Query 010928
Match_columns 497
No_of_seqs 211 out of 1345
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 17:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 7.5E-14 2.6E-18 143.5 24.4 361 66-454 6-380 (445)
2 3gia_A Uncharacterized protein 99.4 1.6E-10 5.6E-15 118.5 27.3 353 66-452 4-368 (444)
3 4djk_A Probable glutamate/gamm 99.0 1.1E-07 3.8E-12 99.1 27.8 292 66-384 9-315 (511)
4 2jln_A MHP1; hydantoin, transp 98.4 0.00013 4.4E-09 75.5 26.1 329 68-435 25-371 (501)
5 3dh4_A Sodium/glucose cotransp 97.5 0.066 2.3E-06 55.5 28.2 150 68-235 20-170 (530)
6 2xq2_A Sodium/glucose cotransp 97.2 0.099 3.4E-06 55.0 25.4 81 68-152 49-130 (593)
7 2a65_A Leutaa, Na(+):neurotran 93.9 6.4 0.00022 40.2 29.2 111 70-185 9-125 (519)
8 2wsw_A BCCT family betaine/car 61.6 74 0.0025 32.2 11.9 94 134-237 179-276 (509)
9 4ain_A Glycine betaine transpo 42.1 1.1E+02 0.0039 31.0 9.7 105 70-175 96-221 (539)
10 4b4a_A TATC, SEC-independent p 29.3 3.1E+02 0.011 24.6 11.1 94 356-451 59-176 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.61 E-value=7.5e-14 Score=143.54 Aligned_cols=361 Identities=15% Similarity=0.138 Sum_probs=197.0
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcC
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFG 145 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G 145 (497)
++|+.+.++.++..+++++|+|++.+|...++.|.. +++..++.++++......+.+...+.|+ .-.+.+..++.+|
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~--~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS--PGGSYAYARRCFG 82 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--TTTHHHHHHHHSC
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC--CCCchhhHHhHcC
Confidence 456789999999999999999999999999999964 7788888888888888888888776665 3366677899999
Q ss_pred cccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHH
Q 010928 146 PKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVS 225 (497)
Q Consensus 146 ~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s 225 (497)
|.+|....+...+.. .....++....++.+...++. +. .. ...+.+...++.+....-.+..|...+++
T Consensus 83 ~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~-~~--~~~~~~~~~~~~~~~~in~~g~~~~~~~~ 151 (445)
T 3l1l_A 83 PFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSYFFPI-------LK-DP--WVLTITCVVVLWIFVLLNIVGPKMITRVQ 151 (445)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTCGG-------GG-SH--HHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCcc-------cc-cc--HHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 987877766543333 333444444444443321110 00 00 01111111111111111134566666665
Q ss_pred HHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCCcccc
Q 010928 226 MVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNPSCQT 305 (497)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p~~~~ 305 (497)
.+.....+...+++++..+.....++.. ++... . ....+.++..++...+|+|.+...+....+|+ |||+ ++
T Consensus 152 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~-r~ 223 (445)
T 3l1l_A 152 AVATVLALIPIVGIAVFGWFWFRGETYM-AAWNV-S-GLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPK-RN 223 (445)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCCCCCC-CC-------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhhcc-cccCc-c-CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCcc-cc
Confidence 5444443333332222222111111111 10100 1 12235678899999999999999999999999 7774 45
Q ss_pred chhHHHHHHHHHHHHHhhhhheeecccCCccC--CCcchhhhcccccCCCCchHHHHHHHHHHHHHHhhhhhcchhchHH
Q 010928 306 MWKGTIISYLLIAMCLFPLTITGFWAYGNKVP--VNGGLLSALSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYAMPVFD 383 (497)
Q Consensus 306 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~--~~~~il~~~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~~p~~~ 383 (497)
..|++..+..++.++|+...+......+.+.. ++..+..-+++.. ..+...+..+...++.+.+.--..+...+
T Consensus 224 ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR 299 (445)
T 3l1l_A 224 VPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQ 299 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH----CTTHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999887766555554321 1112222222211 12344455666666666665555555555
