34577999999999999
Q ss_pred ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928 147 KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSM 226 (497)
Q Consensus 147 ~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~ 226 (497)
++++++ .+.....++|.|++|+++++|.+.+++....++ ...++..|.++..++++|+++ +|+++++++.|.
T Consensus 81 ~~~~~~-~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~------~~~~~~~~~~i~~~i~~pls~-~~~l~~l~~~s~ 152 (409)
T PF01490_consen 81 KGKWFV-DICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD------LFISRYVWIIIFALIVLPLSF-LKNLKSLRYLSI 152 (409)
T ss_pred cccccc-cchheeccccccceeEEEeeeeeeccccccccc------ccccccccccccccccccccc-cchhhHHHHHhh
Confidence 855554 556677779999999999999999887765432 233456667777777788887 999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCcc-cc
Q 010928 227 VGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSC-QT 305 (497)
Q Consensus 227 ~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~-~~ 305 (497)
++++++++.+.+++.........++.+... +... ...++.+++.++|+++|||.||.++|++++|| |+|++ ++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~ 226 (409)
T PF01490_consen 153 LGLFSIFYFIVIVVIYIISYGPGEPSGVPS-PPVW-PFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKK 226 (409)
T ss_pred hhhhccceeeeeecceeeeeeccccccccc-cccc-ccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccc
Confidence 999998864332222222222122211110 1111 34556789999999999999999999999999 66776 56
Q ss_pred chhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchHHHH
Q 010928 306 MWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNL 385 (497)
Q Consensus 306 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~~~l 385 (497)
++++..+++.+++++|+.+|++||++||++++ +|++.|+ +..++...++++++.++++++||++.+|.|+.+
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~--~~il~n~------~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l 298 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDSVQ--GNILLNL------PNDDVLIIIARILLVISLLLSYPLQLFPARNSL 298 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeeeec--chhhhcC------CCcccccccccccchhhhhhccccccchhHhhh
Confidence 77999999999999999999999999999999 6999877 334478899999999999999999999999999
Q ss_pred HHHHhhc--------cCCCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHhCCCCcc
Q 010928 386 EFQYVSK--------KKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIKKPSRSG 456 (497)
Q Consensus 386 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~~~~~~~ 456 (497)
++.+.++ .+++.+++.|...|+.++++++++|..+||++.+++++|++++ .++|++|+++|++.+++++.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~ 378 (409)
T PF01490_consen 299 ENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNS 378 (409)
T ss_pred hhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccc
Confidence 9977642 2233456788999999999999999999999999999999999 999999999999998876544
Q ss_pred hhH-----HHHHHHHHHHHHHHHHHHHHHH
Q 010928 457 AMW-----WLNVGLGCLGTILSVMLVVAAA 481 (497)
Q Consensus 457 ~~~-----~~~~~~i~~g~~~~v~g~~~si 481 (497)
.++ ..++.++++|++.++.|+++++
T Consensus 379 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 379 FGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred cceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 433 3468889999999999999875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=376.59 Aligned_cols=400 Identities=21% Similarity=0.321 Sum_probs=324.6
Q ss_pred CCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcc
Q 010928 68 RNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPK 147 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~ 147 (497)
++.|..++++|++|+++|+|++++|+||++.|++.|++++.+++.++.++.+++.+++++ .+.+ +|+++++..+|+.
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~-~~~~--ty~~l~~~~~g~~ 80 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK-SGER--TYSSLGDLIFGKL 80 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh-cCCC--CHHHHHHHHcCCC
Confidence 456889999999999999999999999999999999999999999999999999999986 3433 9999999999996
Q ss_pred cchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccch-hHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928 148 LGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVE-WFLVFTCMAIAIAQILPNLNSVAKVSM 226 (497)
Q Consensus 148 ~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~l~l~~~l~~l~~l~~~s~ 226 (497)
|+........+..+| |++|+++++|.++.+.......+..- ..+.+++. |.+..+.+++|+++ .|+++++++.|.
T Consensus 81 -g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~-~~~~~~~~~ill~~~~~i~pLsl-~k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 81 -GKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGG-SHYLDRNFLILLVLLFIILPLSL-LKNLDSLKYTSA 156 (411)
T ss_pred -ceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccc-cccccceeEeehHHHHHHHHHHH-HHhhhhHHHHHH
Confidence 665555445555566 79999999999997665543221000 01222333 45556666678887 999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhccCC-CCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCcccc
Q 010928 227 VGAITAVAYCTFIWALSINKGR-SNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQT 305 (497)
Q Consensus 227 ~~~~~~~~~~~~v~~~~i~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~ 305 (497)
+++.+++++++++++..+.... .++..+.. + ....+++.+.++|+++|||.||.|+.++++|| |+|++++
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~ 227 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSYLV--P---NLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKK 227 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCccccc--C---Ccchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHH
Confidence 9999999988888777665332 11121110 0 12222688999999999999999999999999 8999999
Q ss_pred chhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchHHHH
Q 010928 306 MWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNL 385 (497)
Q Consensus 306 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~~~l 385 (497)
+.++...+...++++|..+|.+||+.||+.+. +|++.++++.....-..+....++..+.++++.++|+..+|+|..+
T Consensus 228 i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~--~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l 305 (411)
T KOG1305|consen 228 IQRVSNIAIILATLIYLLTGLFGYLTFGDLVK--GNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNL 305 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheecccch--HHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999999999999999999999999 7999766332211111124578999999999999999999999999
Q ss_pred HHHHhhccCC--CCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHhCCCCcchhHHHH
Q 010928 386 EFQYVSKKKQ--RCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIKKPSRSGAMWWLN 462 (497)
Q Consensus 386 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~~~~~~~~~~~~~ 462 (497)
+..+.+..++ ..++.++.++++.+.....+.|+++|+++.+++++||+++ .++|++|+++|++.+|. ++++....
T Consensus 306 ~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~ 383 (411)
T KOG1305|consen 306 DELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGA 383 (411)
T ss_pred HHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHH
Confidence 9877643322 2445677899999999999999999999999999999999 99999999999999875 45566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 010928 463 VGLGCLGTILSVMLVVAAAWNLADK 487 (497)
Q Consensus 463 ~~~i~~g~~~~v~g~~~si~~i~~~ 487 (497)
+...++|+..++.|++..+.++..+
T Consensus 384 ~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 384 LIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998865
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-42 Score=317.74 Aligned_cols=388 Identities=17% Similarity=0.243 Sum_probs=318.3
Q ss_pred CCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcC--C---CccccHHHHHHH
Q 010928 68 RNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVP--G---TRYSRYLHLAVV 142 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~--~---~~~~~y~~l~~~ 142 (497)
.+.+-++|..|..|++-|-=+++||+|....||+ ++..++.++.+++||+.+|++|..... | +.+++|.+++..
T Consensus 115 ~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~ 193 (524)
T KOG4303|consen 115 EKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADF 193 (524)
T ss_pred CccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHH
Confidence 4668899999999999999999999999999987 899999999999999999999986421 1 235799999999
Q ss_pred hcCcccc-hhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcch
Q 010928 143 AFGPKLG-KLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSV 221 (497)
Q Consensus 143 ~~G~~~g-~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l 221 (497)
.++++.| |++...+++-+ ..+|+.|.+..+|.++.-+.. -.....-|+++..+..+|.++ +|++|..
T Consensus 194 C~~P~lGgr~V~~AQliEL-lmTCIlYvVv~gdLl~~~fP~----------~svd~~sWm~i~~a~LLpc~F-Lk~Lk~V 261 (524)
T KOG4303|consen 194 CYKPGLGGRWVLAAQLIEL-LMTCILYVVVAGDLLQSCFPG----------LSVDKASWMMITSASLLPCSF-LKDLKIV 261 (524)
T ss_pred hcCCCcchheeeHHHHHHH-HHHHHhhhheechhhhccCCC----------CCccccchhhhhhHHHhhhHH-HHHHHHH
Confidence 9988755 88877665555 899999999999999854332 234467789888887666666 9999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCC
Q 010928 222 AKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNP 301 (497)
Q Consensus 222 ~~~s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p 301 (497)
+.+|++...+-++.-++++.+++..- .+-.|+. .. ...+..+++..+|+++|+|..|...|++...| ++|
T Consensus 262 S~lSf~ct~sH~viN~i~v~YCLs~~--~dW~wsk---v~-Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~p 331 (524)
T KOG4303|consen 262 SRLSFFCTISHLVINLIMVLYCLSFV--SDWSWSK---VT-FSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNP 331 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hhcccee---EE-EEEEcccCceEEEEEEEeeeceeecccccccc----CCh
Confidence 99999988887766555555554332 1112221 11 22334567889999999999999999999999 899
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhch
Q 010928 302 SCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPV 381 (497)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~ 381 (497)
++++ ..+.|+-+...++-..+|.+||++|++.++ ..|.+|+ +. .-+..++++++++..+.+||+-.+..
T Consensus 332 s~Fn--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~Tq--evItnnL------p~-qsfk~~VN~fLV~KALLSYPLPfyAA 400 (524)
T KOG4303|consen 332 SQFN--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQ--EVITNNL------PN-QSFKILVNLFLVVKALLSYPLPFYAA 400 (524)
T ss_pred hHhe--eeeehHHHHHHHHHHHHHHheeeeechhhH--HHHhcCC------Cc-cchhhhhhHHHHHHHHHcCCchHHHH
Confidence 9987 678899999999999999999999999999 4888777 22 23677899999999999999999999
Q ss_pred HHHHHHHHhhccCCC-CC---------cchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHh
Q 010928 382 FDNLEFQYVSKKKQR-CP---------GWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIK 450 (497)
Q Consensus 382 ~~~l~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~ 450 (497)
.+.+++.++...++. .+ +-+.+..|..+++.+.++|+.+|.|..+++++|+++| .++|+.|++||++++
T Consensus 401 velLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik 480 (524)
T KOG4303|consen 401 VELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIK 480 (524)
T ss_pred HHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHH
Confidence 999999887544331 11 2234678899999999999999999999999999999 999999999999998
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010928 451 KPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADKGL 489 (497)
Q Consensus 451 ~~~~~~~~~~~~~~~i~~g~~~~v~g~~~si~~i~~~~~ 489 (497)
.+.....+..++..++++|..+++.|.|-|..++++...
T Consensus 481 ~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~ 519 (524)
T KOG4303|consen 481 EKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAIN 519 (524)
T ss_pred HHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHh
Confidence 766666677889999999999999999999999998743
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-32 Score=275.09 Aligned_cols=394 Identities=18% Similarity=0.196 Sum_probs=283.8
Q ss_pred cCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
+.+.+..++++++.++++|+|+|++|++++..|++++++++++.+.++++|.+++.|+..+.++. +.+|.+++++.+||
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~G~ 84 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG-KASITSLVEDYLGK 84 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccHHHHHHHHhCc
Confidence 34567889999999999999999999999999999999999999999999999999999875442 25999999999999
Q ss_pred ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928 147 KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSM 226 (497)
Q Consensus 147 ~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~ 226 (497)
+ ++++..+.+...+++.+++|.+..+|.+++.++...+.+ ...+..+.+++..+..+++. .++...++..+.
T Consensus 85 ~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~------~~~r~~~~lif~~~~~~l~~-~~~~~~lk~ts~ 156 (415)
T COG0814 85 K-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN------PLPRKLGSLIFALVLAFLSW-LGTLAVLKITSL 156 (415)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC------CcchHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 8 555556678888899999999999999999988754331 13345555666666666666 999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccc
Q 010928 227 VGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTM 306 (497)
Q Consensus 227 ~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~ 306 (497)
+....+.++++.+.+...... .......+ .. ....+.....++|+++|||+||+++|++.+|| |++++++.
T Consensus 157 l~~~~v~~~~~l~~~~~~~~~-~~~l~~~~--~~--~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~ 227 (415)
T COG0814 157 LVFGKVIYLVLLVVYLIPHWN-PANLFALP--SA--SQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAV 227 (415)
T ss_pred HHHHHHHHHHHHHHHHhcccC-HHHHhccc--cc--chhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHH
Confidence 999888877766655443221 00010000 00 13566788999999999999999999999999 55655567
Q ss_pred hhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCC-------CCchHHHHHHHHHHHHHHhhhhhcchh
Q 010928 307 WKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGH-------NTSKHVMGTIYLLVLINSLSSFQIYAM 379 (497)
Q Consensus 307 ~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~sypl~~~ 379 (497)
+|+...+..+..++|..++.++|..+|+.+. +|++.+..|.... ....+.....++...+++.++|--...
T Consensus 228 ~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~--~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~l 305 (415)
T COG0814 228 RKAILIGSLIALVLYILVGFFVFGCFGSLVF--GNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYL 305 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccH--HHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchh
Confidence 7999999999999999999999999999999 6888665221000 111223344455555555555444444
Q ss_pred chHHHHHHHHhhcc--CCCCCcch--hhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHhCCCC
Q 010928 380 PVFDNLEFQYVSKK--KQRCPGWV--RAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIKKPSR 454 (497)
Q Consensus 380 p~~~~l~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~~~~~ 454 (497)
..++.+++.+...+ +++...+. ..............++...|..+.++..+|+... .+.++.|...+.+....++
T Consensus 306 g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~ 385 (415)
T COG0814 306 GLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKV 385 (415)
T ss_pred hHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceee
Confidence 44555555443211 11111111 1233344445666677778888888888888888 8888888888776654433
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 010928 455 SGAMWWLNVGLGCLGTILSVMLVVAA 480 (497)
Q Consensus 455 ~~~~~~~~~~~i~~g~~~~v~g~~~s 480 (497)
.+.++...++++++|++.++...+++
T Consensus 386 ~~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 386 YGGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 33222467888888888887766654
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=3.4e-25 Score=221.31 Aligned_cols=380 Identities=12% Similarity=0.045 Sum_probs=256.3
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
++++++.+++++.+..|.+|+|+|++|.+.++.|+.++++++++++..+.||..+++|...+.++ ..++..++++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~--g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI--GSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcC
Confidence 45678999999999999999999999999999999999999999999999999999998776544 5699999999999
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhh-cCCCCcchhHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQ-ILPNLNSVAKV 224 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~-~l~~l~~l~~~ 224 (497)
|+ ++++..+...+..++.+++|+...++.+++.++. .+. .++...-.++++++.-.+.. -.|..+++...
T Consensus 85 ~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~-------~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~ 155 (414)
T PRK10483 85 KG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSL-------NVPARAAGFGFALLVAFVVWLSTKAVSRMTAI 155 (414)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCC-------CCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 97 7777777777778999999999999999988765 221 11112222333333222221 02333333333
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccc
Q 010928 225 SMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQ 304 (497)
Q Consensus 225 s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~ 304 (497)
-+.+.+.++...+ .....+...+.....+ . . .+..+...+.++|++++||+.|+++|++.+.+++ ++ +
T Consensus 156 l~~~~i~~f~~~~---~~l~~~i~~~~L~~~~--~-~-~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~---d~--~ 223 (414)
T PRK10483 156 VLGAKVITFFLTF---GSLLGHVQPATLFNVA--E-S-NASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGK---DP--K 223 (414)
T ss_pred HHHHHHHHHHHHH---HHHHhhcCHHHHhccc--c-c-cchhHHHHHHHHHHHHhhccCCCcchHHHHHhCc---CH--H
Confidence 3333333332221 1111111111110000 0 1 2233456789999999999999999999999952 23 2
Q ss_pred cchhHHHHHHHHHHHHHhhhhheeecccCCcc------CCCcc---hhhhcccccCCCCchHHHHHHHHHHHHHHhhhhh
Q 010928 305 TMWKGTIISYLLIAMCLFPLTITGFWAYGNKV------PVNGG---LLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQ 375 (497)
Q Consensus 305 ~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~------~~~~~---il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~syp 375 (497)
+.+|++.++..+..++|++.=......-+.+. +. +| .+..+.+. ....+...++.++..+++.+||-
T Consensus 224 kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~-~ni~~L~~~l~~~---~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 224 TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKG-GNIDVLVQALSGV---LNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC-CChHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHH
Confidence 55699999999999999963222222222111 10 12 22333221 22345667788999999999999
Q ss_pred cchhchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccc-hhHHHHhhhhhhhhhHhhhhhHHHHHHhCC-C
Q 010928 376 IYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPF-LGSLAPLIGGIALPLTYVYPCFMYILIKKP-S 453 (497)
Q Consensus 376 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~-~~~il~l~Ga~~~~l~filP~l~~l~~~~~-~ 453 (497)
-.....+|.+.+.+..+++ ...|.....+..+++.++|.+.|+ |-..+++.|..+..+..++|+++.++.||+ .
T Consensus 300 Gv~LGL~d~l~D~~k~~~~----~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~ 375 (414)
T PRK10483 300 GVTLGLFDYLADLFGFDDS----AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFG 375 (414)
T ss_pred HHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999997764322 123444455677999999999998 899999999774488899999999999875 2
Q ss_pred Ccch----hHHHHHHHHHHHHHHHHHH
Q 010928 454 RSGA----MWWLNVGLGCLGTILSVML 476 (497)
Q Consensus 454 ~~~~----~~~~~~~~i~~g~~~~v~g 476 (497)
.... .+......+++|++..+..
T Consensus 376 ~~~y~v~Gg~~~l~~~~~~g~~~i~~~ 402 (414)
T PRK10483 376 SPKFRVWGGKPMIVLILLFGVGNALVH 402 (414)
T ss_pred CCCceecCCHHHHHHHHHHHHHHHHHH
Confidence 2111 1122345555555554433
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=3.9e-24 Score=215.85 Aligned_cols=372 Identities=21% Similarity=0.220 Sum_probs=253.3
Q ss_pred CCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCccc
Q 010928 69 NGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKL 148 (497)
Q Consensus 69 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~ 148 (497)
+.+.+++++.+..+.+|+|+|+||++.+..|+.++++++++++.++++|..++.|...+.++ ..+|.+++++.+||+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~--~~~~~~~a~~~lG~~- 78 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE--GSSLTSMAEKYLGKK- 78 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhChH-
Confidence 45788999999999999999999999999999999999999999999999999998876444 669999999999997
Q ss_pred chhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHHH
Q 010928 149 GKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVG 228 (497)
Q Consensus 149 g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~~ 228 (497)
++++..+......++.+++|....++.+++.+....+. ..+.+.-..++.++...+.. ..-+...+.+.+-
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~-------~~~~~~~~~~f~~i~~~iv~--~g~~~v~~~n~~l 149 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT-------DLSPWLSSLLFTIIFGGIVY--FGTKAVDRINRVL 149 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-------CCcHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence 55555556666779999999999999999988765432 11112212222222211111 1223333333222
Q ss_pred HHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccchh
Q 010928 229 AITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWK 308 (497)
Q Consensus 229 ~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~~ 308 (497)
+...+...+..+...+.+-..+..... .. ...++...+.++|++++||..|+++|++.+.++++ + ++.+|
T Consensus 150 v~~~i~~~~~l~~~~~p~~~~~~L~~~----~~-~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~--~k~~~ 219 (394)
T PF03222_consen 150 VFGMIISFIILVVYLIPHWNPSNLLDA----PP-SPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---P--KKIRK 219 (394)
T ss_pred HHHHHHHHHHHHHHHhhhcCHHHhhcc----cc-ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---H--HHHHH
Confidence 222222111111111111111111110 11 34556788899999999999999999999999532 2 34459
Q ss_pred HHHHHHHHHHHHHhhh--hheeec---------ccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcc
Q 010928 309 GTIISYLLIAMCLFPL--TITGFW---------AYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIY 377 (497)
Q Consensus 309 ~~~~a~~~~~~~Y~~~--g~~gy~---------~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~ 377 (497)
++.++..+..++|++. .++|-. ..+++.. .+...+.+. ..+.+...++.++..+++.+||--.
T Consensus 220 ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~---~~~~~~~~~---~~s~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 220 AIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVS---ALVSALANV---SGSPWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChH---HHHHHHHhh---cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 333311 1111111 222222222 2345677889999999999999999
Q ss_pred hhchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccc-hhHHHHhhhhhhh-hhHhhhhhHHHHHHhCCCCc
Q 010928 378 AMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPF-LGSLAPLIGGIAL-PLTYVYPCFMYILIKKPSRS 455 (497)
Q Consensus 378 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~-~~~il~l~Ga~~~-~l~filP~l~~l~~~~~~~~ 455 (497)
....+|.+.+.+.. +++ ...|.....+..+++.++|...|+ |-..+++.| ... .+..++|.++.+|.+++++.
T Consensus 294 ~lgl~d~l~d~~k~-~~~---~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~ 368 (394)
T PF03222_consen 294 YLGLFDFLADLFKL-KNN---SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPK 368 (394)
T ss_pred HHHHHHHHHHHHcC-Ccc---ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCC
Confidence 99999999997753 222 234555566677889999999998 889999999 777 99999999999999876543
Q ss_pred ch-----hHHHHHHHHHHHHHHH
Q 010928 456 GA-----MWWLNVGLGCLGTILS 473 (497)
Q Consensus 456 ~~-----~~~~~~~~i~~g~~~~ 473 (497)
.. .+.....++++|++..
T Consensus 369 ~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 369 QPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred CCeEEeCcHHHHHHHHHHHHHHH
Confidence 21 2344455555555543
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=7.6e-24 Score=212.64 Aligned_cols=373 Identities=20% Similarity=0.169 Sum_probs=256.3
Q ss_pred CchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccc
Q 010928 70 GNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLG 149 (497)
Q Consensus 70 ~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g 149 (497)
++.+++++.+..|.+|+|+|+||.+.+..|+.++++++++++.+..|+.+++.|...+.++ ..++.+++++.+||+ +
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~-g 79 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRY-G 79 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChH-H
Confidence 3678999999999999999999999999999999999999999999999999997654333 569999999999998 5
Q ss_pred hhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHH---H
Q 010928 150 KLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVS---M 226 (497)
Q Consensus 150 ~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s---~ 226 (497)
+++..+......+..+++|....++.+.+.+..+.+. .++...+.+.+.++..... ....+...+++ .
T Consensus 80 ~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-------~i~~~~~~l~F~~~~~~iv--~~g~~~v~~~n~~L~ 150 (403)
T PRK15132 80 QWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-------SMSPTAGVLLFTLVAGGVV--CVGTSSVDLFNRFLF 150 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-------CCChHHHHHHHHHHHHHHH--hccHHHHHHHHHHHH
Confidence 5555666677779999999999999999887764432 1222334444443322221 12334444333 2
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccc
Q 010928 227 VGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTM 306 (497)
Q Consensus 227 ~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~ 306 (497)
.+.+..+. +.+ ...+.+-..++....+ .+....+.++|++++||+.|+++|++.+.+++ ++ ++.
T Consensus 151 ~~~ii~~~--~~~-~~l~p~~~~~~L~~~~--------~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~---~~--~~~ 214 (403)
T PRK15132 151 SAKIIFLV--VML-ALMMPHIHKVNLLTLP--------LQQGLALSAIPVIFTSFGFHGSVPSIVSYMGG---NI--RKL 214 (403)
T ss_pred HHHHHHHH--HHH-HHHHHhcCHHHHhcCC--------ccccHHHHHHHHHHHHhhCCcccHHHHHHhCc---CH--HHH
Confidence 22222221 111 1111110111111000 01113789999999999999999999999942 22 445
Q ss_pred hhHHHHHHHHHHHHHhhhhheeecccCCcc-----CCCc---chhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcch
Q 010928 307 WKGTIISYLLIAMCLFPLTITGFWAYGNKV-----PVNG---GLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYA 378 (497)
Q Consensus 307 ~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~-----~~~~---~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~ 378 (497)
+|++.++..+..++|++.=......-+.+. +.+. +++..+.+. ....+...++.++..+++.+||--..
T Consensus 215 ~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~fa~~Ai~TSFlGv~ 291 (403)
T PRK15132 215 RWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREV---VASPHVELAVHLFADLALATSFLGVA 291 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHH---ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999855433333323221 1001 344444332 23356778899999999999999999
Q ss_pred hchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccc-hhHHHHhhhhhhhhhHhhhhhHHHHHHhCCC---C
Q 010928 379 MPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPF-LGSLAPLIGGIALPLTYVYPCFMYILIKKPS---R 454 (497)
Q Consensus 379 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~-~~~il~l~Ga~~~~l~filP~l~~l~~~~~~---~ 454 (497)
...+|.+.+.+..+++ ...|.....+..++++++|...|+ |...+++.|.....+.+++|.++.+|.++++ +
T Consensus 292 lgl~d~l~d~~~~~~~----~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~~~~ 367 (403)
T PRK15132 292 LGLFDYLADLFQRRNT----VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNPQAG 367 (403)
T ss_pred HHHHHHHHHHHccCcc----ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999997753222 123566667788999999999998 8999999997544999999999999998654 1
Q ss_pred cch--hHHHHHHHHHHHHHHHHHHH
Q 010928 455 SGA--MWWLNVGLGCLGTILSVMLV 477 (497)
Q Consensus 455 ~~~--~~~~~~~~i~~g~~~~v~g~ 477 (497)
.+. .+...++.+++|++..+.-.
T Consensus 368 y~v~gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 368 YRVKGGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHH
Confidence 111 23556777777777665443
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=5.6e-24 Score=212.31 Aligned_cols=380 Identities=14% Similarity=0.086 Sum_probs=253.9
Q ss_pred CCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcc
Q 010928 68 RNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPK 147 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~ 147 (497)
+|.+.+.+++.+..|++|+|+|++|.+.++.|+.++++++++++..+.||..++.|...+.++ ..++..++|+.+||+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~--g~~l~tma~~~LG~~ 84 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV--GSSFNTITKDLIGNT 84 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcChH
Confidence 345788899999999999999999999999999999999999999999999999999876544 669999999999997
Q ss_pred cchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhh-cCCCCcchhHHHH
Q 010928 148 LGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQ-ILPNLNSVAKVSM 226 (497)
Q Consensus 148 ~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~-~l~~l~~l~~~s~ 226 (497)
++++..+...+..++.+++|+...++.+++.++...+. ..+.+.-.+++..+...+.. -.|..+++...-+
T Consensus 85 -g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~-------~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~ 156 (415)
T PRK09664 85 -WNIISGITVAFVLYILTYAYISANGAIISETISMNLGY-------HANPRIVGICTAIFVASVLWISSLAASRITSLFL 156 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC-------CCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 77777777777779999999999999999887642211 11112222333332222211 0223333333333
Q ss_pred HHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccc
Q 010928 227 VGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTM 306 (497)
Q Consensus 227 ~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~ 306 (497)
.+.+.++...+ .....+-..+.....+. ... ....+.....++|++++||+.|+++|++.+.++ +++ ++.
T Consensus 157 ~~~ii~f~~~~---~~l~~~i~~~~L~~~~~-~~~-~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~--~~~ 226 (415)
T PRK09664 157 GLKIISFVIVF---GSFFFQVDYSILRDATS-TTA-GTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRK--DKL 226 (415)
T ss_pred HHHHHHHHHHH---HHHhhcccHHHHhcCcc-ccc-cchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccH--HHH
Confidence 33333222111 11111111111110000 000 011134577899999999999999999999994 233 333
Q ss_pred hhHHHHHHHHHHHHHhhh--hheeec---------ccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhh
Q 010928 307 WKGTIISYLLIAMCLFPL--TITGFW---------AYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQ 375 (497)
Q Consensus 307 ~~~~~~a~~~~~~~Y~~~--g~~gy~---------~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~syp 375 (497)
+|++..+..+..++|++. +++|-. ..|++.. .++.++. +.....+...++.++..+++.+||-
T Consensus 227 ~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~---~l~~s~~---~~~~~~~i~~~~~~Fa~~Ai~TSFl 300 (415)
T PRK09664 227 IKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVD---SLVKSFL---GTKQHGIIEFCLLVFSNLAVASSFF 300 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCch---HHHHHHH---hhccChHHHHHHHHHHHHHHHHHHH
Confidence 488888888888888633 333321 1222222 2222221 1123457788899999999999999
Q ss_pred cchhchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccc-hhHHHHhhhhhhhhhHhhhhhHHHHHHhCC-C
Q 010928 376 IYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPF-LGSLAPLIGGIALPLTYVYPCFMYILIKKP-S 453 (497)
Q Consensus 376 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~-~~~il~l~Ga~~~~l~filP~l~~l~~~~~-~ 453 (497)
-.....+|.+.+.+..++. + ..|.....+..+++.++|.+.|+ |-..+++.|..+..+..++|+++-+|.||+ .
T Consensus 301 Gv~LGL~D~l~D~~~~~~~-~---~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk~~~ 376 (415)
T PRK09664 301 GVTLGLFDYLADLFKIDNS-H---GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFP 376 (415)
T ss_pred HHHHHHHHHHHHHhCCCCc-c---ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999997753322 1 24555556677999999999998 899999999864488999999999999875 2
Q ss_pred Ccch----hHHHHHHHHHHHHHHHHHHH
Q 010928 454 RSGA----MWWLNVGLGCLGTILSVMLV 477 (497)
Q Consensus 454 ~~~~----~~~~~~~~i~~g~~~~v~g~ 477 (497)
.... .+..-.+.+++|++..+.-.
T Consensus 377 ~~~y~v~GG~~~l~~~~~~g~~ii~~~~ 404 (415)
T PRK09664 377 NQMFTVWGGNLIPAIVILFGITVILCWF 404 (415)
T ss_pred CCCceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 2111 22445556666666654433
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.92 E-value=5e-23 Score=209.32 Aligned_cols=348 Identities=15% Similarity=0.127 Sum_probs=245.5
Q ss_pred HHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchhhhh
Q 010928 75 AVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAI 154 (497)
Q Consensus 75 a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~ 154 (497)
++..++++++|+|++++|.++++.|+.++++.+++.++++.++...+.++..+.|+ ..++.+.+++.+||+++... .
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~--~~~~~~~~~~~~G~~~g~~~-~ 78 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG--GASFNTIAKDLLGKTGNIIA-G 78 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhCHHHHHHH-H
Confidence 34567899999999999999999999999999999999999999999999876655 45999999999999755554 4
Q ss_pred hhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH
Q 010928 155 FPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVA 234 (497)
Q Consensus 155 ~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~~~~~~~~ 234 (497)
......++..+++|.+..++.+..+++..... ..+...+.+++.++...+ . .+..+...+++.+.+...+.
T Consensus 79 ~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~v~~~l-~-~~G~~~~~~v~~i~~~~~l~ 149 (381)
T TIGR00837 79 LSLLFVLYILTYAYISGGGSILSRLIGEYFGF-------PWSARAIVLIFTVLFGSF-V-WLSTSAVDRITRVLIFGKII 149 (381)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC-------CccHHHHHHHHHHHHHHH-H-HhchhHHHHHHHHHHHHHHH
Confidence 45566669999999999999998887653322 111222222222222222 2 45778888888776666555
Q ss_pred HHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccchhHHHHHH
Q 010928 235 YCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISY 314 (497)
Q Consensus 235 ~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~~~~~~a~ 314 (497)
..++.++..+.+...++ ..+... ....+.++..++++..++|.+|.+++++.+|+ +++ ++++.|++.++.
T Consensus 150 ~l~~~ii~~~~~~~~~~--~~~~~~---~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~ 219 (381)
T TIGR00837 150 AFALVFSGLLPHVKGDL--LLDVAL---DTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGS 219 (381)
T ss_pred HHHHHHHHHHhhccHHH--HhcCcc---ccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHH
Confidence 44433333322211111 111100 11234578899999999999999999999999 545 566779999999
Q ss_pred HHHHHHHhhhhheeecccCCccCC------C--cchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchHHHHH
Q 010928 315 LLIAMCLFPLTITGFWAYGNKVPV------N--GGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLE 386 (497)
Q Consensus 315 ~~~~~~Y~~~g~~gy~~fG~~~~~------~--~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~~~l~ 386 (497)
.+++++|+++........+.+.-. + ++..+.+.+. ....+...+..++..+++.+++.-.....+|.+.
