Query 010931
Match_columns 497
No_of_seqs 246 out of 1518
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 2.6E-83 5.5E-88 652.9 19.4 310 23-344 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 5E-42 1.1E-46 333.2 21.8 252 19-336 42-305 (305)
3 smart00768 X8 Possibly involve 100.0 9.9E-30 2.1E-34 212.6 8.4 85 359-444 1-85 (85)
4 PF03198 Glyco_hydro_72: Gluca 99.9 1.4E-23 3E-28 211.2 12.4 237 22-338 29-295 (314)
5 PF07983 X8: X8 domain; Inter 99.9 1.7E-22 3.6E-27 166.2 6.3 73 359-431 1-78 (78)
6 PF07745 Glyco_hydro_53: Glyco 99.1 1.9E-08 4.1E-13 104.0 21.2 246 37-342 26-329 (332)
7 COG3867 Arabinogalactan endo-1 98.8 1.4E-07 3E-12 94.6 14.3 255 37-343 65-389 (403)
8 PRK10150 beta-D-glucuronidase; 98.5 1.2E-05 2.5E-10 89.9 22.1 241 39-342 317-585 (604)
9 PF00150 Cellulase: Cellulase 98.3 7.9E-05 1.7E-09 73.8 20.6 123 22-146 10-166 (281)
10 PF02836 Glyco_hydro_2_C: Glyc 97.5 0.0084 1.8E-07 61.0 18.4 122 22-154 17-158 (298)
11 smart00633 Glyco_10 Glycosyl h 97.4 0.021 4.5E-07 57.0 19.4 77 248-342 174-251 (254)
12 PF11790 Glyco_hydro_cc: Glyco 96.6 0.21 4.7E-06 49.5 18.6 190 70-338 39-232 (239)
13 TIGR03356 BGL beta-galactosida 96.5 0.23 4.9E-06 53.7 19.5 41 39-79 58-117 (427)
14 PF00232 Glyco_hydro_1: Glycos 96.1 0.025 5.3E-07 61.4 9.7 114 39-157 62-224 (455)
15 PRK10340 ebgA cryptic beta-D-g 96.0 0.21 4.5E-06 59.6 17.2 97 22-118 336-451 (1021)
16 PLN02998 beta-glucosidase 94.5 4.9 0.00011 44.4 20.8 44 39-82 86-148 (497)
17 PLN02814 beta-glucosidase 94.1 5.7 0.00012 44.0 20.2 44 39-82 81-143 (504)
18 PLN02849 beta-glucosidase 93.2 7.9 0.00017 42.9 19.3 44 39-82 83-145 (503)
19 PRK09593 arb 6-phospho-beta-gl 92.3 21 0.00045 39.3 23.0 45 38-82 76-140 (478)
20 PF02449 Glyco_hydro_42: Beta- 90.3 1.8 3.9E-05 45.6 10.1 83 38-120 13-141 (374)
21 PRK15014 6-phospho-beta-glucos 89.6 37 0.0008 37.4 22.2 43 38-80 72-134 (477)
22 PRK09852 cryptic 6-phospho-bet 86.6 56 0.0012 36.0 22.1 45 38-82 74-138 (474)
23 PRK09525 lacZ beta-D-galactosi 83.1 6.5 0.00014 47.2 10.3 97 22-118 352-464 (1027)
24 PF01229 Glyco_hydro_39: Glyco 82.8 26 0.00056 38.4 14.2 249 42-339 47-350 (486)
25 PRK09936 hypothetical protein; 72.4 24 0.00052 36.3 9.3 78 21-98 20-116 (296)
26 cd02875 GH18_chitobiase Chitob 72.3 23 0.00051 37.3 9.6 95 48-145 55-151 (358)
27 COG3934 Endo-beta-mannanase [C 72.3 14 0.00031 40.4 7.9 62 92-153 123-184 (587)
28 PF00925 GTP_cyclohydro2: GTP 65.3 8.1 0.00018 36.4 4.0 37 41-77 132-168 (169)
29 PLN03059 beta-galactosidase; P 64.8 1.5E+02 0.0032 35.1 14.7 116 39-156 63-224 (840)
30 TIGR01579 MiaB-like-C MiaB-lik 64.0 65 0.0014 34.4 11.1 62 123-203 270-331 (414)
31 PF03662 Glyco_hydro_79n: Glyc 62.1 26 0.00056 36.6 7.3 82 60-141 113-202 (319)
32 COG3250 LacZ Beta-galactosidas 61.9 41 0.0009 39.5 9.6 112 22-138 302-423 (808)
33 PF14488 DUF4434: Domain of un 61.4 1E+02 0.0022 28.9 10.7 100 39-142 24-151 (166)
34 COG4782 Uncharacterized protei 61.0 29 0.00063 36.8 7.5 60 234-296 125-187 (377)
35 TIGR00505 ribA GTP cyclohydrol 58.8 15 0.00033 35.3 4.7 34 41-74 131-164 (191)
36 COG2730 BglC Endoglucanase [Ca 58.4 76 0.0017 34.0 10.4 106 38-144 76-220 (407)
37 PRK00393 ribA GTP cyclohydrola 58.2 16 0.00034 35.4 4.7 37 41-77 134-170 (197)
38 PRK12485 bifunctional 3,4-dihy 52.3 17 0.00038 38.6 4.2 35 41-76 331-365 (369)
39 PF02055 Glyco_hydro_30: O-Gly 51.5 3.6E+02 0.0078 29.9 14.4 89 67-155 166-282 (496)
40 smart00481 POLIIIAc DNA polyme 50.4 51 0.0011 25.5 5.7 44 35-78 15-63 (67)
41 PRK13511 6-phospho-beta-galact 49.2 39 0.00084 37.1 6.5 45 38-82 57-120 (469)
42 cd00641 GTP_cyclohydro2 GTP cy 48.5 28 0.0006 33.5 4.6 37 41-77 133-169 (193)
43 PF13547 GTA_TIM: GTA TIM-barr 48.5 30 0.00064 35.6 5.0 85 105-203 17-114 (299)
44 PRK14019 bifunctional 3,4-dihy 48.5 22 0.00047 37.9 4.2 36 41-77 328-363 (367)
45 PF05990 DUF900: Alpha/beta hy 47.2 48 0.001 32.7 6.2 43 250-295 43-88 (233)
46 PRK09314 bifunctional 3,4-dihy 44.4 30 0.00064 36.5 4.4 33 41-73 301-334 (339)
47 PRK09318 bifunctional 3,4-dihy 42.8 34 0.00074 36.7 4.7 38 41-78 320-357 (387)
48 PRK14334 (dimethylallyl)adenos 42.6 2.6E+02 0.0055 30.3 11.5 59 123-200 269-327 (440)
49 PRK14328 (dimethylallyl)adenos 42.5 2.5E+02 0.0053 30.4 11.3 61 123-202 279-339 (439)
50 PLN02831 Bifunctional GTP cycl 42.1 34 0.00074 37.4 4.6 37 41-77 373-409 (450)
51 PRK08815 GTP cyclohydrolase; P 41.9 36 0.00077 36.4 4.6 38 41-78 305-342 (375)
52 PRK09311 bifunctional 3,4-dihy 41.0 37 0.0008 36.6 4.6 37 41-77 339-375 (402)
53 cd06545 GH18_3CO4_chitinase Th 40.7 91 0.002 30.8 7.2 81 60-144 50-133 (253)
54 PRK09319 bifunctional 3,4-dihy 40.4 38 0.00083 37.9 4.7 38 41-78 343-380 (555)
55 COG1433 Uncharacterized conser 40.1 61 0.0013 29.1 5.1 39 39-77 56-94 (121)
56 PLN00196 alpha-amylase; Provis 37.6 89 0.0019 33.9 6.9 56 23-78 29-114 (428)
57 PRK14331 (dimethylallyl)adenos 36.0 5.9E+02 0.013 27.5 13.7 195 27-264 169-388 (437)
58 PRK14330 (dimethylallyl)adenos 35.9 4.2E+02 0.0091 28.5 11.8 76 108-202 250-332 (434)
59 cd00598 GH18_chitinase-like Th 35.8 1.2E+02 0.0026 28.4 6.9 84 60-144 53-142 (210)
60 PF13377 Peripla_BP_3: Peripla 33.9 1.4E+02 0.0029 26.3 6.6 112 41-175 1-124 (160)
61 PRK14339 (dimethylallyl)adenos 32.4 4.6E+02 0.01 28.2 11.4 61 123-202 262-322 (420)
62 PRK14326 (dimethylallyl)adenos 32.3 2.7E+02 0.0058 30.9 9.7 58 123-199 289-346 (502)
63 PRK14327 (dimethylallyl)adenos 31.8 7.6E+02 0.016 27.5 14.3 60 123-201 344-403 (509)
64 COG0621 MiaB 2-methylthioadeni 30.8 7E+02 0.015 27.3 12.3 132 22-202 195-337 (437)
65 PRK07198 hypothetical protein; 30.8 45 0.00097 35.8 3.2 38 41-78 338-376 (418)
66 PF01055 Glyco_hydro_31: Glyco 30.5 2.2E+02 0.0048 30.5 8.6 132 124-314 41-178 (441)
67 PF14871 GHL6: Hypothetical gl 30.4 1.2E+02 0.0026 27.5 5.5 43 37-79 2-67 (132)
68 PF12876 Cellulase-like: Sugar 30.4 1.5E+02 0.0032 24.4 5.7 51 102-154 5-64 (88)
69 cd01543 PBP1_XylR Ligand-bindi 29.6 4.5E+02 0.0097 25.2 10.0 126 39-184 99-237 (265)
70 COG0807 RibA GTP cyclohydrolas 29.0 99 0.0021 30.0 5.0 40 41-80 133-172 (193)
71 PF13547 GTA_TIM: GTA TIM-barr 28.2 77 0.0017 32.6 4.2 41 255-295 205-265 (299)
72 PRK14336 (dimethylallyl)adenos 27.9 3.8E+02 0.0082 28.8 9.8 59 123-200 256-314 (418)
73 PF00331 Glyco_hydro_10: Glyco 27.4 75 0.0016 32.9 4.1 217 60-341 63-312 (320)
74 PRK09989 hypothetical protein; 27.2 6E+02 0.013 24.8 10.8 51 23-74 4-58 (258)
75 PF01301 Glyco_hydro_35: Glyco 27.0 7.2E+02 0.016 25.7 11.7 103 39-146 28-174 (319)
76 PF06180 CbiK: Cobalt chelatas 27.0 5.2E+02 0.011 26.2 10.0 139 33-205 56-211 (262)
77 cd02874 GH18_CFLE_spore_hydrol 26.9 1.9E+02 0.0041 29.4 7.0 83 59-144 48-138 (313)
78 smart00636 Glyco_18 Glycosyl h 26.8 1.7E+02 0.0038 29.8 6.8 80 62-142 57-142 (334)
79 TIGR01574 miaB-methiolase tRNA 26.0 8E+02 0.017 26.4 11.9 61 123-202 279-339 (438)
80 PRK09589 celA 6-phospho-beta-g 25.7 3.6E+02 0.0078 29.7 9.3 44 39-82 71-134 (476)
81 TIGR03820 lys_2_3_AblA lysine- 25.4 6.4E+02 0.014 27.4 10.8 88 42-144 179-277 (417)
82 TIGR01233 lacG 6-phospho-beta- 25.1 2.8E+02 0.006 30.5 8.2 45 38-82 56-119 (467)
83 TIGR01125 MiaB-like tRNA modif 24.6 8.9E+02 0.019 25.9 13.1 62 123-203 267-328 (430)
84 PF00834 Ribul_P_3_epim: Ribul 24.5 4.2E+02 0.0091 25.6 8.5 97 36-148 68-169 (201)
85 PRK13347 coproporphyrinogen II 24.4 91 0.002 33.9 4.3 22 125-146 262-283 (453)
86 PRK14862 rimO ribosomal protei 23.2 9.7E+02 0.021 25.9 12.0 110 41-200 222-336 (440)
87 PRK08091 ribulose-phosphate 3- 22.1 5.6E+02 0.012 25.4 9.0 95 37-145 80-179 (228)
88 TIGR03632 bact_S11 30S ribosom 22.0 1.7E+02 0.0038 25.5 4.8 36 39-74 51-91 (108)
89 PRK14333 (dimethylallyl)adenos 21.5 7.8E+02 0.017 26.6 10.8 61 124-203 288-348 (448)
90 cd02872 GH18_chitolectin_chito 21.1 1.9E+02 0.0041 30.1 5.8 75 68-143 69-151 (362)
91 cd06598 GH31_transferase_CtsZ 21.1 5.6E+02 0.012 26.3 9.2 70 124-201 22-95 (317)
92 PF13670 PepSY_2: Peptidase pr 20.5 2E+02 0.0043 23.4 4.7 21 36-57 30-50 (83)
93 PF13756 Stimulus_sens_1: Stim 20.3 1.3E+02 0.0028 26.4 3.7 25 36-60 2-29 (112)
94 PF02579 Nitro_FeMo-Co: Dinitr 20.0 2E+02 0.0044 23.2 4.7 39 37-75 42-80 (94)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=2.6e-83 Score=652.93 Aligned_cols=310 Identities=51% Similarity=0.865 Sum_probs=256.3
Q ss_pred eeEEecCCCCCCCChHHHHHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecCCCcccccccchhHHHHHHHHhcccc
Q 010931 23 IGANIGTELSDMPHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPNEQLLGIGQSNSTAANWVSRNIVAH 102 (497)
Q Consensus 23 ~GvnYg~~~~~~p~~~~vv~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~~Wv~~~v~~y 102 (497)
||||||+.++|+|+|.++++++|+++|++||||++|+++|+||+++||+|++||+|+++.++++++.+|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHH
Q 010931 103 YPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPML 182 (497)
Q Consensus 103 ~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~l 182 (497)
+|.++|+.|+||||++...... .|+|||+++|++|++.||+++|||+|+++++++..+||||+|.|+.++.++|.+++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~--~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l 158 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA--YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLL 158 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG--GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce--eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHH
Confidence 9999999999999999865433 99999999999999999998899999999999999999999999999999999999
Q ss_pred HHhhhcCCcceecccccccccCCCCccCcccccccCCCCCCccccCCCccccchHHHHHHHHHHHHHHHcCCCCccEEEE
Q 010931 183 NFLQSTGSSLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVMVT 262 (497)
Q Consensus 183 dFL~~t~s~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~~~Y~n~fda~~dav~~A~~~~g~~~~~V~Vs 262 (497)
+||..+++|||+|+||||.|.+++..++||||+|+ ++.+.+|+ +++|+||||+|+|++++||+++|+++++|+|+
T Consensus 159 ~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~---~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ 233 (310)
T PF00332_consen 159 KFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQ---PNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVG 233 (310)
T ss_dssp HHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT----SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEE
T ss_pred HHhhccCCCceeccchhhhccCCcccCCccccccc---cccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEe
Confidence 99999999999999999999999999999999999 56666666 78999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEeecCCCCCCCCCCCccccccCCCCceeee
Q 010931 263 ESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNKPGPLSEKNWGLFDANGDPVYIL 342 (497)
Q Consensus 263 ETGWPS~G~~~~~~As~~na~~y~~~lv~~~~~~~GTp~rpg~~~~~yiF~lFdE~~K~g~~~E~~wGlf~~dg~~ky~l 342 (497)
||||||+|+ ..|+++||+.|++++++|+. +|||+||+..+++||||+|||+||++++.|||||||++||++||++
T Consensus 234 ETGWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~ 308 (310)
T PF00332_consen 234 ETGWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDL 308 (310)
T ss_dssp EE---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS--
T ss_pred ccccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCC
Confidence 999999998 68999999999999999997 7999999999999999999999999988999999999999999999
Q ss_pred ee
Q 010931 343 HL 344 (497)
Q Consensus 343 ~~ 344 (497)
+|
T Consensus 309 ~f 310 (310)
T PF00332_consen 309 DF 310 (310)
T ss_dssp --
T ss_pred CC
Confidence 86
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-42 Score=333.20 Aligned_cols=252 Identities=21% Similarity=0.317 Sum_probs=204.5
Q ss_pred cCCceeEEecCCCCCCCChH--H---HHHHHHhCCCCEEEeccCC----hhHHHHHHhcCCEEEEecCCCcccccccchh
Q 010931 19 EDAFIGANIGTELSDMPHPT--Q---VVALLKAQQIRHVRLYDAD----RGMLVALANTGIKVAVSVPNEQLLGIGQSNS 89 (497)
Q Consensus 19 ~~~~~GvnYg~~~~~~p~~~--~---vv~llk~~~i~~VRlY~~d----~~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~ 89 (497)
..++.+|+|+++.++..||+ + ++++|+..+. .||+|.+| .++++|+...|++|.||||..+..+-+
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~---- 116 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA---- 116 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh----
Confidence 34679999999999988776 3 3677777764 99999987 589999999999999999986533322
Q ss_pred HHHHHHHHhccccCCCCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCccc
Q 010931 90 TAANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAF 169 (497)
Q Consensus 90 aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~ 169 (497)
.++-+...+.+++..+.|++|.||||+|+++..++.+|..+|.++|.+|+.+|++. ||+|+++|.++.+
T Consensus 117 -~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g--pV~T~dsw~~~~~-------- 185 (305)
T COG5309 117 -VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG--PVTTVDSWNVVIN-------- 185 (305)
T ss_pred -HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC--ceeecccceeeeC--------
Confidence 22236677888888999999999999999999999999999999999999999985 8999999988766
Q ss_pred ccCCchhhhHhHHHHhhhcCCcceecccccccccCCCCccCcccccccCCCCCCccccCCCccccchHHHHHHHHHHHHH
Q 010931 170 FNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAM 249 (497)
Q Consensus 170 F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~~~Y~n~fda~~dav~~A~ 249 (497)
++.+++.. |++|+|.||||+..... .+. + .++-.|+.-++.+.
