Query 010933
Match_columns 497
No_of_seqs 472 out of 2417
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 06:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.3E-52 2.8E-57 358.4 28.6 323 27-496 110-479 (480)
2 KOG1354 Serine/threonine prote 100.0 7.6E-50 1.7E-54 337.1 22.3 426 9-497 7-433 (433)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-46 5.2E-51 324.1 20.6 288 24-457 167-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 3E-45 6.4E-50 313.3 23.9 284 29-456 154-478 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-42 5.1E-47 299.4 22.9 277 109-497 175-459 (459)
6 KOG0318 WD40 repeat stress pro 100.0 1.2E-39 2.7E-44 290.0 36.7 374 10-497 176-559 (603)
7 COG5170 CDC55 Serine/threonine 100.0 7.4E-41 1.6E-45 279.4 18.2 438 11-497 5-459 (460)
8 KOG0286 G-protein beta subunit 100.0 2.4E-38 5.1E-43 262.0 30.5 286 30-456 53-342 (343)
9 KOG0319 WD40-repeat-containing 100.0 2.7E-38 5.8E-43 292.4 30.8 393 29-495 102-616 (775)
10 KOG0279 G protein beta subunit 100.0 1.7E-37 3.7E-42 255.4 30.3 296 28-496 11-311 (315)
11 KOG0315 G-protein beta subunit 100.0 5.1E-37 1.1E-41 248.4 27.9 289 45-478 11-309 (311)
12 KOG0286 G-protein beta subunit 100.0 1.2E-36 2.7E-41 251.8 27.5 288 87-496 45-343 (343)
13 KOG0263 Transcription initiati 100.0 1.8E-37 3.8E-42 289.9 25.1 264 32-412 378-651 (707)
14 KOG0279 G protein beta subunit 100.0 6.9E-37 1.5E-41 251.8 24.7 245 30-410 61-313 (315)
15 KOG0315 G-protein beta subunit 100.0 1.8E-36 3.9E-41 245.3 26.4 270 29-431 36-308 (311)
16 KOG0265 U5 snRNP-specific prot 100.0 2.1E-36 4.5E-41 251.5 26.7 283 30-494 45-334 (338)
17 KOG0293 WD40 repeat-containing 100.0 5.8E-37 1.2E-41 265.1 23.8 287 30-459 222-513 (519)
18 KOG0291 WD40-repeat-containing 100.0 3.8E-35 8.3E-40 272.0 37.4 379 29-497 142-549 (893)
19 KOG0273 Beta-transducin family 100.0 1.7E-35 3.6E-40 260.3 30.1 329 29-494 175-519 (524)
20 KOG0318 WD40 repeat stress pro 100.0 2E-34 4.2E-39 256.9 36.7 367 30-496 57-515 (603)
21 KOG0273 Beta-transducin family 100.0 1.1E-35 2.4E-40 261.5 28.3 280 31-410 234-523 (524)
22 KOG0284 Polyadenylation factor 100.0 5.1E-37 1.1E-41 265.1 19.6 278 32-456 96-377 (464)
23 KOG0316 Conserved WD40 repeat- 100.0 5.9E-36 1.3E-40 240.3 24.1 281 30-497 15-298 (307)
24 KOG0285 Pleiotropic regulator 100.0 7.9E-36 1.7E-40 253.6 25.5 253 12-413 139-392 (460)
25 KOG0284 Polyadenylation factor 100.0 4.2E-37 9.2E-42 265.6 17.9 275 109-496 96-378 (464)
26 KOG0295 WD40 repeat-containing 100.0 8.2E-36 1.8E-40 254.1 25.3 281 29-456 105-403 (406)
27 KOG0291 WD40-repeat-containing 100.0 5.9E-34 1.3E-38 264.2 36.6 373 31-496 95-506 (893)
28 KOG0306 WD40-repeat-containing 100.0 6.1E-35 1.3E-39 270.5 29.8 263 189-496 393-662 (888)
29 KOG0319 WD40-repeat-containing 100.0 3.2E-34 6.8E-39 265.5 30.5 374 30-496 60-575 (775)
30 KOG0276 Vesicle coat complex C 100.0 2.9E-34 6.3E-39 260.8 28.2 266 30-434 11-280 (794)
31 KOG0266 WD40 repeat-containing 100.0 6.9E-34 1.5E-38 273.4 30.7 288 31-456 158-451 (456)
32 KOG0645 WD40 repeat protein [G 100.0 4.3E-33 9.2E-38 228.6 29.9 285 90-496 7-309 (312)
33 KOG0645 WD40 repeat protein [G 100.0 3.8E-33 8.2E-38 228.9 28.1 287 29-456 11-308 (312)
34 KOG0296 Angio-associated migra 100.0 7.1E-33 1.5E-37 236.4 29.6 329 30-496 62-396 (399)
35 KOG0282 mRNA splicing factor [ 100.0 3.1E-34 6.7E-39 253.4 18.1 284 30-456 212-502 (503)
36 cd00200 WD40 WD40 domain, foun 100.0 8E-32 1.7E-36 247.1 34.9 279 30-456 7-288 (289)
37 KOG0313 Microtubule binding pr 100.0 5.6E-33 1.2E-37 238.2 24.8 303 16-456 89-415 (423)
38 PLN00181 protein SPA1-RELATED; 100.0 2.7E-31 5.7E-36 274.8 40.1 304 26-496 477-791 (793)
39 KOG0263 Transcription initiati 100.0 3.4E-33 7.3E-38 261.3 22.6 265 110-456 379-646 (707)
40 KOG0283 WD40 repeat-containing 100.0 1.1E-32 2.5E-37 260.0 25.3 272 30-411 265-577 (712)
41 KOG0292 Vesicle coat complex C 100.0 5.4E-32 1.2E-36 255.2 29.5 296 31-456 8-318 (1202)
42 KOG0306 WD40-repeat-containing 100.0 1.8E-31 3.8E-36 247.7 32.3 363 32-496 65-578 (888)
43 KOG0281 Beta-TrCP (transducin 100.0 1.4E-33 3E-38 239.1 15.8 234 31-413 196-431 (499)
44 KOG0278 Serine/threonine kinas 100.0 1.6E-33 3.5E-38 228.3 15.5 278 30-456 12-294 (334)
45 KOG0275 Conserved WD40 repeat- 100.0 5.8E-33 1.3E-37 233.3 19.1 293 30-457 211-507 (508)
46 KOG0295 WD40 repeat-containing 100.0 1.7E-32 3.8E-37 233.9 22.1 288 85-496 96-404 (406)
47 KOG0772 Uncharacterized conser 100.0 3.1E-32 6.8E-37 242.3 23.0 275 30-415 165-450 (641)
48 KOG0266 WD40 repeat-containing 100.0 3.1E-31 6.6E-36 255.1 30.8 281 110-496 160-452 (456)
49 KOG0282 mRNA splicing factor [ 100.0 7.6E-33 1.7E-37 244.6 17.7 285 88-496 205-503 (503)
50 cd00200 WD40 WD40 domain, foun 100.0 2.4E-30 5.1E-35 237.3 32.6 281 91-496 3-289 (289)
51 KOG1446 Histone H3 (Lys4) meth 100.0 3.8E-30 8.2E-35 216.5 30.2 268 31-433 13-285 (311)
52 KOG0293 WD40 repeat-containing 100.0 2.2E-31 4.8E-36 230.6 21.4 287 89-496 216-511 (519)
53 KOG1407 WD40 repeat protein [F 100.0 1.4E-30 3.1E-35 212.7 24.5 276 28-490 16-293 (313)
54 KOG0643 Translation initiation 100.0 1.8E-30 4E-35 212.7 24.1 295 25-412 3-319 (327)
55 KOG0296 Angio-associated migra 100.0 1.9E-30 4.2E-35 221.6 25.1 301 12-456 89-395 (399)
56 KOG0640 mRNA cleavage stimulat 100.0 9.5E-31 2.1E-35 218.8 22.5 310 29-456 109-423 (430)
57 PTZ00421 coronin; Provisional 100.0 4.4E-29 9.6E-34 238.8 32.9 300 15-434 5-314 (493)
58 KOG0973 Histone transcription 100.0 1.4E-29 3E-34 245.4 27.8 314 32-496 13-353 (942)
59 KOG0643 Translation initiation 100.0 7.3E-29 1.6E-33 203.3 25.2 285 92-494 5-313 (327)
60 KOG0310 Conserved WD40 repeat- 100.0 9.8E-29 2.1E-33 219.1 28.1 262 31-433 25-289 (487)
61 KOG0265 U5 snRNP-specific prot 100.0 2.3E-29 4.9E-34 209.7 22.5 265 11-409 71-337 (338)
62 KOG0277 Peroxisomal targeting 100.0 5.2E-30 1.1E-34 208.5 18.1 243 32-409 60-308 (311)
63 KOG0277 Peroxisomal targeting 100.0 9.9E-30 2.2E-34 206.9 19.6 282 36-457 12-307 (311)
64 KOG0313 Microtubule binding pr 100.0 1.8E-29 3.9E-34 216.7 21.6 299 103-496 99-416 (423)
65 KOG0276 Vesicle coat complex C 100.0 3.7E-29 8E-34 227.8 24.7 275 110-496 14-296 (794)
66 KOG0285 Pleiotropic regulator 100.0 9.3E-30 2E-34 216.8 19.3 290 80-496 134-437 (460)
67 KOG0288 WD40 repeat protein Ti 100.0 4.7E-30 1E-34 222.6 17.1 283 30-495 173-458 (459)
68 KOG0647 mRNA export protein (c 100.0 7.1E-28 1.5E-32 201.0 26.3 275 31-439 26-307 (347)
69 KOG0283 WD40 repeat-containing 100.0 2E-28 4.4E-33 231.4 25.8 300 109-456 267-573 (712)
70 KOG0268 Sof1-like rRNA process 100.0 9.2E-30 2E-34 217.2 15.1 292 14-456 48-342 (433)
71 KOG1063 RNA polymerase II elon 100.0 9.3E-28 2E-32 221.3 28.8 416 27-496 186-697 (764)
72 KOG0305 Anaphase promoting com 100.0 1.4E-28 3E-33 226.7 23.5 240 32-412 217-463 (484)
73 KOG0292 Vesicle coat complex C 100.0 5.1E-28 1.1E-32 228.6 24.3 276 110-496 10-319 (1202)
74 KOG0281 Beta-TrCP (transducin 100.0 2.3E-29 4.9E-34 213.7 13.2 263 110-496 198-475 (499)
75 KOG1446 Histone H3 (Lys4) meth 100.0 1.6E-26 3.6E-31 194.6 29.8 274 110-495 15-300 (311)
76 KOG0316 Conserved WD40 repeat- 100.0 1E-27 2.2E-32 193.1 21.1 242 90-456 10-254 (307)
77 KOG1539 WD repeat protein [Gen 100.0 8.3E-27 1.8E-31 219.4 30.5 375 31-496 201-646 (910)
78 KOG0299 U3 snoRNP-associated p 100.0 4E-27 8.7E-32 207.3 25.4 269 30-412 140-412 (479)
79 PLN00181 protein SPA1-RELATED; 100.0 1E-26 2.2E-31 240.8 32.8 258 30-409 530-792 (793)
80 KOG0641 WD40 repeat protein [G 100.0 8.7E-26 1.9E-30 180.9 30.3 307 29-456 29-346 (350)
81 KOG2106 Uncharacterized conser 100.0 4.8E-26 1E-30 202.6 30.7 378 27-495 99-518 (626)
82 KOG0289 mRNA splicing factor [ 100.0 1.9E-26 4E-31 201.6 27.1 244 32-412 219-464 (506)
83 PTZ00420 coronin; Provisional 100.0 4.5E-26 9.7E-31 219.0 32.6 255 50-434 50-317 (568)
84 KOG0300 WD40 repeat-containing 100.0 6.3E-27 1.4E-31 196.6 22.7 322 28-456 144-473 (481)
85 KOG0308 Conserved WD40 repeat- 100.0 2.2E-27 4.7E-32 217.4 20.0 278 30-432 19-306 (735)
86 KOG0640 mRNA cleavage stimulat 100.0 7E-27 1.5E-31 195.7 20.8 293 110-496 113-424 (430)
87 KOG0305 Anaphase promoting com 100.0 2.3E-26 5E-31 212.0 26.1 269 36-456 181-458 (484)
88 KOG1036 Mitotic spindle checkp 100.0 1.4E-25 3.1E-30 188.0 27.6 249 32-415 13-267 (323)
89 KOG0274 Cdc4 and related F-box 100.0 2.7E-26 5.9E-31 219.9 26.3 268 31-456 207-479 (537)
90 KOG2096 WD40 repeat protein [G 100.0 8.7E-26 1.9E-30 189.9 25.9 294 90-495 79-399 (420)
91 KOG0278 Serine/threonine kinas 100.0 2E-27 4.3E-32 193.1 14.4 243 29-414 56-301 (334)
92 PTZ00421 coronin; Provisional 100.0 1.3E-25 2.8E-30 215.1 29.1 219 28-362 71-299 (493)
93 KOG1408 WD40 repeat protein [F 100.0 7.3E-26 1.6E-30 209.4 25.9 361 36-496 328-711 (1080)
94 KOG0647 mRNA export protein (c 100.0 7.9E-26 1.7E-30 188.9 23.6 268 110-488 28-312 (347)
95 KOG0275 Conserved WD40 repeat- 100.0 4E-27 8.6E-32 198.3 15.8 244 30-408 261-507 (508)
96 KOG0294 WD40 repeat-containing 99.9 8.6E-26 1.9E-30 189.7 23.5 240 30-413 41-284 (362)
97 PTZ00420 coronin; Provisional 99.9 4.9E-25 1.1E-29 211.9 32.1 254 189-482 53-319 (568)
98 KOG2048 WD40 repeat protein [G 99.9 1.3E-24 2.9E-29 200.3 33.1 326 32-496 25-409 (691)
99 KOG1063 RNA polymerase II elon 99.9 2.2E-25 4.7E-30 205.8 27.6 406 30-496 52-646 (764)
100 KOG0264 Nucleosome remodeling 99.9 3.2E-26 6.8E-31 201.7 21.1 265 29-411 121-405 (422)
101 KOG2106 Uncharacterized conser 99.9 1.1E-24 2.4E-29 194.0 30.0 352 32-496 246-624 (626)
102 KOG0264 Nucleosome remodeling 99.9 3.2E-26 7E-31 201.7 19.9 286 95-496 110-402 (422)
103 KOG0294 WD40 repeat-containing 99.9 6.3E-25 1.4E-29 184.5 26.6 272 46-456 3-278 (362)
104 KOG0301 Phospholipase A2-activ 99.9 1.2E-25 2.6E-30 207.5 24.5 273 28-456 10-285 (745)
105 KOG1332 Vesicle coat complex C 99.9 3.4E-26 7.4E-31 185.3 17.5 247 211-496 8-284 (299)
106 KOG0641 WD40 repeat protein [G 99.9 1.2E-24 2.7E-29 174.3 26.1 255 30-410 87-349 (350)
107 KOG4283 Transcription-coupled 99.9 4.7E-25 1E-29 183.6 24.1 309 30-456 41-362 (397)
108 KOG1332 Vesicle coat complex C 99.9 5.7E-26 1.2E-30 184.1 17.9 256 29-411 8-287 (299)
109 KOG0310 Conserved WD40 repeat- 99.9 2.6E-25 5.7E-30 197.5 23.6 241 32-412 68-311 (487)
110 KOG0268 Sof1-like rRNA process 99.9 2.1E-26 4.5E-31 196.8 15.4 279 89-497 58-344 (433)
111 KOG1407 WD40 repeat protein [F 99.9 9.5E-25 2.1E-29 178.7 22.8 238 91-453 14-254 (313)
112 KOG0274 Cdc4 and related F-box 99.9 4.5E-25 9.7E-30 211.5 24.5 252 13-415 232-487 (537)
113 KOG0639 Transducin-like enhanc 99.9 3.1E-25 6.6E-30 197.4 21.0 252 27-414 414-667 (705)
114 KOG0288 WD40 repeat protein Ti 99.9 1.4E-25 3E-30 194.9 18.3 241 30-408 217-459 (459)
115 KOG1273 WD40 repeat protein [G 99.9 8.6E-25 1.9E-29 183.7 22.3 292 35-412 26-324 (405)
116 KOG0772 Uncharacterized conser 99.9 2.1E-25 4.5E-30 199.1 18.7 262 31-408 213-485 (641)
117 KOG1274 WD40 repeat protein [G 99.9 6.6E-24 1.4E-28 202.2 29.8 252 29-411 10-263 (933)
118 KOG0289 mRNA splicing factor [ 99.9 2.2E-24 4.8E-29 188.6 24.1 244 30-409 259-505 (506)
119 KOG0299 U3 snoRNP-associated p 99.9 2.1E-24 4.5E-29 190.4 23.8 251 30-410 200-456 (479)
120 KOG0973 Histone transcription 99.9 1E-24 2.2E-29 211.8 23.8 266 29-412 66-357 (942)
121 KOG2096 WD40 repeat protein [G 99.9 7.9E-24 1.7E-28 178.2 25.8 305 30-456 84-399 (420)
122 KOG2919 Guanine nucleotide-bin 99.9 1.9E-24 4.1E-29 182.3 21.7 299 34-450 51-360 (406)
123 KOG1408 WD40 repeat protein [F 99.9 3.9E-25 8.5E-30 204.6 18.7 256 27-411 454-714 (1080)
124 KOG0301 Phospholipase A2-activ 99.9 2.4E-24 5.3E-29 199.0 23.2 281 85-496 2-286 (745)
125 KOG0300 WD40 repeat-containing 99.9 1.2E-24 2.5E-29 183.1 19.1 294 86-496 137-474 (481)
126 KOG0308 Conserved WD40 repeat- 99.9 4.3E-25 9.3E-30 202.5 17.1 273 114-480 29-308 (735)
127 KOG0650 WD40 repeat nucleolar 99.9 7.6E-24 1.7E-28 192.5 24.5 325 30-496 398-733 (733)
128 KOG0269 WD40 repeat-containing 99.9 6.3E-25 1.4E-29 205.3 16.3 245 35-412 90-342 (839)
129 KOG2055 WD40 repeat protein [G 99.9 1.5E-23 3.2E-28 185.0 23.8 295 32-410 213-512 (514)
130 KOG0302 Ribosome Assembly prot 99.9 1.2E-23 2.6E-28 181.0 21.7 278 106-496 148-436 (440)
131 KOG4328 WD40 protein [Function 99.9 1.4E-23 3.1E-28 184.9 22.6 262 31-413 185-453 (498)
132 KOG2445 Nuclear pore complex c 99.9 9.4E-23 2E-27 171.0 24.9 270 29-411 10-319 (361)
133 KOG0269 WD40 repeat-containing 99.9 4.4E-24 9.6E-29 199.6 18.4 234 216-492 89-333 (839)
134 KOG0321 WD40 repeat-containing 99.9 2.3E-23 5.1E-28 190.7 22.5 301 37-456 54-388 (720)
135 KOG0646 WD40 repeat protein [G 99.9 3.6E-23 7.8E-28 183.0 22.0 236 32-368 81-322 (476)
136 KOG2055 WD40 repeat protein [G 99.9 4.2E-22 9.2E-27 175.9 24.1 279 110-496 214-510 (514)
137 KOG0267 Microtubule severing p 99.9 1.4E-24 3E-29 201.4 8.8 218 110-433 29-248 (825)
138 KOG1539 WD repeat protein [Gen 99.9 4.9E-21 1.1E-25 180.9 30.4 330 35-496 162-604 (910)
139 KOG2048 WD40 repeat protein [G 99.9 1.4E-20 3.1E-25 174.0 32.4 394 31-496 109-546 (691)
140 KOG4283 Transcription-coupled 99.9 6.7E-22 1.4E-26 164.9 20.5 304 110-496 44-363 (397)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-20 5.1E-25 172.6 33.0 290 44-479 1-300 (300)
142 KOG1273 WD40 repeat protein [G 99.9 2.9E-21 6.2E-26 162.6 23.5 279 112-497 26-321 (405)
143 KOG0646 WD40 repeat protein [G 99.9 5E-22 1.1E-26 175.8 20.0 230 110-434 82-330 (476)
144 KOG0302 Ribosome Assembly prot 99.9 8.3E-22 1.8E-26 169.7 20.7 227 28-353 147-379 (440)
145 KOG0267 Microtubule severing p 99.9 1.4E-23 3.1E-28 194.8 10.1 235 29-403 25-261 (825)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-20 3.9E-25 173.3 31.0 263 32-433 30-300 (300)
147 KOG2445 Nuclear pore complex c 99.9 2.8E-21 6.1E-26 162.2 21.9 224 110-412 14-258 (361)
148 KOG1009 Chromatin assembly com 99.9 4.2E-21 9.2E-26 167.1 23.6 228 32-341 13-248 (434)
149 KOG1036 Mitotic spindle checkp 99.9 5E-21 1.1E-25 161.0 23.2 246 25-400 47-294 (323)
150 KOG4378 Nuclear protein COP1 [ 99.9 4.2E-21 9E-26 171.1 23.3 262 110-434 35-304 (673)
151 KOG1034 Transcriptional repres 99.9 5.3E-21 1.2E-25 162.0 22.4 282 30-414 36-341 (385)
152 KOG2919 Guanine nucleotide-bin 99.9 6.1E-21 1.3E-25 161.3 21.5 293 112-493 52-364 (406)
153 KOG4227 WD40 repeat protein [G 99.9 5.1E-21 1.1E-25 165.7 21.0 313 27-460 51-388 (609)
154 KOG1188 WD40 repeat protein [G 99.9 4.6E-21 1E-25 163.2 19.9 288 45-457 41-344 (376)
155 KOG1538 Uncharacterized conser 99.9 2.3E-20 5.1E-25 172.1 25.3 273 34-409 14-292 (1081)
156 KOG0307 Vesicle coat complex C 99.9 3.8E-22 8.2E-27 195.0 13.6 250 109-456 64-324 (1049)
157 KOG0639 Transducin-like enhanc 99.9 2.1E-21 4.6E-26 173.2 16.6 255 13-409 444-703 (705)
158 KOG0290 Conserved WD40 repeat- 99.9 5.3E-20 1.1E-24 153.4 23.7 208 211-495 147-362 (364)
159 KOG0270 WD40 repeat-containing 99.9 3.9E-21 8.4E-26 169.1 17.9 262 36-415 177-454 (463)
160 KOG0321 WD40 repeat-containing 99.9 7.1E-20 1.5E-24 168.2 24.0 268 211-496 97-389 (720)
161 KOG1274 WD40 repeat protein [G 99.9 8.9E-20 1.9E-24 174.4 25.5 272 110-489 14-290 (933)
162 KOG0303 Actin-binding protein 99.9 1.2E-19 2.7E-24 157.3 23.5 294 15-433 10-319 (472)
163 KOG0649 WD40 repeat protein [G 99.9 5.5E-19 1.2E-23 143.7 24.4 262 33-410 11-274 (325)
164 KOG1445 Tumor-specific antigen 99.9 5.7E-20 1.2E-24 168.6 20.9 144 334-496 590-748 (1012)
165 KOG4378 Nuclear protein COP1 [ 99.9 2.5E-20 5.5E-25 166.1 17.9 222 34-392 81-305 (673)
166 KOG1517 Guanine nucleotide bin 99.8 3.6E-19 7.7E-24 172.4 23.9 311 34-412 1066-1383(1387)
167 KOG0642 Cell-cycle nuclear pro 99.8 3.7E-20 8E-25 167.9 15.2 272 29-413 291-564 (577)
168 KOG0270 WD40 repeat-containing 99.8 2.1E-19 4.5E-24 158.3 19.4 198 211-456 240-446 (463)
169 KOG1034 Transcriptional repres 99.8 7.4E-20 1.6E-24 155.1 13.9 266 30-410 87-383 (385)
170 KOG4227 WD40 repeat protein [G 99.8 1.1E-18 2.3E-23 151.4 19.6 301 90-496 49-385 (609)
171 KOG0307 Vesicle coat complex C 99.8 1.4E-19 3.1E-24 177.2 15.6 260 25-413 57-330 (1049)
172 KOG1007 WD repeat protein TSSC 99.8 2.3E-18 5E-23 143.5 20.0 273 186-494 36-356 (370)
173 KOG0644 Uncharacterized conser 99.8 1.2E-19 2.6E-24 171.4 13.4 260 28-433 186-448 (1113)
174 KOG1963 WD40 repeat protein [G 99.8 2.5E-17 5.5E-22 157.4 29.0 314 29-496 202-536 (792)
175 KOG1007 WD repeat protein TSSC 99.8 3.6E-18 7.8E-23 142.4 20.4 260 30-411 61-362 (370)
176 KOG4328 WD40 protein [Function 99.8 2.3E-18 4.9E-23 152.4 19.0 245 211-496 183-448 (498)
177 KOG0650 WD40 repeat nucleolar 99.8 2.3E-18 4.9E-23 157.2 19.6 252 88-456 391-677 (733)
178 COG2319 FOG: WD40 repeat [Gene 99.8 6.8E-16 1.5E-20 150.2 37.5 323 29-496 62-398 (466)
179 KOG1524 WD40 repeat-containing 99.8 9.1E-18 2E-22 151.4 21.8 271 45-496 76-346 (737)
180 KOG1524 WD40 repeat-containing 99.8 7.6E-18 1.7E-22 151.9 19.1 206 227-495 76-282 (737)
181 KOG1538 Uncharacterized conser 99.8 1.2E-17 2.7E-22 154.4 20.3 263 111-491 14-285 (1081)
182 KOG0322 G-protein beta subunit 99.8 1.8E-17 3.9E-22 136.6 18.8 296 30-409 12-322 (323)
183 KOG1009 Chromatin assembly com 99.8 1.4E-17 3E-22 145.4 18.9 281 110-496 14-327 (434)
184 KOG0303 Actin-binding protein 99.8 1.6E-17 3.4E-22 144.5 18.8 212 29-355 78-297 (472)
185 KOG2110 Uncharacterized conser 99.8 1.1E-15 2.3E-20 132.2 28.3 240 32-412 5-250 (391)
186 KOG1587 Cytoplasmic dynein int 99.8 1.2E-16 2.5E-21 152.6 22.5 282 12-352 225-516 (555)
187 PRK11028 6-phosphogluconolacto 99.8 2.7E-15 5.8E-20 140.2 31.3 267 27-411 29-305 (330)
188 KOG1587 Cytoplasmic dynein int 99.8 6.6E-16 1.4E-20 147.5 27.2 223 110-412 243-474 (555)
189 PRK01742 tolB translocation pr 99.8 8.2E-17 1.8E-21 154.9 21.2 213 110-434 204-426 (429)
190 KOG1334 WD40 repeat protein [G 99.8 2E-17 4.3E-22 147.7 15.1 305 28-458 138-465 (559)
191 COG2319 FOG: WD40 repeat [Gene 99.8 2.1E-14 4.6E-19 139.7 38.1 316 33-496 110-440 (466)
192 KOG1445 Tumor-specific antigen 99.8 5.8E-17 1.3E-21 149.1 17.7 262 40-425 587-859 (1012)
193 PRK11028 6-phosphogluconolacto 99.7 3.9E-15 8.6E-20 139.0 30.2 238 215-496 35-302 (330)
194 KOG1240 Protein kinase contain 99.7 2.1E-15 4.5E-20 149.0 27.2 295 8-414 1028-1338(1431)
195 KOG1963 WD40 repeat protein [G 99.7 2.5E-15 5.5E-20 143.9 27.1 303 36-412 20-324 (792)
196 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.5E-21 145.4 15.4 266 92-458 289-560 (577)
197 KOG0290 Conserved WD40 repeat- 99.7 5.2E-16 1.1E-20 129.8 17.7 207 30-348 148-361 (364)
198 KOG1310 WD40 repeat protein [G 99.7 2.1E-16 4.6E-21 143.2 15.8 240 26-353 44-304 (758)
199 KOG1188 WD40 repeat protein [G 99.7 5.2E-16 1.1E-20 132.7 16.9 263 31-412 69-348 (376)
200 KOG1523 Actin-related protein 99.7 3.3E-15 7.1E-20 126.9 21.2 227 32-362 10-246 (361)
201 KOG4497 Uncharacterized conser 99.7 1.4E-14 3E-19 123.5 24.6 334 37-494 13-427 (447)
202 PRK01742 tolB translocation pr 99.7 9.6E-16 2.1E-20 147.5 20.3 217 29-391 200-426 (429)
203 KOG1272 WD40-repeat-containing 99.7 7.4E-17 1.6E-21 143.2 10.7 265 110-492 130-402 (545)
204 KOG1523 Actin-related protein 99.7 2.3E-15 5E-20 127.8 18.9 245 110-434 11-260 (361)
205 KOG0322 G-protein beta subunit 99.7 3.6E-16 7.8E-21 129.0 13.5 298 90-457 7-321 (323)
206 KOG1310 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 138.1 15.8 249 89-418 42-311 (758)
207 KOG2139 WD40 repeat protein [G 99.7 5.9E-14 1.3E-18 121.2 24.3 267 33-412 99-385 (445)
208 KOG0771 Prolactin regulatory e 99.7 2.2E-15 4.8E-20 132.7 15.9 202 36-295 148-355 (398)
209 KOG1334 WD40 repeat protein [G 99.7 8.3E-16 1.8E-20 137.5 13.2 309 87-496 132-464 (559)
210 PRK03629 tolB translocation pr 99.7 1E-13 2.2E-18 133.2 27.9 212 110-433 199-427 (429)
211 KOG2110 Uncharacterized conser 99.7 1.3E-13 2.9E-18 119.5 25.4 144 233-420 66-213 (391)
212 KOG0649 WD40 repeat protein [G 99.7 3.9E-14 8.4E-19 115.8 20.9 244 216-495 12-271 (325)
213 KOG1240 Protein kinase contain 99.7 7.9E-14 1.7E-18 138.1 26.2 241 84-422 1035-1284(1431)
214 KOG0771 Prolactin regulatory e 99.7 4.5E-15 9.8E-20 130.8 15.6 176 218-434 148-335 (398)
215 KOG1517 Guanine nucleotide bin 99.6 5.3E-14 1.1E-18 137.3 23.7 245 214-496 1109-1379(1387)
216 KOG2321 WD40 repeat protein [G 99.6 7.5E-14 1.6E-18 127.6 21.7 292 25-412 44-345 (703)
217 PF08662 eIF2A: Eukaryotic tra 99.6 7.3E-14 1.6E-18 118.1 17.9 147 219-410 10-179 (194)
218 PRK02889 tolB translocation pr 99.6 3.8E-13 8.3E-18 129.4 25.0 213 110-433 196-424 (427)
219 KOG2394 WD40 protein DMR-N9 [G 99.6 1.5E-13 3.2E-18 124.8 20.2 137 214-369 219-378 (636)
220 PRK03629 tolB translocation pr 99.6 3.6E-13 7.7E-18 129.4 24.2 214 212-480 196-428 (429)
221 PRK05137 tolB translocation pr 99.6 1.2E-12 2.6E-17 126.7 27.1 211 110-433 202-432 (435)
222 KOG2111 Uncharacterized conser 99.6 1E-11 2.2E-16 105.9 28.9 162 213-412 93-258 (346)
223 PRK04922 tolB translocation pr 99.6 4.6E-13 9.9E-18 129.3 24.1 212 110-433 204-432 (433)
224 KOG2315 Predicted translation 99.6 1.1E-11 2.3E-16 113.6 30.2 332 13-496 15-388 (566)
225 PRK02889 tolB translocation pr 99.6 3.3E-13 7.2E-18 129.8 21.7 208 29-366 192-415 (427)
226 KOG0644 Uncharacterized conser 99.6 3.2E-15 7E-20 142.0 7.5 281 86-496 179-466 (1113)
227 KOG4497 Uncharacterized conser 99.6 1.5E-13 3.3E-18 117.2 16.8 308 32-433 48-412 (447)
228 PRK04922 tolB translocation pr 99.6 5.2E-13 1.1E-17 129.0 21.5 207 29-366 200-423 (433)
229 KOG3881 Uncharacterized conser 99.5 9E-13 1.9E-17 115.2 19.1 258 31-415 54-325 (412)
230 COG2706 3-carboxymuconate cycl 99.5 8.9E-11 1.9E-15 102.5 30.8 292 12-413 19-324 (346)
231 KOG2139 WD40 repeat protein [G 99.5 1.8E-12 3.9E-17 112.2 19.9 242 215-489 99-365 (445)
232 KOG2394 WD40 protein DMR-N9 [G 99.5 3.9E-13 8.4E-18 122.1 16.0 190 223-433 182-384 (636)
233 PF02239 Cytochrom_D1: Cytochr 99.5 3.3E-11 7.1E-16 112.4 29.1 319 45-497 6-346 (369)
234 COG2706 3-carboxymuconate cycl 99.5 1.8E-10 3.9E-15 100.6 31.3 169 218-412 92-276 (346)
235 PF08662 eIF2A: Eukaryotic tra 99.5 2.4E-12 5.3E-17 108.8 18.5 117 213-362 58-187 (194)
236 PRK05137 tolB translocation pr 99.5 6.8E-12 1.5E-16 121.4 24.1 214 211-480 198-433 (435)
237 KOG2041 WD40 repeat protein [G 99.5 4.4E-12 9.4E-17 119.2 21.0 257 31-402 13-280 (1189)
238 PF02239 Cytochrom_D1: Cytochr 99.5 3.8E-12 8.1E-17 118.6 20.9 293 36-415 40-352 (369)
239 PF10282 Lactonase: Lactonase, 99.5 5.3E-10 1.1E-14 104.6 35.2 269 32-410 36-322 (345)
240 KOG3881 Uncharacterized conser 99.5 6.2E-12 1.3E-16 110.1 19.3 205 46-360 117-327 (412)
241 PF10282 Lactonase: Lactonase, 99.5 1.1E-09 2.3E-14 102.5 35.8 175 215-411 87-276 (345)
242 KOG1272 WD40-repeat-containing 99.5 4.3E-13 9.3E-18 119.7 11.8 272 35-407 132-406 (545)
243 TIGR02800 propeller_TolB tol-p 99.4 6.9E-11 1.5E-15 114.6 25.8 191 110-410 190-397 (417)
244 PRK04792 tolB translocation pr 99.4 7.4E-11 1.6E-15 114.0 25.6 167 218-433 265-446 (448)
245 PRK00178 tolB translocation pr 99.4 1.1E-10 2.3E-15 113.3 26.8 212 110-433 199-427 (430)
246 KOG2321 WD40 repeat protein [G 99.4 8.3E-11 1.8E-15 108.1 24.0 287 101-491 43-335 (703)
247 PRK04792 tolB translocation pr 99.4 3.7E-11 8E-16 116.0 21.7 206 30-366 215-437 (448)
248 PRK00178 tolB translocation pr 99.4 7.3E-11 1.6E-15 114.5 22.8 205 29-364 195-416 (430)
249 TIGR02800 propeller_TolB tol-p 99.4 8.4E-11 1.8E-15 114.0 22.5 203 30-363 187-406 (417)
250 COG5354 Uncharacterized protei 99.4 3E-10 6.5E-15 103.1 23.6 294 32-412 32-397 (561)
251 KOG2111 Uncharacterized conser 99.4 2.7E-10 5.8E-15 97.4 21.3 233 216-496 7-254 (346)
252 KOG2315 Predicted translation 99.4 3E-10 6.6E-15 104.3 22.1 190 190-434 194-411 (566)
253 KOG0974 WD-repeat protein WDR6 99.4 4.6E-11 9.9E-16 117.3 17.8 147 222-411 141-289 (967)
254 PRK01029 tolB translocation pr 99.3 5.8E-10 1.3E-14 106.9 24.7 115 216-357 282-407 (428)
255 KOG1409 Uncharacterized conser 99.3 3.5E-10 7.5E-15 97.7 19.2 203 32-297 68-273 (404)
256 PRK01029 tolB translocation pr 99.3 2.6E-09 5.7E-14 102.4 26.4 173 217-433 233-424 (428)
257 KOG2314 Translation initiation 99.3 4E-09 8.6E-14 96.9 24.9 277 30-410 248-573 (698)
258 KOG1064 RAVE (regulator of V-A 99.3 3.2E-11 6.8E-16 124.3 12.5 219 8-363 2184-2408(2439)
259 KOG4547 WD40 repeat-containing 99.3 5.4E-10 1.2E-14 103.4 19.4 115 211-353 99-221 (541)
260 KOG0974 WD-repeat protein WDR6 99.3 2.9E-10 6.3E-15 111.8 18.0 150 38-296 139-290 (967)
261 KOG0280 Uncharacterized conser 99.3 1.3E-09 2.7E-14 92.3 19.3 158 217-412 124-286 (339)
262 KOG2314 Translation initiation 99.2 2.4E-08 5.3E-13 91.9 28.1 312 36-496 214-571 (698)
263 PF04762 IKI3: IKI3 family; I 99.2 1.1E-07 2.4E-12 98.8 35.9 316 31-412 74-458 (928)
264 KOG0280 Uncharacterized conser 99.2 2.4E-09 5.1E-14 90.7 18.3 164 211-412 162-335 (339)
265 KOG4547 WD40 repeat-containing 99.2 5.3E-09 1.1E-13 97.0 22.0 192 224-456 3-217 (541)
266 KOG1354 Serine/threonine prote 99.2 4.8E-10 1E-14 96.8 13.4 237 214-496 25-299 (433)
267 PF04762 IKI3: IKI3 family; I 99.2 3.4E-07 7.4E-12 95.2 36.2 283 110-496 76-454 (928)
268 KOG4532 WD40-like repeat conta 99.2 6.2E-09 1.3E-13 87.1 18.9 168 217-411 161-332 (344)
269 KOG1409 Uncharacterized conser 99.2 3.2E-09 6.8E-14 91.9 17.2 250 86-456 13-267 (404)
270 KOG2041 WD40 repeat protein [G 99.1 9.6E-10 2.1E-14 103.8 14.1 240 214-488 14-277 (1189)
271 KOG0882 Cyclophilin-related pe 99.1 3E-09 6.6E-14 95.2 16.0 326 30-407 7-369 (558)
272 COG4946 Uncharacterized protei 99.1 2.7E-08 5.8E-13 89.9 21.4 147 28-283 355-507 (668)
273 COG4946 Uncharacterized protei 99.1 4E-07 8.6E-12 82.6 28.0 173 40-341 327-506 (668)
274 PLN02919 haloacid dehalogenase 99.1 2.4E-07 5.1E-12 98.3 31.2 188 217-414 685-892 (1057)
275 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.1E-06 2.4E-11 80.4 31.1 253 120-415 54-335 (352)
276 KOG0309 Conserved WD40 repeat- 99.1 1.1E-09 2.3E-14 103.8 11.2 295 31-456 23-336 (1081)
277 KOG3914 WD repeat protein WDR4 99.0 4.7E-09 1E-13 92.9 13.2 80 211-299 148-228 (390)
278 PRK04043 tolB translocation pr 99.0 1.2E-07 2.5E-12 90.5 23.7 198 33-363 188-409 (419)
279 KOG4190 Uncharacterized conser 99.0 7.1E-10 1.5E-14 101.7 6.9 220 90-412 728-950 (1034)
280 KOG4714 Nucleoporin [Nuclear s 99.0 1.9E-08 4.1E-13 83.9 14.4 149 223-411 98-255 (319)
281 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.2E-06 2.5E-11 80.2 27.5 252 40-361 53-338 (352)
282 TIGR03300 assembly_YfgL outer 99.0 1E-06 2.2E-11 84.1 27.5 224 227-495 146-376 (377)
283 KOG1912 WD40 repeat protein [G 99.0 1.3E-07 2.7E-12 90.8 20.4 390 31-482 54-577 (1062)
284 PRK04043 tolB translocation pr 98.9 4.3E-07 9.4E-12 86.6 23.9 150 214-411 232-401 (419)
285 KOG0309 Conserved WD40 repeat- 98.9 1.1E-08 2.4E-13 97.2 11.9 239 217-495 70-336 (1081)
286 COG5170 CDC55 Serine/threonine 98.9 2.5E-08 5.4E-13 85.3 12.2 243 213-497 25-308 (460)
287 KOG1064 RAVE (regulator of V-A 98.9 1.2E-08 2.6E-13 106.0 11.4 186 111-412 2210-2400(2439)
288 PF15492 Nbas_N: Neuroblastoma 98.9 1.7E-06 3.7E-11 73.9 21.9 235 37-366 2-272 (282)
289 COG5354 Uncharacterized protei 98.9 3.6E-06 7.7E-11 77.3 24.9 263 110-488 33-334 (561)
290 KOG1912 WD40 repeat protein [G 98.9 8.5E-07 1.8E-11 85.3 21.7 258 32-411 15-305 (1062)
291 KOG4714 Nucleoporin [Nuclear s 98.8 9.1E-08 2E-12 79.9 12.5 142 123-295 101-255 (319)
292 PF15492 Nbas_N: Neuroblastoma 98.8 8.6E-06 1.9E-10 69.7 24.2 183 216-412 45-261 (282)
293 KOG4190 Uncharacterized conser 98.8 4.5E-08 9.7E-13 90.2 11.2 178 29-299 732-911 (1034)
294 PLN02919 haloacid dehalogenase 98.8 3.3E-06 7.2E-11 89.8 26.4 133 216-356 741-891 (1057)
295 PF08450 SGL: SMP-30/Gluconola 98.8 1.7E-05 3.8E-10 70.6 26.3 226 37-398 4-243 (246)
296 TIGR03300 assembly_YfgL outer 98.7 8.4E-06 1.8E-10 77.8 25.3 275 43-424 64-351 (377)
297 PF07433 DUF1513: Protein of u 98.7 1.8E-05 3.9E-10 70.0 24.2 234 35-401 7-277 (305)
298 PF08450 SGL: SMP-30/Gluconola 98.7 5.9E-05 1.3E-09 67.2 28.2 178 217-433 42-234 (246)
299 KOG2114 Vacuolar assembly/sort 98.7 8.3E-06 1.8E-10 79.7 22.9 242 13-365 5-256 (933)
300 KOG4532 WD40-like repeat conta 98.7 3.4E-06 7.4E-11 71.1 17.2 168 112-352 161-331 (344)
301 KOG2695 WD40 repeat protein [G 98.7 1.6E-07 3.4E-12 81.7 9.6 151 226-414 225-380 (425)
302 KOG2695 WD40 repeat protein [G 98.6 1.1E-07 2.5E-12 82.5 8.3 132 213-366 251-389 (425)
303 KOG3914 WD repeat protein WDR4 98.6 6.8E-07 1.5E-11 79.5 13.2 158 217-415 65-228 (390)
304 PF00400 WD40: WD domain, G-be 98.6 5.8E-08 1.3E-12 58.3 4.1 31 30-60 9-39 (39)
305 KOG1832 HIV-1 Vpr-binding prot 98.6 6.7E-08 1.4E-12 94.0 6.2 216 31-397 1100-1318(1516)
306 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00017 3.8E-09 67.8 27.7 318 41-489 1-347 (353)
307 KOG1832 HIV-1 Vpr-binding prot 98.5 8.3E-08 1.8E-12 93.3 4.8 204 86-415 1090-1296(1516)
308 KOG3617 WD40 and TPR repeat-co 98.5 1.2E-05 2.7E-10 78.4 18.3 108 36-243 19-131 (1416)
309 KOG2066 Vacuolar assembly/sort 98.5 9.4E-06 2E-10 78.8 17.1 192 29-352 36-233 (846)
310 PF00400 WD40: WD domain, G-be 98.5 4E-07 8.6E-12 54.6 5.2 38 88-139 2-39 (39)
311 PF13360 PQQ_2: PQQ-like domai 98.5 7.6E-05 1.7E-09 66.2 21.9 157 226-414 76-234 (238)
312 KOG0882 Cyclophilin-related pe 98.5 5.6E-06 1.2E-10 74.8 13.9 221 104-415 4-236 (558)
313 PF07433 DUF1513: Protein of u 98.4 4.4E-05 9.6E-10 67.5 19.0 115 212-350 160-283 (305)
314 KOG1920 IkappaB kinase complex 98.4 0.00024 5.3E-09 72.6 25.1 241 33-353 69-323 (1265)
315 KOG1008 Uncharacterized conser 98.3 2.2E-07 4.8E-12 87.4 2.0 208 110-411 57-276 (783)
316 PRK11138 outer membrane biogen 98.3 0.0014 3E-08 63.0 27.7 154 227-415 161-317 (394)
317 KOG2066 Vacuolar assembly/sort 98.3 5.2E-05 1.1E-09 73.9 16.3 144 216-415 41-192 (846)
318 KOG2114 Vacuolar assembly/sort 98.2 0.00041 8.9E-09 68.4 21.3 181 212-424 62-257 (933)
319 KOG1645 RING-finger-containing 98.2 0.0002 4.4E-09 64.2 17.2 78 30-144 191-269 (463)
320 PF11768 DUF3312: Protein of u 98.2 0.00011 2.5E-09 69.5 16.5 79 323-419 259-338 (545)
321 KOG1275 PAB-dependent poly(A) 98.2 4.9E-05 1.1E-09 75.0 14.0 143 224-408 185-340 (1118)
322 COG0823 TolB Periplasmic compo 98.2 0.00022 4.8E-09 67.8 18.3 160 212-413 190-361 (425)
323 PRK11138 outer membrane biogen 98.1 0.0018 4E-08 62.1 24.9 102 277-415 257-358 (394)
324 KOG1920 IkappaB kinase complex 98.1 0.00032 6.8E-09 71.8 19.7 207 110-412 69-324 (1265)
325 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0075 1.6E-07 57.8 28.5 40 324-364 217-257 (410)
326 KOG1645 RING-finger-containing 98.1 0.00013 2.9E-09 65.3 15.1 80 209-297 188-269 (463)
327 PF06433 Me-amine-dh_H: Methyl 98.1 0.0062 1.3E-07 55.0 25.1 265 114-419 40-328 (342)
328 KOG1275 PAB-dependent poly(A) 98.1 8.1E-05 1.7E-09 73.6 13.7 152 111-351 179-341 (1118)
329 KOG1008 Uncharacterized conser 98.1 4.7E-06 1E-10 78.7 4.9 211 31-353 55-276 (783)
330 PF08596 Lgl_C: Lethal giant l 98.0 0.0022 4.8E-08 60.6 22.5 268 34-400 3-326 (395)
331 PF06977 SdiA-regulated: SdiA- 98.0 0.0017 3.7E-08 56.8 20.2 220 33-349 22-247 (248)
332 COG0823 TolB Periplasmic compo 98.0 0.00024 5.3E-09 67.6 16.2 183 32-342 192-388 (425)
333 PF06977 SdiA-regulated: SdiA- 98.0 0.0036 7.8E-08 54.8 20.9 221 211-496 18-248 (248)
334 PF08596 Lgl_C: Lethal giant l 98.0 0.0076 1.7E-07 57.0 24.6 246 111-415 3-295 (395)
335 PF11768 DUF3312: Protein of u 98.0 3.1E-05 6.7E-10 73.2 8.5 77 29-144 256-332 (545)
336 KOG3621 WD40 repeat-containing 97.9 0.00029 6.3E-09 67.9 14.2 216 31-361 32-253 (726)
337 PRK02888 nitrous-oxide reducta 97.9 0.0075 1.6E-07 59.0 22.8 30 384-413 324-354 (635)
338 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.026 5.7E-07 53.3 26.7 78 320-415 304-403 (415)
339 PF13360 PQQ_2: PQQ-like domai 97.8 0.0076 1.6E-07 53.3 21.6 109 226-359 122-236 (238)
340 PF04053 Coatomer_WDAD: Coatom 97.8 0.012 2.6E-07 56.4 23.7 217 213-495 31-259 (443)
341 PF14583 Pectate_lyase22: Olig 97.8 0.012 2.5E-07 54.3 21.3 167 213-410 186-381 (386)
342 KOG3621 WD40 repeat-containing 97.8 0.00044 9.6E-09 66.7 12.6 123 212-353 31-155 (726)
343 KOG3617 WD40 and TPR repeat-co 97.8 0.0015 3.2E-08 64.5 16.1 117 163-294 12-131 (1416)
344 PF08553 VID27: VID27 cytoplas 97.8 0.0023 5.1E-08 64.8 18.1 103 228-352 544-647 (794)
345 PF06433 Me-amine-dh_H: Methyl 97.7 0.035 7.5E-07 50.3 24.5 241 219-497 40-319 (342)
346 PF04053 Coatomer_WDAD: Coatom 97.7 0.03 6.6E-07 53.8 24.2 147 226-411 117-263 (443)
347 PRK02888 nitrous-oxide reducta 97.6 0.0097 2.1E-07 58.3 19.4 72 324-411 321-405 (635)
348 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.037 8.1E-07 52.2 22.0 277 32-399 42-346 (353)
349 PF00780 CNH: CNH domain; Int 97.5 0.069 1.5E-06 48.4 23.9 229 224-496 5-253 (275)
350 COG3490 Uncharacterized protei 97.5 0.0041 8.9E-08 53.7 13.3 86 213-299 224-315 (366)
351 cd00216 PQQ_DH Dehydrogenases 97.4 0.15 3.2E-06 50.5 28.2 109 278-415 303-429 (488)
352 PF08553 VID27: VID27 cytoplas 97.4 0.034 7.4E-07 56.7 21.1 143 277-496 494-645 (794)
353 PF05694 SBP56: 56kDa selenium 97.3 0.07 1.5E-06 49.8 20.3 120 233-360 220-350 (461)
354 PF14583 Pectate_lyase22: Olig 97.3 0.12 2.5E-06 47.9 21.4 155 220-414 86-276 (386)
355 KOG1897 Damage-specific DNA bi 97.3 0.27 5.9E-06 50.3 29.9 223 226-494 684-938 (1096)
356 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.035 7.6E-07 41.2 14.1 65 214-290 42-110 (111)
357 KOG4640 Anaphase-promoting com 97.3 0.0021 4.5E-08 61.5 9.7 76 214-299 20-97 (665)
358 KOG4640 Anaphase-promoting com 97.3 0.0012 2.7E-08 62.9 8.3 93 324-432 21-114 (665)
359 smart00320 WD40 WD40 repeats. 97.3 0.00052 1.1E-08 40.1 4.1 31 30-60 10-40 (40)
360 PF04841 Vps16_N: Vps16, N-ter 97.2 0.22 4.7E-06 47.9 27.1 165 215-412 81-248 (410)
361 COG3204 Uncharacterized protei 97.1 0.17 3.6E-06 44.5 18.9 185 110-366 86-275 (316)
362 PF03178 CPSF_A: CPSF A subuni 97.1 0.16 3.4E-06 47.3 20.7 105 277-411 43-158 (321)
363 smart00320 WD40 WD40 repeats. 97.0 0.0014 3E-08 38.2 4.4 28 110-139 13-40 (40)
364 PF03178 CPSF_A: CPSF A subuni 97.0 0.17 3.7E-06 47.1 20.0 137 235-411 62-203 (321)
365 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.053 1.1E-06 40.2 12.4 100 266-405 2-109 (111)
366 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0042 9.1E-08 38.2 5.7 32 32-63 11-42 (47)
367 COG3490 Uncharacterized protei 96.9 0.093 2E-06 45.7 15.4 104 266-399 70-180 (366)
368 KOG2395 Protein involved in va 96.9 0.026 5.6E-07 53.3 12.9 100 231-352 399-500 (644)
369 KOG2395 Protein involved in va 96.9 0.023 5E-07 53.5 12.6 140 278-494 348-496 (644)
370 COG3204 Uncharacterized protei 96.8 0.31 6.8E-06 42.9 19.5 176 212-411 83-264 (316)
371 PF02897 Peptidase_S9_N: Proly 96.7 0.61 1.3E-05 45.2 28.5 33 33-65 124-161 (414)
372 COG3386 Gluconolactonase [Carb 96.6 0.56 1.2E-05 42.9 23.7 127 216-366 112-255 (307)
373 KOG1897 Damage-specific DNA bi 96.6 1.1 2.4E-05 46.2 30.0 319 110-488 531-887 (1096)
374 PRK13616 lipoprotein LpqB; Pro 96.6 0.17 3.6E-06 50.9 17.1 166 214-411 349-526 (591)
375 KOG4649 PQQ (pyrrolo-quinoline 96.5 0.16 3.4E-06 43.7 13.9 111 270-415 17-128 (354)
376 KOG2079 Vacuolar assembly/sort 96.4 0.018 3.9E-07 58.9 9.4 102 277-409 100-202 (1206)
377 PF12234 Rav1p_C: RAVE protein 96.3 0.075 1.6E-06 52.8 12.7 89 10-140 15-103 (631)
378 COG3391 Uncharacterized conser 96.2 0.88 1.9E-05 43.4 19.1 173 216-433 75-262 (381)
379 COG3391 Uncharacterized conser 96.1 1.3 2.9E-05 42.1 23.1 159 216-414 117-287 (381)
380 PF10647 Gmad1: Lipoprotein Lp 96.1 0.32 6.9E-06 43.3 14.7 139 325-489 25-185 (253)
381 PRK13616 lipoprotein LpqB; Pro 96.1 1.9 4.1E-05 43.5 22.1 127 217-358 399-531 (591)
382 COG3386 Gluconolactonase [Carb 96.0 1.2 2.5E-05 40.8 22.9 150 220-410 30-193 (307)
383 KOG2079 Vacuolar assembly/sort 95.9 0.037 7.9E-07 56.8 8.6 84 334-433 98-182 (1206)
384 KOG4649 PQQ (pyrrolo-quinoline 95.9 1 2.3E-05 38.9 28.0 64 44-146 23-86 (354)
385 PF00780 CNH: CNH domain; Int 95.9 1.3 2.9E-05 40.0 26.2 252 42-365 5-267 (275)
386 PF10647 Gmad1: Lipoprotein Lp 95.8 0.75 1.6E-05 40.9 15.7 69 216-285 113-186 (253)
387 PF12894 Apc4_WD40: Anaphase-p 95.7 0.041 8.8E-07 33.9 5.2 30 110-141 12-41 (47)
388 TIGR03606 non_repeat_PQQ dehyd 95.5 2.4 5.2E-05 41.0 18.7 61 214-275 29-90 (454)
389 PF08728 CRT10: CRT10; InterP 95.4 2.5 5.4E-05 42.9 18.8 75 214-293 163-245 (717)
390 KOG2377 Uncharacterized conser 95.3 2.6 5.7E-05 39.7 17.4 78 30-142 64-141 (657)
391 KOG1916 Nuclear protein, conta 95.2 0.012 2.6E-07 58.9 2.6 131 214-358 180-328 (1283)
392 PF07995 GSDH: Glucose / Sorbo 95.2 2.6 5.6E-05 39.3 23.6 57 216-274 3-59 (331)
393 PF14870 PSII_BNR: Photosynthe 95.2 2.3 5.1E-05 38.7 21.8 118 212-349 184-301 (302)
394 PF10168 Nup88: Nuclear pore c 95.2 0.51 1.1E-05 48.5 14.0 96 323-420 84-189 (717)
395 PF15390 DUF4613: Domain of un 95.2 0.7 1.5E-05 44.8 13.7 70 219-295 117-187 (671)
396 cd00216 PQQ_DH Dehydrogenases 95.2 3.8 8.1E-05 40.7 31.5 25 124-148 111-135 (488)
397 PF15390 DUF4613: Domain of un 95.1 3.7 8E-05 40.2 21.0 66 213-284 154-221 (671)
398 PF12234 Rav1p_C: RAVE protein 94.9 1.8 4E-05 43.4 16.2 117 216-352 31-156 (631)
399 KOG2444 WD40 repeat protein [G 94.8 0.14 3.1E-06 43.1 7.2 105 277-412 71-179 (238)
400 KOG3630 Nuclear pore complex, 94.4 0.72 1.6E-05 48.2 12.5 154 216-399 102-262 (1405)
401 PF10313 DUF2415: Uncharacteri 94.4 0.16 3.5E-06 30.3 4.8 29 325-353 2-34 (43)
402 PF10313 DUF2415: Uncharacteri 94.3 0.2 4.3E-06 29.9 5.1 32 264-295 1-34 (43)
403 KOG2444 WD40 repeat protein [G 94.2 0.14 3.1E-06 43.1 5.9 66 225-298 69-136 (238)
404 PF10168 Nup88: Nuclear pore c 94.1 1.9 4.1E-05 44.5 15.0 92 378-496 82-177 (717)
405 PF05096 Glu_cyclase_2: Glutam 94.1 3.9 8.4E-05 36.1 21.7 168 205-413 35-206 (264)
406 PF14870 PSII_BNR: Photosynthe 94.0 4.8 0.0001 36.7 28.8 150 224-412 113-262 (302)
407 TIGR02604 Piru_Ver_Nterm putat 93.8 4.1 8.8E-05 38.7 16.0 110 215-340 14-140 (367)
408 KOG2280 Vacuolar assembly/sort 93.8 7.8 0.00017 39.1 17.6 89 189-290 63-151 (829)
409 TIGR02604 Piru_Ver_Nterm putat 93.7 4 8.6E-05 38.8 15.8 30 33-62 14-55 (367)
410 PHA02713 hypothetical protein; 93.6 8.1 0.00018 39.1 18.3 24 391-414 512-537 (557)
411 PF07569 Hira: TUP1-like enhan 93.5 0.48 1E-05 41.0 8.3 79 271-353 18-96 (219)
412 COG4257 Vgb Streptogramin lyas 93.0 5.9 0.00013 34.9 18.0 164 215-425 104-277 (353)
413 PF07995 GSDH: Glucose / Sorbo 92.9 7.9 0.00017 36.1 24.8 26 34-60 3-28 (331)
414 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.9 11 0.00024 37.7 23.1 171 228-415 122-338 (527)
415 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.5 12 0.00027 37.4 24.3 27 273-299 310-338 (527)
416 PF05694 SBP56: 56kDa selenium 92.4 4 8.7E-05 38.6 12.9 149 189-341 221-391 (461)
417 KOG4460 Nuclear pore complex, 92.4 2.9 6.3E-05 40.1 12.0 90 380-496 103-196 (741)
418 PF08728 CRT10: CRT10; InterP 92.3 13 0.00028 38.1 17.2 165 226-409 49-245 (717)
419 PRK13684 Ycf48-like protein; P 92.0 11 0.00023 35.3 15.9 119 212-351 212-330 (334)
420 KOG1916 Nuclear protein, conta 91.8 0.19 4.1E-06 50.9 3.9 109 6-141 150-265 (1283)
421 PF07569 Hira: TUP1-like enhan 91.7 1.4 3.1E-05 38.1 8.9 78 386-496 16-93 (219)
422 PF13449 Phytase-like: Esteras 91.5 12 0.00026 34.9 22.5 184 215-410 20-249 (326)
423 COG5167 VID27 Protein involved 91.4 4.4 9.4E-05 38.9 11.9 101 230-352 531-632 (776)
424 PHA02713 hypothetical protein; 91.1 14 0.00031 37.4 16.4 20 334-353 512-534 (557)
425 KOG2280 Vacuolar assembly/sort 90.8 21 0.00044 36.4 18.4 39 324-363 217-256 (829)
426 KOG4499 Ca2+-binding protein R 90.7 9.9 0.00022 32.6 18.4 143 214-390 108-263 (310)
427 TIGR03606 non_repeat_PQQ dehyd 90.6 18 0.00038 35.2 17.0 33 32-64 29-61 (454)
428 PF02897 Peptidase_S9_N: Proly 90.4 18 0.00039 35.0 24.8 114 217-353 126-261 (414)
429 KOG3630 Nuclear pore complex, 90.1 7.3 0.00016 41.4 13.2 103 215-340 156-260 (1405)
430 PF14761 HPS3_N: Hermansky-Pud 89.8 6.7 0.00014 33.3 10.7 128 328-496 22-161 (215)
431 PF14727 PHTB1_N: PTHB1 N-term 89.8 20 0.00042 34.5 26.9 52 233-294 153-204 (418)
432 KOG1900 Nuclear pore complex, 89.3 12 0.00026 40.4 14.3 80 214-295 178-273 (1311)
433 KOG4441 Proteins containing BT 89.1 28 0.0006 35.3 20.8 24 41-64 282-311 (571)
434 COG5290 IkappaB kinase complex 88.9 27 0.00058 35.9 15.5 71 267-353 250-325 (1243)
435 PF02333 Phytase: Phytase; In 88.6 22 0.00047 33.5 20.8 151 235-412 127-292 (381)
436 PF13449 Phytase-like: Esteras 88.3 22 0.00047 33.1 18.9 131 264-400 20-166 (326)
437 KOG4460 Nuclear pore complex, 88.3 10 0.00022 36.7 11.7 88 264-353 104-199 (741)
438 COG5167 VID27 Protein involved 88.0 14 0.00031 35.6 12.5 103 277-410 480-591 (776)
439 TIGR03118 PEPCTERM_chp_1 conse 87.8 20 0.00044 32.3 21.9 57 344-415 222-284 (336)
440 PF03022 MRJP: Major royal jel 87.7 21 0.00046 32.4 17.9 154 236-411 35-216 (287)
441 COG4590 ABC-type uncharacteriz 87.6 3.7 8.1E-05 38.7 8.5 153 323-496 220-384 (733)
442 PLN00033 photosystem II stabil 87.5 28 0.0006 33.4 17.5 113 213-349 279-396 (398)
443 KOG2377 Uncharacterized conser 87.4 18 0.00039 34.4 12.6 119 110-296 67-187 (657)
444 KOG1900 Nuclear pore complex, 87.0 17 0.00036 39.5 13.6 160 233-412 97-274 (1311)
445 PF14781 BBS2_N: Ciliary BBSom 86.7 13 0.00029 28.9 13.3 80 36-144 2-84 (136)
446 PF12657 TFIIIC_delta: Transcr 85.9 7.9 0.00017 32.1 9.1 30 383-412 88-123 (173)
447 PF14655 RAB3GAP2_N: Rab3 GTPa 85.4 9 0.00019 36.7 10.1 41 263-308 307-347 (415)
448 PHA03098 kelch-like protein; P 85.3 44 0.00096 33.7 17.2 21 277-297 439-467 (534)
449 PRK13684 Ycf48-like protein; P 85.2 33 0.00071 32.1 29.5 112 263-405 172-283 (334)
450 TIGR02276 beta_rpt_yvtn 40-res 84.9 5 0.00011 23.6 5.7 34 333-367 1-36 (42)
451 KOG2247 WD40 repeat-containing 84.9 0.14 3E-06 48.2 -1.9 131 265-434 36-170 (615)
452 COG4590 ABC-type uncharacteriz 84.3 6.2 0.00013 37.3 8.2 106 225-353 279-387 (733)
453 PLN00033 photosystem II stabil 84.0 41 0.00089 32.3 17.3 155 217-407 241-396 (398)
454 KOG4441 Proteins containing BT 83.5 54 0.0012 33.3 18.6 24 391-414 475-503 (571)
455 COG5290 IkappaB kinase complex 83.5 41 0.00088 34.6 13.7 31 32-62 112-142 (1243)
456 PF07676 PD40: WD40-like Beta 83.5 3 6.5E-05 24.2 4.1 29 31-59 7-38 (39)
457 PF07676 PD40: WD40-like Beta 83.0 4.6 9.9E-05 23.4 4.8 20 469-488 8-27 (39)
458 PF12657 TFIIIC_delta: Transcr 82.5 11 0.00024 31.2 8.6 32 265-296 87-123 (173)
459 PHA03098 kelch-like protein; P 81.6 62 0.0013 32.6 17.0 22 391-412 487-513 (534)
460 PRK10115 protease 2; Provision 81.3 74 0.0016 33.3 28.9 33 33-65 127-164 (686)
461 KOG2247 WD40 repeat-containing 80.8 0.3 6.4E-06 46.1 -1.5 100 215-340 75-176 (615)
462 PF05096 Glu_cyclase_2: Glutam 80.7 41 0.00088 29.9 19.2 144 228-399 102-249 (264)
463 TIGR03118 PEPCTERM_chp_1 conse 79.9 47 0.001 30.1 19.7 27 36-62 26-52 (336)
464 TIGR03074 PQQ_membr_DH membran 79.6 88 0.0019 33.1 23.5 22 394-415 461-482 (764)
465 PF12341 DUF3639: Protein of u 78.0 6.6 0.00014 20.8 3.6 26 33-60 2-27 (27)
466 KOG4499 Ca2+-binding protein R 77.1 48 0.001 28.7 18.1 99 324-434 158-264 (310)
467 PF14781 BBS2_N: Ciliary BBSom 75.8 36 0.00078 26.6 11.9 110 269-410 4-125 (136)
468 PF14727 PHTB1_N: PTHB1 N-term 75.3 81 0.0018 30.4 25.1 57 277-351 146-203 (418)
469 PF11715 Nup160: Nucleoporin N 74.3 17 0.00037 36.7 8.8 75 224-299 156-253 (547)
470 PF08801 Nucleoporin_N: Nup133 71.7 99 0.0021 30.0 13.0 30 383-412 192-221 (422)
471 PF14761 HPS3_N: Hermansky-Pud 70.4 69 0.0015 27.4 18.0 30 214-243 134-163 (215)
472 PF11715 Nup160: Nucleoporin N 70.1 19 0.00041 36.4 8.0 40 110-149 215-256 (547)
473 PF10214 Rrn6: RNA polymerase 69.8 1.6E+02 0.0034 31.4 22.2 192 31-296 78-278 (765)
474 PF01436 NHL: NHL repeat; Int 69.4 14 0.0003 19.7 3.8 25 35-59 4-28 (28)
475 PHA02790 Kelch-like protein; P 68.6 1.3E+02 0.0028 29.9 17.1 22 391-412 446-472 (480)
476 COG4257 Vgb Streptogramin lyas 67.7 91 0.002 27.9 14.3 158 215-412 62-220 (353)
477 PF01731 Arylesterase: Arylest 67.3 38 0.00083 24.1 6.7 28 384-411 57-85 (86)
478 KOG1983 Tomosyn and related SN 67.2 1.1E+02 0.0023 33.7 12.9 32 33-64 36-67 (993)
479 PF03088 Str_synth: Strictosid 66.7 17 0.00037 26.1 4.8 44 282-343 33-76 (89)
480 PRK10115 protease 2; Provision 65.2 1.8E+02 0.004 30.4 27.0 111 216-352 128-255 (686)
481 PF14269 Arylsulfotran_2: Aryl 65.0 24 0.00052 32.3 6.8 74 325-409 145-219 (299)
482 KOG2727 Rab3 GTPase-activating 61.8 86 0.0019 33.1 10.2 73 325-415 323-411 (1244)
483 PF01731 Arylesterase: Arylest 60.6 42 0.00091 23.9 5.9 29 325-353 55-85 (86)
484 PF10214 Rrn6: RNA polymerase 59.4 2.5E+02 0.0054 30.0 22.7 138 213-353 78-233 (765)
485 PF11635 Med16: Mediator compl 58.9 2.5E+02 0.0054 29.9 20.7 81 324-405 260-345 (753)
486 KOG1983 Tomosyn and related SN 58.7 2.2E+02 0.0048 31.3 13.4 25 389-413 243-267 (993)
487 smart00564 PQQ beta-propeller 57.1 20 0.00044 19.5 3.2 21 394-414 8-28 (33)
488 PF11725 AvrE: Pathogenicity f 55.9 3.8E+02 0.0081 31.0 19.7 79 33-142 438-517 (1774)
489 PHA02790 Kelch-like protein; P 55.8 2.2E+02 0.0048 28.3 14.1 22 274-296 446-472 (480)
490 KOG3522 Predicted guanine nucl 55.3 82 0.0018 32.8 8.8 134 189-353 556-698 (925)
491 KOG3616 Selective LIM binding 54.3 35 0.00075 34.8 6.1 69 212-292 12-81 (1636)
492 KOG1896 mRNA cleavage and poly 54.0 2E+02 0.0043 31.6 11.6 143 234-411 1064-1214(1366)
493 PF13570 PQQ_3: PQQ-like domai 52.6 28 0.0006 20.3 3.4 21 391-411 20-40 (40)
494 TIGR02608 delta_60_rpt delta-6 52.4 51 0.0011 21.2 4.7 29 34-62 2-35 (55)
495 COG4247 Phy 3-phytase (myo-ino 50.4 1.8E+02 0.0039 25.7 10.9 113 270-411 62-187 (364)