T Consensus 220 ~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~ 296 (381)
T TIGR00837 220 AIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGV---LKSSAIELALELFSNFALASSFLGVTLGLFDYLA 296 (381)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876655555433210 0 0111122111 1233567788899999999999999999999988
Q ss_pred HHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccchh-HHHHhhhhhhh-hhHhhhhhHHHHHHhCC
Q 010928 387 FQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLG-SLAPLIGGIAL-PLTYVYPCFMYILIKKP 452 (497)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~-~il~l~Ga~~~-~l~filP~l~~l~~~~~ 452 (497)
+.+.+. +++ .+|.....+..+++.++|.+.|+.. ..+++.| +.+ .+.+++|++++++.||+
T Consensus 297 ~~~~~~-~~~---~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 297 DLFKFD-DSK---KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred HHhCCC-ccc---CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 866542 221 2245555666788999999999855 8999999 777 99999999999998765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.89 E-value=2.2e-20 Score=186.52 Aligned_cols=391 Identities=13% Similarity=0.106 Sum_probs=249.5
Q ss_pred HHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchhhh
Q 010928 74 YAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLA 153 (497)
Q Consensus 74 ~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~ 153 (497)
.-...+..+.+|+|+|+||-.....|+.++++++++++.+++++.+.+.|.....+ ++..++.+++++.|||+|+.+..
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~-~~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS-NPSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCCHHHHHHHHcChhHHHHHH
Confidence 34489999999999999999999999999999999999999999999999765431 23569999999999998666655
Q ss_pred hhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHH---HHHHH
Q 010928 154 IFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVS---MVGAI 230 (497)
Q Consensus 154 ~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s---~~~~~ 230 (497)
. ..++..+..+.+|...+.+.+.+.+.+..+- ...++....++++++..... ...-+..-+++ ....+
T Consensus 102 i-lYff~ly~ll~aY~~~itn~l~sfl~~ql~~------~~~~r~l~slifv~~l~~iv--~~G~~~v~kv~~~Lv~~~i 172 (443)
T PRK13629 102 F-LYFFAICPLLWIYGVTITNTFMTFWENQLGF------APLNRGFVALFLLLLMAFVI--WFGKDLMVKVMSYLVWPFI 172 (443)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc------CCccHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHH
Confidence 4 4555558999999988888888765544321 01122222222222221111 22334443333 22223
Q ss_pred HHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCC---CCc--ccc
Q 010928 231 TAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRR---NPS--CQT 305 (497)
Q Consensus 231 ~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k---~p~--~~~ 305 (497)
.++....+..+-........+.+.+...... ..........++|++++||..|+++|++...+|+.-+ +++ .++
T Consensus 173 ~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~-~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 173 ASLVLISLSLIPYWNSAVIDQVDLGSLSLTG-HDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred HHHHHHHHHHHHHcCHHHHhcCccccccccc-cccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 3222222111111000001111110000000 0011245788999999999999999999999644311 223 577
Q ss_pred chhHHHHHHHHHHHHHhhhhheeecccCCcc------CCCcchhhhcccccCC-CCc-----hHHHHHHHHHHHHHHhhh
Q 010928 306 MWKGTIISYLLIAMCLFPLTITGFWAYGNKV------PVNGGLLSALSQVHGH-NTS-----KHVMGTIYLLVLINSLSS 373 (497)
Q Consensus 306 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~------~~~~~il~~~~~~~~~-~~~-----~~~~~i~~~~~~~~~~~s 373 (497)
.+|++..+..+..++|+..-+.....-+++. + +.+++..+.|..+. ... .+...+..+...+++.+|
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q-n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TS 330 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ-NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKS 330 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHH
Confidence 7899999999999999977666555555432 2 13555555442211 111 346777888888899999
Q ss_pred hhcchhchHHHHHHHHhh----ccCCCCC-cchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHH
Q 010928 374 FQIYAMPVFDNLEFQYVS----KKKQRCP-GWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYI 447 (497)
Q Consensus 374 ypl~~~p~~~~l~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l 447 (497)
|--....++|.+.....+ .++++.+ +..+.....++.+.++.+|..-|++-.+++-+|+--. .+.|++|...-+
T Consensus 331 FlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~ 410 (443)
T PRK13629 331 FFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIR 410 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999999999999987732 1122122 2334556667778889999999998888886666666 999999998877
Q ss_pred HHhCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 010928 448 LIKKPSRSGAMWWLNVGLGCLGTILSVMLV 477 (497)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~ 477 (497)
|.-.-++.+. +..++++++.|++......
T Consensus 411 kvp~l~~yr~-~~~n~fv~~~Gl~~i~~~~ 439 (443)
T PRK13629 411 KAPSLAKYRG-RLDNVFVTVIGLLTILNIV 439 (443)
T ss_pred ccHHHHHhCC-CchhHHHHHHHHHHHHHHH
Confidence 6633222221 2357888888877654433
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.84 E-value=3.5e-19 Score=179.51 Aligned_cols=378 Identities=11% Similarity=0.086 Sum_probs=247.3
Q ss_pred HHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchhh
Q 010928 73 FYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLL 152 (497)
Q Consensus 73 ~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~ 152 (497)
..-.+.+.++++|+|+|++|...++.||+..++..++...+++++.+++.|.....+ .+..++.|++++.|||++|++.
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~-~p~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK-NPCEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHcCHHHHHHH
Confidence 356789999999999999999999999999999999999999999999998744322 1245999999999999988887
Q ss_pred hhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHH-HHHHHHHhhcCCCCcchhHHHHHHHHH
Q 010928 153 AIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVF-TCMAIAIAQILPNLNSVAKVSMVGAIT 231 (497)
Q Consensus 153 ~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~l~l~~~l~~l~~l~~~s~~~~~~ 231 (497)
.....+.. +..+.+|....++.+.+.+......+ . ...+...+ .++++.... ....+.+.+++.+-+..
T Consensus 85 ~~lY~~~~-~~i~~aY~~~~~~~~~~fl~~~~~~~-------~-p~~~i~~lilv~il~~iv-~~G~~~i~r~~~il~~~ 154 (397)
T TIGR00814 85 TLLYFFAI-YPILLIYSVAITNDSASFLVNQLGTA-------P-PLRGLLSLALILILVAIM-SFGEKLLFKIMGPLVFP 154 (397)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-------C-cHHHHHHHHHHHHHHHHH-HhcHHHHHHHHHHHHHH
Confidence 77654444 88899999999999888776644321 0 12222222 111112222 44677777776555543
Q ss_pred HHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCc--cccchhH
Q 010928 232 AVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPS--CQTMWKG 309 (497)
Q Consensus 232 ~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~--~~~~~~~ 309 (497)
.+...+......+.+-..++....| . ....+.++..++++.++||.+|++++++..+.|++.++|+ .++.+|+
T Consensus 155 ~ii~l~~l~~~lip~~~~~~L~~~p--~---~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~ 229 (397)
T TIGR00814 155 LVLILVLLSLYLIPHWNGANLTTFP--S---FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRI 229 (397)
T ss_pred HHHHHHHHHHHHHHHcCHHHHhcCC--c---ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHH
Confidence 3333333323322221111221111 1 1123567899999999999999999999844422113222 5666799
Q ss_pred HHHHHHHHHHHHhhhhheeecccCCcc----CCC-cchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchHHH
Q 010928 310 TIISYLLIAMCLFPLTITGFWAYGNKV----PVN-GGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDN 384 (497)
Q Consensus 310 ~~~a~~~~~~~Y~~~g~~gy~~fG~~~----~~~-~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~~~ 384 (497)
+..+..+..++|+..-+......+.+. ..+ -+.+..+.|.. ...+...+..+...+++.+||--....++|.
T Consensus 230 i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~---~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~ 306 (397)
T TIGR00814 230 MKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHF---NAAWISYAGPIVAIVAISKSFFGHYLGAREG 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhc---CCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999877666666655443 101 12233332221 2235667788888899999999999999999
Q ss_pred HHHHHhh-c--cCCCCC-cchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHhCCCCcchhH
Q 010928 385 LEFQYVS-K--KKQRCP-GWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIKKPSRSGAMW 459 (497)
Q Consensus 385 l~~~~~~-~--~~~~~~-~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~~~~~~~~~~ 459 (497)
+.+.+.+ + ++++.+ +..+.....++.+.++.+|..-|++-.+++-.|+--. .+.|++|...-.|.-.-++.+.+
T Consensus 307 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~- 385 (397)
T TIGR00814 307 LNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYRGR- 385 (397)
T ss_pred HHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhCCC-
Confidence 9997731 1 111122 2233455666778888999999998888885555555 89999999887766332222211
Q ss_pred HHHHHHHHHHH
Q 010928 460 WLNVGLGCLGT 470 (497)
Q Consensus 460 ~~~~~~i~~g~ 470 (497)
+.++++++.|+
T Consensus 386 ~~~~fv~~~g~ 396 (397)
T TIGR00814 386 ISNVFVTVIGL 396 (397)
T ss_pred cchheeEeeec
Confidence 24566555553
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.46 E-value=2.9e-10 Score=117.92 Aligned_cols=240 Identities=13% Similarity=0.032 Sum_probs=137.5
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
++|+.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.......+.|...+.|.. -..-.-+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~--GG~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKS--GGMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCC--CchHHHHHHHcC
Confidence 45678999999999999999999999999988886 467777777777777777777765444431 134455889999
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCccccccccc-chhHHHHHHHHHHHhhcCCCCcchhHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTG-VEWFLVFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
+.++.+..+...+.. ...+.++.+...+.+..++. . ..+. ..+.+...++.+....-.+..+...++
T Consensus 81 ~~~gf~~gw~~~~~~-~~~~~~~a~~~~~y~~~~~~----~-------~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 81 KSGNFMANYTYGVSL-LIANVAIAISAVGYGTELFG----A-------TLSPVQICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc----c-------ccchHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 987776666433322 22223322222233322221 1 0011 112211111111111102344444444
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccc
Q 010928 225 SMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQ 304 (497)
Q Consensus 225 s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~ 304 (497)
..+.....+...+++++........++.+.. .... ....+.++..++....|+|.+-..+..+-+|+ |||+ |
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~-r 220 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSLYVAA-WNPH--HLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPE-R 220 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCC-cCcc--CCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCcc-c
Confidence 4443333322222222211111111111110 0011 11223467778889999999999999999999 7775 4
Q ss_pred cchhHHHHHHHHHHHHHhhhhhee
Q 010928 305 TMWKGTIISYLLIAMCLFPLTITG 328 (497)
Q Consensus 305 ~~~~~~~~a~~~~~~~Y~~~g~~g 328 (497)
++.|++..+..++.++|++.....
T Consensus 221 ~iPrAi~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 221 NVPIAVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999866443
No 17
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.41 E-value=6.2e-10 Score=116.48 Aligned_cols=247 Identities=15% Similarity=0.078 Sum_probs=143.0
Q ss_pred cCCCchHHHHHHHHHhhhhhhhchHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHchhhcCC-CccccHHHHHHHhc
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALLLPVAFAALGW-TWGVICLSISFAWQLYTIWLLVILAESVPG-TRYSRYLHLAVVAF 144 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~-~~gii~li~~~~ls~~s~~lL~~~~~~~~~-~~~~~y~~l~~~~~ 144 (497)
+|+.+.+++++..+++++|+|++.+|....+.|- ...++..++.++..........|...+.|+ .. ..-+..++.+
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~~ 83 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYAREGF 83 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhHc
Confidence 5678999999999999999999999999876553 233555666677777777777777655544 21 3334579999
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
||.+|....+...... .....++.......+..+++..... . ....+.....++.+....-.+.++..+++
T Consensus 84 G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~~p~~~~~------~--~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i 154 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSA-WIGNVAYAVLLFSALGYFFPLFGSG------N--PVPSILGASVLLWVFTFLVLRGVRQAAFI 154 (473)
T ss_pred ccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCC------C--cHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9988887766543322 2334444444444444443311100 0 01111111111111111114566666666
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCCCCCc--ccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCc
Q 010928 225 SMVGAITAVAYCTFIWALSINKGRSNGV--SYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPS 302 (497)
Q Consensus 225 s~~~~~~~~~~~~~v~~~~i~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~ 302 (497)
..+.....+...+++++..+.....++. ++.+..... ....+..+..++....|+|.+-......-+|+ ||
T Consensus 155 ~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~-- 227 (473)
T TIGR00905 155 NTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPS-LGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN-- 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCc-ccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc--
Confidence 6555544333222222222111111111 111100000 12234567788899999999999999999999 65
Q ss_pred cccchhHHHHHHHHHHHHHhhhhheeecc
Q 010928 303 CQTMWKGTIISYLLIAMCLFPLTITGFWA 331 (497)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 331 (497)
+|+..|++..+..++.++|++........
T Consensus 228 ~r~iPrai~~~~~i~~~~Yil~~~~~~~~ 256 (473)
T TIGR00905 228 KSDVGKATVLGTLGALVIYILITLLSLGV 256 (473)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45567999999999999999876654433
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.39 E-value=3.2e-10 Score=117.32 Aligned_cols=243 Identities=14% Similarity=0.088 Sum_probs=138.5
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
++|+.+.++.+...+++++|+|++.+|...++.|-. .++..++.++..........|...+.|+.. ..-+-+++ +|
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~g 78 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-IS 78 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-HC
Confidence 467889999999999999999999999999988853 556666666666666677777766555422 33344667 79
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVS 225 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s 225 (497)
+.+|....+...... .-...++.+...+.+...+... .. + ...+.+...++.+....-.+..|..+.++
T Consensus 79 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~y~~~~~p~~-~~------~---~~~~~~~~~i~~~~~~ln~~gvk~~~~i~ 147 (435)
T PRK10435 79 PAFGFQTGVLYYHAN-WIGNLAIGITAVSYLSTFFPVL-ND------P---IPAGIACIAIVWVFTFVNMLGGTWVSRLT 147 (435)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccc-CC------h---HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 887776655322222 1222333333333333222110 00 0 01111111111111111133444455554
Q ss_pred HHHHHHHHHHHHHHHhHhhccCCCCCc--ccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCcc
Q 010928 226 MVGAITAVAYCTFIWALSINKGRSNGV--SYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSC 303 (497)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~i~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~ 303 (497)
.+..+..+..++..++........++. ++++ . .+..+.++..++....|+|.+-..+...-+|+ |||+
T Consensus 148 ~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~----~-~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~- 217 (435)
T PRK10435 148 TIGLVLVLIPVVGTAIVGWHWFDAATYAANWNT----S-DTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPK- 217 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHhhcccccC----C-CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCcc-
Confidence 443333322222111111111111111 1111 1 22345678899999999999999999999999 7774
Q ss_pred ccchhHHHHHHHHHHHHHhhhhheeecccC
Q 010928 304 QTMWKGTIISYLLIAMCLFPLTITGFWAYG 333 (497)
Q Consensus 304 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG 333 (497)
|++.|++..+..++.++|++..+......+
T Consensus 218 r~iPrAi~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 218 RTVPLATMLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455699999999999999987766544433
No 19
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.39 E-value=1e-09 Score=114.75 Aligned_cols=362 Identities=12% Similarity=0.028 Sum_probs=183.6
Q ss_pred CCCchHHHHHHHHHhhhhhhhchHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 68 RNGNIFYAVFHLISSGIGSQALLLPVAFA-ALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~-~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
|+.+.++.+...+++++|+|++.+|.... .+|....++..++.++..........|...+.|+.. -..-+-+++.||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCc
Confidence 45688899999999999999999988755 455443455567777777777777778766655421 0233448999999
Q ss_pred ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928 147 KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSM 226 (497)
Q Consensus 147 ~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~ 226 (497)
.+|....+...+.. .....+|...+...+...++.... ..+...+.+...++.+....-.+..+..++++.
T Consensus 80 ~~gf~~gw~~w~~~-~~~~~~~~~~~~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~ 150 (468)
T TIGR03810 80 FMGFISAWGYWLSA-WLGNVAYATLLFSTLGYFFPIFGG--------GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINT 150 (468)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccC--------CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 87777766543322 222334444333333322211100 000111121111111111111345555555554
Q ss_pred HHHHHHHHHHHHHHhHhh--ccCCCCCcc-cCCCC-CCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCc
Q 010928 227 VGAITAVAYCTFIWALSI--NKGRSNGVS-YSPSQ-ESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPS 302 (497)
Q Consensus 227 ~~~~~~~~~~~~v~~~~i--~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~ 302 (497)
+..+..+...+++++..+ .++.....+ +...+ ... ....+.++..++....|+|.+-.....+-+|. |+
T Consensus 151 i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~-- 223 (468)
T TIGR03810 151 ITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFS-LGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK-- 223 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCc-cccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC--
Confidence 443332222211111111 111110000 00000 000 11223456678889999999999998888888 54
Q ss_pred cccchhHHHHHHHHHHHHHhhhhheeecccCCcc----CCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcch
Q 010928 303 CQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKV----PVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYA 378 (497)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~----~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~ 378 (497)
+|++.|++..+...+.++|.++.+..+...+.+. + ++....-+++. ...+...+..+..+++.+.+.--..
T Consensus 224 ~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~-~p~~~~~~~~~----~g~~~~~~i~~~~~is~~~~~~~~~ 298 (468)
T TIGR03810 224 RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLK-NPSMAYVLEHM----VGTWGAVLINIGLIISILGAWLSWT 298 (468)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCC-CchHHHHHHHH----cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556699999999999999988776554444221 1 11111111111 1234555666667777776666655
Q ss_pred hchHHHHHHHH--------hhccCCCCCcchhhHHHHHHHHHHHHHHhh-ccchhHHHHhhhhhhhhhHhhhhhHHHHHH
Q 010928 379 MPVFDNLEFQY--------VSKKKQRCPGWVRAGIRLFFGGLTFFIAVA-FPFLGSLAPLIGGIALPLTYVYPCFMYILI 449 (497)
Q Consensus 379 ~p~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~-ip~~~~il~l~Ga~~~~l~filP~l~~l~~ 449 (497)
...-+.+...- ..+.+++.....-+++...+..+..++..+ -+.++.++++.+ .+..+.|+++++.+++.
T Consensus 299 ~~~sR~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~-~~~li~y~~~~~~~~~l 377 (468)
T TIGR03810 299 LLPAEIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT-SAILVPYLWSAAYQVKL 377 (468)
T ss_pred HHHHHHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 55544443311 111111111111122222222221111111 123444544333 22278899999988888
Q ss_pred hCC
Q 010928 450 KKP 452 (497)
Q Consensus 450 ~~~ 452 (497)
+++
T Consensus 378 ~~~ 380 (468)
T TIGR03810 378 SWR 380 (468)
T ss_pred HHh
Confidence 654
No 20
>PRK11021 putative transporter; Provisional
Probab=99.39 E-value=2.3e-09 Score=110.19 Aligned_cols=227 Identities=18% Similarity=0.259 Sum_probs=133.5
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccc
Q 010928 71 NIFYAVFHLISSGIGSQALLLPVAF-AALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLG 149 (497)
Q Consensus 71 s~~~a~~~l~~~~iG~GiL~lP~af-~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g 149 (497)
+.++++...+++|+|+|++.+|-.. +.+| ..+++..++.+++.......+.|...+.|+. -....-+++.+|++++
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG-~~~~~~~~i~~~~~~~~al~~aEl~s~~P~a--GG~y~y~~~~~G~~~g 78 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAG-NNSLWAWPLLILLIFPIAIVFARLGRHFPHA--GGPAHFVGMAFGPRLG 78 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHhHHHHhCchhH
Confidence 5788999999999999999998664 4445 3567777777788777778888877666542 2455568899999988
Q ss_pred hhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 010928 150 KLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGA 229 (497)
Q Consensus 150 ~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~~~ 229 (497)
....+........+. .+........+... .+.+ . ...+.+...++.+....-.+..|..+++..+..
T Consensus 79 f~~gw~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~------~--~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~ 145 (410)
T PRK11021 79 RVTGWLFLSVIPVGL-PAALQIAAGFGQAL----FGWS------S--WQLLLAELLTLALLWLLNLRGASSSANLQTVIA 145 (410)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHHH----cCCC------C--chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 877665433222221 22222222232222 1110 0 111221111111111111345555555544332
Q ss_pred HHHHHHHHHHHhHhhccCCC--CCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccch
Q 010928 230 ITAVAYCTFIWALSINKGRS--NGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMW 307 (497)
Q Consensus 230 ~~~~~~~~~v~~~~i~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~ 307 (497)
+..+..+.. . ...+.. .+..++ .. ...++.++..++....|+|.+...+...-+|+ |||+ |++.
T Consensus 146 ~~~~~i~~~--~--~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~-k~iP 211 (410)
T PRK11021 146 LLIVALVVA--I--WWAGDIKPADIPFP---AP--GSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPE-RDFP 211 (410)
T ss_pred HHHHHHHHH--H--HHHcCCchhcCCCC---CC--CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCcc-cccc
Confidence 222211111 1 111211 111111 00 12345678899999999999999999999999 7775 4567
Q ss_pred hHHHHHHHHHHHHHhhhhhe
Q 010928 308 KGTIISYLLIAMCLFPLTIT 327 (497)
Q Consensus 308 ~~~~~a~~~~~~~Y~~~g~~ 327 (497)
|++..+..++.++|+++...
T Consensus 212 rAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 212 RALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 21
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.38 E-value=1.2e-10 Score=117.59 Aligned_cols=338 Identities=14% Similarity=0.145 Sum_probs=191.1
Q ss_pred CCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCccc
Q 010928 69 NGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKL 148 (497)
Q Consensus 69 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~ 148 (497)
+.|.+|..+.+.++++|+|++.+|...++.+--.+.+..++.+++.......+.+...+.|++ +..+..++.+||..
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKIL 78 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHHH
Confidence 467889999999999999999999988776555567777888888888888888888776652 68889999999988
Q ss_pred chhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHH-HHHhhcCCCCcchhHHHHH
Q 010928 149 GKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMA-IAIAQILPNLNSVAKVSMV 227 (497)
Q Consensus 149 g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-l~l~~~l~~l~~l~~~s~~ 227 (497)
|+.+......+. +..+..-.-..++.+. ....+ +.+.|.+....+. ..... .+.++...+++.+
T Consensus 79 g~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~l~---------~tp~~~~~l~~l~~~~~~~-~~Gi~~i~r~~~i 143 (359)
T TIGR00912 79 GRLLSILFILYF-FLIAAYLIRIFADFIK----TYLLP---------RTPIIVIIILIIIVSIYIV-RKGIEVLLRTAEI 143 (359)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHhcC---------CCCHHHHHHHHHHHHHHHH-HccHHHHHHHHHH
Confidence 888766543333 3333332333333332 21111 1233332222221 11222 5678888888766
Q ss_pred HHHHHHHH-HHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHH-HHHHHHhhchhhHHhHHhhCCCCCCCCcccc
Q 010928 228 GAITAVAY-CTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAI-GKIALAFRGHNLVLEIQGTLPSSRRNPSCQT 305 (497)
Q Consensus 228 ~~~~~~~~-~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~ 305 (497)
-....+.. .+++......+...++ ..|. ....+.+...+. +...++|.+...+.....++ |+|++
T Consensus 144 ~~~~~i~~~~~il~~~~~~~~~~~~--l~P~-----~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~-- 210 (359)
T TIGR00912 144 LLIIFLILFILVLILLAPKLGNIKN--LLPV-----LENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK-- 210 (359)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHH--ccCc-----cccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--
Confidence 66555443 1222222211111111 1111 112233444444 47888998888888888888 55543
Q ss_pred chhHHHHHHHHHHHHHhhhhheeecccCCccCCC--cchhhhcccccCCCCchH---HHHHHHHHHHHHHhhhhhcchhc
Q 010928 306 MWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVN--GGLLSALSQVHGHNTSKH---VMGTIYLLVLINSLSSFQIYAMP 380 (497)
Q Consensus 306 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~--~~il~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~sypl~~~p 380 (497)
..|+...+..++.++|...-+.....+|.+..++ -+.++-.+.. +.++. +-.+.-....+......-+..+.
T Consensus 211 ~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i---~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~ 287 (359)
T TIGR00912 211 IKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLI---NIGDFIERFELIVMTFWVFIIFVKIAFYLYI 287 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999988777777777543210 0111111000 00111 11223333445666667777777
Q ss_pred hHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccc-hhHHHHhhh---hhhh-hhHhhhhhHHHHHHh
Q 010928 381 VFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPF-LGSLAPLIG---GIAL-PLTYVYPCFMYILIK 450 (497)
Q Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~-~~~il~l~G---a~~~-~l~filP~l~~l~~~ 450 (497)
....+.+.+..++++ ....-.. .+.+.++ ..|| ... ..... ...+ ...+++|.++.+...
T Consensus 288 ~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 288 AVKGLSKLFKKRKYS------ILILPVL--MVIFSIS-FFPDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred HHHHHHHHhCCCCcc------hhHHHHH--HHHHHHH-HccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765533221 1221111 1222332 3565 332 22222 2344 677789998877664
No 22
>TIGR00909 2A0306 amino acid transporter.
Probab=99.36 E-value=1.3e-09 Score=112.82 Aligned_cols=298 Identities=16% Similarity=0.099 Sum_probs=171.1
Q ss_pred cCCCchHHHHHHHHHhhhhhhhchHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALLLPVAFA-ALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~-~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
+|+.+.++.++..+++++|+|++.+|.... ..|. .+++..++.+++.........+...+.|+. -..-+-.++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~--Gg~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA--GSPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CcceeeHHHHhC
Confidence 467889999999999999999999986644 4443 345566666777777777777776655542 133344788899
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCC-CCcccccccccchh--H-HHHHHHHHHHhhcCCCCcch
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGG-GSTCEAKSLTGVEW--F-LVFTCMAIAIAQILPNLNSV 221 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~-~~~~~~~~~~~~~~--~-v~~~~~~l~l~~~l~~l~~l 221 (497)
|+.|....+...+.. ...+..+....++.+..++.....+ ...+.....+...+ . +.+..+...+. .+..+..
T Consensus 79 ~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~--~~g~~~~ 155 (429)
T TIGR00909 79 ELTAFIIGWSLWLEY-GVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYIL--YLGAKES 155 (429)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHH--HhCcHHH
Confidence 988887776544433 4445566666677766655421100 00000000000111 1 11111111222 4567777
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCC
Q 010928 222 AKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNP 301 (497)
Q Consensus 222 ~~~s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p 301 (497)
.+++.+.....+...+++++..+.....+ ++.+. .+..+.++..++....++|.+...+....+|+ |||
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p 224 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHFASN--NYTPF-----MPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNP 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhCcHH--hcCCC-----CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCc
Confidence 77776655554443333222222221111 12211 12234567888999999999999999999999 666
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhheeecccCCc--cCCCcchhhhc-ccccCCCCchHHHHHHHHHHHHHHhhhhhcch
Q 010928 302 SCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNK--VPVNGGLLSAL-SQVHGHNTSKHVMGTIYLLVLINSLSSFQIYA 378 (497)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~--~~~~~~il~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~ 378 (497)
+ |+..|++..+..++.++|...........+.+ .+++ +.+... .+. ..++...+..+..+++.+.+..-..
T Consensus 225 ~-r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ 298 (429)
T TIGR00909 225 E-RDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGST-APLSLVGYDL----GQGIGGLILTAGAVFSIASVMLAGI 298 (429)
T ss_pred c-ccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCC-cHHHHHHHHh----CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45569999999999999998865544332221 1111 111111 111 1234555566677777777666655
Q ss_pred hchHHHHHH
Q 010928 379 MPVFDNLEF 387 (497)
Q Consensus 379 ~p~~~~l~~ 387 (497)
....+.+..
T Consensus 299 ~~~sR~~~~ 307 (429)
T TIGR00909 299 YGTSRVLFA 307 (429)
T ss_pred HHHHHHHHH
Confidence 555555544
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.36 E-value=4.9e-09 Score=108.93 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=133.5
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
++|+.+.++++...+++++|+|++.+|...++.|. ..+...++.++........+.|...+.|.. -..-.-+++.+|
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~a--GG~y~~~~~~~g 82 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSP--GGSYAYARRCFG 82 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CChhHHHHHHcC
Confidence 45678999999999999999999999999888774 244555555566665666667766555532 122233888999
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhh-cCCCCcchhHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQ-ILPNLNSVAKV 224 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~-~l~~l~~l~~~ 224 (497)
+.++....+...+.. .....+......+.+..+++.. . +.....+...++.+.+.. -.+..|...++
T Consensus 83 ~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i 150 (445)
T PRK10644 83 PFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSYFFPIL-K----------DPLVLTITCVVVLWIFVLLNIVGPKMITRV 150 (445)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccc-C----------CcHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 987776554433222 1112222222222222221110 0 011111111111112221 03345555555
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccc
Q 010928 225 SMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQ 304 (497)
Q Consensus 225 s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~ 304 (497)
..+.....+..+++..+........++.... .. .. ....+..+..++....|+|.+-......-+|+ |||+ |
T Consensus 151 ~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~-r 222 (445)
T PRK10644 151 QAVATVLALIPIVGIAVFGWFWFRGETYMAA-WN-VS-GLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPK-R 222 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhccCC-cc-cc-ccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCcc-c
Confidence 5444333322222111111111111111000 00 00 12234466778889999999999999999999 7775 3
Q ss_pred cchhHHHHHHHHHHHHHhhhhheee
Q 010928 305 TMWKGTIISYLLIAMCLFPLTITGF 329 (497)
Q Consensus 305 ~~~~~~~~a~~~~~~~Y~~~g~~gy 329 (497)
+..|++..+..+++++|.++.+...
T Consensus 223 ~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 223 NVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5579999999999999998776533
No 24
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.35 E-value=2.4e-09 Score=119.23 Aligned_cols=250 Identities=13% Similarity=0.124 Sum_probs=147.9
Q ss_pred cccCCCchHHHHHHH-HHhhhhhhhch-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhh-cCCCccccHHHHHH
Q 010928 65 TESRNGNIFYAVFHL-ISSGIGSQALL-LPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAES-VPGTRYSRYLHLAV 141 (497)
Q Consensus 65 ~~~~~~s~~~a~~~l-~~~~iG~GiL~-lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~-~~~~~~~~y~~l~~ 141 (497)
.+.++-+++..++.- +.+|+|+|+.- +++...++|...+++.+++.++++..+..-+.+.+.. .++ .-.--...+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~--aGG~Y~yis 150 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK--GGGAYYLIS 150 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccHHHHHHH
Confidence 345677888888887 99999999987 6788889998888888899999999888888776553 221 112224478
Q ss_pred HhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccc-cchhHHHHHHHHHHHhhcCCCCcc
Q 010928 142 VAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLT-GVEWFLVFTCMAIAIAQILPNLNS 220 (497)
Q Consensus 142 ~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~l~l~~~l~~l~~ 220 (497)
+.||+.+|..+.+...+.. ..++..|.+..++.+..++...... .. ..... .+.+..++.+++..+. ....+.
T Consensus 151 ralGp~~Gf~iG~~~~la~-~va~A~~~~Gf~eyl~~lf~~~~~~--~~-~~~~~~~~iia~i~l~ll~~In--~~Gvk~ 224 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFAN-AVAVAMYVVGFAETVLDLLRENGSK--IM-VDPINDIRIYGTVTVVVLLGIS--FAGMEW 224 (953)
T ss_pred HHhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccc--cc-cCccccchHHHHHHHHHHHHHH--HhhHHH
Confidence 8899987877766544333 5567778888888877766432110 00 00111 1112111111111111 234444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccCC-CC--C---cccCCCCCCc-hhhhhH-hhHHHHHHHHHHHhhchhhHHhHHh
Q 010928 221 VAKVSMVGAITAVAYCTFIWALSINKGR-SN--G---VSYSPSQESK-SDMVEF-GNIFNAIGKIALAFRGHNLVLEIQG 292 (497)
Q Consensus 221 l~~~s~~~~~~~~~~~~~v~~~~i~~g~-~~--~---~~~~~~~~~~-~~~~~~-~~~~~~~~i~~faf~~h~~i~~i~~ 292 (497)
.+++..+-++..+..++.+++..+.... .. + .+........ ...... ..+...++++++||.+......+-.