T Consensus 186 -----np~l~~~S-------Dfia~N~~aYwd~~~~a-------------------~~~-----~-~f~~~q~e~vqsa~ 228 (305)
T COG5309 186 -----NPELCQAS-------DFIAANAHAYWDGQTVA-------------------NAA-----G-TFLLEQLERVQSAC 228 (305)
T ss_pred -----ChHHhhhh-------hhhhcccchhccccchh-------------------hhh-----h-HHHHHHHHHHHHhc
Confidence 35555554 55999999999863211 111 1 13445577676552
Q ss_pred HHcCCCCccEEEEeecCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEeecCCCCCC-C-CCC
Q 010931 250 AFLNFTNIPVMVTESGWPSKGDS-NEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNKPG-P-LSE 326 (497)
Q Consensus 250 ~~~g~~~~~V~VsETGWPS~G~~-~~~~As~~na~~y~~~lv~~~~~~~GTp~rpg~~~~~yiF~lFdE~~K~g-~-~~E 326 (497)
| .+|+++|+||||||+|.. +++.||++||+.|.+++++.+++ .++++|+||+|||+||.. . ..|
T Consensus 229 ---g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VE 295 (305)
T COG5309 229 ---G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVE 295 (305)
T ss_pred ---C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchh
Confidence 3 449999999999999997 78999999999999999998876 589999999999999964 3 579
Q ss_pred CccccccCCC
Q 010931 327 KNWGLFDANG 336 (497)
Q Consensus 327 ~~wGlf~~dg 336 (497)
+|||+++.|+
T Consensus 296 kywGv~~s~~ 305 (305)
T COG5309 296 KYWGVLSSDR 305 (305)
T ss_pred hceeeeccCC
Confidence 9999998874
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.96 E-value=9.9e-30 Score=212.55 Aligned_cols=85 Identities=52% Similarity=1.047 Sum_probs=82.9
Q ss_pred eeEEecCCCChHHHHHHhhcccCCCCCCCCccCCCCCccCCCChhhhHhHHHHHHHHhhCCCCCCCcCCCceEEEecCCC
Q 010931 359 TYCTARDGADPKMLQAALDWACGPGKVDCSGLLQGQPCYQPDNVIAHATYAFDTYYHQMRKDPAACNFNGVAAITTSDPS 438 (497)
Q Consensus 359 ~wCv~k~~~~~~~l~~~ld~aCg~~~~dC~~I~~gg~C~~p~t~~~~aSyafN~Yyq~~~~~~~~CdF~G~a~it~~dps 438 (497)
+|||+|+++++++||++|||||+++ +||++|++||+||+|+++++|||||||+|||++++.+++|||+|+|+++++|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred CCceee
Q 010931 439 HGSCIF 444 (497)
Q Consensus 439 ~~~C~~ 444 (497)
+++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999986
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.90 E-value=1.4e-23 Score=211.18 Aligned_cols=237 Identities=23% Similarity=0.378 Sum_probs=135.5
Q ss_pred ceeEEecCCCCC--------CCChH---HHHHHHHhCCCCEEEeccCCh-----hHHHHHHhcCCEEEEecCCCcccccc
Q 010931 22 FIGANIGTELSD--------MPHPT---QVVALLKAQQIRHVRLYDADR-----GMLVALANTGIKVAVSVPNEQLLGIG 85 (497)
Q Consensus 22 ~~GvnYg~~~~~--------~p~~~---~vv~llk~~~i~~VRlY~~d~-----~vL~Ala~tgI~V~lgv~n~~~~~i~ 85 (497)
..||.|.+.++. |..++ +++++||++|++.||+|+.|| .||++|++.||+|+++|..+. .+|.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 479999988772 11222 678999999999999999985 799999999999999999883 4555
Q ss_pred cchhHHHHHHHHh-------ccccCCCCcEEEEEeccccccCCC--CCHHHHHHHHHHHHHHHHhCCCCCceEEeccccc
Q 010931 86 QSNSTAANWVSRN-------IVAHYPATNITTICVGSEVLTTLP--NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSS 156 (497)
Q Consensus 86 ~~~~aa~~Wv~~~-------v~~y~p~~~I~~I~VGNEvl~~~~--~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~ 156 (497)
+.. -+..|-... |..|...+|+.++.+||||++... ..++.+.+++|++|+++++.+++. |||+++.+.
T Consensus 108 r~~-P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~-IPVGYsaaD 185 (314)
T PF03198_consen 108 RSD-PAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRS-IPVGYSAAD 185 (314)
T ss_dssp TTS-------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCC-CcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC-CceeEEccC
Confidence 332 233563333 445556799999999999998753 367899999999999999999976 999998754
Q ss_pred ccccccCCCCcccccCCchhhhHhHHHHhhhc-----CCcceecccccccccCCCCccCcccccccCCCCCCccccCCCc
Q 010931 157 SLILDSFPPSQAFFNRSWNPVLVPMLNFLQST-----GSSLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTL 231 (497)
Q Consensus 157 ~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t-----~s~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~ 231 (497)
. .....++.+||.|. .|++++|.|.|+ +++ .|+ .+|
T Consensus 186 ~-----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WC---g~S--------tf~----~SG------- 226 (314)
T PF03198_consen 186 D-----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWC---GDS--------TFE----TSG------- 226 (314)
T ss_dssp ------------------TTTHHHHHHHTTBTT-----S-EEEEE-------SS----------HH----HHS-------
T ss_pred C-----------------hhHHHHHHHHhcCCCcccccceeeeccceec---CCC--------ccc----ccc-------
Confidence 2 12334678888874 489999999855 332 454 233
Q ss_pred cccchHHHHHHHHHHHHHHHcCCCCccEEEEeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEE
Q 010931 232 VHYSNVFDAMVDAAYFAMAFLNFTNIPVMVTESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYI 311 (497)
Q Consensus 232 ~~Y~n~fda~~dav~~A~~~~g~~~~~V~VsETGWPS~G~~~~~~As~~na~~y~~~lv~~~~~~~GTp~rpg~~~~~yi 311 (497)
|..+.+ .. .+ ..+||+++|+||.+... |+|.+ +..+.+..+|....| ..+
T Consensus 227 --y~~l~~--------~f--~~-y~vPvffSEyGCn~~~p-----------R~f~e--v~aly~~~Mt~v~SG----Giv 276 (314)
T PF03198_consen 227 --YDRLTK--------EF--SN-YSVPVFFSEYGCNTVTP-----------RTFTE--VPALYSPEMTDVWSG----GIV 276 (314)
T ss_dssp --HHHHHH--------HH--TT--SS-EEEEEE---SSSS--------------TH--HHHHTSHHHHTTEEE----EEE
T ss_pred --HHHHHH--------Hh--hC-CCCCeEEcccCCCCCCC-----------ccchH--hHHhhCccchhheec----eEE
Confidence 433222 11 23 47999999999986552 55543 556665555555555 789
Q ss_pred EEeecCCCCCCCCCCCccccccCCCCc
Q 010931 312 YELYNEDNKPGPLSEKNWGLFDANGDP 338 (497)
Q Consensus 312 F~lFdE~~K~g~~~E~~wGlf~~dg~~ 338 (497)
||+|.| +++|||...++..
T Consensus 277 YEy~~e--------~n~yGlV~~~~~~ 295 (314)
T PF03198_consen 277 YEYFQE--------ANNYGLVEISGDG 295 (314)
T ss_dssp S-SB----------SSS--SEEE-TTS
T ss_pred EEEecc--------CCceEEEEEcCCC
Confidence 999998 4789999876653
No 5
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.87 E-value=1.7e-22 Score=166.15 Aligned_cols=73 Identities=40% Similarity=0.777 Sum_probs=61.7
Q ss_pred eeEEecCCCChHHHHHHhhcccCCCCCCCCccCCCCC-----ccCCCChhhhHhHHHHHHHHhhCCCCCCCcCCCceE
Q 010931 359 TYCTARDGADPKMLQAALDWACGPGKVDCSGLLQGQP-----CYQPDNVIAHATYAFDTYYHQMRKDPAACNFNGVAA 431 (497)
Q Consensus 359 ~wCv~k~~~~~~~l~~~ld~aCg~~~~dC~~I~~gg~-----C~~p~t~~~~aSyafN~Yyq~~~~~~~~CdF~G~a~ 431 (497)
+|||+|+++++++||++|||||+++++||++|+++++ .|++|+.++|+|||||+|||++++.+.+|||+|+|+
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 6999999999999999999999998899999999999 555555799999999999999999999999999996
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.06 E-value=1.9e-08 Score=104.03 Aligned_cols=246 Identities=22% Similarity=0.294 Sum_probs=121.8
Q ss_pred hHHHHHHHHhCCCCEEEecc-C--------C-h---hHHHHHHhcCCEEEEecCCCc---------cc-ccc-cchh---
Q 010931 37 PTQVVALLKAQQIRHVRLYD-A--------D-R---GMLVALANTGIKVAVSVPNEQ---------LL-GIG-QSNS--- 89 (497)
Q Consensus 37 ~~~vv~llk~~~i~~VRlY~-~--------d-~---~vL~Ala~tgI~V~lgv~n~~---------~~-~i~-~~~~--- 89 (497)
..+++++||..|++.||+=- . | . .+.+.+++.||+|+|..--+| ++ +.. .+.+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999999887742 1 1 1 345566789999999987643 11 111 1112
Q ss_pred -HHHHHHHHhccccC-CCCcEEEEEeccccccC------CCCCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccc
Q 010931 90 -TAANWVSRNIVAHY-PATNITTICVGSEVLTT------LPNAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILD 161 (497)
Q Consensus 90 -aa~~Wv~~~v~~y~-p~~~I~~I~VGNEvl~~------~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~ 161 (497)
+...+.++-+..+. -+..+..|-||||+-.. .....+.+...++.-.+++|+..-+ +||-.-...
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~~----- 178 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLAN----- 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES------
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEECC-----
Confidence 22223332222221 14678899999998753 1234566777777777777764433 555332110
Q ss_pred cCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccccccCCCCccCcccccccCCCCCCccccCCCccccchHHHHH
Q 010931 162 SFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAM 241 (497)
Q Consensus 162 ~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~~~Y~n~fda~ 241 (497)
|-+...++-=+..+...=++| |+++++.||||... + +-+...
T Consensus 179 --~~~~~~~~~~f~~l~~~g~d~-----DviGlSyYP~w~~~-------l------------------------~~l~~~ 220 (332)
T PF07745_consen 179 --GGDNDLYRWFFDNLKAAGVDF-----DVIGLSYYPFWHGT-------L------------------------EDLKNN 220 (332)
T ss_dssp --TTSHHHHHHHHHHHHHTTGG------SEEEEEE-STTST--------H------------------------HHHHHH
T ss_pred --CCchHHHHHHHHHHHhcCCCc-----ceEEEecCCCCcch-------H------------------------HHHHHH
Confidence 000001110001111112444 99999999998631 0 011222
Q ss_pred HHHHHHHHHHcCCCCccEEEEeecCCCCC---CC--C---------CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCce
Q 010931 242 VDAAYFAMAFLNFTNIPVMVTESGWPSKG---DS--N---------EPDATLENANTYNSNLIRHVLNQTGTPKHPGIGV 307 (497)
Q Consensus 242 ~dav~~A~~~~g~~~~~V~VsETGWPS~G---~~--~---------~~~As~~na~~y~~~lv~~~~~~~GTp~rpg~~~ 307 (497)
++.+ .++. +|||+|.|||||..- +. + .-.+|++.|+.|.+++++.+.+- |- +.+.
T Consensus 221 l~~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~---p~--~~g~ 289 (332)
T PF07745_consen 221 LNDL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV---PN--GGGL 289 (332)
T ss_dssp HHHH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEE
T ss_pred HHHH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh---cc--CCeE
Confidence 2222 2332 589999999999861 11 1 12468999999999999998762 11 2356
Q ss_pred eEEEEEeecCCCC---------CCCCCCCccccccCCCCceeee
Q 010931 308 STYIYELYNEDNK---------PGPLSEKNWGLFDANGDPVYIL 342 (497)
Q Consensus 308 ~~yiF~lFdE~~K---------~g~~~E~~wGlf~~dg~~ky~l 342 (497)
-+|+-| -.|- .|...|.. +||+.+|++--.|
T Consensus 290 GvfYWe---P~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 290 GVFYWE---PAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEEEE----TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred EEEeec---cccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 666654 1222 22223333 8999888764433
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=1.4e-07 Score=94.56 Aligned_cols=255 Identities=21% Similarity=0.300 Sum_probs=137.1
Q ss_pred hHHHHHHHHhCCCCEEEe------ccCC--------h------hHHHHHHhcCCEEEEecCCCcccccccchhHHHHHHH
Q 010931 37 PTQVVALLKAQQIRHVRL------YDAD--------R------GMLVALANTGIKVAVSVPNEQLLGIGQSNSTAANWVS 96 (497)
Q Consensus 37 ~~~vv~llk~~~i~~VRl------Y~~d--------~------~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~~Wv~ 96 (497)
.++.++.||..||+.||+ ||.| . ++-+-+++.||||++..--+|-=+--..+..-.+|..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 346689999999998876 3444 1 3445567899999999876541110011111223433
Q ss_pred Hh-------ccccCC---------CCcEEEEEeccccccC-----CCC-CHHHHHHHHHHHHHHHHhCCCCCceEEeccc
Q 010931 97 RN-------IVAHYP---------ATNITTICVGSEVLTT-----LPN-AAPVLVNALKFIHSALVASNLDHQIKVSTPL 154 (497)
Q Consensus 97 ~~-------v~~y~p---------~~~I~~I~VGNEvl~~-----~~~-~~~~L~~am~~vk~aL~~~gl~~~IkVst~~ 154 (497)
-+ |-.|.+ ...+..|-||||.-.. ++. ....+...++.--++++... ..|||-.-.
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lHl 222 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALHL 222 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEEe
Confidence 22 212211 3567789999998653 111 23334333343344444332 236765433
Q ss_pred ccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccccccCCCCccCcccccccCCCCCCccccCCCcccc
Q 010931 155 SSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHY 234 (497)
Q Consensus 155 s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~~~Y 234 (497)
+ +.-. .+.||--...+-+.-+|| |.|++-.||||... |+ + .