496 PF11635 Med16: Mediator compl 49.9 3.5E+02 0.0075 28.8 22.9 81 264-347 260-345 (753)
497 KOG0783 Uncharacterized conser 48.4 3.6E+02 0.0078 28.6 12.0 28 216-244 230-257 (1267)
498 KOG4659 Uncharacterized conser 48.3 4.5E+02 0.0097 29.6 20.0 19 468-486 660-678 (1899)
499 KOG1898 Splicing factor 3b, su 46.3 4.3E+02 0.0093 28.9 17.3 200 236-477 854-1066(1205)
500 PF08801 Nucleoporin_N: Nup133 46.0 2.9E+02 0.0063 26.8 14.6 31 264-295 190-220 (422)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-52 Score=358.36 Aligned_cols=323 Identities=17% Similarity=0.292 Sum_probs=283.2
Q ss_pred CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
..-+|.++|.|++|+|+|.+||+|+.|.++|+||+.+.. ++.+.++|.
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-----------------------p~~t~KgH~--------- 157 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-----------------------PLFTCKGHK--------- 157 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-----------------------cceeecCCc---------
Confidence 344799999999999999999999999999999998863 478899999
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..|.+++| +|||+.|++|+.||+|++||..+++++.
T Consensus 158 ---~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g--------------------------------------- 193 (480)
T KOG0271|consen 158 ---NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIG--------------------------------------- 193 (480)
T ss_pred ---cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCccc---------------------------------------
Confidence 99999999 7999999999999999999999887432
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-----CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-----DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
+. +.+|...|++++|.| ..+.|+++ .||.|+|||+. .+.++.. +.
T Consensus 194 --------------------~~-l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~-------ls 244 (480)
T KOG0271|consen 194 --------------------RA-LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRT-------LS 244 (480)
T ss_pred --------------------cc-ccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEE-------ec
Confidence 11 389999999999964 67789998 99999999999 6666665 78
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe--------
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-------- 332 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-------- 332 (497)
+|+.+|+|+.|--+| +|++++.|++|++|+...|.++ +.+.+ |...|+.++.+
T Consensus 245 gHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r~lkG-------------HahwvN~lalsTdy~LRtg 305 (480)
T KOG0271|consen 245 GHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----RELKG-------------HAHWVNHLALSTDYVLRTG 305 (480)
T ss_pred cCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----Hhhcc-------------cchheeeeeccchhhhhcc
Confidence 999999999999775 9999999999999999998776 55555 45677777666
Q ss_pred ---eCC-------------------------CEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933 333 ---NDG-------------------------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 383 (497)
Q Consensus 333 ---~~g-------------------------~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (497)
|.+ +.|++|+| .++.+|+.....+++.++.+|...+
T Consensus 306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV--------------- 370 (480)
T KOG0271|consen 306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV--------------- 370 (480)
T ss_pred ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe---------------
Confidence 223 34899876 9999999887677999999999876
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCC
Q 010933 384 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG 460 (497)
Q Consensus 384 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~ 460 (497)
+.+.||||+++||+++.|..|++|+-.+|+.+ .+|++|-.+|+.++++. |.+. |++|+.|.. ++| .+..
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-asfRGHv~~VYqvawsa--DsRL-----lVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-ASFRGHVAAVYQVAWSA--DSRL-----LVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCCCcchh-hhhhhccceeEEEEecc--CccE-----EEEcCCCceEEEEEeeeee
Confidence 79999999999999999999999999999776 99999999999999998 7777 999999999 999 6677
Q ss_pred CcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933 461 HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 496 (497)
Q Consensus 461 ~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~ 496 (497)
...++.+|...|.+++|+|||..+++|+.|. +++|.
T Consensus 443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 7888999999999999999999999999655 66774
No 2
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-50 Score=337.09 Aligned_cols=426 Identities=52% Similarity=0.826 Sum_probs=353.6
Q ss_pred cccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccc
Q 010933 9 SASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYR 88 (497)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (497)
...+.|+|.|+|+.. +...+-|.++.|..+|.+||+|+.+|.|.++.-+.... .+|.
T Consensus 7 ~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~ey~ 63 (433)
T KOG1354|consen 7 NEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GEYN 63 (433)
T ss_pred chhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------ccee
Confidence 356679999999863 55778999999999999999999999999998654321 2778
Q ss_pred ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933 89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 168 (497)
Q Consensus 89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
+..+++.|++||+|++++++++.|+.++|++..+...++..+.|.+|++|.+.....+. ...+... .+
T Consensus 64 ~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~----------~~- 131 (433)
T KOG1354|consen 64 FQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPE----------EG- 131 (433)
T ss_pred eeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccc----------cC-
Confidence 99999999999999999999999999999976677889999999999999997654332 1111100 00
Q ss_pred ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCcee
Q 010933 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 248 (497)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~ 248 (497)
+.+....-..+.+-..+......|.+.+..+|+..|++++++.|++.+++++|-.|.+|+++...+.
T Consensus 132 -------------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~s 198 (433)
T KOG1354|consen 132 -------------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQS 198 (433)
T ss_pred -------------CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCc
Confidence 0001111112233333334456788888889999999999999999999999999999999999999
Q ss_pred eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933 249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 328 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (497)
+.++++||..++.....|++..|+|..+++|+..+..|.|++.|+|...++....+.++. ++.+....+|.+....|..
T Consensus 199 FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe-pedp~~rsffseiIsSISD 277 (433)
T KOG1354|consen 199 FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE-PEDPSSRSFFSEIISSISD 277 (433)
T ss_pred eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc-ccCCcchhhHHHHhhhhhc
Confidence 999999999999999999999999998899999999999999999999999998899988 8889999999999999999
Q ss_pred EEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 329 IKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 329 ~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
+.|+++|+|+++-+.-+|++||+....+++.+++.|......+|++|++++|++...++|+.++.+++||+..+..++|+
T Consensus 278 vKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 278 VKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred eEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 99999999999998899999999888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCCEEEEE
Q 010933 409 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 487 (497)
Q Consensus 409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~ 487 (497)
...|.....++++...+...-.... .+ .+++++.+.. .+| ....++...|.+.+|||..+.+|++
T Consensus 358 ~~~gsk~d~tl~asr~~~~~~~~~k---~~-----~V~~~g~r~~~~~~------vd~ldf~kkilh~aWhp~en~ia~a 423 (433)
T KOG1354|consen 358 LARGSKEDFTLEASRKNMKPRKVLK---LR-----LVSSSGKRKRDEIS------VDALDFRKKILHTAWHPKENSIAVA 423 (433)
T ss_pred CCCCcceeecccccccCCccccccc---ce-----eeecCCCccccccc------cchhhhhhHHHhhccCCccceeeee
Confidence 8888777777776665532222211 11 1344444433 333 5567788899999999999999999
Q ss_pred eCCceEEEeC
Q 010933 488 NGNSLFFHYA 497 (497)
Q Consensus 488 ~~~~~~i~~~ 497 (497)
..+++|||++
T Consensus 424 atnnlyif~~ 433 (433)
T KOG1354|consen 424 ATNNLYIFQD 433 (433)
T ss_pred ecCceEEecC
Confidence 9999999974
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-46 Score=324.07 Aligned_cols=288 Identities=19% Similarity=0.275 Sum_probs=254.2
Q ss_pred CCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933 24 NPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 103 (497)
Q Consensus 24 ~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 103 (497)
....+++.+.+|..+.||+|++.||||+.+|.+++|+..+.. .+.+|.||.
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~------ 217 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT------ 217 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc------
Confidence 344556678999999999999999999999999999988764 378899999
Q ss_pred cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
+.|.++.|+|-.++..+++|+.||++++|++.+....
T Consensus 218 ------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l------------------------------------- 254 (459)
T KOG0272|consen 218 ------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL------------------------------------- 254 (459)
T ss_pred ------cceeeEEEccCCCccceeeeccCCceeeeccCCCcch-------------------------------------
Confidence 8899999986434678999999999999999875422
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
.. +.+|...|..++|+|+|++|+++ .|.+-++||+++...... .++|
T Consensus 255 -----------------------~~-l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~--------QEGH 302 (459)
T KOG0272|consen 255 -----------------------QD-LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL--------QEGH 302 (459)
T ss_pred -----------------------hh-hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh--------hccc
Confidence 22 27999999999999999999999 999999999995444433 6899
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 341 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 341 (497)
+..|.+++|.|+| .++++|+.|..-+|||+|+|+.+ ..+.+ |..+|.+|+|+|+|-.||+|
T Consensus 303 s~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----m~L~g-------------H~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 303 SKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----MFLAG-------------HIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred ccccceeEecCCC-ceeeccCccchhheeecccCcEE----EEecc-------------cccceeeEeECCCceEEeecC
Confidence 9999999999999 99999999999999999999865 45444 67899999999999999998
Q ss_pred ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
+|++++|||++. .+++.++.+|.+.| +.+.|+| .|.+|+|++.|++++||...+...+ +++.
T Consensus 365 ~Dnt~kVWDLR~-r~~ly~ipAH~nlV---------------S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~-ksLa 427 (459)
T KOG0272|consen 365 SDNTCKVWDLRM-RSELYTIPAHSNLV---------------SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL-KSLA 427 (459)
T ss_pred CCCcEEEeeecc-cccceecccccchh---------------hheEecccCCeEEEEcccCcceeeecCCCcccc-hhhc
Confidence 569999999997 88899999999986 6899998 7899999999999999999988555 9999
Q ss_pred ccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
+|.+.|-++.+++ +++. +++++.|.. ++|.
T Consensus 428 GHe~kV~s~Dis~--d~~~-----i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 GHEGKVISLDISP--DSQA-----IATSSFDRTIKLWR 458 (459)
T ss_pred CCccceEEEEecc--CCce-----EEEeccCceeeecc
Confidence 9999999999999 7777 999999999 9993
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-45 Score=313.33 Aligned_cols=284 Identities=16% Similarity=0.242 Sum_probs=246.4
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
-+|...|.|++|+|||+.||+|+.||+|++||.+++++ ....|.+|.
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----------------------~g~~l~gH~----------- 200 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----------------------IGRALRGHK----------- 200 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----------------------ccccccCcc-----------
Confidence 36999999999999999999999999999999998863 356789999
Q ss_pred ccceeEEEEEe---cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 109 EEKINRVRWCA---APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 109 ~~~i~~l~~~~---s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..|++++|.| .|..++|++++.||.|+|||+..+.+.
T Consensus 201 -K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~--------------------------------------- 240 (480)
T KOG0271|consen 201 -KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV--------------------------------------- 240 (480)
T ss_pred -cceeEEeecccccCCCccceecccCCCCEEEEEccCceEE---------------------------------------
Confidence 9999999987 577889999999999999999877643
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
..+ .+|+.+|+|+.|-.+| +|++| .|++|++|+.. .+.+... +.+|..
T Consensus 241 ---------------------~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~-dG~~~r~-------lkGHah 289 (480)
T KOG0271|consen 241 ---------------------RTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL-DGKLCRE-------LKGHAH 289 (480)
T ss_pred ---------------------EEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEcc-chhHHHh-------hcccch
Confidence 333 7999999999998776 88888 99999999998 5666654 899999
Q ss_pred CeEEEEEe-----------CCC------------------------CcEEEEEeCCCeEEEEEccCCcccccccceeccc
Q 010933 265 VITSAEFH-----------PIY------------------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA 309 (497)
Q Consensus 265 ~i~~~~~~-----------~~~------------------------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~ 309 (497)
.|..++.+ |.+ ...|++|+.|.++.+|+-...+.. +..
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---i~r---- 362 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---ITR---- 362 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc---hhh----
Confidence 99999887 222 135999999999999997654311 122
Q ss_pred ccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933 310 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 388 (497)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (497)
..+|..-|+.+.||||++|+|+++. ..|++||.++ ++.+.++++|-..+ +.++|
T Consensus 363 ---------mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~V---------------Yqvaw 417 (480)
T KOG0271|consen 363 ---------MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAAV---------------YQVAW 417 (480)
T ss_pred ---------hhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhcccee---------------EEEEe
Confidence 3457789999999999999999974 9999999997 99999999999876 79999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 389 SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 389 s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+.|.++|++|+.|.++++|++++. .+...|.+|.++|..+.++| +|+. +++|+.|.. ++|
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwsp--DG~r-----V~sggkdkv~~lw 478 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSP--DGQR-----VASGGKDKVLRLW 478 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecC--CCce-----eecCCCceEEEee
Confidence 999999999999999999999987 55589999999999999999 7777 899999998 888
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-42 Score=299.39 Aligned_cols=277 Identities=16% Similarity=0.219 Sum_probs=244.7
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..+|..+.| +.++..|++||.+|.+++|+..+....
T Consensus 175 ~rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~------------------------------------------ 210 (459)
T KOG0272|consen 175 TRPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLL------------------------------------------ 210 (459)
T ss_pred CCcceeeEe--ecCCCeEEEeecCCceeEeecCCccee------------------------------------------
Confidence 388999999 689999999999999999999876532
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
.++ .+|...+.++.|+|. +..+++| .||++++|+++ +...+. .+.+|...
T Consensus 211 ------------------~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-~e~~l~-------~l~gH~~R 263 (459)
T KOG0272|consen 211 ------------------QTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-QETPLQ-------DLEGHLAR 263 (459)
T ss_pred ------------------EEE-eccccceeeEEEccCCCccceeeeccCCceeeeccC-CCcchh-------hhhcchhh
Confidence 223 899999999999996 6789999 99999999999 444544 38899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 344 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 344 (497)
|..++|+|+| ++|++++.|.+-++||++++... ... .+|...|.+++|.|||.++++|+ |.
T Consensus 264 Vs~VafHPsG-~~L~TasfD~tWRlWD~~tk~El----L~Q-------------EGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 264 VSRVAFHPSG-KFLGTASFDSTWRLWDLETKSEL----LLQ-------------EGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred heeeeecCCC-ceeeecccccchhhcccccchhh----Hhh-------------cccccccceeEecCCCceeeccCccc
Confidence 9999999999 99999999999999999998755 333 35678999999999999999985 58
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
.-+|||+++ ++++..+.+|...+ .+++|+|+|..|||||.|++++|||++.... ..++.+|.+
T Consensus 326 ~~RvWDlRt-gr~im~L~gH~k~I---------------~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~n 388 (459)
T KOG0272|consen 326 LGRVWDLRT-GRCIMFLAGHIKEI---------------LSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSN 388 (459)
T ss_pred hhheeeccc-CcEEEEecccccce---------------eeEeECCCceEEeecCCCCcEEEeeeccccc-ceecccccc
Confidence 889999998 99999999998865 6999999999999999999999999997755 599999999
Q ss_pred ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEeC
Q 010933 425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHYA 497 (497)
Q Consensus 425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~~ 497 (497)
.|..+.|+|. .+++ |+++++|+. +|| ........+.+|+.+|.+++.+|++..+++++ +..+++|++
T Consensus 389 lVS~Vk~~p~-~g~f-----L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 389 LVSQVKYSPQ-EGYF-----LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred hhhheEeccc-CCeE-----EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 9999999994 7777 999999999 999 34456778899999999999999999999999 667999974
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-39 Score=289.98 Aligned_cols=374 Identities=17% Similarity=0.229 Sum_probs=285.6
Q ss_pred ccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY 89 (497)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (497)
+..||||+..+++ |..-|+|+.|+|||.++|+.+.||+|.|||-.++++
T Consensus 176 eGPPFKFk~s~r~--------HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~----------------------- 224 (603)
T KOG0318|consen 176 EGPPFKFKSSFRE--------HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK----------------------- 224 (603)
T ss_pred eCCCeeeeecccc--------cccceeeEEECCCCCeEEEecCCccEEEEcCCCccE-----------------------
Confidence 3458888888886 999999999999999999999999999999988865
Q ss_pred ccccc---ccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933 90 KTEFQ---SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 166 (497)
Q Consensus 90 ~~~~~---~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
+.++. +|+ +.|++++| +||++.|++++.|.+++|||+.+.++.....+...- +
T Consensus 225 vg~l~~~~aHk------------GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v----------~ 280 (603)
T KOG0318|consen 225 VGELEDSDAHK------------GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV----------E 280 (603)
T ss_pred EEEecCCCCcc------------ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCch----------h
Confidence 55565 787 99999999 789999999999999999999998876654333221 1
Q ss_pred cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC
Q 010933 167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 245 (497)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~ 245 (497)
...+.+.+. ...+.+.++ +|.+.+++.+... +++++ .+|...|+++..+|+++.|++| .||.|.-|+..+
T Consensus 281 dqqvG~lWq--kd~lItVSl--~G~in~ln~~d~~---~~~~i-~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~- 351 (603)
T KOG0318|consen 281 DQQVGCLWQ--KDHLITVSL--SGTINYLNPSDPS---VLKVI-SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS- 351 (603)
T ss_pred ceEEEEEEe--CCeEEEEEc--CcEEEEecccCCC---hhhee-cccccceeEEEEcCCCCEEEeeccCceEEEEecCC-
Confidence 223333333 223333333 7788888887653 55555 8999999999999999999999 999999999984
Q ss_pred ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933 246 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 325 (497)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (497)
+..-.. .-+.|...|.+++-+..+ .+++++.|.++++.++........ ..++. ..+
T Consensus 352 g~~~~~------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~--~~~~l--------------g~Q 407 (603)
T KOG0318|consen 352 GTSDRL------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKS--EVVKL--------------GSQ 407 (603)
T ss_pred cccccc------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCccccc--ceeec--------------CCC
Confidence 333322 136799999999988764 588899999999999876543211 11111 123
Q ss_pred ccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933 326 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 326 i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 405 (497)
..+++..+++.+++...++.|.+..-. +.+.++...-.. .+++++|+++.+|.|+.|++|+
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~---~~~~~~~~~y~~----------------s~vAv~~~~~~vaVGG~Dgkvh 468 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQ---TKVSSIPIGYES----------------SAVAVSPDGSEVAVGGQDGKVH 468 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecC---Ccceeecccccc----------------ceEEEcCCCCEEEEecccceEE
Confidence 448888888878777777666665532 122222211111 4799999999999999999999
Q ss_pred EEEcCCCC-cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCC-CcccccccCCCeEEEEEecC
Q 010933 406 IFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG-HHELSYNLSSKLLHLAWHPT 480 (497)
Q Consensus 406 vw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~-~~~~~~~~~~~i~~l~~~p~ 480 (497)
||.+...+ .....+..|.+++..++++| ++.+ ||+|...++ .+| ...+ ......-|+.+|++|+|+|+
T Consensus 469 vysl~g~~l~ee~~~~~h~a~iT~vaySp--d~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~ 541 (603)
T KOG0318|consen 469 VYSLSGDELKEEAKLLEHRAAITDVAYSP--DGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN 541 (603)
T ss_pred EEEecCCcccceeeeecccCCceEEEECC--CCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC
Confidence 99998765 33457889999999999999 7777 999999999 999 2222 33446679999999999999
Q ss_pred CCEEEEEe-CCceEEEeC
Q 010933 481 TNLIACAN-GNSLFFHYA 497 (497)
Q Consensus 481 ~~~la~~~-~~~~~i~~~ 497 (497)
..++|+|+ +.+++||+.
T Consensus 542 n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 542 NKLVATGSLDTNVIIYSV 559 (603)
T ss_pred ceEEEeccccceEEEEEc
Confidence 99999999 667999973
No 7
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-41 Score=279.39 Aligned_cols=438 Identities=44% Similarity=0.684 Sum_probs=333.5
Q ss_pred cccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccc
Q 010933 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYK 90 (497)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (497)
...|+++|.|++..........+.|+++.|...|.|||+|...|+|.+|.-+... +| +|++.
T Consensus 5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-----------~c-------eykf~ 66 (460)
T COG5170 5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-----------GC-------EYKFF 66 (460)
T ss_pred hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc-----------cc-------chhhh
Confidence 4479999999999888888889999999999999999999999999999865432 34 78999
Q ss_pred ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933 91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 170 (497)
Q Consensus 91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (497)
++|++|+.||+|++++++++.|+.+.|+.......++.++.|++|++|.+....++.+..-+... ++..+-+.++
T Consensus 67 teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~-----~~~~~~~g~~ 141 (460)
T COG5170 67 TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD-----SFHSPMGGPL 141 (460)
T ss_pred hhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc-----ccccccCCCc
Confidence 99999999999999999999999999985445567889999999999999877655443332222 0111111000
Q ss_pred ccCCCCCcccccccccccCcceEEEeec---CCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce
Q 010933 171 NEHNPPSFAHGYHLEWTENMATKIANVG---NSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 247 (497)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~ 247 (497)
.. ...+++-.+. ......+.+.+...|...|++++++.|.+.+++++|-.|.+|+++....
T Consensus 142 ~s----------------~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~ 205 (460)
T COG5170 142 TS----------------TKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDG 205 (460)
T ss_pred CC----------------HHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCC
Confidence 00 0011111111 0112234445557899999999999999999999999999999998899
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 327 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 327 (497)
++.+++++|..+......|++..|+|..++.+...+..|.|++-|+|+..++....+.++. ...+....+|.+....|.
T Consensus 206 sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eivsSIS 284 (460)
T COG5170 206 SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIVSSIS 284 (460)
T ss_pred ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHhhhhc
Confidence 9999999999988888999999999998788999999999999999999888887777776 556666677888889999
Q ss_pred EEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933 328 DIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 407 (497)
Q Consensus 328 ~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw 407 (497)
.+.|+++|+|+++-+.-++++||.+....++.++..|......+|++|+++++++...+.||.|.+.+++|+..+..-+|
T Consensus 285 D~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 285 DFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred ceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 99999999999999889999999999899999999999999999999999999999999999999999999999999888
Q ss_pred EcCCCCcc----eEEEeccCcce---eeeEee-------cCCCcccccccceeEeeccCceecCCCCCcccccccCCCeE
Q 010933 408 SHGVGSAG----GITVEAGKNEN---RKPILQ-------AAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLL 473 (497)
Q Consensus 408 ~~~~~~~~----~~~~~~~~~~v---~~~~~~-------~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~ 473 (497)
-..+.... ...+..|..+- .+..-. ...+.+ ..+.+.+|..+- ..-.....+.+.|.
T Consensus 365 p~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~r------s~ss~a~g~~~~---~eD~d~ld~~k~il 435 (460)
T COG5170 365 PTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWR------SVSSSADGFVVA---CEDPDNLDLLKKIL 435 (460)
T ss_pred ccccCCCCcceEEEecccCCcccccCccccccccccccccccccc------ccccccCcceee---ccCcchhHHHHHHH
Confidence 75543211 12222222111 111100 000111 111111111000 01122345667888
Q ss_pred EEEEecCCCEEEEEeCCceEEEeC
Q 010933 474 HLAWHPTTNLIACANGNSLFFHYA 497 (497)
Q Consensus 474 ~l~~~p~~~~la~~~~~~~~i~~~ 497 (497)
+-.|||..+-+|++..++++||++
T Consensus 436 h~sWhp~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 436 HRSWHPFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred hhccCCcccceeeeecCceEEEec
Confidence 999999999999999999999974
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-38 Score=262.03 Aligned_cols=286 Identities=12% Similarity=0.196 Sum_probs=237.6
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|...|.++.|++|+++|++++.||.+.|||.-+..+ ..-++-..
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-----------------------~haipl~s------------ 97 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-----------------------VHAIPLPS------------ 97 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc-----------------------eeEEecCc------------
Confidence 6999999999999999999999999999999876543 22233333
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|..++| +|.+.++++|+.|+...||++...+....
T Consensus 98 ~WVMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~----------------------------------------- 134 (343)
T KOG0286|consen 98 SWVMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGN----------------------------------------- 134 (343)
T ss_pred eeEEEEEE--CCCCCeEEecCcCceeEEEeccccccccc-----------------------------------------
Confidence 67899999 68899999999999999999975431110
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
..+...+.+|.+.+.++.|.+|+ .|+++ .|.+..+||++ .++.... +.+|.+.|.+
T Consensus 135 --------------~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie-~g~~~~~-------f~GH~gDV~s 191 (343)
T KOG0286|consen 135 --------------VRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE-TGQQTQV-------FHGHTGDVMS 191 (343)
T ss_pred --------------ceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc-cceEEEE-------ecCCcccEEE
Confidence 11122238999999999999866 66777 99999999999 5555554 7899999999
Q ss_pred EEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeE
Q 010933 269 AEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 346 (497)
Q Consensus 269 ~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i 346 (497)
++++| ++ +.+++|+-|+..++||+|.+..+ +.|.+ |...|+++.|.|+|.-+++|+| ++.
T Consensus 192 lsl~p~~~-ntFvSg~cD~~aklWD~R~~~c~----qtF~g-------------hesDINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 192 LSLSPSDG-NTFVSGGCDKSAKLWDVRSGQCV----QTFEG-------------HESDINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred EecCCCCC-CeEEecccccceeeeeccCccee----Eeecc-------------cccccceEEEccCCCeeeecCCCcee
Confidence 99999 66 99999999999999999998655 45544 6789999999999999999976 999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 426 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 426 (497)
|+||++. .+.+..+. |.. .+.++++++||..|++|++|..|.++.+||.-.++.. ..|.+|.+.|
T Consensus 254 RlyDlRa-D~~~a~ys-~~~------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v-g~L~GHeNRv 318 (343)
T KOG0286|consen 254 RLYDLRA-DQELAVYS-HDS------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV-GVLAGHENRV 318 (343)
T ss_pred EEEeecC-CcEEeeec-cCc------------ccCCceeEEEcccccEEEeeecCCceeEeeccccceE-EEeeccCCee
Confidence 9999997 77777776 332 3345589999999999999999999999998887554 8999999999
Q ss_pred eeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 427 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.++..+| +|.. +++|+=|.. +||
T Consensus 319 Scl~~s~--DG~a-----v~TgSWDs~lriW 342 (343)
T KOG0286|consen 319 SCLGVSP--DGMA-----VATGSWDSTLRIW 342 (343)
T ss_pred EEEEECC--CCcE-----EEecchhHheeec
Confidence 9999999 6655 999999888 888
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-38 Score=292.37 Aligned_cols=393 Identities=14% Similarity=0.136 Sum_probs=292.9
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|+.||.-++|+|.|..||+|+.||.+++||+..+ .+...|+||.
T Consensus 102 a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-----------------------~~th~fkG~g----------- 147 (775)
T KOG0319|consen 102 AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG-----------------------YCTHSFKGHG----------- 147 (775)
T ss_pred hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC-----------------------EEEEEecCCC-----------
Confidence 359999999999999999999999999999999876 4578899999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccc--------cCccccCCCCC--
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAE--------KNFMNEHNPPS-- 177 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-- 177 (497)
+.|.++.|+|......|+++..|+++++||+.+... ......+.. .+..+.+..+. +.++....-..
T Consensus 148 -GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S-~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~ 225 (775)
T KOG0319|consen 148 -GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKS-AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK 225 (775)
T ss_pred -ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhh-heeeeeeccCCceEEEeccCcEEEEeehhhhh
Confidence 999999998877777789999999999999985432 221111111 12222222111 11111110000
Q ss_pred ------------------------cccccccccccCcceEEEeecCCc--------------------------------
Q 010933 178 ------------------------FAHGYHLEWTENMATKIANVGNSV-------------------------------- 201 (497)
Q Consensus 178 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 201 (497)
..++.+++ +.+.+++|+.+...
T Consensus 226 ~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG--~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ 303 (775)
T KOG0319|consen 226 KLKTLPLYESLESVVRLREELGGKGEYIITAG--GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ 303 (775)
T ss_pred hhheechhhheeeEEEechhcCCcceEEEEec--CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc
Confidence 01111111 23345555443210
Q ss_pred ----------------------------------------cceeee---------eeccCCCCCeeEEEeCCCCCEEEEE
Q 010933 202 ----------------------------------------HARCQK---------VYPHAHDFNINSISNNSDCETFVSA 232 (497)
Q Consensus 202 ----------------------------------------~~~~~~---------~~~~~h~~~v~~~~~~~~~~~l~~~ 232 (497)
+..+++ .+..+|+..|.++....+|-+|++|
T Consensus 304 nl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~ 383 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATG 383 (775)
T ss_pred eEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEe
Confidence 000000 1237899999999977788899999
Q ss_pred -cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccc
Q 010933 233 -DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 311 (497)
Q Consensus 233 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~ 311 (497)
.|+++++|.++ .+..... .. ....+|.+.|.+++++..+..+|+++|.|+++++|++...+.... +.
T Consensus 384 sKD~svilWr~~-~~~~~~~-~~--a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~~ 451 (775)
T KOG0319|consen 384 SKDKSVILWRLN-NNCSKSL-CV--AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------PI 451 (775)
T ss_pred cCCceEEEEEec-CCcchhh-hh--hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------cc
Confidence 99999999885 2221111 00 125689999999999988888999999999999999987332211 01
Q ss_pred ccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933 312 SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390 (497)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 390 (497)
....+.+...|...|++++++|+.+++|+|+ |.+.+||++.. .....++.+|...+ +++.|+|
T Consensus 452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGv---------------w~V~Fs~ 515 (775)
T KOG0319|consen 452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGV---------------WCVSFSK 515 (775)
T ss_pred eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccce---------------EEEEecc
Confidence 1111233457889999999999999999996 59999999995 89999999999875 8999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccc
Q 010933 391 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN 467 (497)
Q Consensus 391 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~ 467 (497)
..+.|+|+|.|++|+||.+++.... +++.+|...|....|.. ++.. |++++.||. ++| ++++-...+-.
T Consensus 516 ~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~--~~~q-----liS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 516 NDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIR--NGKQ-----LISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred ccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeee--CCcE-----EEeccCCCcEEEEeccchhhhhhhhh
Confidence 9999999999999999999998665 99999999999999987 6666 899999999 999 66677778889
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCc-eEEE
Q 010933 468 LSSKLLHLAWHPTTNLIACANGNS-LFFH 495 (497)
Q Consensus 468 ~~~~i~~l~~~p~~~~la~~~~~~-~~i~ 495 (497)
|+.+|.+++.+|.+.++++|+.|+ +.+|
T Consensus 588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred ccceeEEEeecCccceeEecCCCeEEEEe
Confidence 999999999999999999999777 5555
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-37 Score=255.41 Aligned_cols=296 Identities=16% Similarity=0.223 Sum_probs=230.5
Q ss_pred cccCCcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
.-+|++.|+.++..+. .+.|++++.|..+.+|++..... .-...++.|.||+
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------~~G~~~r~~~GHs--------- 63 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------KYGVPVRRLTGHS--------- 63 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------ccCceeeeeeccc---------
Confidence 3469999999999986 57889999999999999976532 1224577889999
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..|..+.. ++|++++++++.|+++++||+.+++.
T Consensus 64 ---H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~----------------------------------------- 97 (315)
T KOG0279|consen 64 ---HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGES----------------------------------------- 97 (315)
T ss_pred ---eEecceEE--ccCCceEEeccccceEEEEEecCCcE-----------------------------------------
Confidence 88999999 78999999999999999999998762
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
.+.| .+|...|.+++|++|.+.+++| .|.+|++|+.- +...+.+- -..+.+.
T Consensus 98 -------------------t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~------~~~~~~W 150 (315)
T KOG0279|consen 98 -------------------TRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH------EDSHREW 150 (315)
T ss_pred -------------------EEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe------cCCCcCc
Confidence 2333 8999999999999999999999 99999999998 55444431 2234899
Q ss_pred eEEEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c
Q 010933 266 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 343 (497)
Q Consensus 266 i~~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~ 343 (497)
|.++.|+|+. ...|++++.|+.+++||+++-+.. .. +.+|.+.++.+++||||.++++|+ +
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----~~-------------~~gh~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----TT-------------FIGHSGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----hc-------------cccccccEEEEEECCCCCEEecCCCC
Confidence 9999999983 378999999999999999986543 22 345779999999999999999985 5
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 423 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 423 (497)
|.+.+||++. ++.+..+.+... |.+++|+|+.-.|+.+. +..|+|||++++..+ ..++...
T Consensus 214 g~~~LwdL~~-~k~lysl~a~~~----------------v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v-~~l~~d~ 274 (315)
T KOG0279|consen 214 GEAMLWDLNE-GKNLYSLEAFDI----------------VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV-EELKLDG 274 (315)
T ss_pred ceEEEEEccC-CceeEeccCCCe----------------EeeEEecCCceeEeecc-CCceEEEeccchhhh-hhccccc
Confidence 9999999986 777777765443 26999999976665544 456999999987544 2222110
Q ss_pred cceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 424 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
... +. ........+++|++||..|.+|- ++.+.+|+
T Consensus 275 ~g~-----s~--------------------------------~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 275 IGP-----SS--------------------------------KAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ccc-----cc--------------------------------ccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 000 00 00011446899999999999988 55588886
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.1e-37 Score=248.38 Aligned_cols=289 Identities=15% Similarity=0.220 Sum_probs=237.1
Q ss_pred CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCC
Q 010933 45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 124 (497)
Q Consensus 45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~ 124 (497)
-+||+++.|.+||+|...+| .+..+++-.+ +.|+.+.. .|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG-----------------------~C~rTiqh~d------------sqVNrLei--Tpdk~ 53 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG-----------------------ICSRTIQHPD------------SQVNRLEI--TPDKK 53 (311)
T ss_pred eEEEeccCcceeeeeehhcC-----------------------eEEEEEecCc------------cceeeEEE--cCCcc
Confidence 48999999999999999988 4467776555 88999999 68888
Q ss_pred EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccce
Q 010933 125 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR 204 (497)
Q Consensus 125 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (497)
.|++++. ..||+||+.++...
T Consensus 54 ~LAaa~~-qhvRlyD~~S~np~---------------------------------------------------------- 74 (311)
T KOG0315|consen 54 DLAAAGN-QHVRLYDLNSNNPN---------------------------------------------------------- 74 (311)
T ss_pred hhhhccC-CeeEEEEccCCCCC----------------------------------------------------------
Confidence 8887776 47999999887621
Q ss_pred eeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe
Q 010933 205 CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 283 (497)
Q Consensus 205 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 283 (497)
++.+| .+|...|.++.|..+|+.+++| +||+++|||++. ..+.. ...|.++|+++..+|+. ..|++|.
T Consensus 75 Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR--------~~~~~spVn~vvlhpnQ-teLis~d 143 (311)
T KOG0315|consen 75 PVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQR--------NYQHNSPVNTVVLHPNQ-TELISGD 143 (311)
T ss_pred ceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccch--------hccCCCCcceEEecCCc-ceEEeec
Confidence 44444 8999999999999999999999 999999999993 33332 44577999999999998 8999999
Q ss_pred CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCC-----Cce
Q 010933 284 SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMD-----STP 357 (497)
Q Consensus 284 ~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~-----~~~ 357 (497)
.+|.|++||+.+..... ..+.. ....|.++...|||.+++++.+ |..++|++-.. -.+
T Consensus 144 qsg~irvWDl~~~~c~~---~liPe-------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTH---ELIPE-------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred CCCcEEEEEccCCcccc---ccCCC-------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE
Confidence 99999999998764321 11111 1357999999999999999977 99999998642 245
Q ss_pred eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCc
Q 010933 358 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 437 (497)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 437 (497)
+..++.|..-+ +.+.+|||+++||++|.|.+++||+.++.-+....+++|...++..+|+. ++
T Consensus 208 ~~k~~ah~~~i---------------l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~--dg 270 (311)
T KOG0315|consen 208 VHKFQAHNGHI---------------LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA--DG 270 (311)
T ss_pred hhheecccceE---------------EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc--Cc
Confidence 66778887754 78999999999999999999999999987556688999999999999998 88
Q ss_pred ccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEe
Q 010933 438 RRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWH 478 (497)
Q Consensus 438 ~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~ 478 (497)
++ |++|+.|+. ++| ..++......+|-+.-.+++.+
T Consensus 271 ~Y-----lvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 271 EY-----LVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cE-----EEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 88 999999999 999 4555556667777777676653
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=251.85 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=242.1
Q ss_pred ccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933 87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 166 (497)
Q Consensus 87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
++..++|+||. +.|+++.| ++|.++++++|.||.+.|||..+.......
T Consensus 45 ~~~rr~LkGH~------------~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~hai----------------- 93 (343)
T KOG0286|consen 45 MRTRRTLKGHL------------NKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAI----------------- 93 (343)
T ss_pred eeeEEEecccc------------cceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeEE-----------------
Confidence 34457899999 99999999 689999999999999999998775532211
Q ss_pred cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC
Q 010933 167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS 245 (497)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~ 245 (497)
+-....|..++|+|.|+.+++| -|+...||++...
T Consensus 94 --------------------------------------------pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 94 --------------------------------------------PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred --------------------------------------------ecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 2335678999999999999999 9999999999833
Q ss_pred --ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 246 --DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
...... ...+.+|.+.+.++.|-++ ..|++++-|.++-+||+++++.+ ..|. +|.