T Consensus 225 ~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sg 304 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISG 304 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333322222222222211110 00 0 0000000000 001111 2377888999999999999999999
Q ss_pred hCCCCCCCCccccchhHHHHHHHHHHHHHhhhhhe
Q 010928 293 TLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTIT 327 (497)
Q Consensus 293 ~m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~ 327 (497)
|+ |+|+ +++.+++..+..+++++|+++.+.
T Consensus 305 El----KnP~-r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 305 DL----KDPQ-KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred hc----cChh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99 7785 456899999999999999988754
No 25
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.34 E-value=2.8e-10 Score=114.63 Aligned_cols=362 Identities=14% Similarity=0.123 Sum_probs=213.2
Q ss_pred cccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCc-cccHHHHHH
Q 010928 65 TESRNGNIFYAVFHLISSGIGSQALLLPVAFAALG--WTWGVICLSISFAWQLYTIWLLVILAESVPGTR-YSRYLHLAV 141 (497)
Q Consensus 65 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G--~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~-~~~y~~l~~ 141 (497)
..+|+.+.+.+++.++++++|+|+...|....+.+ ...+++..+++++++......-.+.....|+.- ...| ..
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ay---i~ 85 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAY---IS 85 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhh---HH
Confidence 35678899999999999999999999998866555 567777888899999999988888765543311 2344 66
Q ss_pred HhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhh-HHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcc
Q 010928 142 VAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGN-METLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNS 220 (497)
Q Consensus 142 ~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~ 220 (497)
++||+.++....+...+...-..+..+-+..++. +.+.+. . |..+ +.+.-.++...+.+.. ..+.-+
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~------c~~p----~~~~~lla~~~l~~lt-~~n~~~ 153 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L------CDVP----RVASKLLAAALLVLLT-LINSFS 153 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C------CCCc----hHHHHHHHHHHHHHHH-HHhhhh
Confidence 7899976665555444444233435555555554 444333 1 3222 2222222222233333 456666
Q ss_pred hhHHHHHHHHHHHH---HHHHHHhHhhc---cCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhC
Q 010928 221 VAKVSMVGAITAVA---YCTFIWALSIN---KGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTL 294 (497)
Q Consensus 221 l~~~s~~~~~~~~~---~~~~v~~~~i~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m 294 (497)
.++.+.+-.+.++. .+.++++..+. .|..++.+.++.+. ...+..++..++=...|||.+-.+.-.+.+|+
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g---~~~~~g~i~lafysglfa~~GWd~lN~vteEi 230 (479)
T KOG1287|consen 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEG---SDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI 230 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccccccc---CcCchHHHHHHHHHhhhcccCchhhccchHhh
Confidence 66666554444432 22222232222 23333333221111 23344567888999999999999999999999
Q ss_pred CCCCCCCccccchhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchh-hhcccccCCCCchHHHHHHHHHHHHHHhhh
Q 010928 295 PSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLL-SALSQVHGHNTSKHVMGTIYLLVLINSLSS 373 (497)
Q Consensus 295 ~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~s 373 (497)
|||+ |++.+++..++.+++++|+++=+..+.+-..+...++|.. ..+.+- .-+++. ....++..++.+.+
T Consensus 231 ----knP~-ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~---~~G~~~-~~ip~~ValS~~G~ 301 (479)
T KOG1287|consen 231 ----KNPR-RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADR---ILGVFA-WAIPFSVALSLIGS 301 (479)
T ss_pred ----cCcc-ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHH---hccchH-HHHHHHHHHHhhhh
Confidence 7784 5678999999999999999887665554332211011221 112110 112222 33444455555555
Q ss_pred hhcchhchHHHHHHHHhhccC--------CCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhH
Q 010928 374 FQIYAMPVFDNLEFQYVSKKK--------QRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCF 444 (497)
Q Consensus 374 ypl~~~p~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l 444 (497)
.--.++...+.+...-. +.+ ++++... ...++......++..+..|+..++++.+=... ...+.+=++
T Consensus 302 ~n~~ifs~SR~~~~~ar-eG~LP~~~s~i~~~~~TP--~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gl 378 (479)
T KOG1287|consen 302 LNSVIFSSSRLFYAGAR-EGHLPAFFSMISVRRFTP--RPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGL 378 (479)
T ss_pred hhhHHHHHHHHHHHHHH-ccCccHHHHhhcCCCCCC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333332111 100 0011111 11233445555566677799999999987777 888888899
Q ss_pred HHHHHhCCCCcc
Q 010928 445 MYILIKKPSRSG 456 (497)
Q Consensus 445 ~~l~~~~~~~~~ 456 (497)
+++|.++++..+
T Consensus 379 l~lR~k~p~~~r 390 (479)
T KOG1287|consen 379 LWLRWKHPPLPR 390 (479)
T ss_pred HHHHhhCCCCCC
Confidence 999998876544
No 26
>PRK15049 L-asparagine permease; Provisional
Probab=99.29 E-value=8.3e-09 Score=108.44 Aligned_cols=358 Identities=12% Similarity=0.077 Sum_probs=179.6
Q ss_pred cCCCchHHHHHHHHHhhhhhhhchHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALLLPV-AFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
+|+.+.++..+..+++++|+|++..|. +++++|- .+++..++.+++.+..+.-+.+...+.|. .-....-+++.+|
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~--aGg~y~y~~~~~G 103 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS--SGSFVSYAREFLG 103 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhC
Confidence 456788899999999999999998876 6777775 45777777888888888888887766555 2266667899999
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVS 225 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s 225 (497)
++++....+...+.. ...+.+-...++..+. .. +. . .. ...|.....++.+....=.+..|....+.
T Consensus 104 ~~~gf~~GW~~~l~~-~~~~~~~~~a~~~~~~----~~-~~---~--~~--~~~~~~~~~~~~l~~~iN~~gvk~~~~i~ 170 (499)
T PRK15049 104 EKAAYVAGWMYFINW-AMTGIVDITAVALYMH----YW-GA---F--GG--VPQWVFALAALTIVGTMNMIGVKWFAEME 170 (499)
T ss_pred cHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----Hh-cc---C--CC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987776666443322 1111111111221111 11 00 0 00 13343222222111111022344444443
Q ss_pred HHHHHHHHHHHHH---HHhHhhccCCCCC-----cccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCC
Q 010928 226 MVGAITAVAYCTF---IWALSINKGRSNG-----VSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSS 297 (497)
Q Consensus 226 ~~~~~~~~~~~~~---v~~~~i~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~ 297 (497)
.......+..++. +.+.....+...+ ..+.. ....+.+..+..+..++...+|+|.+-..+...-+|.
T Consensus 171 ~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~-~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~--- 246 (499)
T PRK15049 171 FWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLIT-DNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC--- 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccc-CCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh---
Confidence 3222111111111 1111111121110 11000 0011022334456667778999999999999999999
Q ss_pred CCCCccccchhHHHHHHHHHHHHHhhhhheeecccCCcc--CCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhh
Q 010928 298 RRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKV--PVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQ 375 (497)
Q Consensus 298 ~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~--~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~syp 375 (497)
|||+ |++.|++..+...+.++|+..........+.+. .++..+..-+++. + ..+...+.++..+++.+.+.-
T Consensus 247 -knP~-r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~-g---~~~~~~ii~~~ilia~~ss~n 320 (499)
T PRK15049 247 -KDPQ-TMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL-G---VPYIGSIMNIVVLTAALSSLN 320 (499)
T ss_pred -cChh-hHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc-C---chhHHHHHHHHHHHHHHHHHH
Confidence 7775 456788888888888888865544333322211 1011222222111 1 123344556666666666665
Q ss_pred cchhchHHHHHHHHhh--------ccCCCCCcchhhHHHHHHHHHHHHHHhhccc--hhHHHHhhhhhhhhhHhhhhhHH
Q 010928 376 IYAMPVFDNLEFQYVS--------KKKQRCPGWVRAGIRLFFGGLTFFIAVAFPF--LGSLAPLIGGIALPLTYVYPCFM 445 (497)
Q Consensus 376 l~~~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~--~~~il~l~Ga~~~~l~filP~l~ 445 (497)
-..+...+.+...-.+ +-+++.....-+++..++.++..++..+.|+ ++.++++.+ ++..+.|++|++.
T Consensus 321 s~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~-~~~li~y~~~~~~ 399 (499)
T PRK15049 321 SGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS-LGIIASWAFIIVC 399 (499)
T ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5555555555442111 1111111111122222222222223233342 333344332 2228899999999
Q ss_pred HHHHhC
Q 010928 446 YILIKK 451 (497)
Q Consensus 446 ~l~~~~ 451 (497)
+++.++
T Consensus 400 ~l~~R~ 405 (499)
T PRK15049 400 QMRLRK 405 (499)
T ss_pred HHHHHH
Confidence 988765
No 27
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.27 E-value=1.2e-08 Score=106.26 Aligned_cols=240 Identities=14% Similarity=0.056 Sum_probs=140.7
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLP-VAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
.+|+.+.++..+..+++++|+|++.+| .+.+++|- .+++..++.+++.+.....+.|...+.|.. -...+.+++.+
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~--Gg~~~~~~~~~ 86 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDT--GSFSTYADDAI 86 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHh
Confidence 567789999999999999999999999 67888886 367777778888888888888877665552 25667799999
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
|+.++....+...+.. ...+.+.....+..+..+ .+. ...|.....++.+....=.+..+...++
T Consensus 87 g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~l~~~----~~~----------~~~~~~~~~~~~~~~~~n~~gv~~~~~~ 151 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFW-VLVIPLEAIAAAGILQYW----FPD----------IPLWLFSLILTIVLTLTNLYSVKSYGEF 151 (452)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----cCc----------CcHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 9987777766543332 333334444444444322 111 1233322222211111102344444444
Q ss_pred HHHHHHHHHHH----HHHHHhHhhccCCC--CCcccCCC-CCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCC
Q 010928 225 SMVGAITAVAY----CTFIWALSINKGRS--NGVSYSPS-QESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSS 297 (497)
Q Consensus 225 s~~~~~~~~~~----~~~v~~~~i~~g~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~ 297 (497)
.....+..+.. +++.+.... .+.. +...+... +...+.+..+.++..++....|+|.+-..+...-+|+
T Consensus 152 ~~~~~~~ki~~l~~~ii~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~--- 227 (452)
T TIGR01773 152 EFWFALIKVIAIIAFIILGAVAIF-GFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES--- 227 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh---
Confidence 43322222111 111111111 1111 11111100 0000012334568899999999999999999999999
Q ss_pred CCCCccccchhHHHHHHHHHHHHHhhhhheee
Q 010928 298 RRNPSCQTMWKGTIISYLLIAMCLFPLTITGF 329 (497)
Q Consensus 298 ~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 329 (497)
|||+ |+..|++..+.....++|+.......
T Consensus 228 -k~P~-r~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 228 -SNPI-KSITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred -cChh-hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 7775 35578887778888888887654433
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.27 E-value=1.6e-08 Score=105.76 Aligned_cols=360 Identities=13% Similarity=0.057 Sum_probs=177.9
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLP-VAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
.+|+.+.++.....+++++|+|++-.| .+++++|- ..++..++++++......-+.+.....+. ..++.+.+++.+
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~--~~~~~~ya~~~~ 94 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE--YKSFSDFASDLL 94 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcHHHHHHHHh
Confidence 456788899999999999999999975 47888887 35666667777666666666665533222 225667899999
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
|+.+|....+...+.. .-...+.....+..+. ...+. .....+..++..+...+- .+..+..+++
T Consensus 95 g~~~gf~~gW~~~~~~-~~~~~a~~~a~~~~~~----~~~p~--------~~~~~~~~~~~~~~~~iN--~~g~~~~~~i 159 (469)
T PRK11049 95 GPWAGYFTGWTYWFCW-VVTGIADVVAITAYAQ----FWFPD--------LSDWVASLAVVLLLLSLN--LATVKMFGEM 159 (469)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HhcCC--------CcHHHHHHHHHHHHHHHH--HHhHHHHHHH
Confidence 9987877776544332 2122223333333322 11111 111122222111111121 2344444444
Q ss_pred HHHHHHHHHHHHHHHHhHhh--c-cC--CCCCc--ccCC-CCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCC
Q 010928 225 SMVGAITAVAYCTFIWALSI--N-KG--RSNGV--SYSP-SQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPS 296 (497)
Q Consensus 225 s~~~~~~~~~~~~~v~~~~i--~-~g--~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~ 296 (497)
..+.....+..++.+++..+ . .+ ...+. .+.+ .+.....+..+.++..++....|+|.+-..+...-+|+
T Consensus 160 ~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~-- 237 (469)
T PRK11049 160 EFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET-- 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh--
Confidence 43333222211111111111 1 11 01110 0110 00100012334568899999999999999999999999
Q ss_pred CCCCCccccchhHHHHHHHHHHHHHhhhhheeecccCCcc--CCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhh
Q 010928 297 SRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKV--PVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSF 374 (497)
Q Consensus 297 ~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~--~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sy 374 (497)
|||+ |++.|++..+...+.++|.+.....+..-+.+. .++....+.+.+. + ..+...+..++.+++.+.+.
T Consensus 238 --knP~-r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~-g---~~~~~~~~~~~~~~s~~~~~ 310 (469)
T PRK11049 238 --KDPE-KSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLV-G---LPAAASVINFVVLTSAASSA 310 (469)
T ss_pred --cCHh-hHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHc-C---ChhHHHHHHHHHHHHHHHHH
Confidence 7775 455688877777777888866544333222111 1011222212111 1 12333444555555554444
Q ss_pred hcchhchHHHHHHHHhh--------ccCCCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhh--h-hhHhhhhh
Q 010928 375 QIYAMPVFDNLEFQYVS--------KKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIA--L-PLTYVYPC 443 (497)
Q Consensus 375 pl~~~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~--~-~l~filP~ 443 (497)
-.......+.+...-.+ +-+++.....-+++......+...+..+.|+....++.+-+++ . .+.|++++
T Consensus 311 ~~~~~~~sR~l~a~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~ 390 (469)
T PRK11049 311 NSGVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIIL 390 (469)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333331110 1111111111122222222222333345666555555444333 2 67888888
Q ss_pred HHHHHHhCC
Q 010928 444 FMYILIKKP 452 (497)
Q Consensus 444 l~~l~~~~~ 452 (497)
+.+++.+++
T Consensus 391 ~a~~~lr~~ 399 (469)
T PRK11049 391 CSYLVYRKQ 399 (469)
T ss_pred HHHHHHHHh
Confidence 888887643
No 29
>PRK10249 phenylalanine transporter; Provisional
Probab=99.26 E-value=1.9e-08 Score=104.83 Aligned_cols=358 Identities=15% Similarity=0.087 Sum_probs=181.3
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVA-FAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
-+|+.+.++..+..+++++|+|++..|-. .+++|- ..++..++.+++......-+.+...+.|.. -++.+.+++.+
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~--Gg~~~y~~~~~ 95 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVS--GSFAHFAYKYW 95 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHh
Confidence 34667888999999999999999998755 556675 467777888888888888888877766552 26667799999
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
|+.+|....+...+.. .....+.....+..+.. ..++ ...|.....++.+....-.+..+..+++
T Consensus 96 g~~~gf~~gw~~~~~~-~~~~~~~~~a~~~~~~~----~~~~----------~~~~~~~~~~~~l~~~lN~~gv~~~~~i 160 (458)
T PRK10249 96 GPFAGFLSGWNYWVMF-VLVGMAELTAAGIYMQY----WFPD----------VPTWIWAAAFFIIINAVNLVNVRLYGET 160 (458)
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----cCCc----------CcHHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 9988877766533322 22222333323322221 1111 1222222221111111103344444444
Q ss_pred HHHHHHHHH---HHHHHHHhHhhccCC-CCCcccCC-CCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCC
Q 010928 225 SMVGAITAV---AYCTFIWALSINKGR-SNGVSYSP-SQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRR 299 (497)
Q Consensus 225 s~~~~~~~~---~~~~~v~~~~i~~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k 299 (497)
.....+.-+ ...+++.+..+..+. .+..+.+. .+...+.+..+.++..++....|+|.+-..+...-+|+ |
T Consensus 161 ~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~ 236 (458)
T PRK10249 161 EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----R 236 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----c
Confidence 322211111 111111011111111 11111110 00000012345678899999999999999999999999 7
Q ss_pred CCccccchhHHHHHHHHHHHHHhhhhheeecccCCcc--CCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcc
Q 010928 300 NPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKV--PVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIY 377 (497)
Q Consensus 300 ~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~--~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~ 377 (497)
+|+ +++.|++..+.....++|...........+++. .++..+..-+.+.. ..+...+..+..+++.+.+..-.
T Consensus 237 ~P~-k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~ 311 (458)
T PRK10249 237 DPE-KSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD----SNVVASALNFVILVASLSVYNSG 311 (458)
T ss_pred CHh-hHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC----chhHHHHHHHHHHHHHHHHHHHH
Confidence 775 456789999988888899865433322222211 10012222221111 12334444555555555555444
Q ss_pred hhchHHHHHHHHh--------hccCCCCCcchhhHHHHHHHHHHHHHHhhccc--hhHHHHhhhhhhhhhHhhhhhHHHH
Q 010928 378 AMPVFDNLEFQYV--------SKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPF--LGSLAPLIGGIALPLTYVYPCFMYI 447 (497)
Q Consensus 378 ~~p~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~--~~~il~l~Ga~~~~l~filP~l~~l 447 (497)
.+...+.+...-. .+.+++.....-+++...+..+..++....|+ ++.++++.+ .+..+.|++|++.++
T Consensus 312 ~~~~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~-~~~~i~y~~~~~~~l 390 (458)
T PRK10249 312 VYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVV-ATLLLNWIMICLAHL 390 (458)
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444444333111 01111111111223333333333333223342 333333221 122889999999999
Q ss_pred HHhC
Q 010928 448 LIKK 451 (497)
Q Consensus 448 ~~~~ 451 (497)
+.++
T Consensus 391 ~~r~ 394 (458)
T PRK10249 391 RFRA 394 (458)
T ss_pred HHHH
Confidence 8763
No 30
>PRK10746 putative transport protein YifK; Provisional
Probab=99.25 E-value=2.9e-08 Score=103.37 Aligned_cols=360 Identities=10% Similarity=0.036 Sum_probs=187.9
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLP-VAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
.+|+.+.++..+.-+.+++|+|++..| .+.+.+|- ..++..++.+++.+....-+.+.....|. .-++.+-+++.+
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~--sGg~~~y~~~~~ 84 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV--TGSFAVYAHRYM 84 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHh
Confidence 456788899999999999999999976 45667776 35667777777778777888887665555 336777899999
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
|+.+|....+...+.. ...+.+.....+..++. +.+. .....|..++..+...+- .+..+..+.+
T Consensus 85 g~~~Gf~~gw~~~~~~-~~~~~~~~~a~~~~l~~----~~p~--------~~~~~~~~~~~~~~~~lN--~~gv~~~~~~ 149 (461)
T PRK10746 85 SPFFGYLTAWSYWFMW-MAVGISEITAIGVYVQF----WFPE--------MAQWIPALIAVALVALAN--LAAVRLYGEI 149 (461)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----ccCC--------CchHHHHHHHHHHHHHHH--HHhHHHHHHH
Confidence 9988877666433222 33333333333333332 1111 111222222222211221 2233333333
Q ss_pred HHH----HHHHHHHHHHHHHhHh-hccCCC-CCcccCCCCCC-chhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCC
Q 010928 225 SMV----GAITAVAYCTFIWALS-INKGRS-NGVSYSPSQES-KSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSS 297 (497)
Q Consensus 225 s~~----~~~~~~~~~~~v~~~~-i~~g~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~ 297 (497)
... -+...+..+++.+... ...+.. +....+...++ .+.+..+.++..++....|+|.+-..+...-+|+
T Consensus 150 e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~--- 226 (461)
T PRK10746 150 EFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA--- 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh---
Confidence 221 1111111111111111 111111 11111100000 0022346678899999999999999999999999
Q ss_pred CCCCccccchhHHHHHHHHHHHHHhhhhheeecccCCccC--CCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhh
Q 010928 298 RRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVP--VNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQ 375 (497)
Q Consensus 298 ~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~--~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~syp 375 (497)
|||+ |++.|++..+.....++|...........+.+.. ++..+...+.+. + ......+.++..+++.+.+.-
T Consensus 227 -knP~-k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~-g---~~~~~~i~~~~il~a~~s~~n 300 (461)
T PRK10746 227 -KNPQ-VTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKI-G---ITAAAGIINFVVLTAALSGCN 300 (461)
T ss_pred -cChh-hHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHh-C---chhHHHHHHHHHHHHHHHHHH
Confidence 7775 5567888877777777887654333333332211 011222222211 1 112233455555566666655
Q ss_pred cchhchHHHHHHHHhh--------ccCCCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh---hhHhhhhhH
Q 010928 376 IYAMPVFDNLEFQYVS--------KKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL---PLTYVYPCF 444 (497)
Q Consensus 376 l~~~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~---~l~filP~l 444 (497)
-..+...+.+...-.+ +-+++.....-+++.....++...+....|+-+.++++.-++++ .+.++++++
T Consensus 301 ~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~ 380 (461)
T PRK10746 301 SGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILI 380 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555442111 10111111111222222222333344446666666665554433 678889988
Q ss_pred HHHHHhCC
Q 010928 445 MYILIKKP 452 (497)
Q Consensus 445 ~~l~~~~~ 452 (497)
.+++.+++
T Consensus 381 ~~i~~r~~ 388 (461)
T PRK10746 381 SQLRFRRA 388 (461)
T ss_pred HHHHHHHh
Confidence 88888754
No 31
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.24 E-value=1.6e-08 Score=105.11 Aligned_cols=241 Identities=15% Similarity=0.096 Sum_probs=134.0
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHH-HHhcCh-HHHHHHHHHHHHHHHHHHHHHHHchhhcCCC-ccccHHHHHHH
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVA-FAALGW-TWGVICLSISFAWQLYTIWLLVILAESVPGT-RYSRYLHLAVV 142 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~-~~gii~li~~~~ls~~s~~lL~~~~~~~~~~-~~~~y~~l~~~ 142 (497)
.+|+.+.++.+...+++++|+|++..|.. .+..|- ...++..++.+++.........|.....|+. ....| .++
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~~ 82 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LKN 82 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HHH
Confidence 45678999999999999999999999876 445563 3345556666667776677777765544421 13455 668
Q ss_pred hcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHh-hcCCCCcch
Q 010928 143 AFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIA-QILPNLNSV 221 (497)
Q Consensus 143 ~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~-~~l~~l~~l 221 (497)
.+|+.++....+.............+....++.+.. ..+. . ...+..+...+.+.+. +-.+..+..
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~----~~~~------~---~~~~~~~~~~~~~~~~~ln~~gv~~~ 149 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF----LTPI------D---PLLGKFIAAGLIIAFMLLHLRSVEGG 149 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC------c---hHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 899987766655433222122233344444443321 1111 0 0111111111111111 113555555
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCC
Q 010928 222 AKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNP 301 (497)
Q Consensus 222 ~~~s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p 301 (497)
.++..+.....+...+++++..+......+.......... ...++.++..++....|+|.+-......-+|+ |||
T Consensus 150 ~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P 224 (445)
T PRK11357 150 AAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIG-ATGSFMALLAGISATSWSYTGMASICYMTGEI----KNP 224 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccccc-ccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCc
Confidence 5555444433332222222221111011111111000001 11224567888999999999999999999999 777
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhhee
Q 010928 302 SCQTMWKGTIISYLLIAMCLFPLTITG 328 (497)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~Y~~~g~~g 328 (497)
+ |++.|++..+..+++++|++.....
T Consensus 225 ~-r~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 225 G-KTMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred c-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4567999999999999999776543
No 32
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.22 E-value=2.7e-08 Score=104.11 Aligned_cols=239 Identities=15% Similarity=0.093 Sum_probs=132.3
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVA-FAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
.+|+.+.++.....+++++|+|++..|-. .+.+|-...++..++.+++.+....-+.|...+.|.. -.+-.-+++.+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~a--GG~y~y~~~~~ 89 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPET--GAFHVYAARYL 89 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHhc
Confidence 35678999999999999999999987755 5677754456677777777877778788877665542 25556788999
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
|+.+|....+...+.. ...+.+.....+..+. ...+. .....+.+++.++...+. .+..|...+.
T Consensus 90 g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~----~~~p~--------~~~~~~~~~~~~~~~~in--~~gvk~~~~~ 154 (471)
T PRK11387 90 GPATGYTVAWLYWLTW-TVALGSSLTAAGFCMQ----YWFPQ--------VPVWPWCLLFCALIFGLN--VVSTRFFAEG 154 (471)
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----hccCc--------CcHHHHHHHHHHHHHHHH--HHhHHHHHHH
Confidence 9987766655433222 2222222222222211 11111 111122222222111111 2344444443
Q ss_pred HHHHHHHHHHHHHHHHhH---hhcc------CCC-CCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhC
Q 010928 225 SMVGAITAVAYCTFIWAL---SINK------GRS-NGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTL 294 (497)
Q Consensus 225 s~~~~~~~~~~~~~v~~~---~i~~------g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m 294 (497)
+.......+..++.+++. .+.. +.. +..+.. ......+....++..++....|+|.+-..+...-+|+
T Consensus 155 ~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 232 (471)
T PRK11387 155 EFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNL--TAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccccc--CCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 322221111111111111 1100 000 001100 0000011223467788888999999999999999999
Q ss_pred CCCCCCCccccchhHHHHHHHHHHHHHhhhhhee
Q 010928 295 PSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITG 328 (497)
Q Consensus 295 ~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~g 328 (497)
|||+ |++.|++..+..++.++|+...+..
T Consensus 233 ----knP~-r~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 233 ----ENPA-KVIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred ----cChh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7785 4567999999988889998776543
No 33
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.22 E-value=7e-09 Score=109.42 Aligned_cols=246 Identities=15% Similarity=0.156 Sum_probs=135.7
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHH-HHhcChH-HHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHh
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVA-FAALGWT-WGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVA 143 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~-~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~ 143 (497)
.+|+.+.++.+...+++++|+|++..|.. .+++|-. ..++..++.+++.......+.+.....|+. -..-.-.++.
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~s--GG~y~~~~~~ 117 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKS--GGEYNYILEV 117 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CchhhhHHhH
Confidence 46778999999999999999999998865 5556632 223445566666666777777776555442 1333446778
Q ss_pred cCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHh-hcCCCCcchh
Q 010928 144 FGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIA-QILPNLNSVA 222 (497)
Q Consensus 144 ~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~-~~l~~l~~l~ 222 (497)
+|+.++.+..+........+.+..+....++.+. ....+. + ..+.....++...+++... .-.+..+...
T Consensus 118 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~---~~~~~~---~---~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~ 188 (501)
T TIGR00911 118 FGPLLAFLRLWIELLVIRPGSQAVNALNFAIYIL---TPVFPD---C---EVPEWAIRLVAVLCVLLLTLVNCLSVKWAT 188 (501)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCC---C---CCchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9998777665543322222333344444443321 111111 0 0011111111111111111 1134555555
Q ss_pred HHHHHHHHHHHHHHHHHHhHh---hccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCC
Q 010928 223 KVSMVGAITAVAYCTFIWALS---INKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRR 299 (497)
Q Consensus 223 ~~s~~~~~~~~~~~~~v~~~~---i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k 299 (497)
++..+.....+..+++.++.. ...+...+.+.+.. ... ...+..++..++....|+|.+-..+..+-+|+ |
T Consensus 189 ~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~-f~~-~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----k 262 (501)
T TIGR00911 189 RVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNA-FEG-TETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----K 262 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccc-cCC-CCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----c
Confidence 555444433332222221221 11221111111100 000 11234567788999999999999999999999 7
Q ss_pred CCccccchhHHHHHHHHHHHHHhhhhheee
Q 010928 300 NPSCQTMWKGTIISYLLIAMCLFPLTITGF 329 (497)
Q Consensus 300 ~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 329 (497)
||+ |+..|++..+..++.++|+++.+...
T Consensus 263 nP~-r~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 263 NPY-RTLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred Cch-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 45679999999999999998865433
No 34
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.19 E-value=4.4e-08 Score=102.02 Aligned_cols=357 Identities=14% Similarity=0.080 Sum_probs=178.4
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVA-FAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
.+|+.+.++..+.-+++++|+|++..|-. .+++|- ..++..++.+++.+....-+.|...+.|.. -++.+-+++.+
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~a--Gg~y~~~~~~~ 86 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVA--GSFSHFAYKYW 86 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHc
Confidence 45678899999999999999999888765 555564 456667777777777777788876655542 25666688899
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
|+..+....+...+.. ...+.+....+++.+... .++ .....+..++..+...+- ....+....+
T Consensus 87 g~~~gf~~Gw~~~~~~-~~~~~~~~~~~~~~~~~~----~p~--------~~~~~~~~i~~~~~~~lN--~~gv~~~~~~ 151 (456)
T PRK10238 87 GSFAGFASGWNYWVLY-VLVAMAELTAVGKYIQFW----YPE--------IPTWVSAAVFFVVINAIN--LTNVKVFGEM 151 (456)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh----cCc--------CcHHHHHHHHHHHHHHHH--HHhHHHHHHH
Confidence 9987777666543333 333444444455544322 111 111222222221111111 2233444444
Q ss_pred HHHHHHHHHHHHHHHHh---HhhccC-CCCCcccCC-CCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCC
Q 010928 225 SMVGAITAVAYCTFIWA---LSINKG-RSNGVSYSP-SQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRR 299 (497)
Q Consensus 225 s~~~~~~~~~~~~~v~~---~~i~~g-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k 299 (497)
+.+.....+..++++++ ..+..+ ..+...... .+...+.+..+.++..+++...|+|.+-..+...-+|+ |
T Consensus 152 ~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----k 227 (456)
T PRK10238 152 EFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----D 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----c
Confidence 43322222211111111 111111 111111110 00000012234467778888999999999999999999 7
Q ss_pred CCccccchhHHHHHHHHHHHHHhhhhhe--eecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcc
Q 010928 300 NPSCQTMWKGTIISYLLIAMCLFPLTIT--GFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIY 377 (497)
Q Consensus 300 ~p~~~~~~~~~~~a~~~~~~~Y~~~g~~--gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~ 377 (497)
||+ |++.|++..+.....+.|...-.. +..-+.+-..++..+..-+.+. + ..+...+.+...+++.+.+..-.
T Consensus 228 nP~-r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~-g---~~~~~~i~~~~i~~~~~s~~~~~ 302 (456)
T PRK10238 228 NPE-QSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHEL-G---DTFVANALNIVVLTAALSVYNSC 302 (456)
T ss_pred Chh-hHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHc-C---ChHHHHHHHHHHHHHHHHHHHHH
Confidence 775 455788877777777777643221 1111111111011222222111 1 12344445555555555555544
Q ss_pred hhchHHHHHHHHh--------hccCCCCCcchhhHHHHHHHHHHHHHHhhccc--hhHHHHhhhhhhh-hhHhhhhhHHH
Q 010928 378 AMPVFDNLEFQYV--------SKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPF--LGSLAPLIGGIAL-PLTYVYPCFMY 446 (497)
Q Consensus 378 ~~p~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~--~~~il~l~Ga~~~-~l~filP~l~~ 446 (497)
.+...+.+...-. .+-+++.....-+++...+..+..++....|+ ++.++++.+ .+ .+.|++|.+.+
T Consensus 303 ~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~ 380 (456)
T PRK10238 303 VYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAH 380 (456)
T ss_pred HHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 5555555443211 01111111111122222222222222222332 444444422 24 78999999999
Q ss_pred HHHhC
Q 010928 447 ILIKK 451 (497)
Q Consensus 447 l~~~~ 451 (497)
++.+|
T Consensus 381 l~~r~ 385 (456)
T PRK10238 381 MKFRR 385 (456)
T ss_pred HHHHH
Confidence 98765
No 35
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.18 E-value=9.8e-09 Score=106.14 Aligned_cols=287 Identities=16% Similarity=0.173 Sum_probs=159.8
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHchhhcCCCccccHHHHHHHhcCcccc
Q 010928 71 NIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQ-LYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLG 149 (497)
Q Consensus 71 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls-~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g 149 (497)
|+++++...+++++|+|+...| .....|.. .++..++.+.+. ........|...+.|+ .-....-+++.+||+++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~--~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS--AGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS--STTHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC--cCeeeehhhhcccccch
Confidence 6788999999999999999999 77777765 444444444444 4555666666554443 22555778999999888
Q ss_pred hhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchh-HHHHHHHHH--HHhhcCCCCcchhHHHH
Q 010928 150 KLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEW-FLVFTCMAI--AIAQILPNLNSVAKVSM 226 (497)
Q Consensus 150 ~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~l--~l~~~l~~l~~l~~~s~ 226 (497)
........+.. ...+.++.....+.+...+. ..+....| ..++.++.+ ....-.+..|..++++.