T Consensus 223 a-----~g~~--n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgt-------l~---------n-----------L 263 (403)
T COG3867 223 A-----EGEN--NSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGT-------LN---------N-----------L 263 (403)
T ss_pred c-----CCCC--CchhhHHHHHHHHcCCCc-----eEEeeeccccccCc-------HH---------H-----------H
Confidence 2 2211 233442112333445566 89999999999752 11 0 1
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccEEEEeecC--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-C-
Q 010931 235 SNVFDAMVDAAYFAMAFLNFTNIPVMVTESGW--------------PSKGDSNEPDATLENANTYNSNLIRHVLNQT-G- 298 (497)
Q Consensus 235 ~n~fda~~dav~~A~~~~g~~~~~V~VsETGW--------------PS~G~~~~~~As~~na~~y~~~lv~~~~~~~-G- 298 (497)
++.++++-+ -.+|.|+|.||+. |+.+....-..+++-|++|.+++|+.+.+-- |
T Consensus 264 ~~nl~dia~----------rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~ 333 (403)
T COG3867 264 TTNLNDIAS----------RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSN 333 (403)
T ss_pred HhHHHHHHH----------HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCC
Confidence 122222211 1579999999987 4433322335678889999999999986521 1
Q ss_pred -----------CCCCCCCceeE-EEEEeecCCCCCCCCCCCccccccCCCCceeeee
Q 010931 299 -----------TPKHPGIGVST-YIYELYNEDNKPGPLSEKNWGLFDANGDPVYILH 343 (497)
Q Consensus 299 -----------Tp~rpg~~~~~-yiF~lFdE~~K~g~~~E~~wGlf~~dg~~ky~l~ 343 (497)
.|.++|.++.+ |--++-+|+|+.|...++. -||+.+|.|--.|+
T Consensus 334 GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~ 389 (403)
T COG3867 334 GLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLN 389 (403)
T ss_pred ceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchh
Confidence 13334333332 3334445666655443332 57777777655553
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.51 E-value=1.2e-05 Score=89.92 Aligned_cols=241 Identities=14% Similarity=0.107 Sum_probs=139.9
Q ss_pred HHHHHHHhCCCCEEEecc--CChhHHHHHHhcCCEEEEecCCCcc---------------cccc------cchhHHHHHH
Q 010931 39 QVVALLKAQQIRHVRLYD--ADRGMLVALANTGIKVAVSVPNEQL---------------LGIG------QSNSTAANWV 95 (497)
Q Consensus 39 ~vv~llk~~~i~~VRlY~--~d~~vL~Ala~tgI~V~lgv~n~~~---------------~~i~------~~~~aa~~Wv 95 (497)
++++++|+.|+|.||+-. .++..+.++...||.|+.-++.... +... +..+...+-+
T Consensus 317 ~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (604)
T PRK10150 317 HDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAI 396 (604)
T ss_pred HHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 568899999999999933 3578999999999999976643110 0010 0111222335
Q ss_pred HHhccccCCCCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCch
Q 010931 96 SRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWN 175 (497)
Q Consensus 96 ~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~ 175 (497)
++.|.++.....|..-.+|||.-... ......++.+.+.+++..-++ +|+++.... . +|. .
T Consensus 397 ~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR--~vt~~~~~~---~--~~~--------~ 457 (604)
T PRK10150 397 RELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTR--PVTCVNVMF---A--TPD--------T 457 (604)
T ss_pred HHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCC--ceEEEeccc---C--Ccc--------c
Confidence 66677766566799999999964321 223344555556666555333 677664211 0 010 0
Q ss_pred hhhHhHHHHhhhcCCcceecccccccccCCCCccCcccccccCCCCCCccccCCCccccchHHHHHHHHHHHHHHHcCCC
Q 010931 176 PVLVPMLNFLQSTGSSLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFT 255 (497)
Q Consensus 176 ~~i~~~ldFL~~t~s~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~~~Y~n~fda~~dav~~A~~~~g~~ 255 (497)
..+.+++ |+++.|.|+=|- .+.+ +.+. ....++..++... ++ +
T Consensus 458 ~~~~~~~-------Dv~~~N~Y~~wy--~~~~----~~~~------------------~~~~~~~~~~~~~---~~--~- 500 (604)
T PRK10150 458 DTVSDLV-------DVLCLNRYYGWY--VDSG----DLET------------------AEKVLEKELLAWQ---EK--L- 500 (604)
T ss_pred ccccCcc-------cEEEEcccceec--CCCC----CHHH------------------HHHHHHHHHHHHH---Hh--c-
Confidence 1112233 569999986321 1110 0000 1112232222211 11 2
Q ss_pred CccEEEEeecCCCCCC---CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEeecCCCCCCC--CCCCccc
Q 010931 256 NIPVMVTESGWPSKGD---SNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNEDNKPGP--LSEKNWG 330 (497)
Q Consensus 256 ~~~V~VsETGWPS~G~---~~~~~As~~na~~y~~~lv~~~~~~~GTp~rpg~~~~~yiF~lFdE~~K~g~--~~E~~wG 330 (497)
++|++++|+|+.+.-. .....-+.+.|..|++...+.+.+ +|. -.-.||..+||-....|. ....+.|
T Consensus 501 ~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~G 573 (604)
T PRK10150 501 HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKG 573 (604)
T ss_pred CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcce
Confidence 7999999999765321 111234688888888876665543 343 456899999996554432 1346889
Q ss_pred cccCCCCceeee
Q 010931 331 LFDANGDPVYIL 342 (497)
Q Consensus 331 lf~~dg~~ky~l 342 (497)
|++.||+||-..
T Consensus 574 l~~~dr~~k~~~ 585 (604)
T PRK10150 574 IFTRDRQPKSAA 585 (604)
T ss_pred eEcCCCCChHHH
Confidence 999999998654
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.32 E-value=7.9e-05 Score=73.77 Aligned_cols=123 Identities=17% Similarity=0.074 Sum_probs=82.4
Q ss_pred ceeEEecCCCCCCCChHHHHHHHHhCCCCEEEeccC-------------C-------hhHHHHHHhcCCEEEEecCCCc-
Q 010931 22 FIGANIGTELSDMPHPTQVVALLKAQQIRHVRLYDA-------------D-------RGMLVALANTGIKVAVSVPNEQ- 80 (497)
Q Consensus 22 ~~GvnYg~~~~~~p~~~~vv~llk~~~i~~VRlY~~-------------d-------~~vL~Ala~tgI~V~lgv~n~~- 80 (497)
..|+|-. ..+.. ..+++++.+++.|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566666 22111 6778999999999999999632 1 1588889999999999988741
Q ss_pred ---ccccccchhHHHHHHHH---hcc-ccCCCCcEEEEEeccccccCCCC------CHHHHHHHHHHHHHHHHhCCCCC
Q 010931 81 ---LLGIGQSNSTAANWVSR---NIV-AHYPATNITTICVGSEVLTTLPN------AAPVLVNALKFIHSALVASNLDH 146 (497)
Q Consensus 81 ---~~~i~~~~~aa~~Wv~~---~v~-~y~p~~~I~~I~VGNEvl~~~~~------~~~~L~~am~~vk~aL~~~gl~~ 146 (497)
.............|+++ .+. .|.....|.++-+.||+...... ....+.+.++.+.++|++.+-+.
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 11111222333444433 233 44345668899999999875432 22678899999999999998764
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.48 E-value=0.0084 Score=61.02 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=71.8
Q ss_pred ceeEEecCCCCCC---CChH---HHHHHHHhCCCCEEEecc--CChhHHHHHHhcCCEEEEecCCCcc---ccc------
Q 010931 22 FIGANIGTELSDM---PHPT---QVVALLKAQQIRHVRLYD--ADRGMLVALANTGIKVAVSVPNEQL---LGI------ 84 (497)
Q Consensus 22 ~~GvnYg~~~~~~---p~~~---~vv~llk~~~i~~VRlY~--~d~~vL~Ala~tgI~V~lgv~n~~~---~~i------ 84 (497)
..|||+......+ .+++ ++++++|+.|+|.||+.. .++..+.++...||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 4699988653322 2333 568899999999999964 3579999999999999998876211 111
Q ss_pred ccch---hHHHHHHHHhccccCCCCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEeccc
Q 010931 85 GQSN---STAANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDHQIKVSTPL 154 (497)
Q Consensus 85 ~~~~---~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~ 154 (497)
..++ +...+.+++.|.++.-...|..=.+|||. .....++.+.+.+++.-=++ +|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptR--pv~~~~ 158 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTR--PVTYAS 158 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTS--EEEEET
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC---------ccccchhHHHHHHHhcCCCC--ceeecc
Confidence 1122 23344567777776655679999999999 22333444555554443333 566554
No 11
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.37 E-value=0.021 Score=57.04 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=52.6
Q ss_pred HHHHcCCCCccEEEEeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEeecC-CCCCCCCCC
Q 010931 248 AMAFLNFTNIPVMVTESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYELYNE-DNKPGPLSE 326 (497)
Q Consensus 248 A~~~~g~~~~~V~VsETGWPS~G~~~~~~As~~na~~y~~~lv~~~~~~~GTp~rpg~~~~~yiF~lFdE-~~K~g~~~E 326 (497)
.|++++-.++||.|||++-|..+ +.+.|+.+++++++.+.+. | . ....++..+.|. .|.++
T Consensus 174 ~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~---- 235 (254)
T smart00633 174 ALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG---- 235 (254)
T ss_pred HHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC----
Confidence 33444335799999999998653 3378889999999998863 2 2 233556666653 35442
Q ss_pred CccccccCCCCceeee
Q 010931 327 KNWGLFDANGDPVYIL 342 (497)
Q Consensus 327 ~~wGlf~~dg~~ky~l 342 (497)
.+-|||+.|++||-.+
T Consensus 236 ~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 236 GAPLLFDANYQPKPAY 251 (254)
T ss_pred CCceeECCCCCCChhh
Confidence 4679999999988654
No 12
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.60 E-value=0.21 Score=49.51 Aligned_cols=190 Identities=14% Similarity=0.072 Sum_probs=103.1
Q ss_pred CEEEEecCCCcccccccchhHHHHHHHHhccccCCCCcEEEEEeccccccCC--CCCHHHHHHHHHHHHHHHHhCCCCCc
Q 010931 70 IKVAVSVPNEQLLGIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTL--PNAAPVLVNALKFIHSALVASNLDHQ 147 (497)
Q Consensus 70 I~V~lgv~n~~~~~i~~~~~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~--~~~~~~L~~am~~vk~aL~~~gl~~~ 147 (497)
++-+-.+|...... ..|+++ |... ...++.|..=||+=... ..++++.+...+...+.|+.. .
T Consensus 39 ~efvPmlwg~~~~~--------~~~~~~-v~~~--~~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~----~ 103 (239)
T PF11790_consen 39 LEFVPMLWGPGSDD--------DDWLAN-VQNA--HPGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP----G 103 (239)
T ss_pred eeEeecccCCCCCc--------hHHHHH-HHhh--ccCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC----C
Confidence 67777778654222 123222 3222 34688888889986543 345667777777666666642 3
Q ss_pred eEEecccccccccccCCCCcccccCCchhhhHhHHHHhh--hcCCcceecccccccccCCCCccCcccccccCCCCCCcc
Q 010931 148 IKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQ--STGSSLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEA 225 (497)
Q Consensus 148 IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~--~t~s~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~ 225 (497)
+|+..|.....-.. +|+ -.+-+.+.++-.. +.-|++.||.|. . +
T Consensus 104 ~~l~sPa~~~~~~~--~~~-------g~~Wl~~F~~~~~~~~~~D~iavH~Y~---~--~-------------------- 149 (239)
T PF11790_consen 104 VKLGSPAVAFTNGG--TPG-------GLDWLSQFLSACARGCRVDFIAVHWYG---G--D-------------------- 149 (239)
T ss_pred cEEECCeecccCCC--CCC-------ccHHHHHHHHhcccCCCccEEEEecCC---c--C--------------------
Confidence 78887754211000 010 0122332222221 345777777771 0 0
Q ss_pred ccCCCccccchHHHHHHHHHHHHHHHcCCCCccEEEEeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 010931 226 VDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVMVTESGWPSKGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGI 305 (497)
Q Consensus 226 ~d~~t~~~Y~n~fda~~dav~~A~~~~g~~~~~V~VsETGWPS~G~~~~~~As~~na~~y~~~lv~~~~~~~GTp~rpg~ 305 (497)
++...+.+....++.| +||+|||.|+...+ ...+.+.++.|.+..+..+.+. +.
T Consensus 150 ------------~~~~~~~i~~~~~~~~---kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~~- 203 (239)
T PF11790_consen 150 ------------ADDFKDYIDDLHNRYG---KPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQ------PY- 203 (239)
T ss_pred ------------HHHHHHHHHHHHHHhC---CCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcC------CC-
Confidence 1111222222334433 99999999987622 3678889999999999988652 22
Q ss_pred ceeEEEEEeecCCCCCCCCCCCccccccCCCCc
Q 010931 306 GVSTYIYELYNEDNKPGPLSEKNWGLFDANGDP 338 (497)
Q Consensus 306 ~~~~yiF~lFdE~~K~g~~~E~~wGlf~~dg~~ 338 (497)
--.+++|. |..++. ....+-.|++.+|++
T Consensus 204 VeryawF~-~~~~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 204 VERYAWFG-FMNDGS---GVNPNSALLDADGSL 232 (239)
T ss_pred eeEEEecc-cccccC---CCccccccccCCCCc
Confidence 23456666 222222 235666777777753
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=96.52 E-value=0.23 Score=53.65 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCEEEecc------------CC-------hhHHHHHHhcCCEEEEecCCC
Q 010931 39 QVVALLKAQQIRHVRLYD------------AD-------RGMLVALANTGIKVAVSVPNE 79 (497)
Q Consensus 39 ~vv~llk~~~i~~VRlY~------------~d-------~~vL~Ala~tgI~V~lgv~n~ 79 (497)
+++++|+++|++++|+== .| ..++..+.+.||+++|.+.--
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hf 117 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHW 117 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccC
Confidence 789999999999998621 12 268999999999999999543
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.14 E-value=0.025 Score=61.40 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=65.9
Q ss_pred HHHHHHHhCCCCEEEecc-------------CC-------hhHHHHHHhcCCEEEEecCCCcccc-cc-----cchhHHH
Q 010931 39 QVVALLKAQQIRHVRLYD-------------AD-------RGMLVALANTGIKVAVSVPNEQLLG-IG-----QSNSTAA 92 (497)
Q Consensus 39 ~vv~llk~~~i~~VRlY~-------------~d-------~~vL~Ala~tgI~V~lgv~n~~~~~-i~-----~~~~aa~ 92 (497)
+++++||++|++..|+== .| .+++..|...||+.+|.+.--+++. +. .+++ ..
T Consensus 62 eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~-~~ 140 (455)
T PF00232_consen 62 EDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRE-TV 140 (455)
T ss_dssp HHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTH-HH
T ss_pred HHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHH-HH
Confidence 899999999999998631 12 2699999999999999998544432 11 1112 22
Q ss_pred HHHHHh----ccccCCCCcEEEEEeccccccC-------C---C--CC-------HHHHHHHHHHHHHHHHhCCCCCceE
Q 010931 93 NWVSRN----IVAHYPATNITTICVGSEVLTT-------L---P--NA-------APVLVNALKFIHSALVASNLDHQIK 149 (497)
Q Consensus 93 ~Wv~~~----v~~y~p~~~I~~I~VGNEvl~~-------~---~--~~-------~~~L~~am~~vk~aL~~~gl~~~Ik 149 (497)
.|..+- +..| .+.|+..+.=||+..- + + .. .-.++-|-..+.+++++.+-+ -+
T Consensus 141 ~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~~ 216 (455)
T PF00232_consen 141 DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--GK 216 (455)
T ss_dssp HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--SE
T ss_pred HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--eE
Confidence 222222 1222 4678888888997641 1 1 11 123555555566666665533 57
Q ss_pred Eecccccc
Q 010931 150 VSTPLSSS 157 (497)
Q Consensus 150 Vst~~s~~ 157 (497)
|+.+++..
