Query 010929
Match_columns 497
No_of_seqs 254 out of 820
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 17:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010929.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010929hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.0 1.3E+02 0.0093 26.5 6.1 16 365-380 74-89 (248)
2 d1t1ja_ c.23.14.2 (A:) Hypothe 5.2 75 0.0054 24.6 0.3 23 27-49 6-35 (119)
3 d1bpoa1 a.118.1.4 (A:331-487) 4.2 2.3E+02 0.017 23.1 2.7 22 366-387 20-43 (157)
4 d2fpwa1 c.108.1.19 (A:3-163) H 4.1 2.2E+02 0.016 22.4 2.7 14 373-386 32-46 (161)
5 d1uaza_ f.13.1.1 (A:) Archaerh 3.9 4.2E+02 0.03 22.4 4.6 32 304-335 35-66 (236)
6 d1wnaa1 d.319.1.1 (A:1-127) Hy 3.9 1.4E+02 0.01 23.2 1.0 18 371-388 65-83 (127)
7 d2o2xa1 c.108.1.19 (A:8-216) H 3.1 1.3E+02 0.0098 25.1 0.2 14 373-386 50-64 (209)
8 d1j5ja_ g.3.7.2 (A:) Bekm-1 {L 2.9 3.2E+02 0.024 16.2 1.7 18 33-50 5-22 (36)
9 d1np7a1 a.99.1.1 (A:205-483) C 2.8 1.5E+02 0.011 25.9 0.2 18 369-386 4-23 (279)
10 d1lnla2 b.112.1.1 (A:305-405) 2.7 4.1E+02 0.03 19.8 2.7 73 393-477 17-101 (101)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=14.02 E-value=1.3e+02 Score=26.46 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=12.1
Q ss_pred HHHHhhcCCCchHHHH
Q 010929 365 TFMASYENYPSGYALK 380 (497)
Q Consensus 365 ~~~~s~~NYpgg~al~ 380 (497)
..+++..||-.|+-++
T Consensus 74 T~~iaFTNy~tgh~lt 89 (248)
T d2r6gf1 74 TIAIAFTNYSSTNQLT 89 (248)
T ss_dssp HHHGGGBCCSSTTCBC
T ss_pred EEEEEEEEcCCCcccc
Confidence 4578999999995443
No 2
>d1t1ja_ c.23.14.2 (A:) Hypothetical protein PA1492 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.21 E-value=75 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=15.2
Q ss_pred HhcCCCCCCCCc-----ccc--HHHHHHHh
Q 010929 27 VLAMPYTKVEES-----FNV--QAMHDILY 49 (497)
Q Consensus 27 ~~~~pyt~~DE~-----Fn~--~~~h~~L~ 49 (497)
.+.|||+|+|+. |+- |-+.+++-
T Consensus 6 flacpys~~d~~vv~~rf~~c~~~AA~li~ 35 (119)
T d1t1ja_ 6 FLACPYSHADAEVVEQRFRACNEVAATIVR 35 (119)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 367999999875 443 44555663
No 3
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.22 E-value=2.3e+02 Score=23.08 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=17.2
Q ss_pred HHHhhcCCCchH--HHHHHHHhcc
Q 010929 366 FMASYENYPSGY--ALKYLHQIGH 387 (497)
Q Consensus 366 ~~~s~~NYpgg~--al~~lh~~~~ 387 (497)
-.++..|+||+| ..+++|++..
T Consensus 20 ~lA~r~~LpGAd~l~~~~F~~lf~ 43 (157)
T d1bpoa1 20 RMAVRNNLAGAEELFARKFNALFA 43 (157)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHH
Confidence 356899999996 6678888754
No 4
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}
Probab=4.09 E-value=2.2e+02 Score=22.44 Aligned_cols=14 Identities=29% Similarity=0.263 Sum_probs=12.2
Q ss_pred CCch-HHHHHHHHhc
Q 010929 373 YPSG-YALKYLHQIG 386 (497)
Q Consensus 373 Ypgg-~al~~lh~~~ 386 (497)
|||. ++++.|++.+
T Consensus 32 ~pgv~e~L~~L~~~g 46 (161)
T d2fpwa1 32 EPGVIPQLLKLQKAG 46 (161)
T ss_dssp CTTHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHcC
Confidence 8998 9999999865
No 5
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=3.95 E-value=4.2e+02 Score=22.39 Aligned_cols=32 Identities=19% Similarity=-0.037 Sum_probs=22.6
Q ss_pred HHHccCCccchhhhhhhhhHHHHHHHHHHHHH
Q 010929 304 LLYSKLPHKELRFIISSVPIFNLSAAVAASRI 335 (497)
Q Consensus 304 ~v~SllpHKE~RFI~p~~Pll~l~aA~~~~~l 335 (497)
.-..-.+.||+|..+.+-.+++..||..=-++
T Consensus 35 ~~~~~~~~~~~r~~~~~~~lIt~IAa~~Y~~M 66 (236)