T Consensus 130 d~~g~~~v----~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~----~~f~-------------GH~ 186 (343)
T KOG0286|consen 130 DAEGNVRV----SRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQT----QVFH-------------GHT 186 (343)
T ss_pred ccccccee----eeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEE----EEec-------------CCc
Confidence 111111 1248899999999999997 58999999999999999999765 4444 577
Q ss_pred ccccEEEEee-CCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933 324 ASISDIKFAN-DGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 401 (497)
Q Consensus 324 ~~i~~~~~s~-~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 401 (497)
+.|.+++++| +++.+++| .|+..++||++. +.++++|.+|+..+ .++.|.|+|.-+++|++|
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~ghesDI---------------Nsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDI---------------NSVRFFPSGDAFATGSDD 250 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeeccccccc---------------ceEEEccCCCeeeecCCC
Confidence 9999999999 99999997 579999999997 89999999999865 699999999999999999
Q ss_pred CcEEEEEcCCCCcceEEE--eccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEE
Q 010933 402 NLLRIFSHGVGSAGGITV--EAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLA 476 (497)
Q Consensus 402 g~i~vw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~ 476 (497)
++.++||++..+++ ..+ ..-..+|++++|+. .|++ |..|..|.. .+| ..++....+.+|+..|++|.
T Consensus 251 ~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~FS~--SGRl-----Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~ 322 (343)
T KOG0286|consen 251 ATCRLYDLRADQEL-AVYSHDSIICGITSVAFSK--SGRL-----LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG 322 (343)
T ss_pred ceeEEEeecCCcEE-eeeccCcccCCceeEEEcc--cccE-----EEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence 99999999987665 333 33456899999998 5666 888888888 999 56677788999999999999
Q ss_pred EecCCCEEEEEe-CCceEEEe
Q 010933 477 WHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 477 ~~p~~~~la~~~-~~~~~i~~ 496 (497)
.+|||.-+++|+ +..++||+
T Consensus 323 ~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 323 VSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ECCCCcEEEecchhHheeecC
Confidence 999999999999 66799995
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-37 Score=289.88 Aligned_cols=264 Identities=21% Similarity=0.313 Sum_probs=218.1
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccch--hhhhhhccc----C--CCCCCcccccccccccCcccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISR--SELEKQMDF----T--STSHPEYRYKTEFQSHEPEFDYL 103 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~--~~~~~~~~~~~~~~~h~~~~~~~ 103 (497)
...++|..|++|+.+||.|-.|..|++|.+...+...+. ..+...... . -..........++-||+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------ 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------ 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence 468899999999999999999999999999854321111 111111000 0 00011122334577888
Q ss_pred cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
++|+.+.| +|+.++|+++|+|+++|+|.+.+..
T Consensus 452 ------GPVyg~sF--sPd~rfLlScSED~svRLWsl~t~s--------------------------------------- 484 (707)
T KOG0263|consen 452 ------GPVYGCSF--SPDRRFLLSCSEDSSVRLWSLDTWS--------------------------------------- 484 (707)
T ss_pred ------Cceeeeee--cccccceeeccCCcceeeeecccce---------------------------------------
Confidence 99999999 7899999999999999999998765
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
++-.| .+|..+|+++.|+|.|-++|++ .|++.++|... ..+...+ +.+|
T Consensus 485 ---------------------~~V~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRi-------fagh 534 (707)
T KOG0263|consen 485 ---------------------CLVIY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRI-------FAGH 534 (707)
T ss_pred ---------------------eEEEe-cCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhh-------hccc
Confidence 33444 7999999999999999999999 99999999988 4455554 7899
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
-+.|.|++|+|+. +++++||.|.++|+||+.+|..+ ++|.+ |.++|.+++|||+|++|++|+
T Consensus 535 lsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V----RiF~G-------------H~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 535 LSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV----RIFTG-------------HKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred ccccceEEECCcc-cccccCCCCceEEEEEcCCCcEE----EEecC-------------CCCceEEEEEcCCCceEeecc
Confidence 9999999999999 99999999999999999999765 66655 679999999999999999996
Q ss_pred c-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 343 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 343 ~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
+ +.|.+||+.. ++++..+.+|.+.+ .++.|+.||..||+||.|++|++||+..-
T Consensus 597 ed~~I~iWDl~~-~~~v~~l~~Ht~ti---------------~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 EDGLIKIWDLAN-GSLVKQLKGHTGTI---------------YSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCcEEEEEcCC-CcchhhhhcccCce---------------eEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 5 9999999996 89999999997754 79999999999999999999999998764
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-37 Score=251.84 Aligned_cols=245 Identities=19% Similarity=0.322 Sum_probs=205.7
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|...|+.++.++||++.++++.|+.+++||+.+++. ...|.||.
T Consensus 61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-----------------------t~~f~GH~------------ 105 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-----------------------TRRFVGHT------------ 105 (315)
T ss_pred ccceEecceEEccCCceEEeccccceEEEEEecCCcE-----------------------EEEEEecC------------
Confidence 6999999999999999999999999999999998743 67799999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.+++| ++|++.+++|+.|++|++|++.+.....+.
T Consensus 106 ~dVlsva~--s~dn~qivSGSrDkTiklwnt~g~ck~t~~---------------------------------------- 143 (315)
T KOG0279|consen 106 KDVLSVAF--STDNRQIVSGSRDKTIKLWNTLGVCKYTIH---------------------------------------- 143 (315)
T ss_pred CceEEEEe--cCCCceeecCCCcceeeeeeecccEEEEEe----------------------------------------
Confidence 88999999 789999999999999999998764422110
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
-..|...|.++.|+|+ ...|+++ .|++|++||++ +-+..+ .+.+|+..+
T Consensus 144 --------------------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~-~~~l~~-------~~~gh~~~v 195 (315)
T KOG0279|consen 144 --------------------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR-NCQLRT-------TFIGHSGYV 195 (315)
T ss_pred --------------------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-Ccchhh-------ccccccccE
Confidence 0234789999999997 6788888 99999999999 444444 378999999
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 346 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i 346 (497)
+.++++||| .++++|+.||.+.+||++.++.+ ..++. ...|.+++|+|+.-+|+.+.+..|
T Consensus 196 ~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ysl~a--------------~~~v~sl~fspnrywL~~at~~sI 256 (315)
T KOG0279|consen 196 NTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YSLEA--------------FDIVNSLCFSPNRYWLCAATATSI 256 (315)
T ss_pred EEEEECCCC-CEEecCCCCceEEEEEccCCcee----EeccC--------------CCeEeeEEecCCceeEeeccCCce
Confidence 999999999 99999999999999999998754 33333 478999999999988888888889
Q ss_pred EEEecCCCCceeeeeeeccccc-----ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 347 KLWDIRMDSTPVATFKIHEHLR-----PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
+|||+.. +.++..++...... ...| .+++|++||+.|++|-.|+.|++|.+.
T Consensus 257 kIwdl~~-~~~v~~l~~d~~g~s~~~~~~~c-----------lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 257 KIWDLES-KAVVEELKLDGIGPSSKAGDPIC-----------LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeccc-hhhhhhccccccccccccCCcEE-----------EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999986 77777665332211 1222 689999999999999999999999975
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-36 Score=245.27 Aligned_cols=270 Identities=17% Similarity=0.265 Sum_probs=225.1
Q ss_pred ccC-CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 29 LQD-VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 29 ~~h-~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
++| .+.|+.+.+.|++++||+++. -.||+||+.+++. .++.++.+|.
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np---------------------~Pv~t~e~h~---------- 83 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP---------------------NPVATFEGHT---------- 83 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC---------------------CceeEEeccC----------
Confidence 455 469999999999999999986 4799999998754 4688999999
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..|.++.| ..+|+++++||+||+++|||++.-.+.
T Consensus 84 --kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~q----------------------------------------- 118 (311)
T KOG0315|consen 84 --KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQ----------------------------------------- 118 (311)
T ss_pred --CceEEEEE--eecCeEEEecCCCceEEEEeccCcccc-----------------------------------------
Confidence 88999999 689999999999999999999874432
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
+. ..|.++|+++..+|+...|++| .+|.|++||+. ...+.... .+.....|
T Consensus 119 -------------------R~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~-~~~c~~~l------iPe~~~~i 170 (311)
T KOG0315|consen 119 -------------------RN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG-ENSCTHEL------IPEDDTSI 170 (311)
T ss_pred -------------------hh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEcc-CCcccccc------CCCCCcce
Confidence 22 3677899999999999999999 99999999998 44343321 34556889
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCe
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~ 345 (497)
.++...|+| .+++.+...|+.++|++-...... .+ .+...+..|.+.+..+.+|||+++||++ +|.+
T Consensus 171 ~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s----~l-------~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 171 QSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTAS----EL-------EPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred eeEEEcCCC-cEEEEecCCccEEEEEccCCCccc----cc-------eEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence 999999999 999999999999999998743321 11 1222367788999999999999999997 5699
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
++||+.+..-+....+++|+..+ ++++||.||+||++|+.|+.+++|++..++.+ ....+|..+
T Consensus 239 v~iwn~~~~~kle~~l~gh~rWv---------------Wdc~FS~dg~YlvTassd~~~rlW~~~~~k~v-~qy~gh~K~ 302 (311)
T KOG0315|consen 239 VKIWNTDDFFKLELVLTGHQRWV---------------WDCAFSADGEYLVTASSDHTARLWDLSAGKEV-RQYQGHHKA 302 (311)
T ss_pred EEEEecCCceeeEEEeecCCceE---------------EeeeeccCccEEEecCCCCceeecccccCcee-eecCCcccc
Confidence 99999986447777889998876 89999999999999999999999999998665 778888877
Q ss_pred eeeeEe
Q 010933 426 NRKPIL 431 (497)
Q Consensus 426 v~~~~~ 431 (497)
..+++.
T Consensus 303 ~vc~~l 308 (311)
T KOG0315|consen 303 AVCVAL 308 (311)
T ss_pred cEEEEe
Confidence 666654
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.1e-36 Score=251.50 Aligned_cols=283 Identities=18% Similarity=0.302 Sum_probs=227.2
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|++.|+++.|+|+|.+||+|+.|..|.+|+..... +....+++|.
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc----------------------eN~~~lkgHs------------ 90 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC----------------------ENFWVLKGHS------------ 90 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------cceeeecccc------------
Confidence 689999999999999999999999999999976532 4466678999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|..+.| .+|+..+++++.|.+++.||+++|+...
T Consensus 91 gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~r------------------------------------------ 126 (338)
T KOG0265|consen 91 GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIR------------------------------------------ 126 (338)
T ss_pred ceeEeeee--ccCCCEEEEecCCceEEEEecccceeee------------------------------------------
Confidence 99999999 7899999999999999999999988443
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
.+ ++|..-|+++.-+.-|..|+. + .|+++++||++ .+..+++ ....-.++
T Consensus 127 ------------------k~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t--------~~~kyqlt 178 (338)
T KOG0265|consen 127 ------------------KH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKT--------FENKYQLT 178 (338)
T ss_pred ------------------hh-ccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhc--------cccceeEE
Confidence 22 789999999987777776665 6 99999999999 5656554 23456789
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i 346 (497)
++.|..++ ..+.+|+-|+.|++||++..... .++.+ |...|+.+..+|+|.++.+-+ |..+
T Consensus 179 Av~f~d~s-~qv~sggIdn~ikvWd~r~~d~~----~~lsG-------------h~DtIt~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 179 AVGFKDTS-DQVISGGIDNDIKVWDLRKNDGL----YTLSG-------------HADTITGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred EEEecccc-cceeeccccCceeeeccccCcce----EEeec-------------ccCceeeEEeccCCCccccccccceE
Confidence 99999998 89999999999999999987654 44444 678999999999999999965 5999
Q ss_pred EEEecCC---CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933 347 KLWDIRM---DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 423 (497)
Q Consensus 347 ~lwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 423 (497)
++||++. ..+++..+.+|....... ...++|+|++..+.+|+.|..+++||.... .....+
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfekn-----------lL~cswsp~~~~i~ags~dr~vyvwd~~~r-~~lykl---- 304 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEKN-----------LLKCSWSPNGTKITAGSADRFVYVWDTTSR-RILYKL---- 304 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhhh-----------cceeeccCCCCccccccccceEEEeecccc-cEEEEc----
Confidence 9999974 134577777776543221 157999999999999999999999998754 222333
Q ss_pred cceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC-CceEE
Q 010933 424 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFF 494 (497)
Q Consensus 424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i 494 (497)
.+|...|++++|+|..++|.+++. ..+|+
T Consensus 305 ------------------------------------------pGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 305 ------------------------------------------PGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ------------------------------------------CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 345557777888888888777764 34553
No 17
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-37 Score=265.10 Aligned_cols=287 Identities=16% Similarity=0.297 Sum_probs=239.8
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|++.|.-+.||++|+|||+++.|.+..||++.... .++..+++.+|.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~------------ 269 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS------------ 269 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc------------
Confidence 399999999999999999999999999999986543 256788899999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+|..+.| +||.++|++|+.|..+++||+.+|.....
T Consensus 270 ~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~----------------------------------------- 306 (519)
T KOG0293|consen 270 QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHL----------------------------------------- 306 (519)
T ss_pred CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhh-----------------------------------------
Confidence 89999999 78999999999999999999999885432
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC-CCCeE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVIT 267 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~ 267 (497)
+..+|...+.+++|.|||..+++| .|+.+..||.+ +.. ..- +++- ...|.
T Consensus 307 -------------------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~-~~~-------W~gvr~~~v~ 358 (519)
T KOG0293|consen 307 -------------------YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNI-LGN-------WEGVRDPKVH 358 (519)
T ss_pred -------------------cccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cch-hhc-------ccccccceeE
Confidence 224566789999999999999999 99999999998 332 222 3332 25689
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i 346 (497)
+++..+|| +.+++.+.|..|++|+..+.... ..... ..+|++.++|.+|+++++. .+..+
T Consensus 359 dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise--------------~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 359 DLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISE--------------EQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred EEEEcCCC-cEEEEEecccceeeechhhhhhh----ccccc--------------cCceeEEEEcCCCcEEEEEcccCee
Confidence 99999999 89999999999999998875432 23333 2579999999999999887 66999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
++||++ +.+.++.+.||..... +..-+|.. +..++++||+|+.|+||+..++.. ...+.||...
T Consensus 420 ~LWDl~-e~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl-l~~LsGHs~~ 484 (519)
T KOG0293|consen 420 HLWDLE-ENKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL-LAVLSGHSKT 484 (519)
T ss_pred EEeecc-hhhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEEEccCCce-eEeecCCcce
Confidence 999999 4899999999986431 13556654 558999999999999999999855 4999999999
Q ss_pred eeeeEeecCCCcccccccceeEeeccCc-eecCCC
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS 459 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~ 459 (497)
|+++++.|. +..+ ||++++||. +||..+
T Consensus 485 vNcVswNP~-~p~m-----~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 485 VNCVSWNPA-DPEM-----FASASDDGTIRIWGPS 513 (519)
T ss_pred eeEEecCCC-CHHH-----hhccCCCCeEEEecCC
Confidence 999999997 6666 999999999 999544
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=271.99 Aligned_cols=379 Identities=16% Similarity=0.186 Sum_probs=286.0
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|+++.|+.|.++|++|+.|-+++||+++..+. .....+.+|.
T Consensus 142 ~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---------------------~~~~~l~gHk----------- 189 (893)
T KOG0291|consen 142 LGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---------------------LFTYALNGHK----------- 189 (893)
T ss_pred cCCccceeEEEeccCCceEEeccccceEEEEEeccccc---------------------cceEeccCCC-----------
Confidence 36889999999999999999999999999999987542 2345678999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCch--heeccc---------cCCCCC-c-cccc-------cccccc-c
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ--KVKKIK---------EMDHFP-F-VSSE-------NTLLAE-K 167 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~--~~~~~~---------~~~~~~-~-~~~~-------~~~~~~-~ 167 (497)
+.|-..-| ..+...+++.+.||.+.+|..... ....-. ...... + ...+ .++..+ .
T Consensus 190 -d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~ 266 (893)
T KOG0291|consen 190 -DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSS 266 (893)
T ss_pred -cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccccc
Confidence 88999888 678888999999999999987621 100000 000000 0 0000 011111 1
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccC
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEIS 245 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~ 245 (497)
.+.+..+.+...+++.+- ..|...++.+.. ..++..+ .-...+|..++|+..|.+|+.| .=|.+.+|+.+..
T Consensus 267 kvtaa~fH~~t~~lvvgF--ssG~f~LyelP~---f~lih~L-Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 267 KVTAAAFHKGTNLLVVGF--SSGEFGLYELPD---FNLIHSL-SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ceeeeeccCCceEEEEEe--cCCeeEEEecCC---ceEEEEe-ecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 122222222233333332 255666777663 2344443 4445789999999999999997 5689999999944
Q ss_pred ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933 246 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 325 (497)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (497)
.-.++ .++|...+.+++++||| .++|+|+.||.|+|||.+++-.. .+| .+|+..
T Consensus 341 sYVlK--------QQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~----vTF-------------teHts~ 394 (893)
T KOG0291|consen 341 SYVLK--------QQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCF----VTF-------------TEHTSG 394 (893)
T ss_pred ceeee--------ccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEE----EEe-------------ccCCCc
Confidence 33333 68999999999999999 99999999999999999987554 444 447789
Q ss_pred ccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-c
Q 010933 326 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-L 403 (497)
Q Consensus 326 i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~ 403 (497)
++.+.|+..|+.+++++ ||+|+.||+.. .+..+++........ .+++..|.|..+++|+.|. .
T Consensus 395 Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Qf--------------scvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 395 VTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQF--------------SCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred eEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCceee--------------eEEEEcCCCCEEEeeccceEE
Confidence 99999999999999986 69999999986 888888887665321 5799999999999999886 6
Q ss_pred EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC--CcccccccCCCeEEEEEecC
Q 010933 404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG--HHELSYNLSSKLLHLAWHPT 480 (497)
Q Consensus 404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~--~~~~~~~~~~~i~~l~~~p~ 480 (497)
|+||++++|+. .-.+.+|.+||.+++|+| .+.. |++|+-|.. ++|..-. ...+...+...++.++|+|+
T Consensus 460 IfvWS~qTGql-lDiLsGHEgPVs~l~f~~--~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 460 IFVWSVQTGQL-LDILSGHEGPVSGLSFSP--DGSL-----LASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred EEEEEeecCee-eehhcCCCCcceeeEEcc--ccCe-----EEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence 99999999955 489999999999999999 4445 999999999 9993222 25566778889999999999
Q ss_pred CCEEEEEe-CCceEEEeC
Q 010933 481 TNLIACAN-GNSLFFHYA 497 (497)
Q Consensus 481 ~~~la~~~-~~~~~i~~~ 497 (497)
|+-||+++ ++.|.||++
T Consensus 532 G~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDI 549 (893)
T ss_pred CCeEEEEEecceEEEEEh
Confidence 99999999 557999973
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-35 Score=260.32 Aligned_cols=329 Identities=16% Similarity=0.258 Sum_probs=259.8
Q ss_pred ccCCcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCc-cccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGK-NHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
+.|..+|.+++|+|-.. .+|+|+.|-..++|++...- ... ....|+ |.. -...++.
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~--------------------~q~~lr-h~~-~~~~~s~ 232 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGS--------------------TQLVLR-HCI-REGGKSV 232 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccc--------------------hhhhhh-hhh-hhhcccC
Confidence 45899999999999665 89999999999999986411 000 000010 000 0011222
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
.....|++++| +.+|..|++|+.||.+++|+........
T Consensus 233 ~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t--------------------------------------- 271 (524)
T KOG0273|consen 233 PSNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST--------------------------------------- 271 (524)
T ss_pred CccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh---------------------------------------
Confidence 23367999999 7899999999999999999987655322
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
+..|.++|.++.|+..|++|+++ .|+++.+||.. .+...+. +.-|+.+
T Consensus 272 -----------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~-~g~~~q~-------f~~~s~~ 320 (524)
T KOG0273|consen 272 -----------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH-TGTVKQQ-------FEFHSAP 320 (524)
T ss_pred -----------------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEecc-CceEEEe-------eeeccCC
Confidence 27899999999999999999999 99999999998 4444443 5667777
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 344 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~ 344 (497)
-..+.|-.+ ..|++++.|+.|+|+-+...+.. +. +.+|.+.|+++.|+|.|.+|++++| +
T Consensus 321 ~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~----~t-------------~~GH~g~V~alk~n~tg~LLaS~SdD~ 381 (524)
T KOG0273|consen 321 ALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPV----KT-------------FIGHHGEVNALKWNPTGSLLASCSDDG 381 (524)
T ss_pred ccceEEecC--ceEeecCCCceEEEEEecCCCcc----ee-------------eecccCceEEEEECCCCceEEEecCCC
Confidence 788899877 57999999999999998765433 33 3457799999999999999999965 9
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC---------CEEEEEeCCCcEEEEEcCCCCcc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---------LHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
+++||+... ......+.+|...+ ..+.|+|+| ..|++++.|++|++||+..+..+
T Consensus 382 TlkiWs~~~-~~~~~~l~~Hskei---------------~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 382 TLKIWSMGQ-SNSVHDLQAHSKEI---------------YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred eeEeeecCC-Ccchhhhhhhccce---------------eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 999999986 78888999998754 589999864 47999999999999999999665
Q ss_pred eEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC-CCcccccccCCCeEEEEEecCCCEEEEEeCC-ce
Q 010933 416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACANGN-SL 492 (497)
Q Consensus 416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~-~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~-~~ 492 (497)
..|-.|..||.+++|+| ++++ +|+|+.||. ++|... ..+.........|..|.|+.+|+.|.++-.+ .+
T Consensus 446 -~~f~kH~~pVysvafS~--~g~y-----lAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 446 -HTLMKHQEPVYSVAFSP--NGRY-----LASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSV 517 (524)
T ss_pred -EeeccCCCceEEEEecC--CCcE-----EEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCc
Confidence 88999999999999999 8888 999999999 999333 3344455666779999999999988766644 45
Q ss_pred EE
Q 010933 493 FF 494 (497)
Q Consensus 493 ~i 494 (497)
++
T Consensus 518 cv 519 (524)
T KOG0273|consen 518 CV 519 (524)
T ss_pred eE
Confidence 54
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-34 Score=256.94 Aligned_cols=367 Identities=14% Similarity=0.195 Sum_probs=257.7
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|..+++-..|||.|-|+|+|...|.|||||....+. .+..+++.-.
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h---------------------iLKnef~v~a------------ 103 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH---------------------ILKNEFQVLA------------ 103 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce---------------------eeeeeeeecc------------
Confidence 5899999999999999999999999999999876421 2334455555
Q ss_pred cceeEEEEEecCCCCEEEEEeC--C--ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccc-cccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTN--D--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH-GYHL 184 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~--d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 184 (497)
++|.+++| +.+++.+++.++ + |.+.+||.-+.. -.. ..++..+..+.+-+...+ ++++
T Consensus 104 G~I~Di~W--d~ds~RI~avGEGrerfg~~F~~DSG~Sv--Gei-------------~GhSr~ins~~~KpsRPfRi~T~ 166 (603)
T KOG0318|consen 104 GPIKDISW--DFDSKRIAAVGEGRERFGHVFLWDSGNSV--GEI-------------TGHSRRINSVDFKPSRPFRIATG 166 (603)
T ss_pred ccccccee--CCCCcEEEEEecCccceeEEEEecCCCcc--cee-------------eccceeEeeeeccCCCceEEEec
Confidence 89999999 789999888763 3 456666653311 100 011112222222222221 2333
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
+ +++.+.+++-.. .+...++ ..|..-|+++.|+|||+.+++. .||+|.+||-.++.+...+ ..-.+|+
T Consensus 167 s--dDn~v~ffeGPP---FKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l-----~~~~aHk 235 (603)
T KOG0318|consen 167 S--DDNTVAFFEGPP---FKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL-----EDSDAHK 235 (603)
T ss_pred c--CCCeEEEeeCCC---eeeeecc-cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe-----cCCCCcc
Confidence 3 367777776542 1222333 7899999999999999999998 9999999998855444432 1245899
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 343 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 343 (497)
+.|.+++|+||+ ..|++++.|..++|||+.+.++. +.+.. ... -......+.|- ++.++...-.
T Consensus 236 GsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv----~t~~~-~~~---------v~dqqvG~lWq-kd~lItVSl~ 299 (603)
T KOG0318|consen 236 GSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLV----STWPM-GST---------VEDQQVGCLWQ-KDHLITVSLS 299 (603)
T ss_pred ccEEEEEECCCC-ceEEEecCCceEEEEEeeccceE----EEeec-CCc---------hhceEEEEEEe-CCeEEEEEcC
Confidence 999999999999 99999999999999999998765 44443 100 01223444565 4555555566
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 423 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 423 (497)
|.|.+++... ..++..+.+|...+ +++..+||+++|++|+.||.|.-|+..++..-...-++|.
T Consensus 300 G~in~ln~~d-~~~~~~i~GHnK~I---------------TaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~ 363 (603)
T KOG0318|consen 300 GTINYLNPSD-PSVLKVISGHNKSI---------------TALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT 363 (603)
T ss_pred cEEEEecccC-CChhheecccccce---------------eEEEEcCCCCEEEeeccCceEEEEecCCcccccccccccc
Confidence 9999999986 66999999999865 7999999999999999999999999877532211111121
Q ss_pred c-------------------------------------------------------------------------------
Q 010933 424 N------------------------------------------------------------------------------- 424 (497)
Q Consensus 424 ~------------------------------------------------------------------------------- 424 (497)
.
T Consensus 364 nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~ 443 (603)
T KOG0318|consen 364 NQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIG 443 (603)
T ss_pred ceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccc
Confidence 1
Q ss_pred -ceeeeEeecCCCcccccccceeEeeccCc-eecCCC----CCcccccccCCCeEEEEEecCCCEEEEEeC-CceEEEe
Q 010933 425 -ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS----GHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFHY 496 (497)
Q Consensus 425 -~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~----~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i~~ 496 (497)
...+++++| ++.. +|.|+.|++ +++... ........|..+|+++++|||+.+||++.. ..+.+|.
T Consensus 444 y~~s~vAv~~--~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 444 YESSAVAVSP--DGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred cccceEEEcC--CCCE-----EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 122333444 3444 888999999 888222 223357789999999999999999999994 4477775
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-35 Score=261.46 Aligned_cols=280 Identities=17% Similarity=0.305 Sum_probs=231.0
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
....|++++|+.+|..||+|+.||.++||+..+. .+.+|..|. +
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~------------------------l~~tl~~Hk------------g 277 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN------------------------LISTLGQHK------------G 277 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCch------------------------hhhhhhccC------------C
Confidence 4578999999999999999999999999998764 367788899 9
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
+|.++.| +.+|.+|++++.|+++.+||..++.++....+...+ .+...+..+..+..+. .++
T Consensus 278 PI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------~lDVdW~~~~~F~ts~---td~ 339 (524)
T KOG0273|consen 278 PIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------ALDVDWQSNDEFATSS---TDG 339 (524)
T ss_pred ceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-------------ccceEEecCceEeecC---CCc
Confidence 9999999 789999999999999999999988876654333221 1222222222222222 377
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.++++.+.. ..|+.++ .+|.+.|.++.|+|.|.+|+++ +|++++||++. ...+.. .+..|+..|+.+
T Consensus 340 ~i~V~kv~~---~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~-~~~~~~-------~l~~Hskei~t~ 407 (524)
T KOG0273|consen 340 CIHVCKVGE---DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG-QSNSVH-------DLQAHSKEIYTI 407 (524)
T ss_pred eEEEEEecC---CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecC-CCcchh-------hhhhhccceeeE
Confidence 899998884 4688887 7899999999999999999999 99999999987 444444 378999999999
Q ss_pred EEeCCCC--------cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 270 EFHPIYC--------NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 270 ~~~~~~~--------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
.|+|+|+ ..+++++.|+.|++||+..+..+ ..|.. |..+|++++|+|+|+|+|+|
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----~~f~k-------------H~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----HTLMK-------------HQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----Eeecc-------------CCCceEEEEecCCCcEEEec
Confidence 9999753 46999999999999999998765 44444 56899999999999999999
Q ss_pred e-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 342 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 342 ~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
+ ||.|.+|+.+. ++.++.+.+.... ..++|+.+|.+|..+-.|+.+++.|++
T Consensus 471 s~dg~V~iws~~~-~~l~~s~~~~~~I----------------fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 471 SLDGCVHIWSTKT-GKLVKSYQGTGGI----------------FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCCeeEeccccc-hheeEeecCCCeE----------------EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 6 59999999997 8999888876652 589999999999999999999999875
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.1e-37 Score=265.15 Aligned_cols=278 Identities=20% Similarity=0.318 Sum_probs=239.7
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
..+|..+.|.|+|+.|++|+..|.+.+|+..+ +.+...+++|+ .+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQaHD------------s~ 140 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQAHD------------SP 140 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhhhc------------cc
Confidence 45899999999999999999999999999754 35566788999 99
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
|.++.| ++++.++++|..+|.|++|+..-..++.+
T Consensus 141 Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~~------------------------------------------- 175 (464)
T KOG0284|consen 141 VRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKII------------------------------------------- 175 (464)
T ss_pred ceeEEE--ccCCCEEEEcCCCceEEecccchhhhHHh-------------------------------------------
Confidence 999999 68999999999999999999876553332
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
...|...|.+++|+|+...|+++ +||+|+|||.....+... +.+|.-.|.+++
T Consensus 176 ------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--------L~GHgwdVksvd 229 (464)
T KOG0284|consen 176 ------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--------LRGHGWDVKSVD 229 (464)
T ss_pred ------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--------eccCCCCcceec
Confidence 13555899999999999999999 999999999884443322 689999999999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw 349 (497)
|+|.. .++++++.|..|++||.+++..+ .. +.+|+..|..+.|+|++++|++++ |..++++
T Consensus 230 WHP~k-gLiasgskDnlVKlWDprSg~cl----~t-------------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 230 WHPTK-GLIASGSKDNLVKLWDPRSGSCL----AT-------------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF 291 (464)
T ss_pred cCCcc-ceeEEccCCceeEeecCCCcchh----hh-------------hhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence 99998 99999999999999999999765 22 234678899999999999999985 5999999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 428 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 428 (497)
|+++ .+.+.++++|+..+ +++.|+| ...++.+|+.||.|..|.+...+.+...-.+|...|++
T Consensus 292 DiR~-mkEl~~~r~Hkkdv---------------~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 292 DIRT-MKELFTYRGHKKDV---------------TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS 355 (464)
T ss_pred ehhH-hHHHHHhhcchhhh---------------eeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence 9996 88999999999865 7999999 45688899999999999998666666777899999999
Q ss_pred eEeecCCCcccccccceeEeeccCc-eec
Q 010933 429 PILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+++.| -|.+ ||+|+.|.. +.|
T Consensus 356 l~~hP--lGhi-----l~tgsnd~t~rfw 377 (464)
T KOG0284|consen 356 LAYHP--LGHI-----LATGSNDRTVRFW 377 (464)
T ss_pred eeccc--ccee-----EeecCCCcceeee
Confidence 99999 4555 999999999 999
No 23
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-36 Score=240.32 Aligned_cols=281 Identities=20% Similarity=0.343 Sum_probs=232.7
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|.++|.++.|+-||+|.++++.|.+|++|+...+ .+++++.+|.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-----------------------~liktYsghG------------ 59 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-----------------------ALIKTYSGHG------------ 59 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccc-----------------------ceeeeecCCC------------
Confidence 37899999999999999999999999999998776 4589999998
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|..++- +.|+..|++++.|+.+.+||+.+|++.+
T Consensus 60 ~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~R------------------------------------------ 95 (307)
T KOG0316|consen 60 HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDR------------------------------------------ 95 (307)
T ss_pred ceeeeccc--cccccccccCCCCceEEEEEcccCeeee------------------------------------------
Confidence 67999998 5788999999999999999999988543
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC-ceeeEEeecCCCccCCCCCCeE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
.+ .+|...|+.++|+.+...+++| .|..+++||.++. .+++++ +....+.|.
T Consensus 96 ------------------r~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi-------ldea~D~V~ 149 (307)
T KOG0316|consen 96 ------------------RF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI-------LDEAKDGVS 149 (307)
T ss_pred ------------------ec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch-------hhhhcCcee
Confidence 22 8999999999999999999999 9999999999832 234444 666778899
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i 346 (497)
++.... ..|++|+.||++|.||+|.|++. ..+-+ .+|++++|+++++..++++ ++.+
T Consensus 150 Si~v~~---heIvaGS~DGtvRtydiR~G~l~----sDy~g---------------~pit~vs~s~d~nc~La~~l~stl 207 (307)
T KOG0316|consen 150 SIDVAE---HEIVAGSVDGTVRTYDIRKGTLS----SDYFG---------------HPITSVSFSKDGNCSLASSLDSTL 207 (307)
T ss_pred EEEecc---cEEEeeccCCcEEEEEeecceee----hhhcC---------------CcceeEEecCCCCEEEEeecccee
Confidence 998875 57999999999999999998764 22223 5799999999999988885 5999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 426 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 426 (497)
++.|-.+ +++++.+++|...-.+ ...++.....++++|++||.+++||+.....+ ..+..+...
T Consensus 208 rLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-sk~~~~~~v- 271 (307)
T KOG0316|consen 208 RLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI-SKLSVVSTV- 271 (307)
T ss_pred eecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEeccceee-eeeccCCce-
Confidence 9999987 9999999999875322 46788888899999999999999999876332 222222111
Q ss_pred eeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEeC
Q 010933 427 RKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHYA 497 (497)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~~ 497 (497)
.|+++++||....+.++...+.+.|.+
T Consensus 272 --------------------------------------------~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 272 --------------------------------------------IVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred --------------------------------------------eEEeeecccCccceeEecCCceeceee
Confidence 367888899888888888888777753
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.9e-36 Score=253.56 Aligned_cols=253 Identities=19% Similarity=0.322 Sum_probs=220.3
Q ss_pred ccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccc
Q 010933 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKT 91 (497)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (497)
.+||...+.. +|.+.|.|+++.|..+++++|+.|++|+|||+.++++ ..
T Consensus 139 apwKl~rVi~--------gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----------------------kl 187 (460)
T KOG0285|consen 139 APWKLYRVIS--------GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----------------------KL 187 (460)
T ss_pred Ccceehhhhh--------hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------------EE
Confidence 3677777654 4999999999999999999999999999999999865 78
Q ss_pred cccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933 92 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 171 (497)
Q Consensus 92 ~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (497)
++.||- ..|..+++ ++--.|+++++.|+.|+.||++..+.++.
T Consensus 188 tltGhi------------~~vr~vav--S~rHpYlFs~gedk~VKCwDLe~nkvIR~----------------------- 230 (460)
T KOG0285|consen 188 TLTGHI------------ETVRGVAV--SKRHPYLFSAGEDKQVKCWDLEYNKVIRH----------------------- 230 (460)
T ss_pred eecchh------------heeeeeee--cccCceEEEecCCCeeEEEechhhhhHHH-----------------------
Confidence 899999 88999999 56778999999999999999998875442
Q ss_pred cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeE
Q 010933 172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 250 (497)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 250 (497)
| .+|-+.|++++.+|.-..|++| .|..+++||++ .+..+.
T Consensus 231 -------------------------------------Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~~V~ 271 (460)
T KOG0285|consen 231 -------------------------------------Y-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRASVH 271 (460)
T ss_pred -------------------------------------h-ccccceeEEEeccccceeEEecCCcceEEEeeec-ccceEE
Confidence 3 7999999999999999999999 99999999999 555555
Q ss_pred EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933 251 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
+ +.+|..+|..+.+.|.. ..+++||.|++|++||++.|+.. ..+ ..|...+.+++
T Consensus 272 ~-------l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----~tl-------------t~hkksvral~ 326 (460)
T KOG0285|consen 272 V-------LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----ITL-------------THHKKSVRALC 326 (460)
T ss_pred E-------ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----Eee-------------ecccceeeEEe
Confidence 4 88999999999999988 78999999999999999998643 233 33567899999
Q ss_pred EeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 331 FANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 331 ~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
.+|....+|+++-..|+-|++.. +..+..+.+|...+ ..++...|+ ++++|++.|.+..||.+
T Consensus 327 lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~ii---------------ntl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 327 LHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAII---------------NTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred cCCchhhhhccCCccceeccCCc-cchhhcccccccee---------------eeeeeccCc-eEEEcCCceEEEEEecC
Confidence 99999899998888999999986 88888899998764 578877665 78899999999999999
Q ss_pred CCC
Q 010933 411 VGS 413 (497)
Q Consensus 411 ~~~ 413 (497)
++.
T Consensus 390 sg~ 392 (460)
T KOG0285|consen 390 SGH 392 (460)
T ss_pred cCc
Confidence 873
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.2e-37 Score=265.62 Aligned_cols=275 Identities=19% Similarity=0.276 Sum_probs=232.0
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.+|..|+| .|+|+.|++|+..|.+.+|+......+.
T Consensus 96 kc~V~~v~W--tPeGRRLltgs~SGEFtLWNg~~fnFEt----------------------------------------- 132 (464)
T KOG0284|consen 96 KCPVNVVRW--TPEGRRLLTGSQSGEFTLWNGTSFNFET----------------------------------------- 132 (464)
T ss_pred ccceeeEEE--cCCCceeEeecccccEEEecCceeeHHH-----------------------------------------
Confidence 378999999 7899999999999999999875433211
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccC-CCCCCe
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD-DLTEVI 266 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i 266 (497)
++..|.++|.++.|+++|.++++| .+|.|++|+... ..++. .. .|...|
T Consensus 133 --------------------ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~-------~~ahh~eaI 183 (464)
T KOG0284|consen 133 --------------------ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKI-------IQAHHAEAI 183 (464)
T ss_pred --------------------HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHH-------hhHhhhhhh
Confidence 137999999999999999999999 999999999872 22322 33 455999
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-Ce
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~ 345 (497)
++++|+|+. ..|++++.||+|+|||....+.. +++.+ |.-.+.++.|+|...+|++|++ ..
T Consensus 184 RdlafSpnD-skF~t~SdDg~ikiWdf~~~kee----~vL~G-------------HgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 184 RDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE----RVLRG-------------HGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred heeccCCCC-ceeEEecCCCeEEEEeccCCchh----heecc-------------CCCCcceeccCCccceeEEccCCce
Confidence 999999988 99999999999999999876433 44444 5678999999999999999864 99
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
|++||.++ +.++.++.+|...| ..+.|+|++++|+++|.|..++++|+++.+++ ..+++|+..
T Consensus 246 VKlWDprS-g~cl~tlh~HKntV---------------l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl-~~~r~Hkkd 308 (464)
T KOG0284|consen 246 VKLWDPRS-GSCLATLHGHKNTV---------------LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL-FTYRGHKKD 308 (464)
T ss_pred eEeecCCC-cchhhhhhhccceE---------------EEEEEcCCCCeeEEccCCceEEEEehhHhHHH-HHhhcchhh
Confidence 99999997 99999999999875 79999999999999999999999999977555 899999999
Q ss_pred eeeeEeecCCCcccccccceeEeeccCc-eecCCC---CCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS---GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~---~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
++++.++|. ...+ |.+|+.||. ..|..+ .....-..|...|.+|+|||=|.+||+|+ +..+.+|.
T Consensus 309 v~~~~WhP~-~~~l-----ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 309 VTSLTWHPL-NESL-----FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred heeeccccc-cccc-----eeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999999997 4444 899999999 777222 23334568999999999999999999999 55688885
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-36 Score=254.12 Aligned_cols=281 Identities=17% Similarity=0.223 Sum_probs=244.6
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|..+|+.+-|+|+-..++++++|++|++||..+++. ...++||+
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-----------------------e~~LrGHt----------- 150 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-----------------------ERSLRGHT----------- 150 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhh-----------------------hhhhhccc-----------
Confidence 46889999999999999999999999999999998843 78899999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|.+++| +..|+++++++.|=.+++||..+..
T Consensus 151 -~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~-------------------------------------------- 183 (406)
T KOG0295|consen 151 -DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF-------------------------------------------- 183 (406)
T ss_pred -cceeEEEE--ecCccEEEecCCccchhheeHHHHH--------------------------------------------
Confidence 88999999 6789999999999999999998642
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
+|++.. .+|...|.++.|-|.|.+++++ .|.+|+.|++. .+.++++ +.+|...+.
T Consensus 184 ---------------~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t-------~~~h~ewvr 239 (406)
T KOG0295|consen 184 ---------------RCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKT-------FPGHSEWVR 239 (406)
T ss_pred ---------------HHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEe-------ccCchHhEE
Confidence 133333 6899999999999999999999 99999999999 6777776 899999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-------------
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND------------- 334 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------------- 334 (497)
.++.+.|| .++|+++.|.++++|-+.+++.. ..+ .+|.-++-+++|-|.
T Consensus 240 ~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----~~l-------------R~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 240 MVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----AEL-------------REHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred EEEecCCe-eEEEecCCCceEEEEEeccchhh----hhh-------------hccccceEEEEecccccCcchhhccCCC
Confidence 99999999 99999999999999999987533 233 335567788887653
Q ss_pred --CCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 335 --GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 335 --g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
+.++++++ |++|++||+.+ +.++.++.+|.+.+ .+++|+|.|+||+++.+|+++++||+++
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred CCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 25778875 69999999998 99999999999987 7999999999999999999999999999
Q ss_pred CCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 412 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
++.. ..+++|..-++++.|.... .+ +++|+-|.. ++|
T Consensus 366 ~~cm-k~~~ah~hfvt~lDfh~~~--p~-----VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 366 LQCM-KTLEAHEHFVTSLDFHKTA--PY-----VVTGSVDQTVKVW 403 (406)
T ss_pred ceee-eccCCCcceeEEEecCCCC--ce-----EEeccccceeeee
Confidence 8655 8899999999999998743 34 899999988 888
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=264.16 Aligned_cols=373 Identities=13% Similarity=0.156 Sum_probs=287.7
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
-..+|.|+.|||||+++|.|.. +.+.||...+... ...+.+....++.+|- .
T Consensus 95 fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~---------------~~~~pFvl~r~~~g~f------------d 146 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIK---------------NEFNPFVLHRTYLGHF------------D 146 (893)
T ss_pred ecCccceEEECCCCcEEEEEec-ceeEEEecCcchh---------------cccCcceEeeeecCCc------------c
Confidence 3689999999999999999875 5899999755321 1245667778888998 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.++.| +.|.++|+++|.|.++++|+++..+-.... ....+.+.++.+.+..+..-+.+.+. +|
T Consensus 147 di~si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~-----------~l~gHkd~VvacfF~~~~~~l~tvsk--dG 211 (893)
T KOG0291|consen 147 DITSIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTY-----------ALNGHKDYVVACFFGANSLDLYTVSK--DG 211 (893)
T ss_pred ceeEEEe--ccCCceEEeccccceEEEEEeccccccceE-----------eccCCCcceEEEEeccCcceEEEEec--Cc
Confidence 8999999 689999999999999999999876532111 11123344555555555555555554 88
Q ss_pred ceEEEeecCC------------------------c-----cce-eeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 010933 191 ATKIANVGNS------------------------V-----HAR-CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL 239 (497)
Q Consensus 191 ~~~~~~~~~~------------------------~-----~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~i 239 (497)
.+.+|..+.. . ... ..+.++......+++.+|++..+.|++| ..|...+
T Consensus 212 ~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~L 291 (893)
T KOG0291|consen 212 ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGL 291 (893)
T ss_pred eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEE
Confidence 8899987611 0 000 1123334555789999999999999999 9999999
Q ss_pred EeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-CeEEEEEccCCcccccccceecccccccCCccc
Q 010933 240 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDMRQSALCDHSARILRDAAESHGSKSF 318 (497)
Q Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (497)
|++. ...+++. +.-...+|..++|+..| ..||.|+.. |.+.||+.++...+ ++.
T Consensus 292 yelP-~f~lih~-------LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYV------lKQ---------- 346 (893)
T KOG0291|consen 292 YELP-DFNLIHS-------LSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYV------LKQ---------- 346 (893)
T ss_pred EecC-CceEEEE-------eecccceeeEEEecccC-CEEEEcCCccceEEEEEeecccee------eec----------
Confidence 9998 5556654 44456789999999999 999998775 89999999876533 322
Q ss_pred cccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 010933 319 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 397 (497)
Q Consensus 319 ~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 397 (497)
++|...+++++++|||+++|+|. ||.|+|||.+. +-++.++..|...+ +.+.|+..|+.|++
T Consensus 347 -QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~V---------------t~v~f~~~g~~lls 409 (893)
T KOG0291|consen 347 -QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGV---------------TAVQFTARGNVLLS 409 (893)
T ss_pred -cccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCce---------------EEEEEEecCCEEEE
Confidence 45778899999999999999985 59999999986 88999999999876 79999999999999
Q ss_pred EeCCCcEEEEEcCCCCcceEEEec-cCcceeeeEeecCCCcccccccceeEeeccCc--eec--CCCCCcccccccCCCe
Q 010933 398 GSYSNLLRIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYNLSSKL 472 (497)
Q Consensus 398 ~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~--~iw--~~~~~~~~~~~~~~~i 472 (497)
.+-||+|+.||+.....- .++.. ..-+..+++.-| .|.. ++.|+.|.- .+| .+++++-.+.+|+++|
T Consensus 410 sSLDGtVRAwDlkRYrNf-RTft~P~p~QfscvavD~--sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNF-RTFTSPEPIQFSCVAVDP--SGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred eecCCeEEeeeeccccee-eeecCCCceeeeEEEEcC--CCCE-----EEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 999999999999876432 33332 223334445544 3444 677777776 888 7888888899999999
Q ss_pred EEEEEecCCCEEEEEe-CCceEEEe
Q 010933 473 LHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 473 ~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
.+++|+|++..||+++ +..+.+|+
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEE
Confidence 9999999999999999 77799997
No 28
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-35 Score=270.51 Aligned_cols=263 Identities=13% Similarity=0.077 Sum_probs=215.2
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
++.+++|+.+ +.+|++++. ...+.+..|.|.+++++.| ..|.+.+||+. ....+.+ .+.|++.|.
T Consensus 393 ~~SikiWn~~---t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla-S~~l~Et-------i~AHdgaIW 458 (888)
T KOG0306|consen 393 GESIKIWNRD---TLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLA-SASLVET-------IRAHDGAIW 458 (888)
T ss_pred CCcEEEEEcc---CcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEee-hhhhhhh-------hhcccccee
Confidence 4689999998 457888872 2388999999999999999 99999999998 4445543 578999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccc-cccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCe
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 345 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~ 345 (497)
+++.+|++ ..+++|+.|.+|++||+.--.... ...+.+..+.. ..-.....|.|+.+||||++|+++ -|++
T Consensus 459 si~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~------rtLel~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 459 SISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT------RTLELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred eeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccc------eEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence 99999999 999999999999999985321100 00011111000 011224679999999999999998 5799
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
+++|-+.+ -+....+-||.-++ +++..|||+++++|||.|.+|+||-++-|.. .+.+-+|.+.
T Consensus 532 VkVyflDt-lKFflsLYGHkLPV---------------~smDIS~DSklivTgSADKnVKiWGLdFGDC-HKS~fAHdDS 594 (888)
T KOG0306|consen 532 VKVYFLDT-LKFFLSLYGHKLPV---------------LSMDISPDSKLIVTGSADKNVKIWGLDFGDC-HKSFFAHDDS 594 (888)
T ss_pred EEEEEecc-eeeeeeecccccce---------------eEEeccCCcCeEEeccCCCceEEeccccchh-hhhhhcccCc
Confidence 99999987 88888999999876 7999999999999999999999999998855 4899999999
Q ss_pred eeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
|.++.|.| .... |.++|.|+. +-| ..=+....+.+|...|.+++.+|+|.++++++ +.++.+|.
T Consensus 595 vm~V~F~P--~~~~-----FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 595 VMSVQFLP--KTHL-----FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred eeEEEEcc--ccee-----EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999 4555 899999999 999 33356667889999999999999999999999 56799986
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-34 Score=265.55 Aligned_cols=374 Identities=15% Similarity=0.153 Sum_probs=279.6
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~ 108 (497)
+..+.|++++.+||+++|++++..+-+++|++.+++ ++++++. |+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk-----------------------~irswKa~He----------- 105 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGK-----------------------LIRSWKAIHE----------- 105 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccch-----------------------HhHhHhhccC-----------
Confidence 346789999999999999999999999999999874 4777777 88
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCc--cccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF--AHGYHLEW 186 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 186 (497)
++|.-++| +|.+..+++|+.|+.+++||+..+.+...... +.|.+....+.+.. ..++.+..
T Consensus 106 -~Pvi~ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-------------~gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 106 -APVITMAF--DPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-------------HGGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred -CCeEEEEE--cCCCceEEeccccceEEEEEeeCCEEEEEecC-------------CCceEEEEEeCCccchhheeecCC
Confidence 99999999 67889999999999999999998887654332 22333333333332 23444443
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce------------------
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ------------------ 247 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~------------------ 247 (497)
++.+++|++..... |+.+. ..|.+.|+++++.+++..++++ .|..+.+||+...+.
T Consensus 170 --D~~v~vwnl~~~~t--cl~~~-~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~ 244 (775)
T KOG0319|consen 170 --DGTVRVWNLNDKRT--CLHTM-ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE 244 (775)
T ss_pred --CceEEEEEcccCch--HHHHH-HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEech
Confidence 88999999986543 55554 7999999999999999888887 999999998753100
Q ss_pred ----------------eeEEee----------------------------------------------------------
Q 010933 248 ----------------CFNIVD---------------------------------------------------------- 253 (497)
Q Consensus 248 ----------------~~~~~~---------------------------------------------------------- 253 (497)
..+.++
T Consensus 245 ~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd 324 (775)
T KOG0319|consen 245 ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND 324 (775)
T ss_pred hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch
Confidence 000000
Q ss_pred ----------------------------cCC---CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccc
Q 010933 254 ----------------------------MKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 302 (497)
Q Consensus 254 ----------------------------~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 302 (497)
.+. .-+.+|+..|.++....+| -+|++|+.|..+++|.++++.....
T Consensus 325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~- 402 (775)
T KOG0319|consen 325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSL- 402 (775)
T ss_pred hheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhh-
Confidence 000 0134566667777755555 6778888888888887744322111
Q ss_pred cceecccccccCCccccccccccccEEEEeeCC-CEEEEE-ecCeEEEEecCCCCce-----ee----eeeecccccccc
Q 010933 303 ARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DYMNLKLWDIRMDSTP-----VA----TFKIHEHLRPKL 371 (497)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~i~lwd~~~~~~~-----~~----~~~~~~~~~~~~ 371 (497)
......+|...|.+++++..+ .+|+++ +|.++++|++.. .+. +. +...|...
T Consensus 403 ------------~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~~~~t~~aHdKd---- 465 (775)
T KOG0319|consen 403 ------------CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLTCRYTERAHDKD---- 465 (775)
T ss_pred ------------hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccceehhhHHHHhhccc----
Confidence 111235788999999998766 466766 569999999974 211 11 22344443
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeecc
Q 010933 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 451 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d 451 (497)
|++++++|+.+++||||.|.+.+||+++.. .+..++.+|...++++.|++ ..+. +++++.|
T Consensus 466 -----------IN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~--~dq~-----laT~SgD 526 (775)
T KOG0319|consen 466 -----------INCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSK--NDQL-----LATCSGD 526 (775)
T ss_pred -----------ccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEecc--ccce-----eEeccCC
Confidence 369999999999999999999999999965 66699999999999999999 5566 9999999
Q ss_pred Cc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933 452 QA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 496 (497)
Q Consensus 452 ~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~ 496 (497)
+. +|| ....-..++.+|+..|..++|-.+|+.|++++.+| +++|+
T Consensus 527 ~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 527 KTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred ceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 99 999 34445667889999999999999999999988666 89997
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-34 Score=260.77 Aligned_cols=266 Identities=17% Similarity=0.230 Sum_probs=227.7
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.+++.|.++.|+|...+++++-.+|.|.||+.++.. .++.++-.+
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-----------------------mVksfeV~~------------ 55 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-----------------------MVKSFEVSE------------ 55 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccce-----------------------eeeeeeecc------------
Confidence 488999999999999999999999999999998863 367777666
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
-+|.+..|. ....++++|+.|..|++|+..+++..