T Consensus 217 IGi~~~~~ 224 (455)
T PF00232_consen 217 IGIALNFS 224 (455)
T ss_dssp EEEEEEEE
T ss_pred Eecccccc
Confidence 77766654
No 15
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.00 E-value=0.21 Score=59.59 Aligned_cols=97 Identities=19% Similarity=0.139 Sum_probs=62.9
Q ss_pred ceeEEecCCCCC---CCChH---HHHHHHHhCCCCEEEecc--CChhHHHHHHhcCCEEEEecCCCcc--------cccc
Q 010931 22 FIGANIGTELSD---MPHPT---QVVALLKAQQIRHVRLYD--ADRGMLVALANTGIKVAVSVPNEQL--------LGIG 85 (497)
Q Consensus 22 ~~GvnYg~~~~~---~p~~~---~vv~llk~~~i~~VRlY~--~d~~vL~Ala~tgI~V~lgv~n~~~--------~~i~ 85 (497)
..|+|+-..... ..+++ ++++++|+.|+|.||+-. .++..+.++...||.|+.-++.+.- ..+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 468887543221 12333 668999999999999864 2467899999999999986542210 0122
Q ss_pred cch---hHHHHHHHHhccccCCCCcEEEEEeccccc
Q 010931 86 QSN---STAANWVSRNIVAHYPATNITTICVGSEVL 118 (497)
Q Consensus 86 ~~~---~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl 118 (497)
.++ ++..+-+++.|.++.-...|..-++|||.-
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 222 122334666677665556799999999974
No 16
>PLN02998 beta-glucosidase
Probab=94.54 E-value=4.9 Score=44.39 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCCEEEe-------cc-----CC-------hhHHHHHHhcCCEEEEecCCCccc
Q 010931 39 QVVALLKAQQIRHVRL-------YD-----AD-------RGMLVALANTGIKVAVSVPNEQLL 82 (497)
Q Consensus 39 ~vv~llk~~~i~~VRl-------Y~-----~d-------~~vL~Ala~tgI~V~lgv~n~~~~ 82 (497)
++++++|++|++.-|+ += .| ..++.+|.+.||+-+|.+.--+++
T Consensus 86 EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP 148 (497)
T PLN02998 86 EDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLP 148 (497)
T ss_pred HHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 7899999999887774 21 13 269999999999999999865544
No 17
>PLN02814 beta-glucosidase
Probab=94.10 E-value=5.7 Score=43.96 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCCEEEe-------cc-----CC-------hhHHHHHHhcCCEEEEecCCCccc
Q 010931 39 QVVALLKAQQIRHVRL-------YD-----AD-------RGMLVALANTGIKVAVSVPNEQLL 82 (497)
Q Consensus 39 ~vv~llk~~~i~~VRl-------Y~-----~d-------~~vL~Ala~tgI~V~lgv~n~~~~ 82 (497)
+++++||++|++.-|. += .| ..++.+|.+.||+-+|.+.--+++
T Consensus 81 EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 81 EDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred HHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 7899999999877764 31 13 269999999999999999865544
No 18
>PLN02849 beta-glucosidase
Probab=93.17 E-value=7.9 Score=42.85 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCCEEEe-------cc-----CC-------hhHHHHHHhcCCEEEEecCCCccc
Q 010931 39 QVVALLKAQQIRHVRL-------YD-----AD-------RGMLVALANTGIKVAVSVPNEQLL 82 (497)
Q Consensus 39 ~vv~llk~~~i~~VRl-------Y~-----~d-------~~vL~Ala~tgI~V~lgv~n~~~~ 82 (497)
++++|||++|++.-|+ +- .| .+++.++.+.||+-+|.+.--+++
T Consensus 83 eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 83 EDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 7899999999877764 32 13 269999999999999999855443
No 19
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=92.28 E-value=21 Score=39.30 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCEEEe-------cc------CC-------hhHHHHHHhcCCEEEEecCCCccc
Q 010931 38 TQVVALLKAQQIRHVRL-------YD------AD-------RGMLVALANTGIKVAVSVPNEQLL 82 (497)
Q Consensus 38 ~~vv~llk~~~i~~VRl-------Y~------~d-------~~vL~Ala~tgI~V~lgv~n~~~~ 82 (497)
+++++|||++|++.-|+ +- .| ..++.+|.+.||+-+|.+.--+++
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP 140 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCP 140 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 38999999999877774 21 13 268999999999999999855544
No 20
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=90.32 E-value=1.8 Score=45.57 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCCEEEeccCC----------------hhHHHHHHhcCCEEEEecCCCcc--------cc----------
Q 010931 38 TQVVALLKAQQIRHVRLYDAD----------------RGMLVALANTGIKVAVSVPNEQL--------LG---------- 83 (497)
Q Consensus 38 ~~vv~llk~~~i~~VRlY~~d----------------~~vL~Ala~tgI~V~lgv~n~~~--------~~---------- 83 (497)
+++++++|+.|++.|||-... ..+|+.+++.||+|+|+++.... +.
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 478999999999999984321 26889999999999999974311 00
Q ss_pred --ccc-------c---hhHHHHHHHHhccccCCCCcEEEEEeccccccC
Q 010931 84 --IGQ-------S---NSTAANWVSRNIVAHYPATNITTICVGSEVLTT 120 (497)
Q Consensus 84 --i~~-------~---~~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~ 120 (497)
... + .+.+.+.+++.+..|-....|.++.|.||.-..
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 000 0 123555566655667656789999999998663
No 21
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=89.55 E-value=37 Score=37.38 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCEEEe-------cc------CC-------hhHHHHHHhcCCEEEEecCCCc
Q 010931 38 TQVVALLKAQQIRHVRL-------YD------AD-------RGMLVALANTGIKVAVSVPNEQ 80 (497)
Q Consensus 38 ~~vv~llk~~~i~~VRl-------Y~------~d-------~~vL~Ala~tgI~V~lgv~n~~ 80 (497)
+++++|||++|++.-|+ +- .| ..++.+|.+.||+.+|.+.=-+
T Consensus 72 ~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~d 134 (477)
T PRK15014 72 KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFE 134 (477)
T ss_pred HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCC
Confidence 38999999998877764 31 13 2699999999999999996433
No 22
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=86.59 E-value=56 Score=35.99 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCCEEEe-------cc------CC-------hhHHHHHHhcCCEEEEecCCCccc
Q 010931 38 TQVVALLKAQQIRHVRL-------YD------AD-------RGMLVALANTGIKVAVSVPNEQLL 82 (497)
Q Consensus 38 ~~vv~llk~~~i~~VRl-------Y~------~d-------~~vL~Ala~tgI~V~lgv~n~~~~ 82 (497)
++++++|+++|++..|+ +- .| ..++.++.+.||+.+|.+.--+++
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P 138 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVP 138 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 38899999999877764 21 13 269999999999999999865544
No 23
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=83.08 E-value=6.5 Score=47.22 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=63.6
Q ss_pred ceeEEecCCCCC---CCChH---HHHHHHHhCCCCEEEecc--CChhHHHHHHhcCCEEEEecCCCcc-----cccccch
Q 010931 22 FIGANIGTELSD---MPHPT---QVVALLKAQQIRHVRLYD--ADRGMLVALANTGIKVAVSVPNEQL-----LGIGQSN 88 (497)
Q Consensus 22 ~~GvnYg~~~~~---~p~~~---~vv~llk~~~i~~VRlY~--~d~~vL~Ala~tgI~V~lgv~n~~~-----~~i~~~~ 88 (497)
..|+|+-..... ..+++ ++++++|+.|+|.||+-. -++..++++...||.|+--++.+.- ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 468887643221 12344 578999999999999944 3578999999999999988764210 1122222
Q ss_pred h---HHHHHHHHhccccCCCCcEEEEEeccccc
Q 010931 89 S---TAANWVSRNIVAHYPATNITTICVGSEVL 118 (497)
Q Consensus 89 ~---aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl 118 (497)
. +..+-+++.|.+..-...|..-++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1 22333555566655556799999999963
No 24
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=82.83 E-value=26 Score=38.45 Aligned_cols=249 Identities=16% Similarity=0.156 Sum_probs=112.0
Q ss_pred HHHHhCCCCEEEeccC--C---------------------hhHHHHHHhcCCEEEEecCCC--cccc-----cc------
Q 010931 42 ALLKAQQIRHVRLYDA--D---------------------RGMLVALANTGIKVAVSVPNE--QLLG-----IG------ 85 (497)
Q Consensus 42 ~llk~~~i~~VRlY~~--d---------------------~~vL~Ala~tgI~V~lgv~n~--~~~~-----i~------ 85 (497)
.+.+..||+.||+... | -.++..+.+.||+-+|-+--. .+.+ ..
T Consensus 47 ~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~~~ 126 (486)
T PF01229_consen 47 ELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGNIS 126 (486)
T ss_dssp HHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE-S
T ss_pred HHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCCcC
Confidence 3334689999999752 1 158889999999987766421 1110 00
Q ss_pred --cchhH----HHHHHHHhccccCCCCcEE--EEEeccccccCC---CCCHHHHHHHHHHHHHHHHhCCCCCceEEeccc
Q 010931 86 --QSNST----AANWVSRNIVAHYPATNIT--TICVGSEVLTTL---PNAAPVLVNALKFIHSALVASNLDHQIKVSTPL 154 (497)
Q Consensus 86 --~~~~a----a~~Wv~~~v~~y~p~~~I~--~I~VGNEvl~~~---~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~ 154 (497)
.+... ..++++..+.+|-- ..|. .+=|=||+=... .....+-....+.+.++||+.. ..+||+-|-
T Consensus 127 pp~~~~~W~~lv~~~~~h~~~RYG~-~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~ 203 (486)
T PF01229_consen 127 PPKDYEKWRDLVRAFARHYIDRYGI-EEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPA 203 (486)
T ss_dssp -BS-HHHHHHHHHHHHHHHHHHHHH-HHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEE
T ss_pred CcccHHHHHHHHHHHHHHHHhhcCC-ccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCcc
Confidence 11222 22233333344411 1111 456788864432 1233455666677777777765 238999771
Q ss_pred ccccccccCCCCcccccCCchhhhHhHHHHhhhc---CCcceecccccccccCCCCccCcccccccCCCCCCccccCCCc
Q 010931 155 SSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQST---GSSLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTL 231 (497)
Q Consensus 155 s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t---~s~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~ 231 (497)
.. . .....+...++|.... -|++..|.||+=...... ......-.
T Consensus 204 ~~----~-----------~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~----------------~~~~~~~~- 251 (486)
T PF01229_consen 204 FA----W-----------AYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN----------------ENMYERIE- 251 (486)
T ss_dssp EE----T-----------T-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-S----------------S-EEEEB--
T ss_pred cc----c-----------cHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccc----------------hhHHhhhh-
Confidence 10 0 0123355666776543 488899999843211000 00000000
Q ss_pred cccchHHHHHHHHHHHHHHHcCCCCccEEEEeecCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEE
Q 010931 232 VHYSNVFDAMVDAAYFAMAFLNFTNIPVMVTESGWPSKGDS-NEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTY 310 (497)
Q Consensus 232 ~~Y~n~fda~~dav~~A~~~~g~~~~~V~VsETGWPS~G~~-~~~~As~~na~~y~~~lv~~~~~~~GTp~rpg~~~~~y 310 (497)
....+++... .+...+...+++++++.++| |.+.-.. +.-.-|.-+|+-..+++++.... .++.|
T Consensus 252 -~~~~~~~~~~-~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~ 317 (486)
T PF01229_consen 252 -DSRRLFPELK-ETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSF 317 (486)
T ss_dssp --HHHHHHHHH-HHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEE
T ss_pred -hHHHHHHHHH-HHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhh
Confidence 0111222222 22233445577899999999 7764332 22234455566555555555421 23332
Q ss_pred EE----EeecCCCCCCCCCCCccccccCCCCce
Q 010931 311 IY----ELYNEDNKPGPLSEKNWGLFDANGDPV 339 (497)
Q Consensus 311 iF----~lFdE~~K~g~~~E~~wGlf~~dg~~k 339 (497)
-| ..|.|.-.+....-..|||++.+|-+|
T Consensus 318 sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 318 SYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp EES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred hccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 22 245554333333566799999998555
No 25
>PRK09936 hypothetical protein; Provisional
Probab=72.40 E-value=24 Score=36.35 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=51.4
Q ss_pred CceeEEecCCCCCC-CChH---HHHHHHHhCCCCEEEe-c----cCC--------hhHHHHHHhcCCEEEEecCCCc--c
Q 010931 21 AFIGANIGTELSDM-PHPT---QVVALLKAQQIRHVRL-Y----DAD--------RGMLVALANTGIKVAVSVPNEQ--L 81 (497)
Q Consensus 21 ~~~GvnYg~~~~~~-p~~~---~vv~llk~~~i~~VRl-Y----~~d--------~~vL~Ala~tgI~V~lgv~n~~--~ 81 (497)
+..|+=|.+...+. -+++ +..+.++.+|++++=+ | +.| ...|+++.+.||+|.||++-|. -
T Consensus 20 a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~ 99 (296)
T PRK09936 20 AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFF 99 (296)
T ss_pred ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHH
Confidence 34567799997773 2444 5677888899976644 2 223 3688889999999999999874 1
Q ss_pred cccccchhHHHHHHHHh
Q 010931 82 LGIGQSNSTAANWVSRN 98 (497)
Q Consensus 82 ~~i~~~~~aa~~Wv~~~ 98 (497)
..+..+..+-++|++..
T Consensus 100 q~~~~d~~~~~~yl~~~ 116 (296)
T PRK09936 100 MHQKQDGAALESYLNRQ 116 (296)
T ss_pred HHHhcCchhHHHHHHHH
Confidence 22333444444555543
No 26
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=72.31 E-value=23 Score=37.28 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCCEEEecc-CChhHHHHHHhcCCEEEEecCCCcccccccchhHHHHHHHHhccccCCCCcEEEEEeccccccC-CCCCH
Q 010931 48 QIRHVRLYD-ADRGMLVALANTGIKVAVSVPNEQLLGIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTT-LPNAA 125 (497)
Q Consensus 48 ~i~~VRlY~-~d~~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~-~~~~~ 125 (497)
.+++|-+|+ .|++++..+...|++|++..-.. .+.+ .+++.-.+++++.| .+...-...+|-+==|-... .....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 468888886 47899999999999999864322 2223 24333334544433 22222245566554443321 12234
Q ss_pred HHHHHHHHHHHHHHHhCCCC
Q 010931 126 PVLVNALKFIHSALVASNLD 145 (497)
Q Consensus 126 ~~L~~am~~vk~aL~~~gl~ 145 (497)
..+..-|+.+|++|++.+..
T Consensus 132 ~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 132 YALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCC
Confidence 57889999999999987644
No 27
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=72.27 E-value=14 Score=40.44 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=46.2
Q ss_pred HHHHHHhccccCCCCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEecc
Q 010931 92 ANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDHQIKVSTP 153 (497)
Q Consensus 92 ~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~ 153 (497)
.+.|...|.+|--...|.+-..-||.+-+.+.....++...+.+.++|+..+=+.-|.|+-+
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~ 184 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDP 184 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCc
Confidence 45677777777656678888889997776677778899999999999988775543444433
No 28
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=65.34 E-value=8.1 Score=36.38 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=27.4
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecC
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVP 77 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~ 77 (497)
.++|+.+||++||+.+.+|.-+.+|.+.||+|.=-+|
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 7899999999999999999999999999999975544
No 29
>PLN03059 beta-galactosidase; Provisional
Probab=64.84 E-value=1.5e+02 Score=35.07 Aligned_cols=116 Identities=8% Similarity=0.001 Sum_probs=74.0
Q ss_pred HHHHHHHhCCCCEEEeccC-----------C-------hhHHHHHHhcCCEEEEec---------------CCCcccc--
Q 010931 39 QVVALLKAQQIRHVRLYDA-----------D-------RGMLVALANTGIKVAVSV---------------PNEQLLG-- 83 (497)
Q Consensus 39 ~vv~llk~~~i~~VRlY~~-----------d-------~~vL~Ala~tgI~V~lgv---------------~n~~~~~-- 83 (497)
+.++.+|+.|++.|-+|-. | ..-|+.+++.|++|+|=. |.-..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 5678899999999999852 1 257788889999999843 2111111
Q ss_pred cc-cch---hHHHHHHHHhcccc-------CCCCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEec
Q 010931 84 IG-QSN---STAANWVSRNIVAH-------YPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDHQIKVST 152 (497)
Q Consensus 84 i~-~~~---~aa~~Wv~~~v~~y-------~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst 152 (497)
+. .++ ++.++|+...+... -..-.|..+=|-||-=.-.......=..+|+.+++.+++.|++ ||.-|
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t 220 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG--VPWVM 220 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC--cceEE
Confidence 11 122 35667776654322 1145799999999953210000012377999999999999985 67777
Q ss_pred cccc
Q 010931 153 PLSS 156 (497)
Q Consensus 153 ~~s~ 156 (497)
.+..
T Consensus 221 ~dg~ 224 (840)
T PLN03059 221 CKQE 224 (840)
T ss_pred CCCC
Confidence 6653
No 30
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=64.03 E-value=65 Score=34.42 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccccc
Q 010931 123 NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDY 202 (497)
Q Consensus 123 ~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~ 202 (497)
.+......+++.+|+.. .| +.|++..-. +|| .+-.+.+...++|+.+.. +-.+++|||--+
T Consensus 270 ~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P-------gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 270 YTRDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP-------GESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred CCHHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC-------CCCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 45677888888888742 22 445443221 232 111345677888887654 456677776544
Q ss_pred c
Q 010931 203 M 203 (497)
Q Consensus 203 ~ 203 (497)
-
T Consensus 331 p 331 (414)
T TIGR01579 331 P 331 (414)
T ss_pred C
Confidence 3
No 31
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=62.07 E-value=26 Score=36.63 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=37.5
Q ss_pred hHHHHHHhcCCEEEEecCCCcccccccchhHHHHHHHHhccccCC-----CCcEEEEEeccccccCC---CCCHHHHHHH
Q 010931 60 GMLVALANTGIKVAVSVPNEQLLGIGQSNSTAANWVSRNIVAHYP-----ATNITTICVGSEVLTTL---PNAAPVLVNA 131 (497)
Q Consensus 60 ~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~~Wv~~~v~~y~p-----~~~I~~I~VGNEvl~~~---~~~~~~L~~a 131 (497)
.+-+-+..+|.+|+.|+.--.-.....+....-.|-.+|-..++. .=+|.+-=.|||.-... ..++.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 344445689999999997321111111123456788888654432 23688888999976432 2356778777
Q ss_pred HHHHHHHHHh
Q 010931 132 LKFIHSALVA 141 (497)
Q Consensus 132 m~~vk~aL~~ 141 (497)
...+|+.|+.
