Query 010929
Match_columns 497
No_of_seqs 254 out of 820
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 96.9 0.74 2.5E-05 51.2 29.8 77 86-169 91-172 (724)
2 2qvt_A AVRL567-D; AVRL567-A, c 20.4 66 0.0023 27.2 3.0 13 465-477 136-149 (150)
3 4h62_V Mediator of RNA polymer 9.7 63 0.0022 20.2 -0.0 9 405-413 3-11 (31)
4 4b4a_A TATC, SEC-independent p 5.9 1.2E+03 0.04 21.8 7.0 51 260-325 58-108 (249)
5 3no8_A BTB/POZ domain-containi 5.1 1E+02 0.0035 28.0 -1.1 18 408-425 17-34 (176)
6 1lqb_D HIF-1 alpha, hypoxia-in 4.5 2.7E+02 0.0094 18.1 1.0 14 28-41 13-26 (34)
7 3gbw_A E3 ubiquitin-protein li 4.1 2.1E+02 0.0072 25.6 0.3 17 407-423 7-23 (164)
8 2hxp_A Dual specificity protei 3.2 5.9E+02 0.02 21.3 2.3 15 393-412 86-100 (155)
9 2nt2_A Protein phosphatase sli 3.2 6E+02 0.02 20.8 2.3 15 393-412 82-96 (145)
10 2opc_A AVRL567-A; cobalt, crys 3.0 4.7E+02 0.016 21.5 1.3 24 454-477 101-126 (127)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=96.92 E-value=0.74 Score=51.23 Aligned_cols=77 Identities=10% Similarity=0.005 Sum_probs=46.0
Q ss_pred HHHhhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhhhhhhhhccCccc-----hhHHHHHH
Q 010929 86 VMSFLHLPKTHGLIAVRLALGCITLSTLRFFRAQQVRYKFGSQVEAFFVILTAFQFHLLFYCTRPLP-----NILALGIV 160 (497)
Q Consensus 86 l~~~lg~~~~~~~~~~Rl~l~l~s~~~~~~~~~~~i~~~~g~~~a~~~lll~~~s~~~~~~ssRtLp-----Nsfa~~l~ 160 (497)
+.+.+|.+. ..+.+.+-+++++++....+- ..++..|+.+|....++.+.++.. .+||.. ++++..+.
T Consensus 91 l~~i~g~sl---~~v~~~lp~ifg~L~vi~~yl-l~~el~~~~aGl~AAll~ai~P~~---i~RS~aG~~D~e~l~i~~~ 163 (724)
T 3rce_A 91 LYSILPFSF---ESIILYMSTFFASLIVVPIIL-IAREYKLTTYGFIAALLGSIANSY---YNRTMSGYYDTDMLVLVLP 163 (724)
T ss_dssp HHHSCSSCH---HHHHHHHHHHHGGGGHHHHHH-HHHHTTCHHHHHHHHHHHTTSHHH---HHTSSTTCCSGGGGTTHHH
T ss_pred HHHHcCCCH---HHHHHHHHHHHHHHHHHHHHH-HHHHHcCchHHHHHHHHHHHHHHH---HHHhccccccchhHHHHHH
Confidence 334566553 345666666666655555554 344445666777778888888773 335433 46676666
Q ss_pred HHHHHHHhc
Q 010929 161 NLAYGFWLK 169 (497)
Q Consensus 161 ~~al~~~l~ 169 (497)
+++++.|.+
T Consensus 164 ll~~~~~i~ 172 (724)
T 3rce_A 164 MLILLTFIR 172 (724)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666653
No 2
>2qvt_A AVRL567-D; AVRL567-A, crystallization, molecular replacement, plant disease resistance, , unknown function; 2.26A {Melampsora lini}
Probab=20.41 E-value=66 Score=27.25 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=9.4
Q ss_pred CCCCC-ceeeecCe
Q 010929 465 LRFPP-FLLIKEPK 477 (497)
Q Consensus 465 ~~~~~-~~~~~~~~ 477 (497)
+++|| |+|+.-||
T Consensus 136 ~n~p~yikiklvpk 149 (150)
T 2qvt_A 136 PNFPDYIKIKLVPK 149 (150)
T ss_dssp TTSCCEEEEEEEEC
T ss_pred CCCCcceEEEeccC
Confidence 45777 88888775
No 3
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=9.65 E-value=63 Score=20.18 Aligned_cols=9 Identities=44% Similarity=0.766 Sum_probs=1.5
Q ss_pred CCccccccc
Q 010929 405 MNGISRFCE 413 (497)
Q Consensus 405 ~tGvsrF~~ 413 (497)
-+|||||.|
T Consensus 3 gsgvtrfde 11 (31)
T 4h62_V 3 GSGVTRFDE 11 (31)
T ss_dssp -------CH
T ss_pred CCccccccH
Confidence 469999986
No 4
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=5.87 E-value=1.2e+03 Score=21.82 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=32.0
Q ss_pred ccchHHHHHhhHhHHhhhhHHHHHHHhhhhcccchhHHHHHHHHHHHccCCccchhhhhhhhhHHH
Q 010929 260 THSFHWYFTSALPRSLLAAYPLCFLGALLDRRVLPFVIPVFTFVLLYSKLPHKELRFIISSVPIFN 325 (497)
Q Consensus 260 t~P~~~Yf~~~lP~~l~~~lpl~~~g~~~~~r~~~ll~~~l~~v~v~SllpHKE~RFI~p~~Pll~ 325 (497)
+||+..|++..+-..+..+.|..+.-. |-.+---+-.||-|...|.++.-.