Q ss_pred HHHHHHhhcc-CC---CCC--cchhhHHHHHHHHHHHHHHh--hccc----hhHHHHhhhhhhhhhHhhhhhHHHHHHhC
Q 010928 384 NLEFQYVSKK-KQ---RCP--GWVRAGIRLFFGGLTFFIAV--AFPF----LGSLAPLIGGIALPLTYVYPCFMYILIKK 451 (497)
Q Consensus 384 ~l~~~~~~~~-~~---~~~--~~~~~~~~~~~~~~~~~iA~--~ip~----~~~il~l~Ga~~~~l~filP~l~~l~~~~ 451 (497)
.+...-.++. ++ +.+ ...+... .+..+++.++.. ..|+ ++.+.++.+ ++..+.|.++++.+++.++
T Consensus 300 ~~~~~a~dg~lP~~~~~~~~~~~P~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~y~~~~~~~~~~r~ 377 (445)
T 3l1l_A 300 TAKAAADDGLFPPIFARVNKAGTPVAGL-IIVGILMTIFQLSSISPNATKEFGLVSSVSV-IFTLVPYLYTCAALLLLGH 377 (445)
T ss_dssp HHHHHHHTTSSCGGGGCCCTTCCCHHHH-HHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCcHHHHhcCCCCCCHHHH-HHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 5444221110 00 001 1111111 111111222222 2332 444444433 2227889999999999876
Q ss_pred CCC
Q 010928 452 PSR 454 (497)
Q Consensus 452 ~~~ 454 (497)
+++
T Consensus 378 ~~~ 380 (445)
T 3l1l_A 378 GHF 380 (445)
T ss_dssp SSS
T ss_pred cCc
Confidence 553
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.38 E-value=1.6e-10 Score=118.48 Aligned_cols=353 Identities=10% Similarity=0.045 Sum_probs=191.9
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHH-HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhc
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLP-VAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAF 144 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~ 144 (497)
++|+.+.++..+..+++++|+|++..| .+.+.+|- .+++..++.+++.......+.+...+.|+ .-..-+.+++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~--~Gg~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS--NAGPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC--TTTHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCcHHHhHHHHh
Confidence 356789999999999999999999976 44566666 57778888888888888888888776665 235667899999
Q ss_pred Cccc-chhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHH--HHHhhcCCCCcch
Q 010928 145 GPKL-GKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMA--IAIAQILPNLNSV 221 (497)
Q Consensus 145 G~~~-g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--l~l~~~l~~l~~l 221 (497)
|+++ +.++.....+.. ...+..+....++.+...+ +.. ....+..++..+. +....-.+..|..
T Consensus 81 G~~~~~g~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~in~~g~~~~ 147 (444)
T 3gia_A 81 GDNIITGALSILLWMSY-VISIALFAKGFAGYFLPLI----NAP--------INTFNIAITEIGIVAFFTALNFFGSKAV 147 (444)
T ss_dssp CSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHT----TCC--------CCHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh----CCC--------CchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9963 222222221211 3334445555555554322 110 1122211111111 1111113456666
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCCCCCcccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhhCCCCCCCC
Q 010928 222 AKVSMVGAITAVAYCTFIWALSINKGRSNGVSYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGTLPSSRRNP 301 (497)
Q Consensus 222 ~~~s~~~~~~~~~~~~~v~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~m~~~~k~p 301 (497)
.++..+.....+...+++++..+.....++ +.+ .. .+..+.+++.+++...++|.+...+....+|+ |||
T Consensus 148 ~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~--~~~---~~-~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P 217 (444)
T 3gia_A 148 GRAEFFIVLVKLLILGLFIFAGLITIHPSY--VIP---DL-APSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENP 217 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCGGG--TSC---CC-SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChhh--cCC---CC-CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCc
Confidence 666544444333332222222222211111 111 11 34455678888999999999999999999999 777
Q ss_pred ccccchhHHHHHHHHHHHHHhhhhheeecccCCccC--CCcchhhh-cccccCCCCchHHHHHHHHHHHHHHhhhhhcch
Q 010928 302 SCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVP--VNGGLLSA-LSQVHGHNTSKHVMGTIYLLVLINSLSSFQIYA 378 (497)
Q Consensus 302 ~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~--~~~~il~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~sypl~~ 378 (497)
+ ++..|++..+..++.++|+...+......+.+.- ++++.+.. ..+. .+.+...+..+..+++.+.+.--..