T Consensus 193 ~~~Lr~il~~ 202 (319)
T PF03662_consen 193 FIQLRKILNE 202 (319)
T ss_dssp H---HHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777765
No 32
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=61.88 E-value=41 Score=39.48 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=68.9
Q ss_pred ceeEEecCCCCCCC------ChHHHHHHHHhCCCCEEEecc--CChhHHHHHHhcCCEEEEecCCCc--ccccccchhHH
Q 010931 22 FIGANIGTELSDMP------HPTQVVALLKAQQIRHVRLYD--ADRGMLVALANTGIKVAVSVPNEQ--LLGIGQSNSTA 91 (497)
Q Consensus 22 ~~GvnYg~~~~~~p------~~~~vv~llk~~~i~~VRlY~--~d~~vL~Ala~tgI~V~lgv~n~~--~~~i~~~~~aa 91 (497)
..|+|.-....-+- ...++++++|+.++|.||+.. -++.-++.+...||.|+--..... .+.-..-.+.+
T Consensus 302 ~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~ 381 (808)
T COG3250 302 IRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEV 381 (808)
T ss_pred EeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHH
Confidence 45888776544321 134678999999999999985 236788888999999998776432 11000111233
Q ss_pred HHHHHHhccccCCCCcEEEEEeccccccCCCCCHHHHHHHHHHHHHH
Q 010931 92 ANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSA 138 (497)
Q Consensus 92 ~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~a 138 (497)
..-+++.|.+.--...|.--++|||.-.. .....+.+.+++.
T Consensus 382 ~~~i~~mver~knHPSIiiWs~gNE~~~g-----~~~~~~~~~~k~~ 423 (808)
T COG3250 382 SEEVRRMVERDRNHPSIIIWSLGNESGHG-----SNHWALYRWFKAS 423 (808)
T ss_pred HHHHHHHHHhccCCCcEEEEeccccccCc-----cccHHHHHHHhhc
Confidence 33455556543323468889999997542 2344444444443
No 33
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=61.39 E-value=1e+02 Score=28.92 Aligned_cols=100 Identities=15% Similarity=0.006 Sum_probs=57.0
Q ss_pred HHHHHHHhCCCCEEEe----------ccCC--------------hhHHHHHHhcCCEEEEecCCCcccccccchhHHH--
Q 010931 39 QVVALLKAQQIRHVRL----------YDAD--------------RGMLVALANTGIKVAVSVPNEQLLGIGQSNSTAA-- 92 (497)
Q Consensus 39 ~vv~llk~~~i~~VRl----------Y~~d--------------~~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~-- 92 (497)
+.++.||+.||+.|=+ |.++ ..+|+++...||+|++|++.+..-.-..+.+...
T Consensus 24 ~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~ 103 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAER 103 (166)
T ss_pred HHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHH
Confidence 6788999999988722 2221 2688999999999999999652110012211110
Q ss_pred -HHHHHhc-cccCCCCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhC
Q 010931 93 -NWVSRNI-VAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVAS 142 (497)
Q Consensus 93 -~Wv~~~v-~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~ 142 (497)
+-+.+.+ ..|....-+.+-=+-.|+=... ....++.+.+.+.|+..
T Consensus 104 ~~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 104 NKQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHHHHHHHHHh
Confidence 1122222 2343334577777777765432 23355666666666654
No 34
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.97 E-value=29 Score=36.83 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCccEEEEeecCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHhc
Q 010931 234 YSNVFDAMVDAAYFAMAFLNFTNIPVMVTESGWPSKGDS---NEPDATLENANTYNSNLIRHVLNQ 296 (497)
Q Consensus 234 Y~n~fda~~dav~~A~~~~g~~~~~V~VsETGWPS~G~~---~~~~As~~na~~y~~~lv~~~~~~ 296 (497)
|.|-|++-+-.........|+..++|+++ |||.|.. +--..|...++.-.+++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 55666644333322334457788999998 9999974 223466666777778888888764
No 35
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=58.83 E-value=15 Score=35.27 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.3
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEE
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAV 74 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~l 74 (497)
.++|+.+||++||+.+.++.=+.+|.+.||+|.=
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv~ 164 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIVE 164 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEE
Confidence 7899999999999999998888899999999973
No 36
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=58.45 E-value=76 Score=34.01 Aligned_cols=106 Identities=10% Similarity=0.026 Sum_probs=63.3
Q ss_pred HHHHHHHHhCCCCEEEeccC----------Ch------------hHHHHHHhcCCEEEEecCCCc-------c----ccc
Q 010931 38 TQVVALLKAQQIRHVRLYDA----------DR------------GMLVALANTGIKVAVSVPNEQ-------L----LGI 84 (497)
Q Consensus 38 ~~vv~llk~~~i~~VRlY~~----------d~------------~vL~Ala~tgI~V~lgv~n~~-------~----~~i 84 (497)
++++..+|+.|+++||+.-. +| .+++.+.+.||+|++.+-... . ...
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 46788999999999999743 32 356778899999999954321 1 111
Q ss_pred ccc----hhHHHHHHHHhccccCCCCcEEEEEecccccc-CCCCCHHHH-HHHHHHHHHHHHhCCC
Q 010931 85 GQS----NSTAANWVSRNIVAHYPATNITTICVGSEVLT-TLPNAAPVL-VNALKFIHSALVASNL 144 (497)
Q Consensus 85 ~~~----~~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~-~~~~~~~~L-~~am~~vk~aL~~~gl 144 (497)
..+ ......| +....+|-....|.+|-+=||+.. ..+..+..- -+|..-|++.+.+...
T Consensus 156 ~~~~~~~~~~~~~w-~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~~ 220 (407)
T COG2730 156 KEENENVEATIDIW-KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNAP 220 (407)
T ss_pred cccchhHHHHHHHH-HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcCc
Confidence 110 1112222 111234444678888999999984 111122222 5888888776665543
No 37
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=58.20 E-value=16 Score=35.37 Aligned_cols=37 Identities=32% Similarity=0.528 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecC
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVP 77 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~ 77 (497)
.++|+.+||+++|+.+.++.-+.+|.+.||+|.=-++
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~~ 170 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERVP 170 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999998888899999999983333
No 38
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=52.32 E-value=17 Score=38.63 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=31.2
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEec
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSV 76 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv 76 (497)
.++|+.+||++||+. .||.=+.+|.+.||+|.==+
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEe
Confidence 789999999999999 78999999999999997433
No 39
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=51.52 E-value=3.6e+02 Score=29.94 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=51.9
Q ss_pred hcCCEEEEecCCC--------cc---cccccc-----hhHHHHHHHHhccccCC-CCcEEEEEeccccccCC------C-
Q 010931 67 NTGIKVAVSVPNE--------QL---LGIGQS-----NSTAANWVSRNIVAHYP-ATNITTICVGSEVLTTL------P- 122 (497)
Q Consensus 67 ~tgI~V~lgv~n~--------~~---~~i~~~-----~~aa~~Wv~~~v~~y~p-~~~I~~I~VGNEvl~~~------~- 122 (497)
+.+|+|+..-|-. .. ..+... .++=...+.+-|+.|.. +.+|-+|.+.||+.... +
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 4569999998843 11 112111 12333456666666654 47899999999998621 1
Q ss_pred --CCHHHHHHHHHH-HHHHHHhCCCCCceEEec-ccc
Q 010931 123 --NAAPVLVNALKF-IHSALVASNLDHQIKVST-PLS 155 (497)
Q Consensus 123 --~~~~~L~~am~~-vk~aL~~~gl~~~IkVst-~~s 155 (497)
-++++...-|++ +.-+|++.|+..++||-. .|+
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n 282 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHN 282 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecC
Confidence 246677777876 899999999844477643 443
No 40
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=50.45 E-value=51 Score=25.48 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=35.4
Q ss_pred CChHHHHHHHHhCCCCEEEeccCC-----hhHHHHHHhcCCEEEEecCC
Q 010931 35 PHPTQVVALLKAQQIRHVRLYDAD-----RGMLVALANTGIKVAVSVPN 78 (497)
Q Consensus 35 p~~~~vv~llk~~~i~~VRlY~~d-----~~vL~Ala~tgI~V~lgv~n 78 (497)
-++++.++..+++|++.|=+=|-+ +...+.+++.||+|+.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 468889999999999888776655 45667778899999999853
No 41
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=49.18 E-value=39 Score=37.06 Aligned_cols=45 Identities=7% Similarity=0.163 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCEEEe-------cc-----CC-------hhHHHHHHhcCCEEEEecCCCccc
Q 010931 38 TQVVALLKAQQIRHVRL-------YD-----AD-------RGMLVALANTGIKVAVSVPNEQLL 82 (497)
Q Consensus 38 ~~vv~llk~~~i~~VRl-------Y~-----~d-------~~vL~Ala~tgI~V~lgv~n~~~~ 82 (497)
+++++|||++|++.-|+ += .| ..++.+|.+.||+-+|.+.--+++
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 38999999999887774 21 12 269999999999999999865544
No 42
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=48.55 E-value=28 Score=33.50 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=32.5
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecC
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVP 77 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~ 77 (497)
.++|+.+|++++|+.+.++.=+.+|.+.||+|.=-++
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~~ 169 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERVP 169 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999988788899999999984443
No 43
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=48.51 E-value=30 Score=35.55 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=53.4
Q ss_pred CCcEEEEEeccccc--cC--CC----CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcc----cccC
Q 010931 105 ATNITTICVGSEVL--TT--LP----NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQA----FFNR 172 (497)
Q Consensus 105 ~~~I~~I~VGNEvl--~~--~~----~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~----~F~~ 172 (497)
...|.+++||+|-. ++ .. .....|..-+.+||+.| | ...|||++..|+.+.. +.|..| .|+-
T Consensus 17 aggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~L 90 (299)
T PF13547_consen 17 AGGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFHL 90 (299)
T ss_pred cCCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCcccccC
Confidence 35789999999965 22 21 12457888888888876 2 2379999999988765 444433 3442
Q ss_pred CchhhhHhHHHHhhhcCCcceeccc-cccccc
Q 010931 173 SWNPVLVPMLNFLQSTGSSLMLNIY-PYYDYM 203 (497)
Q Consensus 173 ~~~~~i~~~ldFL~~t~s~~~vNiY-Pyf~~~ 203 (497)
| ++=. ...-|+++|+.| |-=++.
T Consensus 91 D--pLWa------~~~IDfIGID~Y~PLSDwr 114 (299)
T PF13547_consen 91 D--PLWA------DPNIDFIGIDNYFPLSDWR 114 (299)
T ss_pred c--cccc------CCcCCEEEeecccccCCCC
Confidence 2 2211 124467999998 444443
No 44
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=48.48 E-value=22 Score=37.87 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=32.1
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecC
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVP 77 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~ 77 (497)
.++|+.+||++||+.. ||.=..+|.+.||+|.==++
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 7899999999999999 99999999999999984443
No 45
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=47.22 E-value=48 Score=32.71 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=26.7
Q ss_pred HHcCCCCccEEEEeecCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHh
Q 010931 250 AFLNFTNIPVMVTESGWPSKGDSN---EPDATLENANTYNSNLIRHVLN 295 (497)
Q Consensus 250 ~~~g~~~~~V~VsETGWPS~G~~~---~~~As~~na~~y~~~lv~~~~~ 295 (497)
..+++++++|.++ |||.|... ....+...++..+.++++.+..
T Consensus 43 ~~~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4567777666665 99998742 2233444555556666666654
No 46
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=44.39 E-value=30 Score=36.47 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=30.9
Q ss_pred HHHHHhCCCCEEEeccCC-hhHHHHHHhcCCEEE
Q 010931 41 VALLKAQQIRHVRLYDAD-RGMLVALANTGIKVA 73 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d-~~vL~Ala~tgI~V~ 73 (497)
.++|+.+||++||+..-+ |.-+.+|.+.||+|.
T Consensus 301 aqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 301 AQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 689999999999999999 888899999999986
No 47
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=42.78 E-value=34 Score=36.66 Aligned_cols=38 Identities=37% Similarity=0.445 Sum_probs=34.2
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecCC
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPN 78 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~n 78 (497)
.++|+.+||++||+...+|.=+.+|.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78999999999999999999999999999999855553
No 48
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.55 E-value=2.6e+02 Score=30.30 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccc
Q 010931 123 NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYY 200 (497)
Q Consensus 123 ~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf 200 (497)
.+.+.++.+++.+|++. . ++.+++..-. .|| + +-.+.+...++|+.+.+ +-.+++|+|-
T Consensus 269 ~~~~~~~~~v~~lr~~~----~--~i~i~~d~Iv-----G~P---g----Et~ed~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 269 YRREKYLERIAEIREAL----P--DVVLSTDIIV-----GFP---G----ETEEDFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred CCHHHHHHHHHHHHHhC----C--CcEEEEeEEE-----ECC---C----CCHHHHHHHHHHHHhcC-CCEeeeeEee
Confidence 45677888888887763 2 1444443221 232 1 11245667788877643 4456677654
No 49
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.47 E-value=2.5e+02 Score=30.38 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccccc
Q 010931 123 NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDY 202 (497)
Q Consensus 123 ~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~ 202 (497)
.+......+++.+|+++ .+ +.+++..- -.|| .+-.+.+...++|+.+.. +-.+++++|--.
T Consensus 279 ~~~~~~~~~i~~lr~~~-----~~-i~i~~d~I-----vG~P-------gET~ed~~~tl~~i~~l~-~~~~~~~~~sp~ 339 (439)
T PRK14328 279 YTREYYLELVEKIKSNI-----PD-VAITTDII-----VGFP-------GETEEDFEETLDLVKEVR-YDSAFTFIYSKR 339 (439)
T ss_pred CCHHHHHHHHHHHHHhC-----CC-CEEEEEEE-----EECC-------CCCHHHHHHHHHHHHhcC-CCcccceEecCC
Confidence 45677888888887763 22 44544321 1233 111345667788876643 445677765433
No 50
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=42.13 E-value=34 Score=37.41 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=33.3
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecC
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVP 77 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~ 77 (497)
.++|+.+||++||+..-+|.=+.+|.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6899999999999999999999999999999984444
No 51
>PRK08815 GTP cyclohydrolase; Provisional
Probab=41.89 E-value=36 Score=36.39 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=33.8
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecCC
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPN 78 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~n 78 (497)
.++|+.+|+++||+...+|.=+.+|.+.||+|.==++.
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~ 342 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRV 342 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78999999999999999998899999999999854543
No 52
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.05 E-value=37 Score=36.62 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=33.2
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecC
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVP 77 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~ 77 (497)
.++|+.+|+++||+...+|.=+.+|.+.||+|.=-++
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 7899999999999999999999999999999984444
No 53
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=40.75 E-value=91 Score=30.84 Aligned_cols=81 Identities=14% Similarity=0.074 Sum_probs=46.0
Q ss_pred hHHHHHHhcCCEEEEecCCCccc---ccccchhHHHHHHHHhccccCCCCcEEEEEeccccccCCCCCHHHHHHHHHHHH
Q 010931 60 GMLVALANTGIKVAVSVPNEQLL---GIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIH 136 (497)
Q Consensus 60 ~vL~Ala~tgI~V~lgv~n~~~~---~i~~~~~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk 136 (497)
..+++++..|++|++.|...... .+..+++...+++++ +..+...-.+.+|-+==|-.... ......-++.+|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~~---~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDVT---FGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCcc---HhHHHHHHHHHH
Confidence 45677777899999988754321 233444433444443 33322222344554443433211 356778899999
Q ss_pred HHHHhCCC
Q 010931 137 SALVASNL 144 (497)
Q Consensus 137 ~aL~~~gl 144 (497)
++|++.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99987764
No 54
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=40.37 E-value=38 Score=37.91 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=34.4
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecCC
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPN 78 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~n 78 (497)
.++|+.+||++||+..-+|.=+.+|.+.||+|.=-++.
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 78999999999999999999999999999999855554
No 55
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=40.08 E-value=61 Score=29.10 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecC
Q 010931 39 QVVALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVP 77 (497)
Q Consensus 39 ~vv~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~ 77 (497)
++.++|+..|++.|=+...-+..+++|++.||+|+.+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 679999999999999999999999999999999999877
No 56
>PLN00196 alpha-amylase; Provisional
Probab=37.58 E-value=89 Score=33.94 Aligned_cols=56 Identities=27% Similarity=0.303 Sum_probs=37.4
Q ss_pred eeEEecCCCCCCCC---hHHHHHHHHhCCCCEE-----------------EeccCCh----------hHHHHHHhcCCEE
Q 010931 23 IGANIGTELSDMPH---PTQVVALLKAQQIRHV-----------------RLYDADR----------GMLVALANTGIKV 72 (497)
Q Consensus 23 ~GvnYg~~~~~~p~---~~~vv~llk~~~i~~V-----------------RlY~~d~----------~vL~Ala~tgI~V 72 (497)
=|++|.....+.-. -.+-++.|+++||+.| +.|+.|+ ++++++.+.||+|
T Consensus 29 Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 29 QGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred EeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 37777543222111 2244678999998888 4566652 5788889999999
Q ss_pred EEecCC
Q 010931 73 AVSVPN 78 (497)
Q Consensus 73 ~lgv~n 78 (497)
++.+-.