T Consensus 58 ~e~f~~~lkvs~~~g~~~a~P~ilyQi---------------w~Fi~PgLy~~Err~~~~~~~~s~ 108 (249)
T 4b4a_A 58 TEPLFILIKISLAVGFIIASPVILYQF---------------WRFIEPALYSHEKRAFIPLLLGSI 108 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHTTTTSCCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhccccHhHHHHHHHHHHHHH
Confidence 678899988877665566677665543 222333344567777777765543
No 5
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2, PAM-highwire-RPM-1 domain, toposis regulation, protein structure initiative; 2.20A {Homo sapiens}
Probab=5.07 E-value=1e+02 Score=28.02 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.1
Q ss_pred cccccccCCCceeccCCC
Q 010929 408 ISRFCENDFPWRYSKEES 425 (497)
Q Consensus 408 vsrF~~~~~~w~y~K~e~ 425 (497)
|+||++.+..|.|+++.|
T Consensus 17 v~RFqs~~~~WgYsg~~D 34 (176)
T 3no8_A 17 INRFQQVESRWGYSGTSD 34 (176)
T ss_dssp EECCSEEEEEECCSSCCE
T ss_pred cccccccCCCCccCCCcc
Confidence 589999777999998754
No 6
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=4.48 E-value=2.7e+02 Score=18.14 Aligned_cols=14 Identities=21% Similarity=0.764 Sum_probs=11.8
Q ss_pred hcCCCCCCCCcccc
Q 010929 28 LAMPYTKVEESFNV 41 (497)
Q Consensus 28 ~~~pyt~~DE~Fn~ 41 (497)
.++||..-||-||.
T Consensus 13 mLAPYIpMddDFqL 26 (34)
T 1lqb_D 13 MLAPYIPMDDDFQL 26 (34)
T ss_pred HhcCccccCccccc
Confidence 46899999999995
No 7
>3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein associated with MYC, PAM, RPM-1, PHR domain, structural genomics, PSI-2; HET: MSE; 1.32A {Mus musculus}
Probab=4.10 E-value=2.1e+02 Score=25.59 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.9
Q ss_pred ccccccccCCCceeccC
Q 010929 407 GISRFCENDFPWRYSKE 423 (497)
Q Consensus 407 GvsrF~~~~~~w~y~K~ 423 (497)
=|+||++.+..|.|+.+
T Consensus 7 ~v~RF~s~~~~W~Y~g~ 23 (164)
T 3gbw_A 7 VVNRFESHGGGWGYSAH 23 (164)
T ss_dssp EEECEEEECSCBCCCTT
T ss_pred EEecccccCCCcccCCC
Confidence 37899998888999998
No 8
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=3.17 E-value=5.9e+02 Score=21.32 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.2
Q ss_pred CceeEEeeeCCCCCcccccc
Q 010929 393 EEQWVHIDPYSAMNGISRFC 412 (497)
Q Consensus 393 ~~~~vHid~~a~~tGvsrF~ 412 (497)
.+|-|| |..|++|=+
T Consensus 86 ~~VlVH-----C~~G~~RS~ 100 (155)
T 2hxp_A 86 CGVLVH-----SLAGVSRSV 100 (155)
T ss_dssp CEEEEE-----CSSSSSHHH
T ss_pred CcEEEE-----CCCCCchhH
Confidence 668899 888999854
No 9
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=3.16 E-value=6e+02 Score=20.82 Aligned_cols=15 Identities=33% Similarity=0.435 Sum_probs=11.9
Q ss_pred CceeEEeeeCCCCCcccccc
Q 010929 393 EEQWVHIDPYSAMNGISRFC 412 (497)
Q Consensus 393 ~~~~vHid~~a~~tGvsrF~ 412 (497)
.+|-|| |..|++|=+
T Consensus 82 ~~VlVH-----C~~G~~RS~ 96 (145)
T 2nt2_A 82 SKCLVH-----SKMGVSRSA 96 (145)
T ss_dssp CEEEEE-----CSSSSSHHH
T ss_pred CeEEEE-----CCCCCchHH
Confidence 568899 888998854
No 10
>2opc_A AVRL567-A; cobalt, crystallization, single-wavelength anomalous dispersion (SAD), plant disease resistance, protein binding; 1.43A {Melampsora lini}
Probab=3.01 E-value=4.7e+02 Score=21.50 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=0.0
Q ss_pred eeeCccccc-cCCCCCC-ceeeecCe
Q 010929 454 SMDGFSRVR-PQLRFPP-FLLIKEPK 477 (497)
Q Consensus 454 ~~~~f~~i~-~~~~~~~-~~~~~~~~ 477 (497)
+|++|.=.. =-+++|| |+|+.-||
T Consensus 101 tIe~~HLFa~di~n~P~yIKIkLVPK 126 (127)
T 2opc_A 101 TIEGFHLFENDIPNFPDYIKIKLVPK 126 (127)
T ss_dssp SCCGGGCBCCSSTTSCCEEEEEEEEC
T ss_pred eeeeeeecccCCCCCCcceEEEeccC
Done!