T Consensus 218 ~-r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~i~~~~~~~~~~~~~~~~ 292 (444)
T 3gia_A 218 K-KNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPF----LGNLGFLLISIGALFSISSAMNATI 292 (444)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4456999999999999999877665555443210 00011111 1111 1123334455555555555555555
Q ss_pred hchHHHHHHHHhhcc-CC---CCC-cchhhHHHHHHHHHHHHHHhhccchhHHHHhhhhhhhhhHhhhhhHHHHHHhCC
Q 010928 379 MPVFDNLEFQYVSKK-KQ---RCP-GWVRAGIRLFFGGLTFFIAVAFPFLGSLAPLIGGIALPLTYVYPCFMYILIKKP 452 (497)
Q Consensus 379 ~p~~~~l~~~~~~~~-~~---~~~-~~~~~~~~~~~~~~~~~iA~~ip~~~~il~l~Ga~~~~l~filP~l~~l~~~~~ 452 (497)
+..-+.+...-.++. ++ +.+ +.... ...+..+++.+++. ..+++.+.++.+ ++..+.|.++++.+++.+++
T Consensus 293 ~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~-a~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~r~~ 368 (444)
T 3gia_A 293 YGGANVAYSLAKDGELPEFFERKVWFKSTE-GLYITSALGVLFAL-LFNMEGVASITS-AVFMVIYLFVILSHYILIDE 368 (444)
T ss_dssp TTTHHHHHHHHHHSSCCSSCCTTSCCSCTH-HHHHHHHHHHHHHH-HSCHHHHHHHHH-HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHhCCCCCCCcH-HHHHHHHHHHHHHH-HcCHHHHHHHHH-HHHHHHHHHHHHHHHHhhhc
Confidence 555444444221110 00 000 01111 11111122222322 235776666543 22278888888888877654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.03 E-value=1.1e-07 Score=99.11 Aligned_cols=292 Identities=10% Similarity=0.056 Sum_probs=142.6
Q ss_pred ccCCCchHHHHHHHHHhhhhhhhchHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHchh--hcCCCccccHHHHHHH
Q 010928 66 ESRNGNIFYAVFHLISSGIGSQALLLPVAFAALGWTWGVICLSISFAWQ-LYTIWLLVILAE--SVPGTRYSRYLHLAVV 142 (497)
Q Consensus 66 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~gii~li~~~~ls-~~s~~lL~~~~~--~~~~~~~~~y~~l~~~ 142 (497)
.+|+.+.++.+...+++++| +.++|. .+..|.. +++..++.+++. ......+.+... +.| .. ..-..+++
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G--G~y~~~~~ 81 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG--GVFAWVSN 81 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC--ChhhhHHh
Confidence 45678999999999999986 667775 4667753 333333333333 225566666655 555 22 55567899
Q ss_pred hcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccc---hhHHHHHHHHHHHhhcCCCCc
Q 010928 143 AFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGV---EWFLVFTCMAIAIAQILPNLN 219 (497)
Q Consensus 143 ~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~l~l~~~l~~l~ 219 (497)
.+|+++|........+.. .....++.....+.+..+ ... +.+... .+.+...++.+....-.+..+
T Consensus 82 ~~g~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~------p~~~~~~~~~~~~~~~~~~~~~~in~~g~~ 150 (511)
T 4djk_A 82 TLGPRWGFAAISFGYLQI-AIGFIPMLYFVLGALSYI----LKW------PALNEDPITKTIAALIILWALALTQFGGTK 150 (511)
T ss_dssp HHCHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTT----TTC------GGGTSCSSHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH----hcC------cccccCcHHHHHHHHHHHHHHHHHHHhChH
Confidence 999987765544332222 323333333333333211 101 111111 112111111111111145666
Q ss_pred chhHHHHHHHHH-HHHHHHHHHhHhh---ccCCCCCc--ccCCCCCCchhhhhHhhHHHHHHHHHHHhhchhhHHhHHhh
Q 010928 220 SVAKVSMVGAIT-AVAYCTFIWALSI---NKGRSNGV--SYSPSQESKSDMVEFGNIFNAIGKIALAFRGHNLVLEIQGT 293 (497)
Q Consensus 220 ~l~~~s~~~~~~-~~~~~~~v~~~~i---~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~ 293 (497)
...++..+.... .+...+++++..+ ..+...+. ++.+.. ......+...++...+++|.+...+....+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E 226 (511)
T 4djk_A 151 YTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFF----PDFSKVGTLVVFVAFILSYMGVEASATHVNE 226 (511)
T ss_dssp SHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCC----CCTTSTTTTTTHHHHHHHHTTGGGGTGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccC----CCcccchHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 666665443322 1111111111111 12211111 111110 0011112335677889999999999999999
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHHHhhhhheeecccCCccCCCc-chhhhcccccCCCC--chHHHHHHHHHHHHHH
Q 010928 294 LPSSRRNPSCQTMWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNG-GLLSALSQVHGHNT--SKHVMGTIYLLVLINS 370 (497)
Q Consensus 294 m~~~~k~p~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~-~il~~~~~~~~~~~--~~~~~~i~~~~~~~~~ 370 (497)
+ |||+ ++..|++..+..+++++|++..+......+++..... .....+.+..+... ..+...+..+..+++.