T Consensus 109 ilDvV~ 114 (428)
T PLN00196 109 IADIVI 114 (428)
T ss_pred EEEECc
Confidence 999653
No 57
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.97 E-value=5.9e+02 Score=27.46 Aligned_cols=195 Identities=12% Similarity=0.155 Sum_probs=91.8
Q ss_pred ecCCCCCCCChHHHH---HHHHhCCCCEEEeccCC-------------hhHHHHHHhc-CC-EEEEecCCCcccccccch
Q 010931 27 IGTELSDMPHPTQVV---ALLKAQQIRHVRLYDAD-------------RGMLVALANT-GI-KVAVSVPNEQLLGIGQSN 88 (497)
Q Consensus 27 Yg~~~~~~p~~~~vv---~llk~~~i~~VRlY~~d-------------~~vL~Ala~t-gI-~V~lgv~n~~~~~i~~~~ 88 (497)
.|++.. -++++++ +.|...|++.|.+.|.| ..+|+++.+. |+ .+-++..+. ..+. .
T Consensus 169 ~g~~rs--r~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p--~~l~--~ 242 (437)
T PRK14331 169 RGKERS--RRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEIDGVERIRFTTGHP--RDLD--E 242 (437)
T ss_pred CCCccc--CCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCCCccEEEEeccCc--ccCC--H
Confidence 455433 3567665 34455788888887533 2456665543 44 333332221 1122 1
Q ss_pred hHHHHHHHHhccccCCCCcEEEEEecccccc-------CCCCCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccc
Q 010931 89 STAANWVSRNIVAHYPATNITTICVGSEVLT-------TLPNAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILD 161 (497)
Q Consensus 89 ~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~-------~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~ 161 (497)
+. .+.+++ . + .....|.+|=|-.. +...+..+...+++.+|+++. | |.|++..-.
T Consensus 243 el-l~~~~~----~-~-~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~--g----i~i~~d~Iv----- 304 (437)
T PRK14331 243 DI-IKAMAD----I-P-QVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIP--D----ITFSTDIIV----- 304 (437)
T ss_pred HH-HHHHHc----C-C-ccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCC--C----CEEecCEEE-----
Confidence 11 112222 1 1 01345555544322 123466788888888887631 2 445443321
Q ss_pred cCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccccccCCCCccCcccccccCCCCCCccccCCCccccchHHHHH
Q 010931 162 SFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAM 241 (497)
Q Consensus 162 ~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~~~Y~n~fda~ 241 (497)
+|| | +-.+.+...++|+.+.. +-.+++|+|--+-+.+ + |. +. . .+.+.....+...+.+-+
T Consensus 305 G~P---g----ET~ed~~~tl~~l~~l~-~~~i~~f~~sp~pGT~----~-~~-~~----~-~~~~~~~~~r~~~l~~~~ 365 (437)
T PRK14331 305 GFP---T----ETEEDFEETLDVLKKVE-FEQVFSFKYSPRPGTP----A-AY-ME----G-QEPDEVKTKRMNRLLELQ 365 (437)
T ss_pred ECC---C----CCHHHHHHHHHHHHhcC-cceeeeeEecCCCCcc----h-hh-CC----C-CCCHHHHHHHHHHHHHHH
Confidence 232 1 11345667888887654 3356777654332222 1 11 11 1 011111223455566655
Q ss_pred HHHHHHHHHHcCCCCccEEEEee
Q 010931 242 VDAAYFAMAFLNFTNIPVMVTES 264 (497)
Q Consensus 242 ~dav~~A~~~~g~~~~~V~VsET 264 (497)
.+-.....+++-...++|+|-|.
T Consensus 366 ~~~~~~~~~~~~g~~~~vlve~~ 388 (437)
T PRK14331 366 KEITFKKALSYEGTVQEVLVEEE 388 (437)
T ss_pred HHHHHHHHHHhCCCEEEEEEEEe
Confidence 55444444444336678888653
No 58
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.92 E-value=4.2e+02 Score=28.51 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=42.2
Q ss_pred EEEEEeccccccC-------CCCCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHh
Q 010931 108 ITTICVGSEVLTT-------LPNAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVP 180 (497)
Q Consensus 108 I~~I~VGNEvl~~-------~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~ 180 (497)
...+.+|=|-..+ ...+......+++.+|+.+ .+ +.|++..-. +|| .+-.+.+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----~~-i~i~~d~Iv-----GfP-------gET~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV-----PD-ASISSDIIV-----GFP-------TETEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----CC-CEEEEEEEE-----ECC-------CCCHHHHHH
Confidence 3466666555432 2235667778888887752 22 556654321 233 122345677
Q ss_pred HHHHhhhcCCcceecccccccc
Q 010931 181 MLNFLQSTGSSLMLNIYPYYDY 202 (497)
Q Consensus 181 ~ldFL~~t~s~~~vNiYPyf~~ 202 (497)
.++|+.+.. +-.+|+++|-.+
T Consensus 312 tl~fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHHHHhcC-CCEEeeeeccCC
Confidence 888887654 345566665444
No 59
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=35.83 E-value=1.2e+02 Score=28.39 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=47.2
Q ss_pred hHHHHHHhc--CCEEEEecCCCcccc---cccchhHHHHHHHHhccccCCCCcEEEEEeccccccCCC-CCHHHHHHHHH
Q 010931 60 GMLVALANT--GIKVAVSVPNEQLLG---IGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLP-NAAPVLVNALK 133 (497)
Q Consensus 60 ~vL~Ala~t--gI~V~lgv~n~~~~~---i~~~~~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~-~~~~~L~~am~ 133 (497)
..++.++.. |++|++.|....... +..+.+...+.+ +++..+...-++.+|-+==|-..... .....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~-~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFA-NSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHH-HHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 456667665 999999998643222 234443333332 23333332224555555333322111 12468999999
Q ss_pred HHHHHHHhCCC
Q 010931 134 FIHSALVASNL 144 (497)
Q Consensus 134 ~vk~aL~~~gl 144 (497)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987653
No 60
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=33.95 E-value=1.4e+02 Score=26.35 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=61.2
Q ss_pred HHHHHhCCCCEEEeccCC----------hhHHHHHHhcCCEEEEecCCCcccccccchhHHHHHHHHhccccCCCCcEEE
Q 010931 41 VALLKAQQIRHVRLYDAD----------RGMLVALANTGIKVAVSVPNEQLLGIGQSNSTAANWVSRNIVAHYPATNITT 110 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d----------~~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~~Wv~~~v~~y~p~~~I~~ 110 (497)
++.|.++|.++|-+-... ....+++++.|++...-.......... .......|+++. .| .+
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p----da 71 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP----DA 71 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS----SE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC----cE
Confidence 466778888888887733 146678889999865543322211111 111222366433 23 38
Q ss_pred EEeccccccCCCCCHHHHHHHHHHHHHHHHhCCC--CCceEEecccccccccccCCCCcccccCCch
Q 010931 111 ICVGSEVLTTLPNAAPVLVNALKFIHSALVASNL--DHQIKVSTPLSSSLILDSFPPSQAFFNRSWN 175 (497)
Q Consensus 111 I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl--~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~ 175 (497)
|+++|+.+. .-+..+|.+.|+ .+++.|-+-+........+ |....++.+..
T Consensus 72 ii~~~~~~a-------------~~~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~-p~it~i~~~~~ 124 (160)
T PF13377_consen 72 IICSNDRLA-------------LGVLRALRELGIRVPQDISVVSFDDSPLLEFFS-PPITTIDQDPR 124 (160)
T ss_dssp EEESSHHHH-------------HHHHHHHHHTTSCTTTTSEEEEESSSGHHHCSS-STSEEEEE-HH
T ss_pred EEEcCHHHH-------------HHHHHHHHHcCCcccccccEEEecCcHHHHHHc-CCCceecCCHH
Confidence 999887542 233456666776 4568888776654443333 44455554443
No 61
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.37 E-value=4.6e+02 Score=28.17 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccccc
Q 010931 123 NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDY 202 (497)
Q Consensus 123 ~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~ 202 (497)
.+.++.+.+++.+|+++. + +.++|.. + -+|| .+-.+.+...++|+.+.. +-.+++|+|-.+
T Consensus 262 ~t~~~~~~~v~~lr~~~p-----~-i~i~~d~----I-vGfP-------gETeedf~~Tl~fl~~l~-~~~~~~f~~sp~ 322 (420)
T PRK14339 262 YTKEWFLNRAEKLRALVP-----E-VSISTDI----I-VGFP-------GESDKDFEDTMDVLEKVR-FEQIFSFKYSPR 322 (420)
T ss_pred CCHHHHHHHHHHHHHHCC-----C-CEEEEEE----E-EECC-------CCCHHHHHHHHHHHHhcC-CCEEeeEecCCC
Confidence 356788888888887632 2 5566532 2 2343 122345677888887543 334677765443
No 62
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.26 E-value=2.7e+02 Score=30.85 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceeccccc
Q 010931 123 NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPY 199 (497)
Q Consensus 123 ~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPy 199 (497)
.+......+++.+|+++ .+ |.|++..-. .|| .+-.+.+...++|+.+.. +-.+++|+|
T Consensus 289 ~t~~~~~~~v~~lr~~~-----~~-i~i~~~~Iv-----GfP-------gET~edf~~Tl~~i~~~~-~~~~~~f~~ 346 (502)
T PRK14326 289 YRSERFLGILEKVRAAM-----PD-AAITTDIIV-----GFP-------GETEEDFQATLDVVREAR-FSSAFTFQY 346 (502)
T ss_pred CCHHHHHHHHHHHHHhC-----CC-CeEEEEEEE-----ECC-------CCCHHHHHHHHHHHHHcC-CCEEEEEee
Confidence 46678888888888752 12 566654221 233 122355677888887643 233455554
No 63
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.81 E-value=7.6e+02 Score=27.51 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceeccccccc
Q 010931 123 NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYD 201 (497)
Q Consensus 123 ~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~ 201 (497)
.+.++.+.+++.+|+++ .+ |.++|..- -+|| .+-.+.+...++|+.+.. +-.+++|+|--
T Consensus 344 ~t~e~~~~~v~~lr~~~-----p~-i~i~tdiI-----vGfP-------gET~edf~~Tl~~v~~l~-~d~~~~f~ysp 403 (509)
T PRK14327 344 YTRESYLELVRKIKEAI-----PN-VALTTDII-----VGFP-------NETDEQFEETLSLYREVG-FDHAYTFIYSP 403 (509)
T ss_pred CCHHHHHHHHHHHHHhC-----CC-cEEeeeEE-----EeCC-------CCCHHHHHHHHHHHHHcC-CCeEEEeeeeC
Confidence 45678888888888863 22 55544321 1233 122345667788877643 23455555443
No 64
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.82 E-value=7e+02 Score=27.33 Aligned_cols=132 Identities=13% Similarity=0.203 Sum_probs=77.6
Q ss_pred ceeEEecCCCCCCCC-hHHHHHHHH---h-CCCCEEEeccCCh-----hHHHHHHhc-CCEEEEecCCCcccccccchhH
Q 010931 22 FIGANIGTELSDMPH-PTQVVALLK---A-QQIRHVRLYDADR-----GMLVALANT-GIKVAVSVPNEQLLGIGQSNST 90 (497)
Q Consensus 22 ~~GvnYg~~~~~~p~-~~~vv~llk---~-~~i~~VRlY~~d~-----~vL~Ala~t-gI~V~lgv~n~~~~~i~~~~~a 90 (497)
.+|.|-+.||.+++. .....+||+ + .|+.+||+=..+| +++++++++ .+.=.+-+|.. +-.+ .
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ---sGsd---~ 268 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ---SGSD---R 268 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc---cCCH---H
Confidence 579999999888863 233334443 3 4678999987764 788888875 55545555532 2111 1
Q ss_pred HHHHHHHhccccCCCCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccc
Q 010931 91 AANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFF 170 (497)
Q Consensus 91 a~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F 170 (497)
|-+.+. | ..+....+.-++.+|+++...-++..|-|+-|-.
T Consensus 269 ----ILk~M~-------------------R-~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgE--------------- 309 (437)
T COG0621 269 ----ILKRMK-------------------R-GYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGE--------------- 309 (437)
T ss_pred ----HHHHhC-------------------C-CcCHHHHHHHHHHHHHhCCCceEeccEEEECCCC---------------
Confidence 112221 1 2356778888888888876555544444554321
Q ss_pred cCCchhhhHhHHHHhhhcCCcceecccccccc
Q 010931 171 NRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDY 202 (497)
Q Consensus 171 ~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~ 202 (497)
-...+...++|+.+. -|=.+|+++|=.-
T Consensus 310 ---TeedFe~tl~lv~e~-~fd~~~~F~YSpR 337 (437)
T COG0621 310 ---TEEDFEETLDLVEEV-RFDRLHVFKYSPR 337 (437)
T ss_pred ---CHHHHHHHHHHHHHh-CCCEEeeeecCCC
Confidence 123455666766543 3677888886443
No 65
>PRK07198 hypothetical protein; Validated
Probab=30.79 E-value=45 Score=35.85 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=34.2
Q ss_pred HHHHHhCCCCEE-EeccCChhHHHHHHhcCCEEEEecCC
Q 010931 41 VALLKAQQIRHV-RLYDADRGMLVALANTGIKVAVSVPN 78 (497)
Q Consensus 41 v~llk~~~i~~V-RlY~~d~~vL~Ala~tgI~V~lgv~n 78 (497)
.++|+.+||++| |+.+.++.=+.+|.+.||+|.==++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 689999999999 99999998999999999999866654
No 66
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.53 E-value=2.2e+02 Score=30.46 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCccccc--CCchhhhHhHHHHhhhcCCcceeccccccc
Q 010931 124 AAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFN--RSWNPVLVPMLNFLQSTGSSLMLNIYPYYD 201 (497)
Q Consensus 124 ~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~--~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~ 201 (497)
+..++...++..|+. +||+..-....-+...+ +.|. ++.-+.+..+++.|.+.+=-+++++.|+..
T Consensus 41 ~~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~ 108 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVS 108 (441)
T ss_dssp SHHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEE
T ss_pred CHHHHHHHHHHHHHc--------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccC
Confidence 355666666666653 37777765444444332 2332 222245778999999999999999999775
Q ss_pred ccCCCCccCcccccccCCCCCCccccCCCccccchHHHHHHHHHHHHHHHcCC----CCccEEEEeecCCCCCCCCCCCC
Q 010931 202 YMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNF----TNIPVMVTESGWPSKGDSNEPDA 277 (497)
Q Consensus 202 ~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~~~Y~n~fda~~dav~~A~~~~g~----~~~~V~VsETGWPS~G~~~~~~A 277 (497)
.... +|..| +. + +..|+ ++-...+++. ||-.+. -..-
T Consensus 109 ~~~~------~~~~~----------------------~~-------~-~~~~~~v~~~~g~~~~~~~-w~g~~~--~~Df 149 (441)
T PF01055_consen 109 NDSP------DYENY----------------------DE-------A-KEKGYLVKNPDGSPYIGRV-WPGKGG--FIDF 149 (441)
T ss_dssp TTTT------B-HHH----------------------HH-------H-HHTT-BEBCTTSSB-EEEE-TTEEEE--EB-T
T ss_pred CCCC------cchhh----------------------hh-------H-hhcCceeecccCCcccccc-cCCccc--ccCC
Confidence 4211 12222 11 1 12222 2235677777 883322 1234
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEEEEe
Q 010931 278 TLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYIYEL 314 (497)
Q Consensus 278 s~~na~~y~~~lv~~~~~~~GTp~rpg~~~~~yiF~l 314 (497)
+-.+++.++++.++.+.+. .+++.++...
T Consensus 150 tnp~a~~w~~~~~~~~~~~--------~Gvdg~w~D~ 178 (441)
T PF01055_consen 150 TNPEARDWWKEQLKELLDD--------YGVDGWWLDF 178 (441)
T ss_dssp TSHHHHHHHHHHHHHHHTT--------ST-SEEEEES
T ss_pred CChhHHHHHHHHHHHHHhc--------cCCceEEeec
Confidence 4456888888888888762 2688887764
No 67
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.43 E-value=1.2e+02 Score=27.48 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=34.7
Q ss_pred hHHHHHHHHhCCCCEEEeccCC-----------------------hhHHHHHHhcCCEEEEecCCC
Q 010931 37 PTQVVALLKAQQIRHVRLYDAD-----------------------RGMLVALANTGIKVAVSVPNE 79 (497)
Q Consensus 37 ~~~vv~llk~~~i~~VRlY~~d-----------------------~~vL~Ala~tgI~V~lgv~n~ 79 (497)
|++.++.||+.+++.|-+|.-+ .++++|+...||+|++-+.-.