T Consensus 56 ~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt~ekV------------------------------------------- 90 (794)
T KOG0276|consen 56 VPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNTGEKV------------------------------------------- 90 (794)
T ss_pred cchhhheee--eccceEEEecCCceEEEEecccceee-------------------------------------------
Confidence 889999996 44569999999999999999887633
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+.| ..|.+.|.+++.+|.-.+++++ +|-+|++||.+..=.+.++ +++|+..|++
T Consensus 91 -----------------~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt-------feGH~HyVMq 145 (794)
T KOG0276|consen 91 -----------------KTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT-------FEGHEHYVMQ 145 (794)
T ss_pred -----------------EEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE-------EcCcceEEEE
Confidence 333 8999999999999999999999 9999999999955455554 8999999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC--CEEEEEec-Ce
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDY-MN 345 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~-~~ 345 (497)
++|+|...+.+|+++-|++|++|.+.+.... . ++.+|...|+++.+-+.| .||++|+| ..
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----f-------------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPN----F-------------TLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCc----e-------------eeeccccCcceEEeccCCCcceEEecCCCce
Confidence 9999988899999999999999999765322 2 245678999999998755 69999865 99
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
++|||.++ ..+++++.+|...+ ..+.|+|.=..+++||+||+++||+-.+-+.+ .++...-..
T Consensus 209 iKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE-~tLn~gleR 271 (794)
T KOG0276|consen 209 IKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSKTYKLE-KTLNYGLER 271 (794)
T ss_pred EEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCcceehh-hhhhcCCce
Confidence 99999997 99999999999876 58999999999999999999999998887443 677777777
Q ss_pred eeeeEeecC
Q 010933 426 NRKPILQAA 434 (497)
Q Consensus 426 v~~~~~~~~ 434 (497)
+++++..+.
T Consensus 272 vW~I~~~k~ 280 (794)
T KOG0276|consen 272 VWCIAAHKG 280 (794)
T ss_pred EEEEeecCC
Confidence 888876553
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.9e-34 Score=273.36 Aligned_cols=288 Identities=23% Similarity=0.413 Sum_probs=235.9
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
|...|.|+.|+|+|+++++++.|+.+++|+..+.+. .....+.+|. .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------~ 204 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------R 204 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------c
Confidence 478999999999999999999999999999966531 2356668898 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|++++| +++++++++++.|++|++||+....
T Consensus 205 ~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~---------------------------------------------- 236 (456)
T KOG0266|consen 205 GVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDG---------------------------------------------- 236 (456)
T ss_pred ceeeeEE--CCCCcEEEEecCCceEEEeeccCCC----------------------------------------------
Confidence 8999999 7899999999999999999994321
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.+++++ .+|...|++++|+|+++.+++| .|++|++||++ .+.+... +.+|...|.++
T Consensus 237 -------------~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~-------l~~hs~~is~~ 294 (456)
T KOG0266|consen 237 -------------RNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRK-------LKGHSDGISGL 294 (456)
T ss_pred -------------eEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEe-------eeccCCceEEE
Confidence 244444 7999999999999999999999 99999999999 5666665 88999999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~l 348 (497)
+|++++ ++|++++.|+.|++||+.++... ..+.+..+. ... .++++.|+|++++++++.+ +.+++
T Consensus 295 ~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~----------~~~-~~~~~~fsp~~~~ll~~~~d~~~~~ 360 (456)
T KOG0266|consen 295 AFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAE----------NSA-PVTSVQFSPNGKYLLSASLDRTLKL 360 (456)
T ss_pred EECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCC----------CCC-ceeEEEECCCCcEEEEecCCCeEEE
Confidence 999999 99999999999999999998631 002333211 011 5899999999999999865 89999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc-Cccee
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENR 427 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~ 427 (497)
||+.. +.....+.+|...+ . ++ .+...++.++++++|+.|+.|++|+..++.. ...+.+| ...+.
T Consensus 361 w~l~~-~~~~~~~~~~~~~~--~-------~~---~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~-~~~l~~h~~~~~~ 426 (456)
T KOG0266|consen 361 WDLRS-GKSVGTYTGHSNLV--R-------CI---FSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI-LQRLEGHSKAAVS 426 (456)
T ss_pred EEccC-CcceeeecccCCcc--e-------eE---ecccccCCCCeEEEEeCCceEEEEeCCccch-hhhhcCCCCCcee
Confidence 99986 88899999888742 1 22 3566688999999999999999999999644 4889999 88888
Q ss_pred eeEeecCCCcccccccceeEee--ccCc-eec
Q 010933 428 KPILQAAPRARRSSLSNLTRGL--YRQA-HEN 456 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~--~d~~-~iw 456 (497)
.+.+.+. ... +++++ .|+. .+|
T Consensus 427 ~~~~~~~--~~~-----~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 427 DLSSHPT--ENL-----IASSSFEGDGLIRLW 451 (456)
T ss_pred ccccCCC--cCe-----eeecCcCCCceEEEe
Confidence 8888884 222 56666 5565 777
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=228.57 Aligned_cols=285 Identities=15% Similarity=0.238 Sum_probs=224.4
Q ss_pred cccccccCcccccccccccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 168 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
+..+++|. +++..++|+ |. |..|+++|.|+.|++|+...+..
T Consensus 7 ~~~~~gh~------------~r~W~~awh--p~~g~ilAscg~Dk~vriw~~~~~~s----------------------- 49 (312)
T KOG0645|consen 7 EQKLSGHK------------DRVWSVAWH--PGKGVILASCGTDKAVRIWSTSSGDS----------------------- 49 (312)
T ss_pred EEeecCCC------------CcEEEEEec--cCCceEEEeecCCceEEEEecCCCCc-----------------------
Confidence 56678898 899999996 44 77899999999999999875331
Q ss_pred ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC-c
Q 010933 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-D 246 (497)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-~ 246 (497)
..|...+-.+|+..|.+++|+|.|++|++| .|.++.||.-... -
T Consensus 50 ----------------------------------~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 50 ----------------------------------WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred ----------------------------------EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 123333336899999999999999999999 9999999976521 1
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
++.. ++++|+..|.+++|+++| ++||+++.|+.|-||.+..+... ... ..+.+|...|
T Consensus 96 ecv~-------~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf----ec~----------aVL~~HtqDV 153 (312)
T KOG0645|consen 96 ECVA-------TLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF----ECI----------AVLQEHTQDV 153 (312)
T ss_pred eEEe-------eeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE----EEE----------eeeccccccc
Confidence 3333 489999999999999999 99999999999999999865432 111 1245577889
Q ss_pred cEEEEeeCCCEEEEEec-CeEEEEecCC--CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933 327 SDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 403 (497)
Q Consensus 327 ~~~~~s~~g~~l~~~~~-~~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 403 (497)
..+.|+|...+|+++++ ++|++|+-.. +-.+.+++.+|...+ ++++|++.|..|++++.|++
T Consensus 154 K~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV---------------W~~~F~~~G~rl~s~sdD~t 218 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV---------------WSLAFDNIGSRLVSCSDDGT 218 (312)
T ss_pred cEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE---------------EEEEecCCCceEEEecCCcc
Confidence 99999999999999875 9999998652 246889999998765 79999999999999999999
Q ss_pred EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC----CCcc-----cccccCCCeE
Q 010933 404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS----GHHE-----LSYNLSSKLL 473 (497)
Q Consensus 404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~----~~~~-----~~~~~~~~i~ 473 (497)
++||...+. .-..|..++..+.+-. +.+|+++.|+. +++... +... ....|...|+
T Consensus 219 v~Iw~~~~~-----~~~~~sr~~Y~v~W~~---------~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN 284 (312)
T KOG0645|consen 219 VSIWRLYTD-----LSGMHSRALYDVPWDN---------GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN 284 (312)
T ss_pred eEeeeeccC-----cchhcccceEeeeecc---------cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence 999996532 1224667777777761 23899999999 888222 2221 2346888999
Q ss_pred EEEEecC-CCEEEEEeCCc-eEEEe
Q 010933 474 HLAWHPT-TNLIACANGNS-LFFHY 496 (497)
Q Consensus 474 ~l~~~p~-~~~la~~~~~~-~~i~~ 496 (497)
+++|+|. .+.|+++++|+ +.+|.
T Consensus 285 sV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 285 SVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEEEcCCCCCceeecCCCceEEEEE
Confidence 9999995 67788888666 77775
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=228.88 Aligned_cols=287 Identities=16% Similarity=0.281 Sum_probs=224.4
Q ss_pred ccCCcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccc-cccCccccccccc
Q 010933 29 LQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSL 106 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~ 106 (497)
.+|++.|..++|+|- |..||+|+.|+.|+||+...+. .+.+...+ .+|+
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk--------- 61 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK--------- 61 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch---------
Confidence 358999999999998 8999999999999999987532 34555555 4687
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..|.+++| +|.|++|+++|.|.++.||.-..++.
T Consensus 62 ---rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~ef----------------------------------------- 95 (312)
T KOG0645|consen 62 ---RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEF----------------------------------------- 95 (312)
T ss_pred ---heeeeeee--cCCCcEEEEeeccceEEEeecCCCce-----------------------------------------
Confidence 88999999 78999999999999999998765552
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
+|+.++ .+|...|.+++|+++|++||++ .|+.|-||.+. .+..+... ..+++|...
T Consensus 96 -----------------ecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~----aVL~~HtqD 152 (312)
T KOG0645|consen 96 -----------------ECVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECI----AVLQEHTQD 152 (312)
T ss_pred -----------------eEEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEE----eeecccccc
Confidence 355554 8999999999999999999999 99999999988 33322221 238899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 344 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~ 344 (497)
|..+.|+|.. .+|++++.|++|++|+-..+. .+.. ..++.+|...+.+++|+|.|..|+++++ +
T Consensus 153 VK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd-------dW~c-------~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 153 VKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD-------DWEC-------VQTLDGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred ccEEEEcCCc-ceeEEeccCCeEEEEeecCCC-------CeeE-------EEEecCccceEEEEEecCCCceEEEecCCc
Confidence 9999999998 899999999999999876321 1111 1234556778999999999999999865 9
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC------cceEE
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS------AGGIT 418 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~------~~~~~ 418 (497)
.++||.....-. ..|...+ +.+.|. ...|++++.|+.|++|.-...- .....
T Consensus 218 tv~Iw~~~~~~~-----~~~sr~~---------------Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~ 275 (312)
T KOG0645|consen 218 TVSIWRLYTDLS-----GMHSRAL---------------YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK 275 (312)
T ss_pred ceEeeeeccCcc-----hhcccce---------------Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh
Confidence 999998653111 1222222 578887 4589999999999999876431 11234
Q ss_pred EeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
-..|...|+++.+.|...+ .|++|++||. ++|
T Consensus 276 ~~aHe~dVNsV~w~p~~~~------~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 276 EGAHEVDVNSVQWNPKVSN------RLASGGDDGIVNFW 308 (312)
T ss_pred hcccccccceEEEcCCCCC------ceeecCCCceEEEE
Confidence 4679999999999993222 3899999999 999
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.1e-33 Score=236.43 Aligned_cols=329 Identities=12% Similarity=0.106 Sum_probs=261.7
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|++.|.+++.+|+.+++|||+.|..-.||+..+++. ..++.+|.
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------------~~eltgHK------------ 106 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------------AGELTGHK------------ 106 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------------eeEecCCC------------
Confidence 5999999999999999999999999999999998843 78889999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|+++.| +.+|.+|++|..+|.|+||+..++......
T Consensus 107 DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~---------------------------------------- 144 (399)
T KOG0296|consen 107 DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKL---------------------------------------- 144 (399)
T ss_pred CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEe----------------------------------------
Confidence 99999999 789999999999999999999987744321
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
...-..+.-+.|+|.+..|++| .||.+.+|.+. .+...++ +.+|..++++
T Consensus 145 ---------------------~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-~~~~~kv-------~~Gh~~~ct~ 195 (399)
T KOG0296|consen 145 ---------------------DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-SQALCKV-------MSGHNSPCTC 195 (399)
T ss_pred ---------------------ecccCceEEEEecccccEEEeecCCCcEEEEECC-CcceeeE-------ecCCCCCccc
Confidence 1234567789999999999999 99999999999 4344554 7899999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
=.|.|+| +.++++..||.|++||..+++.. ..+.. .+ .....++.++..+..++.|+ ++.++
T Consensus 196 G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~-~e-----------~~~~~~~~~~~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 196 GEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQ-AE-----------GLELPCISLNLAGSTLTKGNSEGVAC 258 (399)
T ss_pred ccccCCC-ceEEEEecCceEEEEecCCCcee----EEecc-cc-----------cCcCCccccccccceeEeccCCccEE
Confidence 9999999 99999999999999999998754 22221 00 14577888888888888885 48888
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+-+..+ ++.+....+... ..........+++ -.+.|+..=.+.|+|+.||+|.|||+.... .+....|..+|.
T Consensus 259 ~~~~~s-gKVv~~~n~~~~-~l~~~~e~~~esv---e~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~ 331 (399)
T KOG0296|consen 259 GVNNGS-GKVVNCNNGTVP-ELKPSQEELDESV---ESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVT 331 (399)
T ss_pred EEcccc-ceEEEecCCCCc-cccccchhhhhhh---hhcccccccchhhcccccceEEEEecccch--hheeccCCCceE
Confidence 888765 776666553110 0000000011122 244555555688999999999999998653 366778899999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS-LFFHY 496 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~ 496 (497)
++.|-+. . .|+++..+|. +.| .+++....+.+|...|.+++.+|+++.++++++|+ ..||.
T Consensus 332 ~l~w~~t---~-----~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 332 KLKWLNT---D-----YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEcCc---c-----hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999872 2 3899999999 999 88899999999999999999999999999999555 77775
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.1e-34 Score=253.35 Aligned_cols=284 Identities=15% Similarity=0.197 Sum_probs=233.4
Q ss_pred cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+|+..|+++.|.| .+.+|++|+.|+.|+||++-.. .++++++.+|.
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~----------------------~~~lrtf~gH~----------- 258 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD----------------------RRCLRTFKGHR----------- 258 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecC----------------------cceehhhhcch-----------
Confidence 6999999999999 8999999999999999998762 36799999999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.+|.+++| +++|..|+++|.|+.+++||+++|++...
T Consensus 259 -k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~---------------------------------------- 295 (503)
T KOG0282|consen 259 -KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSR---------------------------------------- 295 (503)
T ss_pred -hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEE----------------------------------------
Confidence 99999999 78999999999999999999999985542
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
+ .....++++.|+|++ +.+++| .|+.|+.||++ .++.++. ...|-..|
T Consensus 296 --------------------f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvqe-------Yd~hLg~i 345 (503)
T KOG0282|consen 296 --------------------F--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQE-------YDRHLGAI 345 (503)
T ss_pred --------------------E--ecCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHHH-------HHhhhhhe
Confidence 1 223467899999988 778888 99999999999 5555543 67788999
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
..+.|-++| ..+++.+.|+.++||+.+..-.+ +.... .+.-...++..+|+++++++-+ ++.
T Consensus 346 ~~i~F~~~g-~rFissSDdks~riWe~~~~v~i----k~i~~------------~~~hsmP~~~~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 346 LDITFVDEG-RRFISSSDDKSVRIWENRIPVPI----KNIAD------------PEMHTMPCLTLHPNGKWFAAQSMDNY 408 (503)
T ss_pred eeeEEccCC-ceEeeeccCccEEEEEcCCCccc----hhhcc------------hhhccCcceecCCCCCeehhhccCce
Confidence 999999999 99999999999999999876443 11111 1124578899999999999865 599
Q ss_pred EEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933 346 LKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 423 (497)
Q Consensus 346 i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 423 (497)
|.+|.+...- ...+.+++|...-. -..+.|||||.+|++|+.||.+.+||.++- .+...+++|.
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~vaGy-------------s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~ 474 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSVAGY-------------SCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHD 474 (503)
T ss_pred EEEEecccccccCHhhhhcceeccCc-------------eeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCC
Confidence 9999875422 23455677754311 147999999999999999999999999987 4458999999
Q ss_pred cceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 424 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.++..+.+.|.... .+|+++-+|. ++|
T Consensus 475 ~~ci~v~wHP~e~S------kvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 475 QPCIGVDWHPVEPS------KVATCGWDGLIKIW 502 (503)
T ss_pred cceEEEEecCCCcc------eeEecccCceeEec
Confidence 99999999996333 3799998888 888
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8e-32 Score=247.05 Aligned_cols=279 Identities=23% Similarity=0.400 Sum_probs=231.0
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|.++|++++|+|++++|++++.||.|++|+..+++. ...+..|.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~------------ 51 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT------------ 51 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC------------
Confidence 4899999999999999999999999999999987632 45567787
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..+..+.| .++++++++++.|+.|++|++.+++...
T Consensus 52 ~~i~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~------------------------------------------ 87 (289)
T cd00200 52 GPVRDVAA--SADGTYLASGSSDKTIRLWDLETGECVR------------------------------------------ 87 (289)
T ss_pred cceeEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceE------------------------------------------
Confidence 77899999 5777899999999999999998754211
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.+ ..|...+.++.|++++++++++ .++.|.+||++ ..+.... +..|...+.+
T Consensus 88 ------------------~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-------~~~~~~~i~~ 140 (289)
T cd00200 88 ------------------TL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLTT-------LRGHTDWVNS 140 (289)
T ss_pred ------------------EE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CcEEEEE-------eccCCCcEEE
Confidence 11 5777789999999998888888 69999999998 4444443 4578889999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+|++ .++++++.|+.|++||+++++.. ..+.. |...+.++.|+|+++.+++++ ++.|+
T Consensus 141 ~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 141 VAFSPDG-TFVASSSQDGTIKLWDLRTGKCV----ATLTG-------------HTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred EEEcCcC-CEEEEEcCCCcEEEEEccccccc----eeEec-------------CccccceEEECCCcCEEEEecCCCcEE
Confidence 9999997 88888888999999999876544 33333 346899999999998888775 69999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+||++. ++.+..+..|...+ .+++|+|++.++++++.||.|++|++.+++. ...+..|...+.
T Consensus 203 i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~ 265 (289)
T cd00200 203 LWDLST-GKCLGTLRGHENGV---------------NSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-VQTLSGHTNSVT 265 (289)
T ss_pred EEECCC-CceecchhhcCCce---------------EEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-EEEccccCCcEE
Confidence 999986 77787776666543 6899999999999998899999999988644 477889999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eec
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.+++++ ++.. +++++.|+. ++|
T Consensus 266 ~~~~~~--~~~~-----l~~~~~d~~i~iw 288 (289)
T cd00200 266 SLAWSP--DGKR-----LASGSADGTIRIW 288 (289)
T ss_pred EEEECC--CCCE-----EEEecCCCeEEec
Confidence 999998 4555 899999988 887
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.6e-33 Score=238.17 Aligned_cols=303 Identities=17% Similarity=0.257 Sum_probs=241.7
Q ss_pred hhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc
Q 010933 16 CSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS 95 (497)
Q Consensus 16 ~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (497)
+.+.+-.+.+...+.|.+.|.++... +++|++|++||.++|||..+ +...++.|
T Consensus 89 Yv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G------------------------k~~~~~~G 142 (423)
T KOG0313|consen 89 YVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG------------------------KSIKTIVG 142 (423)
T ss_pred EEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC------------------------ceEEEEec
Confidence 33445566677788899999999988 78999999999999999876 44678899
Q ss_pred cCcccccccccccccceeEEEEEe-cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCC
Q 010933 96 HEPEFDYLKSLEIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 174 (497)
Q Consensus 96 h~~~~~~~~~~~~~~~i~~l~~~~-s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (497)
|. ++|.+++|.- ++....|++++.|.++++|.++.++.+..
T Consensus 143 ht------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~-------------------------- 184 (423)
T KOG0313|consen 143 HT------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK-------------------------- 184 (423)
T ss_pred CC------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh--------------------------
Confidence 99 9999999973 33345799999999999999987763321
Q ss_pred CCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc-eeeEE-
Q 010933 175 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNI- 251 (497)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~- 251 (497)
+++.- .||...|-+++..++|..+++| .|.+|.+|+..... ..+.-
T Consensus 185 ------------------------------~~~~~-~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 185 ------------------------------ALKVC-RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred ------------------------------HHhHh-cccccceeEEEecCCCCeEEeecccceeeecccCCCcccccccc
Confidence 11111 5999999999999999999999 99999999933110 00000
Q ss_pred ---------------eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCc
Q 010933 252 ---------------VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK 316 (497)
Q Consensus 252 ---------------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 316 (497)
...+..++.+|..+|.++.|++. ..+++++.|.+|+.||+.+++... .+..
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~----~~~~-------- 299 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKS----TLTT-------- 299 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccccee----eeec--------
Confidence 00111357899999999999994 689999999999999999987662 2222
Q ss_pred cccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCC
Q 010933 317 SFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 393 (497)
Q Consensus 317 ~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 393 (497)
...++++.++|..++|++| +|..+++||.++++ ...+++.+|.+.+ .++.|+|...
T Consensus 300 ------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkwsp~~~ 358 (423)
T KOG0313|consen 300 ------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWSPTNE 358 (423)
T ss_pred ------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hheecCCCCc
Confidence 2578999999999999998 56999999998743 3567889999987 5899999654
Q ss_pred -EEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 394 -HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 394 -~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.|++|+.|+++++||+++.......+.+|...|.++.+.. +. .+++||.|+. +++
T Consensus 359 ~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~---~~-----~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE---GG-----LIVSGGADNKLRIF 415 (423)
T ss_pred eEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC---Cc-----eEEeccCcceEEEe
Confidence 6789999999999999998767799999999999999975 33 3899999998 877
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.7e-31 Score=274.77 Aligned_cols=304 Identities=20% Similarity=0.291 Sum_probs=221.6
Q ss_pred CCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 26 ~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
++...|.+.|.+++|+|+|++||+|+.|+.|+||+........ .. .......+.+ .
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--------------~~-~~~~~~~~~~-~-------- 532 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--------------RD-IHYPVVELAS-R-------- 532 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc--------------cc-cccceEEecc-c--------
Confidence 3445689999999999999999999999999999976421100 00 0001111222 2
Q ss_pred cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..|.+++|++ +++.+|++++.|++|++||+.+++..
T Consensus 533 ----~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~--------------------------------------- 568 (793)
T PLN00181 533 ----SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLV--------------------------------------- 568 (793)
T ss_pred ----CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEE---------------------------------------
Confidence 6689999963 45789999999999999999865522
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
..+ .+|...|++++|+| ++..|++| .|+.|++||++ .+..... +. +.
T Consensus 569 ---------------------~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-~~~~~~~-------~~-~~ 617 (793)
T PLN00181 569 ---------------------TEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-QGVSIGT-------IK-TK 617 (793)
T ss_pred ---------------------EEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-CCcEEEE-------Ee-cC
Confidence 222 68999999999997 78899999 99999999998 4555544 23 23
Q ss_pred CCeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 264 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 264 ~~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
..+.++.|++ ++ .+|++|+.||.|++||+++.+... ..+ .+|...|.++.|. ++.+|++++
T Consensus 618 ~~v~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~~---~~~-------------~~h~~~V~~v~f~-~~~~lvs~s 679 (793)
T PLN00181 618 ANICCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLPL---CTM-------------IGHSKTVSYVRFV-DSSTLVSSS 679 (793)
T ss_pred CCeEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCccc---eEe-------------cCCCCCEEEEEEe-CCCEEEEEE
Confidence 5789999965 56 999999999999999998754210 222 3466789999997 677888774
Q ss_pred -cCeEEEEecCCC-----CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce
Q 010933 343 -YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG 416 (497)
Q Consensus 343 -~~~i~lwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~ 416 (497)
|+.|++||++.. .+++..+.+|...+ ..++|+|++.+|++|+.|+.|++|+.......
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~- 743 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEVFVYHKAFPMPV- 743 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEEEEEECCCCCce-
Confidence 699999999742 35677888887654 57999999999999999999999998755322
Q ss_pred EEEe-ccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC-CceEE
Q 010933 417 ITVE-AGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFF 494 (497)
Q Consensus 417 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i 494 (497)
..+. .+..++.. .....+...|.+++|+|++..|++|+. +.+.|
T Consensus 744 ~s~~~~~~~~~~~----------------------------------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 744 LSYKFKTIDPVSG----------------------------------LEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred EEEecccCCcccc----------------------------------cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 1110 01000000 011234557999999999999999884 55999
Q ss_pred Ee
Q 010933 495 HY 496 (497)
Q Consensus 495 ~~ 496 (497)
|.
T Consensus 790 ~~ 791 (793)
T PLN00181 790 LE 791 (793)
T ss_pred Ee
Confidence 86
No 39
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-33 Score=261.34 Aligned_cols=265 Identities=17% Similarity=0.273 Sum_probs=213.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..++|..| ++|+.+||.|-.|..|++|.+...+++.+.....-.++... + .+
T Consensus 379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~----------------------s----ad 430 (707)
T KOG0263|consen 379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTE----------------------S----AD 430 (707)
T ss_pred CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhcccccc----------------------c----cc
Confidence 67899999 68889999999999999999987665544322111100000 0 00
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
-....-|.+ .....+++ .+|.++|...+|+|+.++|+++ .|+++++|.+. ...+.-. ..+|..+|..
T Consensus 431 ~~~~~~D~~---~~~~~~~L-~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~-t~s~~V~-------y~GH~~PVwd 498 (707)
T KOG0263|consen 431 VDVDMLDDD---SSGTSRTL-YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD-TWSCLVI-------YKGHLAPVWD 498 (707)
T ss_pred hhhhhcccc---CCceeEEe-ecCCCceeeeeecccccceeeccCCcceeeeecc-cceeEEE-------ecCCCcceee
Confidence 011111111 11222333 7999999999999999999999 99999999999 4444443 6799999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
+.|+|.| .+||+++.|++.++|........ +++.+ |.+.+.|+.|+|+..|+++|+ |.++|
T Consensus 499 V~F~P~G-yYFatas~D~tArLWs~d~~~Pl----Rifag-------------hlsDV~cv~FHPNs~Y~aTGSsD~tVR 560 (707)
T KOG0263|consen 499 VQFAPRG-YYFATASHDQTARLWSTDHNKPL----RIFAG-------------HLSDVDCVSFHPNSNYVATGSSDRTVR 560 (707)
T ss_pred EEecCCc-eEEEecCCCceeeeeecccCCch----hhhcc-------------cccccceEEECCcccccccCCCCceEE
Confidence 9999999 99999999999999998764433 55555 668899999999999999995 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+||+.+ +..++.|.||...+ ++++|||+|++|++|+.||.|++||+.++..+ ..+.+|.+.+.
T Consensus 561 lWDv~~-G~~VRiF~GH~~~V---------------~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 561 LWDVST-GNSVRIFTGHKGPV---------------TALAFSPCGRYLASGDEDGLIKIWDLANGSLV-KQLKGHTGTIY 623 (707)
T ss_pred EEEcCC-CcEEEEecCCCCce---------------EEEEEcCCCceEeecccCCcEEEEEcCCCcch-hhhhcccCcee
Confidence 999997 89999999999976 79999999999999999999999999998655 89999999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eec
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
++.|+. ++.. ||+|+.|.. .+|
T Consensus 624 SlsFS~--dg~v-----Lasgg~DnsV~lW 646 (707)
T KOG0263|consen 624 SLSFSR--DGNV-----LASGGADNSVRLW 646 (707)
T ss_pred EEEEec--CCCE-----EEecCCCCeEEEE
Confidence 999998 6666 999999999 999
No 40
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=260.01 Aligned_cols=272 Identities=21% Similarity=0.362 Sum_probs=206.2
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccc----------------------------cch-hhh--hhhcc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNH----------------------------ISR-SEL--EKQMD 78 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~----------------------------~~~-~~~--~~~~~ 78 (497)
.|.+.|.|+.||+||+|||+|+.|+.|+||.+...+.. ... +.. +...+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 69999999999999999999999999999998761110 000 000 00000
Q ss_pred cCCCCCC------cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCC
Q 010933 79 FTSTSHP------EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD 152 (497)
Q Consensus 79 ~~~~~~~------~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~ 152 (497)
.+-...| .-+++.+|.||. +.|.+|.|+ .+.+|+++|.|++||+|++...+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~-------- 401 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKE-------- 401 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheecccc---cCCeeEeccccccEEeecCCCcc--------
Confidence 0000111 345677899999 889999993 45799999999999999998655
Q ss_pred CCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEE
Q 010933 153 HFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS 231 (497)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~ 231 (497)
|++.| .|...|+|++|+| |.++|++
T Consensus 402 ----------------------------------------------------CL~~F--~HndfVTcVaFnPvDDryFiS 427 (712)
T KOG0283|consen 402 ----------------------------------------------------CLKVF--SHNDFVTCVAFNPVDDRYFIS 427 (712)
T ss_pred ----------------------------------------------------eeeEE--ecCCeeEEEEecccCCCcEee
Confidence 55555 8999999999999 8889999
Q ss_pred E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccc
Q 010933 232 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA 310 (497)
Q Consensus 232 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~ 310 (497)
| -|+.|+||++. ..+... ......-|++++|.|+| +..++|+.+|.+++|+++..++.. .+.-+.
T Consensus 428 GSLD~KvRiWsI~-d~~Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~----~~~I~~ 493 (712)
T KOG0283|consen 428 GSLDGKVRLWSIS-DKKVVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVS----DFHIRL 493 (712)
T ss_pred cccccceEEeecC-cCeeEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEE----eeeEee
Confidence 9 99999999998 454443 33445889999999999 999999999999999998765432 111100
Q ss_pred cccCCccccccccccccEEEEeeCC--CEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933 311 ESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 388 (497)
Q Consensus 311 ~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (497)
.. .+ -..|. .|+.+.|.|.. +.|++..|..|||||.+. ..++..++++...... ....|
T Consensus 494 ~~---~K-k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ-------------~~Asf 554 (712)
T KOG0283|consen 494 HN---KK-KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ-------------ISASF 554 (712)
T ss_pred cc---Cc-cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-------------eeeeE
Confidence 00 00 01122 79999998754 478888899999999985 8889999987764321 37899
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC
Q 010933 389 SGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 389 s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
+.||++|+++++|..|+||+.+.
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCC
Confidence 99999999999999999999844
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-32 Score=255.22 Aligned_cols=296 Identities=16% Similarity=0.216 Sum_probs=240.1
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
.+..|..++|+|...+++++-..|.|++||..-+ .++..|..|+ +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-----------------------tli~rFdeHd------------G 52 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-----------------------TLIDRFDEHD------------G 52 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhh-----------------------hHHhhhhccC------------C
Confidence 3578899999999999999999999999999766 4488899999 9
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
+|..++|+ |...+|++|+.|..|++|+..+.++.
T Consensus 53 pVRgv~FH--~~qplFVSGGDDykIkVWnYk~rrcl-------------------------------------------- 86 (1202)
T KOG0292|consen 53 PVRGVDFH--PTQPLFVSGGDDYKIKVWNYKTRRCL-------------------------------------------- 86 (1202)
T ss_pred ccceeeec--CCCCeEEecCCccEEEEEecccceeh--------------------------------------------
Confidence 99999995 67889999999999999999877643
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.++ .+|.+.|..+.|++.-.+|+++ +|.+|+||+.. .+.++.+ +.+|...|+|.
T Consensus 87 ----------------ftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iav-------ltGHnHYVMcA 141 (1202)
T KOG0292|consen 87 ----------------FTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAV-------LTGHNHYVMCA 141 (1202)
T ss_pred ----------------hhh-ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEE-------EecCceEEEee
Confidence 333 7999999999999999999999 99999999999 7788887 89999999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccc----cceeccccc--------ccCCccccccccccccEEEEeeCCCE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS----ARILRDAAE--------SHGSKSFFTEIIASISDIKFANDGQH 337 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~s~~g~~ 337 (497)
.|+|.. .+++++|-|.+||+||+..-+..... ...+..++. ..--...+.+|...|+.++|+|.-.+
T Consensus 142 qFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 142 QFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred ccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 999988 89999999999999999653321100 001111111 01112346799999999999999999
Q ss_pred EEEEec-CeEEEEecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 338 LLSRDY-MNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 338 l~~~~~-~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
+++|+| ..|++|.+.... =.+.+..+|.+.+ .++-|+|...+|++.|+|++|+|||+.....+
T Consensus 221 iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 221 IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred EEecCCcceeeEEEeccccceeehhhhcccCCc---------------ceEEecCccceeEecCCCccEEEEecccccce
Confidence 999865 999999986411 2466788998876 68999999999999999999999999876555
Q ss_pred eEEEeccCcceeeeEeecCCCcccccccceeEeeccCceec
Q 010933 416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN 456 (497)
Q Consensus 416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw 456 (497)
++++-..+.-+.++..|.- ..+|.|-+.|..++
T Consensus 286 -~tfrrendRFW~laahP~l-------NLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 286 -QTFRRENDRFWILAAHPEL-------NLFAAGHDSGMIVF 318 (1202)
T ss_pred -eeeeccCCeEEEEEecCCc-------ceeeeecCCceEEE
Confidence 8888888888999998842 22444444444777
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=247.69 Aligned_cols=363 Identities=14% Similarity=0.160 Sum_probs=282.7
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...|+|+.-+|+.-.||+|..||.|+||+...+. ...++.||. .+
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-----------------------~~~tfngHK------------~A 109 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-----------------------ILITFNGHK------------AA 109 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCc-----------------------eeeeecccc------------cc
Confidence 3589999999999999999999999999998653 367789999 99
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
|+.+.| +..|..|++||.|+.|.+||+-...-.... ..+...+....+.....++.+.+. ++.
T Consensus 110 Vt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-------------~GHkd~iT~~~F~~~~~~lvS~sK--Ds~ 172 (888)
T KOG0306|consen 110 VTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRL-------------RGHKDSITQALFLNGDSFLVSVSK--DSM 172 (888)
T ss_pred eEEEEE--cccCceEeecCCCccEEEEEeccceeeEEe-------------ecchHHHhHHhccCCCeEEEEecc--Cce
Confidence 999999 789999999999999999999654321110 112233444555555666666655 899
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC-----------------------ce
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS-----------------------DQ 247 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~-----------------------~~ 247 (497)
+++||++.. .|..+. -.|...++.+++.+ +.++++ .|+.+++|++... ++
T Consensus 173 iK~WdL~tq---hCf~Th-vd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R 246 (888)
T KOG0306|consen 173 IKFWDLETQ---HCFETH-VDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR 246 (888)
T ss_pred EEEEecccc---eeeeEE-ecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCc
Confidence 999999954 577776 78999999999987 677777 9999999998110 00
Q ss_pred --------------------------------------------------------------------------------
Q 010933 248 -------------------------------------------------------------------------------- 247 (497)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (497)
T Consensus 247 ~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~ 326 (888)
T KOG0306|consen 247 EINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSF 326 (888)
T ss_pred eeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEE
Confidence
Q ss_pred --------e----------eEEeecC----C---------CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC
Q 010933 248 --------C----------FNIVDMK----P---------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 296 (497)
Q Consensus 248 --------~----------~~~~~~~----~---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 296 (497)
. +..+.+. + -++.+|...|++++++.+. ..+ ..+..+.|++|+..+.
T Consensus 327 dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~-~Sga~~SikiWn~~t~ 404 (888)
T KOG0306|consen 327 DVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILL-ASGAGESIKIWNRDTL 404 (888)
T ss_pred EEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eee-eecCCCcEEEEEccCc
Confidence 0 0000000 0 2345788889999999885 444 4445678999999988
Q ss_pred cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccC
Q 010933 297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 375 (497)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
+.+ +.++. +.+.+..|-|.+++++.|.. |.+.+||+.. ...+.++++|++.+
T Consensus 405 kci----RTi~~---------------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaI------- 457 (888)
T KOG0306|consen 405 KCI----RTITC---------------GYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRAHDGAI------- 457 (888)
T ss_pred cee----EEecc---------------ccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhccccce-------
Confidence 776 77766 67899999999999999977 9999999987 88899999999865
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc----ceEEEe-------ccCcceeeeEeecCCCcccccccc
Q 010933 376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA----GGITVE-------AGKNENRKPILQAAPRARRSSLSN 444 (497)
Q Consensus 376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~----~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~ 444 (497)
++++.+||++.+++||.|.+|++||..-... ....+. .-...+.++.++| |+++
T Consensus 458 --------Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp--dgk~----- 522 (888)
T KOG0306|consen 458 --------WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP--DGKL----- 522 (888)
T ss_pred --------eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC--CCcE-----
Confidence 7999999999999999999999999743211 111111 2346788999999 8888
Q ss_pred eeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 445 LTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 445 l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
||.+--|.. +++ .+-.....+.+|.-||.+|..+||++.+++|+ +.+++||-
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 999999998 888 44455667889999999999999999999999 77799994
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=239.14 Aligned_cols=234 Identities=13% Similarity=0.281 Sum_probs=196.2
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
....|+|+.+.. ..+++|..|++|+|||..+- .++..+.||+ +
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~-----------------------~c~~~L~GHt------------G 238 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSL-----------------------ECLKILTGHT------------G 238 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccH-----------------------HHHHhhhcCC------------C
Confidence 457899999864 46899999999999998753 5688899999 9
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.|+.| +.+.+++|+.|.+|++||+++++...
T Consensus 239 SVLCLqy----d~rviisGSSDsTvrvWDv~tge~l~------------------------------------------- 271 (499)
T KOG0281|consen 239 SVLCLQY----DERVIVSGSSDSTVRVWDVNTGEPLN------------------------------------------- 271 (499)
T ss_pred cEEeeec----cceEEEecCCCceEEEEeccCCchhh-------------------------------------------
Confidence 9999999 45699999999999999999988443
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
++ -+|...|..+.|+. .+++++ .|.+|.+||+.... .... ...+.+|.+.|..+
T Consensus 272 -----------------tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-~it~----rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 272 -----------------TL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-DITL----RRVLVGHRAAVNVV 326 (499)
T ss_pred -----------------HH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-HHHH----HHHHhhhhhheeee
Confidence 33 68999999999973 488888 99999999998433 1111 02367999999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~l 348 (497)
.|+. +++++++.|.+|++|++.+++.+ +++.+ |...|.|+.+. |+++++| +|.+|++
T Consensus 327 dfd~---kyIVsASgDRTikvW~~st~efv----Rtl~g-------------HkRGIAClQYr--~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 327 DFDD---KYIVSASGDRTIKVWSTSTCEFV----RTLNG-------------HKRGIACLQYR--DRLVVSGSSDNTIRL 384 (499)
T ss_pred cccc---ceEEEecCCceEEEEeccceeee----hhhhc-------------ccccceehhcc--CeEEEecCCCceEEE
Confidence 9974 68999999999999999998766 55544 66789888874 8899998 5699999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
||+.. +++++.+.+|+..+ .++.| |.+.|++|+.||+|+|||+..+.
T Consensus 385 wdi~~-G~cLRvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 385 WDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred Eeccc-cHHHHHHhchHHhh---------------hheee--cCceeeeccccceEEEEeccccc
Confidence 99997 99999999999976 68888 67889999999999999998763
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=228.30 Aligned_cols=278 Identities=15% Similarity=0.190 Sum_probs=241.3
Q ss_pred cCCcceEEEEEcC---CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 30 QDVDIVSAIEFDK---TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 30 ~h~~~I~~i~~sp---~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
+|+.+|-.++||| +|-+|++++.||.-.+-+-+++ ..+.+|.||.
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-----------------------dwigtfeghk--------- 59 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-----------------------DWIGTFEGHK--------- 59 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-----------------------CcEEeeeccC---------
Confidence 6999999999996 8999999999998888777776 4589999999
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
+.|++... +.+...-++++.|-+.++||.-+|.....
T Consensus 60 ---gavw~~~l--~~na~~aasaaadftakvw~a~tgdelhs-------------------------------------- 96 (334)
T KOG0278|consen 60 ---GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELHS-------------------------------------- 96 (334)
T ss_pred ---cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhhh--------------------------------------
Confidence 99999998 56767788889999999999988774432
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
-.|..-|.+++|+.|.+.|++| .+..+++||++..... |..+.+|...
T Consensus 97 ------------------------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap-------p~E~~ghtg~ 145 (334)
T KOG0278|consen 97 ------------------------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP-------PKEISGHTGG 145 (334)
T ss_pred ------------------------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC-------chhhcCCCCc
Confidence 3778889999999999999999 9999999999854433 3457899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCe
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 345 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 345 (497)
|..+.|.... +.|++++.|+.||+||.+++..+ +.++. ..+++++.++++|++|..+..+.
T Consensus 146 Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v----~sL~~--------------~s~VtSlEvs~dG~ilTia~gss 206 (334)
T KOG0278|consen 146 IRTVLWCHED-KCILSSADDKTVRLWDHRTGTEV----QSLEF--------------NSPVTSLEVSQDGRILTIAYGSS 206 (334)
T ss_pred ceeEEEeccC-ceEEeeccCCceEEEEeccCcEE----EEEec--------------CCCCcceeeccCCCEEEEecCce
Confidence 9999999887 89999999999999999999876 44444 36799999999999999988799
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
|.+||..+ ..+++.++..... .+.+.+|+...+++|++|..++.||..+++++....++|.+|
T Consensus 207 V~Fwdaks-f~~lKs~k~P~nV----------------~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp 269 (334)
T KOG0278|consen 207 VKFWDAKS-FGLLKSYKMPCNV----------------ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP 269 (334)
T ss_pred eEEecccc-ccceeeccCcccc----------------ccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc
Confidence 99999987 7778887766553 589999999999999999999999999998775556999999
Q ss_pred eeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
|.++.|+| +|.. -|+|+.||. ++|
T Consensus 270 VhcVrFSP--dGE~-----yAsGSEDGTirlW 294 (334)
T KOG0278|consen 270 VHCVRFSP--DGEL-----YASGSEDGTIRLW 294 (334)
T ss_pred eEEEEECC--CCce-----eeccCCCceEEEE
Confidence 99999999 6766 899999999 999
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.8e-33 Score=233.33 Aligned_cols=293 Identities=16% Similarity=0.235 Sum_probs=235.5
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+....+.|..|||||+||++|+.||.|-+|+..+|+. ++.++ |.-...|.-|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl---rKDLk------------YQAqd~fMMmd------------ 263 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL---RKDLK------------YQAQDNFMMMD------------ 263 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchh---hhhhh------------hhhhcceeecc------------
Confidence 4467889999999999999999999999999999875 22221 11222233444
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+|.|+.| +.|..++++|+.||.|++|.+.+|.
T Consensus 264 ~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~--------------------------------------------- 296 (508)
T KOG0275|consen 264 DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQ--------------------------------------------- 296 (508)
T ss_pred cceEEEee--cccHHHhhccCcCCcEEEEEEecch---------------------------------------------
Confidence 99999999 6899999999999999999999888
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
|++.|-..|+..|+++.|+.|+..++++ .|.++++--+. .+++++. +.+|++.|+.
T Consensus 297 ---------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKE-------frGHsSyvn~ 353 (508)
T KOG0275|consen 297 ---------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKE-------FRGHSSYVNE 353 (508)
T ss_pred ---------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHH-------hcCccccccc
Confidence 4444446999999999999999999998 99999999999 6667664 8899999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEe-cCeE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRD-YMNL 346 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~-~~~i 346 (497)
+.|.++| +.+++++.||+|++|+..+.+.. ..|.. .+..-+|+.+..-|.. ..++++. .+++
T Consensus 354 a~ft~dG-~~iisaSsDgtvkvW~~KtteC~----~Tfk~-----------~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 354 ATFTDDG-HHIISASSDGTVKVWHGKTTECL----STFKP-----------LGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred eEEcCCC-CeEEEecCCccEEEecCcchhhh----hhccC-----------CCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 9999999 99999999999999999998765 33332 1113568888887754 4555554 4999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcce
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 426 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v 426 (497)
++.+++ ++.++.+......- .- ..+.+.||.|.++++.++|+.++.|.+.+|.. ..++..|...+
T Consensus 418 ~imn~q--GQvVrsfsSGkREg----------Gd--Fi~~~lSpkGewiYcigED~vlYCF~~~sG~L-E~tl~VhEkdv 482 (508)
T KOG0275|consen 418 YIMNMQ--GQVVRSFSSGKREG----------GD--FINAILSPKGEWIYCIGEDGVLYCFSVLSGKL-ERTLPVHEKDV 482 (508)
T ss_pred EEEecc--ceEEeeeccCCccC----------Cc--eEEEEecCCCcEEEEEccCcEEEEEEeecCce-eeeeecccccc
Confidence 999986 88888886543321 11 14789999999999999999999999999854 48999999988
Q ss_pred eeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 427 RKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
-.++-.|-. ..+|+=+.||. ++|.
T Consensus 483 IGl~HHPHq-------NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 483 IGLTHHPHQ-------NLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccCccc-------chhhhhcccchhhhcC
Confidence 888888742 24788889998 8883
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=233.91 Aligned_cols=288 Identities=14% Similarity=0.215 Sum_probs=245.1
Q ss_pred CcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccc
Q 010933 85 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 164 (497)
Q Consensus 85 ~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (497)
|.+.....+.+|. .+|+.+-|+ |+-..+++++.|++|++||..++++...
T Consensus 96 pRp~l~~~l~g~r------------~~vt~v~~h--p~~~~v~~as~d~tikv~D~~tg~~e~~---------------- 145 (406)
T KOG0295|consen 96 PRPNLVQKLAGHR------------SSVTRVIFH--PSEALVVSASEDATIKVFDTETGELERS---------------- 145 (406)
T ss_pred CCCCchhhhhccc------------cceeeeeec--cCceEEEEecCCceEEEEEccchhhhhh----------------
Confidence 4444555566677 889999994 6777888999999999999999885332
Q ss_pred cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933 165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 243 (497)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~ 243 (497)
+++|...+.+++|+..|+.++++ .|-.+++||..
T Consensus 146 ---------------------------------------------LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 146 ---------------------------------------------LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred ---------------------------------------------hhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 38999999999999999999999 88889999998
Q ss_pred cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
...++++. +.+|+..|.++.|-|.| .++++++.|..|+.|++.++-.+ +.|.. |.
T Consensus 181 ~~~~c~ks-------~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv----~t~~~-------------h~ 235 (406)
T KOG0295|consen 181 TFFRCIKS-------LIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCV----KTFPG-------------HS 235 (406)
T ss_pred HHHHHHHH-------hcCcccceeeEEEEecC-CeeeecccccceeEEecccceeE----EeccC-------------ch
Confidence 54555554 77999999999999999 99999999999999999998765 55555 56
Q ss_pred ccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-----------
Q 010933 324 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----------- 391 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------- 391 (497)
..+..+..+.||.++|+++ +.++++|-+.+ +.+...++.|+..+ -+++|.|.
T Consensus 236 ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~v---------------Eci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 236 EWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPV---------------ECIAWAPESSYPSISEATG 299 (406)
T ss_pred HhEEEEEecCCeeEEEecCCCceEEEEEecc-chhhhhhhccccce---------------EEEEecccccCcchhhccC
Confidence 7899999999999999986 49999999987 88888899999876 35666542
Q ss_pred ----CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCccc
Q 010933 392 ----GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHEL 464 (497)
Q Consensus 392 ----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~ 464 (497)
++++.+++.|++|++||+.++.. ..++.+|.+.|+.++|+| .|++ +++..+|+. ++| ...+-...
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~~af~p--~Gky-----i~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRGVAFSP--GGKY-----ILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeeeeEEcC--CCeE-----EEEEecCCcEEEEEeccceeeec
Confidence 36999999999999999999944 599999999999999999 7888 999999999 999 45555566
Q ss_pred ccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 465 SYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 465 ~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
...|+.-|++++|+.+.+++++|+ +-..++|.
T Consensus 372 ~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 372 LEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 678899999999999999999999 55588885
No 47
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.1e-32 Score=242.28 Aligned_cols=275 Identities=20% Similarity=0.287 Sum_probs=206.5
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|+..|+++++.|.|..+++|+.|..|++||+.+... +.+.++.+.....|.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda----------------s~~~fr~l~P~E~h~------------ 216 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA----------------SMRSFRQLQPCETHQ------------ 216 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccc----------------cchhhhccCcccccc------------
Confidence 4678999999999999999999999999999987542 122333344444555
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
|++++| ++.+..|++.+....++|+|-.+.+.....+.
T Consensus 217 --i~sl~y--s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG-------------------------------------- 254 (641)
T KOG0772|consen 217 --INSLQY--SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG-------------------------------------- 254 (641)
T ss_pred --cceeee--cCCCCeEEEEecCcceeEEccCCceeeeeecc--------------------------------------
Confidence 999999 67888999999999999999887665554322
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
.-.|-|+.. .++|...+++.+|+|..+ .++++ .||++++||+...+...+++..++ ..+..-+++
T Consensus 255 -DQYI~Dm~n----------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--~~g~Rv~~t 321 (641)
T KOG0772|consen 255 -DQYIRDMYN----------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--AGGKRVPVT 321 (641)
T ss_pred -chhhhhhhc----------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--CCCcccCce
Confidence 122222222 279999999999999544 55666 999999999997666666654443 335567889
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc--cccEEEEeeCCCEEEEE-ecC
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSR-DYM 344 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~-~~~ 344 (497)
.++|+|+| .+||+|..||.|.+|+.+....- ....+- ..|.. .|++++||++|++|++- .|+
T Consensus 322 sC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk-------------~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 322 SCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR-PVMKVK-------------DAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred eeecCCCc-chhhhcccCCceeeeecCCcccc-cceEee-------------eccCCCCceeEEEeccccchhhhccCCC
Confidence 99999999 99999999999999998553211 111121 23444 89999999999999995 569
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCcEEEEEcCCCCcc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVGSAG 415 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~vw~~~~~~~~ 415 (497)
.+++||+++..+++....+-...- +-+.++|||+.++|++|.. .|++.+||..+-+.+
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred ceeeeeccccccchhhhcCCCccC-------------CCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 999999998778887776554332 1268999999999999875 567899998766443
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-31 Score=255.07 Aligned_cols=281 Identities=21% Similarity=0.308 Sum_probs=229.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.++.| +++|+.+++++.|+.+++|+...... .
T Consensus 160 ~sv~~~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~-~------------------------------------------ 194 (456)
T KOG0266|consen 160 PSVTCVDF--SPDGRALAAASSDGLIRIWKLEGIKS-N------------------------------------------ 194 (456)
T ss_pred CceEEEEE--cCCCCeEEEccCCCcEEEeecccccc-h------------------------------------------
Confidence 78999999 68999999999999999999955441 0
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.++.+ .+|...|.+++|+|+++.++++ .|++|++||+...+..+++ +.+|...|++
T Consensus 195 ---------------~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~-------l~gH~~~v~~ 251 (456)
T KOG0266|consen 195 ---------------LLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT-------LKGHSTYVTS 251 (456)
T ss_pred ---------------hhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE-------ecCCCCceEE
Confidence 11111 6899999999999999999999 9999999999646677776 7899999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+|++ +++++|+.|+.|++||+++++.. +.+.. |...|++++|++++++|++++ |+.|+
T Consensus 252 ~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~----~~l~~-------------hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 252 VAFSPDG-NLLVSGSDDGTVRIWDVRTGECV----RKLKG-------------HSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred EEecCCC-CEEEEecCCCcEEEEeccCCeEE----Eeeec-------------cCCceEEEEECCCCCEEEEcCCCccEE
Confidence 9999999 99999999999999999997655 55555 668999999999999999986 59999
Q ss_pred EEecCCCCc--eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 348 LWDIRMDST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 348 lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
+||+.+ +. ++..+..+.... .++.+.|+|++++|++++.|+.+++||+..+... ..+.+|...
T Consensus 314 vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-~~~~~~~~~ 378 (456)
T KOG0266|consen 314 VWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-GTYTGHSNL 378 (456)
T ss_pred EEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-eeecccCCc
Confidence 999997 66 456776666541 1268999999999999999999999999988554 788888776
Q ss_pred eeee-EeecCCCcccccccceeEeeccCc-eec--CCCCCccccccc-CCCeEEEEEecCCCEEEEEe---CCceEEEe
Q 010933 426 NRKP-ILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNL-SSKLLHLAWHPTTNLIACAN---GNSLFFHY 496 (497)
Q Consensus 426 v~~~-~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~-~~~i~~l~~~p~~~~la~~~---~~~~~i~~ 496 (497)
+++. .......+.+ +.+|+.|+. ++| ..+.......+| ...+..++|+|..+++++++ +..+.+|.