T Consensus 227 ~----k~P~-k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 301 (511)
T 4djk_A 227 M----SNPG-RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGV 301 (511)
T ss_dssp S----SCCT-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHH
T ss_pred c----cCcc-cchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 9 7775 4557999999999999999888776666665432110 11111111001111 2355555666666666
Q ss_pred hhhhhcchhchHHH
Q 010928 371 LSSFQIYAMPVFDN 384 (497)
Q Consensus 371 ~~sypl~~~p~~~~ 384 (497)
+.+.--.....-+.
T Consensus 302 ~~~~~~~~~~~sR~ 315 (511)
T 4djk_A 302 LAEIASWIVGPSRG 315 (511)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 65544444433333
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.37 E-value=0.00013 Score=75.53 Aligned_cols=329 Identities=9% Similarity=0.007 Sum_probs=152.0
Q ss_pred CCCchHHHHHHHHHhhhhhhhchHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 68 RNGNIFYAVFHLISSGIGSQALLLPVAFAA-LGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG~GiL~lP~af~~-~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
|+.+++.-...-+...++.+.+.+...+.. .++..+++.+++..++...-+.+......+. ..+|..+.|..||+
T Consensus 25 R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~----Gl~~~v~~R~~FG~ 100 (501)
T 2jln_A 25 RSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW----GINFTVAARMPFGI 100 (501)
T ss_dssp CCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH----CCCHHHHTTTTSCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc----CCChhhhhHhhcch
Confidence 445555444444454444444444433332 3355566665555554444444444444431 33699999999999
Q ss_pred ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928 147 KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSM 226 (497)
Q Consensus 147 ~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~ 226 (497)
++.++... ...+.++|-...-....++.+..++....+.. +...+.+++.++.++.. +...+.+.++..
T Consensus 101 ~Gs~i~~l-l~~i~~igw~~v~~~~gg~al~~~~~~~~g~~--------~~~v~~~i~~~l~~~~~--~~G~~~i~~~~~ 169 (501)
T 2jln_A 101 RGSLIPIT-LKALLSLFWFGFQTWLGALALDEITRLLTGFT--------NLPLWIVIFGAIQVVTT--FYGITFIRWMNV 169 (501)
T ss_dssp TTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHH--TTHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--------hHHHHHHHHHHHHHHHH--HhCHHHHHHHHH
Confidence 85665544 44455466666666677888877665433220 01223333444333333 456677776666
Q ss_pred HHHHHHHHHHHHHHhHhhccCCC--CCcccCCCCCCchhhhhHhhHHHHHHHH-HHHhhchhhHHhHHhhCCCCCCCCcc
Q 010928 227 VGAITAVAYCTFIWALSINKGRS--NGVSYSPSQESKSDMVEFGNIFNAIGKI-ALAFRGHNLVLEIQGTLPSSRRNPSC 303 (497)
Q Consensus 227 ~~~~~~~~~~~~v~~~~i~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~faf~~h~~i~~i~~~m~~~~k~p~~ 303 (497)
+.....+...+...+..+.+... .+....+ .....+.+..++... .+.-....+.++..+.+ |+++.