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 6788899999999999887631 268899999999999877643
No 68
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=30.36 E-value=1.5e+02 Score=24.45 Aligned_cols=51 Identities=14% Similarity=-0.100 Sum_probs=32.3
Q ss_pred cCCCCcEEEEEeccc-cccC--------CCCCHHHHHHHHHHHHHHHHhCCCCCceEEeccc
Q 010931 102 HYPATNITTICVGSE-VLTT--------LPNAAPVLVNALKFIHSALVASNLDHQIKVSTPL 154 (497)
Q Consensus 102 y~p~~~I~~I~VGNE-vl~~--------~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~ 154 (497)
|.-...|.+-=|+|| .... .....+.+.+.|+.+-+++++.+=. .+||+..
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~--~pvt~g~ 64 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPS--QPVTSGF 64 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TT--S-EE--B
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCC--CcEEeec
Confidence 333578999999999 5521 1123568899999999999988743 6777653
No 69
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.60 E-value=4.5e+02 Score=25.19 Aligned_cols=126 Identities=11% Similarity=0.138 Sum_probs=60.7
Q ss_pred HHHHHHHhCCCCEEEeccCC---------hhHHHHHHhcCCEEEEe--cCCCcccccccchhHHHHHHHHhccccCCCCc
Q 010931 39 QVVALLKAQQIRHVRLYDAD---------RGMLVALANTGIKVAVS--VPNEQLLGIGQSNSTAANWVSRNIVAHYPATN 107 (497)
Q Consensus 39 ~vv~llk~~~i~~VRlY~~d---------~~vL~Ala~tgI~V~lg--v~n~~~~~i~~~~~aa~~Wv~~~v~~y~p~~~ 107 (497)
..++.|.+.|.++|=+.... ....++++..|+++..- .+...........+.+.+|++++ + .
T Consensus 99 ~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~--~ 171 (265)
T cd01543 99 MAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P--K 171 (265)
T ss_pred HHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C--C
Confidence 45677777887777655432 13455677788876211 11111111111223444554432 1 3
Q ss_pred EEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCC--CCceEEecccccccccccCCCCcccccCCchhhhHhHHHH
Q 010931 108 ITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNL--DHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNF 184 (497)
Q Consensus 108 I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl--~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldF 184 (497)
+++|++.|+.+. .. +.++|++.|+ .++|.|..-+....+..-..|.-.....+....-...++.
T Consensus 172 ~~ai~~~~d~~a---------~g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~~ 237 (265)
T cd01543 172 PVGIFACTDARA---------RQ----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAKL 237 (265)
T ss_pred CcEEEecChHHH---------HH----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHHH
Confidence 567888776532 12 3345555665 3457776666544322323343344444433333334443
No 70
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=29.04 E-value=99 Score=30.05 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=36.3
Q ss_pred HHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEecCCCc
Q 010931 41 VALLKAQQIRHVRLYDADRGMLVALANTGIKVAVSVPNEQ 80 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lgv~n~~ 80 (497)
.++|+.+||++||+-..+|.=..++.+.||+|.--+++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 6899999999999999999999999999999998888753
No 71
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=28.22 E-value=77 Score=32.64 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=27.1
Q ss_pred CCccEEEEeecCCCCCCC-CCC-------------------CCCHHHHHHHHHHHHHHHHh
Q 010931 255 TNIPVMVTESGWPSKGDS-NEP-------------------DATLENANTYNSNLIRHVLN 295 (497)
Q Consensus 255 ~~~~V~VsETGWPS~G~~-~~~-------------------~As~~na~~y~~~lv~~~~~ 295 (497)
..|||+++|.|||+.... +++ .-.-.-|++|++.++.+..+
T Consensus 205 ~sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~~ 265 (299)
T PF13547_consen 205 QSKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWDD 265 (299)
T ss_pred CCcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 479999999999985331 211 11233478888887777654
No 72
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.95 E-value=3.8e+02 Score=28.85 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccc
Q 010931 123 NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYY 200 (497)
Q Consensus 123 ~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf 200 (497)
.+..++..+++.+|+++ ++ +.+++..-. +|| | +-.+.+...++|+.+.. +-.+|+++|-
T Consensus 256 ~~~~~~~~~i~~lr~~~-----pg-i~i~~d~Iv-----GfP---G----ET~edf~~tl~fi~~~~-~~~~~v~~ys 314 (418)
T PRK14336 256 YTNQQYRELVERLKTAM-----PD-ISLQTDLIV-----GFP---S----ETEEQFNQSYKLMADIG-YDAIHVAAYS 314 (418)
T ss_pred CCHHHHHHHHHHHHhhC-----CC-CEEEEEEEE-----ECC---C----CCHHHHHHHHHHHHhcC-CCEEEeeecC
Confidence 45678888888888863 22 555544321 233 1 12345667888887753 3345555544
No 73
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=27.36 E-value=75 Score=32.92 Aligned_cols=217 Identities=15% Similarity=0.162 Sum_probs=109.9
Q ss_pred hHHHHHHhcCCEEE--EecCCCcccc-ccc----c-------hhHHHHHHHHhccccCCC-CcEEEEEeccccccCCC--
Q 010931 60 GMLVALANTGIKVA--VSVPNEQLLG-IGQ----S-------NSTAANWVSRNIVAHYPA-TNITTICVGSEVLTTLP-- 122 (497)
Q Consensus 60 ~vL~Ala~tgI~V~--lgv~n~~~~~-i~~----~-------~~aa~~Wv~~~v~~y~p~-~~I~~I~VGNEvl~~~~-- 122 (497)
.+++-+...||+|- .=||-...+. +.. + .+...++|++.+.+| .+ .+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 57777788898876 3355443221 111 1 233456676655555 43 48999999999998653
Q ss_pred -----C------CHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCc
Q 010931 123 -----N------AAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSS 191 (497)
Q Consensus 123 -----~------~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~ 191 (497)
. ...++..+.+-.|++..+ ++.-.-+- +++ ...-.+.+..+++.|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~NDy-~~~-----------~~~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYNDY-NIE-----------SPAKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEES-STT-----------STHHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEeccc-ccc-----------chHHHHHHHHHHHHHHhCCCc
Confidence 1 123566777777777642 33333221 111 010123455677776655432
Q ss_pred ---ceecccccccccCCCCccCcccccccCCCCCCccccCCCccccchHHHHHHHHHHHHHHHcCCCCccEEEEeecCCC
Q 010931 192 ---LMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLVHYSNVFDAMVDAAYFAMAFLNFTNIPVMVTESGWPS 268 (497)
Q Consensus 192 ---~~vNiYPyf~~~~~~~~i~ld~AlF~~~~~~~~~~d~~t~~~Y~n~fda~~dav~~A~~~~g~~~~~V~VsETGWPS 268 (497)
+++-.| .... +. .+.+..+|+++.-.+++|.|||.-=..
T Consensus 204 IdgIG~Q~H----------------------------~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~ 245 (320)
T PF00331_consen 204 IDGIGLQSH----------------------------FDAG----YP------PEQIWNALDRFASLGLPIHITELDVRD 245 (320)
T ss_dssp S-EEEEEEE----------------------------EETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEES
T ss_pred cceechhhc----------------------------cCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecC
Confidence 222222 1111 11 233444455554456999999986443
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCceeEEE-EEeecCC-CCCCCCCCCccccccCCCCceee
Q 010931 269 KGDSNEPDATLENANTYNSNLIRHVLNQTGTPKHPGIGVSTYI-YELYNED-NKPGPLSEKNWGLFDANGDPVYI 341 (497)
Q Consensus 269 ~G~~~~~~As~~na~~y~~~lv~~~~~~~GTp~rpg~~~~~yi-F~lFdE~-~K~g~~~E~~wGlf~~dg~~ky~ 341 (497)
...... ....+.++.+++++++.+.+.. |. .+..+. ..+.|.. |.+... -.+=+||+.|.+||..
T Consensus 246 ~~~~~~-~~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 246 DDNPPD-AEEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp SSTTSC-HHHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred CCCCcc-hHHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 332111 3446678889999999998731 01 233333 3444433 433211 1223688888888753
No 74
>PRK09989 hypothetical protein; Provisional
Probab=27.18 E-value=6e+02 Score=24.84 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=39.7
Q ss_pred eeEEecCCCCCCCChHHHHHHHHhCCCCEEEec---cCC-hhHHHHHHhcCCEEEE
Q 010931 23 IGANIGTELSDMPHPTQVVALLKAQQIRHVRLY---DAD-RGMLVALANTGIKVAV 74 (497)
Q Consensus 23 ~GvnYg~~~~~~p~~~~vv~llk~~~i~~VRlY---~~d-~~vL~Ala~tgI~V~l 74 (497)
..+|.+..-.++ +-.+.++.+++.|++.|-+. +.+ ..+.+.++++||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 567777776665 56788999999999999984 333 4677788999999887
No 75
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=26.99 E-value=7.2e+02 Score=25.72 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=63.3
Q ss_pred HHHHHHHhCCCCEEEeccC-----------C-------hhHHHHHHhcCCEEEEecCC--C------cccc---------
Q 010931 39 QVVALLKAQQIRHVRLYDA-----------D-------RGMLVALANTGIKVAVSVPN--E------QLLG--------- 83 (497)
Q Consensus 39 ~vv~llk~~~i~~VRlY~~-----------d-------~~vL~Ala~tgI~V~lgv~n--~------~~~~--------- 83 (497)
++++.+|+.|+|.|-+|-. | ...|+.+++.|++|+|=.-. . .++.
T Consensus 28 ~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~~ 107 (319)
T PF01301_consen 28 DRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDIR 107 (319)
T ss_dssp HHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS-
T ss_pred HHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcccccc
Confidence 6789999999999999962 1 25788889999999873221 0 0110
Q ss_pred c-ccc---hhHHHHHHHHhc---cccCC--CCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCC
Q 010931 84 I-GQS---NSTAANWVSRNI---VAHYP--ATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDH 146 (497)
Q Consensus 84 i-~~~---~~aa~~Wv~~~v---~~y~p--~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~ 146 (497)
+ ..+ .++...|.+... .++.- .-.|..+=|=||.-.. ..-..+|+.+++..++.+...
T Consensus 108 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~-----~~~~~Y~~~l~~~~~~~g~~~ 174 (319)
T PF01301_consen 108 LRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY-----GTDRAYMEALKDAYRDWGIDP 174 (319)
T ss_dssp SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT-----SS-HHHHHHHHHHHHHTT-SS
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC-----cccHhHHHHHHHHHHHhhCcc
Confidence 1 111 134566766532 33321 3579999999997622 234678888999999988764
No 76
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=26.99 E-value=5.2e+02 Score=26.18 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHhCCCCEEEeccCC-------hhHHHH---HHhcCCEEEEecCCCcccc---cccchhHHHHHHHHhc
Q 010931 33 DMPHPTQVVALLKAQQIRHVRLYDAD-------RGMLVA---LANTGIKVAVSVPNEQLLG---IGQSNSTAANWVSRNI 99 (497)
Q Consensus 33 ~~p~~~~vv~llk~~~i~~VRlY~~d-------~~vL~A---la~tgI~V~lgv~n~~~~~---i~~~~~aa~~Wv~~~v 99 (497)
+.++|.+.++-|+..|+++|-+-... ..+++. +...--++.+|-|.=.... -..+.++ +.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~----va~aL 131 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEA----VAEAL 131 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHH----HHHHH
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHH----HHHHH
Confidence 46899999999999999999999876 234443 3344468999988522101 1112222 33344
Q ss_pred cccCC----CCcEEEEEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCch
Q 010931 100 VAHYP----ATNITTICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWN 175 (497)
Q Consensus 100 ~~y~p----~~~I~~I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~ 175 (497)
..-+| +..+..+-=||+- .+.. +-..++..|++.++.+ +-|+|.+. +| ++
T Consensus 132 ~~~~~~~~~~~a~vlmGHGt~h------~an~---~Y~~l~~~l~~~~~~~-v~vgtvEG-------~P--------~~- 185 (262)
T PF06180_consen 132 AEEFPKKRKDEAVVLMGHGTPH------PANA---AYSALQAMLKKHGYPN-VFVGTVEG-------YP--------SL- 185 (262)
T ss_dssp HCCS-TT-TTEEEEEEE---SC------HHHH---HHHHHHHHHHCCT-TT-EEEEETTS-------SS--------BH-
T ss_pred HHhccccCCCCEEEEEeCCCCC------CccH---HHHHHHHHHHhCCCCe-EEEEEeCC-------CC--------CH-
Confidence 44333 3444455556643 1222 3344567788887765 89999874 32 22
Q ss_pred hhhHhHHHHhhhcCCcceecccccccccCC
Q 010931 176 PVLVPMLNFLQSTGSSLMLNIYPYYDYMQS 205 (497)
Q Consensus 176 ~~i~~~ldFL~~t~s~~~vNiYPyf~~~~~ 205 (497)
..+++.|...+ +=-|.+.||.--.++
T Consensus 186 ---~~vi~~L~~~g-~k~V~L~PlMlVAGd 211 (262)
T PF06180_consen 186 ---EDVIARLKKKG-IKKVHLIPLMLVAGD 211 (262)
T ss_dssp ---HHHHHHHHHHT--SEEEEEEESSS--H
T ss_pred ---HHHHHHHHhcC-CCeEEEEecccccch
Confidence 33444454432 335888998865443
No 77
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=26.88 E-value=1.9e+02 Score=29.42 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=50.0
Q ss_pred hhHHHHHHhcCCEEEEecCCCc--------ccccccchhHHHHHHHHhccccCCCCcEEEEEeccccccCCCCCHHHHHH
Q 010931 59 RGMLVALANTGIKVAVSVPNEQ--------LLGIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVN 130 (497)
Q Consensus 59 ~~vL~Ala~tgI~V~lgv~n~~--------~~~i~~~~~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~ 130 (497)
+.+++++++.|++|++.|.+.. ...+.++++.-.+ +.+++..+...-.+.+|.+==|-+.. ........
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~-fi~~iv~~l~~~~~DGidiDwE~~~~--~d~~~~~~ 124 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQR-LINNILALAKKYGYDGVNIDFENVPP--EDREAYTQ 124 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCCcEEEecccCCH--HHHHHHHH
Confidence 5788888889999999987642 1233344332222 23334333222245566654454421 23456889
Q ss_pred HHHHHHHHHHhCCC
Q 010931 131 ALKFIHSALVASNL 144 (497)
Q Consensus 131 am~~vk~aL~~~gl 144 (497)
-|+.+|.+|++.|+
T Consensus 125 fl~~lr~~l~~~~~ 138 (313)
T cd02874 125 FLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHhhhcCc
Confidence 99999999987764
No 78
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=26.83 E-value=1.7e+02 Score=29.83 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=43.0
Q ss_pred HHHHHhc--CCEEEEecCCC----cccccccchhHHHHHHHHhccccCCCCcEEEEEeccccccCCCCCHHHHHHHHHHH
Q 010931 62 LVALANT--GIKVAVSVPNE----QLLGIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTTLPNAAPVLVNALKFI 135 (497)
Q Consensus 62 L~Ala~t--gI~V~lgv~n~----~~~~i~~~~~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~~~~~~~~L~~am~~v 135 (497)
|.+++.. +++|++.|-.. ....+..+.+.-.++++ +|..+...-.+.+|-+==|-..........++.-|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 5556554 89999988652 22334444332233332 33333222246666664343322112345788889999
Q ss_pred HHHHHhC
Q 010931 136 HSALVAS 142 (497)
Q Consensus 136 k~aL~~~ 142 (497)
|+.|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999764
No 79
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=26.00 E-value=8e+02 Score=26.44 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccccc
Q 010931 123 NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDY 202 (497)
Q Consensus 123 ~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~ 202 (497)
.+..+++.+++.+|++. .+ +.+++..-. .|| | +-.+.+...++|+.+.. +=.+++++|-..
