BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010931
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 195/322 (60%), Gaps = 10/322 (3%)
Query: 23 IGANIGTELSDMPHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPNEQLL 82
IG G +++P P++VV+L K+ I +RLYD ++ L AL N+ I+V + VP +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 83 GIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVAS 142
+ + S A +W+ RN+VA++P+ + I VG+E++ + A ++ A++ I++AL ++
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPG-SDLAQYILPAMRNIYNALSSA 119
Query: 143 NLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDY 202
L +QIKVST + + ++ S+PPS F+ + L P++ FL S G+ L++N+YPY+ Y
Sbjct: 120 GLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSY 179
Query: 203 MQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVMVT 262
+ G I L YALF V + Y N+FDA+VDA + A+ + N+ V+V+
Sbjct: 180 TGNPGQISLPYALFTA----SGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVS 235
Query: 263 ESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNKPG 322
ESGWPS G E A+ NA TYN NLIRHV GTP+ PG + YI+E++NE+ K G
Sbjct: 236 ESGWPSAGGGAE--ASTSNAQTYNQNLIRHV--GGGTPRRPGKEIEAYIFEMFNENQKAG 291
Query: 323 PLSEKNWGLFDANGDPVYILHL 344
+ E+N+GLF N PVY +
Sbjct: 292 GI-EQNFGLFYPNKQPVYQISF 312
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 14/324 (4%)
Query: 23 IGANIGTELSDMPHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPNEQLL 82
IG G +++P V+ L A I+ +R+Y + AL + I++ + VPN+ L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 83 GIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLPNA--APVLVNALKFIHSALV 140
+ S A WV NI H+P I VG+EV + A + A++ I++AL
Sbjct: 63 ALANP-SNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 141 ASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYY 200
++ L +QIKVST S L+ +++PP + F + + P++ FL L+ NIYPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 201 DYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVM 260
++ + +PL YALF N Y N+FDA+VD+ YFA L NI ++
Sbjct: 182 GHIDNTNAVPLSYALFNQQRRNDTG--------YQNLFDALVDSMYFATEKLGGQNIEII 233
Query: 261 VTESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNK 320
V+ESGWPS+G P ATL+NA TY +NLI HV GTPK PG + TY++ +++E+ K
Sbjct: 234 VSESGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 321 PGPLSEKNWGLFDANGDPVYILHL 344
G SEK++GLF+ + P Y L+
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 177/324 (54%), Gaps = 14/324 (4%)
Query: 23 IGANIGTELSDMPHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPNEQLL 82
IG G +++P V+ L A I+ +R+Y + AL + I++ + VPN+ L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 83 GIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLPNA--APVLVNALKFIHSALV 140
+ S A WV NI H+P I VG+EV + A + A++ I++AL
Sbjct: 63 ALANP-SNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 141 ASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYY 200
++ L +QIKVST S L+ +++PP + F + + P++ FL L+ NIYPY+
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 201 DYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVM 260
++ + +PL YALF N Y N+FDA+VD+ YFA L NI ++
Sbjct: 182 GHIDNTNAVPLSYALFNQQRRNDTG--------YQNLFDALVDSMYFATEKLGGQNIEII 233
Query: 261 VTESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNK 320
V+ SGWPS+G P ATL+NA TY +NLI HV GTPK PG + TY++ +++E+ K
Sbjct: 234 VSASGWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 321 PGPLSEKNWGLFDANGDPVYILHL 344
G SEK++GLF+ + P Y L+
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNF 314
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 180/322 (55%), Gaps = 16/322 (4%)
Query: 23 IGANIGTELSDMPHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPNEQLL 82