T Consensus 170 ~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~------~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~----~~~~~ 239 (501)
T 2jln_A 170 FASPVLLAMGVYMVYLMLDGADVSLGEVMSMG------GENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC----KVDPN 239 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCC------CSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB----CCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhhccC------CccchHHHHHHHHHHHHHHHHHHhccCcccccC----CCCcc
Confidence 65544443333333322222111 1110000 001122344444332 22223346788999999 33333
Q ss_pred ---cc-------chhHHHHHHHHHHHHHhhhhheeecccCCccCCCcchhhhcccccCCCCchHHHHHHH-HHHHHHHhh
Q 010928 304 ---QT-------MWKGTIISYLLIAMCLFPLTITGFWAYGNKVPVNGGLLSALSQVHGHNTSKHVMGTIY-LLVLINSLS 372 (497)
Q Consensus 304 ---~~-------~~~~~~~a~~~~~~~Y~~~g~~gy~~fG~~~~~~~~il~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~ 372 (497)
++ ......++..+...+..++|...-.+.+...+ .+++... . +.+.++..++- +.+.++.+.
T Consensus 240 ~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp--~~~l~~~--l---~~~~~~~~~~~~~~~~la~i~ 312 (501)
T 2jln_A 240 ASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNP--VIAITEV--V---GGVSIPMAILFQVFVLLATWS 312 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCH--HHHHHHH--H---TCCCHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCH--HHHHHHH--h---ccchHHHHHHHHHHHHHHHHH
Confidence 11 11223345555555555555543222222222 2333321 1 11122133333 445555544
Q ss_pred hhhc-chhchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhhc--cchhHHHHhhhhhhh
Q 010928 373 SFQI-YAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVAF--PFLGSLAPLIGGIAL 435 (497)
Q Consensus 373 sypl-~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~i--p~~~~il~l~Ga~~~ 435 (497)
+--. ..++.-..+...+. +..++ ++. ..+..++.++++... ..+.+++++.|.+.+
T Consensus 313 tn~~~n~ys~~~~l~~~~~----~~i~~-~~~--~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~ 371 (501)
T 2jln_A 313 TNPAANLLSPAYTLCSTFP----RVFTF-KTG--VIVSAVVGLLMMPWQFAGVLNTFLNLLASALG 371 (501)
T ss_dssp THHHHHTHHHHHHHHHHST----TTCCH-HHH--HHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTH
T ss_pred HHHHhhHHHHHHHHHHhCc----cccch-hHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4443 56666666666432 11111 111 112223333333322 346777777777766
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.52 E-value=0.066 Score=55.53 Aligned_cols=150 Identities=13% Similarity=0.041 Sum_probs=67.7
Q ss_pred CCCchHHHHHHHHHhhhh-hhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 68 RNGNIFYAVFHLISSGIG-SQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
|+.+++...+.+..+.++ ..++++|-...+.|+......... ++........+....++ .+ ..|.+|.-++-||+
T Consensus 20 R~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~-~~--~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 20 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE-KG--IYTIPEFVEKRFNK 95 (530)
T ss_dssp SCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH-TT--CCSHHHHHHHHTCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH-cC--CccHHHHHHHHcCc
Confidence 566777776666665554 467789988888887532211111 00001112222222232 23 67999999999999
Q ss_pred ccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHHHHHHHHHhhcCCCCcchhHHHH
Q 010928 147 KLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVFTCMAIAIAQILPNLNSVAKVSM 226 (497)
Q Consensus 147 ~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~l~~~l~~l~~l~~~s~ 226 (497)
+.+.+...+.++...+..+.+-+...+..++ ...+- +..+.+++..++..+...+--++...+.-.
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~----~~~Gi----------~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~ 161 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALE----TILGI----------PLMYSILGLALFALVYSIYGGLSAVVWTDV 161 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH----HHTTC----------CHHHHHHHHHHHHHHTTC------CCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCC----------CHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 7444433322211111112222222233333 23222 122233333333233333667888877776
Q ss_pred HHHHHHHHH
Q 010928 227 VGAITAVAY 235 (497)
Q Consensus 227 ~~~~~~~~~ 235 (497)
+-.+.++..