T Consensus 379 ~~~~~~~~~~~~~~~-----i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKL-----IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ceeEecccccCCCCe-----EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 4222 1111124555 999999999 999 344556667788 88999999999999999998 45577774
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.6e-33 Score=244.58 Aligned_cols=285 Identities=21% Similarity=0.363 Sum_probs=232.9
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
+.+..+.||. ..|+++.|.| ..+.+|++++.|+.|+||++.+..
T Consensus 205 k~~~~~~gH~------------kgvsai~~fp-~~~hLlLS~gmD~~vklW~vy~~~----------------------- 248 (503)
T KOG0282|consen 205 KLSHNLSGHT------------KGVSAIQWFP-KKGHLLLSGGMDGLVKLWNVYDDR----------------------- 248 (503)
T ss_pred hheeeccCCc------------cccchhhhcc-ceeeEEEecCCCceEEEEEEecCc-----------------------
Confidence 4566788998 8999999964 368899999999999999997622
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD 246 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~ 246 (497)
.|+++| .+|..+|.+++|+++|..++++ .|+.|++||.+ ++
T Consensus 249 ------------------------------------~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG 290 (503)
T KOG0282|consen 249 ------------------------------------RCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TG 290 (503)
T ss_pred ------------------------------------ceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccc-cc
Confidence 366776 8999999999999999999998 99999999999 56
Q ss_pred eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccc
Q 010933 247 QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 326 (497)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 326 (497)
++...+ .....++++.|+|++++.|++|+.|+.|+.||+|+++.+ +.+.. |-+.|
T Consensus 291 ~~~~~f--------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~-------------hLg~i 345 (503)
T KOG0282|consen 291 QVLSRF--------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDR-------------HLGAI 345 (503)
T ss_pred eEEEEE--------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHh-------------hhhhe
Confidence 666542 244678999999999899999999999999999999765 33333 45789
Q ss_pred cEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeee---ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 327 SDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK---IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 327 ~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
..+.|-++|+.+++++| ++++||+.+. ..+++.+. .|.. .++..+|++++++.-+.|+
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~hsm-----------------P~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMHTM-----------------PCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCC-CccchhhcchhhccC-----------------cceecCCCCCeehhhccCc
Confidence 99999999999999866 9999999986 44444332 2322 3799999999999999999
Q ss_pred cEEEEEcCCCC--cceEEEeccCccee--eeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEE
Q 010933 403 LLRIFSHGVGS--AGGITVEAGKNENR--KPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHL 475 (497)
Q Consensus 403 ~i~vw~~~~~~--~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l 475 (497)
.|.+|.+...- .....+++|..+-. .+.|+| |+.+ |++|+.+|. .+| ++..+...+..|++++..+
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp--DG~~-----l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v 480 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP--DGRT-----LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGV 480 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcC--CCCe-----EEeecCCccEEEeechhhhhhhccccCCcceEEE
Confidence 99999976532 22466788876654 455666 8888 999999999 999 6777788888999999999
Q ss_pred EEecCC-CEEEEEe-CCceEEEe
Q 010933 476 AWHPTT-NLIACAN-GNSLFFHY 496 (497)
Q Consensus 476 ~~~p~~-~~la~~~-~~~~~i~~ 496 (497)
.|||.. ..+|+|+ ++.+++|.
T Consensus 481 ~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcceeEecccCceeEecC
Confidence 999986 4577777 66699984
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.4e-30 Score=237.27 Aligned_cols=281 Identities=20% Similarity=0.332 Sum_probs=228.3
Q ss_pred ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933 91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 170 (497)
Q Consensus 91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (497)
.++++|. ++|.+++| +++++++++++.|+.+++|++.+++...
T Consensus 3 ~~~~~h~------------~~i~~~~~--~~~~~~l~~~~~~g~i~i~~~~~~~~~~----------------------- 45 (289)
T cd00200 3 RTLKGHT------------GGVTCVAF--SPDGKLLATGSGDGTIKVWDLETGELLR----------------------- 45 (289)
T ss_pred hHhcccC------------CCEEEEEE--cCCCCEEEEeecCcEEEEEEeeCCCcEE-----------------------
Confidence 4567888 89999999 6788999999999999999998655211
Q ss_pred ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceee
Q 010933 171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 249 (497)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 249 (497)
. +..|...+..+.|+|+++.++++ .++.|++|+++ .++..
T Consensus 46 -------------------------------------~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~-~~~~~ 86 (289)
T cd00200 46 -------------------------------------T-LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-TGECV 86 (289)
T ss_pred -------------------------------------E-EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC-cccce
Confidence 1 15777888999999999999998 89999999998 33333
Q ss_pred EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933 250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 329 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 329 (497)
.. +..|...+.++.|+|++ .++++++.|+.|++||+++++.. ..+. .|...+.++
T Consensus 87 ~~-------~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~----~~~~-------------~~~~~i~~~ 141 (289)
T cd00200 87 RT-------LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL----TTLR-------------GHTDWVNSV 141 (289)
T ss_pred EE-------EeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE----EEec-------------cCCCcEEEE
Confidence 32 55788899999999997 88888888999999999866533 2222 245689999
Q ss_pred EEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 330 KFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 330 ~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
.|+|++.+++++. ++.|++||++. ++.+..+..|...+ .++.|+|+++.|++++.|+.|++||
T Consensus 142 ~~~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 142 AFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEV---------------NSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEcCcCCEEEEEcCCCcEEEEEccc-cccceeEecCcccc---------------ceEEECCCcCEEEEecCCCcEEEEE
Confidence 9999999999987 79999999986 77788888776543 6899999999999999999999999
Q ss_pred cCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC--CCCcccccccCCCeEEEEEecCCCEEE
Q 010933 409 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGHHELSYNLSSKLLHLAWHPTTNLIA 485 (497)
Q Consensus 409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~~~~~~~~~~~i~~l~~~p~~~~la 485 (497)
+..++. ...+..|..++..+.+.+. +.+ +++++.++. .+|.. +........+...|.+++|+|++++|+
T Consensus 206 ~~~~~~-~~~~~~~~~~i~~~~~~~~--~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 206 LSTGKC-LGTLRGHENGVNSVAFSPD--GYL-----LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred CCCCce-ecchhhcCCceEEEEEcCC--CcE-----EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence 988644 3677789999999999983 555 777776888 99933 344555567888999999999999999
Q ss_pred EEeCC-ceEEEe
Q 010933 486 CANGN-SLFFHY 496 (497)
Q Consensus 486 ~~~~~-~~~i~~ 496 (497)
+++.+ .+.+|.
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 98855 588884
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-30 Score=216.47 Aligned_cols=268 Identities=18% Similarity=0.275 Sum_probs=210.5
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
-.+.|+++.|+++|.+|++++.|.+++|||...+++ ++++..++ -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----------------------~~ti~skk------------y 57 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----------------------VKTINSKK------------Y 57 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----------------------eeEeeccc------------c
Confidence 367999999999999999999999999999998854 66666666 7
Q ss_pred ceeEEEEEecCCCCEEEEEe--CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 111 KINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.|..++|. .++ ..++.++ .|.+|+.-++.+.+
T Consensus 58 G~~~~~Ft-h~~-~~~i~sStk~d~tIryLsl~dNk-------------------------------------------- 91 (311)
T KOG1446|consen 58 GVDLACFT-HHS-NTVIHSSTKEDDTIRYLSLHDNK-------------------------------------------- 91 (311)
T ss_pred cccEEEEe-cCC-ceEEEccCCCCCceEEEEeecCc--------------------------------------------
Confidence 78889996 333 3444444 58899999888766
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
.++.| .||...|++++.+|-+..++++ .|++|++||++ ..++...+ +...-.
T Consensus 92 ----------------ylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR-~~~cqg~l---------~~~~~p 144 (311)
T KOG1446|consen 92 ----------------YLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR-VKKCQGLL---------NLSGRP 144 (311)
T ss_pred ----------------eEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEec-CCCCceEE---------ecCCCc
Confidence 44444 9999999999999999999999 99999999999 55555542 222335
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i 346 (497)
.++|+|+| -++|++...+.|++||+|.-..- ....+.. . .+.....+.|.|||||++|+.+++ +.+
T Consensus 145 i~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkg--PF~tf~i-~---------~~~~~ew~~l~FS~dGK~iLlsT~~s~~ 211 (311)
T KOG1446|consen 145 IAAFDPEG-LIFALANGSELIKLYDLRSFDKG--PFTTFSI-T---------DNDEAEWTDLEFSPDGKSILLSTNASFI 211 (311)
T ss_pred ceeECCCC-cEEEEecCCCeEEEEEecccCCC--CceeEcc-C---------CCCccceeeeEEcCCCCEEEEEeCCCcE
Confidence 67899999 88998888889999999874211 0122221 0 012357899999999999999876 899
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec-cCcc
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNE 425 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~ 425 (497)
++.|.-. |....++..+..... +. .+.+|+||++++++|+.||+|++|+++++..+ ..+++ +..+
T Consensus 212 ~~lDAf~-G~~~~tfs~~~~~~~----------~~--~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v-~~~~~~~~~~ 277 (311)
T KOG1446|consen 212 YLLDAFD-GTVKSTFSGYPNAGN----------LP--LSATFTPDSKFVLSGSDDGTIHVWNLETGKKV-AVLRGPNGGP 277 (311)
T ss_pred EEEEccC-CcEeeeEeeccCCCC----------cc--eeEEECCCCcEEEEecCCCcEEEEEcCCCcEe-eEecCCCCCC
Confidence 9999976 888888888765421 11 37999999999999999999999999999776 55555 8999
Q ss_pred eeeeEeec
Q 010933 426 NRKPILQA 433 (497)
Q Consensus 426 v~~~~~~~ 433 (497)
+.++.|.|
T Consensus 278 ~~~~~fnP 285 (311)
T KOG1446|consen 278 VSCVRFNP 285 (311)
T ss_pred ccccccCC
Confidence 99999988
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=230.64 Aligned_cols=287 Identities=13% Similarity=0.133 Sum_probs=226.3
Q ss_pred ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933 89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 168 (497)
Q Consensus 89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
..+.++.|+ +.|+-+.| +++|++||+++.|.+..+|++......
T Consensus 216 t~qil~~ht------------dEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~---------------------- 259 (519)
T KOG0293|consen 216 TWQILQDHT------------DEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHF---------------------- 259 (519)
T ss_pred hhhhHhhCC------------CcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcce----------------------
Confidence 345677888 77999999 789999999999999999988543311
Q ss_pred ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce
Q 010933 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 247 (497)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 247 (497)
+..+++ .+|..+|..+.|+||.+++++| .+..+.+||+. ++.
T Consensus 260 -----------------------------------kl~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~-tgd 302 (519)
T KOG0293|consen 260 -----------------------------------KLKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD-TGD 302 (519)
T ss_pred -----------------------------------eeeeee-ecccCceEEEEECCCCCeEEecCchHheeeccCC-cch
Confidence 123333 7999999999999999999998 88889999999 454
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 327 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 327 (497)
....+ -.++...+.+++|.||| ..+++|+.|+.|..||+.... . ..|++-. ...|.
T Consensus 303 ~~~~y------~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-~----~~W~gvr------------~~~v~ 358 (519)
T KOG0293|consen 303 LRHLY------PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-L----GNWEGVR------------DPKVH 358 (519)
T ss_pred hhhhc------ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-h----hcccccc------------cceeE
Confidence 54432 23466889999999999 999999999999999997543 2 4555411 13589
Q ss_pred EEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933 328 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406 (497)
Q Consensus 328 ~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v 406 (497)
++++.+||+++++. .|..|++|+..+ ......+..+.. +++++.|.|++++++.-.+..|++
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~----------------its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP----------------ITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhh-hhhhccccccCc----------------eeEEEEcCCCcEEEEEcccCeeEE
Confidence 99999999998775 679999999875 444444444443 279999999999999999999999
Q ss_pred EEcCCCCcceEEEeccCcc--eeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCC
Q 010933 407 FSHGVGSAGGITVEAGKNE--NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTT 481 (497)
Q Consensus 407 w~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~ 481 (497)
||++.. .+...+.||+.. +-.-+|.-. +..+ +++|++|++ +|| ..+.++..+.+|.+.|++++|+|..
T Consensus 422 WDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~-~~~f-----iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 422 WDLEEN-KLVRKYFGHKQGHFIIRSCFGGG-NDKF-----IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred eecchh-hHHHHhhcccccceEEEeccCCC-Ccce-----EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 999965 444677777643 444456553 4445 899999999 999 6777888999999999999999976
Q ss_pred -CEEEEEeCCc-eEEEe
Q 010933 482 -NLIACANGNS-LFFHY 496 (497)
Q Consensus 482 -~~la~~~~~~-~~i~~ 496 (497)
.++|+|++|+ +.||.
T Consensus 495 p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWG 511 (519)
T ss_pred HHHhhccCCCCeEEEec
Confidence 4588888655 99995
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-30 Score=212.66 Aligned_cols=276 Identities=18% Similarity=0.271 Sum_probs=217.5
Q ss_pred cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
..+|...|.+++|+.+|..||+|+.|+++++|+++..+. ..-....+|.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------------~~~~~~~gh~---------- 64 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------------RKELVYRGHT---------- 64 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------hhhhcccCCC----------
Confidence 345889999999999999999999999999999987633 3334467888
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
+.|-.++|.| +....|++++.|.+|++||++.+++....
T Consensus 65 --~svdql~w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i-------------------------------------- 103 (313)
T KOG1407|consen 65 --DSVDQLCWDP-KHPDLFATASGDKTIRIWDIRSGKCTARI-------------------------------------- 103 (313)
T ss_pred --cchhhheeCC-CCCcceEEecCCceEEEEEeccCcEEEEe--------------------------------------
Confidence 8899999986 55669999999999999999988754321
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
.. ...-.-+.|+|+|++++.+ .|..|.+.|.+ ..+.... ......+
T Consensus 104 -----------------------~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r-~~~~~~~--------~~~~~e~ 150 (313)
T KOG1407|consen 104 -----------------------ET-KGENINITWSPDGEYIAVGNKDDRITFIDAR-TYKIVNE--------EQFKFEV 150 (313)
T ss_pred -----------------------ec-cCcceEEEEcCCCCEEEEecCcccEEEEEec-ccceeeh--------hccccee
Confidence 11 2222357899999999999 99999999998 3443332 2344567
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
..++|+.++ .+++.....|.|.|.....-+.+ .. +..|.....|+.|+|+|+|+|+|+ |..
T Consensus 151 ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv----~s-------------i~AH~snCicI~f~p~GryfA~GsADAl 212 (313)
T KOG1407|consen 151 NEISWNNSN-DLFFLTNGLGCVEILSYPSLKPV----QS-------------IKAHPSNCICIEFDPDGRYFATGSADAL 212 (313)
T ss_pred eeeeecCCC-CEEEEecCCceEEEEeccccccc----cc-------------cccCCcceEEEEECCCCceEeeccccce
Confidence 788999777 77777777899999888754332 33 345667889999999999999985 699
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
+.+||++. --+++.+..++-++ +.++||.||++||+||+|..|-|=++++|..+ ..+
T Consensus 213 vSLWD~~E-LiC~R~isRldwpV---------------RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~-~eI------ 269 (313)
T KOG1407|consen 213 VSLWDVDE-LICERCISRLDWPV---------------RTLSFSHDGRMLASASEDHFIDIAEVETGDRV-WEI------ 269 (313)
T ss_pred eeccChhH-hhhheeeccccCce---------------EEEEeccCcceeeccCccceEEeEecccCCeE-EEe------
Confidence 99999985 77888888887765 78999999999999999999999999998554 111
Q ss_pred eeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCC
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGN 490 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~ 490 (497)
.++++-..++|||...+||.++++
T Consensus 270 -----------------------------------------~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 270 -----------------------------------------PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred -----------------------------------------eccCCceeEEecCCCceeeEEecC
Confidence 223366688999999999988843
No 54
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-30 Score=212.68 Aligned_cols=295 Identities=13% Similarity=0.128 Sum_probs=229.8
Q ss_pred CCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 104 (497)
Q Consensus 25 ~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 104 (497)
++...+|..+++-+.|+.+|.+|.+++.|....+|-..+|+. +.++.||+
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------------------lGty~GHt------- 52 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------------------LGTYDGHT------- 52 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------------eeeecCCC-------
Confidence 455667999999999999999999999999999999877754 88999999
Q ss_pred ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
+.|+++.. +.+.+++++|+.|.++++||+++|+++...+.+.... ...+...+.+++..
T Consensus 53 -----GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk--------------~~~F~~~gn~~l~~ 111 (327)
T KOG0643|consen 53 -----GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK--------------RVDFSFGGNLILAS 111 (327)
T ss_pred -----ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE--------------EEeeccCCcEEEEE
Confidence 99999999 6788999999999999999999999776544433211 11122222222222
Q ss_pred c---cccCcceEEEeecCCc----cceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC
Q 010933 185 E---WTENMATKIANVGNSV----HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 256 (497)
Q Consensus 185 ~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 256 (497)
. .--.+.+.++++.... ..+|...+ ..+.+.++.+-|.|-++.|++| .||.|.+||++++.+.+..
T Consensus 112 tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s----- 185 (327)
T KOG0643|consen 112 TDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS----- 185 (327)
T ss_pred ehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec-----
Confidence 1 1113367788887543 55666665 5677899999999999999999 9999999999955555543
Q ss_pred CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933 257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 336 (497)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 336 (497)
-+.|...|+.+.++|+. .++++++.|.+-++||.++-+.+ +.+.. ..++++.+++|...
T Consensus 186 --~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~----Kty~t--------------e~PvN~aaisP~~d 244 (327)
T KOG0643|consen 186 --DEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVL----KTYTT--------------ERPVNTAAISPLLD 244 (327)
T ss_pred --hhhhccccccccccCCc-ceEEecccCccceeeeccceeeE----EEeee--------------cccccceecccccc
Confidence 56799999999999999 99999999999999999987665 66655 46899999999887
Q ss_pred EEEEEe--c-CeEEEEecCCC-----------CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 337 HLLSRD--Y-MNLKLWDIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 337 ~l~~~~--~-~~i~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
.++.|. + ..|.-=+.+.+ .+.+.++++|-+++ ++++|+|+|+..++|++||
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI---------------NsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI---------------NSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc---------------ceeEECCCCcccccCCCCc
Confidence 777653 2 33333232220 34577788999876 7999999999999999999
Q ss_pred cEEEEEcCCC
Q 010933 403 LLRIFSHGVG 412 (497)
Q Consensus 403 ~i~vw~~~~~ 412 (497)
.|++.-++..
T Consensus 310 ~VR~h~Fd~~ 319 (327)
T KOG0643|consen 310 YVRLHHFDSN 319 (327)
T ss_pred eEEEEEeccc
Confidence 9999877643
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-30 Score=221.61 Aligned_cols=301 Identities=16% Similarity=0.191 Sum_probs=229.0
Q ss_pred ccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccc
Q 010933 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKT 91 (497)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (497)
++|+..+ ++ ...+..+|++.|+|+.||.+|.+||||+.+|.|+||+..++.. ..
T Consensus 89 flW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-----------------------~~ 142 (399)
T KOG0296|consen 89 FLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-----------------------QW 142 (399)
T ss_pred EEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-----------------------EE
Confidence 4677776 44 6677889999999999999999999999999999999998754 22
Q ss_pred cccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933 92 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 171 (497)
Q Consensus 92 ~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (497)
.+...- +.|.=+.|+ |.+..|++|+.||.+-+|.+.++...+
T Consensus 143 ~~~~e~------------~dieWl~WH--p~a~illAG~~DGsvWmw~ip~~~~~k------------------------ 184 (399)
T KOG0296|consen 143 KLDQEV------------EDIEWLKWH--PRAHILLAGSTDGSVWMWQIPSQALCK------------------------ 184 (399)
T ss_pred Eeeccc------------CceEEEEec--ccccEEEeecCCCcEEEEECCCcceee------------------------
Confidence 222122 447778885 678899999999999999998743221
Q ss_pred cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeE
Q 010933 172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 250 (497)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 250 (497)
. +.+|..++++-.|.|+|+.++++ .||+|++||..+. +.+.
T Consensus 185 ------------------------------------v-~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~ 226 (399)
T KOG0296|consen 185 ------------------------------------V-MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG-QPLH 226 (399)
T ss_pred ------------------------------------E-ecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-ceeE
Confidence 1 27999999999999999999999 9999999999944 4443
Q ss_pred EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933 251 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
.+ -.......+++.++..+ ..++.|+.++.+++-+..+|+.+. .... ........+...+.++.
T Consensus 227 ~~------~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~----~~n~-----~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 227 KI------TQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVN----CNNG-----TVPELKPSQEELDESVE 290 (399)
T ss_pred Ee------cccccCcCCcccccccc-ceeEeccCCccEEEEccccceEEE----ecCC-----CCccccccchhhhhhhh
Confidence 32 11123456788888888 899999999999999988886542 1111 00111112334444444
Q ss_pred E---eeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933 331 F---ANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406 (497)
Q Consensus 331 ~---s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v 406 (497)
+ +..-.+.|+|+ ||+|.|||+.. .++...+. |+..+ +++.|-+ ..+|++++.+|.|+.
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c~-he~~V---------------~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHICE-HEDGV---------------TKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred hcccccccchhhcccccceEEEEeccc-chhheecc-CCCce---------------EEEEEcC-cchheeeccCceEEe
Confidence 4 44556778885 59999999985 55554444 44433 6899998 789999999999999
Q ss_pred EEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 407 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 407 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
||.++|+. ..++.+|..+|..++++| +.+. +++++.|+. +++
T Consensus 353 wDaRtG~l-~~~y~GH~~~Il~f~ls~--~~~~-----vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 353 WDARTGQL-KFTYTGHQMGILDFALSP--QKRL-----VVTVSDDNTALVF 395 (399)
T ss_pred eeccccce-EEEEecCchheeEEEEcC--CCcE-----EEEecCCCeEEEE
Confidence 99999955 499999999999999999 6666 899999988 776
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=9.5e-31 Score=218.75 Aligned_cols=310 Identities=16% Similarity=0.192 Sum_probs=235.4
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|..++.+.+|||||.++|+|+.|-+|+|.|++...... . -.++. .-.+-.....+.+|-.|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~-~~em~-~~~~qa~hPvIRTlYDH~----------- 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---K-PKEMI-SGDTQARHPVIRTLYDHV----------- 172 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---c-hhhhc-cCCcccCCceEeehhhcc-----------
Confidence 3689999999999999999999999999999997321100 0 00000 000000123466777888
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|+++.|+ |....|++++.|++|+++|+.....++-.
T Consensus 173 -devn~l~FH--Pre~ILiS~srD~tvKlFDfsK~saKrA~--------------------------------------- 210 (430)
T KOG0640|consen 173 -DEVNDLDFH--PRETILISGSRDNTVKLFDFSKTSAKRAF--------------------------------------- 210 (430)
T ss_pred -Ccccceeec--chhheEEeccCCCeEEEEecccHHHHHHH---------------------------------------
Confidence 889999995 67789999999999999999765533321
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
+. -....+|.+++|+|.|.+|+.| +-..+++||++ .-+++..- ..-.+|.+.|+
T Consensus 211 ------------------K~--~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvsa----nPd~qht~ai~ 265 (430)
T KOG0640|consen 211 ------------------KV--FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVSA----NPDDQHTGAIT 265 (430)
T ss_pred ------------------HH--hhccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeeec----Cccccccccee
Confidence 11 1335589999999999999999 88999999999 55555431 23568999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccc-cccccEEEEeeCCCEEEEE-ecCe
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI-IASISDIKFANDGQHLLSR-DYMN 345 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~-~~~~ 345 (497)
++.+++.+ ++.++++.||.|++||--+++.+ ..+.. .| ...|.+..|..+|+|++++ -|..
T Consensus 266 ~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv----~t~~~------------AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 266 QVRYSSTG-SLYVTASKDGAIKLWDGVSNRCV----RTIGN------------AHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred EEEecCCc-cEEEEeccCCcEEeeccccHHHH----HHHHh------------hcCCceeeeEEEccCCeEEeecCCcce
Confidence 99999999 99999999999999998887765 33332 11 2579999999999999986 4699
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcceEEEeccCc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
+++|.+.+ ++++.++.+....- .....+...|.....|++.-.+ .+.+.-||.++...+...--+|.+
T Consensus 329 vkLWEi~t-~R~l~~YtGAg~tg----------rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~ 397 (430)
T KOG0640|consen 329 VKLWEIST-GRMLKEYTGAGTTG----------RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG 397 (430)
T ss_pred eeeeeecC-CceEEEEecCCccc----------chhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC
Confidence 99999997 89999987653210 0000145677777778776665 578999999999887777789999
Q ss_pred ceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+++.+.-+|. .+.|.+++.|-. +.|
T Consensus 398 a~R~i~HSP~-------~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 398 AVRWIVHSPV-------EPAFMTCSDDFRARFW 423 (430)
T ss_pred CceEEEeCCC-------CCceeeecccceeeee
Confidence 9999999995 344899999988 999
No 57
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.4e-29 Score=238.84 Aligned_cols=300 Identities=14% Similarity=0.157 Sum_probs=211.7
Q ss_pred hhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc
Q 010933 15 KCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ 94 (497)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (497)
||..+|+....-+ .+-..|.....++++..+++++.+.....|+..++... + ++...+. .+ .....+.
T Consensus 5 k~rh~~g~~~k~~--~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v-~--~~~~~G~-----~~--~~~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPARPD--RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV-L--KHTDYGK-----LA--SNPPILL 72 (493)
T ss_pred cccccccccCCcc--cceeccccccccCCCCCcEeECCceEEEEEecCCceEE-e--ecccccc-----CC--CCCceEe
Confidence 5677777644333 36678888888899777788888888888887654320 0 0000000 00 1122367
Q ss_pred ccCcccccccccccccceeEEEEEecC-CCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccC
Q 010933 95 SHEPEFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 173 (497)
Q Consensus 95 ~h~~~~~~~~~~~~~~~i~~l~~~~s~-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (497)
+|. +.|++++|+ | ++.+|++++.|++|++||+..+.....
T Consensus 73 GH~------------~~V~~v~fs--P~d~~~LaSgS~DgtIkIWdi~~~~~~~~------------------------- 113 (493)
T PTZ00421 73 GQE------------GPIIDVAFN--PFDPQKLFTASEDGTIMGWGIPEEGLTQN------------------------- 113 (493)
T ss_pred CCC------------CCEEEEEEc--CCCCCEEEEEeCCCEEEEEecCCCccccc-------------------------
Confidence 888 999999994 5 678999999999999999976432110
Q ss_pred CCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEE
Q 010933 174 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNI 251 (497)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~ 251 (497)
...++..+ .+|...|.+++|+|++ +.|++| .|+.|++||++ .++....
T Consensus 114 ----------------------------~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~~~~~ 163 (493)
T PTZ00421 114 ----------------------------ISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGKAVEV 163 (493)
T ss_pred ----------------------------cCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCeEEEE
Confidence 01133333 7999999999999975 688888 99999999999 4444443
Q ss_pred eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc-cccEEE
Q 010933 252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIK 330 (497)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~ 330 (497)
+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+ ..+.. |.+ ....+.
T Consensus 164 -------l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~~-------------H~~~~~~~~~ 218 (493)
T PTZ00421 164 -------IKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVEA-------------HASAKSQRCL 218 (493)
T ss_pred -------EcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEec-------------CCCCcceEEE
Confidence 67899999999999999 99999999999999999987644 33333 222 245678
Q ss_pred EeeCCCEEEEEe-----cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcE
Q 010933 331 FANDGQHLLSRD-----YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLL 404 (497)
Q Consensus 331 ~s~~g~~l~~~~-----~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i 404 (497)
|.+++..+++++ ++.|++||++...+++.....+.... +....|++++++|++++ .|+.|
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCCCEEEEEEeCCCeE
Confidence 888877776632 48999999986455555444332211 13567899999999888 49999
Q ss_pred EEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933 405 RIFSHGVGSAGGITVEAGKNENRKPILQAA 434 (497)
Q Consensus 405 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 434 (497)
++||+.++......-..+..+++.+++.|.
T Consensus 285 riwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 285 RCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 999999875543322345567788888774
No 58
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.4e-29 Score=245.39 Aligned_cols=314 Identities=13% Similarity=0.221 Sum_probs=226.9
Q ss_pred CcceEEEEEcCCCCEEEEee--cCCeEEEEEecCCccc-cchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNH-ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~--~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+..|.+|+.+|||..+|||+ .|+.++||+.+.-... ..++. --.+.+.+...|.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~------------~l~k~l~~m~~h~----------- 69 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE------------NLPKHLCTMDDHD----------- 69 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc------------ccchhheeecccc-----------
Confidence 55799999999999999999 9999999997642210 00000 0013455566777
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|+|++| ++||++||+||.|+.|.||.....-....... .
T Consensus 70 -~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs--------------~---------------------- 110 (942)
T KOG0973|consen 70 -GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIGSGTVFGS--------------T---------------------- 110 (942)
T ss_pred -CceeEEEE--CCCCCeEeeccCcceEEEeeecccCCcccccc--------------c----------------------
Confidence 99999999 79999999999999999998764110000000 0
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
++. ..-...++...+ .+|...|..++|+|++.+++++ .|++|.+||..+ ....++ +.+|...|.
T Consensus 111 g~~------~~vE~wk~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~v-------l~~H~s~VK 175 (942)
T KOG0973|consen 111 GGA------KNVESWKVVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKV-------LRGHQSLVK 175 (942)
T ss_pred ccc------cccceeeEEEEE-ecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeee-------eeccccccc
Confidence 000 000123455555 8999999999999999999999 999999999994 466665 889999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-----
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----- 342 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----- 342 (497)
.+.|+|-| ++||+-+.|++|++|++.+-... +.+..+-+ . .....-+..+.|||||++|++..
T Consensus 176 Gvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~----k~It~pf~-~------~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 176 GVSWDPIG-KYFASQSDDRTLKVWRTSDWGIE----KSITKPFE-E------SPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred ceEECCcc-CeeeeecCCceEEEEEcccceee----Eeeccchh-h------CCCcceeeecccCCCcCeecchhhccCC
Confidence 99999999 99999999999999997664333 22222110 0 11134688999999999999852
Q ss_pred cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-----CC------------EEEEEeCCCcEE
Q 010933 343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-----GL------------HFATGSYSNLLR 405 (497)
Q Consensus 343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~------------~l~s~~~dg~i~ 405 (497)
...+.|.+-.+ .+.-..+-+|..++ ..+.|+|. .+ .+|+|+.|+.|.
T Consensus 244 ~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlS 307 (942)
T KOG0973|consen 244 KSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLS 307 (942)
T ss_pred cceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEE
Confidence 26888888765 77778888998865 57889871 11 577899999999
Q ss_pred EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEE
Q 010933 406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIA 485 (497)
Q Consensus 406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la 485 (497)
||.....+.+ ....--+...|.+|+|+|||-.|.
T Consensus 308 VW~T~~~RPl----------------------------------------------~vi~~lf~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 308 VWNTALPRPL----------------------------------------------FVIHNLFNKSIVDMSWSPDGFSLF 341 (942)
T ss_pred EEecCCCCch----------------------------------------------hhhhhhhcCceeeeeEcCCCCeEE
Confidence 9997554332 011112355899999999998888
Q ss_pred EEe-CCceEEEe
Q 010933 486 CAN-GNSLFFHY 496 (497)
Q Consensus 486 ~~~-~~~~~i~~ 496 (497)
+++ ++.++++.
T Consensus 342 acS~DGtV~~i~ 353 (942)
T KOG0973|consen 342 ACSLDGTVALIH 353 (942)
T ss_pred EEecCCeEEEEE
Confidence 888 55577653
No 59
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=7.3e-29 Score=203.34 Aligned_cols=285 Identities=14% Similarity=0.179 Sum_probs=219.1
Q ss_pred cccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933 92 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 171 (497)
Q Consensus 92 ~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (497)
.++||+ .+++.+.| +.+|.+|++++.|.++.+|-..+|+.
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGer-------------------------- 44 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGER-------------------------- 44 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCce--------------------------
Confidence 367898 99999999 78999999999999999998876663
Q ss_pred cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeE
Q 010933 172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 250 (497)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 250 (497)
+-+| .+|++.|+++..+.+.+.+++| .|.++++||++ .++.+.
T Consensus 45 ----------------------------------lGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~la 88 (327)
T KOG0643|consen 45 ----------------------------------LGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQLA 88 (327)
T ss_pred ----------------------------------eeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcEEE
Confidence 3334 8999999999999999999999 99999999999 455554
Q ss_pred EeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-----CCeEEEEEccCCcccccccceecccccccCCcccccccccc
Q 010933 251 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 325 (497)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (497)
.+ ....+|..+.|+++| ++++.+.. .+.|.++|++....- ....++...+..+...
T Consensus 89 ~~--------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~----------~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 89 TW--------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSD----------IDSEEPYLKIPTPDSK 149 (327)
T ss_pred Ee--------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhh----------hcccCceEEecCCccc
Confidence 43 345789999999999 87777654 468999999854311 0011111112234578
Q ss_pred ccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010933 326 ISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 404 (497)
Q Consensus 326 i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 404 (497)
++.+.|.|-+++|++|. +|.|.+||++++.+.+...+.|...+ +++.+++|..++++++.|.+-
T Consensus 150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I---------------nd~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI---------------NDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc---------------ccccccCCcceEEecccCccc
Confidence 99999999999999995 59999999998557777777787754 699999999999999999999
Q ss_pred EEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceec----------------CCCCCccccccc
Q 010933 405 RIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN----------------SSSGHHELSYNL 468 (497)
Q Consensus 405 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw----------------~~~~~~~~~~~~ 468 (497)
++||+.+-+.+ +++ ....|+++.+++|..+.. +..|+.+-..+= ...+......+|
T Consensus 215 kl~D~~tl~v~-Kty-~te~PvN~aaisP~~d~V------ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 215 KLVDVRTLEVL-KTY-TTERPVNTAAISPLLDHV------ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred eeeeccceeeE-EEe-eecccccceecccccceE------EecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 99999987333 333 345799999999964432 233333222221 222445567799
Q ss_pred CCCeEEEEEecCCCEEEEEeCCc-eEE
Q 010933 469 SSKLLHLAWHPTTNLIACANGNS-LFF 494 (497)
Q Consensus 469 ~~~i~~l~~~p~~~~la~~~~~~-~~i 494 (497)
-++|++++|||+|+..++|+.|+ +.+
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEE
Confidence 99999999999999999999776 444
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.8e-29 Score=219.07 Aligned_cols=262 Identities=16% Similarity=0.260 Sum_probs=200.2
Q ss_pred CCcceEEEEEcCCCCE-EEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~-lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
..+.|++++|||...+ +|+.+ .-.+.||+..+... .+++.-..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~-----------------------~k~~srFk------------ 68 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSV-----------------------RKTFSRFK------------ 68 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhh-----------------------hhhHHhhc------------
Confidence 3479999999996543 34433 34799999876432 23333333
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|+++.| ..||++|++|...|.|+++|+.+.....
T Consensus 69 ~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR------------------------------------------ 104 (487)
T KOG0310|consen 69 DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILR------------------------------------------ 104 (487)
T ss_pred cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHH------------------------------------------
Confidence 77999999 5799999999999999999966533222
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
. +.+|+.++..+.|+|+++ .+++| +|+.+++||+. +... +. .+.+|++.|+
T Consensus 105 ------------------~-~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-~a~v-~~------~l~~htDYVR 157 (487)
T KOG0310|consen 105 ------------------Q-LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-TAYV-QA------ELSGHTDYVR 157 (487)
T ss_pred ------------------H-HhhccCceeEEEecccCCeEEEecCCCceEEEEEcC-CcEE-EE------EecCCcceeE
Confidence 1 279999999999999555 55667 89999999999 3333 32 3789999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 347 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 347 (497)
+.+|+|..++++++|+.||.|++||++.... .+.+. .|..+|..+.+-|.|..+++++...++
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-----~v~el------------nhg~pVe~vl~lpsgs~iasAgGn~vk 220 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTS-----RVVEL------------NHGCPVESVLALPSGSLIASAGGNSVK 220 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCc-----eeEEe------------cCCCceeeEEEcCCCCEEEEcCCCeEE
Confidence 9999998768999999999999999997631 22322 245789999999999999999889999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+||+.++++.+..+..|...+ +|+.+..++..|++|+-|+.+++||+.+-+.+ ..+ .-.+||.
T Consensus 221 VWDl~~G~qll~~~~~H~KtV---------------TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv-~s~-~~~~pvL 283 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTV---------------TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV-HSW-KYPGPVL 283 (487)
T ss_pred EEEecCCceehhhhhcccceE---------------EEEEeecCCceEeecccccceEEEEccceEEE-Eee-eccccee
Confidence 999997777777777677654 89999999999999999999999997655222 222 2334555
Q ss_pred eeEeec
Q 010933 428 KPILQA 433 (497)
Q Consensus 428 ~~~~~~ 433 (497)
+++++|
T Consensus 284 siavs~ 289 (487)
T KOG0310|consen 284 SIAVSP 289 (487)
T ss_pred eEEecC
Confidence 555555
No 61
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.3e-29 Score=209.72 Aligned_cols=265 Identities=14% Similarity=0.185 Sum_probs=213.6
Q ss_pred cccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccc
Q 010933 11 SLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYK 90 (497)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (497)
-++|...+. ..+....-+|.++|..+.|.+|+..|++++.|.+|+.||.++++. .
T Consensus 71 I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~-----------------------~ 125 (338)
T KOG0265|consen 71 IVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR-----------------------I 125 (338)
T ss_pred EEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccccee-----------------------e
Confidence 346775442 333344458999999999999999999999999999999999854 7
Q ss_pred ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933 91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 170 (497)
Q Consensus 91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (497)
..+++|. .-|+++.-+ ...-.++.+++.|+++++||++.....++
T Consensus 126 rk~k~h~------------~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t---------------------- 170 (338)
T KOG0265|consen 126 RKHKGHT------------SFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKT---------------------- 170 (338)
T ss_pred ehhcccc------------ceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhc----------------------
Confidence 7788998 778888732 23345666788999999999997664332
Q ss_pred ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceee
Q 010933 171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF 249 (497)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~ 249 (497)
......++++.|..++..+.+| -|+.|++||++ .+...
T Consensus 171 ----------------------------------------~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r-~~d~~ 209 (338)
T KOG0265|consen 171 ----------------------------------------FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR-KNDGL 209 (338)
T ss_pred ----------------------------------------cccceeEEEEEecccccceeeccccCceeeeccc-cCcce
Confidence 2335578999999999999999 99999999998 44455
Q ss_pred EEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEE
Q 010933 250 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 329 (497)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 329 (497)
.+ +.+|.++|+.+..+|+| .++.+-+.|.++++||++........++++.+|.-.. ......+
T Consensus 210 ~~-------lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf---------eknlL~c 272 (338)
T KOG0265|consen 210 YT-------LSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF---------EKNLLKC 272 (338)
T ss_pred EE-------eecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhh---------hhhccee
Confidence 54 78999999999999999 9999999999999999987654444456666632111 1235678
Q ss_pred EEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 330 KFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 330 ~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
+|+|++..+.+| .|..+++||... ...+..+.+|.+.+ ..+.|+|...+|.+++.|.+|++=+
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsv---------------n~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSV---------------NEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eccCCCCccccccccceEEEeeccc-ccEEEEcCCcceeE---------------EEeeecCCCcEEEEeccCceeEeec
Confidence 999999999998 469999999975 78999999999875 6899999999999999999998744
Q ss_pred c
Q 010933 409 H 409 (497)
Q Consensus 409 ~ 409 (497)
+
T Consensus 337 i 337 (338)
T KOG0265|consen 337 I 337 (338)
T ss_pred c
Confidence 3
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.2e-30 Score=208.53 Aligned_cols=243 Identities=19% Similarity=0.337 Sum_probs=200.4
Q ss_pred CcceEEEEEcCC-CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 32 VDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 32 ~~~I~~i~~sp~-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
.+.+..++|+++ .+.+++++.||+++|||+... ..++..++.|. .
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----------------------s~Pi~~~kEH~------------~ 105 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----------------------SKPIHKFKEHK------------R 105 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCC----------------------CcchhHHHhhh------------h
Confidence 678899999995 467888899999999995432 24688899999 7
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.++.|.+ .+++.++++|-|++|++|+....+
T Consensus 106 EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~---------------------------------------------- 138 (311)
T KOG0277|consen 106 EVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPN---------------------------------------------- 138 (311)
T ss_pred heEEecccc-ccceeEEeeccCCceEeecCCCCc----------------------------------------------
Confidence 799999963 567788889999999999987655
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.++++ .+|...|+...|+| .+++++++ .|+.+++||++..++.+. ++.|...|.+
T Consensus 139 --------------Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~~Eil~ 195 (311)
T KOG0277|consen 139 --------------SVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHNSEILC 195 (311)
T ss_pred --------------ceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEeccceeEe
Confidence 33344 89999999999999 67788888 999999999997776554 4678899999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEec-CeE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNL 346 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i 346 (497)
+.|+....+++++|+.|+.|+.||+++-+. .+++ +.+|.-.|..++|||.. .+||+++. -++
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----pl~e-----------L~gh~~AVRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----PLFE-----------LNGHGLAVRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhccc-----ccee-----------ecCCceEEEEEecCcchhhHhhhccccceE
Confidence 999987768999999999999999997642 1222 35677899999999975 56777765 999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~ 409 (497)
||||.......+.+...|...+ ..+.|++ +..++|+++.|..++||+.
T Consensus 260 riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 260 RIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccceeeecc
Confidence 9999986677888888888765 5788887 5779999999999999984
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.9e-30 Score=206.91 Aligned_cols=282 Identities=20% Similarity=0.239 Sum_probs=217.4
Q ss_pred EEEEEcC-CCCEEEEee-------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 36 SAIEFDK-TGDYLAVGD-------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 36 ~~i~~sp-~g~~lasg~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
.++.||| -.++||.+. ..|++.|.+...++- +.+++.-+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g-----------------------i~e~~s~d---------- 58 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG-----------------------IQECQSYD---------- 58 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCC-----------------------eEEEEeee----------
Confidence 6789999 233444432 358899999864321 23332222
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
-++.+..++|+++. ...+++++.||++++||+....
T Consensus 59 ~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~s------------------------------------------- 94 (311)
T KOG0277|consen 59 TEDGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMPS------------------------------------------- 94 (311)
T ss_pred cccceeEeeecCCC-cceEEEEecCceEEEeccCCCC-------------------------------------------
Confidence 22789999997533 4578889999999999943221
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
.++..+ +.|...|.++.|++ +++.++++ -|++|++|+.. .++.+.+ +.+|...
T Consensus 95 ----------------~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~T-------f~gh~~~ 149 (311)
T KOG0277|consen 95 ----------------KPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQT-------FNGHNSC 149 (311)
T ss_pred ----------------cchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEe-------ecCCccE
Confidence 244444 89999999999998 56677777 99999999998 4555554 7899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEE-ec
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DY 343 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~ 343 (497)
|+..+|+|..+++++++|.|+.+++||++..... ..++. |...|.++.|+.-. ..+++| .|
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----~~i~a-------------h~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----MSIEA-------------HNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCCce----eEEEe-------------ccceeEeecccccCCcEEEecCCC
Confidence 9999999998899999999999999999864322 22443 55789999999754 566676 46
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAG 422 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 422 (497)
+.|+.||+++-..++..+.+|.-.+ +.+.|||. ...||+++.|-+++|||...+.....+..-|
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh~~AV---------------Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H 277 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGHGLAV---------------RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH 277 (311)
T ss_pred ceEEEEehhhccccceeecCCceEE---------------EEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc
Confidence 9999999998788999999998764 89999996 4689999999999999999777777788889
Q ss_pred CcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 423 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
..-+..+.+++-..+ . +|+.+=|.. +||+
T Consensus 278 tEFv~g~Dws~~~~~-~-----vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 278 TEFVCGLDWSLFDPG-Q-----VASTGWDELLYVWN 307 (311)
T ss_pred ceEEeccccccccCc-e-----eeecccccceeeec
Confidence 999999999986333 3 688887777 8874
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-29 Score=216.70 Aligned_cols=299 Identities=15% Similarity=0.183 Sum_probs=228.1
Q ss_pred ccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 103 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 103 ~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
+..+.|++.|.++.- . ++.+++++.||.+++||..+...
T Consensus 99 l~~~~hdDWVSsv~~--~--~~~IltgsYDg~~riWd~~Gk~~------------------------------------- 137 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKG--A--SKWILTGSYDGTSRIWDLKGKSI------------------------------------- 137 (423)
T ss_pred cccccchhhhhhhcc--c--CceEEEeecCCeeEEEecCCceE-------------------------------------
Confidence 344555688888876 2 67999999999999999875432
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCc
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 258 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 258 (497)
.++ .+|.++|.+++|.- ....|+++ .|.++++|.++.+....+.. ..
T Consensus 138 ------------------------~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~~ 188 (423)
T KOG0313|consen 138 ------------------------KTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----KV 188 (423)
T ss_pred ------------------------EEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----hH
Confidence 222 79999999888843 33357887 99999999988444333221 12
Q ss_pred cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccc-----cc---ccceecccccccCCccccccccccccEEE
Q 010933 259 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-----DH---SARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
..+|...|.+++..++| ..+++|+.|..|++|+..+...- .. .....+.......+...+.+|..+|.++.
T Consensus 189 ~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred hcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 35999999999999999 99999999999999993321100 00 00011111222334456789999999999
Q ss_pred EeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 331 FANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 331 ~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
|++.+..+-++-|.+|+.||+.+ +..+.++.+.... +++..+|..++|++|+.|..|++||.+
T Consensus 268 w~d~~v~yS~SwDHTIk~WDlet-g~~~~~~~~~ksl----------------~~i~~~~~~~Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 268 WSDATVIYSVSWDHTIKVWDLET-GGLKSTLTTNKSL----------------NCISYSPLSKLLASGSSDRHIRLWDPR 330 (423)
T ss_pred EcCCCceEeecccceEEEEEeec-ccceeeeecCcce----------------eEeecccccceeeecCCCCceeecCCC
Confidence 99854444444579999999998 8888888776654 689999999999999999999999998
Q ss_pred CCC--cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec---CCCCCcccccccCCCeEEEEEecCCCEE
Q 010933 411 VGS--AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTNLI 484 (497)
Q Consensus 411 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~~~~l 484 (497)
++. .+..++-+|.+.|..+.++|. +... |++|+.|+. ++| .+..++....+|..+|.++.|+. +.+|
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~-~~~~-----~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~I 403 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPT-NEFQ-----LVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLI 403 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCC-CceE-----EEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceE
Confidence 753 457889999999999999997 6666 899999999 999 44557888899999999999984 5567
Q ss_pred EEEe-CCceEEEe
Q 010933 485 ACAN-GNSLFFHY 496 (497)
Q Consensus 485 a~~~-~~~~~i~~ 496 (497)
++|+ ++.++||.
T Consensus 404 vSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 404 VSGGADNKLRIFK 416 (423)
T ss_pred EeccCcceEEEec
Confidence 7777 66799885
No 65
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-29 Score=227.79 Aligned_cols=275 Identities=14% Similarity=0.178 Sum_probs=228.3
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+|.++.++ |...+++++-.+|.|.||+.++....+..
T Consensus 14 dRVKsVd~H--PtePw~la~LynG~V~IWnyetqtmVksf---------------------------------------- 51 (794)
T KOG0276|consen 14 DRVKSVDFH--PTEPWILAALYNGDVQIWNYETQTMVKSF---------------------------------------- 51 (794)
T ss_pred CceeeeecC--CCCceEEEeeecCeeEEEecccceeeeee----------------------------------------
Confidence 889999995 67789999999999999999886644321
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.-...+|.+..|-+.-+++++| +|..|++|+..+ ...++. ++.|.+.|++
T Consensus 52 ---------------------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-~ekV~~-------FeAH~DyIR~ 102 (794)
T KOG0276|consen 52 ---------------------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-GEKVKT-------FEAHSDYIRS 102 (794)
T ss_pred ---------------------eecccchhhheeeeccceEEEecCCceEEEEeccc-ceeeEE-------eeccccceee
Confidence 3335578888898888999999 999999999994 445544 8899999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEe-cCeE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD-YMNL 346 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~-~~~i 346 (497)
++.+|.. .+++++|.|-.|++||.+.+-.+. ++| .+|...|++++|+|. .+.+|+++ |++|
T Consensus 103 iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~---qtf-------------eGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 103 IAVHPTL-PYVLTSSDDMTIKLWDWENEWACE---QTF-------------EGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred eeecCCC-CeEEecCCccEEEEeeccCceeee---eEE-------------cCcceEEEEEEecCCCccceeeeeccccE
Confidence 9999998 899999999999999998754331 444 457789999999995 46788875 6999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC--CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
++|.+.. ..+..++++|+..+ +++.+-+. ..+|++|++|..|+|||.++...+ +++++|..
T Consensus 166 KVWslgs-~~~nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV-~TLeGHt~ 228 (794)
T KOG0276|consen 166 KVWSLGS-PHPNFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV-QTLEGHTN 228 (794)
T ss_pred EEEEcCC-CCCceeeeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecchHHHH-HHhhcccc
Confidence 9999986 88999999999876 68998874 469999999999999999998666 99999999
Q ss_pred ceeeeEeecCCCcccccccceeEeeccCc-eecCCC--CCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 425 ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 425 ~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~--~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
.|..+.|.|. .+.+++|++||. ++|+.. .....+.-.-..|.+++-++....+|+|.+.+..+.+
T Consensus 229 Nvs~v~fhp~-------lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 229 NVSFVFFHPE-------LPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred cceEEEecCC-------CcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 9999999995 567999999999 999433 3333344445688999999999999999988866554
No 66
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=9.3e-30 Score=216.77 Aligned_cols=290 Identities=14% Similarity=0.210 Sum_probs=243.0
Q ss_pred CCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccc
Q 010933 80 TSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSS 159 (497)
Q Consensus 80 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 159 (497)
.|..+..++....+.+|. +.|.++++ .|.+++|++++.|++|+|||+.+++++..
T Consensus 134 rPeWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lklt----------- 188 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLT----------- 188 (460)
T ss_pred CccccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEe-----------
Confidence 466678899999999999 99999999 78899999999999999999999986543
Q ss_pred ccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEE
Q 010933 160 ENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRIN 238 (497)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~ 238 (497)
+.+|-..|..+++++...+++++ .|+.|+
T Consensus 189 --------------------------------------------------ltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 189 --------------------------------------------------LTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred --------------------------------------------------ecchhheeeeeeecccCceEEEecCCCeeE
Confidence 27899999999999999999998 999999
Q ss_pred EEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccc
Q 010933 239 LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 318 (497)
Q Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (497)
.||++ ..+.+.- .-+|-..|++++.+|.- ..|++|+.|..+|+||+|+...+ .++.
T Consensus 219 CwDLe-~nkvIR~-------YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V----~~l~----------- 274 (460)
T KOG0285|consen 219 CWDLE-YNKVIRH-------YHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV----HVLS----------- 274 (460)
T ss_pred EEech-hhhhHHH-------hccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE----EEec-----------
Confidence 99999 4554443 67899999999999998 99999999999999999987644 4444
Q ss_pred cccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 010933 319 FTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 397 (497)
Q Consensus 319 ~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 397 (497)
+|..+|..+.+.|-...+++|+ |++|++||++. ++....+..|...+ ++++.+|....+|+
T Consensus 275 --GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv---------------ral~lhP~e~~fAS 336 (460)
T KOG0285|consen 275 --GHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV---------------RALCLHPKENLFAS 336 (460)
T ss_pred --CCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeeccccee---------------eEEecCCchhhhhc
Confidence 4778999999998777788875 59999999997 88888888888754 78999999988998
Q ss_pred EeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCC---Cc--c---ccc
Q 010933 398 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG---HH--E---LSY 466 (497)
Q Consensus 398 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~---~~--~---~~~ 466 (497)
++.| .|+-|++..+..+ ..+.+|..-++.+.... |+ ++++|++.|. ..| ..+. .. . -..
T Consensus 337 as~d-nik~w~~p~g~f~-~nlsgh~~iintl~~ns--D~------v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl 406 (460)
T KOG0285|consen 337 ASPD-NIKQWKLPEGEFL-QNLSGHNAIINTLSVNS--DG------VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSL 406 (460)
T ss_pred cCCc-cceeccCCccchh-hccccccceeeeeeecc--Cc------eEEEcCCceEEEEEecCcCcccccccccccCCcc
Confidence 8886 7899999998766 55999999999999877 33 3688988888 777 2221 11 1 122
Q ss_pred ccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 467 NLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 467 ~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
..+..|.+..|...|..|++|. +..|.+|.