T Consensus 279 ~t~~~~~~~v~~ir~~~-----~~-i~i~~d~Iv-----G~P---g----Et~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 339 (438)
T TIGR01574 279 YTREWYLNLVRKLRAAC-----PN-VSISTDIIV-----GFP---G----ETEEDFEETLDLLREVE-FDSAFSFIYSPR 339 (438)
T ss_pred CCHHHHHHHHHHHHHhC-----CC-CeEeeCEEE-----eCC---C----CCHHHHHHHHHHHHhcC-CCeeeeEEecCC
Confidence 45677888888887762 22 555543321 232 1 11245667888888764 335677766443
No 80
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=25.72 E-value=3.6e+02 Score=29.69 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCCEEEe-------cc------CC-------hhHHHHHHhcCCEEEEecCCCccc
Q 010931 39 QVVALLKAQQIRHVRL-------YD------AD-------RGMLVALANTGIKVAVSVPNEQLL 82 (497)
Q Consensus 39 ~vv~llk~~~i~~VRl-------Y~------~d-------~~vL~Ala~tgI~V~lgv~n~~~~ 82 (497)
++++|||++|++.-|+ += .| ..++..|.+.||+-+|.+.--+++
T Consensus 71 eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 71 EDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 8999999999877764 31 13 269999999999999999865544
No 81
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=25.37 E-value=6.4e+02 Score=27.44 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=42.0
Q ss_pred HHHHhC-CCCEEEeccC---------ChhHHHHHHhcCCEEEEecCCCcccccccchhHHHHHHHHhccccCCCCcEEEE
Q 010931 42 ALLKAQ-QIRHVRLYDA---------DRGMLVALANTGIKVAVSVPNEQLLGIGQSNSTAANWVSRNIVAHYPATNITTI 111 (497)
Q Consensus 42 ~llk~~-~i~~VRlY~~---------d~~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~~Wv~~~v~~y~p~~~I~~I 111 (497)
+.|++. ++..||+..- ++++++.|++++. +++++..+....+..+..+| +++. .. .+|
T Consensus 179 ~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~-~~v~~h~nhp~Eit~~a~~A---l~~L-~~-------aGI 246 (417)
T TIGR03820 179 TELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHP-VWLNTHFNHPREITASSKKA---LAKL-AD-------AGI 246 (417)
T ss_pred HHHhhcCCCceEEEeeccccccccccCHHHHHHHHhcCC-eEEEEeCCChHhChHHHHHH---HHHH-HH-------cCC
Confidence 333443 5666777652 2466677777762 44444433323333211111 2221 11 156
Q ss_pred Eeccc-cccCCCCCHHHHHHHHHHHHHHHHhCCC
Q 010931 112 CVGSE-VLTTLPNAAPVLVNALKFIHSALVASNL 144 (497)
Q Consensus 112 ~VGNE-vl~~~~~~~~~L~~am~~vk~aL~~~gl 144 (497)
.+||. ||.++-|.-+.+ |+++-..|.+.|.
T Consensus 247 ~l~nQsVLLkGVND~~~~---l~~L~~~L~~~gV 277 (417)
T TIGR03820 247 PLGNQSVLLAGVNDCPRI---MKKLVHKLVANRV 277 (417)
T ss_pred EEEeeceEECCcCCCHHH---HHHHHHHHHHCCC
Confidence 67775 445654443333 4555566666664
No 82
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=25.06 E-value=2.8e+02 Score=30.49 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCEEEe-------ccC-----C-------hhHHHHHHhcCCEEEEecCCCccc
Q 010931 38 TQVVALLKAQQIRHVRL-------YDA-----D-------RGMLVALANTGIKVAVSVPNEQLL 82 (497)
Q Consensus 38 ~~vv~llk~~~i~~VRl-------Y~~-----d-------~~vL~Ala~tgI~V~lgv~n~~~~ 82 (497)
+++++||+++|++.-|+ +=- | .+++.+|.+.||+-+|.+.--+++
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 38999999999877764 321 2 269999999999999999865544
No 83
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=24.63 E-value=8.9e+02 Score=25.95 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceecccccccc
Q 010931 123 NAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDY 202 (497)
Q Consensus 123 ~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~ 202 (497)
.+...++.+++.+|++.. .+.|++.. + -.|| .+-.+.+...++|+.+.. +-.+++++|--+
T Consensus 267 ~~~~~~~~~i~~l~~~~~------~i~i~~~~----I-~G~P-------gET~e~~~~t~~fl~~~~-~~~~~~~~~sp~ 327 (430)
T TIGR01125 267 GSGEQQLDFIERLREKCP------DAVLRTTF----I-VGFP-------GETEEDFQELLDFVEEGQ-FDRLGAFTYSPE 327 (430)
T ss_pred CCHHHHHHHHHHHHHhCC------CCeEeEEE----E-EECC-------CCCHHHHHHHHHHHHhcC-CCEEeeeeccCC
Confidence 456778888888887631 14444432 1 1222 112356778899987654 556677776654
Q ss_pred c
Q 010931 203 M 203 (497)
Q Consensus 203 ~ 203 (497)
-
T Consensus 328 p 328 (430)
T TIGR01125 328 E 328 (430)
T ss_pred C
Confidence 3
No 84
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=24.50 E-value=4.2e+02 Score=25.64 Aligned_cols=97 Identities=12% Similarity=0.232 Sum_probs=57.8
Q ss_pred ChHHHHHHHHhCCCCEEEec-cC-C--hhHHHHHHhcCCEEEEecCCCcccccccchhHHHHHHHHhccccCCC-CcEEE
Q 010931 36 HPTQVVALLKAQQIRHVRLY-DA-D--RGMLVALANTGIKVAVSVPNEQLLGIGQSNSTAANWVSRNIVAHYPA-TNITT 110 (497)
Q Consensus 36 ~~~~vv~llk~~~i~~VRlY-~~-d--~~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~~Wv~~~v~~y~p~-~~I~~ 110 (497)
.|.+.++.++..|.+.|=+- .+ + ..+++.+++.|+++-+.++... .+ + .+.+|.+. +.|.-
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~----~--------~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV----E--------ELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G----G--------GGTTTGCCSSEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc----h--------HHHHHhhhcCEEEE
Confidence 35677777777777766332 11 1 3688889999999988876432 11 1 24445543 33433
Q ss_pred EEeccccccCCCCCHHHHHHHHHHHHHHHHhCCCCCce
Q 010931 111 ICVGSEVLTTLPNAAPVLVNALKFIHSALVASNLDHQI 148 (497)
Q Consensus 111 I~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~~~I 148 (497)
.+| |+=+.+..--+..+..|+.+|+.+.+.|++-.|
T Consensus 134 MsV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I 169 (201)
T PF00834_consen 134 MSV--EPGFGGQKFIPEVLEKIRELRKLIPENGLDFEI 169 (201)
T ss_dssp ESS---TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEE
T ss_pred EEe--cCCCCcccccHHHHHHHHHHHHHHHhcCCceEE
Confidence 333 332333344568999999999999998875333
No 85
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.37 E-value=91 Score=33.87 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC
Q 010931 125 APVLVNALKFIHSALVASNLDH 146 (497)
Q Consensus 125 ~~~L~~am~~vk~aL~~~gl~~ 146 (497)
....+.-++.+.+.|.++|+..
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~~ 283 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYVP 283 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEE
Confidence 4466777778899999999853
No 86
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=23.23 E-value=9.7e+02 Score=25.89 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=56.7
Q ss_pred HHHHHhCCCCEEEeccCC-----hhHHHHHHhcCCEEEEecCCCcccccccchhHHHHHHHHhccccCCCCcEEEEEecc
Q 010931 41 VALLKAQQIRHVRLYDAD-----RGMLVALANTGIKVAVSVPNEQLLGIGQSNSTAANWVSRNIVAHYPATNITTICVGS 115 (497)
Q Consensus 41 v~llk~~~i~~VRlY~~d-----~~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~~Wv~~~v~~y~p~~~I~~I~VGN 115 (497)
++.|+..++ .+|+-... .++|+++++.++...+.++.+ +..+ + +-+.+.
T Consensus 222 l~~l~~~~~-~~r~~~~~p~~~~dell~~m~~g~~~~~l~IglE---Sgs~--~-----vLk~m~--------------- 275 (440)
T PRK14862 222 CEALGELGA-WVRLHYVYPYPHVDEVIPLMAEGKILPYLDIPFQ---HASP--R-----VLKRMK--------------- 275 (440)
T ss_pred HHHHHhcCC-EEEEecCCCCcCCHHHHHHHhcCCCccccccccc---cCCH--H-----HHHhcC---------------
Confidence 444455676 67864332 479999988444335555543 2221 1 111111
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceec
Q 010931 116 EVLTTLPNAAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLN 195 (497)
Q Consensus 116 Evl~~~~~~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vN 195 (497)
...+....+.+++.+|++... |.|+|.. +. .|| .+-.+.+...++|+.+.+ +-.+|
T Consensus 276 -----r~~~~~~~~~~i~~lr~~~~~------i~i~t~~----Iv-GfP-------gET~edf~~tl~fi~e~~-~d~~~ 331 (440)
T PRK14862 276 -----RPASVEKTLERIKKWREICPD------LTIRSTF----IV-GFP-------GETEEDFQMLLDFLKEAQ-LDRVG 331 (440)
T ss_pred -----CCCCHHHHHHHHHHHHHHCCC------ceecccE----EE-ECC-------CCCHHHHHHHHHHHHHcC-CCeee
Confidence 123456778888888886422 4454421 11 222 122356778889887753 23344
Q ss_pred ccccc
Q 010931 196 IYPYY 200 (497)
Q Consensus 196 iYPyf 200 (497)
+++|-
T Consensus 332 ~f~ys 336 (440)
T PRK14862 332 CFKYS 336 (440)
T ss_pred eEeec
Confidence 55433
No 87
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=22.09 E-value=5.6e+02 Score=25.45 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=54.2
Q ss_pred hHHHHHHHHhCCCCEEEec-cCC---hhHHHHHHhcCCEEEEecCCCcccccccchhHHHHHHHHhccccCCC-CcEEEE
Q 010931 37 PTQVVALLKAQQIRHVRLY-DAD---RGMLVALANTGIKVAVSVPNEQLLGIGQSNSTAANWVSRNIVAHYPA-TNITTI 111 (497)
Q Consensus 37 ~~~vv~llk~~~i~~VRlY-~~d---~~vL~Ala~tgI~V~lgv~n~~~~~i~~~~~aa~~Wv~~~v~~y~p~-~~I~~I 111 (497)
|.+-++.+.+.|.+.|-+- .+. ..+|+.+++.|+.|-+|+-...-.. .+. +.+|.+. +.|.-.
T Consensus 80 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp----~~~--------i~~~l~~vD~VLiM 147 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETP----ISL--------LEPYLDQIDLIQIL 147 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCC----HHH--------HHHHHhhcCEEEEE
Confidence 5566777777777766443 222 2577777888884445554321111 111 2233332 344444
Q ss_pred EeccccccCCCCCHHHHHHHHHHHHHHHHhCCCC
Q 010931 112 CVGSEVLTTLPNAAPVLVNALKFIHSALVASNLD 145 (497)
Q Consensus 112 ~VGNEvl~~~~~~~~~L~~am~~vk~aL~~~gl~ 145 (497)
+| |+=+.+..--+..+..|+.+|+.+++.|++
T Consensus 148 tV--~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 148 TL--DPRTGTKAPSDLILDRVIQVENRLGNRRVE 179 (228)
T ss_pred EE--CCCCCCccccHHHHHHHHHHHHHHHhcCCC
Confidence 44 333334444567889999999999988875
No 88
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=21.96 E-value=1.7e+02 Score=25.49 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCEEEecc--CC---hhHHHHHHhcCCEEEE
Q 010931 39 QVVALLKAQQIRHVRLYD--AD---RGMLVALANTGIKVAV 74 (497)
Q Consensus 39 ~vv~llk~~~i~~VRlY~--~d---~~vL~Ala~tgI~V~l 74 (497)
++.+.++++|++.|+++= .. ..+|++|+..||+|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 51 DAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 556778889999999985 32 4799999999998654
No 89
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.53 E-value=7.8e+02 Score=26.63 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCCCcccccCCchhhhHhHHHHhhhcCCcceeccccccccc
Q 010931 124 AAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPPSQAFFNRSWNPVLVPMLNFLQSTGSSLMLNIYPYYDYM 203 (497)
Q Consensus 124 ~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pPS~~~F~~~~~~~i~~~ldFL~~t~s~~~vNiYPyf~~~ 203 (497)
+..+...+++.+|+++. + +.|++..-. +|| .+-.+.+...++|+.+.. +=.+++++|--.-
T Consensus 288 t~e~~~~~i~~lr~~~p-----~-i~i~~d~Iv-----GfP-------gET~edf~~tl~~l~~~~-~~~~~~~~~sp~p 348 (448)
T PRK14333 288 THEKYRRIIDKIREYMP-----D-ASISADAIV-----GFP-------GETEAQFENTLKLVEEIG-FDQLNTAAYSPRP 348 (448)
T ss_pred CHHHHHHHHHHHHHhCC-----C-cEEEeeEEE-----ECC-------CCCHHHHHHHHHHHHHcC-CCEEeeeeeecCC
Confidence 56677888888887631 2 455543221 232 111345667888887654 3456777765443
No 90
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=21.15 E-value=1.9e+02 Score=30.09 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=39.5
Q ss_pred cCCEEEEecCC--C---cccccccchhHHHHHHHHhccccCCCCcEEEEEeccccccC---CCCCHHHHHHHHHHHHHHH
Q 010931 68 TGIKVAVSVPN--E---QLLGIGQSNSTAANWVSRNIVAHYPATNITTICVGSEVLTT---LPNAAPVLVNALKFIHSAL 139 (497)
Q Consensus 68 tgI~V~lgv~n--~---~~~~i~~~~~aa~~Wv~~~v~~y~p~~~I~~I~VGNEvl~~---~~~~~~~L~~am~~vk~aL 139 (497)
.++||++.|-. . ....+..+++.-.+.++. +..+...-.+.+|.+==|-... .+.....++..|+.+|++|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l 147 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAF 147 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 57999988742 2 123344444433333333 3333222234455443332211 1123457889999999999
Q ss_pred HhCC
Q 010931 140 VASN 143 (497)
Q Consensus 140 ~~~g 143 (497)
++.+
T Consensus 148 ~~~~ 151 (362)
T cd02872 148 EPEA 151 (362)
T ss_pred HhhC
Confidence 9873
No 91
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.13 E-value=5.6e+02 Score=26.33 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCceEEecccccccccccCCC--Cccccc--CCchhhhHhHHHHhhhcCCcceeccccc
Q 010931 124 AAPVLVNALKFIHSALVASNLDHQIKVSTPLSSSLILDSFPP--SQAFFN--RSWNPVLVPMLNFLQSTGSSLMLNIYPY 199 (497)
Q Consensus 124 ~~~~L~~am~~vk~aL~~~gl~~~IkVst~~s~~~l~~~~pP--S~~~F~--~~~~~~i~~~ldFL~~t~s~~~vNiYPy 199 (497)
+..++...++++++. + ||+..-.-..-|.....+ ..+.|. ++--|..+.+++-|.+.+=-+++++.|+
T Consensus 22 ~~~~v~~~~~~~~~~----~----iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK----D----FPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh----C----CCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 456677777776653 3 666654433223221110 112332 2222456778888888888899999998
Q ss_pred cc
Q 010931 200 YD 201 (497)
Q Consensus 200 f~ 201 (497)
..
T Consensus 94 v~ 95 (317)
T cd06598 94 VL 95 (317)
T ss_pred cc
Confidence 74
No 92
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=20.46 E-value=2e+02 Score=23.36 Aligned_cols=21 Identities=38% Similarity=0.287 Sum_probs=16.4
Q ss_pred ChHHHHHHHHhCCCCEEEeccC
Q 010931 36 HPTQVVALLKAQQIRHVRLYDA 57 (497)
Q Consensus 36 ~~~~vv~llk~~~i~~VRlY~~ 57 (497)
+.+++.+.+++.|. .||=...
T Consensus 30 ~~~~~~~~l~~~G~-~v~~ve~ 50 (83)
T PF13670_consen 30 SIEQAVAKLEAQGY-QVREVEF 50 (83)
T ss_pred CHHHHHHHHHhcCC-ceEEEEE
Confidence 67788999999997 6666655
No 93
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.31 E-value=1.3e+02 Score=26.37 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=19.0
Q ss_pred ChHHHHHHHHhCCC---CEEEeccCChh
Q 010931 36 HPTQVVALLKAQQI---RHVRLYDADRG 60 (497)
Q Consensus 36 ~~~~vv~llk~~~i---~~VRlY~~d~~ 60 (497)
.|+++-++|+.+.. .++||||.|-.
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~ 29 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGN 29 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCC
Confidence 36778888887643 89999998843
No 94
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=20.05 E-value=2e+02 Score=23.20 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=34.8
Q ss_pred hHHHHHHHHhCCCCEEEeccCChhHHHHHHhcCCEEEEe
Q 010931 37 PTQVVALLKAQQIRHVRLYDADRGMLVALANTGIKVAVS 75 (497)
Q Consensus 37 ~~~vv~llk~~~i~~VRlY~~d~~vL~Ala~tgI~V~lg 75 (497)
+.+..++|...+++.|=.-..-+...+.|...||+|+.+
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc
Confidence 447788888899999988888899999999999999998
Done!