T Consensus 162 iQ~~im~~g 170 (530)
T 3dh4_A 162 IQVFFLVLG 170 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.22 E-value=0.099 Score=55.01 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=43.4
Q ss_pred CCCchHHHHHHHHHhhhh-hhhchHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHchhhcCCCccccHHHHHHHhcCc
Q 010928 68 RNGNIFYAVFHLISSGIG-SQALLLPVAFAALGWTWGVICLSISFAWQLYTIWLLVILAESVPGTRYSRYLHLAVVAFGP 146 (497)
Q Consensus 68 ~~~s~~~a~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~li~~~~ls~~s~~lL~~~~~~~~~~~~~~y~~l~~~~~G~ 146 (497)
|+.+++...+.+..+.++ ...++.|-...+.|+......... ++........+..-.++ .+ ..|.+|.-++-||+
T Consensus 49 R~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r-~~--~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 49 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE-KG--IYTIPEFVEKRFNK 124 (593)
T ss_dssp --CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH-TT--CCSHHHHHHHHTCH
T ss_pred CCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh-CC--CCCcHHHHHHHccC
Confidence 556777777777655554 455789988888886422111110 00001112222222232 23 66999999998998
Q ss_pred ccchhh
Q 010928 147 KLGKLL 152 (497)
Q Consensus 147 ~~g~~~ 152 (497)
+.+.+.
T Consensus 125 ~~~~~~ 130 (593)
T 2xq2_A 125 KLKTIL 130 (593)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 744443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=93.91 E-value=6.4 Score=40.21 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=60.4
Q ss_pred CchHHHHHHHHHhhhhhh-hchHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHchh-hcCCCccccHHHHHHHh
Q 010928 70 GNIFYAVFHLISSGIGSQ-ALLLPVAFAALGW----TWGVICLSISFAWQLYTIWLLVILAE-SVPGTRYSRYLHLAVVA 143 (497)
Q Consensus 70 ~s~~~a~~~l~~~~iG~G-iL~lP~af~~~G~----~~gii~li~~~~ls~~s~~lL~~~~~-~~~~~~~~~y~~l~~~~ 143 (497)
+|...-++..+.+.+|-| +.=.||-..+-|- ++=+++++++|+=-++.=..+.|-.. +..+.....|++++
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~--- 85 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLW--- 85 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHS---
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhc---
Confidence 355688888999999999 6679999888873 33344444444333333344444211 11111122344443
Q ss_pred cCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcC
Q 010928 144 FGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACG 185 (497)
Q Consensus 144 ~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~ 185 (497)
.++..+.+-... +..++..++-|.++++-.+..++..+.+
T Consensus 86 -~~~~~~giG~~~-v~~~~~i~~yY~vi~gW~l~Y~~~s~~~ 125 (519)
T 2a65_A 86 -RNRFAKILGVFG-LWIPLVVAIYYVYIESWTLGFAIKFLVG 125 (519)
T ss_dssp -CSHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCcCCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 221122233322 2223666777888888888777666543
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=61.56 E-value=74 Score=32.16 Aligned_cols=94 Identities=15% Similarity=-0.032 Sum_probs=51.2
Q ss_pred ccHHHHH-HHhcCcccchhhhhhhHHHhhhhHHHHHHHHhhhhHHHHHHHHcCCCCcccccccccchhHHHH--HHHHHH
Q 010928 134 SRYLHLA-VVAFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGNMETLYKIACGGGSTCEAKSLTGVEWFLVF--TCMAIA 210 (497)
Q Consensus 134 ~~y~~l~-~~~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~l~ 210 (497)
.-|+-++ ++.-|+ .|+.++.+.++.+.+|...+--..+.+.-. -++...+-+ . +.....+++ ..++..