T Consensus 407 ~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 407 ESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ccccceeEEeecccCceEEeccCCcceEEEe
Confidence 4566899999999999999887 66799885
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.7e-30 Score=222.58 Aligned_cols=283 Identities=20% Similarity=0.295 Sum_probs=222.8
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|.+.+..+.|-++...|++|+.|..|++|+....+. ..+.++.|..
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaGs~------------ 219 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAGSL------------ 219 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhccC------------
Confidence 4789999999999988999999999999999887642 5577787777
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|+++.| .+++.++++++.|+.+++|++...+....
T Consensus 220 g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T----------------------------------------- 256 (459)
T KOG0288|consen 220 GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT----------------------------------------- 256 (459)
T ss_pred CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh-----------------------------------------
Confidence 88999999 78999999999999999999998775443
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+.+|++.|+++.|......+++| .|.+|++||+. ...+.+.+ +. ...+..
T Consensus 257 --------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~-k~~C~kt~------l~--~S~cnD 307 (459)
T KOG0288|consen 257 --------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ-KAYCSKTV------LP--GSQCND 307 (459)
T ss_pred --------------------hcccccceeeehhhccccceeeccccchhhhhhhh-hhheeccc------cc--cccccc
Confidence 37999999999998877668899 99999999999 56666542 32 234455
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~ 347 (497)
|+.+ . ..++++-.|++|++||.++.... ...+. .+.|+++..+++|..|.+. -|..+.
T Consensus 308 I~~~--~-~~~~SgH~DkkvRfwD~Rs~~~~----~sv~~--------------gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 308 IVCS--I-SDVISGHFDKKVRFWDIRSADKT----RSVPL--------------GGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred eEec--c-eeeeecccccceEEEeccCCcee----eEeec--------------CcceeeEeeccCCeEEeeecCCCcee
Confidence 5555 3 57899999999999999987654 34443 2579999999999877776 469999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+.|+++ ......+...... +..+.+.+.|||++.|+++||.||.|+||++.+++.+ ..+....
T Consensus 367 viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE-~~l~~s~---- 429 (459)
T KOG0288|consen 367 VIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE-KVLSLST---- 429 (459)
T ss_pred eeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEccCceEE-EEeccCC----
Confidence 999996 6666666544332 2222378999999999999999999999999998544 2222111
Q ss_pred eeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC-CceEEE
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG-NSLFFH 495 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~-~~~~i~ 495 (497)
....|++++|+|.|..|++++. ....+|
T Consensus 430 ----------------------------------------s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 430 ----------------------------------------SNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ----------------------------------------CCcceEEEEEcCCCchhhcccCCcceEec
Confidence 1116889999999999888884 446666
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.1e-28 Score=201.00 Aligned_cols=275 Identities=16% Similarity=0.214 Sum_probs=212.3
Q ss_pred CCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 31 DVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 31 h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
..+.|.+++||| ...++++|+.||+||+|+++.... +. -+....|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------------~~-~ka~~~~~------------ 72 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------------LV-PKAQQSHD------------ 72 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCc--------------------cc-chhhhccC------------
Confidence 468999999999 566777999999999999987311 01 13345566
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|.+++| +.||..+++|+.|+.+++||+.+++...+
T Consensus 73 ~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v----------------------------------------- 109 (347)
T KOG0647|consen 73 GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQV----------------------------------------- 109 (347)
T ss_pred CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeee-----------------------------------------
Confidence 99999999 78999999999999999999999875442
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC--EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
..|..+|.++.|-+... .|++| .|++|+.||.+ ....+.++. ..+.+
T Consensus 110 ---------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-~~~pv~t~~--------LPeRv 159 (347)
T KOG0647|consen 110 ---------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-SSNPVATLQ--------LPERV 159 (347)
T ss_pred ---------------------eecccceeEEEEecCCCcceeEecccccceeecccC-CCCeeeeee--------cccee
Confidence 68999999999976544 89999 99999999999 444554432 23556
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
+++..- . .+++++..++.|.+|+++++....+ ..+. ...-.+++++..+|....+.|+ +|.
T Consensus 160 Ya~Dv~--~-pm~vVata~r~i~vynL~n~~te~k---~~~S------------pLk~Q~R~va~f~d~~~~alGsiEGr 221 (347)
T KOG0647|consen 160 YAADVL--Y-PMAVVATAERHIAVYNLENPPTEFK---RIES------------PLKWQTRCVACFQDKDGFALGSIEGR 221 (347)
T ss_pred eehhcc--C-ceeEEEecCCcEEEEEcCCCcchhh---hhcC------------cccceeeEEEEEecCCceEeeeecce
Confidence 666543 3 5788999999999999987643221 1111 1124689999999988778775 599
Q ss_pred EEEEecCCCC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933 346 LKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 423 (497)
Q Consensus 346 i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 423 (497)
+-+..+.. + +.-.+++.|...-. ..+.+++|.+++|+|.-..|+|+|.||++.+||-+.... ....+.|.
T Consensus 222 v~iq~id~-~~~~~nFtFkCHR~~~~------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~s~~~~ 293 (347)
T KOG0647|consen 222 VAIQYIDD-PNPKDNFTFKCHRSTNS------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKTSETHP 293 (347)
T ss_pred EEEEecCC-CCccCceeEEEeccCCC------CCCceEEecceEeecccceEEEecCCceEEEecchhhhh-hhccCcCC
Confidence 99998875 4 55677888875321 123578889999999999999999999999999776544 47888999
Q ss_pred cceeeeEeecCCCccc
Q 010933 424 NENRKPILQAAPRARR 439 (497)
Q Consensus 424 ~~v~~~~~~~~~~~~~ 439 (497)
.+|.+..|.. +|.+
T Consensus 294 qpItcc~fn~--~G~i 307 (347)
T KOG0647|consen 294 QPITCCSFNR--NGSI 307 (347)
T ss_pred CccceeEecC--CCCE
Confidence 9999999988 5655
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-28 Score=231.42 Aligned_cols=300 Identities=13% Similarity=0.141 Sum_probs=191.8
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc--CccccCC-CCCcccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK--NFMNEHN-PPSFAHGYHLE 185 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~ 185 (497)
+++|+++.| ++||+|||+||.|+.|+||.+...+...+...... +........+ .++.... ...........
T Consensus 267 ~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~---~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 267 KGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSS---CMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred CCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccc---hhhhhhhhccccCcccccccccccccccccc
Confidence 399999999 79999999999999999999976443222111100 0000000011 1111111 00000000000
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
-.....+.+-+.......+++..| .+|.+.|.+++|+.++ +|+++ .|.+|+||++. .+.++++ ..|.+
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~~~CL~~--------F~Hnd 410 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-RKECLKV--------FSHND 410 (712)
T ss_pred ccCCccccCCCccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-CcceeeE--------EecCC
Confidence 001111222222222345567776 8999999999999877 66666 99999999999 7778875 46999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 343 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~- 343 (497)
-|+|++|+|...++|++|+.||.||||++...+.. .|.. ...-|++++|.|||++.+.|+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-----~W~D-------------l~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-----DWND-------------LRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeE-----eehh-------------hhhhheeEEeccCCceEEEEEec
Confidence 99999999987799999999999999999886543 2222 1257999999999999999987
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAG 422 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 422 (497)
|.+++|+... .++...+..+...-. +...-.|+++.|.|. ...|++.+.|.+|+|||..+... ...+++.
T Consensus 473 G~C~fY~t~~-lk~~~~~~I~~~~~K-------k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l-v~KfKG~ 543 (712)
T KOG0283|consen 473 GYCRFYDTEG-LKLVSDFHIRLHNKK-------KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL-VHKFKGF 543 (712)
T ss_pred cEEEEEEccC-CeEEEeeeEeeccCc-------cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhh-hhhhccc
Confidence 9999999974 666655544322110 001112479999974 34688899999999999976533 3666665
Q ss_pred CcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 423 KNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.+.-.....+-..++++ ++++++|.. ++|
T Consensus 544 ~n~~SQ~~Asfs~Dgk~-----IVs~seDs~VYiW 573 (712)
T KOG0283|consen 544 RNTSSQISASFSSDGKH-----IVSASEDSWVYIW 573 (712)
T ss_pred ccCCcceeeeEccCCCE-----EEEeecCceEEEE
Confidence 44333222222224444 455554444 555
No 70
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=9.2e-30 Score=217.19 Aligned_cols=292 Identities=19% Similarity=0.241 Sum_probs=227.9
Q ss_pred chhhhhcCCCCCCCcccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc
Q 010933 14 WKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE 92 (497)
Q Consensus 14 ~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (497)
-|+..+|.++..+..-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+... .+...
T Consensus 48 tKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-----------------------~~~~~ 104 (433)
T KOG0268|consen 48 TKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-----------------------ECIRT 104 (433)
T ss_pred HHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-----------------------hhhhe
Confidence 3577888888888888999999999999976 78999999999999999875 34788
Q ss_pred ccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933 93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 172 (497)
Q Consensus 93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (497)
|++|. +.|..|++. . ..+++++.|++|+.|.++..-
T Consensus 105 f~AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~p---------------------------- 140 (433)
T KOG0268|consen 105 FKAHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGPP---------------------------- 140 (433)
T ss_pred eeccc------------CceeeEEec--c--cceEEecCCcceeeeeccCCc----------------------------
Confidence 99999 999999993 3 689999999999999987521
Q ss_pred CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEe
Q 010933 173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIV 252 (497)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~ 252 (497)
++++ .-...+..+.-+..+..+++| .-.|.|||.+.. .+++.
T Consensus 141 ---------------------------------~~ti--lg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~-~Pv~s- 182 (433)
T KOG0268|consen 141 ---------------------------------LHTI--LGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQRD-NPVSS- 182 (433)
T ss_pred ---------------------------------ceee--ecccccccccccccccccccc-CceeeecccccC-Cccce-
Confidence 1111 112344555555566667766 335899998833 33332
Q ss_pred ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933 253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 332 (497)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 332 (497)
+.--.+.|.++.|+|.....|+++.+|+.|.+||++++..+.+.... -.-+.++|+
T Consensus 183 ------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------------mRTN~Iswn 238 (433)
T KOG0268|consen 183 ------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------------MRTNTICWN 238 (433)
T ss_pred ------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------------------ccccceecC
Confidence 33345789999999988678899999999999999998776432222 245889999
Q ss_pred eCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 333 NDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 333 ~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
|++-.+++|+ |..++.||++.-..++..+.+|...+ .++.|||.|+-+++||.|.+|+||.+..
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred ccccceeeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEeecCC
Confidence 9776666664 59999999998778888888888765 7999999999999999999999999987
Q ss_pred CCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 412 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+......-..--..|.++.++. |.++ +.+|++|+. ++|
T Consensus 304 ~~SRdiYhtkRMq~V~~Vk~S~--Dsky-----i~SGSdd~nvRlW 342 (433)
T KOG0268|consen 304 GHSRDIYHTKRMQHVFCVKYSM--DSKY-----IISGSDDGNVRLW 342 (433)
T ss_pred CcchhhhhHhhhheeeEEEEec--cccE-----EEecCCCcceeee
Confidence 7443222222234677889988 7888 999999999 999
No 71
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=9.3e-28 Score=221.29 Aligned_cols=416 Identities=12% Similarity=0.115 Sum_probs=287.5
Q ss_pred CcccCCcceEEEEEcCCCC---EEEEeecCCeEEEEEecCCccccchhhhhhhccc-CCCCCCccccc----------cc
Q 010933 27 EELQDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNHISRSELEKQMDF-TSTSHPEYRYK----------TE 92 (497)
Q Consensus 27 ~~~~h~~~I~~i~~sp~g~---~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~ 92 (497)
+.-+|++.|.+++|...+. +||+++.|..||||.+.-+.... ..+++..- .+...|.+... ..
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~---~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED---SNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc---ccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 4457999999999997554 88999999999999886433100 00000000 11112222222 33
Q ss_pred ccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933 93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 172 (497)
Q Consensus 93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (497)
+.||+ +.|+++.| .|.+..|+++|.|.++.+|......-+......... .....+.....
T Consensus 263 l~GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe------~gg~a~GF~g~ 322 (764)
T KOG1063|consen 263 LMGHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE------VGGSAGGFWGG 322 (764)
T ss_pred hcCcc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeec------ccccccceeeE
Confidence 45888 99999999 578889999999999999987665322222111111 00112345566
Q ss_pred CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEE
Q 010933 173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI 251 (497)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 251 (497)
.++++..++.+-++ .|..++|.............. .+|...|.+++|.|.|++|++. .|.+-++|-.-..++....
T Consensus 323 lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHE 399 (764)
T KOG1063|consen 323 LWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHE 399 (764)
T ss_pred EEcCCCCEEEEecc--cCcEEEEeccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecccccccceee
Confidence 66777776666666 778899984443333444444 8999999999999999999998 9999999865412222222
Q ss_pred eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcc------c-----c--------------cccc-e
Q 010933 252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL------C-----D--------------HSAR-I 305 (497)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~-----~--------------~~~~-~ 305 (497)
+ ...+-|...++|+++-+.. ..|++|.....+|+|+....-. + . -..+ .
T Consensus 400 i----aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 400 I----ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred e----cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 1 2356688899999999864 7899999999999998864200 0 0 0000 1
Q ss_pred ecccccc----------c---C--------------------CccccccccccccEEEEeeCCCEEEEEe------cCeE
Q 010933 306 LRDAAES----------H---G--------------------SKSFFTEIIASISDIKFANDGQHLLSRD------YMNL 346 (497)
Q Consensus 306 ~~~~~~~----------~---~--------------------~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~~~i 346 (497)
+.+..+. + . ....+-+|...|.+++.+|+|+++|++. ...|
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 1000000 0 0 0013468899999999999999999852 2689
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce---EEEeccC
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGK 423 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~---~~~~~~~ 423 (497)
++|+..+ ....+.+.+|.-.+ +.++|||||++|++.|.|.++.+|+........ ..++.|.
T Consensus 555 ~lw~t~~-W~~~~~L~~HsLTV---------------T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~Ht 618 (764)
T KOG1063|consen 555 RLWNTAN-WLQVQELEGHSLTV---------------TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHT 618 (764)
T ss_pred EEEeccc-hhhhheecccceEE---------------EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccc
Confidence 9999986 77788899998865 799999999999999999999999986643332 3378999
Q ss_pred cceeeeEeecCCCcccccccceeEeeccCc-eecCCCCC----c--ccccccCCCeEEEEEecC-----CCEEEEEeCC-
Q 010933 424 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH----H--ELSYNLSSKLLHLAWHPT-----TNLIACANGN- 490 (497)
Q Consensus 424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~----~--~~~~~~~~~i~~l~~~p~-----~~~la~~~~~- 490 (497)
.-|+...++| +... |+|++.|+. ++|..... + .....+...|+.++|.|- +..+|+|-..
T Consensus 619 RIIWdcsW~p--de~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~G 691 (764)
T KOG1063|consen 619 RIIWDCSWSP--DEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKG 691 (764)
T ss_pred eEEEEcccCc--ccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEeccc
Confidence 9999999999 6665 999999999 99922221 1 146688999999999873 2356777744
Q ss_pred ceEEEe
Q 010933 491 SLFFHY 496 (497)
Q Consensus 491 ~~~i~~ 496 (497)
.|++|.
T Consensus 692 eI~l~~ 697 (764)
T KOG1063|consen 692 EIVLWR 697 (764)
T ss_pred EEEEEe
Confidence 488885
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-28 Score=226.68 Aligned_cols=240 Identities=18% Similarity=0.292 Sum_probs=203.8
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIEE 110 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~ 110 (497)
.+.|+++.|+++|++||+|..+|.|.|||....+. ...+.+ |. .
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----------------------~~~~~~~h~------------~ 261 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----------------------TRTLRGSHA------------S 261 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----------------------cccccCCcC------------c
Confidence 68999999999999999999999999999887643 556666 77 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|-+++| + +..+.+|+.|+.|..+|++..+...
T Consensus 262 rvg~laW--~--~~~lssGsr~~~I~~~dvR~~~~~~------------------------------------------- 294 (484)
T KOG0305|consen 262 RVGSLAW--N--SSVLSSGSRDGKILNHDVRISQHVV------------------------------------------- 294 (484)
T ss_pred eeEEEec--c--CceEEEecCCCcEEEEEEecchhhh-------------------------------------------
Confidence 9999999 3 5688899999999999998766221
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.+ +.+|...|..++|+++++.+++| .|+.+.|||.......+. +..|.+.|.++
T Consensus 295 ----------------~~-~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~--------~~~H~aAVKA~ 349 (484)
T KOG0305|consen 295 ----------------ST-LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT--------FTEHTAAVKAL 349 (484)
T ss_pred ----------------hh-hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE--------EeccceeeeEe
Confidence 11 27899999999999999999999 999999999963333333 67899999999
Q ss_pred EEeCCCCcEEEEEe--CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE---ecC
Q 010933 270 EFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR---DYM 344 (497)
Q Consensus 270 ~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~~ 344 (497)
+|+|-...+||+|+ .|+.|++||..++..+ ..... ...|..+.|++..+-|+++ +++
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdt--------------gsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDT--------------GSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEe----ccccc--------------CCceeeEEEcCCCCEEEEecCCCCC
Confidence 99998778999975 4999999999998765 33332 2689999999998777764 348
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
.|.||+..+ .+.+..+.+|...+ ..++++|||..+++|+.|.++++|++-..
T Consensus 412 ~i~lw~~ps-~~~~~~l~gH~~RV---------------l~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 412 QITLWKYPS-MKLVAELLGHTSRV---------------LYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cEEEEeccc-cceeeeecCCccee---------------EEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999999987 88899999999875 68999999999999999999999999864
No 73
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.1e-28 Score=228.63 Aligned_cols=276 Identities=14% Similarity=0.200 Sum_probs=225.8
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+|..++|+ |...+++++-..|.|++||.+-+.++.
T Consensus 10 sRvKglsFH--P~rPwILtslHsG~IQlWDYRM~tli~------------------------------------------ 45 (1202)
T KOG0292|consen 10 SRVKGLSFH--PKRPWILTSLHSGVIQLWDYRMGTLID------------------------------------------ 45 (1202)
T ss_pred ccccceecC--CCCCEEEEeecCceeeeehhhhhhHHh------------------------------------------
Confidence 789999995 667799999999999999998766433
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
. |..|.++|..++|+|++.++++| +|-.|++|+.. ..+++-+ +.+|-+.|+.
T Consensus 46 ------------------r-FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclft-------L~GHlDYVRt 98 (1202)
T KOG0292|consen 46 ------------------R-FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLFT-------LLGHLDYVRT 98 (1202)
T ss_pred ------------------h-hhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehhh-------hccccceeEE
Confidence 2 27999999999999999999999 99999999999 6667654 8899999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
+.|++.. ..|+++|.|.+|+||+..+++.+ .++.+ |...|+|..|+|...++++++ |-+||
T Consensus 99 ~~FHhey-PWIlSASDDQTIrIWNwqsr~~i----avltG-------------HnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 99 VFFHHEY-PWILSASDDQTIRIWNWQSRKCI----AVLTG-------------HNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred eeccCCC-ceEEEccCCCeEEEEeccCCceE----EEEec-------------CceEEEeeccCCccceEEEecccceEE
Confidence 9999999 89999999999999999998765 55554 678999999999999999986 69999
Q ss_pred EEecCCCCc----------------------------eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933 348 LWDIRMDST----------------------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 348 lwd~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
+||+.--.+ ....+.+|... |+-++|+|.-.+|++|+
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG---------------VNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG---------------VNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc---------------cceEEecCCcceEEecC
Confidence 999852100 01122333332 26799999999999999
Q ss_pred CCCcEEEEEcCCCC-cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCc--ccccccCCCeEEE
Q 010933 400 YSNLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH--ELSYNLSSKLLHL 475 (497)
Q Consensus 400 ~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~--~~~~~~~~~i~~l 475 (497)
+|..|++|.+...+ -+.-+.++|.++|.++.|.|. .. .+.+.++|+. ++|...... .....-...-..+
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~--q~-----lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH--QD-----LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEecCc--cc-----eeEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence 99999999987542 345678999999999999984 22 3788999999 999444332 2233455677889
Q ss_pred EEecCCCEEEEEeCCceEEEe
Q 010933 476 AWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 476 ~~~p~~~~la~~~~~~~~i~~ 496 (497)
+-||..+++|+|-++++.||.
T Consensus 299 aahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 299 AAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred EecCCcceeeeecCCceEEEE
Confidence 999999999999999998884
No 74
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.3e-29 Score=213.67 Aligned_cols=263 Identities=15% Similarity=0.242 Sum_probs=213.8
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|+|+.+ |.+.+++|..|++|+|||..+-.+..
T Consensus 198 kgVYClQY----DD~kiVSGlrDnTikiWD~n~~~c~~------------------------------------------ 231 (499)
T KOG0281|consen 198 KGVYCLQY----DDEKIVSGLRDNTIKIWDKNSLECLK------------------------------------------ 231 (499)
T ss_pred CceEEEEe----cchhhhcccccCceEEeccccHHHHH------------------------------------------
Confidence 77999998 45689999999999999998766433
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
++ .+|++.|.|+.|. .+.+++| .|.+|++||++ +++++++ +.+|...|..
T Consensus 232 ------------------~L-~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-tge~l~t-------lihHceaVLh 282 (499)
T KOG0281|consen 232 ------------------IL-TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-TGEPLNT-------LIHHCEAVLH 282 (499)
T ss_pred ------------------hh-hcCCCcEEeeecc--ceEEEecCCCceEEEEecc-CCchhhH-------HhhhcceeEE
Confidence 22 7999999999985 4589999 99999999999 6777765 7899999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~ 347 (497)
+.|+. .++++++.|..|.+||+.....+ ...++ +.+|...|+.+.|+ .+|++++ +|.+|+
T Consensus 283 lrf~n---g~mvtcSkDrsiaVWdm~sps~i-t~rrV-------------LvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 283 LRFSN---GYMVTCSKDRSIAVWDMASPTDI-TLRRV-------------LVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred EEEeC---CEEEEecCCceeEEEeccCchHH-HHHHH-------------Hhhhhhheeeeccc--cceEEEecCCceEE
Confidence 99985 58999999999999999865421 11123 34577899999997 4699988 469999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
+|++.+ ...++++.+|...+ .+.-..++++++|+.|.+|++||+..|..+ ..+++|...|+
T Consensus 344 vW~~st-~efvRtl~gHkRGI-----------------AClQYr~rlvVSGSSDntIRlwdi~~G~cL-RvLeGHEeLvR 404 (499)
T KOG0281|consen 344 VWSTST-CEFVRTLNGHKRGI-----------------ACLQYRDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVR 404 (499)
T ss_pred EEeccc-eeeehhhhcccccc-----------------eehhccCeEEEecCCCceEEEEeccccHHH-HHHhchHHhhh
Confidence 999987 99999999999754 333347899999999999999999998555 89999999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eecCC--CCC---------cccccccCCCeEEEEEecCCCEEEEEe-CCceEE
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSS--SGH---------HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFF 494 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~--~~~---------~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i 494 (497)
++.|.. +. +++|++||+ ++|.. +.. ......|++.|..+.| |...+++++ ++.+.|
T Consensus 405 ciRFd~----kr-----IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILi 473 (499)
T KOG0281|consen 405 CIRFDN----KR-----IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILI 473 (499)
T ss_pred heeecC----ce-----eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEE
Confidence 999954 33 899999999 99922 211 1235578889999998 455566666 888999
Q ss_pred Ee
Q 010933 495 HY 496 (497)
Q Consensus 495 ~~ 496 (497)
|+
T Consensus 474 Wd 475 (499)
T KOG0281|consen 474 WD 475 (499)
T ss_pred EE
Confidence 96
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-26 Score=194.64 Aligned_cols=274 Identities=17% Similarity=0.220 Sum_probs=214.5
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|+++.| +++|.++++++.|.++++||..++++....
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti---------------------------------------- 52 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTI---------------------------------------- 52 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEe----------------------------------------
Confidence 77999999 789999999999999999999988855432
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
..+...+..++|... ...+.+. .|.+|+..++. ..+.+.. +.+|...|
T Consensus 53 ---------------------~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNkylRY-------F~GH~~~V 103 (311)
T KOG1446|consen 53 ---------------------NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNKYLRY-------FPGHKKRV 103 (311)
T ss_pred ---------------------ecccccccEEEEecCCceEEEccCCCCCceEEEEee-cCceEEE-------cCCCCceE
Confidence 344456667777544 4444444 69999999999 6667765 89999999
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-Ce
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~ 345 (497)
.+++.+|-+ ..+++++.|++|++||+|..+.. ..+.. ..-..++|+|+|-++|++.. +.
T Consensus 104 ~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~---------------~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 104 NSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL---------------SGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec---------------CCCcceeECCCCcEEEEecCCCe
Confidence 999999999 99999999999999999965432 22322 34567899999999999976 69
Q ss_pred EEEEecCCC-CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 346 LKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 346 i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
|++||++.- ..+..++....... + ..+.+.|||||++|+.+...+.+++.|.-+|. +..++..+..
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~----------~--ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs~~~~ 230 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDE----------A--EWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFSGYPN 230 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCc----------c--ceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEeeccC
Confidence 999999864 45666665443211 1 12689999999999999999999999999985 5578877766
Q ss_pred ce---eeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccc-cCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933 425 EN---RKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYN-LSSKLLHLAWHPTTNLIACANGNSLFFH 495 (497)
Q Consensus 425 ~v---~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~-~~~~i~~l~~~p~~~~la~~~~~~~~i~ 495 (497)
.- ...+|+| ++++ +.+|++||. .+| .++.......+ +..++.++.|+|...++|+++. .+-+|
T Consensus 231 ~~~~~~~a~ftP--ds~F-----vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s-~l~fw 300 (311)
T KOG1446|consen 231 AGNLPLSATFTP--DSKF-----VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS-NLVFW 300 (311)
T ss_pred CCCcceeEEECC--CCcE-----EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc-eEEEE
Confidence 54 5667888 8888 899999999 999 55555555566 5789999999999988888754 45555
No 76
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-27 Score=193.12 Aligned_cols=242 Identities=19% Similarity=0.247 Sum_probs=198.7
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 169 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (497)
+..+.+|+ ++|..++| +-+|.+.++++.|++|++|+...+.
T Consensus 10 ~~~l~~~q------------gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~------------------------- 50 (307)
T KOG0316|consen 10 LSILDCAQ------------GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGA------------------------- 50 (307)
T ss_pred ceeecccc------------cceEEEEE--ccCCCEEEEcCCCceEEeecccccc-------------------------
Confidence 45677788 99999999 7899999999999999999998776
Q ss_pred cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCcee
Q 010933 170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 248 (497)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 248 (497)
++++| .+|...|..++.+.|+..|++| .|..+.+||++ +++.
T Consensus 51 -----------------------------------liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv 93 (307)
T KOG0316|consen 51 -----------------------------------LIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKV 93 (307)
T ss_pred -----------------------------------eeeee-cCCCceeeeccccccccccccCCCCceEEEEEcc-cCee
Confidence 45556 8999999999999999999998 99999999999 5555
Q ss_pred eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933 249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 328 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (497)
... +.+|.+.|..++|+.+. ..+++|+.|..+++||.|+... ++++++.. -...|.+
T Consensus 94 ~Rr-------~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde-------------a~D~V~S 150 (307)
T KOG0316|consen 94 DRR-------FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE-------------AKDGVSS 150 (307)
T ss_pred eee-------cccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh-------------hcCceeE
Confidence 543 88999999999999998 9999999999999999997542 22233333 3467888
Q ss_pred EEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933 329 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 407 (497)
Q Consensus 329 ~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw 407 (497)
+..+ +..|++| .||++|.||++. +....-+-+|.- ++++|++|++.++.++.|+++++.
T Consensus 151 i~v~--~heIvaGS~DGtvRtydiR~-G~l~sDy~g~pi-----------------t~vs~s~d~nc~La~~l~stlrLl 210 (307)
T KOG0316|consen 151 IDVA--EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHPI-----------------TSVSFSKDGNCSLASSLDSTLRLL 210 (307)
T ss_pred EEec--ccEEEeeccCCcEEEEEeec-ceeehhhcCCcc-----------------eeEEecCCCCEEEEeeccceeeec
Confidence 8775 5667777 479999999996 776666655543 699999999999999999999999
Q ss_pred EcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 408 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
|-++|+. ....++|.+.-..+.-........ +++|++||. .+|
T Consensus 211 Dk~tGkl-L~sYkGhkn~eykldc~l~qsdth-----V~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 211 DKETGKL-LKSYKGHKNMEYKLDCCLNQSDTH-----VFSGSEDGKVYFW 254 (307)
T ss_pred ccchhHH-HHHhcccccceeeeeeeeccccee-----EEeccCCceEEEE
Confidence 9999854 488999988766665443323333 899999999 999
No 77
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=8.3e-27 Score=219.36 Aligned_cols=375 Identities=13% Similarity=0.109 Sum_probs=275.6
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
+.+.|+++.=+|-=..+|.|..+|+|.|+++..++. +.+|+.-. +
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki-----------------------l~sFk~d~------------g 245 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI-----------------------LMSFKQDW------------G 245 (910)
T ss_pred cccceeEeccCCcceEEEEeccCceEEEEEcccCcE-----------------------EEEEEccc------------c
Confidence 568999999999889999999999999999998864 56665445 8
Q ss_pred ceeEEEEEecCCCCEEE-EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 111 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+|++++| ..||..++ +++..|.+.+||++..+.+....- .+.+.+....+-+...++.+++. |
T Consensus 246 ~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n------------ah~~sv~~~~fl~~epVl~ta~~--D 309 (910)
T KOG1539|consen 246 RVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN------------AHYGSVTGATFLPGEPVLVTAGA--D 309 (910)
T ss_pred ceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeec------------cccCCcccceecCCCceEeeccC--C
Confidence 8999999 56776555 556779999999998776553221 12233444444444445555544 5
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCccCc---------------------
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISD--------------------- 246 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~--------------------- 246 (497)
+.+++|-.+.......+..+..||..+..++.|. .+|..+.++ .|++.+.+++....
T Consensus 310 nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 310 NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFS 389 (910)
T ss_pred CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccc
Confidence 6666666654433322223336888888888886 466666665 66665555432100
Q ss_pred --------------------------------eeeEEee----------cCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933 247 --------------------------------QCFNIVD----------MKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 284 (497)
Q Consensus 247 --------------------------------~~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 284 (497)
....+++ +++..++.....+++++.++.| ++.+.|+.
T Consensus 390 ~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S 468 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYS 468 (910)
T ss_pred hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEecc
Confidence 0001111 1122233344678999999999 99999999
Q ss_pred CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeee
Q 010933 285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKI 363 (497)
Q Consensus 285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~ 363 (497)
.|.|-+|++++|-.. +.+.. -..|..+|+.++...-++.++++ .+|.+++||... ..++..++.
T Consensus 469 ~G~Id~fNmQSGi~r----~sf~~----------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l 533 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHR----KSFGD----------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRL 533 (910)
T ss_pred CCeEEEEEcccCeee----ccccc----------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeecc
Confidence 999999999998543 23321 14577899999999888888886 569999999985 666666654
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccccccc
Q 010933 364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS 443 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 443 (497)
.... ..+..+.....++.+..|-.|+++|+.+. .+...+.+|.+.++.++|+| ++++
T Consensus 534 ~~~~----------------~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~--DgrW---- 590 (910)
T KOG1539|consen 534 GSSI----------------TGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSP--DGRW---- 590 (910)
T ss_pred CCCc----------------ceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCC--CCcE----
Confidence 4432 47888888889999999999999999987 44589999999999999999 8888
Q ss_pred ceeEeeccCc-eec-CCCCCcccccccCCCeEEEEEecCCCEEEEEe--CCceEEEe
Q 010933 444 NLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN--GNSLFFHY 496 (497)
Q Consensus 444 ~l~~~~~d~~-~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~--~~~~~i~~ 496 (497)
+++++.|+. ++| .+.....+......+.+++.|+|+|++||++. .+++|+|.
T Consensus 591 -lisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 591 -LISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -EEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999 999 44456666777889999999999999999998 46799996
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4e-27 Score=207.32 Aligned_cols=269 Identities=17% Similarity=0.263 Sum_probs=203.7
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccc-cchhhhhhhcccCCCCCCcccccccc-cccCcccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNH-ISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSLE 107 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~ 107 (497)
.|.-+|.|++++|++++..+++.+++|.=|++.+++.. .+...-+. .+..+.....- ++|.
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-------~k~~~~~~k~~r~~h~---------- 202 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-------LKSHGNPLKESRKGHV---------- 202 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh-------hhhccCCCCccccccc----------
Confidence 58899999999999999999999999999999988742 11111000 00011111111 2566
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..|.+++. ++|+++|++|+.|..|.||+.++.+.+.
T Consensus 203 --keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~---------------------------------------- 238 (479)
T KOG0299|consen 203 --KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVK---------------------------------------- 238 (479)
T ss_pred --ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhh----------------------------------------
Confidence 77999999 7999999999999999999999876332
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
.+ .+|.+.|.+++|-.....++++ .|+.|++|+++ ....+. ++.+|++.|
T Consensus 239 --------------------~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~ve-------tlyGHqd~v 289 (479)
T KOG0299|consen 239 --------------------VF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVE-------TLYGHQDGV 289 (479)
T ss_pred --------------------cc-cccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHH-------HHhCCccce
Confidence 22 8999999999998877788887 99999999998 444444 388999999
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-Ce
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~ 345 (497)
.++....-+ ..+-+|+.|+++++|++..... .++ .+|.+.+-|++|-.+ ..+++|+| |.
T Consensus 290 ~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----lif-------------rg~~~sidcv~~In~-~HfvsGSdnG~ 349 (479)
T KOG0299|consen 290 LGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LIF-------------RGGEGSIDCVAFIND-EHFVSGSDNGS 349 (479)
T ss_pred eeechhccc-ceEEeccccceeEEEeccccce-----eee-------------eCCCCCeeeEEEecc-cceeeccCCce
Confidence 999988777 6777777999999999954321 223 345678999999855 56777765 99
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
|.+|++.. .+++.+.+...+..+.+-.+..+ +-|++++..|...++|+|+.+|.|++|.+..+
T Consensus 350 IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 350 IALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 99999986 88888776554443322111222 34579999999999999999999999999987
No 79
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1e-26 Score=240.80 Aligned_cols=258 Identities=13% Similarity=0.174 Sum_probs=191.8
Q ss_pred cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+...|.+++|+| ++.+||+|+.||.|+|||+.+++ .+..+.+|.
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----------------------~~~~~~~H~----------- 575 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----------------------LVTEMKEHE----------- 575 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----------------------EEEEecCCC-----------
Confidence 3457899999987 57899999999999999998764 367788998
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|++++|+| +++.+|++++.|++|++||+.++....
T Consensus 576 -~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~----------------------------------------- 612 (793)
T PLN00181 576 -KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIG----------------------------------------- 612 (793)
T ss_pred -CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEE-----------------------------------------
Confidence 8899999953 467899999999999999998765322
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
.+ .. ...+.++.|+ +++..|++| .|+.|++||++........ +.+|...|
T Consensus 613 -------------------~~-~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~-------~~~h~~~V 664 (793)
T PLN00181 613 -------------------TI-KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT-------MIGHSKTV 664 (793)
T ss_pred -------------------EE-ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE-------ecCCCCCE
Confidence 11 22 3468899994 579999999 9999999999844333333 56899999
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
.++.|. ++ ..|++++.|+.|++||++.+..... ......+.+|...+..++|+|++.+|++|+ |+.
T Consensus 665 ~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~-----------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 665 SYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGIN-----------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred EEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccC-----------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence 999997 55 7899999999999999985421000 001112445678899999999999999986 599
Q ss_pred EEEEecCCCCceeeeeeeccc-ccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 346 LKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
|++|+... ..++..+..... .+..+ ........+.+++|+|++.+|++|+.||.|+||++
T Consensus 732 v~iw~~~~-~~~~~s~~~~~~~~~~~~---~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 VFVYHKAF-PMPVLSYKFKTIDPVSGL---EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEECCC-CCceEEEecccCCccccc---ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99999875 444433321111 00000 00001112479999999999999999999999996
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.7e-26 Score=180.90 Aligned_cols=307 Identities=18% Similarity=0.182 Sum_probs=221.0
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+..+..|.+++|+|.|.+.|+|+...+++|-....-.. ++...+ ++...|.. ..+.-+-|.
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~--~r~~he-----a~~~pp~v-~~kr~khhk----------- 89 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID--LRHAHE-----AAKQPPSV-LCKRNKHHK----------- 89 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccC--cccccc-----cccCCCeE-EeeeccccC-----------
Confidence 34678999999999999999999999999876532110 000000 11111111 112223344
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|+|.+| +|+|+++++++.|++|++..++...+...-
T Consensus 90 -gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~g--------------------------------------- 127 (350)
T KOG0641|consen 90 -GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNATG--------------------------------------- 127 (350)
T ss_pred -ccEEEEEe--cCccCeEEecCCCceEEEEecccccccccC---------------------------------------
Confidence 99999999 789999999999999999877654322110
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC----CCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
.... +.-|.+.|..++|.. .+..|+++ .|..|++-|.. .++.++. +.+|
T Consensus 128 ----------------~dle-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~~~~a-------~sgh 182 (350)
T KOG0641|consen 128 ----------------HDLE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQGFHA-------LSGH 182 (350)
T ss_pred ----------------ccee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCCccee-------ecCC
Confidence 0011 268899999999953 45677775 78899999988 5555554 7899
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 341 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 341 (497)
.+-|.++ ++=++ -++++|+.|.+|++||++-...+ .++........ -....|.+++..|.|++|++|
T Consensus 183 tghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v----~~l~~~~~~~g------lessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 183 TGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCV----NTLDNDFHDGG------LESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred cccEEEE-EEecC-cEEEccCCCceEEEEeeecccee----eeccCcccCCC------cccceeEEEEECCCcceeeecc
Confidence 9998887 33345 79999999999999999875443 22221000000 012578999999999999999
Q ss_pred ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC---CcceEE
Q 010933 342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---SAGGIT 418 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~---~~~~~~ 418 (497)
.|....+||++- +++++++..|...+ +++.|+|...||++++.|..|++=|++.. +.....
T Consensus 251 ~dssc~lydirg-~r~iq~f~phsadi---------------r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~v 314 (350)
T KOG0641|consen 251 ADSSCMLYDIRG-GRMIQRFHPHSADI---------------RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMV 314 (350)
T ss_pred CCCceEEEEeeC-CceeeeeCCCccce---------------eEEEeCCCceEEEEecccceEEEeecccchhhcCceEE
Confidence 569999999995 99999999888764 79999999999999999999999998753 222455
Q ss_pred EeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
...|+..+-...|.|. ... |++.+.|.. .+|
T Consensus 315 v~ehkdk~i~~rwh~~--d~s-----fisssadkt~tlw 346 (350)
T KOG0641|consen 315 VAEHKDKAIQCRWHPQ--DFS-----FISSSADKTATLW 346 (350)
T ss_pred EEeccCceEEEEecCc--cce-----eeeccCcceEEEe
Confidence 6678888888888884 222 677777777 777
No 81
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=4.8e-26 Score=202.64 Aligned_cols=378 Identities=11% Similarity=0.106 Sum_probs=264.0
Q ss_pred CcccCCcceEEEEEcCCCCEEEEeecCC--------eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCc
Q 010933 27 EELQDVDIVSAIEFDKTGDYLAVGDRGG--------RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 98 (497)
Q Consensus 27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 98 (497)
.-.+|++.|.|++.+||.-.+|+|...| .++|||..+-. .+..+..-+
T Consensus 99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-----------------------TL~V~g~f~- 154 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-----------------------TLHVIGFFD- 154 (626)
T ss_pred cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-----------------------eeeeecccc-
Confidence 3457999999999999998899887665 59999976532 233344334
Q ss_pred ccccccccccccceeEEEEEecCCCCEEEEE--eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCC-C
Q 010933 99 EFDYLKSLEIEEKINRVRWCAAPNGSMFILS--TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN-P 175 (497)
Q Consensus 99 ~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~--s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 175 (497)
..|.+++|++...|.+++.. +.+..+.+||...+....-.+. .+..+..+.+ +
T Consensus 155 -----------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-------------sne~v~~a~FHP 210 (626)
T KOG2106|consen 155 -----------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-------------SNEVVFLATFHP 210 (626)
T ss_pred -----------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee-------------ccceEEEEEecc
Confidence 78999999876667777765 6788999999987653221110 0111222222 2
Q ss_pred CCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeec
Q 010933 176 PSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM 254 (497)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 254 (497)
.+.+++...+ .+.+.+|+.+.....+....|-+.....|.|++|.++|. +++| .+|.|.||+.. ..+..+.
T Consensus 211 td~nliit~G---k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~k~--- 282 (626)
T KOG2106|consen 211 TDPNLIITCG---KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRISKQ--- 282 (626)
T ss_pred CCCcEEEEeC---CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEEeE---
Confidence 3333333333 678999999988777766666344457899999999995 6678 99999999987 4444443
Q ss_pred CCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc-------cc-ceeccccc---------------
Q 010933 255 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH-------SA-RILRDAAE--------------- 311 (497)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------~~-~~~~~~~~--------------- 311 (497)
...|.+.|.+++...+| .|++|+.|+.|..||-.-.+.... .. .+.+.+.+
T Consensus 283 ----~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 283 ----VHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred ----eeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 23899999999999998 566699999999999322111000 00 01111000
Q ss_pred ccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933 312 SHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390 (497)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 390 (497)
.........+|......++.+|+.+.++++ .|+.+++|+ +.+++.+....... .++.|+|
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~----------------~~~~fhp 417 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN---DHKLEWTKIIEDPA----------------ECADFHP 417 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc---CCceeEEEEecCce----------------eEeeccC
Confidence 000011235788899999999998888776 569999999 26666666555443 4899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--C-CCCCcccc-
Q 010933 391 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--S-SSGHHELS- 465 (497)
Q Consensus 391 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~-~~~~~~~~- 465 (497)
.| .||.|...|...+.|.++... .++.....+++.+.++| +|.+ ||.|+.|+. +++ . .+......
T Consensus 418 sg-~va~Gt~~G~w~V~d~e~~~l--v~~~~d~~~ls~v~ysp--~G~~-----lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 418 SG-VVAVGTATGRWFVLDTETQDL--VTIHTDNEQLSVVRYSP--DGAF-----LAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred cc-eEEEeeccceEEEEeccccee--EEEEecCCceEEEEEcC--CCCE-----EEEecCCCeEEEEEECCCCcEEEEee
Confidence 99 999999999999999998533 44555589999999999 7777 999999999 888 2 22222221
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCc-eEEE
Q 010933 466 YNLSSKLLHLAWHPTTNLIACANGNS-LFFH 495 (497)
Q Consensus 466 ~~~~~~i~~l~~~p~~~~la~~~~~~-~~i~ 495 (497)
..+..+|++++|++|+++|.+.+.|- +..|
T Consensus 488 k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 488 KCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 12238999999999999999988665 5555
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.9e-26 Score=201.56 Aligned_cols=244 Identities=18% Similarity=0.278 Sum_probs=198.6
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...|.++...|....+++|+.|..+.++|...++ .+..|+||. ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------kk 263 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------KK 263 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------eE
Confidence 4688999999988899999999999999987764 488999999 88
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
|+.+.| +++...+++++.|..|++|..........
T Consensus 264 i~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~------------------------------------------- 298 (506)
T KOG0289|consen 264 ITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTS------------------------------------------- 298 (506)
T ss_pred EEEEEe--ccchhheeecCCcceEEeeccccccCccc-------------------------------------------
Confidence 999999 57778999999999999999865442211
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
...|..+|+.+..+|.|++|+++ .|++..+.|++++....... -+...-.+++.+
T Consensus 299 ------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs------~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 299 ------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS------DETSDVEYTSAA 354 (506)
T ss_pred ------------------cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe------eccccceeEEee
Confidence 26899999999999999999999 99999999999444433321 122345689999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lw 349 (497)
|+||| .+|.+|..|+.+++||+.++... .. |.+|.++|..++|+.+|-||+++.| +.|++|
T Consensus 355 fHpDg-Lifgtgt~d~~vkiwdlks~~~~----a~-------------Fpght~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 355 FHPDG-LIFGTGTPDGVVKIWDLKSQTNV----AK-------------FPGHTGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred EcCCc-eEEeccCCCceEEEEEcCCcccc----cc-------------CCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence 99999 99999999999999999886533 22 5568899999999999999999855 889999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
|++. .+..+++...+.. .+.++.|.+.|++|+.++.|=.|++++-.+.
T Consensus 417 DLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 417 DLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred Eehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 9996 6667777655431 1258999999999999988877777764443
No 83
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.5e-26 Score=219.05 Aligned_cols=255 Identities=17% Similarity=0.226 Sum_probs=180.3
Q ss_pred eecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCC-CCEEEE
Q 010933 50 GDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFIL 128 (497)
Q Consensus 50 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~-~~~l~s 128 (497)
|+.++.|++|+.... ..+..+.+|. +.|.+++|+ |+ +.+|++
T Consensus 50 GG~~gvI~L~~~~r~-----------------------~~v~~L~gH~------------~~V~~lafs--P~~~~lLAS 92 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-----------------------PPVIKLKGHT------------SSILDLQFN--PCFSEILAS 92 (568)
T ss_pred CCceeEEEeeecCCC-----------------------ceEEEEcCCC------------CCEEEEEEc--CCCCCEEEE
Confidence 556778888886543 2366788999 899999995 54 679999
Q ss_pred EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeee
Q 010933 129 STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKV 208 (497)
Q Consensus 129 ~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (497)
|+.|++|++||+.++...... ...++..
T Consensus 93 gS~DgtIrIWDi~t~~~~~~~----------------------------------------------------i~~p~~~ 120 (568)
T PTZ00420 93 GSEDLTIRVWEIPHNDESVKE----------------------------------------------------IKDPQCI 120 (568)
T ss_pred EeCCCeEEEEECCCCCccccc----------------------------------------------------cccceEE
Confidence 999999999999754310000 0012222
Q ss_pred eccCCCCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933 209 YPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 286 (497)
Q Consensus 209 ~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 286 (497)
+ .+|...|.+++|+|++..+ +++ .|+.|++||++... .... +. |...|.+++|+|+| .+|++++.|+
T Consensus 121 L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~-------i~-~~~~V~SlswspdG-~lLat~s~D~ 189 (568)
T PTZ00420 121 L-KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQ-------IN-MPKKLSSLKWNIKG-NLLSGTCVGK 189 (568)
T ss_pred e-ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEE-------Ee-cCCcEEEEEECCCC-CEEEEEecCC
Confidence 2 6899999999999988765 677 99999999999443 3322 22 45789999999999 9999999999
Q ss_pred eEEEEEccCCcccccccceecccccccCCccccccccccc-----cEEEEeeCCCEEEEEe-c----CeEEEEecCCCCc
Q 010933 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI-----SDIKFANDGQHLLSRD-Y----MNLKLWDIRMDST 356 (497)
Q Consensus 287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~s~~g~~l~~~~-~----~~i~lwd~~~~~~ 356 (497)
.|+|||+++++.+ ..+.. |.+.+ ....|++++.+|++++ + +.|+|||++...+
T Consensus 190 ~IrIwD~Rsg~~i----~tl~g-------------H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 190 HMHIIDPRKQEIA----SSFHI-------------HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred EEEEEECCCCcEE----EEEec-------------ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence 9999999988654 34444 33333 2334568888888753 3 3799999986566
Q ss_pred eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933 357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 434 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 434 (497)
++..+..+.... .+ ......+++.++++|+.|+.|++|++..+......-..+..+.++++|.|.
T Consensus 253 pl~~~~ld~~~~----------~L---~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 253 ALVTMSIDNASA----------PL---IPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred ceEEEEecCCcc----------ce---EEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 776665443321 00 123334568899999999999999998763222222235678888999885
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.3e-27 Score=196.60 Aligned_cols=322 Identities=16% Similarity=0.200 Sum_probs=237.7
Q ss_pred cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
..+|.+.|+.++-......+.+++.|.+-+||.++++ +++.++.||.
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-----------------------~CL~~Y~GH~---------- 190 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-----------------------ACLATYTGHT---------- 190 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccc-----------------------cceeeecccc----------
Confidence 3479999999999988889999999999999999987 5699999999
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc-CccccCCCCCccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK-NFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 186 (497)
+.|++++| ++.+.++++++.|++..||...-.-.......+. .+++ .....+ . .......++.
T Consensus 191 --GSVNsikf--h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~----------~hSsEeE~e~s-D-e~~~d~d~~~ 254 (481)
T KOG0300|consen 191 --GSVNSIKF--HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS----------DHSSEEEEEHS-D-EHNRDTDSSE 254 (481)
T ss_pred --cceeeEEe--ccccceEEEccCCcchHHHHHhhcCcCCCCCCCC----------CCCchhhhhcc-c-cccccccccc
Confidence 99999999 4678899999999999999732111000000000 0000 000000 0 0000011111
Q ss_pred -ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 187 -TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 187 -~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
+++..|++ ++..+ .+|...|.+..|...|+.++++ .|.+..+||++ .+..+++ +.+|..
T Consensus 255 ~sD~~tiRv----------Pl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-tge~v~~-------LtGHd~ 315 (481)
T KOG0300|consen 255 KSDGHTIRV----------PLMRL-TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-TGEVVNI-------LTGHDS 315 (481)
T ss_pred ccCCceeee----------eeeee-eccccceEehhhhcCcceeeeeeccccceeeeec-cCceecc-------ccCcch
Confidence 11123333 33344 8999999999999999999999 99999999999 6667765 899999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 343 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~ 343 (497)
..+.++-+|.. +++++++.|.+.++||++.. + ..+.+ |.+|...++++.|..+.+ +++|+ |
T Consensus 316 ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea--I-~sV~V-------------FQGHtdtVTS~vF~~dd~-vVSgSDD 377 (481)
T KOG0300|consen 316 ELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA--I-QSVAV-------------FQGHTDTVTSVVFNTDDR-VVSGSDD 377 (481)
T ss_pred hccccccCCcc-eEEEEeccCceeEeccchhh--c-ceeee-------------ecccccceeEEEEecCCc-eeecCCC
Confidence 99999999998 99999999999999999842 1 11233 556788999999987664 56665 5
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc---eEEEe
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVE 420 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~ 420 (497)
.+|++||+++...++.++...... ..++.+..+..|+.--++..|++||+...... ...-+
T Consensus 378 rTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred ceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 999999999878889888766543 58999998899999999999999999754321 22456
Q ss_pred ccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+|...|.+.++.-..+..- |.+++.|.. .-|
T Consensus 442 gHrRMV~c~AW~eehp~cn-----LftcGFDR~v~gW 473 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACN-----LFTCGFDRMVAGW 473 (481)
T ss_pred ccceeeeeeeccccCcccc-----cccccccceeeee
Confidence 8999999999986544333 777777766 556
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=217.38 Aligned_cols=278 Identities=19% Similarity=0.315 Sum_probs=219.1
Q ss_pred cCCcceE---EEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 30 QDVDIVS---AIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 30 ~h~~~I~---~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
+|...|. ++..+. .++||.||+.||.|++|+...... .|+-.+...++.|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~-----------------~~s~~~~asme~Hs-------- 73 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN-----------------EPSTPYIASMEHHS-------- 73 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccC-----------------CcccchhhhhhhhH--------
Confidence 5666666 555554 677899999999999999865432 23334678889999
Q ss_pred cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
+.|+++..+ .+++.|+++|.|-+|++|+...+. .
T Consensus 74 ----DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~-~--------------------------------------- 107 (735)
T KOG0308|consen 74 ----DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDN-T--------------------------------------- 107 (735)
T ss_pred ----hHHhhHHhh--cCCCceEEecCCceEEEeecccCc-c---------------------------------------
Confidence 999999884 678899999999999999987543 0
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEe-CCCCCEEEEE-cCCeEEEEeCccCce-eeEEee-cCCCccC-
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-DDLRINLWNLEISDQ-CFNIVD-MKPSNMD- 260 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~-~~~~~~~- 260 (497)
-|..++ ..|.+.|.|+++ .++...+|+| -|+.|.+||++++.. .....+ +....+.