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 78 FIVGWLYWVAY-ILSLASVASSFASYLLSLFG-----------PDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHTTTTT-----------GGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcccceeEEEe-eccccccccchhhhhhhccc-----------cccccccchheeeeecccccceEeeechhhhhhhhhh
Confidence 77766543333 33344444444444332211 11111111 111111111 11111456666666665
Q ss_pred HHHHHHH-HHHHHHHhHhhccCCCCCcc-----cCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCC
Q 010928 227 VGAITAV-AYCTFIWALSINKGRSNGVS-----YSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRN 300 (497)
Q Consensus 227 ~~~~~~~-~~~~~v~~~~i~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~ 300 (497)
......+ ..+++.++..+.....+... .+.. .+..+..++.+++..+|+|.+-.......+|+ ||
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~ 216 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTF-----FPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCS-----SCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS
T ss_pred hhhhhhhhhhhhhheeEEEeeeccccccccccccccc-----CCccccchhhHHHHHHhhcccccccccccccc----cc
Confidence 5444444 22222222333222111111 1110 11122346888999999999999999999998 54
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhheeecccCCccCC-Ccch---hhhcccccCCCCchHHHHHHHHHHHHHHhhhhhc
Q 010928 301 PSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPV-NGGL---LSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQI 376 (497)
Q Consensus 301 p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~-~~~i---l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl 376 (497)
|+..|++.++..++.++|.+....-....+++..+ .++. ...+.+..+ +.+...+..+...+..+.+...
T Consensus 217 ---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~ 290 (426)
T PF13520_consen 217 ---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG---GSWLAIIVSIAAILSLFGSINA 290 (426)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH---CCTHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc---ccccccccccccccccccccch
Confidence 45679999999999999998876665555543210 0121 111111111 1245556666677777777776
Q ss_pred chhchHHHHHHH
Q 010928 377 YAMPVFDNLEFQ 388 (497)
Q Consensus 377 ~~~p~~~~l~~~ 388 (497)
......+.+...
T Consensus 291 ~~~~~sR~l~~~ 302 (426)
T PF13520_consen 291 FIFGASRLLYAM 302 (426)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhcchhhccccc
Confidence 666666666653
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.18 E-value=5.8e-08 Score=100.86 Aligned_cols=239 Identities=17% Similarity=0.078 Sum_probs=134.7
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
.+|+.+.++.....+.+++|+...+.+.++++.|+...++..++.+++.......+.|...+.|+. -..-..+++.+|
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~--Gg~y~~~~~~~G 82 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA--GGGYGFARRAFG 82 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHhC
Confidence 346678888888888889985556678899999987555566666666666666777776665542 244456889999
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVS 225 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s 225 (497)
+.+|.+..+...+.. .....++....++.+..+++ . .....+.+++..+...+- .+..+..+++.
T Consensus 83 ~~~gf~~gw~~~~~~-~~~~~~~a~~~~~~l~~~~p----~--------~~~~~~~~~~~~~~~~ln--~~g~~~~~~i~ 147 (442)
T TIGR00908 83 PWGGFLAGTAILIEF-AFAPPAIACFIGAYCESLFP----V--------GPGWLAALVFYIVFIGIN--ILGVGEAAKLE 147 (442)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc----c--------CchhHHHHHHHHHHHHHH--HHHHHHHHhHH
Confidence 987777666543332 33444555566665544322 1 011111111111111111 23444444444
Q ss_pred HHHHHHHHHHHHHHHhHhhccCCCCCc-ccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccc
Q 010928 226 MVGAITAVAYCTFIWALSINKGRSNGV-SYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQ 304 (497)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~i~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~ 304 (497)
.+..+..+..+++++..........+. ..+......+.+..+.++..++....|+|.+...+...-+|+ |||++
T Consensus 148 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r- 222 (442)
T TIGR00908 148 FVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR- 222 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-
Confidence 332222222111111111111000010 000000000012234567888889999999999999999999 77743
Q ss_pred cchhHHHHHHHHHHHHHhhhhh
Q 010928 305 TMWKGTIISYLLIAMCLFPLTI 326 (497)
Q Consensus 305 ~~~~~~~~a~~~~~~~Y~~~g~ 326 (497)
+..|++..+..++.++|+..-.
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH
Confidence 4568999998888888876543
No 37
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.15 E-value=1.3e-07 Score=98.71 Aligned_cols=237 Identities=13% Similarity=0.107 Sum_probs=132.5
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVA-FAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
.+|+.+.++..+..+++++|+|++.+|.. .+.+|- .+++..++.+++.......+.+...+.|.. -..-+.+++.+
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~--Gg~y~y~~~~~ 83 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAA--SSFSRYAQENL 83 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHc
Confidence 45678899999999999999999999766 566665 467777788888888888888877665542 25555689999
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
|+.+|....+...+.. ...+.+.....+..+. .+.++ .....|.+.+.++...+- .+..+....+
T Consensus 84 G~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~----~~~~~--------~~~~~~~~~~~~l~~~ln--~~gv~~~~~~ 148 (457)
T PRK10580 84 GPLAGYITGWTYCFEI-LIVAIADVTAFGIYMG----VWFPT--------VPHWIWVLSVVLIICAVN--LMSVKVFGEL 148 (457)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HhCCC--------CChHHHHHHHHHHHHHHH--HccchhHHHH
Confidence 9987777766443322 2222222222222222 11111 111222222222111121 3444555554
Q ss_pred HHHHHHHHHHHHHHHHh----H---hhcc-CCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCC
Q 010928 225 SMVGAITAVAYCTFIWA----L---SINK-GRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPS 296 (497)
Q Consensus 225 s~~~~~~~~~~~~~v~~----~---~i~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~ 296 (497)
........+..++++++ . .... +...+.+.. .......+..+.++..++....|+|.+-..+...-+|+
T Consensus 149 ~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~-- 225 (457)
T PRK10580 149 EFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNL-WSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA-- 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccc-CCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh--
Confidence 43322221111111100 1 1111 111111110 01111022334567888999999999999999999999
Q ss_pred CCCCCccccchhHHHHHHHHHHHHHhhhhh
Q 010928 297 SRRNPSCQTMWKGTIISYLLIAMCLFPLTI 326 (497)
Q Consensus 297 ~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~ 326 (497)
|||+ ++..|++..+.....++|.....
T Consensus 226 --knP~-k~iPrAi~~~~~~~~~~y~~~~~ 252 (457)
T PRK10580 226 --KDPE-KSIPRAINSVPMRILVFYVGTLF 252 (457)
T ss_pred --cChh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 7775 44568887777777777775543
No 38
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.14 E-value=1.5e-07 Score=100.12 Aligned_cols=368 Identities=13% Similarity=0.083 Sum_probs=190.2
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHHH--HhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCC-ccccHHHHHHH
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVAF--AALGWTWGVICLSISFAWQLYTIWLLVILAESVPGT-RYSRYLHLAVV 142 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af--~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~-~~~~y~~l~~~ 142 (497)
.+|+.+.++.+..-++.++|+|+..+|-.. +.+|-. .++..++.++.+........+...+.|.. ....| .++
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y---~~~ 101 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLY---SYV 101 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceee---HHH
Confidence 457789999999999999999999998643 346754 45566667777777777777776555432 13455 667
Q ss_pred hcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCC-CC---cccccccccchhHHHHHHHHHHHhhcCCCC
Q 010928 143 AFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGG-GS---TCEAKSLTGVEWFLVFTCMAIAIAQILPNL 218 (497)
Q Consensus 143 ~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~-~~---~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l 218 (497)
.+|+.++.++.+..++.. ...+.+.....++.+..++....+. .. ....+.+......+.+.++.+......+..
T Consensus 102 ~~G~~~gfi~GW~~~l~~-~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 102 TVGELWAFITGWNLILEY-VIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HhCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 789987776665443332 2222223333344444443321110 00 000011111111111111111111114577
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHhhccCCCCCcccCC-CCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCC
Q 010928 219 NSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSP-SQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSS 297 (497)
Q Consensus 219 ~~l~~~s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~ 297 (497)
|..++++.+.....+..++++++........++..... .....+.+..+.+++.+....+|+|.+-..+...-+|.
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~--- 257 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV--- 257 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc---
Confidence 77777765544444333333333333222222211000 00001123345678899999999999999999999999
Q ss_pred CCCCccccchhHHHHHHHHHHHHHhhhhheeecccCCc-cCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhc
Q 010928 298 RRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNK-VPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQI 376 (497)
Q Consensus 298 ~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~-~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl 376 (497)
|||+ |++.|++..+..+++++|.++.+.-...-+.+ .+.+..+...+. ..+ .++...+..+..++.+..+...
T Consensus 258 -knP~-r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~-~~g---~~~~~~ii~~~~~~~~~~sl~~ 331 (557)
T TIGR00906 258 -KNPQ-RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFE-YVG---WGPAKYIVAVGALCGMSTSLLG 331 (557)
T ss_pred -cCcc-ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHH-HcC---chHHHHHHHHHHHHHHHHHHHH
Confidence 7775 45679999999999999997765533332221 110112222221 111 2344555556666666665555
Q ss_pred chhchHHHHHHHHhh--------ccCCCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhhhhHhhhhhHHHHH
Q 010928 377 YAMPVFDNLEFQYVS--------KKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYIL 448 (497)
Q Consensus 377 ~~~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~~l~filP~l~~l~ 448 (497)
..+...+.+...-.+ +-+++. +.. .....+..+++.+++.+. +++.+.++. +++..+.|+++++..+.
T Consensus 332 ~~~~~sRil~amarDGlLP~~fakv~~r~-~tP-~~Ail~~~iv~~il~~~~-~~~~l~~l~-sig~ll~y~lv~~~~l~ 407 (557)
T TIGR00906 332 GMFPLPRVIYAMARDGLLFKWLAQINSKT-KTP-INATVVSGAIAALMAFLF-DLKALVDLL-SIGTLLAYSLVAACVLI 407 (557)
T ss_pred HHHHHHHHHHHHHcCCCccHHHhccCCCC-CCc-HHHHHHHHHHHHHHHHHc-CHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 555555554442111 101110 111 111111223333344333 455555543 23337888888777777
Q ss_pred HhC
Q 010928 449 IKK 451 (497)
Q Consensus 449 ~~~ 451 (497)
.++
T Consensus 408 lR~ 410 (557)
T TIGR00906 408 LRY 410 (557)
T ss_pred hhc
Confidence 663
No 39
>PRK10836 lysine transporter; Provisional
Probab=99.09 E-value=5.2e-07 Score=94.90 Aligned_cols=240 Identities=12% Similarity=0.077 Sum_probs=132.3
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPV-AFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
.+|+.+.++..+..+++++|+|++..|- +.+++|-...++..++.+++++..+.-+.|...+.|.. -....-+++.+
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~s--Gg~y~y~~~~~ 90 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVS--GSFATYGQNYV 90 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHc
Confidence 4567899999999999999999999995 67777865567888888888888888888887766652 25556688889
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhh-cCCCCcchhH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQ-ILPNLNSVAK 223 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~-~l~~l~~l~~ 223 (497)
|+.+|....+.... . ...+.+.-...... ......+. .....+...+.++...+-+ -.|.......
T Consensus 91 g~~~gf~~Gw~~~~-~-~~~~~a~~~~a~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~ 157 (489)
T PRK10836 91 EEGFGFALGWNYWY-N-WAVTIAVDLVAAQL---VMSWWFPD--------TPGWIWSALFLGVIFLLNYISVRGFGEAEY 157 (489)
T ss_pred ChHHHHHHHHHHHH-H-HHHHHHHHHHHHHH---HhhhcCCC--------CchHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 98877666554322 2 21122211111111 11111111 0111122222221111211 1222223222
Q ss_pred HHHHHHHHHHHH-HHHHHh--HhhccCCC-CCc-ccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCC
Q 010928 224 VSMVGAITAVAY-CTFIWA--LSINKGRS-NGV-SYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSR 298 (497)
Q Consensus 224 ~s~~~~~~~~~~-~~~v~~--~~i~~g~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~ 298 (497)
+..+.-+..+.. +++.+. .....+.. .+. ++.+ .... ....+..+..+.....|+|.+-..+...-+|+
T Consensus 158 ~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~---- 231 (489)
T PRK10836 158 WFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTI-GDAP-FAGGFAAMIGVAMIVGFSFQGTELIGIAAGES---- 231 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCC-CCCC-CcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----
Confidence 221111111111 111111 11111110 011 1110 0001 11233455666666789999999999999999
Q ss_pred CCCccccchhHHHHHHHHHHHHHhhhhhe
Q 010928 299 RNPSCQTMWKGTIISYLLIAMCLFPLTIT 327 (497)
Q Consensus 299 k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~ 327 (497)
|||+ |++.|++..++..+.++|......
T Consensus 232 knP~-r~iPrAi~~~~~~v~~~Yvl~~~~ 259 (489)
T PRK10836 232 EDPA-KNIPRAVRQVFWRILLFYVFAILI 259 (489)
T ss_pred cCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7785 456799999999999999977544
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.06 E-value=9.3e-07 Score=92.81 Aligned_cols=238 Identities=14% Similarity=0.104 Sum_probs=138.0
Q ss_pred CCCchHHHHHHHHHhhhhhhhchHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 68 RNGNIFYAVFHLISSGIGSQALLLP-VAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
|+.+.++..+..+++++|+|++..| .+.+.+|-...++..++.+++.+....-+.|...+.|+. .-.|...+++.+|+
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV-SGSFATYASRFVDP 80 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCc
Confidence 5678889999999999999999865 667777744346667777777777777788877666531 22677789999999
Q ss_pred ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928 147 KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSM 226 (497)
Q Consensus 147 ~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~ 226 (497)
.+|....+...+.. ...+.+.....+..+.. .. + ......|..++.++...+- .+..+..++++.
T Consensus 81 ~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~----~~-~-------~~~~~~~~~~~~~~~~~in--~~gv~~~~~~~~ 145 (478)
T TIGR00913 81 AFGFAVGWNYWLQW-LIVLPLELVTASMTIQY----WT-D-------KVNPAVWIAIFYVFIVIIN--LFGVKGYGEAEF 145 (478)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----cC-C-------CCCHHHHHHHHHHHHHHHH--HhcchHHHHHHH
Confidence 88877766543332 22333344444433331 11 1 1112233322222211221 345555555543
Q ss_pred HHHHHHH----HHHHHHHhHhhccCCCCC--cc---cCCCCCCch--hhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCC
Q 010928 227 VGAITAV----AYCTFIWALSINKGRSNG--VS---YSPSQESKS--DMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLP 295 (497)
Q Consensus 227 ~~~~~~~----~~~~~v~~~~i~~g~~~~--~~---~~~~~~~~~--~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~ 295 (497)
......+ .++++.+.. +..+.... .. +........ ....+.++..++....|+|.+-..+...-+|+
T Consensus 146 ~~~~~ki~~l~~~ii~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~- 223 (478)
T TIGR00913 146 WFSSIKILAIIGFIILSIIL-NCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA- 223 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh-
Confidence 3322111 111111111 11111110 00 000000000 01125678889999999999999999999999
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHHhhhhhe
Q 010928 296 SSRRNPSCQTMWKGTIISYLLIAMCLFPLTIT 327 (497)
Q Consensus 296 ~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~ 327 (497)
|||+ |++.|++..+..++.++|.+..+.
T Consensus 224 ---knP~-r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 224 ---ANPR-KSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred ---cChh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7775 456799999999999999987543
No 41
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.05 E-value=4.7e-08 Score=96.98 Aligned_cols=287 Identities=17% Similarity=0.214 Sum_probs=166.9
Q ss_pred CCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCccc
Q 010928 69 NGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKL 148 (497)
Q Consensus 69 ~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~ 148 (497)
|.|..|....+..+++|+|++.+|...++.+ --|.+..++.+.......++..+..++.|| .+..|..++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~---~~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFPG---KTLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHhCcHH
Confidence 3567899999999999999999999976664 134444555555556666666666665444 388899999999998
Q ss_pred chhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHH-HHHHhhcCCCCcchhHHHHH
Q 010928 149 GKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCM-AIAIAQILPNLNSVAKVSMV 227 (497)
Q Consensus 149 g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~l~l~~~l~~l~~l~~~s~~ 227 (497)
|+.+......+. +......+-..++.+... ..+. ...|.+....+ +..... .+.++.+.+.+.+
T Consensus 77 g~ii~~~~~l~~-l~~~~~~lr~~~~~i~~~---~lp~----------TP~~~i~~~~ll~~~y~a-~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 77 GKIINLLYILYF-LLISALVLREFSEFIKTY---LLPE----------TPIWVIILLFLLVAAYAA-RKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---hcCc----------CCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHH
Confidence 887766544333 333333333444443321 1111 23344333222 222233 6788999886655
Q ss_pred HHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccch
Q 010928 228 GAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMW 307 (497)
Q Consensus 228 ~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~ 307 (497)
-....+...+.+..... ++.+++...+. ...++.+...+.....+.|.+-..+.-+...+ |+|++. .
T Consensus 142 ~~~~~~i~~~~i~~~~~-----~~~~~~~l~P~--~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~~--~ 208 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSI-----PNIDWDNLLPV--LESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKKL--K 208 (320)
T ss_pred HHHHHHHHHHHHHHHhc-----ccCCHHHeeCc--ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchHH--H
Confidence 55554444333333332 22222211110 23445567777777888888888888888888 555443 4
Q ss_pred hHHHHHHHHHHHHHhhhhheeecccCCccCCC--cchhhhcccccCCCCc---hHHHHHHHHHHHHHHhhhhhcchhchH
Q 010928 308 KGTIISYLLIAMCLFPLTITGFWAYGNKVPVN--GGLLSALSQVHGHNTS---KHVMGTIYLLVLINSLSSFQIYAMPVF 382 (497)
Q Consensus 308 ~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~--~~il~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~sypl~~~p~~ 382 (497)
|....+..++.++|...-+.....||.+..++ =+.+.-. +.- +.+ +.+-.+.-....+..+...-+..+...
T Consensus 209 k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~-~~i--~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~ 285 (320)
T PF03845_consen 209 KSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELA-RSI--EIGDFIERLDSIFILIWIIGIFIKISLYLYAAS 285 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHH-HHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888998888888887777777787543211 0000000 000 001 011122233344555666667777777
Q ss_pred HHHHHHHh
Q 010928 383 DNLEFQYV 390 (497)
Q Consensus 383 ~~l~~~~~ 390 (497)
+.+.+.+.
T Consensus 286 ~~~~~~f~ 293 (320)
T PF03845_consen 286 EGLSQLFK 293 (320)
T ss_pred HHHHHHhC
Confidence 77777664
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.04 E-value=5.1e-07 Score=93.75 Aligned_cols=344 Identities=15% Similarity=0.064 Sum_probs=173.6
Q ss_pred HHhhhhhhhchHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchhhhhhhHH
Q 010928 80 ISSGIGSQALLLPV-AFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVM 158 (497)
Q Consensus 80 ~~~~iG~GiL~lP~-af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~ 158 (497)
+++++|+|++..|- +.+++|- .+++..++.+++.......+.|...+.|.. -...+-+++.+|+.+|....+...+
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~--Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDT--GSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHcChHHHHHHHHHHHH
Confidence 57899999999886 7888886 477888888888888888888877665552 2666778899999888777665433
Q ss_pred HhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 010928 159 YLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTF 238 (497)
Q Consensus 159 ~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~~~~~~~~~~~~ 238 (497)
.. ...+.......+..+ ....+ . ...|.....++.+....=.+..|..+.+..+....-+...+.
T Consensus 81 ~~-~~~~~~~~~~~~~~~----~~~~~--------~--~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~ 145 (446)
T PRK10197 81 FW-VLVIPLEANIAAMIL----HSWVP--------G--IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILA 145 (446)
T ss_pred HH-HHHHHHHHHHHHHHH----Hhccc--------c--CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHH
Confidence 22 111222122222211 11111 1 122222222111111110234444444443333222221111
Q ss_pred HHhHhh--ccCCCCC---cccCC-CCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccchhHHHH
Q 010928 239 IWALSI--NKGRSNG---VSYSP-SQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTII 312 (497)
Q Consensus 239 v~~~~i--~~g~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~~~~~~ 312 (497)
.++..+ ..+..+. ....+ .+...+.+..+.++..++....|+|.+-..+....+|+ |||+ |++.|++..
T Consensus 146 ~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~-r~iPrai~~ 220 (446)
T PRK10197 146 FIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPE-KHIVRATNS 220 (446)
T ss_pred HHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChh-hhHHHHHHH
Confidence 111111 1221110 01000 00011023345688999999999999999999999999 7775 456788888
Q ss_pred HHHHHHHHHhhhhheeecccCCccCC---CcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchHHHHHHHH
Q 010928 313 SYLLIAMCLFPLTITGFWAYGNKVPV---NGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQY 389 (497)
Q Consensus 313 a~~~~~~~Y~~~g~~gy~~fG~~~~~---~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~~~l~~~~ 389 (497)
+...+.++|+...+......+.+..+ .+....-+++. + ..+...+.++..+++.+.+..-..+...+.+...-
T Consensus 221 ~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-g---~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~a 296 (446)
T PRK10197 221 VIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL-N---IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLS 296 (446)
T ss_pred HHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc-C---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887554422222211110 01111111111 1 12344555666666666666655555555555421
Q ss_pred hh--------ccCCCCCcchhhHHHHHHHHHHHHHHhhcc--chhHHHHhhhhhhhhhHhhhhhHHHHHHhC
Q 010928 390 VS--------KKKQRCPGWVRAGIRLFFGGLTFFIAVAFP--FLGSLAPLIGGIALPLTYVYPCFMYILIKK 451 (497)
Q Consensus 390 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip--~~~~il~l~Ga~~~~l~filP~l~~l~~~~ 451 (497)
.+ +.++......-+++.....++..+.....| .++.++++.+... .+.|+++++.+++.+|
T Consensus 297 rdg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~-li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 297 RRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA-LLVYLVIAVSQLRMRK 367 (446)
T ss_pred cCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 11 111110011112222222222222222223 2566666555333 5777788777777754
No 43
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.95 E-value=4.6e-07 Score=90.31 Aligned_cols=351 Identities=14% Similarity=0.109 Sum_probs=208.1
Q ss_pred cCCCchHHHHHHHHHhhhhhhhc-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 67 SRNGNIFYAVFHLISSGIGSQAL-LLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
+|+.+..+--+.-+...||+|.. +--.+.+.+|=- -++.-++.|++.+.=++.|.+...++|.. .++.+.+++++|
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~--gSF~~~a~~~lG 88 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVS--GSFSDYARKYLG 88 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CcHHHHHHHHhc
Confidence 34556667788889999999975 467788888843 23445667788888889999987766664 499999999999
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhh---cCCCCcchh
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQ---ILPNLNSVA 222 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~---~l~~l~~l~ 222 (497)
+++|....+...+.- .-.+++-+.-++..++..+.. -..|......+.+.... ..|.+..+.
T Consensus 89 ~~Agf~tgW~YW~~w-v~v~~ae~tAi~~y~~~WfP~--------------vP~Wv~al~~~~l~~~~NL~sVk~FGE~E 153 (462)
T COG1113 89 PWAGFLTGWTYWFFW-VLVGIAELTAIGIYLQFWFPD--------------VPQWVFALAAVVLLLAVNLISVKVFGELE 153 (462)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887777544333 566677666666666543321 13454333333333222 155555555
Q ss_pred HH-HHHHHHHHHHHHHHHHhHhhccCC--CC---CcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCC
Q 010928 223 KV-SMVGAITAVAYCTFIWALSINKGR--SN---GVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPS 296 (497)
Q Consensus 223 ~~-s~~~~~~~~~~~~~v~~~~i~~g~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~ 296 (497)
+. +.+=+..++.++++.++. +..+. .. +++.-..+. -+.++.+.+++.++.+.+|||.+...+-.--.|-
T Consensus 154 fWfAlIKV~aIi~~Iv~G~~l-l~~g~~~~~~~~g~snl~~hG-GffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et-- 229 (462)
T COG1113 154 FWFALIKVAAIIAFIVVGIVL-LFGGFGGGGGAAGFSNLWDHG-GFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA-- 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCCccccccccCC-CcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh--
Confidence 43 333333333322222221 11111 11 122110111 1256667889999999999999999999999999
Q ss_pred CCCCCccccchhHHH-----HHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHh
Q 010928 297 SRRNPSCQTMWKGTI-----ISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSL 371 (497)
Q Consensus 297 ~~k~p~~~~~~~~~~-----~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 371 (497)
|+|++. +.|++. +...-+..+.+++.+..+-.++++.+ ++...|+.. |- .+...+.|...+.+.+
T Consensus 230 --~dP~k~-ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S---PFV~~f~~i-Gi---~~Aa~i~N~VVLtAa~ 299 (462)
T COG1113 230 --KDPEKA-IPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS---PFVTVFSLI-GI---PFAAGIMNFVVLTAAL 299 (462)
T ss_pred --cChhhH-HHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC---cHHHHHHHc-CC---cccccceeEEEeechh
Confidence 666532 234433 34444555666778888877777554 455555332 21 1234445555555555
Q ss_pred hhhhcchhchHHHHHHHHhhcc-CC-------CCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh---hhHhh
Q 010928 372 SSFQIYAMPVFDNLEFQYVSKK-KQ-------RCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL---PLTYV 440 (497)
Q Consensus 372 ~sypl~~~p~~~~l~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~---~l~fi 440 (497)
.+.---.+..-+.+..+-.+++ ++ +.-.+..++++.+...++.++....| +.++.++-+.++ ...+.
T Consensus 300 S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~ 377 (462)
T COG1113 300 SALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWL 377 (462)
T ss_pred hcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHH
Confidence 5655566666666666322111 11 11123446667777778888888899 445554444433 44555
Q ss_pred hhhHHHHHHhC
Q 010928 441 YPCFMYILIKK 451 (497)
Q Consensus 441 lP~l~~l~~~~ 451 (497)
+=.+.|+|.+|
T Consensus 378 ~I~~s~l~~rk 388 (462)
T COG1113 378 MILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHh
Confidence 66677888876
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.80 E-value=1.6e-05 Score=83.14 Aligned_cols=296 Identities=18% Similarity=0.158 Sum_probs=154.7
Q ss_pred cCCCchHH-HHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 67 SRNGNIFY-AVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 67 ~~~~s~~~-a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
+++.+.++ ......+.++|.|++.+|......+ ....+..++.+++.........+...+.|+ .-.+-.-+++.+|
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~--~GG~y~~~~~~~g 87 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS--AGGAYAYAKRALG 87 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeeeehhhhcC
Confidence 34566666 8888889999999999998888775 222222334444444444555554444333 1134445999999
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhh-cCCCCcchhHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQ-ILPNLNSVAKV 224 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~-~l~~l~~l~~~ 224 (497)
++++........+.. .....+........+..++.... . .......+.++..++...+.. -.+..+...++
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~ 159 (466)
T COG0531 88 PRLGFLAGWLYLLAY-VIALAAIAIGAASYLSYLFPGPG-L------LSIGPLLIILIALALIALLTLLNLRGIKASAKI 159 (466)
T ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcch-h------hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 887755555433333 44444444444444433322100 0 000001222211111111111 14456666665
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCCCCCccc-CCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCcc
Q 010928 225 SMVGAITAVAYCTFIWALSINKGRSNGVSY-SPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSC 303 (497)
Q Consensus 225 s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~ 303 (497)
..+.....+...+++.+..+........+. .+... .......+..++....++|.|-..+.+.-+|+ |||++
T Consensus 160 ~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r 232 (466)
T COG0531 160 NSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP---GGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKR 232 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc---ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCccc
Confidence 555444444433333333222221111111 00000 11223368889999999999999999999999 66543
Q ss_pred ccchhHHHHHHHHHHHHHhhhhheeecccCCc-cCC--C-cchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchh
Q 010928 304 QTMWKGTIISYLLIAMCLFPLTITGFWAYGNK-VPV--N-GGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAM 379 (497)
Q Consensus 304 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~-~~~--~-~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~ 379 (497)
. ..|++..+..++.++|....+......+.+ ... + .+..+..... .+.+...+..+..+++...+......
T Consensus 233 ~-ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~g~~~~~~i~~~~~~~~~~~~~~~~~ 307 (466)
T COG0531 233 T-IPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFG----GGNWGAIIIAILALLSLFGSLLAWIL 307 (466)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHc----CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 569999999999999998887766665542 110 0 0122211111 11345555666666666666544444
Q ss_pred chHHHH
Q 010928 380 PVFDNL 385 (497)
Q Consensus 380 p~~~~l 385 (497)
...+.+
T Consensus 308 ~~sR~~ 313 (466)
T COG0531 308 AVSRVL 313 (466)
T ss_pred HHHHHH
Confidence 443333
No 45
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.77 E-value=3.3e-05 Score=81.50 Aligned_cols=247 Identities=14% Similarity=0.126 Sum_probs=120.6
Q ss_pred cCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLY-TIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~-s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
+|+.+.++-+...+++++|.+ .+|.++++.|.. +++..++.+++... ......|.....|+. .-.--.-.++++|
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~-aGG~Y~w~~~~~G 81 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDE-KGGIYSWMNKSVG 81 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCcHHHHHHHHcC
Confidence 467899999999999999975 579889988864 44555555544333 334556655444421 0123344888999
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCC--CcccccccccchhHHHHHHHHH-HHhh-cCCCCcch
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGG--STCEAKSLTGVEWFLVFTCMAI-AIAQ-ILPNLNSV 221 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~l-~l~~-~l~~l~~l 221 (497)
+++|...... ........... ..+...........+.. ........+......++.++.+ .... -.|.++..
T Consensus 82 ~~~gf~~~w~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 82 PKFAFIGTFM-WFASYIIWMVS---TASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred chHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHH
Confidence 9988765432 11110110000 00000000000000000 0000000111111111121111 1111 15666666
Q ss_pred hHHHHHHHHHHHHH----HHHHHhHhhccCCC--CCcccCCCC--CCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhh
Q 010928 222 AKVSMVGAITAVAY----CTFIWALSINKGRS--NGVSYSPSQ--ESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGT 293 (497)
Q Consensus 222 ~~~s~~~~~~~~~~----~~~v~~~~i~~g~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~ 293 (497)
++++.++....+.. +++..+.....+.. ++.+..+.. ... ......++..++....|+|.+...+...-+|
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 236 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNP-AYQSPIAVLSFVVFAIFAYGGIEAVGGLVDK 236 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCC-ccccchHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 66665443332211 11111111111211 111110000 000 1111235677788889999999999999999
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHHHhhhhhe
Q 010928 294 LPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTIT 327 (497)
Q Consensus 294 m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~ 327 (497)
+ |||+ ++..|++..+...+.++|.+..+.