T d1uaza_ 35 VKGWGVTDKEAREYYSITILVPGIASAAYLSM 66 (236)
T ss_dssp HHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcceeeeeHHHHHHHHHHHHHHHH
Confidence 33444578888888888788887777666555
No 6
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=3.86 E-value=1.4e+02 Score=23.21 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=14.5
Q ss_pred cCCCch-HHHHHHHHhccC
Q 010929 371 ENYPSG-YALKYLHQIGHL 388 (497)
Q Consensus 371 ~NYpgg-~al~~lh~~~~~ 388 (497)
-.||+| +|++.|-+...+
T Consensus 65 Pafp~G~~ALaELv~wl~~ 83 (127)
T d1wnaa1 65 PAFPGGEEALSELVGLLLA 83 (127)
T ss_dssp TTSTTHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 468999 999999887654
No 7
>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}
Probab=3.10 E-value=1.3e+02 Score=25.07 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=12.6
Q ss_pred CCch-HHHHHHHHhc
Q 010929 373 YPSG-YALKYLHQIG 386 (497)
Q Consensus 373 Ypgg-~al~~lh~~~ 386 (497)
|||. +++++|++.+
T Consensus 50 ~pgv~e~L~~L~~~G 64 (209)
T d2o2xa1 50 RPQMLPAIATANRAG 64 (209)
T ss_dssp CGGGHHHHHHHHHHT
T ss_pred cccHHHHHHHHHhhC
Confidence 8998 9999999976
No 8
>d1j5ja_ g.3.7.2 (A:) Bekm-1 {Lesser asian scorpion (Buthus eupeus) [TaxId: 34648]}
Probab=2.88 E-value=3.2e+02 Score=16.20 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=14.6
Q ss_pred CCCCCccccHHHHHHHhc
Q 010929 33 TKVEESFNVQAMHDILYH 50 (497)
Q Consensus 33 t~~DE~Fn~~~~h~~L~~ 50 (497)
.||.||+|-+++-.-.+|
T Consensus 5 ikcs~s~qc~pvck~~fg 22 (36)
T d1j5ja_ 5 IKCSESYQCFPVCKSRFG 22 (36)
T ss_dssp EECSSGGGHHHHHHHHTC
T ss_pred ceecCccchhHHHHHHcC
Confidence 478999999988777765
No 9
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=2.81 E-value=1.5e+02 Score=25.92 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.0
Q ss_pred hhcCCCch--HHHHHHHHhc
Q 010929 369 SYENYPSG--YALKYLHQIG 386 (497)
Q Consensus 369 s~~NYpgg--~al~~lh~~~ 386 (497)
|..++||| +|+++|.+..
T Consensus 4 s~~~f~gGe~~Al~~L~~Fl 23 (279)
T d1np7a1 4 SVLAFQGGETAGLARLQDYF 23 (279)
T ss_dssp SSCCCCCSHHHHHHHHHHHH
T ss_pred ccCCCCChHHHHHHHHHHHH
Confidence 46789999 8999999864
No 10
>d1lnla2 b.112.1.1 (A:305-405) C-terminal domain of mollusc hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]}
Probab=2.74 E-value=4.1e+02 Score=19.78 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=41.1
Q ss_pred CceeEEeeeCCCC-Cccccc----cccCCCceeccCCCCChhhhccCCCcEEEecC------CCCCCeeEEEeeeCcccc
Q 010929 393 EEQWVHIDPYSAM-NGISRF----CENDFPWRYSKEESIPLKEYQNRNFTYLINEH------LLVEGYKCLFSMDGFSRV 461 (497)
Q Consensus 393 ~~~~vHid~~a~~-tGvsrF----~~~~~~w~y~K~e~~~~~~~~~~~f~~li~~~------~~~~~~~~~~~~~~f~~i 461 (497)
.+|.+.+|....- .=+-.| ||.+=+|.||.-=. |=||+. +..+.|.+--.|.+.+|=
T Consensus 17 A~V~~~iC~~~~~c~~AG~F~vLGG~~EMpW~FdRlyk------------ydIT~~l~~l~l~~~d~f~i~~~i~~vnGt 84 (101)
T d1lnla2 17 AHLDFSICAIDGECTHAGYFDVLGGSLETPWQFDRLYK------------YEITDVLESKGLDVHDVFDIKITQTSWDNE 84 (101)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCCTTSCCCCCSSCEE------------EECHHHHHTTTCCTTSCCEEEEEEEESSSC
T ss_pred eEEEEEEECCCCCccEeeEEEEecCCccCccccCccch------------hhHHHHHHHcCCCCCCCEEEEEEEEecCCC
Confidence 4677788765421 122334 34555687775421 222221 123567777788888887
Q ss_pred ccCCC-CCCceeeecCe
Q 010929 462 RPQLR-FPPFLLIKEPK 477 (497)
Q Consensus 462 ~~~~~-~~~~~~~~~~~ 477 (497)
.+... +|.-.|+-+|+
T Consensus 85 ~l~~~~lp~Ptii~~P~ 101 (101)
T d1lnla2 85 DISTDRFPPPSVIYVPK 101 (101)
T ss_dssp BCCGGGSCCCBCCEECC
T ss_pred CCccccCCCCeEEeCcC
Confidence 78766 77555555553
Done!