T Consensus 108 ------------------~c~sti-r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 108 ------------------FCMSTI-RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred ------------------hhHhhh-hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 133333 799999999999 7888888998 999999999994421 111111 1112344
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
++..+|++++.++.| ..|++|+..+.|++||.++++.+ +.. .+|+..|..+..++||..+++
T Consensus 169 G~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~ki------mkL-----------rGHTdNVr~ll~~dDGt~~ls 230 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKI------MKL-----------RGHTDNVRVLLVNDDGTRLLS 230 (735)
T ss_pred CCccceeeeecCCcc-eEEEecCcccceEEeccccccce------eee-----------eccccceEEEEEcCCCCeEee
Confidence 889999999999999 99999999999999999998643 222 457889999999999999988
Q ss_pred E-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE
Q 010933 341 R-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 419 (497)
Q Consensus 341 ~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 419 (497)
+ +||+|++||+.. .+++.++..|...+ +++..+|+=.++++|+.||.|+.=|+.+.... ..+
T Consensus 231 ~sSDgtIrlWdLgq-QrCl~T~~vH~e~V---------------WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tli 293 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQ-QRCLATYIVHKEGV---------------WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLI 293 (735)
T ss_pred cCCCceEEeeeccc-cceeeeEEeccCce---------------EEEeeCCCcceEEecCCCCcEEecccCCchhh-eEe
Confidence 7 679999999997 89999999999865 78999999999999999999999999986333 445
Q ss_pred eccCcceeeeEee
Q 010933 420 EAGKNENRKPILQ 432 (497)
Q Consensus 420 ~~~~~~v~~~~~~ 432 (497)
.....|+..+...
T Consensus 294 ck~daPv~~l~~~ 306 (735)
T KOG0308|consen 294 CKEDAPVLKLHLH 306 (735)
T ss_pred ecCCCchhhhhhc
Confidence 5555566665555
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=7e-27 Score=195.72 Aligned_cols=293 Identities=15% Similarity=0.195 Sum_probs=209.8
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheec----cccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK----IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
+++.+-+| ++||.++++|+.|..|+|.|++....+. +......
T Consensus 113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~q------------------------------- 159 (430)
T KOG0640|consen 113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQ------------------------------- 159 (430)
T ss_pred cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcc-------------------------------
Confidence 88999999 7999999999999999999997532111 1100000
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc--eeeEEeecCCCccCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDDL 262 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~ 262 (497)
.....++++ ..|...|+++.|+|....|++| .|++|++||+.... +..+ ....
T Consensus 160 ---------------a~hPvIRTl-YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K--------~~qd 215 (430)
T KOG0640|consen 160 ---------------ARHPVIRTL-YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFK--------VFQD 215 (430)
T ss_pred ---------------cCCceEeeh-hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHH--------Hhhc
Confidence 011244554 8999999999999999999999 99999999998332 2222 2234
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
..+|.++.|+|.| .+|++|..-..+++||+++-+... .. ..-++|.+.|+++.+++.|++.++|+
T Consensus 216 ~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfv------sa--------nPd~qht~ai~~V~Ys~t~~lYvTaS 280 (430)
T KOG0640|consen 216 TEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFV------SA--------NPDDQHTGAITQVRYSSTGSLYVTAS 280 (430)
T ss_pred cceeeeEeecCCC-ceEEEecCCCceeEEeccceeEee------ec--------CcccccccceeEEEecCCccEEEEec
Confidence 5789999999999 999999999999999999875431 11 01246789999999999999999996
Q ss_pred -cCeEEEEecCCCCceeeeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 343 -YMNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 343 -~~~i~lwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
||.|++||=-. ++++.++.. |.+. . |.+..|..+|+||++.|.|..+++|.+.+++.+.....
T Consensus 281 kDG~IklwDGVS-~rCv~t~~~AH~gs-----------e---vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 281 KDGAIKLWDGVS-NRCVRTIGNAHGGS-----------E---VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred cCCcEEeecccc-HHHHHHHHhhcCCc-----------e---eeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 59999999876 888888853 4332 1 26899999999999999999999999999977643332
Q ss_pred cc-Cc---ceeeeEeecCCCcccccccceeEeecc-Cc-eec---CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933 421 AG-KN---ENRKPILQAAPRARRSSLSNLTRGLYR-QA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 491 (497)
Q Consensus 421 ~~-~~---~v~~~~~~~~~~~~~~~~~~l~~~~~d-~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~ 491 (497)
+. .+ .-....|....+. +..-.+. +. .-| ...+......+|++.++.+.-+|.++.+.+|++|-
T Consensus 346 Ag~tgrq~~rtqAvFNhtEdy-------Vl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 346 AGTTGRQKHRTQAVFNHTEDY-------VLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred CCcccchhhhhhhhhcCccce-------EEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 21 01 1111122221110 1111111 11 445 12223334578999999999999999999999664
Q ss_pred -eEEEe
Q 010933 492 -LFFHY 496 (497)
Q Consensus 492 -~~i~~ 496 (497)
..+|+
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 88886
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-26 Score=212.04 Aligned_cols=269 Identities=17% Similarity=0.234 Sum_probs=200.9
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 115 (497)
Q Consensus 36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l 115 (497)
+-++|+ ..+.||+|.. ..|++|+..+++. ..+..+ ++ +.|+++
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v---------------------~~l~~~--~~------------~~vtSv 223 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSV---------------------TELCSF--GE------------ELVTSV 223 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCce---------------------EEeEec--CC------------CceEEE
Confidence 456777 4557777764 5899999988753 112222 24 789999
Q ss_pred EEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEE
Q 010933 116 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA 195 (497)
Q Consensus 116 ~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (497)
.| +++|.+|+.|..+|.|.|||....+....
T Consensus 224 ~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~----------------------------------------------- 254 (484)
T KOG0305|consen 224 KW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRT----------------------------------------------- 254 (484)
T ss_pred EE--CCCCCEEEEeecCCeEEEEehhhcccccc-----------------------------------------------
Confidence 99 78999999999999999999987653321
Q ss_pred eecCCccceeeeeeccC-CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC
Q 010933 196 NVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 273 (497)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 273 (497)
+ .+ |...|-+++|+ +..+.+| .++.|..+|++.......+ +.+|...|..++|++
T Consensus 255 -------------~-~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 255 -------------L-RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST-------LQGHRQEVCGLKWSP 311 (484)
T ss_pred -------------c-cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh-------hhcccceeeeeEECC
Confidence 1 44 89999999998 6678888 9999999999965554442 788999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEe---cCeEEEE
Q 010933 274 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD---YMNLKLW 349 (497)
Q Consensus 274 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~---~~~i~lw 349 (497)
++ .+||+|+.|+.+.|||....+.. .. +.+|...|.+++|+|- ..+||+|. |+.|++|
T Consensus 312 d~-~~lASGgnDN~~~Iwd~~~~~p~----~~-------------~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 312 DG-NQLASGGNDNVVFIWDGLSPEPK----FT-------------FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred CC-CeeccCCCccceEeccCCCcccc----EE-------------EeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 99 99999999999999999554322 22 3457799999999994 56788863 5999999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe--CCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
|..+ ++.+..+..... |.++.|++..+-|+++. .++.|.||+..+... ...+.+|...|.
T Consensus 374 n~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~-~~~l~gH~~RVl 435 (484)
T KOG0305|consen 374 NTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL-VAELLGHTSRVL 435 (484)
T ss_pred EcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccce-eeeecCCcceeE
Confidence 9986 888877765544 26999999887666543 478999999998633 355666655555
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eec
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.++.+| ++.. +++|+.|.. ++|
T Consensus 436 ~la~SP--dg~~-----i~t~a~DETlrfw 458 (484)
T KOG0305|consen 436 YLALSP--DGET-----IVTGAADETLRFW 458 (484)
T ss_pred EEEECC--CCCE-----EEEecccCcEEec
Confidence 555555 3333 455555554 555
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.4e-25 Score=188.04 Aligned_cols=249 Identities=15% Similarity=0.160 Sum_probs=189.0
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
.+.|+.+.|+|.++.|++++.||++++||...... ...-.|+ .+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l------------------------~~~~~~~------------~p 56 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL------------------------KLKFKHG------------AP 56 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh------------------------hhheecC------------Cc
Confidence 57999999999999999999999999999876432 1122355 88
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
+.+++| .+...+++|+.||.|+.+|+.++....
T Consensus 57 lL~c~F---~d~~~~~~G~~dg~vr~~Dln~~~~~~-------------------------------------------- 89 (323)
T KOG1036|consen 57 LLDCAF---ADESTIVTGGLDGQVRRYDLNTGNEDQ-------------------------------------------- 89 (323)
T ss_pred eeeeec---cCCceEEEeccCceEEEEEecCCccee--------------------------------------------
Confidence 999999 346789999999999999999877332
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
+..|...|.++.+++....+++| .|++|++||.+ ....... + .....|.++.
T Consensus 90 ------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~~~~~-------~-d~~kkVy~~~ 142 (323)
T KOG1036|consen 90 ------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR-NKVVVGT-------F-DQGKKVYCMD 142 (323)
T ss_pred ------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecc-ccccccc-------c-ccCceEEEEe
Confidence 26889999999999987788888 99999999998 3332222 2 2334788887
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lw 349 (497)
.. + +.|++|+.|..+.+||+|+.....+. .. ...+-.+.++++-|++.-++++ -+|+|.+=
T Consensus 143 v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q~----re-----------S~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 143 VS--G-NRLVVGTSDRKVLIYDLRNLDEPFQR----RE-----------SSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred cc--C-CEEEEeecCceEEEEEcccccchhhh----cc-----------ccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 76 4 67999999999999999986533210 00 0112468999999987766665 46988876
Q ss_pred ecCCCC----ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 350 DIRMDS----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 350 d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
.+.. . +....|+.|.... ...+.+++|.+++|+|-.+.+|||+.||.|.+||..+.+.+
T Consensus 205 ~~d~-s~~~~skkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 205 YFDD-SEEAQSKKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred ccCC-chHHhhhceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 6654 3 3445677776532 23345677889999999999999999999999999877443
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=219.86 Aligned_cols=268 Identities=16% Similarity=0.272 Sum_probs=220.8
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
+...+.|..|. +.++++|+.|++|.+||..++. .....+.||. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~----------------------~i~~~l~GH~------------g 250 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGY----------------------LILTRLVGHF------------G 250 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccce----------------------EEEeeccCCC------------C
Confidence 46788899998 5589999999999999998764 2344499999 9
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.++++. ..+.++++|+.|.++++||..++++.
T Consensus 251 ~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~-------------------------------------------- 284 (537)
T KOG0274|consen 251 GVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECT-------------------------------------------- 284 (537)
T ss_pred CceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEE--------------------------------------------
Confidence 99999993 35779999999999999999888744
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
..+ .+|...+.++... +..+++| .|.+|++|+++ .+..+.+ +.+|.++|+++
T Consensus 285 ----------------~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-n~~~l~l-------~~~h~~~V~~v 337 (537)
T KOG0274|consen 285 ----------------HSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-NGACLNL-------LRGHTGPVNCV 337 (537)
T ss_pred ----------------EEe-cCCCceEEEEEcc--CceEeeccCCceEEEEecc-CcceEEE-------eccccccEEEE
Confidence 444 7999999988765 3467777 99999999999 7777776 56799999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~l 348 (497)
..+ + .++++|+.|+.|++||+.+++.+ +.+.+ |...|.++.+.+. ..+++|+ |+.|++
T Consensus 338 ~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~sl~g-------------H~~~V~sl~~~~~-~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 338 QLD--E-PLLVSGSYDGTVKVWDPRTGKCL----KSLSG-------------HTGRVYSLIVDSE-NRLLSGSLDTTIKV 396 (537)
T ss_pred Eec--C-CEEEEEecCceEEEEEhhhceee----eeecC-------------CcceEEEEEecCc-ceEEeeeeccceEe
Confidence 998 5 78999999999999999987665 55444 6789999988765 7888875 599999
Q ss_pred EecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec-cCcce
Q 010933 349 WDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-GKNEN 426 (497)
Q Consensus 349 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v 426 (497)
||+++ . +++..+.+|...+ -.....+++|++++.|+.|++||..+++.+ ..+++ |...+
T Consensus 397 Wdl~~-~~~c~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~-~~~~~~~~~~v 457 (537)
T KOG0274|consen 397 WDLRT-KRKCIHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAEEGECL-RTLEGRHVGGV 457 (537)
T ss_pred ecCCc-hhhhhhhhcCCcccc-----------------cccccccceeEeccccccEEEeecccCcee-eeeccCCcccE
Confidence 99997 6 8999999998854 233346789999999999999999998665 77777 67888
Q ss_pred eeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 427 RKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
..+++.. . .+++++.++. ++|
T Consensus 458 ~~l~~~~----~-----~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 458 SALALGK----E-----EILCSSDDGSVKLW 479 (537)
T ss_pred EEeecCc----c-----eEEEEecCCeeEEE
Confidence 8887751 1 2788888888 999
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.7e-26 Score=189.88 Aligned_cols=294 Identities=16% Similarity=0.208 Sum_probs=206.0
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 169 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (497)
+..|++|. +.|++++| +.||++|++++.|++|++|++++...+..
T Consensus 79 ~~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------------------- 123 (420)
T KOG2096|consen 79 VSVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEH--------------------- 123 (420)
T ss_pred hhhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhh---------------------
Confidence 56788999 88999999 78999999999999999999987553321
Q ss_pred cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCc-
Q 010933 170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISD- 246 (497)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~- 246 (497)
++++.. -.-+..+.+.|+||.+.++.. ...++++|.+....
T Consensus 124 ----------------------------------r~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 124 ----------------------------------RCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred ----------------------------------hHhhcc--ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 122211 112245678999999887765 78899999775211
Q ss_pred --eeeEEeecCCC-ccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 247 --QCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 247 --~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
.....+..... --..|+..+..+-...++ .+|++++.|..|.+|+++ |+.+ ..+.. ..
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L----~~idt-------------nq 228 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLL----QSIDT-------------NQ 228 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Ccee----eeecc-------------cc
Confidence 11111111111 123466777788777777 999999999999999999 6544 22222 12
Q ss_pred ccccEEEEeeCCCEEEEEec-CeEEEEecCC--CC-----ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE
Q 010933 324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DS-----TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 395 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 395 (497)
..-+..+.||+|++++++.. -.|++|.+-. ++ +.+..+++|...+ +.++|+++...+
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV---------------~~~aFsn~S~r~ 293 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV---------------LAAAFSNSSTRA 293 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe---------------eeeeeCCCccee
Confidence 34567889999999999876 8899998642 12 2456788998865 789999999999
Q ss_pred EEEeCCCcEEEEEcCCCC----cc------eEEEeccCcceeeeEeecCCCcccccccceeEeeccCceec--CCCCCcc
Q 010933 396 ATGSYSNLLRIFSHGVGS----AG------GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN--SSSGHHE 463 (497)
Q Consensus 396 ~s~~~dg~i~vw~~~~~~----~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw--~~~~~~~ 463 (497)
++.|.||+++|||.+-.- .. ...+.+..+.-..+..+| .++. ||.......+++ ..++...
T Consensus 294 vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP--~g~~-----lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 294 VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP--SGDS-----LAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred EEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCC--CCcE-----EEeecCCceEEEEcccCccch
Confidence 999999999999975421 10 112223333444777888 5555 666655544665 2222222
Q ss_pred c-ccccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933 464 L-SYNLSSKLLHLAWHPTTNLIACANGNSLFFH 495 (497)
Q Consensus 464 ~-~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~ 495 (497)
. -..|+..|.+++|+|+|+++|++++..+.++
T Consensus 367 ~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 367 ELEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred hHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 2 3458899999999999999999999887765
No 91
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2e-27 Score=193.06 Aligned_cols=243 Identities=14% Similarity=0.219 Sum_probs=199.3
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|....++.+...-|+++.|-+-+|||.-++.. +.+| +|
T Consensus 56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgde-----------------------lhsf-------------~h 99 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE-----------------------LHSF-------------EH 99 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh-----------------------hhhh-------------hh
Confidence 36999999999999999999999999999999888743 3333 23
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.-|.+++| +.|..+|++|+.+..+||||++..+...
T Consensus 100 khivk~~af--~~ds~~lltgg~ekllrvfdln~p~App----------------------------------------- 136 (334)
T KOG0278|consen 100 KHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPP----------------------------------------- 136 (334)
T ss_pred hheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCc-----------------------------------------
Confidence 366999999 7899999999999999999997654211
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
.. +.+|++.|..+.|....+.|+++ +|++|++||.+ .+..++.+ ....+|+
T Consensus 137 ------------------~E-~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-Tgt~v~sL--------~~~s~Vt 188 (334)
T KOG0278|consen 137 ------------------KE-ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-TGTEVQSL--------EFNSPVT 188 (334)
T ss_pred ------------------hh-hcCCCCcceeEEEeccCceEEeeccCCceEEEEec-cCcEEEEE--------ecCCCCc
Confidence 11 27999999999999988899998 99999999999 55555543 2457899
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i 346 (497)
++.++++| . +++....+.|.+||..+-..+ +.++. ...|.+.+++|+...+++|. |..+
T Consensus 189 SlEvs~dG-~-ilTia~gssV~Fwdaksf~~l----Ks~k~--------------P~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 189 SLEVSQDG-R-ILTIAYGSSVKFWDAKSFGLL----KSYKM--------------PCNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred ceeeccCC-C-EEEEecCceeEEeccccccce----eeccC--------------ccccccccccCCCceEEecCcceEE
Confidence 99999998 5 455566778999999987655 44444 24689999999998888874 5999
Q ss_pred EEEecCCCCceeeee-eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 347 KLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
+.||..+ +..+..+ ++|.+++ .++.|+|||...++||+||+|++|.+..++.
T Consensus 249 ~kfDy~T-geEi~~~nkgh~gpV---------------hcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 249 YKFDYNT-GEEIGSYNKGHFGPV---------------HCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EEEeccC-CceeeecccCCCCce---------------EEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999998 7778776 8888876 7999999999999999999999999887644
No 92
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.3e-25 Score=215.08 Aligned_cols=219 Identities=14% Similarity=0.137 Sum_probs=163.9
Q ss_pred cccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
..+|.+.|++++|+| ++++||+|+.|++|+|||+.++... ......+..+.+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~----------------~~~~~~l~~L~gH~--------- 125 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT----------------QNISDPIVHLQGHT--------- 125 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc----------------cccCcceEEecCCC---------
Confidence 346999999999999 8899999999999999998764210 00113456788998
Q ss_pred ccccceeEEEEEecCC-CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 107 EIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..|.+++|+ |+ +.+|++++.|++|+|||+.+++..
T Consensus 126 ---~~V~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg~~~--------------------------------------- 161 (493)
T PTZ00421 126 ---KKVGIVSFH--PSAMNVLASAGADMVVNVWDVERGKAV--------------------------------------- 161 (493)
T ss_pred ---CcEEEEEeC--cCCCCEEEEEeCCCEEEEEECCCCeEE---------------------------------------
Confidence 889999995 54 368999999999999999876522
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
..+ .+|...|.+++|+|+|..|+++ .|+.|++||+++ ++.... +.+|..
T Consensus 162 ---------------------~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~t-------l~~H~~ 211 (493)
T PTZ00421 162 ---------------------EVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSS-------VEAHAS 211 (493)
T ss_pred ---------------------EEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEE-------EecCCC
Confidence 222 6888999999999999999999 999999999994 444443 456665
Q ss_pred C-eEEEEEeCCCCcEEEEEe----CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 265 V-ITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 265 ~-i~~~~~~~~~~~~l~~~~----~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
. ...+.|.+++ ..+++++ .|+.|++||+++..... .....+ +...+....|++++++|+
T Consensus 212 ~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~---~~~~~d------------~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 212 AKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPY---STVDLD------------QSSALFIPFFDEDTNLLY 275 (493)
T ss_pred CcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCce---eEeccC------------CCCceEEEEEcCCCCEEE
Confidence 4 4567889887 6666654 47999999998754221 111110 123455677899999888
Q ss_pred EEe--cCeEEEEecCCCCceeeeee
Q 010933 340 SRD--YMNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 340 ~~~--~~~i~lwd~~~~~~~~~~~~ 362 (497)
+++ |+.|++||+.. ++++....
T Consensus 276 lggkgDg~Iriwdl~~-~~~~~~~~ 299 (493)
T PTZ00421 276 IGSKGEGNIRCFELMN-ERLTFCSS 299 (493)
T ss_pred EEEeCCCeEEEEEeeC-CceEEEee
Confidence 763 69999999986 66665543
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.3e-26 Score=209.42 Aligned_cols=361 Identities=14% Similarity=0.134 Sum_probs=239.7
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 115 (497)
Q Consensus 36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l 115 (497)
.++.|++....|.+...|..|+|||+...+. ......+-.|. ..|+++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~k--------------------vgk~~s~lyHS------------~ciW~V 375 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNK--------------------VGKCSSMLYHS------------ACIWDV 375 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEecccccc--------------------ccceeeeeecc------------ceeeee
Confidence 4788999999999999999999999987543 01123344566 667777
Q ss_pred EEEe----cCC-----CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCc-ccccccc
Q 010933 116 RWCA----APN-----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF-AHGYHLE 185 (497)
Q Consensus 116 ~~~~----s~~-----~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (497)
.-.| ++. ...|.+++.|++|++|+++.+..-.+..-+.. +.......+..+. ..+...
T Consensus 376 e~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil-----------s~~l~ki~y~d~~~q~~~d~- 443 (1080)
T KOG1408|consen 376 ENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL-----------SANLSKIPYEDSTQQIMHDA- 443 (1080)
T ss_pred ccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc-----------hhhhhcCccccCchhhhhhc-
Confidence 6544 111 23589999999999999986321111000000 0000000000000 000000
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
..-++|-. .... ......+.+++++|+|++|++| .-|.+++|++.... ... .++.|+.
T Consensus 444 -----~~~~fdka-------~~s~-~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~-------~~eAHes 502 (1080)
T KOG1408|consen 444 -----SAGIFDKA-------LVST-CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-YTC-------FMEAHES 502 (1080)
T ss_pred -----cCCccccc-------chhh-cCcccceEEEEECCCcceecccCccCceEEEEehhhh-hhh-------heecccc
Confidence 00011111 0000 2345578999999999999999 99999999998333 222 2689999
Q ss_pred CeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC---CEEE
Q 010933 265 VITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLL 339 (497)
Q Consensus 265 ~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~ 339 (497)
.|.++.|+.. +.++||+++.|+.|++||+...-.. ..++.+|...|+++.|--+| ++|-
T Consensus 503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l----------------~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL----------------VQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred eeEEEeecCchhhhHhhhhccCCceEEEEecccccch----------------hhhhcccccceeEEEEeecCCceEEEe
Confidence 9999999853 2378999999999999998643211 22356678999999998877 3444
Q ss_pred EEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE
Q 010933 340 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 419 (497)
Q Consensus 340 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 419 (497)
+|.|..|.+--.+. ..-...+..|.... .... +++++..|..+++++++.|.+|+||++++++.. +.+
T Consensus 567 cGADksimFr~~qk-~~~g~~f~r~t~t~-------~ktT---lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~F 634 (1080)
T KOG1408|consen 567 CGADKSIMFRVNQK-ASSGRLFPRHTQTL-------SKTT---LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSF 634 (1080)
T ss_pred ccCchhhheehhcc-ccCceecccccccc-------ccce---EEEeeeCCCcceEEEEecccceEEEecccccee-eee
Confidence 56666665443332 22222232232221 1112 369999999999999999999999999999665 666
Q ss_pred ec---cCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCce
Q 010933 420 EA---GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSL 492 (497)
Q Consensus 420 ~~---~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~ 492 (497)
++ |.+..-.+..-| .+-+ +|+...|+. .++ .+++....+.+|...|+.|.|.+|-+.|++++ ++.|
T Consensus 635 Kgs~~~eG~lIKv~lDP--SgiY-----~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 635 KGSRDHEGDLIKVILDP--SGIY-----LATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred cccccCCCceEEEEECC--CccE-----EEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceE
Confidence 65 334455555655 3444 899999988 666 88889999999999999999999999988877 5569
Q ss_pred EEEe
Q 010933 493 FFHY 496 (497)
Q Consensus 493 ~i~~ 496 (497)
|||.
T Consensus 708 FvW~ 711 (1080)
T KOG1408|consen 708 FVWK 711 (1080)
T ss_pred EEEE
Confidence 9996
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.9e-26 Score=188.85 Aligned_cols=268 Identities=13% Similarity=0.135 Sum_probs=202.3
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCch-heeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|.+|+|+| ....+++++|.|++||+|+++.. ....
T Consensus 28 DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~----------------------------------------- 65 (347)
T KOG0647|consen 28 DSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVP----------------------------------------- 65 (347)
T ss_pred cchheeEecc-ccCceEEecccCCceEEEEEecCCcccc-----------------------------------------
Confidence 8899999965 24456668899999999999863 3211
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
+-...|.++|.+++|+.+|..+++| .|+.+++||+. .++..+ +..|.++|.
T Consensus 66 -------------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-S~Q~~~--------v~~Hd~pvk 117 (347)
T KOG0647|consen 66 -------------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-SGQVSQ--------VAAHDAPVK 117 (347)
T ss_pred -------------------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-CCCeee--------eeeccccee
Confidence 0025889999999999999999999 99999999999 556555 568999999
Q ss_pred EEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCe
Q 010933 268 SAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 345 (497)
Q Consensus 268 ~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~ 345 (497)
.+.|-+.. -..|++||.|++|+.||+|....+ ..+.. .+.++++..- ..+++.+ .++.
T Consensus 118 t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----~t~~L--------------PeRvYa~Dv~--~pm~vVata~r~ 177 (347)
T KOG0647|consen 118 TCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----ATLQL--------------PERVYAADVL--YPMAVVATAERH 177 (347)
T ss_pred EEEEecCCCcceeEecccccceeecccCCCCee----eeeec--------------cceeeehhcc--CceeEEEecCCc
Confidence 99998765 138999999999999999976544 33332 1345555443 2355555 5699
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC-CcceEEEeccCc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-SAGGITVEAGKN 424 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~-~~~~~~~~~~~~ 424 (497)
|.+|+++.+....+.+...-. +.+++++..+|....+.|+-+|++.|..++.+ .....+++.|+.
T Consensus 178 i~vynL~n~~te~k~~~SpLk--------------~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLK--------------WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred EEEEEcCCCcchhhhhcCccc--------------ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence 999999764333333332211 12368999999888899999999999999874 233477888873
Q ss_pred ---------ceeeeEeecCCCcccccccceeEeeccCc-eecCCC--CCcccccccCCCeEEEEEecCCCEEEEEe
Q 010933 425 ---------ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS--GHHELSYNLSSKLLHLAWHPTTNLIACAN 488 (497)
Q Consensus 425 ---------~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~--~~~~~~~~~~~~i~~l~~~p~~~~la~~~ 488 (497)
.|++++|.|. .. .|++.|+||. ..|... ..+.....+..+|++.+|+.+|.++|.+.
T Consensus 244 ~~~~~~~VYaVNsi~FhP~--hg-----tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPV--HG-----TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCCCCCceEEecceEeecc--cc-----eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 6788999983 33 3899999999 999433 34555678999999999999999999876
No 95
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4e-27 Score=198.35 Aligned_cols=244 Identities=16% Similarity=0.258 Sum_probs=205.2
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc-ccCccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~ 108 (497)
-+.++|.|+.||.|...||+|+.||.|++|.+.+|. ++..|. +|+
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~-----------------------ClRrFdrAHt----------- 306 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ-----------------------CLRRFDRAHT----------- 306 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecch-----------------------HHHHhhhhhc-----------
Confidence 468999999999999999999999999999999984 466665 898
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|+++.| +.|+..+++++.|.++++.-+.+|++.+
T Consensus 307 -kGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LK----------------------------------------- 342 (508)
T KOG0275|consen 307 -KGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLK----------------------------------------- 342 (508)
T ss_pred -cCeeEEEE--ccCcchhhcccccceEEEeccccchhHH-----------------------------------------
Confidence 88999999 7899999999999999999998887443
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
.+ .+|++.|+...|.++|..++++ .||+|++|+.. ...+..++. ..+...+|.
T Consensus 343 -------------------Ef-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K-tteC~~Tfk-----~~~~d~~vn 396 (508)
T KOG0275|consen 343 -------------------EF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK-TTECLSTFK-----PLGTDYPVN 396 (508)
T ss_pred -------------------Hh-cCccccccceEEcCCCCeEEEecCCccEEEecCc-chhhhhhcc-----CCCCcccce
Confidence 33 8999999999999999999999 99999999999 566766532 334567888
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i 346 (497)
++..-|..+..++++...+++++.++.. +.+ +.|..-. -..+...+.+.||.|+++.+. .|+.+
T Consensus 397 sv~~~PKnpeh~iVCNrsntv~imn~qG-QvV----rsfsSGk----------REgGdFi~~~lSpkGewiYcigED~vl 461 (508)
T KOG0275|consen 397 SVILLPKNPEHFIVCNRSNTVYIMNMQG-QVV----RSFSSGK----------REGGDFINAILSPKGEWIYCIGEDGVL 461 (508)
T ss_pred eEEEcCCCCceEEEEcCCCeEEEEeccc-eEE----eeeccCC----------ccCCceEEEEecCCCcEEEEEccCcEE
Confidence 9998888878999999999999999864 333 3333200 012567788899999999885 67999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
+.|...+ +++-.++..|+..+ ..++-+|..+.||+-++||.+++|.
T Consensus 462 YCF~~~s-G~LE~tl~VhEkdv---------------IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 462 YCFSVLS-GKLERTLPVHEKDV---------------IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEeec-Cceeeeeecccccc---------------cccccCcccchhhhhcccchhhhcC
Confidence 9999987 89999999998754 5899999999999999999999995
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.6e-26 Score=189.72 Aligned_cols=240 Identities=18% Similarity=0.303 Sum_probs=186.0
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|.++|+|+|.+ |.|+|+|+.|-+|+|||.....+ +..+-.|.
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-----------------------lg~ll~Ha------------ 83 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-----------------------LGILLSHA------------ 83 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------------hcceeccc------------
Confidence 489999999986 88999999999999999987654 66777888
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|+++.|.+......|++|+.||.|.+|++....
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--------------------------------------------- 118 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--------------------------------------------- 118 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCCeE---------------------------------------------
Confidence 99999999542233489999999999999987654
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
++..+ ++|...|+.++++|.|++.++- .|+.+++||+-. ++...+.+ .....+.
T Consensus 119 ---------------~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~-Gr~a~v~~--------L~~~at~ 173 (362)
T KOG0294|consen 119 ---------------LLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR-GRVAFVLN--------LKNKATL 173 (362)
T ss_pred ---------------Eeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhc-Cccceeec--------cCCccee
Confidence 33344 8999999999999999988886 999999999984 44333322 2223345
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~ 347 (497)
+.|+|.| .+++.+..+ .|-+|.+.+..+. ...+. ...+.++.|. ++..|++| +++.|+
T Consensus 174 v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~--------------~~r~l~~~~l-~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 174 VSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIEN--------------PKRILCATFL-DGSELLVGGDNEWIS 232 (362)
T ss_pred eEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhc--------------cccceeeeec-CCceEEEecCCceEE
Confidence 9999999 878877766 5889998875433 22222 1246777776 45566666 559999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEE--EcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--VSGDGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
+||... ..+...+.+|...+. ++. -.|++.+|+++|.||.|+|||++...
T Consensus 233 ~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 233 LKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 999986 899999999998652 444 35678999999999999999998763
No 97
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.9e-25 Score=211.94 Aligned_cols=254 Identities=14% Similarity=0.176 Sum_probs=175.6
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
.+.+++|+.... .++..+ .+|...|.+++|+|+ +..|++| .|+.|++||+...+.....+......+.+|...|
T Consensus 53 ~gvI~L~~~~r~---~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 53 IGAIRLENQMRK---PPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred eeEEEeeecCCC---ceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 345677776542 344554 899999999999996 7899999 9999999999743321111000001367899999
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
.+++|+|++..+|++++.|+.|++||+++++.. ..+. |...|.+++|+|+|.+|++++ |+.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i~--------------~~~~V~SlswspdG~lLat~s~D~~ 190 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----FQIN--------------MPKKLSSLKWNIKGNLLSGTCVGKH 190 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----EEEe--------------cCCcEEEEEECCCCCEEEEEecCCE
Confidence 999999998445689999999999999987543 2221 125699999999999999875 699
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC----cEEEEEcCCCCcceEEEe-
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----LLRIFSHGVGSAGGITVE- 420 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg----~i~vw~~~~~~~~~~~~~- 420 (497)
|+|||+++ ++.+.++.+|.+.+... .++...|++++.+|++++.|+ .|+|||+++.......+.
T Consensus 191 IrIwD~Rs-g~~i~tl~gH~g~~~s~----------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 191 MHIIDPRK-QEIASSFHIHDGGKNTK----------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred EEEEECCC-CcEEEEEecccCCceeE----------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence 99999997 88888899998753110 012345678999999988774 799999996433333332
Q ss_pred -ccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC-CCCc--ccccccCCCeEEEEEecCCC
Q 010933 421 -AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS-SGHH--ELSYNLSSKLLHLAWHPTTN 482 (497)
Q Consensus 421 -~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~-~~~~--~~~~~~~~~i~~l~~~p~~~ 482 (497)
.+.+.+......+ ++.+ +++|..|+. ++|.. .+.. .....+..++..++|.|+..
T Consensus 260 d~~~~~L~p~~D~~--tg~l-----~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 260 DNASAPLIPHYDES--TGLI-----YLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cCCccceEEeeeCC--CCCE-----EEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 2223222222222 4555 889999998 99922 2221 12234567888999998753
No 98
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-24 Score=200.29 Aligned_cols=326 Identities=14% Similarity=0.167 Sum_probs=242.0
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...|.|+||+.+.+.||.+-.||.|-||++..+ +-....+.+++. ..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~----------------------w~~~~vi~g~~d-----------rs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN----------------------WFLEPVIHGPED-----------RS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC----------------------ceeeEEEecCCC-----------Cc
Confidence 479999999999999999999999999999763 344566777763 88
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
|.+++|+ ++..|++.+.+|.|.-||+.+.+.+..
T Consensus 72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~------------------------------------------- 105 (691)
T KOG2048|consen 72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYN------------------------------------------- 105 (691)
T ss_pred eeeEEEc---cCCeEEeecCCceEEEEecccCceeEE-------------------------------------------
Confidence 9999994 577899999999999999998774432
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
+ ....+.|++++.+|.+..++.| +||.++.++.....-.++. .+...++.|.+++
T Consensus 106 -----------------~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l~rq~sRvLsls 161 (691)
T KOG2048|consen 106 -----------------I-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SLMRQKSRVLSLS 161 (691)
T ss_pred -----------------e-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ecccccceEEEEE
Confidence 1 4556789999999999999999 9998888877733333333 2555679999999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lw 349 (497)
|+|++ ..++.|+.||.|++||...+.... ........... .-..-|+++.|-.++ .|++|+. |.|++|
T Consensus 162 w~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~----~~~~~~d~l~k-----~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 162 WNPTG-TKIAGGSIDGVIRIWDVKSGQTLH----IITMQLDRLSK-----REPTIVWSVLFLRDS-TIASGDSAGTVTFW 230 (691)
T ss_pred ecCCc-cEEEecccCceEEEEEcCCCceEE----Eeeeccccccc-----CCceEEEEEEEeecC-cEEEecCCceEEEE
Confidence 99999 889999999999999999886542 11110000000 012457778777555 6778865 999999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc---eEEEeccCcce
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG---GITVEAGKNEN 426 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~~~~~~v 426 (497)
|... +.+++.+..|...+ .+++..+++.+++++|.|+.|.-|...++... ......|..-+
T Consensus 231 d~~~-gTLiqS~~~h~adV---------------l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 231 DSIF-GTLIQSHSCHDADV---------------LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV 294 (691)
T ss_pred cccC-cchhhhhhhhhcce---------------eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence 9986 99999999998865 68999999999999999999999998876442 23345677777
Q ss_pred eeeEeecCCCcccccccceeEeeccCc-----------------------------------eec--------CCCCC--
Q 010933 427 RKPILQAAPRARRSSLSNLTRGLYRQA-----------------------------------HEN--------SSSGH-- 461 (497)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~d~~-----------------------------------~iw--------~~~~~-- 461 (497)
++++.... .+.+|+.|.. .+| ..+..
T Consensus 295 rs~av~~~---------~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~ 365 (691)
T KOG2048|consen 295 RSMAVIEN---------ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVIL 365 (691)
T ss_pred eeeeeecc---------eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccc
Confidence 77777652 1444444432 222 11100
Q ss_pred ---------cccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 462 ---------HELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 462 ---------~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
......-...|.+-+.||+|+.||.++-..++||.
T Consensus 366 ~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 366 QGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYR 409 (691)
T ss_pred ccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEE
Confidence 01112335588999999999999999977777664
No 99
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.2e-25 Score=205.78 Aligned_cols=406 Identities=13% Similarity=0.120 Sum_probs=258.4
Q ss_pred cCCcceEEEEEcCCCC---EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 30 QDVDIVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~---~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
+|..+|+|+.+-|+.+ ++++|+.|+.|++|.++.. ....+.++++|.
T Consensus 52 GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~---------------------~~~~i~~~~g~~--------- 101 (764)
T KOG1063|consen 52 GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDE---------------------YLIKIYTIQGHC--------- 101 (764)
T ss_pred CCccceEEEEEcccccccceEEEccCCCcEEEEEEeeh---------------------heEEEEeecCcc---------
Confidence 7999999999999887 8999999999999999843 235677888888
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCC--Cccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--SFAHGYHL 184 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 184 (497)
..+.++.- ......+.+.|+++.+|+.+..++.......... ..--+......+ ...+++.+
T Consensus 102 ---~~~~cv~a----~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~---------k~~ipLcL~~~~~~~~~lla~G 165 (764)
T KOG1063|consen 102 ---KECVCVVA----RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEI---------KEAIPLCLAALKNNKTFLLACG 165 (764)
T ss_pred ---eeEEEEEe----eeeEEEeeccCceEEEeecCCCceeeehheehhh---------hhHhhHHHhhhccCCcEEEEec
Confidence 44444432 1122333379999999999555422111111100 001111111112 12222333
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC---EEEEE-cCCeEEEEeCccCc--------------
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE---TFVSA-DDLRINLWNLEISD-------------- 246 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~~~-~d~~i~iwd~~~~~-------------- 246 (497)
+. +..+.++.-. ......+..+ .+|.+.|.+++|...+. +++++ .|..|+||.+...+
T Consensus 166 gs--~~~v~~~s~~-~d~f~~v~el-~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~ 241 (764)
T KOG1063|consen 166 GS--KFVVDLYSSS-ADSFARVAEL-EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTL 241 (764)
T ss_pred Cc--ceEEEEeccC-CcceeEEEEe-eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccc
Confidence 22 3344444444 2222333334 89999999999976443 66777 99999999876433
Q ss_pred ------eeeEEee--cCC-CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCc-----------cccc-----
Q 010933 247 ------QCFNIVD--MKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-----------LCDH----- 301 (497)
Q Consensus 247 ------~~~~~~~--~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------~~~~----- 301 (497)
.....+. +.. .-+.+|++.|+++.|+|.+ ..|++++.|.++-+|...+.. .-..
T Consensus 242 ~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~ 320 (764)
T KOG1063|consen 242 SNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW 320 (764)
T ss_pred cCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeeccccccccee
Confidence 0110010 000 1245999999999999999 899999999999999765431 1000
Q ss_pred ------------------ccceecc-cccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCC--------
Q 010933 302 ------------------SARILRD-AAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRM-------- 353 (497)
Q Consensus 302 ------------------~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~-------- 353 (497)
-.+.|.. .+..-.......+|...|..++|+|.|++|++. .|-+-|+|-.-.
T Consensus 321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi 400 (764)
T KOG1063|consen 321 GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI 400 (764)
T ss_pred eEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee
Confidence 0011110 000011223457899999999999999998885 456666653320
Q ss_pred --C------------------------Cceeeeeeecccccc------cccc----------------------------
Q 010933 354 --D------------------------STPVATFKIHEHLRP------KLCD---------------------------- 373 (497)
Q Consensus 354 --~------------------------~~~~~~~~~~~~~~~------~~~~---------------------------- 373 (497)
+ .+.++.++.....+. ..|+
T Consensus 401 aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~ 480 (764)
T KOG1063|consen 401 ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETN 480 (764)
T ss_pred cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccc
Confidence 0 001111110000000 0000
Q ss_pred ----------------------------------------cCCCCCccceeEEEEcCCCCEEEEEeCCC-----cEEEEE
Q 010933 374 ----------------------------------------LYNNDSIFDKFECSVSGDGLHFATGSYSN-----LLRIFS 408 (497)
Q Consensus 374 ----------------------------------------~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-----~i~vw~ 408 (497)
+|+ -.+.+++++.+|+++++|+++... .|++|+
T Consensus 481 ~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG--HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~ 558 (764)
T KOG1063|consen 481 TGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG--HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWN 558 (764)
T ss_pred cccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc--CceeEEEEEecCCCCEEeehhhhCCccceEEEEEe
Confidence 111 123478999999999999998754 499999
Q ss_pred cCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCc------ccccccCCCeEEEEEecCC
Q 010933 409 HGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH------ELSYNLSSKLLHLAWHPTT 481 (497)
Q Consensus 409 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~------~~~~~~~~~i~~l~~~p~~ 481 (497)
..+-... +.+++|.-.|+.++|+| ++++ |.+.+.|.. .+|...+.. .....|++-|.+.+|+|++
T Consensus 559 t~~W~~~-~~L~~HsLTVT~l~FSp--dg~~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 559 TANWLQV-QELEGHSLTVTRLAFSP--DGRY-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred ccchhhh-heecccceEEEEEEECC--CCcE-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 9887554 68999999999999999 8888 999999999 999332221 2256799999999999999
Q ss_pred CEEEEEe-CCceEEEe
Q 010933 482 NLIACAN-GNSLFFHY 496 (497)
Q Consensus 482 ~~la~~~-~~~~~i~~ 496 (497)
.++|+++ +..+.||.
T Consensus 631 ~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWE 646 (764)
T ss_pred ceeEEecCCceEEEEe
Confidence 9999999 66799985
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.2e-26 Score=201.71 Aligned_cols=265 Identities=15% Similarity=0.233 Sum_probs=196.5
Q ss_pred ccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
+.|.+.|+.+.+.|+. .++|+++..+.|.|||..+-.-. +....+..+-..+.+|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-------------~~~~~~~~Pdl~L~gH~---------- 177 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-------------PKASGECRPDLRLKGHE---------- 177 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-------------ccccccCCCceEEEeec----------
Confidence 4689999999999954 67788889999999999764320 00000345566788998
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..=++|+|.+ .....|++++.|++|.+||+........
T Consensus 178 --~eg~glsWn~-~~~g~Lls~~~d~~i~lwdi~~~~~~~~--------------------------------------- 215 (422)
T KOG0264|consen 178 --KEGYGLSWNR-QQEGTLLSGSDDHTICLWDINAESKEDK--------------------------------------- 215 (422)
T ss_pred --cccccccccc-ccceeEeeccCCCcEEEEeccccccCCc---------------------------------------
Confidence 4467899964 4456899999999999999976542100
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCcc-CceeeEEeecCCCccCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 264 (497)
...+... +.+|...|..++|++.. .+|+++ +|+.+.|||.++ ..+..+ ...+|.+
T Consensus 216 --------------~~~p~~~-~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~-------~~~ah~~ 273 (422)
T KOG0264|consen 216 --------------VVDPKTI-FSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH-------SVKAHSA 273 (422)
T ss_pred --------------cccceEE-eecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc-------cccccCC
Confidence 0012223 38999999999999854 455666 999999999995 222222 3678999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE-e
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-D 342 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~-~ 342 (497)
.|.+++|+|-+...||+||.|++|++||+|+-... ...+ .+|...|.++.|+|... .||++ +
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~-------------e~H~dev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHTF-------------EGHEDEVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---ceec-------------cCCCcceEEEEeCCCCCceeEeccc
Confidence 99999999988789999999999999999985432 2333 45778999999999765 45554 6
Q ss_pred cCeEEEEecCCCCc-------------eeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEE
Q 010933 343 YMNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFS 408 (497)
Q Consensus 343 ~~~i~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~ 408 (497)
|+.+.+||+..-+. ++..-.||...+ ..+.|+|+.. .|++.++|+.+.||+
T Consensus 338 D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV---------------~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 338 DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV---------------SDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred CCcEEEEeccccccccChhhhccCCcceeEEecCccccc---------------ccccCCCCCCeEEEEecCCceEEEee
Confidence 79999999965332 234445666544 6899999765 577899999999999
Q ss_pred cCC
Q 010933 409 HGV 411 (497)
Q Consensus 409 ~~~ 411 (497)
+..
T Consensus 403 ~s~ 405 (422)
T KOG0264|consen 403 MAE 405 (422)
T ss_pred ccc
Confidence 874
No 101
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.1e-24 Score=193.95 Aligned_cols=352 Identities=14% Similarity=0.177 Sum_probs=238.7
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
..-|.|+.|.++|+ ++||..+|.|.||+..+.+. .+....|+ +.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-----------------------~k~~~aH~------------gg 289 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI-----------------------SKQVHAHD------------GG 289 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-----------------------EeEeeecC------------Cc
Confidence 47899999999998 56999999999999866532 34444888 99
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
|.+++.. .+| .|++|+.|+.|..||-.-.+...++--... .++.+....... ++.+.. .+.
T Consensus 290 v~~L~~l--r~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~-------------G~iRtv~e~~~d-i~vGTt--rN~ 350 (626)
T KOG2106|consen 290 VFSLCML--RDG-TLLSGGKDRKIILWDDNYRKLRETELPEQF-------------GPIRTVAEGKGD-ILVGTT--RNF 350 (626)
T ss_pred eEEEEEe--cCc-cEeecCccceEEeccccccccccccCchhc-------------CCeeEEecCCCc-EEEeec--cce
Confidence 9999984 555 566799999999999322222211111111 111111111111 111110 112
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
|-.-.++.. ...+. .+|....+.++.+|+.+.++++ .|+.+++|+ + .+..... ....+..++.
T Consensus 351 iL~Gt~~~~----f~~~v-~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d~~~~~~ 414 (626)
T KOG2106|consen 351 ILQGTLENG----FTLTV-QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIEDPAECAD 414 (626)
T ss_pred EEEeeecCC----ceEEE-EecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecCceeEee
Confidence 222222211 11111 5899999999999999999998 999999999 3 2322222 2457889999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw 349 (497)
|+|.| .+|.|+..|...+.|.++..++ ..-.. ..++++|.|+|+|.+||.|+ |+.|+||
T Consensus 415 fhpsg--~va~Gt~~G~w~V~d~e~~~lv----~~~~d--------------~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 415 FHPSG--VVAVGTATGRWFVLDTETQDLV----TIHTD--------------NEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred ccCcc--eEEEeeccceEEEEecccceeE----EEEec--------------CCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 99997 8999999999999999985433 22111 36899999999999999996 5999999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe---------
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--------- 420 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~--------- 420 (497)
.+..++........+... .++.+.||+|+++|.+-+.|-.|..|. ..........+
T Consensus 475 ~Vs~~g~~y~r~~k~~gs--------------~ithLDwS~Ds~~~~~~S~d~eiLyW~-~~~~~~~ts~kDvkW~t~~c 539 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGS--------------PITHLDWSSDSQFLVSNSGDYEILYWK-PSECKQITSVKDVKWATYTC 539 (626)
T ss_pred EECCCCcEEEEeeeecCc--------------eeEEeeecCCCceEEeccCceEEEEEc-cccCcccceecceeeeeeEE
Confidence 998767666665544431 137999999999999999999999994 33222211111
Q ss_pred ---------ccCcceeeeEeecCCCcccccccceeEeeccCc-eecC-----CCCCcccccccCCCeEEEEEecCCCEEE
Q 010933 421 ---------AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS-----SSGHHELSYNLSSKLLHLAWHPTTNLIA 485 (497)
Q Consensus 421 ---------~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~-----~~~~~~~~~~~~~~i~~l~~~p~~~~la 485 (497)
.+...++.++.+. ...+ +|+|.+.|. +++. ......+..+|+..|++++|..+...|.
T Consensus 540 ~lGF~v~g~s~~t~i~a~~rs~--~~~~-----lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li 612 (626)
T KOG2106|consen 540 TLGFEVFGGSDGTDINAVARSH--CEKL-----LASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLI 612 (626)
T ss_pred EEEEEEecccCCchHHHhhhhh--hhhh-----hhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEE
Confidence 2233344444443 3444 899999998 8882 2344556789999999999998777766
Q ss_pred EEe-CCceEEEe
Q 010933 486 CAN-GNSLFFHY 496 (497)
Q Consensus 486 ~~~-~~~~~i~~ 496 (497)
+.+ +..++.|.
T Consensus 613 ~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 613 STGKDTSIMQWR 624 (626)
T ss_pred ecCCCceEEEEE
Confidence 655 66799885
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.2e-26 Score=201.66 Aligned_cols=286 Identities=17% Similarity=0.239 Sum_probs=200.7
Q ss_pred ccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCC
Q 010933 95 SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHN 174 (497)
Q Consensus 95 ~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (497)
.+...++..+.+.|++.|+.+++.| .+...+++.+..+.|.|||.....-........
T Consensus 110 ~~~~~v~i~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~--------------------- 167 (422)
T KOG0264|consen 110 AVSGKVEISQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGEC--------------------- 167 (422)
T ss_pred ccccceEEEEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccC---------------------
Confidence 4444455555677779999999975 444567777899999999987543221110011
Q ss_pred CCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEe
Q 010933 175 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIV 252 (497)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 252 (497)
.+..+ +.+|...-++++|++. .-.|++| .|+.|++||+......-..+
T Consensus 168 -----------------------------~Pdl~-L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~ 217 (422)
T KOG0264|consen 168 -----------------------------RPDLR-LKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV 217 (422)
T ss_pred -----------------------------CCceE-EEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc
Confidence 11112 2688887888999884 3356666 99999999998544321111
Q ss_pred ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933 253 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 332 (497)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 332 (497)
.+...+.+|+..|..++|++....+|++++.|+.+.|||+|++. .+..+. ..+|.+.++|++|+
T Consensus 218 -~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--~~~~~~-------------~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 218 -DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--SKPSHS-------------VKAHSAEVNCVAFN 281 (422)
T ss_pred -cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--CCCccc-------------ccccCCceeEEEeC
Confidence 11123789999999999999887899999999999999999731 111122 24577899999999
Q ss_pred eCCC-EEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEc
Q 010933 333 NDGQ-HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 333 ~~g~-~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~ 409 (497)
|-+. +||+|+ |++|++||+++..+++.++.+|...+ .++.|+|. ...||+++.|+++.|||+
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev---------------~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV---------------FQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcce---------------EEEEeCCCCCceeEecccCCcEEEEec
Confidence 9655 566665 79999999998888999999999865 69999996 468889999999999999
Q ss_pred CCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEE-EEEe
Q 010933 410 GVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLI-ACAN 488 (497)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~l-a~~~ 488 (497)
..-......-.+..+| .+++..-.+|...|..++|+|..+.+ ++++
T Consensus 347 s~ig~eq~~eda~dgp---------------------------------pEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGP---------------------------------PELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred cccccccChhhhccCC---------------------------------cceeEEecCcccccccccCCCCCCeEEEEec
Confidence 8643331111111111 12233345788899999999999875 4455
Q ss_pred -CCceEEEe
Q 010933 489 -GNSLFFHY 496 (497)
Q Consensus 489 -~~~~~i~~ 496 (497)
++.+.||.
T Consensus 394 eDN~LqIW~ 402 (422)
T KOG0264|consen 394 EDNILQIWQ 402 (422)
T ss_pred CCceEEEee
Confidence 44588886
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.3e-25 Score=184.55 Aligned_cols=272 Identities=14% Similarity=0.184 Sum_probs=211.6
Q ss_pred EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCE
Q 010933 46 YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSM 125 (497)
Q Consensus 46 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~ 125 (497)
.|++|++...|.-+++.-.+. +| .....|.+..+-.+++|. ++|++++. ++.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~----------~~-~~s~~~~l~~lF~~~aH~------------~sitavAV----s~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPK----------GC-TDSVKPTLKPLFAFSAHA------------GSITALAV----SGPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcc----------cc-ccccceeeeccccccccc------------cceeEEEe----ccee
Confidence 367888887777777654321 11 122345556677788998 99999998 4789
Q ss_pred EEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcccee
Q 010933 126 FILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARC 205 (497)
Q Consensus 126 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (497)
+++||.|.+|+|||+........