T Consensus 237 ~----~~p~-~~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 237 T----ENPE-KNFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred c----cCCC-ccccHHHHHHHHHHHHHHHHHHHH
Confidence 9 6674 455799999999999999976443
No 46
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.69 E-value=1.2e-07 Score=83.51 Aligned_cols=214 Identities=14% Similarity=0.189 Sum_probs=126.0
Q ss_pred HHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchh-------------hc--CC-------
Q 010928 73 FYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAE-------------SV--PG------- 130 (497)
Q Consensus 73 ~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~-------------~~--~~------- 130 (497)
.....-+.|-++|+|.|+||.||+.+||++++.++.+.+.+++.+.-.+++... +. .+
T Consensus 15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 355677889999999999999999999999999999999999988877766310 00 00
Q ss_pred --------------C------------------ccccHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHH
Q 010928 131 --------------T------------------RYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMET 178 (497)
Q Consensus 131 --------------~------------------~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~ 178 (497)
+ +....++++...|.|. |.-...+.+++..+|-...|--.+-....+
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkv-gln~fyf~iiiylfgdlaiyaaavpfs~m~ 173 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKV-GLNFFYFAIIIYLFGDLAIYAAAVPFSAMN 173 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhh-hHHHHHHHHHHHHhhhhhhhhhcCchHhhh
Confidence 0 0112457777778774 655556666666699999888877766665
Q ss_pred HHHHHcCC-----C--------Cccccccccc----chhHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHh
Q 010928 179 LYKIACGG-----G--------STCEAKSLTG----VEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWA 241 (497)
Q Consensus 179 i~~~~~~~-----~--------~~~~~~~~~~----~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~~~~~~~~~~~~v~~ 241 (497)
+.-...+. + +.|+++-+++ +.++.++++++ -+|+-+-++++-+++..+...+--...+..+.
T Consensus 174 itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll-~lpftf~diqktk~iqiltslmrw~~~~~g~~ 252 (319)
T KOG3832|consen 174 ITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLL-CLPFTFADIQKTKHIQILTSLMRWAAFILGIS 252 (319)
T ss_pred hhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHH-cCceeEeccccchhHHHHHHHHHHHhccchhh
Confidence 54332211 1 2243332322 22333333332 22221345666666654433322111111111
Q ss_pred HhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhC
Q 010928 242 LSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTL 294 (497)
Q Consensus 242 ~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m 294 (497)
.+-.+...+.-..+| ....+-++-..++.-.|+|.||..+|.....+
T Consensus 253 l~tmqaeedaa~a~p------~arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 253 LATMQAEEDAAAAHP------PARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred hhhhhhcccccccCC------ccccccccccccchhhHHHHhhccCCCCCCCC
Confidence 111111111111111 23334466677889999999999999988887
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.65 E-value=0.00014 Score=76.51 Aligned_cols=244 Identities=10% Similarity=-0.035 Sum_probs=116.4
Q ss_pred cCCCchHHHHHHHHHhhhh--hhhch-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHh
Q 010928 67 SRNGNIFYAVFHLISSGIG--SQALL-LPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVA 143 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG--~GiL~-lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~ 143 (497)
+|+-+.++.+..-+. ++| +|+.. .+.+.++.|-...++..++.+++....+.-+.|...+.|+. -....-++++
T Consensus 11 ~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~--Gg~y~~~~~~ 87 (482)
T TIGR00907 11 KREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTS--GGQYFWSAKL 87 (482)
T ss_pred ecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCC--ccHHHHHHHh
Confidence 455666655444444 444 55544 45677778875556777778888888888888877665542 2444557888
Q ss_pred cCcccchhhhhhhHHHh---hhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHh-hcCCCCc
Q 010928 144 FGPKLGKLLAIFPVMYL---SGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIA-QILPNLN 219 (497)
Q Consensus 144 ~G~~~g~~~~~~~~~~~---~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~-~~l~~l~ 219 (497)
+|+++|+....+.-... ....+.+.....++.+........+. ..... +...+..+..++..... .-++..|
T Consensus 88 ~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~i~~~~~~~~~~in~~g~k 163 (482)
T TIGR00907 88 APPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYIP---TRWHIFGIMIGIHLIHALINSLPTK 163 (482)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccc---cCchhhhhHHHHHHHHHHHHHhhHh
Confidence 88766665544322222 12223333333444444333221111 00000 11111111111111111 1022334
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhccCCC--CCcc--cCCCCCCc-hhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhC
Q 010928 220 SVAKVSMVGAITAVAYCTFIWALSINKGRS--NGVS--YSPSQESK-SDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTL 294 (497)
Q Consensus 220 ~l~~~s~~~~~~~~~~~~~v~~~~i~~g~~--~~~~--~~~~~~~~-~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m 294 (497)
.++++..+..+..+...+++.+..+..+.. +..+ ++....+. -...+...+..++....|+|.+-..+...-+|+
T Consensus 164 ~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~ 243 (482)
T TIGR00907 164 WLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc
Confidence 444444333322222221111111111111 1111 11000000 001111245556666789999999999999999
Q ss_pred CCCCCCCccccchhHHHHHHHHHHHHHh
Q 010928 295 PSSRRNPSCQTMWKGTIISYLLIAMCLF 322 (497)
Q Consensus 295 ~~~~k~p~~~~~~~~~~~a~~~~~~~Y~ 322 (497)
|||+ |++.|++..+..++.++|+
T Consensus 244 ----knP~-r~iP~Ai~~s~~i~~~~~~ 266 (482)
T TIGR00907 244 ----ENPE-VVGPRAIIGAVAIGIVTGF 266 (482)
T ss_pred ----CChh-hhcCHHHHHHHHHHHHHHH
Confidence 7774 4567888888777665443
No 48
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.55 E-value=0.00018 Score=73.58 Aligned_cols=357 Identities=16% Similarity=0.112 Sum_probs=210.1
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhc-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQAL-LLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL-~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
-+|+....+-.+.-+...||+|++ +.-.+.+++|=...++..++++.+.+..+.-|.+.+...|. .-+|...+.+..
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~--sGsF~~ya~rfv 119 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV--SGSFSTYATRFV 119 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCchhhhhhhhc
Confidence 345666778888999999999986 58999999999999999999999999999999998776663 336888899998
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhh-cCCCCcchhH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQ-ILPNLNSVAK 223 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~-~l~~l~~l~~ 223 (497)
++.+|..+.+-. .+.-.-++-.-++..+..++ .+.++ .++...|..++.++++.+-. -.|....-.+
T Consensus 120 dpa~GFa~gWnY-w~~w~v~~~~El~aa~~vi~----yW~p~-------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Ef 187 (541)
T COG0833 120 DPAFGFALGWNY-WLNWAVTLPLELTAASLVIQ----YWFPD-------TVPPWIWIAIFLVLIFLLNLFGVKGFGETEF 187 (541)
T ss_pred CchHHHHHHHHH-HHHHHHHhhHHHHHHHHhhh----hhcCC-------CCChHHHHHHHHHHHHHHHHhcccccceehH
Confidence 887676555432 22212222223333333332 22211 23457787777766665544 2666666655
Q ss_pred H-HHHHHHHHHHHHHHHHhHhhccCCCC-----CcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCC
Q 010928 224 V-SMVGAITAVAYCTFIWALSINKGRSN-----GVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSS 297 (497)
Q Consensus 224 ~-s~~~~~~~~~~~~~v~~~~i~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~ 297 (497)
. |.+=++.++.++++.++.. .|..+ +.++... +.. ....+.++...+-+..|||.+...+---..|-
T Consensus 188 w~s~iKV~~ii~Fii~gii~~--~Gg~~~~~~ig~~yw~~-pg~-F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs--- 260 (541)
T COG0833 188 WFSSIKVLTIIGFIILGIIII--CGGGPTHGYIGFNYWHD-PGA-FAGGFKGFCSVFVIAAFSFSGTELVGLAAGES--- 260 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCcceeeecC-CCC-CCcchHHHHHHHhhheeeeeceeeeeeeeccc---
Confidence 4 5544444444433332221 12111 1222211 111 33446778888888889999998888888888
Q ss_pred CCCCccccchhHHHHHHHHHHHHHhhhh-heeec-ccCC---------ccCCCcchhhhcccccCCCCchHHHHHHHHHH
Q 010928 298 RRNPSCQTMWKGTIISYLLIAMCLFPLT-ITGFW-AYGN---------KVPVNGGLLSALSQVHGHNTSKHVMGTIYLLV 366 (497)
Q Consensus 298 ~k~p~~~~~~~~~~~a~~~~~~~Y~~~g-~~gy~-~fG~---------~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~ 366 (497)
+||+ +.+.|++.-.+.=..++|+..- +.|.. -|.| ++. .+++...++|- | -..+..+.|...
T Consensus 261 -~nP~-K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~-~SPFvia~~~~-G---i~~~~~imNaVI 333 (541)
T COG0833 261 -ENPR-KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVA-ASPFVIAIKNA-G---IPVAASIMNAVI 333 (541)
T ss_pred -CCch-hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCcc-CCChhHhHHhc-C---CccchHHHHHHH
Confidence 6664 3345666666666666666332 12222 2222 111 12444444322 1 123556778888
Q ss_pred HHHHhhhhhcchhchHHHHHHHHhhcc-C-------CCCCcchhhHHHHHHHHHHHHHHhhcc--chhHHHHhhhhhhhh
Q 010928 367 LINSLSSFQIYAMPVFDNLEFQYVSKK-K-------QRCPGWVRAGIRLFFGGLTFFIAVAFP--FLGSLAPLIGGIALP 436 (497)
Q Consensus 367 ~~~~~~sypl~~~p~~~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~iA~~ip--~~~~il~l~Ga~~~~ 436 (497)
+++++.+---.++...+.+..+-.++. + ++-..+..++++...-+++++-+..-. -++.++++.|.. +.
T Consensus 334 L~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s-~~ 412 (541)
T COG0833 334 LTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS-GF 412 (541)
T ss_pred HHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HH
Confidence 888888888888888888887433221 1 111112334555555555555554422 155566665532 35
Q ss_pred hHhhhhhHHHHHHhC
Q 010928 437 LTYVYPCFMYILIKK 451 (497)
Q Consensus 437 l~filP~l~~l~~~~ 451 (497)
++.+-=++.|++.+|
T Consensus 413 i~W~~I~~shirFR~ 427 (541)
T COG0833 413 IAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555677777653
No 49
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.54 E-value=0.00097 Score=69.97 Aligned_cols=251 Identities=13% Similarity=0.050 Sum_probs=124.5
Q ss_pred ccCCCchHHHHHHHHHhh-hhhhhchHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHh
Q 010928 66 ESRNGNIFYAVFHLISSG-IGSQALLLP-VAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVA 143 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~-iG~GiL~lP-~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~ 143 (497)
-+|+-+.++.+..-++.+ +|+|+.+.| .+..+.|- ..+...++.++.......-+.|...+.|.. -..-.-+++.
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~a--GG~Y~~~~~~ 87 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPIS--GAIYQWSRRM 87 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCHHHHHHHH
Confidence 346677777776666654 899999876 44556665 455666666677777777777766655542 1333457888
Q ss_pred cCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHH--cCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcch
Q 010928 144 FGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIA--CGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSV 221 (497)
Q Consensus 144 ~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l 221 (497)
+|+.++.+..+...+.. ...+.+........+..+.... .+.+.....+.-....+.+...++.+....-.+..|..
T Consensus 88 ~g~~~gf~~gW~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~ 166 (475)
T TIGR03428 88 GGEVIGWFAGWFMIIAQ-IVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWM 166 (475)
T ss_pred cCccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 99988887766544333 2222222222333332221111 01000000000000112221111111111113345555
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCC-CCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCC
Q 010928 222 AKVSMVGAITAVAYCTFIWALSINKGR-SNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRN 300 (497)
Q Consensus 222 ~~~s~~~~~~~~~~~~~v~~~~i~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~ 300 (497)
+++..+..+..+..++++++....... .+...++...... .+.....+..+.....|+|.+-..+..+-+|+ ||
T Consensus 167 ~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----kn 241 (475)
T TIGR03428 167 SRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGA-SPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KN 241 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCC-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cC
Confidence 555544443333222222222221111 1111111000000 11112345566667789999999999999999 77
Q ss_pred CccccchhHHHHHHHHHHHHHhhhhh
Q 010928 301 PSCQTMWKGTIISYLLIAMCLFPLTI 326 (497)
Q Consensus 301 p~~~~~~~~~~~a~~~~~~~Y~~~g~ 326 (497)
|+ |+..|++..+..+..++|.++-+
T Consensus 242 P~-r~iPrai~~s~~i~~~~~~~~~~ 266 (475)
T TIGR03428 242 PR-RVAPRTILTALSVSALGGGLMIL 266 (475)
T ss_pred cc-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 75 45578888888877665554433
No 50
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.54 E-value=0.00023 Score=74.66 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=41.6
Q ss_pred HHHHHhhchhhHHhHHhhCCCCCCCCccccchhHHHHHHHHHHHHHhhhhheeecccC
Q 010928 276 KIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYG 333 (497)
Q Consensus 276 i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG 333 (497)
.+.++|.+-..+...-+|+ |||+ |+..|++..+..++.++|.+..+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~----knP~-r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDV----DNPD-KNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhc----cCcc-cchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4578999999999999999 7775 456799999999999999876554333333
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.50 E-value=0.00024 Score=75.02 Aligned_cols=51 Identities=12% Similarity=-0.022 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccchhHHHHHHHHHHHHHhhhhh
Q 010928 271 FNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTI 326 (497)
Q Consensus 271 ~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~ 326 (497)
...+..++|+|.+-..+...-+|+ |||+ |++.|++..+..++.++|.+..+
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~----knP~-r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINEL----ENPG-RDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHc----cCCc-ccccHHHHHHHHHHHHHHHHHHH
Confidence 345555689999999999999999 7774 45569999998888888876443
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.43 E-value=3.4e-06 Score=88.59 Aligned_cols=243 Identities=16% Similarity=0.126 Sum_probs=134.4
Q ss_pred HHhhhhhhhch-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchhhhhhhHH
Q 010928 80 ISSGIGSQALL-LPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVM 158 (497)
Q Consensus 80 ~~~~iG~GiL~-lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~ 158 (497)
+.+++|+|++. .+.+..+.|....++..++.+++...++.-+.+...+.|. .-++-..+++.+|+.+|....+....
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~--~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS--AGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc--ccchhhhhhhccCCcCCceeeHHHHH
Confidence 56678888766 6789999998777888888888888888888887776553 33666778999999988877765322
Q ss_pred HhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhh-cCCCCcchhHHH-HHHHHHHHHHH
Q 010928 159 YLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQ-ILPNLNSVAKVS-MVGAITAVAYC 236 (497)
Q Consensus 159 ~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~-~l~~l~~l~~~s-~~~~~~~~~~~ 236 (497)
.. ...........+..++.. +. ..+ ....+.....|..++.+++..+.. -.|...+..+.- .+-++..+.++
T Consensus 85 ~~-~~~~~~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SY-IAAIAAEATAAGSFLQFW-GY-FPG---LPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HH-HHHHHhhhhhhhhhhccc-cc-ccc---ccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence 22 323333333333333322 00 000 000000001122233332222222 133333332221 11111111111
Q ss_pred HHHHhHhhccCCCCCc-cc--CC-----CCC---CchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCcccc
Q 010928 237 TFIWALSINKGRSNGV-SY--SP-----SQE---SKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQT 305 (497)
Q Consensus 237 ~~v~~~~i~~g~~~~~-~~--~~-----~~~---~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~ 305 (497)
+..++.....+...+. .+ +. .+. +. ....+.++..++...+++|.+-..+...-+|. |||+ |+
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~-k~ 232 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDP-SGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPR-KT 232 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccc-cccchhHHHHhhhhhhcccccccccccccccC----CCch-hh
Confidence 1110111111111111 00 00 000 01 12346789999999999999999999999999 7775 45
Q ss_pred chhHHHHHHHHHHHHHhhhhheeecccCCcc
Q 010928 306 MWKGTIISYLLIAMCLFPLTITGFWAYGNKV 336 (497)
Q Consensus 306 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~ 336 (497)
+.|++..+.....++|.......-...+.+.
T Consensus 233 IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 233 IPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 6799999999999999988776666655443
No 53
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.41 E-value=0.00013 Score=69.96 Aligned_cols=135 Identities=16% Similarity=0.285 Sum_probs=91.2
Q ss_pred HHHHHHHHhhhhhhhch---HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccch
Q 010928 74 YAVFHLISSGIGSQALL---LPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGK 150 (497)
Q Consensus 74 ~a~~~l~~~~iG~GiL~---lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~ 150 (497)
.-.|..+.+++|+|.-+ +=.-|.+-|+. |...+++.+.+-..++..+.+..++. + ..+|+|.-++.+|+++++
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f-~--a~~y~~~~~~v~~~~~~k 82 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF-N--ATSYREILKYVSGPKFAK 82 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh-c--ccchHHHHHHHhhHHHHH
Confidence 44566777999999876 33345556665 66667777778888888888877652 3 569999999999999999
Q ss_pred hhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHH--HHHHHHHHHhhcCCCCcchhHHHHHH
Q 010928 151 LLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFL--VFTCMAIAIAQILPNLNSVAKVSMVG 228 (497)
Q Consensus 151 ~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~l~l~~~l~~l~~l~~~s~~~ 228 (497)
+.+...++++ ++.++.-+-..+..+.+.++ -++|.- ++..++.... ++++.+.+-.+..+-
T Consensus 83 i~d~~iif~l-f~~~vVM~AGags~~~e~~~---------------lP~wiGali~i~~v~i~l-fl~~vegi~tvn~iI 145 (349)
T COG3949 83 IIDIIIIFFL-FSTAVVMLAGAGSLLEEMFG---------------LPYWIGALIIILLVLILL-FLGRVEGIITVNGII 145 (349)
T ss_pred HHHHHHHHHH-HHHHHHHhccchhHHHHHhC---------------ccHHHHHHHHHHHHHHHH-HHhcccceeeeheeH
Confidence 9988765655 88888877777766664332 244543 3333223333 377788876665443
Q ss_pred H
Q 010928 229 A 229 (497)
Q Consensus 229 ~ 229 (497)
+
T Consensus 146 ~ 146 (349)
T COG3949 146 T 146 (349)
T ss_pred H
Confidence 3
No 54
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.26 E-value=0.00011 Score=77.28 Aligned_cols=367 Identities=14% Similarity=0.037 Sum_probs=195.4
Q ss_pred cCCCchHHHHHHHHHhhhhhhhch-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALL-LPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~-lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
+|+.+.+.-.+.=+.+++|+|++- ...+.++.|-..-++..++++..++.++.-+.+..-+.|.. .-++-.-+++..|
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~-aGs~~~ya~~~i~ 107 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS-AGSFYTYAYRFVG 107 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc-cccceeeeeeeeC
Confidence 455666666667788999999986 57888899888888888888888888888899877666642 1133333777778
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcc-cccccccchhHHHHHHHH-HHHhhcCCCCcchhH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTC-EAKSLTGVEWFLVFTCMA-IAIAQILPNLNSVAK 223 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~-l~l~~~l~~l~~l~~ 223 (497)
+-++..+.+-..+.. +-.+-+-....+..++.+. +.+..- ..+..+...|...+.++. ++.....+-....++
T Consensus 108 e~~aF~~gWny~l~y-~i~~a~e~~a~s~~~~~w~----~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 108 ESLAFAIGWNYLLEY-VIGLAAEARAWSSYLDYWT----GASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred cHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHh----ccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 876666555332222 2223333333333443332 000000 001222233443333222 222212444444444
Q ss_pred HHHHHHHHHHH-HHHHHHhHhhccCC-CCCc-ccCC---C-CCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCC
Q 010928 224 VSMVGAITAVA-YCTFIWALSINKGR-SNGV-SYSP---S-QESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPS 296 (497)
Q Consensus 224 ~s~~~~~~~~~-~~~~v~~~~i~~g~-~~~~-~~~~---~-~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~ 296 (497)
......+.++. +.++.++. ..|. +.+. +|.. + ++..+.+..+.++..++.+..|+|.+-..+-..-+|-
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi--~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~-- 258 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVI--IAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA-- 258 (554)
T ss_pred hHHHHHHHHHHHHHHhheee--ecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc--
Confidence 43333333222 22211111 1121 1111 2211 0 0111134447789999999999999999999999999
Q ss_pred CCCCCccccchhHHHHHHHHHHHHHhhhhheeecccC-Cc--cCCCc----chhhhcccccCCCCchHHHHHHHHHHHHH
Q 010928 297 SRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYG-NK--VPVNG----GLLSALSQVHGHNTSKHVMGTIYLLVLIN 369 (497)
Q Consensus 297 ~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG-~~--~~~~~----~il~~~~~~~~~~~~~~~~~i~~~~~~~~ 369 (497)
|||+ +...+++..++..++++|....+.--+.-. ++ ...+. .+.... +. ..-.++-.+.++..++.
T Consensus 259 --kNP~-k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai-~~---~~~k~~~~ivna~iL~~ 331 (554)
T KOG1286|consen 259 --KNPR-KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAI-GN---AGAKYLPHIVNAGILIG 331 (554)
T ss_pred --cCCc-ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHH-hc---cCccccchhhhHHHHHH
Confidence 7775 455789999999999999987754322211 11 11000 111011 00 11122223788888888
Q ss_pred HhhhhhcchhchHHHHHHHHhhcc-CC---CCCcchh-hHHHHHHHHHHHHHHhhccc-----hhHHHHhhhhhhhhhHh
Q 010928 370 SLSSFQIYAMPVFDNLEFQYVSKK-KQ---RCPGWVR-AGIRLFFGGLTFFIAVAFPF-----LGSLAPLIGGIALPLTY 439 (497)
Q Consensus 370 ~~~sypl~~~p~~~~l~~~~~~~~-~~---~~~~~~~-~~~~~~~~~~~~~iA~~ip~-----~~~il~l~Ga~~~~l~f 439 (497)
+..+---..++.-+.+..+-..+. ++ +.+++.+ +....+..+...+.++.... ++.++++.|-- ..+++
T Consensus 332 ~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~-tl~~w 410 (554)
T KOG1286|consen 332 LLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIG-TLFAW 410 (554)
T ss_pred HHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHH-HHHHH
Confidence 888888888888888877432110 00 1111222 22222222333333333322 57777777633 35555
Q ss_pred hhhhHHHHHHhC
Q 010928 440 VYPCFMYILIKK 451 (497)
Q Consensus 440 ilP~l~~l~~~~ 451 (497)
.+=++.|++.++
T Consensus 411 ~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 411 TLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHeeeee
Confidence 555666666543
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.16 E-value=0.0042 Score=65.09 Aligned_cols=335 Identities=10% Similarity=0.003 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchh
Q 010928 72 IFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKL 151 (497)
Q Consensus 72 ~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~ 151 (497)
|....+++.+-.+++|.++. ..++..+++.+++-.++...-+.+..+...+ ...++.-++|..||.++.++
T Consensus 36 W~g~~~~i~~~~~~g~~l~~-----GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~----~Gl~~~v~sR~sFG~~Gs~l 106 (484)
T PRK11375 36 WMGSVHNVPNYVMVGGFFIL-----GLSTFSIMLAIILSAFFIAAVMVLNGAAGSK----YGVPFAMILRASYGVRGALF 106 (484)
T ss_pred HHHHhccHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHHHHHHHHhcccccc----cCCChhHhHHHHHccccchH
Confidence 44555555565455565542 2334444555444433333333333333222 24589999999999985565
Q ss_pred hhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCccc----ccccccchhHH--HHHHHHHHHhhcCCCCcchhHHH
Q 010928 152 LAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCE----AKSLTGVEWFL--VFTCMAIAIAQILPNLNSVAKVS 225 (497)
Q Consensus 152 ~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~----~~~~~~~~~~v--~~~~~~l~l~~~l~~l~~l~~~s 225 (497)
...+..+...+|=-..=....++.+..+++...+.-..-+ ...++...++. ++.++..++. ....+.++++.
T Consensus 107 ~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~--~~g~~~i~~l~ 184 (484)
T PRK11375 107 PGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG--FGGGKVLNKFT 184 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH--HcCHHHHHHHH
Confidence 5443312232333333344566666666554432100000 00111112222 2222222222 45667777766
Q ss_pred HHHHHHHHHHHHHHHhHhhccCCCCC-cccCCCCCCchhhhhHhhHHHHHHHHHHHhh-chhhHHhHHhhCCCCCCCCcc
Q 010928 226 MVGAITAVAYCTFIWALSINKGRSNG-VSYSPSQESKSDMVEFGNIFNAIGKIALAFR-GHNLVLEIQGTLPSSRRNPSC 303 (497)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~-~h~~i~~i~~~m~~~~k~p~~ 303 (497)
.++........+...+..+.+....+ .+..+..... .....+.+..++...+=++. .-.+.|++-+.. |++++
T Consensus 185 ~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~----k~~~~ 259 (484)
T PRK11375 185 AILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQK-AENSGFLFLVVINAVVAVWAAPAVSASDFTQNA----HSFRA 259 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccC-CcchHHHHHHHHHHHHHHHHHHHccccchhccc----CChhh
Confidence 66555554333322223332221111 1121110001 11123445555544444454 344788888888 55543
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhee----ecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhh-hcch
Q 010928 304 QTMWKGTIISYLLIAMCLFPLTITG----FWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSF-QIYA 378 (497)
Q Consensus 304 ~~~~~~~~~a~~~~~~~Y~~~g~~g----y~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sy-pl~~ 378 (497)
.. +...+++.+...+...+|++. ...+|.... |..+-+.+. + +.....++-+...++...+= ....
T Consensus 260 ~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~---dp~~i~~~~---~-~~~~~~~a~l~~v~a~~~tN~~~N~ 330 (484)
T PRK11375 260 QA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTW---NVLDIVQRW---D-SLFASFFAVLVILMTTISTNATGNI 330 (484)
T ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC---CHHHHHHHh---c-chHHHHHHHHHHHHHHHHHHHHhhc
Confidence 32 444455555555444444332 335555433 333333221 1 12344445555666666663 4677
Q ss_pred hchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhh--ccc---hhHHHHhhhhhhhhhH
Q 010928 379 MPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVA--FPF---LGSLAPLIGGIALPLT 438 (497)
Q Consensus 379 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~--ip~---~~~il~l~Ga~~~~l~ 438 (497)
++.-..+...+.++ .++ +|... +.-+++.+++.. +.+ |..++++.|++.+++.
T Consensus 331 ys~~~~l~~l~pk~----i~~-~~~~~--i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~ 388 (484)
T PRK11375 331 IPAGYQIAALAPTK----LTY-KNGVL--IASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVI 388 (484)
T ss_pred ccHHHHHHHhCcCc----cch-hhHHH--HHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 88877777755422 111 22111 111222333221 223 7888888888877443
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.11 E-value=0.0038 Score=64.80 Aligned_cols=246 Identities=12% Similarity=0.019 Sum_probs=117.5
Q ss_pred hHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchh
Q 010928 72 IFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKL 151 (497)
Q Consensus 72 ~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~ 151 (497)
|+...+++.+-..|+....+ -.++..+++..++-.++...-+-+......+ . ..++.-+.|..||.++.++
T Consensus 23 W~~~~~~v~~~~~Ga~l~~~-----GLs~~~ailai~lG~~i~~~~~~l~~~~G~r-~---Gl~~~v~sR~~FG~~Gs~~ 93 (442)
T TIGR00800 23 WLGAAFNIATWAIGALGLPL-----GLSWWQSVIAIILGNLLGGIFVALNSRAGAK-Y---GLPFPVLSRASFGIYGSLL 93 (442)
T ss_pred HHHHhhhHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH-h---CCCcchhhhhhhhhhHhHH
Confidence 45566666666666543321 1334444444444433333323333332222 1 3477788999999985554
Q ss_pred hhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhH--HHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 010928 152 LAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWF--LVFTCMAIAIAQILPNLNSVAKVSMVGA 229 (497)
Q Consensus 152 ~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~l~l~~~l~~l~~l~~~s~~~~ 229 (497)
. .+...+..+|=...=....++.+..+++...+....-. ..++...+. +++..+.+++.. ..-.+-..+....+.
T Consensus 94 ~-~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~-~~~t~~~~~~~~i~~~l~~~~~~-~~g~~~~~~~~~~a~ 170 (442)
T TIGR00800 94 P-SLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLG-NGMTTLELICFIIFWALVLVFLF-FFGYKIRHLFEWLAV 170 (442)
T ss_pred H-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccC-CcccHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 4 44445555676666677778888777776543310000 001111222 223333333233 333333333444433
Q ss_pred HHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHH-hhchhhHHhHHhhCCCCCCCCccccchh
Q 010928 230 ITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALA-FRGHNLVLEIQGTLPSSRRNPSCQTMWK 308 (497)
Q Consensus 230 ~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fa-f~~h~~i~~i~~~m~~~~k~p~~~~~~~ 308 (497)
...+....+.+......+...+....+ .... .......+..++...+-. -..-.+.++..+.+ |++++.. +
T Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~~--~ 242 (442)
T TIGR00800 171 VPPFAAFGMLIWALSKAHGKGPLGELT-GTLH-GSTGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTAI--W 242 (442)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccCC-CCCC-cchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccchH--H
Confidence 333222222211211111111111110 0001 223345566666654432 33456789999999 5444433 4
Q ss_pred HHHHHHHHHHHHHhhhhheeecc----cCCccC
Q 010928 309 GTIISYLLIAMCLFPLTITGFWA----YGNKVP 337 (497)
Q Consensus 309 ~~~~a~~~~~~~Y~~~g~~gy~~----fG~~~~ 337 (497)
...+++.........+|+.+-.. +|+..-
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~ 275 (442)
T TIGR00800 243 GQFLALPGGFTLTCFFGILGAAAAYAAYGEPYW 275 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 56667777777777777776655 776543
No 57
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.93 E-value=0.0075 Score=61.99 Aligned_cols=238 Identities=14% Similarity=0.068 Sum_probs=110.7
Q ss_pred hHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchh
Q 010928 72 IFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKL 151 (497)
Q Consensus 72 ~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~ 151 (497)
.+...|.+.+..-|. .-++.+.....|-..-+-..++.+..+..+..-|.+.+...|.... -|--.+ .+-|++++++
T Consensus 55 ~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGg-Ly~waa-~lap~k~~~~ 131 (550)
T KOG1289|consen 55 IFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGG-LYFWAA-VLAPPKYGPF 131 (550)
T ss_pred HHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCc-HHHHHH-HhcCcchhhH
Confidence 345555555554442 2335666655554433334445555566666667775554442111 232222 3337778888
Q ss_pred hhhhhHHHhhhhHHHHHHHHhhhhHHH----HHHHHcCCCCcccccccccchhHHHHHHHHHHHhhc-CCCCcchhHHHH
Q 010928 152 LAIFPVMYLSGGTCVMLIITAGGNMET----LYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQI-LPNLNSVAKVSM 226 (497)
Q Consensus 152 ~~~~~~~~~~~g~~v~Y~i~~~~~l~~----i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~-l~~l~~l~~~s~ 226 (497)
+....-... .+++.......-.. ++....-.+ ++...++.+...++.++.+...++ ...-+.+++++-
T Consensus 132 ~sw~~Gw~~----~~g~~~~~aSi~~S~A~~i~~~v~l~n---p~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~ 204 (550)
T KOG1289|consen 132 ASWVTGWLN----YLGQATGVASITYSLAQLILGAVSLTN---PNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINS 204 (550)
T ss_pred HHHHHHHHH----HHHHHhhchhhhHHHHHHHHHHHhhcC---CCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 776543222 22222222222221 111111011 111222333333444443333331 224466777777
Q ss_pred HHHHHHHHHHHHHHhHhh--ccCCC--C-C-cccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCC
Q 010928 227 VGAITAVAYCTFIWALSI--NKGRS--N-G-VSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRN 300 (497)
Q Consensus 227 ~~~~~~~~~~~~v~~~~i--~~g~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~ 300 (497)
+++...++..++..+... ..+.. + + .-+......+-+....+.+.-++-.-...+.|-.....+-+|- ||
T Consensus 205 ~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~----~n 280 (550)
T KOG1289|consen 205 VSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET----KN 280 (550)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh----cc
Confidence 777666554443333222 22221 1 1 0011111222022245566666666677788888889999999 55
Q ss_pred CccccchhHHHHHHHHHHHHHhhh
Q 010928 301 PSCQTMWKGTIISYLLIAMCLFPL 324 (497)
Q Consensus 301 p~~~~~~~~~~~a~~~~~~~Y~~~ 324 (497)
+++. ..|++..+..+..++=..+
T Consensus 281 Ask~-aPrgIi~s~~i~~i~gw~~ 303 (550)
T KOG1289|consen 281 ASKA-APRGIISSIAIGFILGWII 303 (550)
T ss_pred hhhh-ccHHHHHHHHHHHHHHHHH
Confidence 6543 2466666665555444333
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.93 E-value=0.04 Score=57.98 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=79.8
Q ss_pred cCCCchHHHHHHHHHhhhhh-hhchHHHHHHhcChHHHHHHH--HHHHHHH-HHHHHHHHHchhhcCCCccccHHHHHHH
Q 010928 67 SRNGNIFYAVFHLISSGIGS-QALLLPVAFAALGWTWGVICL--SISFAWQ-LYTIWLLVILAESVPGTRYSRYLHLAVV 142 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~l--i~~~~ls-~~s~~lL~~~~~~~~~~~~~~y~~l~~~ 142 (497)
.|+.+++...+.+..+.+|+ ..++.|-...+.|+....... ...+.+. .+-+..+.+..++ .+ ..+.+|.-++
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~--~~T~~e~l~~ 116 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK-YN--AVTLNDMLRA 116 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC--CccHHHHHHH
Confidence 35567777777776666555 677788777777764211111 1111111 1222233333343 23 6799999999
Q ss_pred hcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchh
Q 010928 143 AFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVA 222 (497)
Q Consensus 143 ~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~ 222 (497)
-||++..+....+..+...++.+.+-+...+..++.+++ - +....+++..++++.... +.-++...