IG G +++P + VV L +++ I +R+Y AD L AL N+GI + + + N+QL
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 83 GIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVAS 142
I S S AA+WV N+ +YPA NI I G+EV A ++ A++ +++AL A+
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQG---GATQSILPAMRNLNAALSAA 117
Query: 143 NLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDY 202
IKVST + + +SFPPS F ++ + + L STG+ L+ N+YPY+ Y
Sbjct: 118 -GLGAIKVSTSIRFDEVANSFPPSAGVFKNAY---MTDVARLLASTGAPLLANVYPYFAY 173
Query: 203 MQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVMVT 262
+ G I L+YA F+ P D N + Y+++FDAMVDA Y A+ + V+V+
Sbjct: 174 RDNPGSISLNYATFQ---PGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVS 230
Query: 263 ESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNKPG 322
ESGWPS G A+ NA TYN LI HV GTPK + TYI+ ++NE+ K G
Sbjct: 231 ESGWPSAGGF---AASAGNARTYNQGLINHV--GGGTPKKRE-ALETYIFAMFNENQKTG 284
Query: 323 PLSEKNWGLFDANGDPVYILHL 344
+E+++GLF+ + P Y +
Sbjct: 285 DATERSFGLFNPDKSPAYNIQF 306
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 177/322 (54%), Gaps = 16/322 (4%)
Query: 23 IGANIGTELSDMPHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPNEQLL 82
IG G +++P + VV++ K+ I+ +RLY ++ L A+ TGI V V PN+ L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 83 GIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVAS 142
+ S + AA+WV NI A YP + +CVG+EV A LV A+K +H ALVA+
Sbjct: 61 NLAASPAAAASWVKSNIQA-YPKVSFRYVCVGNEVAG---GATRNLVPAMKNVHGALVAA 116
Query: 143 NLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDY 202
L H IKV+T +S +++ PPS F + P++ FL T + LM NIYPY +
Sbjct: 117 GLGH-IKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAW 175
Query: 203 MQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVMVT 262
+ + + YALF V + Y N+FD VDA Y AM +++ ++V+
Sbjct: 176 AYNPSAMDMGYALFNA----SGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVS 231
Query: 263 ESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNKPG 322
ESGWPS G + AT NA YN +LI HV GTP+HPG + TYI+ ++NE+ K
Sbjct: 232 ESGWPSGGGT---AATPANARFYNQHLINHV--GRGTPRHPG-AIETYIFAMFNENQKDS 285
Query: 323 PLSEKNWGLFDANGDPVYILHL 344
+ E+NWGLF N VY ++
Sbjct: 286 GV-EQNWGLFYPNMQHVYPINF 306
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 179/326 (54%), Gaps = 14/326 (4%)
Query: 23 IGANIGTELSDMPHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPNEQLL 82
+G G + +++P ++V+AL K I +R+YD ++ +L AL + I++ + VPN L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 83 GIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLPNAA---PVLVNALKFIHSAL 139
+ S A +WV +N+ + + I VG+E+ A ++ A++ IH A+
Sbjct: 62 SLTNP-SNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 140 VASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPY 199
++ L QIKVST + +L+ +S+PPS F L P++ FL S S L+ NIYPY
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 200 YDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPV 259
+ Y + I L YALF P+ D Y N+FDA +DA Y A+ + ++ V
Sbjct: 181 FTYAGNPRDISLPYALFT--SPSVVVWDGQR--GYKNLFDATLDALYSALERASGGSLEV 236
Query: 260 MVTESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDN 319
+V+ESGWPS G AT +N TY SNLI+HV + GTPK P + TY++ +++E N
Sbjct: 237 VVSESGWPSAGAF---AATFDNGRTYLSNLIQHV--KRGTPKRPKRAIETYLFAMFDE-N 290
Query: 320 KPGPLSEKNWGLFDANGDPVYILHLT 345
K P EK++GLF N Y L+ +
Sbjct: 291 KKQPEVEKHFGLFFPNKWQKYNLNFS 316
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 359 TYCTARDGADPKMLQAALDWACGPGKVDCSGLLQGQPCYQPDNVIAHATYAFDTYYHQMR 418
++C + G L +++AC G +DC + G C++P+ V AHA Y + YY
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70
Query: 419 KDPAACNFNGVAAITTSDPSHGSCIFP 445