T Consensus 179 ~l~PllG~~r~~G~-~G~~IDilav~at~~G~atsLGlg~~qi~~-Gl~~lfGi~-----~--~~~~qi~ii~vit~~~~ 249 (509)
T 2wsw_A 179 TLVPLVGEKHVNGL-FGTVVDNFYLVALILAMGTSLGLATPLVTE-CIQYLFGIP-----H--TLQLDAIIISCWILLNA 249 (509)
T ss_dssp GCHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCC-----C--CHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCcccCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCC-----C--ccHHHHHHHHHHHHHHH
Confidence 3588888 788887 599999998888888877775444433322 223333321 1 111122222 222233
Q ss_pred HhhcCCCC-cchhHHHHHHHHHHHHHHH
Q 010928 211 IAQILPNL-NSVAKVSMVGAITAVAYCT 237 (497)
Q Consensus 211 l~~~l~~l-~~l~~~s~~~~~~~~~~~~ 237 (497)
.+. ..-+ |-.++.|-+.+.+.+..++
T Consensus 250 ~Sa-~sGl~kGIk~LS~~N~~la~~Ll~ 276 (509)
T 2wsw_A 250 ICV-AFGLQKGVKIASDVRTYLSFLMLG 276 (509)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5566 5566666665555544433
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=42.15 E-value=1.1e+02 Score=31.01 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHhhhhhhhchH----HHHHHhc---C-----hHHHHHHHHHHHHHHHHHHHHHHH-----chhh--cCC
Q 010928 70 GNIFYAVFHLISSGIGSQALLL----PVAFAAL---G-----WTWGVICLSISFAWQLYTIWLLVI-----LAES--VPG 130 (497)
Q Consensus 70 ~s~~~a~~~l~~~~iG~GiL~l----P~af~~~---G-----~~~gii~li~~~~ls~~s~~lL~~-----~~~~--~~~ 130 (497)
=|.++-...+..+-+|.|++-- |..-.+. | .-.+...-.+=+-+.-++.+.++- ...+ .|.
T Consensus 96 fS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~~pl 175 (539)
T 4ain_A 96 FRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRKQ 175 (539)
T ss_dssp SCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTCCCS
T ss_pred CcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4666777888888899988732 2221110 1 112222222222222333333322 1121 111
Q ss_pred -CccccHHHHHHH-hcCcccchhhhhhhHHHhhhhHHHHHHHHhhhh
Q 010928 131 -TRYSRYLHLAVV-AFGPKLGKLLAIFPVMYLSGGTCVMLIITAGGN 175 (497)
Q Consensus 131 -~~~~~y~~l~~~-~~G~~~g~~~~~~~~~~~~~g~~v~Y~i~~~~~ 175 (497)
-|..-|+=++++ .-|+ .|+.++.+.++.+.+|...+--..+.+.
T Consensus 176 ~iss~l~PllG~r~~~G~-~G~~IDilav~atv~GvatSLGlg~~Qi 221 (539)
T 4ain_A 176 LLSSAFVPLIGEKGAEGW-LGKLIDILAIIATVFGTACSLGLGALQI 221 (539)
T ss_dssp CTTGGGHHHHHHHHTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhHhhcCCCccCCc-chhhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 122347888887 7787 5999999988888788777755544444
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=29.30 E-value=3.1e+02 Score=24.58 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhcchhchHHHHHHHHhhccCCCCCcchhhHHHHHHHHHHHHHHhh--c-------------
Q 010928 356 KHVMGTIYLLVLINSLSSFQIYAMPVFDNLEFQYVSKKKQRCPGWVRAGIRLFFGGLTFFIAVA--F------------- 420 (497)
Q Consensus 356 ~~~~~i~~~~~~~~~~~sypl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~--i------------- 420 (497)
+.+..-.++....+++.+.|...+-.-..+..-+.++ +++-...-......+.......+.+ .
T Consensus 59 e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~--Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~ 136 (249)
T 4b4a_A 59 EPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSH--EKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFT 136 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCC--CTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3455667888999999999997765554444333221 1111112233334444444444442 1
Q ss_pred -----c--chhHHHHhhhhhhh--hhHhhhhhHHHHHHhC
Q 010928 421 -----P--FLGSLAPLIGGIAL--PLTYVYPCFMYILIKK 451 (497)
Q Consensus 421 -----p--~~~~il~l~Ga~~~--~l~filP~l~~l~~~~ 451 (497)
| ++++-++++-.+.. .++|-+|.++.+-.+-
T Consensus 137 ~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~ 176 (249)
T 4b4a_A 137 QLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKA 176 (249)
T ss_dssp TSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred hhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4 55666666655543 6888999998877754
Done!