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g----i---------~~~~~iii~~~iv~iYt~-~GGl~av~ 182 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG----I---------SYETGLLIFGITVALYTA-FGGFRAVV 182 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C---------CHHHHHHHHHHHHHHHHH-hccHHHHH
Confidence 999765555444333333344444445555555554432 1 112222233333344444 77888888
Q ss_pred HHHHHHHHHHHHHH
Q 010928 223 KVSMVGAITAVAYC 236 (497)
Q Consensus 223 ~~s~~~~~~~~~~~ 236 (497)
+...+-.+.++...
T Consensus 183 ~TD~iQ~~i~~~~~ 196 (483)
T PRK09442 183 LTDALQGIVMLVGT 196 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 88766655544433
No 59
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.86 E-value=0.032 Score=56.79 Aligned_cols=309 Identities=15% Similarity=0.139 Sum_probs=151.6
Q ss_pred hHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchh
Q 010928 72 IFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKL 151 (497)
Q Consensus 72 ~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~ 151 (497)
|....+++.+-..|+.... .++..+++..++-.++...-+-+......+ ...++.-++|..||+++.++
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~----~Gl~~~v~sR~~FG~~Gs~~ 75 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGAD----TGLSAMGSLKLSLGSKGSVL 75 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cCcCHHHHHHHHHccchhhH
Confidence 5566777777777654321 555555555554433333323333333222 13588899999999985454
Q ss_pred hhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH
Q 010928 152 LAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAIT 231 (497)
Q Consensus 152 ~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~~~~~ 231 (497)
.. +.......|=-..=....++.+..+.+...+.+ +...+.+++.++..+.. ....+.++++..++...
T Consensus 76 ~~-~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~--------~~~~~~~i~~~l~~~~~--~~G~~~i~~~~~~~~~~ 144 (386)
T TIGR02358 76 PS-LLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE--------SPMLWILIVGILVTLWL--LSGPLAFVWLNNWSVWL 144 (386)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------chHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 43 344444455444545566777777766433221 11233333333333333 33556666666665555
Q ss_pred HHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHH-hhchhhHHhHHhhCCCCCCCCccccchhHH
Q 010928 232 AVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALA-FRGHNLVLEIQGTLPSSRRNPSCQTMWKGT 310 (497)
Q Consensus 232 ~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fa-f~~h~~i~~i~~~m~~~~k~p~~~~~~~~~ 310 (497)
.....+...+....+....+. .++ + .. ..+..++....-. -..-...++..+.. |+|++ .....
T Consensus 145 ~~i~~~~~~~~~~~~~~~~~~-~~~-~----~~---~s~~~~~~~~~~~~~swa~~~~DysRy~----k~~~~--~~~~~ 209 (386)
T TIGR02358 145 LLIATLWLLVVVFSKADLSEL-WNR-A----GD---MSFAVAVELVIAMPLSWLPLIADYTRFA----RNPRH--VFLGT 209 (386)
T ss_pred HHHHHHHHHHHHHhccchhhh-cCC-C----CC---ccHHHHHHHHHHHHHHHHHHccchhhhc----CCCcc--eehHH
Confidence 554443333322222211111 111 0 11 1223333222211 12334477777777 54433 23666
Q ss_pred HHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchHHHHHHHHh
Q 010928 311 IISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYV 390 (497)
Q Consensus 311 ~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~~~l~~~~~ 390 (497)
.++..+...+-..+|...-.+.++. |+.+-+.+. .....+-+...++...+-....++.--.+...+.
T Consensus 210 ~~G~~i~~~~~~~~G~~~~~a~~~~-----d~~~~~~~~-------g~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~ 277 (386)
T TIGR02358 210 VLGYFIGSCWMYFLGLAVTLATGQT-----DIISILAGA-------GLGIPALLIILLSTVTTTFMDIYSAAISTGNLLP 277 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-----CHHHHHHhc-------cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777778887666665543 232222111 1112333445555566666677777777666553
Q ss_pred hccCCCCCcchhhHHHHHHHHHHHHHHhh--ccchhHHHHhhhhhhhhh
Q 010928 391 SKKKQRCPGWVRAGIRLFFGGLTFFIAVA--FPFLGSLAPLIGGIALPL 437 (497)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~iA~~--ip~~~~il~l~Ga~~~~l 437 (497)
+.+ ++++.++ ..++..+++.. ...+.+++++.|...+++
T Consensus 278 -~~~----~~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~ 318 (386)
T TIGR02358 278 -RLK----VKHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPL 318 (386)
T ss_pred -hhc----chHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1122221 11222222222 345778888888776633
No 60
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.64 E-value=0.11 Score=54.66 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=87.3
Q ss_pred CCCchHHHHHHHHHhhhh-hhhchHHHHHHhcChHHHHHHHH---HHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHh
Q 010928 68 RNGNIFYAVFHLISSGIG-SQALLLPVAFAALGWTWGVICLS---ISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVA 143 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~li---~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~ 143 (497)
|+-+.+.......-+.++ ...+++|-...+.|+....+... ...+.-.+-...+.+..+ ..| ..|.+|.-++-
T Consensus 38 R~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~-~~~--~~T~~d~l~~R 114 (493)
T COG0591 38 RSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAK-ARG--ATTIPDFLEAR 114 (493)
T ss_pred CcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC--CccHHHHHHHH
Confidence 444444555555555555 88999999999999754444333 333344455556666553 334 67999999999
Q ss_pred cCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhH
Q 010928 144 FGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAK 223 (497)
Q Consensus 144 ~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~ 223 (497)
||+++.|.+..+..+...++-+..=++..+..++..+. . +.........+.+.+..++--+++..+
T Consensus 115 f~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g----i----------~~~~~~~~~~~~v~~Yt~~gG~~av~~ 180 (493)
T COG0591 115 FGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG----I----------SYVTGILIGALIVALYTFLGGLRAVVW 180 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----C----------CHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 99545666666666666566666666666666643322 1 111122222222222222667888888
Q ss_pred HHHHHHHHHH
Q 010928 224 VSMVGAITAV 233 (497)
Q Consensus 224 ~s~~~~~~~~ 233 (497)
+..+--..+.
T Consensus 181 Td~iqg~im~ 190 (493)
T COG0591 181 TDFIQGLIML 190 (493)
T ss_pred HHHHHHHHHH
Confidence 7766444443
No 61
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.58 E-value=0.14 Score=53.68 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=81.1
Q ss_pred cCCCchHHHHHHHHHhhhhhh-hchHHHHHHhcChHHHHHHHH--HHHHHHH-HHHHHHHHchhhcCCCccccHHHHHHH
Q 010928 67 SRNGNIFYAVFHLISSGIGSQ-ALLLPVAFAALGWTWGVICLS--ISFAWQL-YTIWLLVILAESVPGTRYSRYLHLAVV 142 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~li--~~~~ls~-~s~~lL~~~~~~~~~~~~~~y~~l~~~ 142 (497)
.|+.+++...+.+..+.+|++ .++.|-...+.|+........ ..+.+.. +-...+.+..++ .| ..|.+|.-++
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~T~~e~l~~ 115 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK-YN--AITINDVLKA 115 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC--CccHHHHHHH
Confidence 356778888888888877765 556787777778642111110 1111111 111222222332 23 6699999999
Q ss_pred hcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchh
Q 010928 143 AFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVA 222 (497)
Q Consensus 143 ~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~ 222 (497)
-||++..++...+..+...++...+-+...+..++.+++ - +....+++..++++.... ..-++...
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g----i---------~~~~~iii~~~iv~iYt~-~GG~~av~ 181 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG----L---------SYLTALFIFSSSVLIYTT-FGGFRAVA 181 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----C---------CHHHHHHHHHHHHHHHHH-hhhHHHHH
Confidence 999765555544444444355444445555555554432 1 111112222232333333 67888888
Q ss_pred HHHHHHHHHHHHHHH
Q 010928 223 KVSMVGAITAVAYCT 237 (497)
Q Consensus 223 ~~s~~~~~~~~~~~~ 237 (497)
++..+-.+.++...+
T Consensus 182 ~td~iQ~~v~~~~~~ 196 (471)
T TIGR02119 182 LTDAIQGIVMFTGTT 196 (471)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887766555544333
No 62
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.51 E-value=0.014 Score=59.96 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=71.7
Q ss_pred CCCchHHHHHHHHHhhhhh-hhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 68 RNGNIFYAVFHLISSGIGS-QALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
|+.+++...+.+..+.+|+ .+++.|-...+.|+.. ....+...........++.+-.++ .+ ..+.+|.-++-||+
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~-~~--~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR-SG--AVTIPEYLEKRYGS 81 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH-TT----SHHHHHHHHT-H
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc-cc--hhhhhhhhhhhcCC
Confidence 5567777777777777765 5778898888889753 222233233333333444443333 23 66999999999999
Q ss_pred cc-chhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHH
Q 010928 147 KL-GKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVS 225 (497)
Q Consensus 147 ~~-g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s 225 (497)
+. .+.+..+..+...+..+...+...+..++.+++ - +.....++..++.+.... .--++...+..
T Consensus 82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g----i---------~~~~~~~i~~~i~~iYt~-~GGl~av~~td 147 (406)
T PF00474_consen 82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG----I---------PYNTAILIVGVIVIIYTF-FGGLRAVAWTD 147 (406)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHTTC-TT------SHH
T ss_pred chhhhhhcccccchhhhhhhhccccccccchhhccc----h---------hhhHHHHHHHHHHHHhhh-hhhHhhhhHHH
Confidence 74 254444333333244445555555555554322 1 112222233333333333 66777777776
Q ss_pred HHHHHHHHH
Q 010928 226 MVGAITAVA 234 (497)
Q Consensus 226 ~~~~~~~~~ 234 (497)
.+-.+.++.
T Consensus 148 ~iQ~~i~~~ 156 (406)
T PF00474_consen 148 FIQGVIMII 156 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554443
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.45 E-value=0.11 Score=53.34 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=81.5
Q ss_pred CCCchHHHHHHHHHhhhh-hhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 68 RNGNIFYAVFHLISSGIG-SQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
|+.+++...+.+..+.+| ...++.|-...+.|+.. ....+..........++..+..++ .+ ..+.+|.-++-||+
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFIN-NG--AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-cC--CCchhHHHHHHhCc
Confidence 455666666666665555 45667888777778542 222222222223334444444443 23 66999999999998
Q ss_pred ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928 147 KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSM 226 (497)
Q Consensus 147 ~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~ 226 (497)
+..+.+..+..+...+..+.+-+...+..++.+++ - +...-.++...+++.... .--++...+...
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g----i---------~~~~~~ii~~~i~~~Yt~-~GG~~av~~Td~ 144 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITG----L---------DLYLSLLLLGAITILYTV-FGGLKAVVWTDT 144 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----c---------hHHHHHHHHHHHHHHHHH-HcchHHHHHHHH
Confidence 54665554444444455566666666666655432 1 011112222222233333 667888888776
Q ss_pred HHHHHHHH
Q 010928 227 VGAITAVA 234 (497)
Q Consensus 227 ~~~~~~~~ 234 (497)
+-.+.++.
T Consensus 145 iQ~~i~~~ 152 (407)
T TIGR00813 145 IQAVIMIL 152 (407)
T ss_pred HHHHHHHH
Confidence 66555544
No 64
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.099 Score=53.35 Aligned_cols=267 Identities=13% Similarity=0.110 Sum_probs=134.2
Q ss_pred HHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhc-CC
Q 010928 138 HLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQI-LP 216 (497)
Q Consensus 138 ~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~-l~ 216 (497)
.++|..||.+ |.++-.+.....++|-...-.+..++... . . ...+...|.++.++++.+...+ .|
T Consensus 85 i~sR~~fG~~-Gs~l~sll~~~~~iGW~~v~~~l~~~a~~---~-~---------~~~~~~~~ili~g~l~~l~~ifG~r 150 (442)
T COG1457 85 ILSRYPFGVK-GSILPSLLNGITLIGWFGVNVILSGIAIG---S-G---------TGLPVWAGILIIGVLMTLVTIFGYR 150 (442)
T ss_pred eeecccccch-hHHHHHHHHHHHHhhHHHHHHHHhccccc---c-C---------CCCcHHHHHHHHHHHHHHHHHHhHH
Confidence 4578889997 54444445555556655555554444310 0 0 1222355555555555444432 56
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhh-chhhHHhHHhhCC
Q 010928 217 NLNSVAKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFR-GHNLVLEIQGTLP 295 (497)
Q Consensus 217 ~l~~l~~~s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~-~h~~i~~i~~~m~ 295 (497)
-++.+.+.+..-....+.+.+..+... ++..... +.. .+.++.++..+++...-.+. .-....+..+-+
T Consensus 151 ~l~~l~~~a~~~~~~lf~~l~~~~~~~--~~~~~~~-~~~------~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~- 220 (442)
T COG1457 151 ALHKLERIAVPLLLLLFLYLLALLFRS--KGGLDAL-WVK------GPTSPLSFLSALSLVIGSFASWGPYAADYSRYA- 220 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--cccccee-ecc------CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc-
Confidence 666666666554444443333222211 1211111 111 12333344455544443333 345567777777
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHHhhhhheeecccCCcc-CCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhh
Q 010928 296 SSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKV-PVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSF 374 (497)
Q Consensus 296 ~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~-~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sy 374 (497)
|+|+.++.......+......+-.++|...-.+=|+.. . .+....+ | . +...+-+...++..++-
T Consensus 221 ---~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~--~~~~~~~----G----~-~g~~~~lil~l~~~ttN 286 (442)
T COG1457 221 ---PSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSI--ADVMLGL----G----G-FGLPAILILVLGTVTTN 286 (442)
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH--HHHHHhc----c----c-HHHHHHHHHHHHHHhcC
Confidence 44432333344455666666666777877777777665 3 2333322 1 1 34445555666666666
Q ss_pred hcchhchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHh----hccchhHHHHhhhhhhhhhHhhhhhHHHHHH
Q 010928 375 QIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAV----AFPFLGSLAPLIGGIALPLTYVYPCFMYILI 449 (497)
Q Consensus 375 pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~----~ip~~~~il~l~Ga~~~~l~filP~l~~l~~ 449 (497)
-..++..--.+.....+ .++..+.....+. +.+++|+ ++.+++.++.++|+...+...+.=+=+++..
T Consensus 287 ~~nlYsa~ls~~~i~~~-----l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~r 358 (442)
T COG1457 287 ANNLYSAGLSFANIIPK-----LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFIVR 358 (442)
T ss_pred cHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666665554431 2223444333332 3344443 3557888888888776644444333333333
No 65
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.33 Score=49.46 Aligned_cols=54 Identities=15% Similarity=-0.020 Sum_probs=41.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHHHhCC
Q 010928 399 GWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYILIKKP 452 (497)
Q Consensus 399 ~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~~~~~ 452 (497)
+.+|...+.+..+++.++.++..+...++.+.+.+.+ .+-+..+.++++...|+
T Consensus 324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 4566777777777766666666699999999999999 88777777777666554
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=97.00 E-value=0.53 Score=48.26 Aligned_cols=53 Identities=17% Similarity=-0.004 Sum_probs=28.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchhhhh
Q 010928 98 LGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAI 154 (497)
Q Consensus 98 ~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~ 154 (497)
.++..+++..++-..+...-+.+......+ ...++.-++|..||.++.++...
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k----~G~~~~v~sR~~FG~~Gs~l~~~ 91 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAK----TGLSTHLLARFSFGEKGSWLPSL 91 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCcCHHHHHHHHhchhHHHHHHH
Confidence 444555555444433333222223332222 14589999999999975554433
No 67
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.70 E-value=0.047 Score=53.79 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=68.7
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-chhhcCCCccccHHHHHHHhcCcccc
Q 010928 71 NIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVI-LAESVPGTRYSRYLHLAVVAFGPKLG 149 (497)
Q Consensus 71 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~-~~~~~~~~~~~~y~~l~~~~~G~~~g 149 (497)
+.+...-+=..++-|+|-+-=|-.-++-||+++.+++++-+++.---.+...- .+-|+. -.|.+|++++..||+.+
T Consensus 53 ~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~---G~Si~~i~~~~lG~~~~ 129 (376)
T PF02554_consen 53 NKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHK---GKSIGEIAGKYLGKRAK 129 (376)
T ss_pred chHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCC---CccHHHHHHHHHHHHHH
Confidence 34456667788899999999999999999999999988755544333322222 222222 34999999999999866
Q ss_pred hhhhhhhHHHhhhhHHHHHHHHhhhhH
Q 010928 150 KLLAIFPVMYLSGGTCVMLIITAGGNM 176 (497)
Q Consensus 150 ~~~~~~~~~~~~~g~~v~Y~i~~~~~l 176 (497)
++...++ +....-...++.....+.+
T Consensus 130 ~lf~~f~-~~~lilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 130 KLFLIFI-FFLLILVIAVFADVVANTF 155 (376)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 6665544 3333555556655555544
No 68
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.56 E-value=0.2 Score=51.18 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=50.4
Q ss_pred CCCchHHHHHHHHHhhhhhh-hchHHHHHHhcChHHHHHHHHHHHHHHHHH----HHHHHHchhhcCCCccccH-----H
Q 010928 68 RNGNIFYAVFHLISSGIGSQ-ALLLPVAFAALGWTWGVICLSISFAWQLYT----IWLLVILAESVPGTRYSRY-----L 137 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~li~~~~ls~~s----~~lL~~~~~~~~~~~~~~y-----~ 137 (497)
++.|.+++.+..+.+.+|+| |+++|-|.+..| ..++.++-+.+++..-+ +.+-.+.+++ ++ ..+| -
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~-~~--~g~~~GGP~y 120 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER-DA--DGVFRGGPMY 120 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee-CC--CCCEecChHH
Confidence 34788999999999999998 999999977776 44544444444433333 3333444332 22 2235 5
Q ss_pred HHHHHhcCcccchhh
Q 010928 138 HLAVVAFGPKLGKLL 152 (497)
Q Consensus 138 ~l~~~~~G~~~g~~~ 152 (497)
.+-+...||+.+.+.
T Consensus 121 yi~~gl~~k~lg~lf 135 (425)
T TIGR00835 121 YIKKGLGMRWLAVLF 135 (425)
T ss_pred HHHHHhCccHHHHHH
Confidence 676666666434433
No 69
>PRK12488 acetate permease; Provisional
Probab=96.44 E-value=1.7 Score=46.53 Aligned_cols=149 Identities=11% Similarity=0.097 Sum_probs=76.2
Q ss_pred cCCCchHHHHHHHHHhhhhhh-hchHHHHHHhcChHHHHHHHHHHHHHHHHH-HHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 67 SRNGNIFYAVFHLISSGIGSQ-ALLLPVAFAALGWTWGVICLSISFAWQLYT-IWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~li~~~~ls~~s-~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
.|+.+++...+.+..+.++++ .++.|-.....|+.. ... .+...+.+.- ..++.+--++ .+ ..|.+|.-++=|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~-~~g~~~g~~~~~~~~a~~lr~-~g--~~T~~d~l~~Rf 140 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLY-ALGVLAGWPIILFLIAERLRN-LG--KYTFADVVSYRL 140 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHH-HHHHHHHHHHHHHHHHHHHHH-CC--CcchHHHHHHHc
Confidence 356778877777777766655 578998888888742 211 1111112111 1223332222 23 568889888778
Q ss_pred CcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHH-HHHHHHhhcCCCCcchhH
Q 010928 145 GPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFT-CMAIAIAQILPNLNSVAK 223 (497)
Q Consensus 145 G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~l~l~~~l~~l~~l~~ 223 (497)
|.+.-|.+..+..+...+.-..+-+...+..++.+ .+- +..+.+++. ++.+.... .--++...+
T Consensus 141 ~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l----~gi----------~~~~~iii~~~i~~~Yt~-~GGm~av~~ 205 (549)
T PRK12488 141 AQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELL----FGI----------SYLYAVVIVGALMVLYVT-FGGMLATTW 205 (549)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCC----------CHHHHHHHHHHHHHHHHh-ccchhHHHH
Confidence 74435555444333332333333334444444433 222 122223323 33333333 677888888
Q ss_pred HHHHHHHHHHHH
Q 010928 224 VSMVGAITAVAY 235 (497)
Q Consensus 224 ~s~~~~~~~~~~ 235 (497)
...+-.+.++..
T Consensus 206 td~iQ~~im~~~ 217 (549)
T PRK12488 206 VQIIKAVLLLSG 217 (549)
T ss_pred HHHHHHHHHHHH
Confidence 877665555443
No 70
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.34 E-value=1.4 Score=44.53 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=44.7
Q ss_pred HHHHHhhhhhhhchHHHH-HHhcC--hHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchhhh
Q 010928 77 FHLISSGIGSQALLLPVA-FAALG--WTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLA 153 (497)
Q Consensus 77 ~~l~~~~iG~GiL~lP~a-f~~~G--~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~ 153 (497)
+.+..-.+|+|.|-.|-. -.++| |..+++..++.++..-..+.. +-...| -+|+++.+++ ||+.+.+..
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g---G~~~~l~~~~-g~~f~~lf~ 73 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG---GGYDSLSARI-GKVFGILFT 73 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC---CCHHHHHHHh-ChHHHHHHH
Confidence 456677899999998755 45555 677777777766655444433 211111 2788888875 676677665
Q ss_pred hh
Q 010928 154 IF 155 (497)
Q Consensus 154 ~~ 155 (497)
+.
T Consensus 74 ~~ 75 (378)
T TIGR00796 74 VI 75 (378)
T ss_pred HH
Confidence 43
No 71
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.20 E-value=1.8 Score=44.58 Aligned_cols=254 Identities=9% Similarity=0.006 Sum_probs=114.4
Q ss_pred HHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchhhh
Q 010928 74 YAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLA 153 (497)
Q Consensus 74 ~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~ 153 (497)
.-++|+-+-++|+|.+.+-... ...++.+++-.++....+.+-.+... +....|+.++|..||-.+.++-.
T Consensus 52 ~~~~nv~~~~~aa~~~~lGLS~-----~qallai~vG~~iv~i~m~Lng~~G~----~~gIpFpv~~RaSFGi~Ga~~p~ 122 (497)
T COG1953 52 GMVHNVPTYMLAAGLFELGLSP-----WQALLAILVGNLIVAIFMVLNGHAGS----KYGIPFPVLSRASFGIYGANFPA 122 (497)
T ss_pred HhhccHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHhccCccc----ccCCCchHHHHHHHhhhhhhHHH
Confidence 4445555566666665543222 22333333322232222222222211 33569999999999986444433
Q ss_pred hhhHH--HhhhhHHHHHHHHhhhhHHHHHHHHcCCCCc-cc---ccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 010928 154 IFPVM--YLSGGTCVMLIITAGGNMETLYKIACGGGST-CE---AKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMV 227 (497)
Q Consensus 154 ~~~~~--~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~-~~---~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~ 227 (497)
..-.+ +.-+|.-+. ..+..+..++....++... .+ ....+...|+..+..=.+-+..+.+..++++++-..
T Consensus 123 l~R~i~A~~WyGvqty---~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~ 199 (497)
T COG1953 123 LIRAIVAIVWYGVQTY---AGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETW 199 (497)
T ss_pred HHHHHHHHHHHHHHHH---HhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 32111 111232211 3344444455544433100 00 011123333332222222222236678888887766
Q ss_pred HHHHHHHHHHHHHhHhhccCCC-CCcccCCCCCCchhhhhHhhHHHHHHHHHHHhh-chhhHHhHHhhCCCCCCCCcccc
Q 010928 228 GAITAVAYCTFIWALSINKGRS-NGVSYSPSQESKSDMVEFGNIFNAIGKIALAFR-GHNLVLEIQGTLPSSRRNPSCQT 305 (497)
Q Consensus 228 ~~~~~~~~~~~v~~~~i~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~-~h~~i~~i~~~m~~~~k~p~~~~ 305 (497)
+-.++.+.+.-.++....+... ......+....+ ....++.+...+...+-.|. ...|+|+.-+.- |+|+...
T Consensus 200 a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~-~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa----~s~~~~~ 274 (497)
T COG1953 200 AGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVS-GSNSSWAFLAGIAAWVGFWATLALNIPDFTRFA----KSQKAQI 274 (497)
T ss_pred hchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCC-cchhHHHHHHHHHHHHHHHHHHhcCCchhhccc----CChhhhh
Confidence 6555544444333333333211 111111101111 33444555555554444443 356688888877 4443322
Q ss_pred chhHHHHHHHHHHHHHhhhh----heeecccCCccCCCcchhhhc
Q 010928 306 MWKGTIISYLLIAMCLFPLT----ITGFWAYGNKVPVNGGLLSAL 346 (497)
Q Consensus 306 ~~~~~~~a~~~~~~~Y~~~g----~~gy~~fG~~~~~~~~il~~~ 346 (497)
..-.++..+.+.+.-++| ...+..||+..-++-|++..+
T Consensus 275 --~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~ 317 (497)
T COG1953 275 --WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARF 317 (497)
T ss_pred --hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHh
Confidence 222345555555555444 446778999865434666655
No 72
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.15 E-value=2.4 Score=45.36 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=72.7
Q ss_pred CCCchHHHHHHHHHhhhh-hhhchHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 68 RNGNIFYAVFHLISSGIG-SQALLLPVAFAALGWTWGVICLSISFAWQL-YTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~li~~~~ls~-~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
|+.+++...+.+..+.++ ...++.|-...+.|+-. ....+. ..+.+ ....++.+-.++ .+ ..+.+|.-++=||
T Consensus 67 r~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~~g-~~~~~~i~~~~~a~~lrr-~g--~~T~~d~l~~Rf~ 141 (549)
T TIGR02711 67 GNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYSLG-FLVGWPIILFLIAERLRN-LG--RYTFADVASYRLK 141 (549)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHHH-HHHHHHHHHHHHHHHHHH-cC--CccHHHHHHHHcC
Confidence 556666666666666554 67888998777888642 221111 11111 122333333332 24 5699998887787
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHH-HHHHHHHhhcCCCCcchhHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVF-TCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~l~l~~~l~~l~~l~~~ 224 (497)
.+.-|.+..+..+..++.-.+.-+...+..++.++ +- ...+.+++ ..+.+.... .--++...+.
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~----gi----------~~~~~iii~~~i~~~Yt~-~GGm~av~~t 206 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF----GL----------NYHVAVVLVGILMVMYVL-FGGMLATTWV 206 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CC----------CHHHHHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 54445544433333323333334444555444332 21 12222322 233333333 6677777777
Q ss_pred HHHHHHHHH
Q 010928 225 SMVGAITAV 233 (497)
Q Consensus 225 s~~~~~~~~ 233 (497)
..+=.+.++
T Consensus 207 d~iQ~~im~ 215 (549)
T TIGR02711 207 QIIKAVLLL 215 (549)
T ss_pred HHHHHHHHH
Confidence 766544443
No 73
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=95.93 E-value=0.034 Score=57.71 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=30.6
Q ss_pred ccHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHH
Q 010928 134 SRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIA 183 (497)
Q Consensus 134 ~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~ 183 (497)
.++.-++|..||.+ |..+..+......+|=...-..+.++.+..+.+..
T Consensus 71 l~~~v~sR~~FG~~-Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 71 LPTMVLSRASFGYR-GSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp --HHHHTTTTS-TT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCchhcchhccCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 47888999999997 54444444445546655655667788888776644
No 74
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.78 E-value=0.57 Score=48.52 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-chhhcCCCccccHHHHHHHhcCcccch
Q 010928 72 IFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVI-LAESVPGTRYSRYLHLAVVAFGPKLGK 150 (497)
Q Consensus 72 ~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~-~~~~~~~~~~~~y~~l~~~~~G~~~g~ 150 (497)
.+...-+=.-++-|+|-+-=|---+|.||.+|.+.+++-.++.----+.++- .+-|+. -.|.+|++++.+|++.|.
T Consensus 54 k~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~---G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 54 KWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHG---GKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred chhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccC---CccHHHHHHHHhhhhHHH
Confidence 3455666677889999999999999999999999988865554433333333 223222 349999999999998666
Q ss_pred hhhhh
Q 010928 151 LLAIF 155 (497)
Q Consensus 151 ~~~~~ 155 (497)
.....
T Consensus 131 ~~~~~ 135 (575)
T COG1966 131 FFLLL 135 (575)
T ss_pred HHHHH
Confidence 55443
No 75
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=95.74 E-value=2.2 Score=45.84 Aligned_cols=167 Identities=16% Similarity=0.140 Sum_probs=81.8
Q ss_pred chHHHHHHHHHhhhhhhh-chHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhh--cCCCccccHHHHHHHhcCcc
Q 010928 71 NIFYAVFHLISSGIGSQA-LLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAES--VPGTRYSRYLHLAVVAFGPK 147 (497)
Q Consensus 71 s~~~a~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~--~~~~~~~~y~~l~~~~~G~~ 147 (497)
+..+...--+..++|.=+ +=|-|..--+|...+.+++.++++.++.|..-+...+.. .+. --+|--+. +.+|+.
T Consensus 116 t~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpa--GGsYfmIS-RsLGPE 192 (1075)
T KOG2082|consen 116 TLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPA--GGSYFMIS-RSLGPE 192 (1075)
T ss_pred eeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--CCeeEEEe-cccCcc
Confidence 333333444445555432 337888999999999999888888877777666554432 121 11454333 345776
Q ss_pred cchhhhhhhHHHhhhhHHHHHHHHhhhhHHH-HHHHH--cCCC--Ccccccccc-cchhHHHHHHHHH-HHhhcCCCCcc
Q 010928 148 LGKLLAIFPVMYLSGGTCVMLIITAGGNMET-LYKIA--CGGG--STCEAKSLT-GVEWFLVFTCMAI-AIAQILPNLNS 220 (497)
Q Consensus 148 ~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~-i~~~~--~~~~--~~~~~~~~~-~~~~~v~~~~~~l-~l~~~l~~l~~ 220 (497)
+|-.+..+..+-+ --+...|++..-+.+-. ++... .+.+ ....+..++ .+.+-.++.++.. +...-+|-.++
T Consensus 193 FGgAVGlcFYLgt-T~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk 271 (1075)
T KOG2082|consen 193 FGGAVGLCFYLGT-TVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNK 271 (1075)
T ss_pred ccceeeehhhhhh-HHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544322222 22233466554443322 33221 1111 011112222 2444333322221 11111566777
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 010928 221 VAKVSMVGAITAVAYCTFIWA 241 (497)
Q Consensus 221 l~~~s~~~~~~~~~~~~~v~~ 241 (497)
++.++..+++..++.+....+
T Consensus 272 ~A~vfL~CVILSIlaiyaG~i 292 (1075)
T KOG2082|consen 272 FAPVFLACVILSILAIYAGGI 292 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 777777666666554444333
No 76
>PRK15015 carbon starvation protein A; Provisional
Probab=95.65 E-value=0.19 Score=53.06 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-chhhcCCCccccHHHHHHHhcCcccchhh
Q 010928 74 YAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVI-LAESVPGTRYSRYLHLAVVAFGPKLGKLL 152 (497)
Q Consensus 74 ~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~-~~~~~~~~~~~~y~~l~~~~~G~~~g~~~ 152 (497)
.-.-+=..++-|+|-+-=|.--++.||+++.+.+++-.++.----....- .+.|+. -.|..|++++..|++.+...