++ C+F+ A +T ++PS+G+C FP
Sbjct: 71 RNSWNCDFSQTATLTNTNPSYGACNFP 97
>pdb|1UC2|A Chain A, Hypothetical Extein Protein Of Ph1602 From Pyrococcus
Horikoshii
pdb|1UC2|B Chain B, Hypothetical Extein Protein Of Ph1602 From Pyrococcus
Horikoshii
pdb|4DWQ|A Chain A, Rtcb-GmpMN2+ COMPLEX
pdb|4DWQ|B Chain B, Rtcb-GmpMN2+ COMPLEX
Length = 481
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 215 LFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVMVTESGWPSKGDSNE 274
LFK +P + +H++ + D +VD A +A+ GW + E
Sbjct: 123 LFKNVPSGVGS-QGRIKLHWTQIDDVLVDGAKWAVD-----------NGYGWERDLERLE 170
Query: 275 PDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNKPGPLSEKNWGLFDA 334
+E A+ + Q G P+ +G + E+ D P K +GLF+
Sbjct: 171 EGGRMEGAD---PEAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE- 226
Query: 335 NGDPVYILHL--TGSGSVLAND 354
G V ++H G G +A+D
Sbjct: 227 -GQVVVMVHTGSRGLGHQVASD 247
>pdb|4DWR|B Chain B, Rna Ligase RtcbMN2+ COMPLEX
pdb|4DWR|A Chain A, Rna Ligase RtcbMN2+ COMPLEX
pdb|4DWR|C Chain C, Rna Ligase RtcbMN2+ COMPLEX
Length = 487
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 215 LFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVMVTESGWPSKGDSNE 274
LFK +P + +H++ + D +VD A +A+ GW + E
Sbjct: 123 LFKNVPSGVGS-QGRIKLHWTQIDDVLVDGAKWAVD-----------NGYGWERDLERLE 170
Query: 275 PDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNKPGPLSEKNWGLFDA 334
+E A+ + Q G P+ +G + E+ D P K +GLF+
Sbjct: 171 EGGRMEGAD---PEAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE- 226
Query: 335 NGDPVYILHL--TGSGSVLAND 354
G V ++H G G +A+D
Sbjct: 227 -GQVVVMVHTGSRGLGHQVASD 247
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 302 HPGIGVSTYIYELYNED----NKPGPLSEKNWGLFDANGDPVYILHLTGSGSVLAN 353
+P +G ST L E+ N PG EK G F+ NG+ ++ L G S+ AN
Sbjct: 11 NPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 66
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 302 HPGIGVSTYIYELYNED----NKPGPLSEKNWGLFDANGDPVYILHLTGSGSVLANDTTN 357
+P +G ST L E+ N PG EK G F+ NG+ ++ L G S+ AN
Sbjct: 11 NPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDE 70
Query: 358 QTYCTARD 365
ARD
Sbjct: 71 ---IIARD 75
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 302 HPGIGVSTYIYELYNED----NKPGPLSEKNWGLFDANGDPVYILHLTGSGSVLANDTTN 357
+P +G ST L E+ N PG EK G F+ NG+ ++ L G S+ AN
Sbjct: 15 NPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDE 74
Query: 358 QTYCTARD 365
ARD
Sbjct: 75 ---IIARD 79
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 302 HPGIGVSTYIYELYNED----NKPGPLSEKNWGLFDANGDPVYILHLTGSGSVLANDTTN 357
+P +G ST L E+ N PG EK G F+ NG+ ++ L G S+ AN
Sbjct: 12 NPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDE 71
Query: 358 QTYCTARD 365
ARD
Sbjct: 72 ---IIARD 76
>pdb|1VEE|A Chain A, Nmr Structure Of The Hypothetical Rhodanese Domain
At4g01050 From Arabidopsis Thaliana
pdb|2DCQ|A Chain A, Fully Automated Nmr Structure Determination Of The
Rhodanese Homology Domain At4g01050(175-295) From
Arabidopsis Thaliana
Length = 134
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 296 QTGTPKHPGIGVSTYIYELYNEDNKPGPLSEKNWGLFDANGDPVYIL-HLTGSGSVLAND 354
Q G+P G+G + +YN ++KPG L + + D +YIL G+ ++A
Sbjct: 35 QVGSPNIKGLGKKA-VSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAEL 93
Query: 355 TTNQTYCTA---RDGAD-PK-MLQAALDW 378
+ +A +DGA+ P+ L ++L W
Sbjct: 94 VALNGFKSAYAIKDGAEGPRGWLNSSLPW 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,128,566
Number of Sequences: 62578
Number of extensions: 654148
Number of successful extensions: 1374
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 19
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)