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~---GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRD---GRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCC---CccHHHHHHHHhhHHHHHHH
Confidence 34445567889999999999999999999999988855444322222222 222222 34999999999999855554
Q ss_pred hhhhHHHhhhhHHHHHHHHhhhhH
Q 010928 153 AIFPVMYLSGGTCVMLIITAGGNM 176 (497)
Q Consensus 153 ~~~~~~~~~~g~~v~Y~i~~~~~l 176 (497)
..+ ++....-...++..++.+.+
T Consensus 164 li~-i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 164 LVA-CFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 443 33332333444444444433
No 77
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.63 E-value=2.8 Score=42.12 Aligned_cols=70 Identities=16% Similarity=0.078 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHchhhcCCCccccHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHH
Q 010928 103 GVICLSISFAWQLYTI-WLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNME 177 (497)
Q Consensus 103 gii~li~~~~ls~~s~-~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~ 177 (497)
.++..++.+.+..|-. .+..|..- .+| .+..|..++-+||++...... .....++...++-+..++.-++
T Consensus 14 ~Llw~lll~~~~~~~~q~~~~R~~~-~Tg---~~l~~~~~~~~g~~~~~~~~~-~~~l~~~~~~~~~~~g~a~al~ 84 (358)
T PF01566_consen 14 SLLWVLLLSNLLKYVFQEMAARLGI-VTG---KGLAEGIRERFGRGWAWFLWI-LIFLANIATQAAEIIGIAIALN 84 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hcC---CChhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433 34444433 233 277777888888876555443 2333334444444444444433
No 78
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=95.61 E-value=3.1 Score=42.41 Aligned_cols=299 Identities=12% Similarity=0.065 Sum_probs=140.4
Q ss_pred CCchHHHHHHHHHhhhhhh-hchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHch--hhcCCCccccHHHHHHHhcC
Q 010928 69 NGNIFYAVFHLISSGIGSQ-ALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILA--ESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 69 ~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~--~~~~~~~~~~y~~l~~~~~G 145 (497)
-.|...-+...+.+.+|-| +.-.||-..+.|-..-++..++..++--+ -.++.|.. ++..+....+|++++. +
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~Gi-Plli~Ef~iGr~~~~~~~~a~~~l~~---~ 83 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGI-PLLLAEFAIGRRGRKNAVGAFRKLAP---K 83 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhH-HHHHHHHHhhhhcCCChhHHHHHhcc---C
Confidence 3466677888888999877 45589988877754333332222222112 23344422 1111122346766665 4
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCC----Ccccc---cccccchhHHHHHHHHHHHhh--cCC
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGG----STCEA---KSLTGVEWFLVFTCMAIAIAQ--ILP 216 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~----~~~~~---~~~~~~~~~v~~~~~~l~l~~--~l~ 216 (497)
|+ .+++-.+.+.. ++..+.-|.++.|-.+..+.....+.- +.-.. ....+....+....+.+.+.. ..|
T Consensus 84 ~~-~~~~G~~gv~~-~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~ 161 (439)
T COG0733 84 KK-WEWIGWFGVLG-GFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSR 161 (439)
T ss_pred cc-chhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 53 45554543333 366788888988888887776654320 00000 000111111111111111111 123
Q ss_pred CCcc-hhHHHHHHHHHHHHHHHHHHhHhhc-cCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhh-HHhHHhh
Q 010928 217 NLNS-VAKVSMVGAITAVAYCTFIWALSIN-KGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNL-VLEIQGT 293 (497)
Q Consensus 217 ~l~~-l~~~s~~~~~~~~~~~~~v~~~~i~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~-i~~i~~~ 293 (497)
-+++ ..+.+-+=+-..++..++.+++++. .|..++.++--.++.+ ...++.-...++|...|+.+--.- +.+.-+.
T Consensus 162 GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s-~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSY 240 (439)
T COG0733 162 GVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFS-KLTDPKVWLAALGQAFFSLSLGFGIMITYSSY 240 (439)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHH-HcCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333 4444444343333333333344443 3334444432111111 223355678899999999885444 4444455
Q ss_pred CCCCCCCCccccchhHHHH--------HHHHHHHHHhhhhheeecccCCccCCCc-------chhhhcccccCCCCchHH
Q 010928 294 LPSSRRNPSCQTMWKGTII--------SYLLIAMCLFPLTITGFWAYGNKVPVNG-------GLLSALSQVHGHNTSKHV 358 (497)
Q Consensus 294 m~~~~k~p~~~~~~~~~~~--------a~~~~~~~Y~~~g~~gy~~fG~~~~~~~-------~il~~~~~~~~~~~~~~~ 358 (497)
+ +|+++-. +.... +......++-..+.+|+.. .+.++ ++.+.+ +-+...
T Consensus 241 L----~k~~~l~--~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~----~~GpgL~Fi~LP~if~~m------p~G~~~ 304 (439)
T COG0733 241 L----SKKSDLV--SSALSIVLLNTLISLLAGLVIFPALFSFGADA----SQGPGLVFIVLPAVFNQM------PLGTLF 304 (439)
T ss_pred c----Ccccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CCCCeeehhHHHHHHHhC------chhHHH
Confidence 6 2222221 22211 2233333444444444441 11112 333222 344555
Q ss_pred HHHHHHHHHHHHhhhhhcchhchHHHHHHHHh
Q 010928 359 MGTIYLLVLINSLSSFQIYAMPVFDNLEFQYV 390 (497)
Q Consensus 359 ~~i~~~~~~~~~~~sypl~~~p~~~~l~~~~~ 390 (497)
..+-.++++++-++|---+..+....+.+.+.
T Consensus 305 ~~lFFl~l~fAalTS~iSmlE~~va~l~~~~~ 336 (439)
T COG0733 305 GILFFLLLLFAALTSAISMLEVLVAALIDKFG 336 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56666666777777766666666666666554
No 79
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=95.25 E-value=5.3 Score=42.82 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=75.1
Q ss_pred cCCCchHHHHHHHHHhhhh-hhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 67 SRNGNIFYAVFHLISSGIG-SQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
.|+.+++...+.+..+.++ ...++.|-...+.|+..-...+-. ..-......++.+-.++ .+ ..|-+|.-++=||
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~-~~~~~~~~~~~~p~~rr-~~--~~T~~e~l~~Rf~ 106 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGW-TGGYVLLALLLAPYLRK-FG--KYTVPDFIGDRYY 106 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH-CC--CccHHHHHHHHhC
Confidence 3567888877777777775 467788877777786422121111 11111122344444343 23 5588887777788
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHH-HHHHHHHHHhhcCCCCcchhHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFL-VFTCMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~l~l~~~l~~l~~l~~~ 224 (497)
++..+++..+..+...+.-...-+...+..++.++ +. +..+.+ +..++.+.... +--++...+.
T Consensus 107 s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~----gi----------~~~~~iii~~~i~~iYt~-~GG~~aV~~T 171 (552)
T TIGR03648 107 SNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL----EV----------DFETGVFIGMAIVFFYAV-LGGMKGVTWT 171 (552)
T ss_pred CCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CC----------CHHHHHHHHHHHHHHHHH-hhhHHHHHHH
Confidence 65456555443333323333333444454444332 21 122222 23333333333 6677777777
Q ss_pred HHHHHHHHH
Q 010928 225 SMVGAITAV 233 (497)
Q Consensus 225 s~~~~~~~~ 233 (497)
-.+-.+.++
T Consensus 172 D~iQ~iim~ 180 (552)
T TIGR03648 172 QVAQYIVLI 180 (552)
T ss_pred HHHHHHHHH
Confidence 655544433
No 80
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.14 E-value=4.5 Score=41.45 Aligned_cols=330 Identities=16% Similarity=0.208 Sum_probs=147.9
Q ss_pred CchHHHHHHHHHhhhhhhhchHHHHH-HhcC--hHHHHHHHHHHHHHH-HHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 70 GNIFYAVFHLISSGIGSQALLLPVAF-AALG--WTWGVICLSISFAWQ-LYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 70 ~s~~~a~~~l~~~~iG~GiL~lP~af-~~~G--~~~gii~li~~~~ls-~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
...+..-+.+..-..|+|=|-.|-.. .++| |.++.+.+++.++.- ..+...+.+. | . +++++++++ |
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~-----~--~-~~~~l~~~v-~ 73 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS-----G--G-GIEDLASRV-G 73 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc-----C--C-CHHHHhccc-C
Confidence 34567788899999999999998654 3444 788888877766533 2222222211 1 1 788888876 4
Q ss_pred cccchhhhhhhHHHhhhhH--------HHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCC
Q 010928 146 PKLGKLLAIFPVMYLSGGT--------CVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPN 217 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~--------~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~ 217 (497)
|+.+.+... ..+.++|- .++|-+.+...++. +..+....+.+++..+.+.+++ |.
T Consensus 74 ~~f~~if~~--~i~l~IGP~~aiPRtaa~sfe~~i~p~~~~-------------~~~~~~~ifs~iFF~i~~~l~~--~p 136 (427)
T PF05525_consen 74 PKFALIFTI--LIYLSIGPLFAIPRTAAVSFEMGIAPFFPE-------------NSNISLLIFSIIFFAITYLLSL--NP 136 (427)
T ss_pred cHHHHHHHH--HHHHHHHhcccCcchhhhhHHHhhhccCCc-------------ccccchhhhhHHHHHHHHHHHh--ch
Confidence 444554432 23333332 22222222222110 0122223333344444444443 33
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhHhhcc--CCCCCcccCCCCCCch--hhhhHhhHHHHHHHHHHHhhchhhHHhHHhh
Q 010928 218 LNSVAKVSMVGAITAVAYCTFIWALSINK--GRSNGVSYSPSQESKS--DMVEFGNIFNAIGKIALAFRGHNLVLEIQGT 293 (497)
Q Consensus 218 l~~l~~~s~~~~~~~~~~~~~v~~~~i~~--g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~ 293 (497)
=|-+.++.-+=+-..+..++++++.++.+ |...+.+ ++..+..+ ...+.-+...+++-+.|+-. +..-.++
T Consensus 137 ~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~-~~y~~~~f~~Gf~eGY~TMD~laal~Fg~i----Ii~~i~~ 211 (427)
T PF05525_consen 137 SKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAPS-GAYASNPFFKGFLEGYQTMDALAALAFGII----IINAIRQ 211 (427)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccc-hhhhhhHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHH
Confidence 22223333111222222222333333333 2111111 00001110 11111234555666666432 2233333
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHHHhhhhheeecccC---CccCCCcchhhhcccc-cCCCCchHHHHHHHHHHHHH
Q 010928 294 LPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYG---NKVPVNGGLLSALSQV-HGHNTSKHVMGTIYLLVLIN 369 (497)
Q Consensus 294 m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG---~~~~~~~~il~~~~~~-~~~~~~~~~~~i~~~~~~~~ 369 (497)
..-+.++...+...++-.++.....++|...+.+|...-+ ++.+. +.++....+. -| +.-..+..+.+.++
T Consensus 212 ~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g-~~lL~~i~~~~~G----~~G~~ll~iiv~lA 286 (427)
T PF05525_consen 212 KGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDING-AELLSQIANHLFG----SAGQILLGIIVFLA 286 (427)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCH-HHHHHHHHHHHcC----hhHHHHHHHHHHHH
Confidence 3111111222223344445666667888887777766544 33442 3566555222 22 22223334444455
Q ss_pred HhhhhhcchhchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhh-hhHhhhhhHHHHH
Q 010928 370 SLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIAL-PLTYVYPCFMYIL 448 (497)
Q Consensus 370 ~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~-~l~filP~l~~l~ 448 (497)
-+++---+...+.+.+++.+. +.+..... .+.++.++++|.+ .++.++. ++. .+.++.|..+-+.
T Consensus 287 CLTTaIGL~~a~a~yf~~~~~-----kisY~~~v---~i~~i~S~~ian~--Gl~~Ii~----~s~PiL~~iYP~~IvLI 352 (427)
T PF05525_consen 287 CLTTAIGLISACAEYFSELFP-----KISYKVWV---IIFTIFSFIIANL--GLDQIIK----ISVPILMFIYPVAIVLI 352 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----ccChHHHH---HHHHHHHHHHHHh--CHHHHHH----HHHHHHHHHhHHHHHHH
Confidence 555555556666677666443 11111111 1122333333321 3566666 445 6888888877665
Q ss_pred H
Q 010928 449 I 449 (497)
Q Consensus 449 ~ 449 (497)
.
T Consensus 353 l 353 (427)
T PF05525_consen 353 L 353 (427)
T ss_pred H
Confidence 5
No 81
>PRK10484 putative transporter; Provisional
Probab=94.70 E-value=7.1 Score=41.54 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=45.1
Q ss_pred CCCchHHHHHHHHHhhh-hhhhchHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 68 RNGNIFYAVFHLISSGI-GSQALLLPVAFAALGWTWGVICLSISFAWQL-YTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~i-G~GiL~lP~af~~~G~~~gii~li~~~~ls~-~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
|+.+++...+.+..+.+ |...++.|-...+.|+.... ... .+.+.. ...+++.+-.++ .| ..|.+|.-++-||
T Consensus 38 R~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~-~~~~~~~~~~~~~~p~~~r-~~--~~T~~e~l~~Ryg 112 (523)
T PRK10484 38 RSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEV-TAAIALIILALIFLPRYLK-SG--ITTIPDFLEERYD 112 (523)
T ss_pred CCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHH-HHHHHHHHHHHHHHHHHHh-cC--CccHHHHHHHhcC
Confidence 56677766666666655 44566788777777864311 111 111111 122233322222 23 6689999999999
Q ss_pred cccchhhhh
Q 010928 146 PKLGKLLAI 154 (497)
Q Consensus 146 ~~~g~~~~~ 154 (497)
++..++...
T Consensus 113 ~~~~~~~~~ 121 (523)
T PRK10484 113 KTTRRIVSI 121 (523)
T ss_pred chhHHHHHH
Confidence 875555444
No 82
>PRK09395 actP acetate permease; Provisional
Probab=93.84 E-value=11 Score=40.39 Aligned_cols=147 Identities=11% Similarity=0.072 Sum_probs=71.2
Q ss_pred CCCchHHHHHHHHHhhhh-hhhchHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 68 RNGNIFYAVFHLISSGIG-SQALLLPVAFAALGWTWGVICLSISFAWQL-YTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~li~~~~ls~-~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
|+.+++...+.+..+.+| ...++.|-.....|+... ...+. ..+.. ....++.+-.++ .+ ..+++|.-++=||
T Consensus 69 r~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~-~~~~~-~~~g~~~~~~~~~~~~r~-~g--~~T~~d~l~~Ryg 143 (551)
T PRK09395 69 GGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGL-IYSIG-FLVGWPIILFLIAERLRN-LG--KYTFADVASYRLK 143 (551)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHH-HHHHH-HHHHHHHHHHHHHHHHhh-CC--CccHHHHHHHHcC
Confidence 556677666766666665 456788887778887432 11111 11111 112223332222 23 5799998888888
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHH-HHHHHHhhcCCCCcchhHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFT-CMAIAIAQILPNLNSVAKV 224 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~l~l~~~l~~l~~l~~~ 224 (497)
++.-|....+..+...+.-..+-+...+..++.+ .+- +..+.+++. ++.+.... .--++...+.
T Consensus 144 s~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~----~gi----------~~~~~ili~~~i~~iYt~-~GGm~av~~T 208 (551)
T PRK09395 144 QGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLL----FGL----------NYHVAVVLVGVLMMVYVL-FGGMLATTWV 208 (551)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCC----------CHHHHHHHHHHHHHHHHh-hcchHHHHHH
Confidence 5434444333322222222222233334434332 222 122222222 33333333 6677787777
Q ss_pred HHHHHHHHHH
Q 010928 225 SMVGAITAVA 234 (497)
Q Consensus 225 s~~~~~~~~~ 234 (497)
..+-.+.++.
T Consensus 209 D~iQ~iim~~ 218 (551)
T PRK09395 209 QIIKAVLLLS 218 (551)
T ss_pred HHHHHHHHHH
Confidence 7655444433
No 83
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=93.72 E-value=11 Score=40.05 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=52.7
Q ss_pred chHHHHHHHHHhhhhhh-hchHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 71 NIFYAVFHLISSGIGSQ-ALLLPVAFAALGWT----WGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 71 s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~----~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
|..+-+...+...+|.| +.-.||-..+-|-. +=.+.++++++=..+.=..+.+..++ +. ..-|++++...=|
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~--~~-~~~~~~~~p~~~g 82 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRS--GP-IGAWKRLCPIFKG 82 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TS-HHHS-HHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc-ccccccccccccc
Confidence 45577888899999998 77799987766632 22333333333333333444444432 21 2346566554312
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYK 181 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~ 181 (497)
.|... ++ .++..++.|.++++..+..++.
T Consensus 83 --iG~~~----~~-~~~~~~~yy~vi~~w~l~Y~~~ 111 (523)
T PF00209_consen 83 --IGYAM----VL-ISFLIAIYYSVIVAWALYYFFQ 111 (523)
T ss_dssp --HHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccccc----cc-cccccccccccccccccccccc
Confidence 22222 12 2244566677777776666554
No 84
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=93.43 E-value=12 Score=39.55 Aligned_cols=76 Identities=17% Similarity=0.071 Sum_probs=40.3
Q ss_pred CCCchHHHHHHHHHhhhhhh-hchHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHH-Hc---hhhcCCCccccHHHHHH
Q 010928 68 RNGNIFYAVFHLISSGIGSQ-ALLLPVAFAALGWTWGVICLSISFAWQ-LYTIWLLV-IL---AESVPGTRYSRYLHLAV 141 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~li~~~~ls-~~s~~lL~-~~---~~~~~~~~~~~y~~l~~ 141 (497)
|+.+++...+.+.-+.+++. .++.|-...+.|+... ...+...+. .....++. +. .++..| ..+.+|.-+
T Consensus 40 r~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~T~~e~l~ 115 (502)
T PRK15419 40 RSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISES--WIAIGLTLGAWINWKLVAGRLRVHTEYNNN--ALTLPDYFT 115 (502)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ceeHHHHHH
Confidence 56677766666666655554 5668888888887531 111111111 11111211 11 111223 568888888
Q ss_pred HhcCcc
Q 010928 142 VAFGPK 147 (497)
Q Consensus 142 ~~~G~~ 147 (497)
+=||++
T Consensus 116 ~Ry~~~ 121 (502)
T PRK15419 116 GRFEDK 121 (502)
T ss_pred HHhCCC
Confidence 888874
No 85
>PRK00701 manganese transport protein MntH; Reviewed
Probab=93.26 E-value=12 Score=38.88 Aligned_cols=18 Identities=0% Similarity=-0.140 Sum_probs=13.7
Q ss_pred ccHHHHHHHhcCcccchh
Q 010928 134 SRYLHLAVVAFGPKLGKL 151 (497)
Q Consensus 134 ~~y~~l~~~~~G~~~g~~ 151 (497)
.+..|++++-+||++...
T Consensus 94 ~~l~~~ir~~~~~~~~~~ 111 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWF 111 (439)
T ss_pred CCHHHHHHHHCCchHHHH
Confidence 378999999999864443
No 86
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=93.02 E-value=11 Score=38.83 Aligned_cols=265 Identities=14% Similarity=0.090 Sum_probs=116.8
Q ss_pred cCCCchHHHHHHHHHhhhhhhhchHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCc-cccHHHHHHHh
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALLLPVAFAALG--WTWGVICLSISFAWQLYTIWLLVILAESVPGTR-YSRYLHLAVVA 143 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G--~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~-~~~y~~l~~~~ 143 (497)
+|+=|++.-+.--....++.+.--+.-+--+.| |..+++.+.+-- .++...++-.. .+|.. ..+|+-..|..
T Consensus 53 ~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~---~~~~~f~~lns--~~G~~yhIsFpv~sR~s 127 (572)
T KOG2466|consen 53 RRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGY---LFTAIFLVLNS--RPGSDYHISFPVLSRSS 127 (572)
T ss_pred cccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHH---HHHHHHHHHcc--CCCcccccceeeeeeee
Confidence 444477766666666666666666666666777 455555433321 22222333222 34421 34777778888
Q ss_pred cCcccchhhhhhhHHHhhhhHHHHHHH---HhhhhHHHHHHHHcCCC----CcccccccccchhHHHHHHHHHHHhhcCC
Q 010928 144 FGPKLGKLLAIFPVMYLSGGTCVMLII---TAGGNMETLYKIACGGG----STCEAKSLTGVEWFLVFTCMAIAIAQILP 216 (497)
Q Consensus 144 ~G~~~g~~~~~~~~~~~~~g~~v~Y~i---~~~~~l~~i~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~l~l~~~l~ 216 (497)
||-. +...-.+. -...+|+=|-+ +.++..+.+++...++. ..-.....+...|+..+..=++-+++...
T Consensus 128 FGiy-gS~~pIi~---R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~ 203 (572)
T KOG2466|consen 128 FGIY-GSLWPIIN---RVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWF 203 (572)
T ss_pred hhhh-HhHHHHHH---HHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeec
Confidence 8875 33222221 11233444433 34555555555443321 11112233455565444332333333233
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhHhhcc-CCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhh-chhhHHhHHhhC
Q 010928 217 NLNSVAKVSMVGAITAVAYCTFIWALSINK-GRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFR-GHNLVLEIQGTL 294 (497)
Q Consensus 217 ~l~~l~~~s~~~~~~~~~~~~~v~~~~i~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~-~h~~i~~i~~~m 294 (497)
...+++++-....+.+....+-.++....+ +...+...++.. .+ .....|.+..++...+=.|. ...|.|..-+--
T Consensus 204 ~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st-~~-gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~ 281 (572)
T KOG2466|consen 204 PPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKST-VS-GSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFA 281 (572)
T ss_pred cHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCc-cc-ccchhHHHHHHHHHHHhccchhhccCchhHhhc
Confidence 444444443333333322222222222222 112222221111 11 22233444444444444443 345566666666
Q ss_pred CCCCCCCccccchhHH--HHHHHHHHHHHhhhhheeecccCCccCCCcchhhhc
Q 010928 295 PSSRRNPSCQTMWKGT--IISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSAL 346 (497)
Q Consensus 295 ~~~~k~p~~~~~~~~~--~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~ 346 (497)
|+|...-....+ -+.+.+..++=.+++..++..||.+.-.|-+++.++
T Consensus 282 ----ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 282 ----KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred ----CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 555333211111 123333333334445557788998765334666655
No 87
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=92.84 E-value=14 Score=38.80 Aligned_cols=80 Identities=11% Similarity=-0.071 Sum_probs=43.2
Q ss_pred cCCCchHHHHHHHHHhhhhh-hhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcC--CCccccHHHHHHHh
Q 010928 67 SRNGNIFYAVFHLISSGIGS-QALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVP--GTRYSRYLHLAVVA 143 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~--~~~~~~y~~l~~~~ 143 (497)
.|+.+++...+.+..+.+++ ..++.|-...+.|+.... ......+.......++.+-.++.. +.+..+-+|.-++=
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~-~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELW-IAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 35667777777777776654 467788777777874321 111111111222333332211111 12356889989988
Q ss_pred cCcc
Q 010928 144 FGPK 147 (497)
Q Consensus 144 ~G~~ 147 (497)
||++
T Consensus 114 yg~~ 117 (487)
T TIGR02121 114 FNDK 117 (487)
T ss_pred hCCC
Confidence 9875
No 88
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=92.13 E-value=16 Score=37.62 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=46.5
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHH-HhcC--hHHHHHHHHHHHHH-HHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 71 NIFYAVFHLISSGIGSQALLLPVAF-AALG--WTWGVICLSISFAW-QLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 71 s~~~a~~~l~~~~iG~GiL~lP~af-~~~G--~~~gii~li~~~~l-s~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
..+..-+.+..-..|+|=|-.|-.. .++| |.++.+.+++.++. -..+...+.+. .| +++++++++ ||
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~----~g----~~~~l~~rv-~~ 79 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV----GG----GVDSLSTPI-GK 79 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc----CC----CHHHHhhhc-ch
Confidence 5677889999999999999997654 4455 77777777665542 23333222222 12 788888875 44
Q ss_pred ccchhh
Q 010928 147 KLGKLL 152 (497)
Q Consensus 147 ~~g~~~ 152 (497)
+.+.+.
T Consensus 80 ~f~~~f 85 (439)
T PRK15433 80 VAGVLL 85 (439)
T ss_pred HHHHHH
Confidence 445544
No 89
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=91.45 E-value=0.6 Score=48.71 Aligned_cols=223 Identities=14% Similarity=0.184 Sum_probs=118.3
Q ss_pred HHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhh---cCCCccccHHHHHHHhcCcccch
Q 010928 74 YAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAES---VPGTRYSRYLHLAVVAFGPKLGK 150 (497)
Q Consensus 74 ~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~---~~~~~~~~y~~l~~~~~G~~~g~ 150 (497)
....|++.-|+ .|=++|...|+|+..+++++.+...++..|..=-....++ ..| -.|- +..+.+|+..|-
T Consensus 39 ~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G---g~yf-lis~slg~efgg 111 (643)
T KOG2083|consen 39 RCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG---GVYF-LISRSLGPEFGG 111 (643)
T ss_pred hhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC---cEEE-EEEecccccccc
Confidence 44556666555 4668999999999999999988877777666432222211 111 1222 233345666565
Q ss_pred hhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHHHHH
Q 010928 151 LLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAI 230 (497)
Q Consensus 151 ~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~~~~ 230 (497)
-+.++..+.+ .-+|..|.+..++...++++... . ..+.. +-.+.+++++.. +.-...|.+-+-++
T Consensus 112 sigiIy~f~~-aVa~am~~vgfaEsv~~l~~~~s-~------~~i~g----i~~vt~~ill~i---~~ag~~w~~k~q~~ 176 (643)
T KOG2083|consen 112 SIGIIYAFAN-AVATAMYVVGFAESVAHLFETES-K------EMIDG----IGSVTVLILLAI---NVAGVEWEAKLQIV 176 (643)
T ss_pred hhHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhcc-H------HHhcc----hhHHHHHHHHHh---hhccchhHHHHHHH
Confidence 5544433333 55577799999999999887642 1 11111 111222233333 44445555544333
Q ss_pred HHHHHHHHH----HhHhhccC-CCCC-ccc------CCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCC
Q 010928 231 TAVAYCTFI----WALSINKG-RSNG-VSY------SPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSR 298 (497)
Q Consensus 231 ~~~~~~~~v----~~~~i~~g-~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~ 298 (497)
..++.++.+ +...+..+ ...+ +.+ ++...+ ......++..+++++-+..+.-.=..+..++
T Consensus 177 ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~---~~~~~tfF~vf~vfFpaatgilaG~nisGdL---- 249 (643)
T KOG2083|consen 177 LLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPD---IDPGYTFFSVFAVFFPAATGILAGANISGDL---- 249 (643)
T ss_pred HHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCC---cCCCCceEeeeeeecchhhhhhccccccCCC----
Confidence 332222211 11111111 0000 111 110010 1111256677777777776666666777788
Q ss_pred CCCccccchhHHHHHHHHHHHHHhhhhh
Q 010928 299 RNPSCQTMWKGTIISYLLIAMCLFPLTI 326 (497)
Q Consensus 299 k~p~~~~~~~~~~~a~~~~~~~Y~~~g~ 326 (497)
|+|++. ..+....+....+.+|+.+..
T Consensus 250 ~~Pq~~-IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 250 KDPQKA-IPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred CCchhh-cccchhhhhhhhhhhhhhhhh
Confidence 666543 357778899999999975544
No 90
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=89.86 E-value=14 Score=39.73 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccchhHHHHHHHHHHHHHhhhhheeec
Q 010928 269 NIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFW 330 (497)
Q Consensus 269 ~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~ 330 (497)
++-..+|+++-+-.+...=-..-.|+ |+|++ .+.|...++...++++|+++.++--.
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgEL----k~PSk-SIP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGEL----KAPSK-SIPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccc----cCccc-cCCccchHHHHHHHHHHHHHHHHhcc
Confidence 44555666555444443333445566 78874 45788899999999999988766433
No 91
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=86.00 E-value=7.8 Score=39.22 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=37.6
Q ss_pred cccHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHH
Q 010928 133 YSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETL 179 (497)
Q Consensus 133 ~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i 179 (497)
..-..++++++||+. |..+....+...|++++++.....++.+..+
T Consensus 254 ~~~l~~~a~~~~G~~-G~~ll~i~v~lACLtT~iGli~~~a~~f~~~ 299 (378)
T TIGR00796 254 AQILSAYSQHLFGSL-GSFLLGLIITLACLTTAVGLTTACSEYFHKL 299 (378)
T ss_pred HHHHHHHHHHHcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446778999999996 6666667788889999999999988887654
No 92
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=83.71 E-value=56 Score=33.52 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=35.0
Q ss_pred cCCCchHHHHHHHHHhhhhhhhch-HHHHHHhcChHHHHHHHHHHHHHHH
Q 010928 67 SRNGNIFYAVFHLISSGIGSQALL-LPVAFAALGWTWGVICLSISFAWQL 115 (497)
Q Consensus 67 ~~~~s~~~a~~~l~~~~iG~GiL~-lP~af~~~G~~~gii~li~~~~ls~ 115 (497)
+++.|.+++.+.-+.+.+|+|=++ ..-|..-.|- .++.++-+++++..
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gm 64 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGM 64 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHH
Confidence 346789999999999999999665 7888876663 35666655555443
No 93
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=77.48 E-value=40 Score=34.65 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=93.4
Q ss_pred CccccchhHHHHHHHHHHH-HHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchh
Q 010928 301 PSCQTMWKGTIISYLLIAM-CLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAM 379 (497)
Q Consensus 301 p~~~~~~~~~~~a~~~~~~-~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~ 379 (497)
..+++-++++..+..+... -.++....++..|+.--+ ...-+-+++++ +.+ ....+......+...++|...+
T Consensus 218 ~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~--~~~~~il~~~~---~~~-~~l~~~~~~~~~~~~~~~~~~f 291 (415)
T COG0814 218 YMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGS--LVFGNILAAKE---QNI-SLLSALAGVINSPILSIALNIF 291 (415)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccHHHHHHccC---chH-HHHHHHHHhhcchHHHHHHHHH
Confidence 3344434435555555554 445777888888887666 33333334442 222 3333455556666699999999
Q ss_pred chHHHHHHHHhh----c------cCCCCCcchhhHHHHHHHHHHHHHHhhccc-hhHHHHhhhhhhh-hhHhhhhhHHHH
Q 010928 380 PVFDNLEFQYVS----K------KKQRCPGWVRAGIRLFFGGLTFFIAVAFPF-LGSLAPLIGGIAL-PLTYVYPCFMYI 447 (497)
Q Consensus 380 p~~~~l~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~iA~~ip~-~~~il~l~Ga~~~-~l~filP~l~~l 447 (497)
+++......+.. . .++...+..|..........+.+.+...|. +...++.+|++.. ..+-++|.++++
T Consensus 292 ~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~ 371 (415)
T COG0814 292 ALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFI 371 (415)
T ss_pred HHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 998776553221 0 111122333555566667888888888886 7888888998888 999999999999
Q ss_pred HHhCCC
Q 010928 448 LIKKPS 453 (497)
Q Consensus 448 ~~~~~~ 453 (497)
+-++..
T Consensus 372 ~p~~~~ 377 (415)
T COG0814 372 KPRKLI 377 (415)
T ss_pred HHHHhc
Confidence 886543
No 94
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=76.40 E-value=23 Score=36.35 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=40.4
Q ss_pred cccHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHH
Q 010928 133 YSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYK 181 (497)
Q Consensus 133 ~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~ 181 (497)
..-..+++++++|+. |.++..+.+...|+-++++-....+|.+++.++
T Consensus 260 ~~lL~~i~~~~~G~~-G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 260 AELLSQIANHLFGSA-GQILLGIIVFLACLTTAIGLISACAEYFSELFP 307 (427)
T ss_pred HHHHHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335778899999995 877777788889999999999999999887655
No 95
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=74.61 E-value=1.1e+02 Score=31.72 Aligned_cols=179 Identities=12% Similarity=0.009 Sum_probs=84.9
Q ss_pred cccHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHh
Q 010928 133 YSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIA 212 (497)
Q Consensus 133 ~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~ 212 (497)
..+++|....=++.+--|++..+..+...+--+++-++.++..+.-+++ .+ ...-.++.++++....
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g----v~---------~~vgv~ig~ilm~~Yv 169 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG----VP---------YHVGVVIGGILMMVYV 169 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----CC---------ceeehhhHhHHHHHHH
Confidence 5699997666665554666655443333344455556666666554433 20 0111222223333333
Q ss_pred hcCCCCcchhHHHHHHH-HHHHHHHHHHHhHhhccCCCC-----------Ccc-cCCCCCCchhhhhHhhHHHHHHHHHH
Q 010928 213 QILPNLNSVAKVSMVGA-ITAVAYCTFIWALSINKGRSN-----------GVS-YSPSQESKSDMVEFGNIFNAIGKIAL 279 (497)
Q Consensus 213 ~~l~~l~~l~~~s~~~~-~~~~~~~~~v~~~~i~~g~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~i~~f 279 (497)
. +--++...|...+-- ++++.+.+..+....+.+..+ ..+ .....+.-+...++.+++...-.+++
T Consensus 170 v-~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~ 248 (529)
T COG4147 170 V-LGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV 248 (529)
T ss_pred H-hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH
Confidence 3 778888888875533 333333333322232222111 010 00000000012233333333333444
Q ss_pred HhhchhhHHhHHhhCCCCCCCCccccchhHHHHHHHHHHHHHhhhhheeecc
Q 010928 280 AFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWA 331 (497)
Q Consensus 280 af~~h~~i~~i~~~m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 331 (497)
... -.|.+.-..= .-|+-+.-++++.++......+|+..-+.|+.+
T Consensus 249 GTA---gLPHil~RFf---Tvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 249 GTA---GLPHILMRFF---TVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred ccC---CCCeEEEEEE---ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3343332210 223444445899999999999999776666554
No 96
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=71.09 E-value=1.5e+02 Score=32.21 Aligned_cols=104 Identities=12% Similarity=0.028 Sum_probs=55.8
Q ss_pred chHHHHHHHHHhhhhhhhch-HHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 71 NIFYAVFHLISSGIGSQALL-LPVAFAALGW----TWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 71 s~~~a~~~l~~~~iG~GiL~-lP~af~~~G~----~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
+...-.+..++-.+|-|=.= .|+..-+-|- ++=+++++++|+=..|=-..+.+-..+ | ....+..++=..=|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~--g-~v~~wrri~Pif~G 115 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQ--G-PVSVWRRICPIFKG 115 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcC--C-hHHHHHHhChHhcC
Confidence 56788889999999988766 8988666664 344444444443333322233333221 1 12233333332223
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHc
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIAC 184 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~ 184 (497)
- |..... .. .-..+.|.++++-.+..++..+.
T Consensus 116 v--G~a~v~----~~-~~~~~Yy~viiaw~l~Yl~~sf~ 147 (629)
T KOG3660|consen 116 V--GWASVV----IS-ALLAIYYIVILAWALYYLFSSFT 147 (629)
T ss_pred c--cHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 2 332221 11 33367788888888887776554
No 97
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=70.70 E-value=1.4e+02 Score=31.30 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=50.3
Q ss_pred cHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHH--HHHHHHh
Q 010928 135 RYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFT--CMAIAIA 212 (497)
Q Consensus 135 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~l~l~ 212 (497)
-|+-++++.-|+ .|+.++.+.++...+|...+ +-.....+..-++...+-+ . +...+.++.. .++...+
T Consensus 163 l~pl~g~~~~g~-~g~~ID~l~i~a~~~Gvats-lGlg~~qi~~gl~~~~Gi~-----~--~~~~~~~ii~~~~~i~~~S 233 (485)
T PF02028_consen 163 LYPLLGDRINGP-LGKIIDILAIFATIFGVATS-LGLGVPQISAGLSSLFGIP-----N--TFGLQIIIIIVITVIFTIS 233 (485)
T ss_dssp CHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCTSS-----S--THHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCcccCc-chhhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHcCCC-----C--chHHHHHHHHHHHHHHHHH
Confidence 366777777676 59999888877775554444 4444444444445444331 1 1122222222 2223344
Q ss_pred hcCCCCcc-hhHHHHHHHHHHHHHHHHHH
Q 010928 213 QILPNLNS-VAKVSMVGAITAVAYCTFIW 240 (497)
Q Consensus 213 ~~l~~l~~-l~~~s~~~~~~~~~~~~~v~ 240 (497)
. ..-+++ +++.|-+.+.+.+...+.++
T Consensus 234 ~-~~Gl~kGIk~LS~~n~~l~~~ll~~vl 261 (485)
T PF02028_consen 234 A-VSGLDKGIKRLSNINVYLAFALLLFVL 261 (485)
T ss_dssp H-HTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 556644 67777666665554444433
No 98
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=63.35 E-value=1.8e+02 Score=29.65 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=36.9
Q ss_pred HHHHHhhhhhhhchHHHHHHhcC--hHHHHHHHHHHHHHHHHHHH-HHHHchhhcCCCccccHHHHHHHhcCcccchhhh
Q 010928 77 FHLISSGIGSQALLLPVAFAALG--WTWGVICLSISFAWQLYTIW-LLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLA 153 (497)
Q Consensus 77 ~~l~~~~iG~GiL~lP~af~~~G--~~~gii~li~~~~ls~~s~~-lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~ 153 (497)
+.+.-+-+|.|-+. +..++| +...+++.++.+.+..+-.. +-.|..- .+| .+..|++++.++|+ .++..
T Consensus 11 ~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~-vTg---~~l~~~~r~~~~~~-~~~~~ 82 (390)
T TIGR01197 11 FLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGV-VTG---LDLAEVCREHYPKV-PRITL 82 (390)
T ss_pred HHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhee-ecC---CCHHHHHHHHCCCc-hHHHH
Confidence 33444556666665 223333 34444555554444444332 2223222 223 48999999999984 55544
Q ss_pred hh
Q 010928 154 IF 155 (497)
Q Consensus 154 ~~ 155 (497)
..
T Consensus 83 ~~ 84 (390)
T TIGR01197 83 WI 84 (390)
T ss_pred HH
Confidence 43
No 99
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=62.70 E-value=17 Score=33.67 Aligned_cols=67 Identities=25% Similarity=0.344 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhccchhHHHHhh---------hhhhh-hhHhhhhhHHHHHHhCCC-C----cchhHHHHHHHHHHHHHHH
Q 010928 409 FGGLTFFIAVAFPFLGSLAPLI---------GGIAL-PLTYVYPCFMYILIKKPS-R----SGAMWWLNVGLGCLGTILS 473 (497)
Q Consensus 409 ~~~~~~~iA~~ip~~~~il~l~---------Ga~~~-~l~filP~l~~l~~~~~~-~----~~~~~~~~~~~i~~g~~~~ 473 (497)
..+..+++|..++.++-++.++ ||++| -+.++= |+.+-+.+ + ....+|+.|+++++|+++.
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLF 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHH
Confidence 3455566777777777766665 88888 877765 33332221 1 1123577899999999999
Q ss_pred HHHHHH
Q 010928 474 VMLVVA 479 (497)
Q Consensus 474 v~g~~~ 479 (497)
+-+++.
T Consensus 238 lr~~i~ 243 (262)
T KOG4812|consen 238 LRGFIN 243 (262)
T ss_pred HHHHHh
Confidence 888764
No 100
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=60.41 E-value=13 Score=24.70 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHhhhhheeecccCCccC
Q 010928 307 WKGTIISYLLIAMCLFPLTITGFWAYGNKVP 337 (497)
Q Consensus 307 ~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~ 337 (497)
..+..++..+..++..+.|..-|.+||...+
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 3566777888888888899999999998765
No 101
>CHL00020 psbN photosystem II protein N
Probab=60.24 E-value=11 Score=24.70 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHhhhhheeecccCCccC
Q 010928 308 KGTIISYLLIAMCLFPLTITGFWAYGNKVP 337 (497)
Q Consensus 308 ~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~ 337 (497)
.+..++..+..++..+.|..-|.+||...+
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 456677778888888889999999998765
No 102
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=55.47 E-value=1.4e+02 Score=30.48 Aligned_cols=147 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHH
Q 010928 91 LPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLII 170 (497)
Q Consensus 91 lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i 170 (497)
+....-.+|++.++.+-++-..+.+.+.---....+...| ..=..+..++.||+. |+++...++...|+-++++-+.
T Consensus 222 ~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG--~~IL~~~s~~~fG~~-G~~lL~~iv~lACLTTaiGLi~ 298 (431)
T COG1114 222 IIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANG--GQILSAYSQHLFGSY-GSILLGLIVFLACLTTAVGLIV 298 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccch--HHHHHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHhHhhccCCCC
Q 010928 171 TAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGAITAVAYCTFIWALSINKGRSN 250 (497)
Q Consensus 171 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~~~~~~~~~~~~v~~~~i~~g~~~ 250 (497)
..+|...+.+.... ...|..+++..-+..+ .-.++++-..|.=-....--..+..+...+.+...+
T Consensus 299 a~aefF~~~~p~~S------------Y~~~v~if~i~sflva--n~GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~k~~~ 364 (431)
T COG1114 299 ACAEFFSKLVPKLS------------YKTWVIIFTLISFLVA--NLGLEQIIKISVPVLTAIYPIAIALVLLSFARKLWK 364 (431)
T ss_pred HHHHHHHHhccccc------------HHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Q ss_pred Cccc
Q 010928 251 GVSY 254 (497)
Q Consensus 251 ~~~~ 254 (497)
..++
T Consensus 365 ~~~~ 368 (431)
T COG1114 365 NSKR 368 (431)
T ss_pred Ccch
No 103
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=54.28 E-value=1.2e+02 Score=24.79 Aligned_cols=62 Identities=13% Similarity=0.256 Sum_probs=27.2
Q ss_pred hhHhhhhhHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccCCCC
Q 010928 436 PLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLGTILSVMLVVAAAWNLADK-GLHANFFRPK 497 (497)
Q Consensus 436 ~l~filP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~~~si~~i~~~-~~~~~~~~~~ 497 (497)
.+...+|.+.....+-++.++..|+.-..++..+.++-+++....+.-...+ -+.-|.|.|+
T Consensus 55 ~l~~~i~~lal~vRRlhD~G~sg~~~~~~~~~~~~~ip~i~~i~~l~l~~~pg~~~~N~yG~~ 117 (120)
T PF05656_consen 55 ILLLFIPSLALTVRRLHDIGRSGWWILLPFVLLALLIPIIGIIVLLYLLFLPGQPGPNRYGPP 117 (120)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence 4455556654333332344444443333222223333344444444444444 3455667664
No 104
>PHA02764 hypothetical protein; Provisional
Probab=53.81 E-value=41 Score=32.88 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=41.7
Q ss_pred CCCchHHHHH-HHHHhhhhhhhchHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCC-ccccHHHHHHHh
Q 010928 68 RNGNIFYAVF-HLISSGIGSQALLLPVAFAAL--GWTWGVICLSISFAWQLYTIWLLVILAESVPGT-RYSRYLHLAVVA 143 (497)
Q Consensus 68 ~~~s~~~a~~-~l~~~~iG~GiL~lP~af~~~--G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~-~~~~y~~l~~~~ 143 (497)
|..+.+.+++ |+.+...|.++ +.|+=++.. |.. .+...++.++++.-......+...+.|+. ....| .+++
T Consensus 12 REvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVY---ISRA 86 (399)
T PHA02764 12 KSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAY---IRTA 86 (399)
T ss_pred eeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEE---hHHh
Confidence 3455565555 88777777755 556533333 322 22233333334433333333333322221 04456 7889
Q ss_pred cCcccchhhhhh
Q 010928 144 FGPKLGKLLAIF 155 (497)
Q Consensus 144 ~G~~~g~~~~~~ 155 (497)
||+.+|......
T Consensus 87 FGP~~GFLvG~a 98 (399)
T PHA02764 87 FSSKFYTIFGIS 98 (399)
T ss_pred hCccHHHHHHHH
Confidence 999767665443
No 105
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=52.04 E-value=41 Score=30.36 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=49.8
Q ss_pred hhHHHHhhhhhhh-hhHhhhhhHHHHHHhCCCC----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010928 423 LGSLAPLIGGIAL-PLTYVYPCFMYILIKKPSR----------SGAMWWLNVGLGCLGTILSVMLVVAAAWNLADK 487 (497)
Q Consensus 423 ~~~il~l~Ga~~~-~l~filP~l~~l~~~~~~~----------~~~~~~~~~~~i~~g~~~~v~g~~~si~~i~~~ 487 (497)
++...-+.|++.+ -+..++|+...+...+++- ++..-....+...+|++.++++.+.|...+.+-
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3445566788888 9999999999999977531 233446788888999999999999888887753
No 106
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=50.65 E-value=2.8e+02 Score=28.01 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=76.4
Q ss_pred CCchHHHHHHHHHhhhhh-hhchHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHchhhc-CCCccccHHHHHHHhcC
Q 010928 69 NGNIFYAVFHLISSGIGS-QALLLPVAFAALGWTWGVICLSISFAWQ-LYTIWLLVILAESV-PGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 69 ~~s~~~a~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~li~~~~ls-~~s~~lL~~~~~~~-~~~~~~~y~~l~~~~~G 145 (497)
+.+-+.-.+....+.+++ ..++=|-+-.+.|+.+ +++..+-+-+ +.+.-.+.+-..+. ++.+..+..|+-++=+-
T Consensus 40 smgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~ 117 (473)
T COG4145 40 SMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQ 117 (473)
T ss_pred cccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhc
Confidence 344444445555555544 3455677777777654 4444443333 33333443321111 11335688888777654
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVS 225 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s 225 (497)
.+.-.+.+.+..++..++.+++-.+..++.++..... + ...-.+++...+.+-.. +.-++.....-
T Consensus 118 s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi----------d---Y~tgL~ifa~~V~iYt~-fGGFRAvvltD 183 (473)
T COG4145 118 SRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI----------D---YTTGLLIFAVSVAIYTA-FGGFRAVVLTD 183 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC----------C---chhhHHHHHHHHHHHHh-hcceeeeehHH
Confidence 4456666666666666788888888888887754321 0 12223445544444444 55666655544
Q ss_pred HH
Q 010928 226 MV 227 (497)
Q Consensus 226 ~~ 227 (497)
.+
T Consensus 184 ~I 185 (473)
T COG4145 184 TI 185 (473)
T ss_pred HH
Confidence 33
No 107
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=48.23 E-value=13 Score=24.48 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhhhheeecccCCccC
Q 010928 309 GTIISYLLIAMCLFPLTITGFWAYGNKVP 337 (497)
Q Consensus 309 ~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~ 337 (497)
+...+..+..++-.+.|...|.+||...+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 44566677777777888888999997665
No 108
>PLN00151 potassium transporter; Provisional
Probab=48.08 E-value=4.5e+02 Score=29.58 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhchhhHHhHHhhC
Q 010928 272 NAIGKIALAFRGHNLVLEIQGTL 294 (497)
Q Consensus 272 ~~~~i~~faf~~h~~i~~i~~~m 294 (497)
..+|-++.|..+... ++.+|
T Consensus 348 ~~LGgVvLciTGaEA---LfADL 367 (852)
T PLN00151 348 SALGGCVLCATGSEA---MFADL 367 (852)
T ss_pred EEecceeeeeccchh---hhccc
Confidence 446666666666544 56777
No 109
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=46.73 E-value=31 Score=30.33 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=45.8
Q ss_pred cchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHH
Q 010928 148 LGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMV 227 (497)
Q Consensus 148 ~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~ 227 (497)
+|.++..+.+....++++..|-...++.-........ .-.+|.+++.++-=.++. +|.+..+.+-..+
T Consensus 68 ~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~Y-----------G~~~W~ivF~~lnP~fp~-~~~~~~l~~nTii 135 (173)
T PF11085_consen 68 LGNLIGIVFIGVFSIVAALLYYALLKKFKGPWPGILY-----------GLAWWAIVFFVLNPIFPM-IKPVTELDWNTII 135 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH-----------HHHHHHHHHHHhcccccC-ChhhhhCchhHHH
Confidence 4666666666666677777776665544322111111 113333333332222333 6777777777777
Q ss_pred HHHHHHHHHHHHHhHhhc
Q 010928 228 GAITAVAYCTFIWALSIN 245 (497)
Q Consensus 228 ~~~~~~~~~~~v~~~~i~ 245 (497)
..+|..+.--+.+.+++.
T Consensus 136 T~~CiyiLyGlFIGYSIs 153 (173)
T PF11085_consen 136 TTLCIYILYGLFIGYSIS 153 (173)
T ss_pred HHHHHHHHHHHHhceeeh
Confidence 777776555555555543
No 110
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=38.00 E-value=5.5e+02 Score=27.70 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccchhHHHH---HHHHHHHHHhhhhheeecccCC
Q 010928 271 FNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTII---SYLLIAMCLFPLTITGFWAYGN 334 (497)
Q Consensus 271 ~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~~~~~~---a~~~~~~~Y~~~g~~gy~~fG~ 334 (497)
+.......-.|+.|++...=+-.+ |+.++.+++... ...+...++...|.+-|..|.+
T Consensus 243 ~Gg~~~~l~~~~vnQ~~VQR~lsl------~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~ 303 (585)
T KOG2349|consen 243 FGGTIMWLSYYGVNQLIVQRYLSL------PSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTD 303 (585)
T ss_pred cCCcHHHHHHHhhhHHHHhHHhcc------ccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeeccc
Confidence 333444445566677766666666 333333355554 3333334555778888877753
No 111
>PRK09950 putative transporter; Provisional
Probab=37.82 E-value=5.2e+02 Score=27.39 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=32.2
Q ss_pred cccHHHHHHHhcCcc----cchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcC
Q 010928 133 YSRYLHLAVVAFGPK----LGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACG 185 (497)
Q Consensus 133 ~~~y~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~ 185 (497)
..+.++..+-.+|++ .|+.++.+.++.+.+|...+--.. ...+..-++...+
T Consensus 166 pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg-~~qi~~gl~~l~G 221 (506)
T PRK09950 166 GLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVT-AATFTRGLSALTG 221 (506)
T ss_pred CCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHcC
Confidence 457778888888753 578888888777766666654333 3333444444433
No 112
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=34.51 E-value=2.9e+02 Score=28.63 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=35.0
Q ss_pred cHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHH
Q 010928 135 RYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETL 179 (497)
Q Consensus 135 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i 179 (497)
-.....++.+|+. |.++-.+.+..-|+-++++-....++.+++.
T Consensus 266 il~~~~~~~~G~~-G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 266 ILHAYVQHTFGGG-GSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556788899995 7777777788888999999888888887654
No 113
>PRK09928 choline transport protein BetT; Provisional
Probab=32.42 E-value=7.2e+02 Score=27.42 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=52.1
Q ss_pred chHHHHHHHHHhhhhhhhchH----HHHHH-h--cCh-------HHHHHHHHHHHHHHHHHHHHHHHc-----hhhcCCC
Q 010928 71 NIFYAVFHLISSGIGSQALLL----PVAFA-A--LGW-------TWGVICLSISFAWQLYTIWLLVIL-----AESVPGT 131 (497)
Q Consensus 71 s~~~a~~~l~~~~iG~GiL~l----P~af~-~--~G~-------~~gii~li~~~~ls~~s~~lL~~~-----~~~~~~~ 131 (497)
|.++-...+..+-+|+|++-- |..-- . .|- -.+...-.+=+-+..++.+.++-. ..+ .+.
T Consensus 94 S~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr-~~~ 172 (679)
T PRK09928 94 SLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYR-YNL 172 (679)
T ss_pred CcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc-CCC
Confidence 455666778888888888743 22211 1 111 112222333233333333333332 111 122
Q ss_pred ccccHHHHHHHhcCcc----cchhhhhhhHHHhhhhHHHHHHHHhhhh
Q 010928 132 RYSRYLHLAVVAFGPK----LGKLLAIFPVMYLSGGTCVMLIITAGGN 175 (497)
Q Consensus 132 ~~~~y~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~v~Y~i~~~~~ 175 (497)
..+.+...+-++|++ +|+.++.+.++.+.+|...+--..+.+.
T Consensus 173 -pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi 219 (679)
T PRK09928 173 -PLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQL 219 (679)
T ss_pred -CCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245555555555532 5889988888888777776654444433
No 114
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=30.18 E-value=6.4e+02 Score=26.15 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=38.1
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhch-HHHHHHhcChHHHHHHHHHHHH---HHHHHHHHHHHc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALL-LPVAFAALGWTWGVICLSISFA---WQLYTIWLLVIL 124 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~-lP~af~~~G~~~gii~li~~~~---ls~~s~~lL~~~ 124 (497)
+++..|.+++...-+.+-+|+|=++ ..-|.+-.|- .++.++=++++ .+-|.=-.|...
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~ 120 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMATKFAESTLAQK 120 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456789999999999999999766 7788876663 24444444433 344444444443
No 115
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=29.50 E-value=7.2e+02 Score=26.50 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=26.9
Q ss_pred cHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHH
Q 010928 135 RYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETL 179 (497)
Q Consensus 135 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i 179 (497)
-..++-....||++...+ ...++...+..+++-++-.+......
T Consensus 326 p~~~i~~~~lg~k~~v~~-~~l~ii~~f~~gi~s~~a~SR~v~af 369 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFL-LSLIIIALFFMGISSLTASSRLVYAF 369 (550)
T ss_pred hHHHHHHHhcCCCceEeh-hHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 567778888999855333 33334444666666666666665543
No 116
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=29.25 E-value=6.8e+02 Score=26.14 Aligned_cols=37 Identities=16% Similarity=-0.028 Sum_probs=27.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhc--cchhHHHHhhhhhhh
Q 010928 399 GWVRAGIRLFFGGLTFFIAVAF--PFLGSLAPLIGGIAL 435 (497)
Q Consensus 399 ~~~~~~~~~~~~~~~~~iA~~i--p~~~~il~l~Ga~~~ 435 (497)
+.+|.+.|.+.++++.++++.. .+++.+.++.-.+-+
T Consensus 356 W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S 394 (503)
T KOG1291|consen 356 WLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQS 394 (503)
T ss_pred HHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHH
Confidence 3445788999999999999875 457777776655544
No 117
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=28.50 E-value=98 Score=26.85 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=23.4
Q ss_pred chHHHHHHHHHhhhhhhhchHHHHHHhcCh
Q 010928 71 NIFYAVFHLISSGIGSQALLLPVAFAALGW 100 (497)
Q Consensus 71 s~~~a~~~l~~~~iG~GiL~lP~af~~~G~ 100 (497)
-...+++.-+-+.+|.+.+..-|....-++
T Consensus 62 ~rRm~~~~GiP~~lG~~~f~~~y~l~~~~~ 91 (153)
T PF11947_consen 62 LRRMAVFVGIPTALGVAVFVVFYYLKSRQI 91 (153)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHhccc
Confidence 345788888888888888888888877774
No 118
>TIGR00909 2A0306 amino acid transporter.
Probab=28.17 E-value=6.5e+02 Score=25.57 Aligned_cols=46 Identities=7% Similarity=-0.089 Sum_probs=30.9
Q ss_pred cHHHHHHHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHH
Q 010928 135 RYLHLAVVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYK 181 (497)
Q Consensus 135 ~y~~l~~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~ 181 (497)
...++.++..|+.++.++ .+.....+++++.+.+...+..+..+-+
T Consensus 265 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLIL-TAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHHHhCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777777777544444 3445555688888888888888776543
No 119
>PRK05415 hypothetical protein; Provisional
Probab=27.22 E-value=4.5e+02 Score=26.20 Aligned_cols=49 Identities=18% Similarity=0.056 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Q 010928 73 FYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLV 122 (497)
Q Consensus 73 ~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~ 122 (497)
+.+...+....+|-+...+=-+|.+.-|+.. ....+.+++......++.
T Consensus 71 ~~~l~~l~~~~~~~~~~~i~~~~~~~~wlg~-~~~~~~~~~~~~~~~~~~ 119 (341)
T PRK05415 71 WGGLGLLGSLVVGQAVQWLRDAFQRSDWLGL-GAAVVGALIVLAGLGIVV 119 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3455666666777777778888999988743 444444444444444433
No 120
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=26.39 E-value=5.1e+02 Score=27.28 Aligned_cols=121 Identities=15% Similarity=0.242 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc-ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHH
Q 010928 102 WGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP-KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLY 180 (497)
Q Consensus 102 ~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~-~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~ 180 (497)
+++.+++-.+++.-++.++-..-.....+....+.++.....+.. +++.+...+ . +-.+..+++...|......
T Consensus 343 psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~~a~~~~l~~lP~~~i~~~~----~-lil~~~f~vTs~DS~~~~l 417 (485)
T PF02028_consen 343 PSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPEAALFAFLEQLPLSKILSIL----F-LILIFIFFVTSADSATYVL 417 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HHHHHHHHHHTSTTHHHHHHH----H-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchhhHHHHHHHHhhHHHHHHHH----H-HHHHHHHHHhcccHHHHHH
Confidence 344455555666666666555321100000122444444444432 234333221 1 3346677888888888777
Q ss_pred HHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHHHHH
Q 010928 181 KIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSMVGA 229 (497)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~~~~ 229 (497)
...+.+++. +++...+..|.++.+++.+.+.. ...++.++-.+.++-
T Consensus 418 a~~s~~~~~-ep~~~~ri~W~~~~~~~a~~ll~-~ggl~~lq~~~ii~~ 464 (485)
T PF02028_consen 418 AMLSSKGDE-EPPRWLRIFWGLIIGALAIVLLL-IGGLDALQSASIIGG 464 (485)
T ss_dssp HHHHCTTTS-SS-HHHHHHHHHHHHHHHHHHHH-HHSSHHHHHHHHHHH
T ss_pred HHHHcCCCC-CCchHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 776655311 12333456676666666555444 456777777665544
No 121
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=25.81 E-value=3e+02 Score=22.59 Aligned_cols=67 Identities=9% Similarity=-0.085 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHhhhhhhhchHHHHHHhc---ChHHHHHHHHHHHHHH----HHHHHHHHHchhhcCCCccccHHHH
Q 010928 70 GNIFYAVFHLISSGIGSQALLLPVAFAAL---GWTWGVICLSISFAWQ----LYTIWLLVILAESVPGTRYSRYLHL 139 (497)
Q Consensus 70 ~s~~~a~~~l~~~~iG~GiL~lP~af~~~---G~~~gii~li~~~~ls----~~s~~lL~~~~~~~~~~~~~~y~~l 139 (497)
..|..-+..+.=..+|+..+.+...+... |-..-...+++.|+++ .|-..++..+.+ |.+-.+|.++
T Consensus 39 ~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~r---g~~Gysf~~I 112 (115)
T PF05915_consen 39 IPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWR---GYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHc---CCCCCCHhhC
Confidence 35666666666667777766666443322 1111222333334444 345555555544 3444566654
No 122
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=22.56 E-value=4.3e+02 Score=25.37 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=29.2
Q ss_pred chhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhhhhHhhhhhHHHHHHhCCCCcchhHHHHHHHHHHH
Q 010928 400 WVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKPSRSGAMWWLNVGLGCLG 469 (497)
Q Consensus 400 ~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~i~~g 469 (497)
++..+...+.-+..+..-...++.+...++.=+=.+.+.=.+=++++++.+|.+|.....+...++++.|
T Consensus 196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G 265 (269)
T PF06800_consen 196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIG 265 (269)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHh
Confidence 3444443333333333333345555555444333333333444666666654332222223344444444
No 123
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.92 E-value=1.9e+02 Score=22.32 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccchhHHHH-HHHHHHHHHhhhhheeecccCCccC
Q 010928 270 IFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTII-SYLLIAMCLFPLTITGFWAYGNKVP 337 (497)
Q Consensus 270 ~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~~~~~~-a~~~~~~~Y~~~g~~gy~~fG~~~~ 337 (497)
-....|++..+-.|.....+..+.- .+|.+.. +|++.+ ++++. +-+++|++.|..||.-.+
T Consensus 13 ~vli~GIiLL~~ACIFAfidFSK~~----s~~~~~~-wRalSii~FIlG--~vl~lGilifs~y~~C~~ 74 (91)
T PHA02680 13 GVLICGVLLLTAACVFAFVDFSKNT----SNVTDYV-WRALSVTCFIVG--AVLLLGLFVFSMYRKCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccC----CCCcchh-HHHHHHHHHHHH--HHHHHHHHHHHHhcccCC
Confidence 3345666666666766666666644 4565555 556554 44333 334567888888884444
No 124
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=21.38 E-value=2.2e+02 Score=24.79 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=48.3
Q ss_pred cccchhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhch
Q 010928 303 CQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPV 381 (497)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~ 381 (497)
+++.+|.+.+..-...++..++|+..-..+-++.+.+ |+ .+ --.|+-.++.+++.++.+..+....+|.
T Consensus 43 ~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~-~f-yS--------lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 43 SKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIP-NM-YS--------LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC-cc-cc--------HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3444577788777777778888886655555544411 22 12 2368888899999999999999988886
No 125
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.20 E-value=1.5e+03 Score=27.28 Aligned_cols=22 Identities=5% Similarity=0.194 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhhhheeecc
Q 010928 310 TIISYLLIAMCLFPLTITGFWA 331 (497)
Q Consensus 310 ~~~a~~~~~~~Y~~~g~~gy~~ 331 (497)
+....++++.+|++++++.|..
T Consensus 25 ~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 3445566778899999999876
No 126
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=20.69 E-value=4.5e+02 Score=24.15 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhcchhchHHHHHHHH
Q 010928 355 SKHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQY 389 (497)
Q Consensus 355 ~~~~~~i~~~~~~~~~~~sypl~~~p~~~~l~~~~ 389 (497)
.+....-.++...++...++|...+-....+..-+
T Consensus 54 ~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgL 88 (215)
T TIGR00945 54 TEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGL 88 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34566778999999999999998876555555433
No 127
>PLN02680 carbon-monoxide oxygenase
Probab=20.57 E-value=7.1e+02 Score=23.32 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=46.1
Q ss_pred ccchhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhch
Q 010928 304 QTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPV 381 (497)
Q Consensus 304 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~ 381 (497)
++.+|.+.+..-...++...+|+.....|-++.+. .++. .-..|+-.++-+++.++.+..+....+|.
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~-----~nfy-----SlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGI-----DNFY-----SLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-----cccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 33457788888888888888888554444443331 2221 12368888888899999988888877775
No 128
>PF04193 PQ-loop: PQ loop repeat
Probab=20.39 E-value=2.3e+02 Score=19.77 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhchhhHHhHHhhCCCCCCCCccccchhHHHHHHHHHHHHHh
Q 010928 272 NAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQTMWKGTIISYLLIAMCLF 322 (497)
Q Consensus 272 ~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~ 322 (497)
..+|.+.....+-.-+|.+++.. |+++...+.........+..++++
T Consensus 3 ~~~g~i~~~~~~~~~lPQi~~~~----k~ks~~glS~~~~~l~~~g~~~~~ 49 (61)
T PF04193_consen 3 NILGIISIVLWIISFLPQIIKNY----KRKSTGGLSLWFLLLWLIGSILWV 49 (61)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH----HccccccccHHHHHHHHHHHHHHH
Confidence 34566666666777899999999 555444433333333333333333
Done!