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~--------------------------------------------------------- 78 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGI--------------------------------------------------------- 78 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence 99999999999999987663321
Q ss_pred eeeeccCCCCCeeEEEeCCCCC--EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE
Q 010933 206 QKVYPHAHDFNINSISNNSDCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 282 (497)
Q Consensus 206 ~~~~~~~h~~~v~~~~~~~~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 282 (497)
+-.|.+.|+++.|.+.-. .|++| +||.|.+|+.. .=.++.. +.+|.+.|+.++.+|.+ ++.++.
T Consensus 79 ----ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~s-------lK~H~~~Vt~lsiHPS~-KLALsV 145 (362)
T KOG0294|consen 79 ----LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKS-------LKAHKGQVTDLSIHPSG-KLALSV 145 (362)
T ss_pred ----eeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeee-------ecccccccceeEecCCC-ceEEEE
Confidence 157899999999988664 88888 99999999988 4455554 78999999999999999 999999
Q ss_pred eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeee
Q 010933 283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~ 362 (497)
+.|+.+++||+-.|+.- .+... ......+.|+|.|.+++.+....|-+|.+.+ .+....+.
T Consensus 146 g~D~~lr~WNLV~Gr~a----~v~~L--------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~-A~v~~~i~ 206 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVA----FVLNL--------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDN-ASVFREIE 206 (362)
T ss_pred cCCceeeeehhhcCccc----eeecc--------------CCcceeeEEcCCCCEEEEEeccEEEEEeccc-HhHhhhhh
Confidence 99999999999887643 22222 1234559999999999888778999999985 66655554
Q ss_pred ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccc
Q 010933 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 442 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 442 (497)
..... .++.|- ++..|++|++|+.|.+||.++. .....+.+|.+.|..+.+-....+.+
T Consensus 207 ~~~r~----------------l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~--- 265 (362)
T KOG0294|consen 207 NPKRI----------------LCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEY--- 265 (362)
T ss_pred ccccc----------------eeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCCceE---
Confidence 44221 245554 6778999999999999999885 44589999999999999666556666
Q ss_pred cceeEeeccCc-eec
Q 010933 443 SNLTRGLYRQA-HEN 456 (497)
Q Consensus 443 ~~l~~~~~d~~-~iw 456 (497)
|+++++||. +||
T Consensus 266 --lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 266 --LVTASSDGFIKVW 278 (362)
T ss_pred --EEEeccCceEEEE
Confidence 999999999 999
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.2e-25 Score=207.52 Aligned_cols=273 Identities=14% Similarity=0.186 Sum_probs=222.8
Q ss_pred cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
.-+|...|..+++.+.. .+++++.||++++|+-..++ +.....+.+|.
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~---------------------~l~~~~~~~~~---------- 57 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ---------------------YLETHAFEGPK---------- 57 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcc---------------------cccceecccCc----------
Confidence 34688999888887654 78899999999999976543 33445577777
Q ss_pred cccceeE-EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 108 IEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 108 ~~~~i~~-l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
+-|.. ++|.+ .++..+++|+.|.+|.+|...+..
T Consensus 58 --g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~------------------------------------------ 92 (745)
T KOG0301|consen 58 --GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAE------------------------------------------ 92 (745)
T ss_pred --ceeeccceecc-ccCcceEeecccceEEEEecCCCC------------------------------------------
Confidence 66777 88854 566679999999999999987665
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
+..++ .+|...|.+++...++. +++| -|.++++|... ++.. .+++|+..
T Consensus 93 ------------------P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~-------~l~gH~as 142 (745)
T KOG0301|consen 93 ------------------PLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVY-------SLQGHTAS 142 (745)
T ss_pred ------------------chhhh-hccccceeeeecCCcCc-eEecccccceEEecch---hhhc-------ccCCcchh
Confidence 33333 89999999999888887 8888 99999999876 3333 27899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCe
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 345 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 345 (497)
|++++.-|++ .+++|+.|..|++|.-.+ .. +.| .+|.+-|+.+++-+++.++-++.||.
T Consensus 143 VWAv~~l~e~--~~vTgsaDKtIklWk~~~--~l----~tf-------------~gHtD~VRgL~vl~~~~flScsNDg~ 201 (745)
T KOG0301|consen 143 VWAVASLPEN--TYVTGSADKTIKLWKGGT--LL----KTF-------------SGHTDCVRGLAVLDDSHFLSCSNDGS 201 (745)
T ss_pred eeeeeecCCC--cEEeccCcceeeeccCCc--hh----hhh-------------ccchhheeeeEEecCCCeEeecCCce
Confidence 9999999985 899999999999998733 22 444 45778999999999988888888999
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
|++|++. +..+.++.+|...+ ++++..+++..++++++|++++||+.. ...+.+.-....
T Consensus 202 Ir~w~~~--ge~l~~~~ghtn~v---------------Ysis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPtts 261 (745)
T KOG0301|consen 202 IRLWDLD--GEVLLEMHGHTNFV---------------YSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTS 261 (745)
T ss_pred EEEEecc--CceeeeeeccceEE---------------EEEEecCCCCeEEEecCCceEEEeecC---ceEEEEecCccc
Confidence 9999994 89999999999875 688888888999999999999999987 344666666668
Q ss_pred eeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+++..+-+. +. +++|++||. ++|
T Consensus 262 iWsa~~L~N--gD------Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 262 IWSAKVLLN--GD------IVVGGSDGRVRVF 285 (745)
T ss_pred eEEEEEeeC--CC------EEEeccCceEEEE
Confidence 889888763 33 799999999 999
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-26 Score=185.34 Aligned_cols=247 Identities=13% Similarity=0.128 Sum_probs=192.8
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC--CCCcEEEEEeCCCe
Q 010933 211 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSSRGF 287 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~ 287 (497)
..|.+.|.++...--|+.|+++ .|++|+|+.++..++.... .++.+|+++|..++|.. .| .+||+++.||.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgk 81 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDGK 81 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCce
Confidence 6899999998888889999999 9999999999966642222 35899999999999975 56 99999999999
Q ss_pred EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC--CCEEEEE-ecCeEEEEecCCCCc--eeeeee
Q 010933 288 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLSR-DYMNLKLWDIRMDST--PVATFK 362 (497)
Q Consensus 288 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~-~~~~i~lwd~~~~~~--~~~~~~ 362 (497)
|.||.-.+++-. +..+ +..|...+++++|-|. |-.|+++ +||.|.|.+.+..+. .-....
T Consensus 82 VIiWke~~g~w~----k~~e-----------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 82 VIIWKEENGRWT----KAYE-----------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred EEEEecCCCchh----hhhh-----------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 999998887432 2222 2457789999999986 4567777 679999999986422 223345
Q ss_pred ecccccccccccCCCCCccceeEEEEcCC---C-----------CEEEEEeCCCcEEEEEcCCCCcc-eEEEeccCccee
Q 010933 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGD---G-----------LHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENR 427 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~-----------~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~v~ 427 (497)
.|...+ ++++|.|- | +.|++|+.|+.|+||+..+++-+ ...|++|.+.|+
T Consensus 147 aH~~Gv---------------nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 147 AHEIGV---------------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred cccccc---------------ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 566544 68999985 4 56999999999999999986533 456999999999
Q ss_pred eeEeecCCCcccccccceeEeeccCc-eecCCCCC-----cccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGH-----HELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~-----~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
.+++.|.. +.- ...+|+++.||. .||..+.. ...+..+...+.+++||+.|++||+++ ++.+++|-
T Consensus 212 DVAwaP~~-gl~--~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 212 DVAWAPSV-GLP--KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhcccc-CCC--ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 99999973 211 346999999999 99933322 223445778899999999999999988 55688884
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-24 Score=174.31 Aligned_cols=255 Identities=18% Similarity=0.295 Sum_probs=186.6
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|.+.|+|.+|||+|++||+|+.|..|++..+........ ..-.+|.-|+
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~------------------g~dle~nmhd------------ 136 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT------------------GHDLEFNMHD------------ 136 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc------------------CcceeeeecC------------
Confidence 4789999999999999999999999999987654321000 1122344455
Q ss_pred cceeEEEEEec--CCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAA--PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s--~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
+.|..++|.-. ..+..|++++ .|..|.+=|-..|+
T Consensus 137 gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~------------------------------------------ 174 (350)
T KOG0641|consen 137 GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ------------------------------------------ 174 (350)
T ss_pred CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC------------------------------------------
Confidence 89999999742 3355666654 45555555554444
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
....+ .+|++.|.++ ++-+|-.+++| .|.+|++||++ -..++.+++.....-.-.+..
T Consensus 175 ------------------~~~a~-sghtghilal-yswn~~m~~sgsqdktirfwdlr-v~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 175 ------------------GFHAL-SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLR-VNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred ------------------cceee-cCCcccEEEE-EEecCcEEEccCCCceEEEEeee-ccceeeeccCcccCCCcccce
Confidence 22233 7999999876 35568899999 99999999999 556666654331111112477
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 344 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~ 344 (497)
|.++++.|.| ++|++|-.|....+||++.++.+ +. |..|...|.++.|+|...|+++++. .
T Consensus 234 vaav~vdpsg-rll~sg~~dssc~lydirg~r~i----q~-------------f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 234 VAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMI----QR-------------FHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred eEEEEECCCc-ceeeeccCCCceEEEEeeCCcee----ee-------------eCCCccceeEEEeCCCceEEEEecccc
Confidence 9999999999 99999999999999999998765 22 3446788999999999999999975 9
Q ss_pred eEEEEecCCCC---ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 345 NLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 345 ~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
.|++-|++-+- -++.....|...+ ..+.|+|..--+++.+.|.++.+|-+.
T Consensus 296 ~ikltdlqgdla~el~~~vv~ehkdk~---------------i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 KIKLTDLQGDLAHELPIMVVAEHKDKA---------------IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeecccchhhcCceEEEEeccCce---------------EEEEecCccceeeeccCcceEEEeccC
Confidence 99999997321 1223334455432 479999998889999999999999764
No 107
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=4.7e-25 Score=183.58 Aligned_cols=309 Identities=17% Similarity=0.213 Sum_probs=217.2
Q ss_pred cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.|.+.|+++.+.+ .|+|+++|+.||.|.+||++.....+-..-..+.-| ..-...-.+|.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c--------~v~~~h~~~Hk----------- 101 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKC--------IVAKQHENGHK----------- 101 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheee--------eccccCCccce-----------
Confidence 4899999999998 689999999999999999987542100000000000 00001113454
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
-.|.++.|-| -|..+|.+++.|.++++||..+-+.....
T Consensus 102 -y~iss~~WyP-~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--------------------------------------- 140 (397)
T KOG4283|consen 102 -YAISSAIWYP-IDTGMFTSSSFDHTLKVWDTNTLQEAVDF--------------------------------------- 140 (397)
T ss_pred -eeeeeeEEee-ecCceeecccccceEEEeecccceeeEEe---------------------------------------
Confidence 8899999987 56779999999999999999876633221
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
.-.+.|++-+++| ...++++| .+-.|++-|+. .+...++ +.+|..
T Consensus 141 -----------------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~-------LsGHr~ 189 (397)
T KOG4283|consen 141 -----------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHT-------LSGHRD 189 (397)
T ss_pred -----------------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceee-------eccccC
Confidence 2234566666666 24467788 99999999999 6666665 899999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccc-cCCccccccccccccEEEEeeCCCEEEEE-e
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES-HGSKSFFTEIIASISDIKFANDGQHLLSR-D 342 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~ 342 (497)
.|.++.|+|...-.|++|+.||.|++||+|...-+. .++..|... +...++-..|.+.++.++|+.+|.++++. .
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf---~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF---RVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeeccccee---EEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 999999999986788999999999999998753232 555554422 22223456888999999999999999875 6
Q ss_pred cCeEEEEecCCCCceeeeee--ecccccccccccCCCCCccceeEEEE---cCCCCEEEEEeCCCcEEEEEcCCCCcceE
Q 010933 343 YMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSV---SGDGLHFATGSYSNLLRIFSHGVGSAGGI 417 (497)
Q Consensus 343 ~~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 417 (497)
|..+++|+...+...+..+- .|... .++++ +.+...++---.++.+.++++-+++.+ .
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~~~~n~~----------------~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~i-r 329 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGPIIHNQT----------------TSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFV-R 329 (397)
T ss_pred ccceEEeecccCccccccccccccccc----------------ccceEEEeecccceEEEEecCCeEEEEEccCceEE-E
Confidence 79999999987433333321 11111 11222 223333443444688889998888655 7
Q ss_pred EEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 418 TVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 418 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.+..|-..+.+.++.+ +-+. +.+|..|+. .+|
T Consensus 330 ~l~~h~k~i~c~~~~~--~fq~-----~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 330 RLSTHLKRINCAAYRP--DFEQ-----CFTGDMNGNIYMW 362 (397)
T ss_pred eeecccceeeEEeecC--chhh-----hhccccCCccccc
Confidence 8888888888888888 4344 778899998 999
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.7e-26 Score=184.06 Aligned_cols=256 Identities=17% Similarity=0.228 Sum_probs=197.2
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|..+...--|++|||++.|++|+|+......+ ...+.+|.||+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~----------- 56 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS----------- 56 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC-----------
Confidence 46999999999998999999999999999999987542 25688999999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
++|..++|....-|..|++++.||.|.||.-++++..+...
T Consensus 57 -GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e-------------------------------------- 97 (299)
T KOG1332|consen 57 -GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE-------------------------------------- 97 (299)
T ss_pred -CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh--------------------------------------
Confidence 99999999632468899999999999999988876433211
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCce-eeEEeecCCCccCCCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 264 (497)
...|...|++++|.|. |-.|+++ .||.|.+.+.+..+. .... ....|.-
T Consensus 98 ---------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k------i~~aH~~ 150 (299)
T KOG1332|consen 98 ---------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK------IVFAHEI 150 (299)
T ss_pred ---------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh------hhhcccc
Confidence 2689999999999884 5567777 999999999885522 2211 2567999
Q ss_pred CeEEEEEeCC---C----------CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEE
Q 010933 265 VITSAEFHPI---Y----------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 331 (497)
Q Consensus 265 ~i~~~~~~~~---~----------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 331 (497)
.+++++|.|. | .+.|++|+.|..|+||+...++-.. .+ ++.+|.+.++.++|
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~--e~-------------~l~~H~dwVRDVAw 215 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL--ER-------------TLEGHKDWVRDVAW 215 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh--hh-------------hhhhcchhhhhhhh
Confidence 9999999986 2 1459999999999999998863221 12 24567899999999
Q ss_pred eeCC----CEEEEEe-cCeEEEEecCCCCcee--eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcE
Q 010933 332 ANDG----QHLLSRD-YMNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 404 (497)
Q Consensus 332 s~~g----~~l~~~~-~~~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i 404 (497)
.|.- .+||+++ ||.+.||..+.+..+- ..++..... ++.++||+.|..|+.++.|+.+
T Consensus 216 aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~---------------~w~vSWS~sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 216 APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDV---------------VWRVSWSLSGNILAVSGGDNKV 280 (299)
T ss_pred ccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcc---------------eEEEEEeccccEEEEecCCcEE
Confidence 9963 4688875 5999999876422211 111111121 2799999999999999999999
Q ss_pred EEEEcCC
Q 010933 405 RIFSHGV 411 (497)
Q Consensus 405 ~vw~~~~ 411 (497)
.+|.-..
T Consensus 281 tlwke~~ 287 (299)
T KOG1332|consen 281 TLWKENV 287 (299)
T ss_pred EEEEeCC
Confidence 9998553
No 109
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=197.45 Aligned_cols=241 Identities=19% Similarity=0.280 Sum_probs=194.8
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
.+.|.++.|-.||++||+|+..|.|+|+|..+. ..+..+.+|+ .+
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-----------------------~iLR~~~ah~------------ap 112 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-----------------------VILRQLYAHQ------------AP 112 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccH-----------------------HHHHHHhhcc------------Cc
Confidence 467889999999999999999999999996543 2367889999 99
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
|..+.|+| .++..|++|+.|+.+++||+.+...+
T Consensus 113 v~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v~--------------------------------------------- 146 (487)
T KOG0310|consen 113 VHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYVQ--------------------------------------------- 146 (487)
T ss_pred eeEEEecc-cCCeEEEecCCCceEEEEEcCCcEEE---------------------------------------------
Confidence 99999975 66788889999999999999876531
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
..+.+|++.|.+.+|+|... .+++| .||.|++||.+.....+. --.|..+|..+
T Consensus 147 ----------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~--------elnhg~pVe~v 202 (487)
T KOG0310|consen 147 ----------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV--------ELNHGCPVESV 202 (487)
T ss_pred ----------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE--------EecCCCceeeE
Confidence 11379999999999999655 66778 999999999995533322 23699999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~l 348 (497)
.+-|.| .++++++. ..+++||+-+|.... ..+ ..|...|+|+.+..++..|++|+ |+.+++
T Consensus 203 l~lpsg-s~iasAgG-n~vkVWDl~~G~qll---~~~-------------~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 203 LALPSG-SLIASAGG-NSVKVWDLTTGGQLL---TSM-------------FNHNKTVTCLRLASDSTRLLSGSLDRHVKV 264 (487)
T ss_pred EEcCCC-CEEEEcCC-CeEEEEEecCCceeh---hhh-------------hcccceEEEEEeecCCceEeecccccceEE
Confidence 999999 88888765 479999999765321 111 12557899999999999999875 699999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
||+.+ -+.+..++..... .+++.+|+++.++.|..||.+.+=+...+
T Consensus 265 fd~t~-~Kvv~s~~~~~pv----------------Lsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 265 FDTTN-YKVVHSWKYPGPV----------------LSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred EEccc-eEEEEeeecccce----------------eeEEecCCCceEEEecccceeeeehhhcc
Confidence 99865 7888888765543 69999999999999999999888755444
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=196.83 Aligned_cols=279 Identities=13% Similarity=0.196 Sum_probs=212.5
Q ss_pred ccccccccCcccccccccccccceeEEEEEecCCC-CEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
++..|.||. ++|.+++=+ |.. ..+++|+.||.|+|||+.+..+
T Consensus 58 Fv~~L~gHr------------dGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~---------------------- 101 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQREC---------------------- 101 (433)
T ss_pred chhhccccc------------cccchhhcC--cchhhhhhccccCceEEEEehhhhhh----------------------
Confidence 456778898 999999985 443 5799999999999999987663
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQ 247 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~ 247 (497)
+.++ ..|.+.|..+++.. +..+.+|+|.+|+.|.++ . .
T Consensus 102 --------------------------------------~~~f-~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~-~-~ 139 (433)
T KOG0268|consen 102 --------------------------------------IRTF-KAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKID-G-P 139 (433)
T ss_pred --------------------------------------hhee-ecccCceeeEEecc-cceEEecCCcceeeeecc-C-C
Confidence 3333 89999999999987 444444599999999988 3 3
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 327 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 327 (497)
...++ .....+..+.-+..+ ..+++++. .|.|||.+....+ ..+.. -...|.
T Consensus 140 p~~ti--------lg~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv----~smsw-------------G~Dti~ 191 (433)
T KOG0268|consen 140 PLHTI--------LGKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPV----SSMSW-------------GADSIS 191 (433)
T ss_pred cceee--------ecccccccccccccc-ccccccCc--eeeecccccCCcc----ceeec-------------CCCcee
Confidence 44432 123455666666666 78888877 5999998754433 33322 125799
Q ss_pred EEEEeeCCC-EEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933 328 DIKFANDGQ-HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 328 ~~~~s~~g~-~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 405 (497)
++.|+|... .|+++ +|+.|.|||+++ +.+++.+...-.. +.++|+|.+-.+++|++|..++
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEeccc-CCccceeeeeccc----------------cceecCccccceeeccccccce
Confidence 999999765 45554 789999999997 7777665433322 4799999877888999999999
Q ss_pred EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccC---CCeEEEEEecCC
Q 010933 406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLS---SKLLHLAWHPTT 481 (497)
Q Consensus 406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~---~~i~~l~~~p~~ 481 (497)
.||+...+......++|.+.|..+.|+| .|+. +++|+.|.. +|+...+....-.-|+ +.|.++.||.|.
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsp--tG~E-----fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDVDFSP--TGQE-----FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEeccCC--Ccch-----hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc
Confidence 9999988888888999999999999999 6777 999999999 9994443332222222 478999999999
Q ss_pred CEEEEEeCC-ceEEEeC
Q 010933 482 NLIACANGN-SLFFHYA 497 (497)
Q Consensus 482 ~~la~~~~~-~~~i~~~ 497 (497)
+++++|+++ ++.+|-|
T Consensus 328 kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKA 344 (433)
T ss_pred cEEEecCCCcceeeeec
Confidence 999999954 5999964
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=9.5e-25 Score=178.75 Aligned_cols=238 Identities=17% Similarity=0.277 Sum_probs=180.3
Q ss_pred ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcc
Q 010933 91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 170 (497)
Q Consensus 91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (497)
.++++|. +.|.+++| +.+|..|++++.|+++++|+++..+...-.
T Consensus 14 r~~~~~~------------~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~--------------------- 58 (313)
T KOG1407|consen 14 RELQGHV------------QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKEL--------------------- 58 (313)
T ss_pred HHhhhhh------------hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhh---------------------
Confidence 5677887 88999999 689999999999999999999876422110
Q ss_pred ccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCcee
Q 010933 171 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQC 248 (497)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~ 248 (497)
. ..+|.+.|-.++|.| ....++++ .|.+|++||++.+ ++
T Consensus 59 -------------------------------------~-~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~-k~ 99 (313)
T KOG1407|consen 59 -------------------------------------V-YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG-KC 99 (313)
T ss_pred -------------------------------------c-ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC-cE
Confidence 0 168999999999987 56677887 9999999999954 44
Q ss_pred eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933 249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 328 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (497)
...+. ....=.-+.|+|+| .++++++.|..|.+.|.++.+.... .+. ...++.
T Consensus 100 ~~~i~--------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~----~~~--------------~~e~ne 152 (313)
T KOG1407|consen 100 TARIE--------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNE----EQF--------------KFEVNE 152 (313)
T ss_pred EEEee--------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeeh----hcc--------------cceeee
Confidence 44321 11222457899999 9999999999999999998765421 111 134678
Q ss_pred EEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933 329 IKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 407 (497)
Q Consensus 329 ~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw 407 (497)
++|+.++.+++..+. |.|.|..... -+++..++.|.... .++.|+|+|+++|+|+.|..+.+|
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snC---------------icI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNC---------------ICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEeccc-cccccccccCCcce---------------EEEEECCCCceEeeccccceeecc
Confidence 889877776666544 9999999985 89999999998542 589999999999999999999999
Q ss_pred EcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc
Q 010933 408 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 453 (497)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~ 453 (497)
|++..-.+ ..+.-+.-||+.+.|+- ++++ ||+|++|..
T Consensus 217 D~~ELiC~-R~isRldwpVRTlSFS~--dg~~-----lASaSEDh~ 254 (313)
T KOG1407|consen 217 DVDELICE-RCISRLDWPVRTLSFSH--DGRM-----LASASEDHF 254 (313)
T ss_pred ChhHhhhh-eeeccccCceEEEEecc--Ccce-----eeccCccce
Confidence 99865333 55666666666666665 5555 666655433
No 112
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4.5e-25 Score=211.52 Aligned_cols=252 Identities=16% Similarity=0.244 Sum_probs=203.5
Q ss_pred cchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc
Q 010933 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE 92 (497)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (497)
.|+..+.+-. .....+|.+.|.+++|..-+.+|++|+.|.++++||..++ .+...
T Consensus 232 ~~~~~~~~~i--~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-----------------------~C~~~ 286 (537)
T KOG0274|consen 232 LWDLNNGYLI--LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-----------------------ECTHS 286 (537)
T ss_pred EeecccceEE--EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-----------------------cEEEE
Confidence 5666554332 2234579999999999988889999999999999998887 55889
Q ss_pred ccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCcccc
Q 010933 93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNE 172 (497)
Q Consensus 93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (497)
+.+|. +.|.++.. ...++++|+.|.+|++|+++++....
T Consensus 287 l~gh~------------stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~------------------------- 325 (537)
T KOG0274|consen 287 LQGHT------------SSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLN------------------------- 325 (537)
T ss_pred ecCCC------------ceEEEEEc----cCceEeeccCCceEEEEeccCcceEE-------------------------
Confidence 99999 88999987 34578888999999999999777443
Q ss_pred CCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEE
Q 010933 173 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI 251 (497)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 251 (497)
++ .+|..+|.++..+ +..+++| .|++|++||+. ..++++.
T Consensus 326 -----------------------------------l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~s 366 (537)
T KOG0274|consen 326 -----------------------------------LL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLKS 366 (537)
T ss_pred -----------------------------------Ee-ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeeee
Confidence 33 6699999999988 7789999 99999999999 7788876
Q ss_pred eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC-cccccccceecccccccCCccccccccccccEEE
Q 010933 252 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
+.+|...|+++.+.+. ..+++|+.|+.|++||+++. +.+ ..+.. |..-+..+.
T Consensus 367 -------l~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~----~tl~~-------------h~~~v~~l~ 420 (537)
T KOG0274|consen 367 -------LSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI----HTLQG-------------HTSLVSSLL 420 (537)
T ss_pred -------ecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh----hhhcC-------------Ccccccccc
Confidence 8899999999988875 57999999999999999988 443 44444 445565554
Q ss_pred EeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeec-ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 331 FANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 331 ~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
+ .+++|++++ |+.|++||... +++++.+.++ ...+ ..+++. ...+++++.||.+++||
T Consensus 421 ~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~v---------------~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 421 L--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGGV---------------SALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred c--ccceeEeccccccEEEeeccc-CceeeeeccCCcccE---------------EEeecC--cceEEEEecCCeeEEEe
Confidence 4 467888874 69999999986 8999999884 4432 344443 57899999999999999
Q ss_pred cCCCCcc
Q 010933 409 HGVGSAG 415 (497)
Q Consensus 409 ~~~~~~~ 415 (497)
++++...
T Consensus 481 l~~~~~~ 487 (537)
T KOG0274|consen 481 LRSGTLI 487 (537)
T ss_pred cccCchh
Confidence 9998665
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=3.1e-25 Score=197.39 Aligned_cols=252 Identities=15% Similarity=0.235 Sum_probs=197.5
Q ss_pred CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
..+.|.+-|-++.+|...+++.||+. |.|+|||+..... + ..+..+..-+.
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~---k-----------------~PvsqLdcl~r-------- 464 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN---K-----------------SPVSQLDCLNR-------- 464 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC---C-----------------CccccccccCc--------
Confidence 34678999999999999999999986 7899999976421 1 12233332221
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
++.|.++.. .+||+.|++|+.-.++.|||+.......-..
T Consensus 465 --dnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikae------------------------------------ 504 (705)
T KOG0639|consen 465 --DNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAE------------------------------------ 504 (705)
T ss_pred --ccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhh------------------------------------
Confidence 177888888 6899999999999999999997644211000
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
+.......+.++.+||.+..+++ .||.|.|||+. .+..+.. +++|.+.
T Consensus 505 -----------------------ltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~Vrq-------fqGhtDG 553 (705)
T KOG0639|consen 505 -----------------------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQGHTDG 553 (705)
T ss_pred -----------------------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeec-------ccCCCCC
Confidence 12333457789999999999998 99999999999 5555543 8999999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 344 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~ 344 (497)
+.||..+++| ..|-+|+-|.+||-||+++++...+ ..| ...|.++.++|++.+++.|-. +
T Consensus 554 ascIdis~dG-tklWTGGlDntvRcWDlregrqlqq--hdF----------------~SQIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 554 ASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQ--HDF----------------SSQIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred ceeEEecCCC-ceeecCCCccceeehhhhhhhhhhh--hhh----------------hhhheecccCCCccceeeecccC
Confidence 9999999999 9999999999999999999865421 112 257999999999999999955 8
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
.+.|.... +.....+.-|+..+ .++.|++-|+++++.+.|+.+..|...-|..
T Consensus 615 ~vevlh~s--kp~kyqlhlheScV---------------LSlKFa~cGkwfvStGkDnlLnawrtPyGas 667 (705)
T KOG0639|consen 615 NVEVLHTS--KPEKYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 667 (705)
T ss_pred cEEEEecC--CccceeecccccEE---------------EEEEecccCceeeecCchhhhhhccCccccc
Confidence 88887765 55556666677654 7999999999999999999999999887733
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.4e-25 Score=194.94 Aligned_cols=241 Identities=15% Similarity=0.251 Sum_probs=188.5
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+-.++|++++|.+++.++++.+.|+.+++|++...+ ...+|.||+
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-----------------------~~~TLsGHt------------ 261 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-----------------------LRHTLSGHT------------ 261 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchh-----------------------hhhhhcccc------------
Confidence 446789999999999999999999999999998764 488999999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|+++.|. .....+++++.|.+|++||+....+.+
T Consensus 262 dkVt~ak~~--~~~~~vVsgs~DRtiK~WDl~k~~C~k------------------------------------------ 297 (459)
T KOG0288|consen 262 DKVTAAKFK--LSHSRVVSGSADRTIKLWDLQKAYCSK------------------------------------------ 297 (459)
T ss_pred cceeeehhh--ccccceeeccccchhhhhhhhhhheec------------------------------------------
Confidence 889999994 343449999999999999998866433
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+++. .+.+.++..+ ...+++| .|+.|++||++... +... .+ ..+.|++
T Consensus 298 ------------------t~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~-~~~s-------v~-~gg~vtS 346 (459)
T KOG0288|consen 298 ------------------TVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD-KTRS-------VP-LGGRVTS 346 (459)
T ss_pred ------------------cccc--cccccceEec--ceeeeecccccceEEEeccCCc-eeeE-------ee-cCcceee
Confidence 2211 2234455544 4567888 99999999999444 3333 22 3359999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
+..++++ ..+++++.|.++.+.|+++.+.+ ..+... .+..+ ...+.+.|||++.|+++|+ ||.|+
T Consensus 347 l~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA~-------g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 347 LDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSAE-------GFKCA--SDWTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred EeeccCC-eEEeeecCCCceeeeecccccEE----EEeecc-------ccccc--cccceeEECCCCceeeeccCCCcEE
Confidence 9999999 88888899999999999997765 333320 01112 3489999999999999995 59999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
||++.+ +++...+....... +|++++|+|.|..|++++.++.+.+|.
T Consensus 413 iW~v~t-gKlE~~l~~s~s~~-------------aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 413 IWSVFT-GKLEKVLSLSTSNA-------------AITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEccC-ceEEEEeccCCCCc-------------ceEEEEEcCCCchhhcccCCcceEecC
Confidence 999986 88887776655431 237999999999999999999999993
No 115
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.6e-25 Score=183.66 Aligned_cols=292 Identities=13% Similarity=0.146 Sum_probs=196.6
Q ss_pred eEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeE
Q 010933 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 114 (497)
Q Consensus 35 I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~ 114 (497)
-.|+.||+.|.+||+|+.||.|.|||+.+-. ....+.+|. .+|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------RPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------cceeE
Confidence 6899999999999999999999999998753 367788999 99999
Q ss_pred EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933 115 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 194 (497)
Q Consensus 115 l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (497)
++| +++|+.|+++|.|..|++||+..|.+.....++. .+....+.+. ..+.++++-. +....+
T Consensus 71 l~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~s--pv~~~q~hp~----------k~n~~va~~~---~~sp~v 133 (405)
T KOG1273|consen 71 LCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDS--PVWGAQWHPR----------KRNKCVATIM---EESPVV 133 (405)
T ss_pred EEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEccC--ccceeeeccc----------cCCeEEEEEe---cCCcEE
Confidence 999 7999999999999999999999887554332221 1111111111 1122222221 111222
Q ss_pred EeecCCccceeeeeeccCCCC-CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC-CCCeEEEEE
Q 010933 195 ANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEF 271 (497)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~ 271 (497)
-+.... ...++..--.+... ...+..|.+.|+++++| ..|.+.++|.+ +.+++.- +.-. ...|..+.+
T Consensus 134 i~~s~~-~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~-t~e~vas-------~rits~~~IK~I~~ 204 (405)
T KOG1273|consen 134 IDFSDP-KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE-TLECVAS-------FRITSVQAIKQIIV 204 (405)
T ss_pred EEecCC-ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc-hheeeee-------eeechheeeeEEEE
Confidence 222210 01111100001111 11223578999999999 99999999999 4455543 2222 367889999
Q ss_pred eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccc--cccccccEEEEeeCCCEEEEEec--CeEE
Q 010933 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT--EIIASISDIKFANDGQHLLSRDY--MNLK 347 (497)
Q Consensus 272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~l~~~~~--~~i~ 347 (497)
+..| ..|++-+.|+.||.|+++.-....+ ...+.....+. -.+....+++|+.+|.|+++++. ..++
T Consensus 205 s~~g-~~liiNtsDRvIR~ye~~di~~~~r--------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 205 SRKG-RFLIINTSDRVIRTYEISDIDDEGR--------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eccC-cEEEEecCCceEEEEehhhhcccCc--------cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 9999 9999999999999999873211100 00000000000 11245678999999999999854 8999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
||.-.. |.+++.+.|..+.. ..++.|+|-...|++- ..|.+++|.....
T Consensus 276 IWE~~~-GsLVKILhG~kgE~--------------l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 276 IWEKSI-GSLVKILHGTKGEE--------------LLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred EEecCC-cceeeeecCCchhh--------------eeecccccceeeeeec-cCCceEEEEeecc
Confidence 999987 99999998877531 1479999998888887 7799999997653
No 116
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.1e-25 Score=199.10 Aligned_cols=262 Identities=16% Similarity=0.162 Sum_probs=188.7
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
....|++++||+.|..|++.+.....+|+|.++-+..+..+. +. -..-+.--+||. .
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KG----DQ-------YI~Dm~nTKGHi------------a 269 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKG----DQ-------YIRDMYNTKGHI------------A 269 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeecc----ch-------hhhhhhccCCce------------e
Confidence 356899999999999888888788999999876543111000 00 111233346777 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchhee-ccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+++.+|+| .+.+.|++++.||++++|++++.+.. .+++..
T Consensus 270 ~lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k------------------------------------- 311 (641)
T KOG0772|consen 270 ELTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK------------------------------------- 311 (641)
T ss_pred eeecccccc-CcccceEEecCCCcEEEEecCCchhheeEEeec-------------------------------------
Confidence 899999976 34568999999999999999875421 111100
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC--Ce
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE--VI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~i 266 (497)
...+..-++++++|+++|+.||+| .||.|.+|+......... +. .-..|.. .|
T Consensus 312 -------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-~~----vk~AH~~g~~I 367 (641)
T KOG0772|consen 312 -------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-MK----VKDAHLPGQDI 367 (641)
T ss_pred -------------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-eE----eeeccCCCCce
Confidence 013445578899999999999999 999999999752211111 00 1356776 89
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---- 342 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---- 342 (497)
++++|+++| ++|++-+.|+.+++||+++.+... .++.+-. ..-+-+.++|||+.++|++|+
T Consensus 368 tsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkpL---~~~tgL~-----------t~~~~tdc~FSPd~kli~TGtS~~~ 432 (641)
T KOG0772|consen 368 TSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKPL---NVRTGLP-----------TPFPGTDCCFSPDDKLILTGTSAPN 432 (641)
T ss_pred eEEEecccc-chhhhccCCCceeeeeccccccch---hhhcCCC-----------ccCCCCccccCCCceEEEecccccC
Confidence 999999999 999999999999999999876443 2222200 013467899999999999973
Q ss_pred -c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 343 -Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 343 -~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
. |.+.+||..+ -..+..+......+ ..+.|+|-=+.|+.|+.||.++||=
T Consensus 433 ~~~~g~L~f~d~~t-~d~v~ki~i~~aSv---------------v~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 433 GMTAGTLFFFDRMT-LDTVYKIDISTASV---------------VRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCCCceEEEEeccc-eeeEEEecCCCceE---------------EEEeecchhhheeeecCCCceEEEE
Confidence 1 7899999876 66666665554332 5899999888899999999999874
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.6e-24 Score=202.23 Aligned_cols=252 Identities=15% Similarity=0.200 Sum_probs=193.0
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|+..-+.|+|.|+|++|.+++.||.|++|+...... .|+. +.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~t-----i~~~g----------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPET-----IDISG----------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCch-----hhccC-----------
Confidence 35888999999999999999999999999999765421 1111 11133
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++- ++.+|++++.+++|.+|.+..++...+
T Consensus 57 -~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~i---------------------------------------- 91 (933)
T KOG1274|consen 57 -ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTI---------------------------------------- 91 (933)
T ss_pred -ceeEEEee----cccceEEeeccceEEEeeCCCCCccce----------------------------------------
Confidence 66777775 455999999999999999988763221
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
+ ..-+-++.+++++.+|+.++.| +|-.|++-+.....+... +.+|+++|.
T Consensus 92 -----------------L----~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~--------lrgh~apVl 142 (933)
T KOG1274|consen 92 -----------------L----ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV--------LRGHDAPVL 142 (933)
T ss_pred -----------------e----eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee--------ecccCCcee
Confidence 1 2235588999999999999999 999999999885444333 789999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEecCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDYMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~~~i 346 (497)
++.|+|.+ ++||+.+-||.|++||+.++.+......+... .+. .....+..++|+|+ |++++.+.++.|
T Consensus 143 ~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~----n~~-----~~s~i~~~~aW~Pk~g~la~~~~d~~V 212 (933)
T KOG1274|consen 143 QLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD----NEF-----ILSRICTRLAWHPKGGTLAVPPVDNTV 212 (933)
T ss_pred eeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCcc----ccc-----cccceeeeeeecCCCCeEEeeccCCeE
Confidence 99999999 99999999999999999988765222222221 000 01356788999999 556666788999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
++|+... ......+...... .. +..+.|+|+|+|||+++.||.|.|||+++
T Consensus 213 kvy~r~~-we~~f~Lr~~~~s-----------s~--~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 213 KVYSRKG-WELQFKLRDKLSS-----------SK--FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEccCC-ceeheeecccccc-----------cc--eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999975 7776666544332 11 15899999999999999999999999997
No 118
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.2e-24 Score=188.64 Aligned_cols=244 Identities=16% Similarity=0.219 Sum_probs=193.4
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.-.|+.+.|+|+...+++++.|-.|+||...... .......|+
T Consensus 259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----------------------~~~~~~~h~------------ 303 (506)
T KOG0289|consen 259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----------------------EPTSSRPHE------------ 303 (506)
T ss_pred CcceEEEEEEeccchhheeecCCcceEEeecccccc-----------------------Ccccccccc------------
Confidence 689999999999999999999999999999986542 245567888
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|+.+.. .|.|.||++++.|++..+.|+.++.+......
T Consensus 304 ~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-------------------------------------- 343 (506)
T KOG0289|consen 304 EPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-------------------------------------- 343 (506)
T ss_pred ccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEEee--------------------------------------
Confidence 99999999 57899999999999999999998875432110
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
....-.+++++|+|||..|.+| .|+.+++||+.... ... .+.+|+++|..
T Consensus 344 ---------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a-------~Fpght~~vk~ 394 (506)
T KOG0289|consen 344 ---------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVA-------KFPGHTGPVKA 394 (506)
T ss_pred ---------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccc-------cCCCCCCceeE
Confidence 1223458899999999999999 99999999999443 332 38899999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+.+| .+|+++..|+.|++||+|..+.. +.+.. . ....+.++.|.+.|.+|+.++ +=.|+
T Consensus 395 i~FsENG-Y~Lat~add~~V~lwDLRKl~n~----kt~~l-~-----------~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 395 ISFSENG-YWLATAADDGSVKLWDLRKLKNF----KTIQL-D-----------EKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred EEeccCc-eEEEEEecCCeEEEEEehhhccc----ceeec-c-----------ccccceeEEEcCCCCeEEeecceeEEE
Confidence 9999999 99999999999999999986543 33333 0 013599999999999999874 24444
Q ss_pred EEecCC-CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 348 LWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 348 lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
+++-.+ ...++..+..|.+.. +.+.|....++++++|.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhheEEeec
Confidence 444221 145566666666443 68999999999999999999998864
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-24 Score=190.36 Aligned_cols=251 Identities=14% Similarity=0.148 Sum_probs=192.5
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
.|...|.+++.||||+|||+|+.|..|.||+.++.+ .++.+.+|.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-----------------------hv~~~~ghr------------ 244 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-----------------------HVKVFKGHR------------ 244 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-----------------------hhhcccccc------------
Confidence 688999999999999999999999999999999874 377799999
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|.+++| ......+++++.|+.|++|+++....+..
T Consensus 245 ~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s~vet----------------------------------------- 281 (479)
T KOG0299|consen 245 GAVSSLAF--RKGTSELYSASADRSVKVWSIDQLSYVET----------------------------------------- 281 (479)
T ss_pred cceeeeee--ecCccceeeeecCCceEEEehhHhHHHHH-----------------------------------------
Confidence 99999999 45556899999999999999987664332
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+.+|.+.|.++....-++.+.+| .|+++++|++....+.+ +.++.+.+-|
T Consensus 282 --------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli---------frg~~~sidc 332 (479)
T KOG0299|consen 282 --------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI---------FRGGEGSIDC 332 (479)
T ss_pred --------------------HhCCccceeeechhcccceEEeccccceeEEEeccccceee---------eeCCCCCeee
Confidence 27999999999999889888888 99999999997444433 5678899999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~ 347 (497)
++|-.+ ..|++|+.+|.|.+|++...+.+.. .-..|...+... .-.+..+|++++..|...++++|+. |.|+
T Consensus 333 v~~In~--~HfvsGSdnG~IaLWs~~KKkplf~---~~~AHgv~~~~~--~~~~~~Witsla~i~~sdL~asGS~~G~vr 405 (479)
T KOG0299|consen 333 VAFIND--EHFVSGSDNGSIALWSLLKKKPLFT---SRLAHGVIPELD--PVNGNFWITSLAVIPGSDLLASGSWSGCVR 405 (479)
T ss_pred EEEecc--cceeeccCCceEEEeeecccCceeE---eeccccccCCcc--ccccccceeeeEecccCceEEecCCCCceE
Confidence 999987 5799999999999999988765421 111112111110 0112258999999999999999975 9999
Q ss_pred EEecCCCCc---eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcC
Q 010933 348 LWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHG 410 (497)
Q Consensus 348 lwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~ 410 (497)
+|-+..+.+ ++..+. -.+. |++++|+++|+.|+ ..+...++--|-..
T Consensus 406 LW~i~~g~r~i~~l~~ls-~~Gf---------------VNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 406 LWKIEDGLRAINLLYSLS-LVGF---------------VNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred EEEecCCccccceeeecc-cccE---------------EEEEEEccCCCEEEEecccccccceeeEe
Confidence 999986433 333333 1222 37999999999555 44555555555443
No 120
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1e-24 Score=211.83 Aligned_cols=266 Identities=15% Similarity=0.256 Sum_probs=195.6
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhccc---CCCCCCcccccccccccCcccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDF---TSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
..|.+.|+|+.|+|||+|||+|+.|+.|.||+...... ...++ .-.....++....+.+|+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~--------~~~fgs~g~~~~vE~wk~~~~l~~H~-------- 129 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS--------GTVFGSTGGAKNVESWKVVSILRGHD-------- 129 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC--------cccccccccccccceeeEEEEEecCC--------
Confidence 36899999999999999999999999999999874110 00000 112234678889999999
Q ss_pred cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..|.+++| +|++.+|++++.|++|.+|+..+.+..
T Consensus 130 ----~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF~~~--------------------------------------- 164 (942)
T KOG0973|consen 130 ----SDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTFELL--------------------------------------- 164 (942)
T ss_pred ----Cccceecc--CCCccEEEEecccceEEEEccccceee---------------------------------------
Confidence 88999999 689999999999999999998876532
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
+++ .+|...|..+.|.|-|++|++= +|++|++|+.. .-...+.+.-+ ..-.....
T Consensus 165 ---------------------~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~-dw~i~k~It~p-f~~~~~~T 220 (942)
T KOG0973|consen 165 ---------------------KVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS-DWGIEKSITKP-FEESPLTT 220 (942)
T ss_pred ---------------------eee-ecccccccceEECCccCeeeeecCCceEEEEEcc-cceeeEeeccc-hhhCCCcc
Confidence 333 8999999999999999999997 99999999976 33344433211 11112345
Q ss_pred CeEEEEEeCCCCcEEEEEeC----CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-----C
Q 010933 265 VITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----G 335 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g 335 (497)
-+..+.|+||| .+|++... -..+.|.+-.+-+. ...+-+|..++.++.|+|. .
T Consensus 221 ~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~-----------------~~~LvGH~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 221 FFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKV-----------------DKDLVGHSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred eeeecccCCCc-CeecchhhccCCcceeEEEecCCcee-----------------eeeeecCCCceEEEEeChHHhcccc
Confidence 67899999999 99988744 22455555432211 1224567889999999972 1
Q ss_pred C------------EEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 336 Q------------HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 336 ~------------~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
+ .+|+| .|++|.||.... .+++..+..-... + |.+++|+|||..|+++|.||
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~-----------S---I~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK-----------S---IVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcC-----------c---eeeeeEcCCCCeEEEEecCC
Confidence 1 34556 469999999865 5665544322211 2 26999999999999999999
Q ss_pred cEEEEEcCCC
Q 010933 403 LLRIFSHGVG 412 (497)
Q Consensus 403 ~i~vw~~~~~ 412 (497)
+|.+..++..
T Consensus 348 tV~~i~Fee~ 357 (942)
T KOG0973|consen 348 TVALIHFEEK 357 (942)
T ss_pred eEEEEEcchH
Confidence 9999998763
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.9e-24 Score=178.18 Aligned_cols=305 Identities=14% Similarity=0.156 Sum_probs=209.1
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|.+.|++++||.||++||+++.|++|+||++..-.+.++ +++. . .++.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH------------------r~~R---~---------nve~- 132 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH------------------RCIR---Q---------NVEY- 132 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh------------------hHhh---c---------cccC-
Confidence 5899999999999999999999999999999876332110 1110 0 0011
Q ss_pred cceeEEEEEecCCCCEEE-EEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.-+.++| .||.+-++ ++-....+++|.+...+--. ..+.
T Consensus 133 dhpT~V~F--apDc~s~vv~~~~g~~l~vyk~~K~~dG~-~~~~------------------------------------ 173 (420)
T KOG2096|consen 133 DHPTRVVF--APDCKSVVVSVKRGNKLCVYKLVKKTDGS-GSHH------------------------------------ 173 (420)
T ss_pred CCceEEEE--CCCcceEEEEEccCCEEEEEEeeecccCC-CCcc------------------------------------
Confidence 23588999 56655554 44567789999875433100 0000
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
.+ -||- ..|...|...+..+-....+++|+++ .|..|.+|+++ ++.++.++ .....-+
T Consensus 174 --~v-~~D~---------~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~id-------tnq~~n~ 232 (420)
T KOG2096|consen 174 --FV-HIDN---------LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSID-------TNQSSNY 232 (420)
T ss_pred --cc-cccc---------cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeeeec-------ccccccc
Confidence 00 0110 00125677788888888899999999 99999999998 56666543 3334456
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCc--ccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSA--LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 344 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 344 (497)
..+.+|+| +++++++..--+++|.+--++ ....-.++|+ +.+|...|..++|+|+.+.+++.+ ||
T Consensus 233 ~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-----------LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 233 DAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-----------LKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred ceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhhe-----------eccchhheeeeeeCCCcceeEEEecCC
Confidence 78999999 999999999999999863221 1111123333 478999999999999999999975 69
Q ss_pred eEEEEecCC------CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 010933 345 NLKLWDIRM------DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 418 (497)
Q Consensus 345 ~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 418 (497)
.+++||..- +.+.+++..... |....+ . ..++.+|+|+.||... ...|++|..++++....-
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl------~aag~~-p----~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPL------HAAGSE-P----VRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL 368 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcch------hhcCCC-c----eEEEeCCCCcEEEeec-CCceEEEEcccCccchhH
Confidence 999999753 122222221110 100000 1 3799999999887554 468999999998776666
Q ss_pred EeccCcceeeeEeecCCCcccccccceeEeeccCceec
Q 010933 419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN 456 (497)
Q Consensus 419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw 456 (497)
-+.|...|.++.+++ +|++ ++++++.-.++.
T Consensus 369 e~~h~~~Is~is~~~--~g~~-----~atcGdr~vrv~ 399 (420)
T KOG2096|consen 369 EDIHSTTISSISYSS--DGKY-----IATCGDRYVRVI 399 (420)
T ss_pred HHhhcCceeeEEecC--CCcE-----Eeeecceeeeee
Confidence 678999999999999 7888 888887766555
No 122
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1.9e-24 Score=182.25 Aligned_cols=299 Identities=15% Similarity=0.204 Sum_probs=216.5
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCC-cccccccccccCcccccccccccccce
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHP-EYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
-...+.|||||..|++-+.|..+.+|++.......- ...+ .+....+++-.+ ...|
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~------------~~~~~~~~~~~~~r~~e-----------g~tv 107 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK------------ADGPLNFSKHLSYRYQE-----------GETV 107 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccC------------CCCccccccceeEEecc-----------CCEE
Confidence 345688999999999999999999999853221000 0000 011111111111 1558
Q ss_pred eEEEEEe-----cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 113 NRVRWCA-----APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 113 ~~l~~~~-----s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
+.-+|-+ .|+..++++.+.|.-|++||.-+|++......
T Consensus 108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~------------------------------------ 151 (406)
T KOG2919|consen 108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA------------------------------------ 151 (406)
T ss_pred EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh------------------------------------
Confidence 8888864 46778999999999999999999885542111
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCC---CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDF---NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
..|.. ...+++|+|||..|++|...+|++||+...++...........-.+..+
T Consensus 152 -----------------------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 152 -----------------------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred -----------------------hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 12222 3358999999999999999999999996566544332211111234578
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 342 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-- 342 (497)
.|.+++|+|..+..++.++....+-||.-..++.+ ..+ .+|.+.|+.+.|.++|+.|++|.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~ll-------------ggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLL-------------GGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCce----eee-------------cccCCCeeeEEeccCcCeecccccC
Confidence 89999999988679999999999888887665544 333 34678999999999999999985
Q ss_pred cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEecc
Q 010933 343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 422 (497)
Q Consensus 343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 422 (497)
+..|..||++....++..+..|...- +..| -+...|++++|++|+.||.|++||++........+..+
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~T--------NQRI----~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~ 339 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGDT--------NQRI----LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY 339 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccCc--------cceE----EEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence 48999999998777888887776521 1122 37778999999999999999999999854555888999
Q ss_pred CcceeeeEeecCCCcccccccceeEeec
Q 010933 423 KNENRKPILQAAPRARRSSLSNLTRGLY 450 (497)
Q Consensus 423 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 450 (497)
...++.+.+.|. ++.+|+++.
T Consensus 340 sd~vNgvslnP~-------mpilatssG 360 (406)
T KOG2919|consen 340 SDTVNGVSLNPI-------MPILATSSG 360 (406)
T ss_pred cccccceecCcc-------cceeeeccC
Confidence 999999999985 445777653
No 123
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.9e-25 Score=204.64 Aligned_cols=256 Identities=14% Similarity=0.173 Sum_probs=203.5
Q ss_pred CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
..+...-.|.|++.||+|++||+|..-|.|+||++... +......+|+
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-----------------------~~~~~~eAHe--------- 501 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-----------------------EYTCFMEAHE--------- 501 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhh-----------------------hhhhheeccc---------
Confidence 33444568999999999999999999999999999865 3366788999
Q ss_pred ccccceeEEEEEe-cCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 107 EIEEKINRVRWCA-APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 107 ~~~~~i~~l~~~~-s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..|.++.|+. .-..++|++++.|+.|.+||+...-
T Consensus 502 ---sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny----------------------------------------- 537 (1080)
T KOG1408|consen 502 ---SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY----------------------------------------- 537 (1080)
T ss_pred ---ceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----------------------------------------
Confidence 7799999972 2235789999999999999987543
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
..++++ .+|...|+++.|.-.| ..++++ .|+.|.+--.+..+. ...+ . ..+-.-.
T Consensus 538 ------------------~l~qtl-d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~-g~~f-~-r~t~t~~ 595 (1080)
T KOG1408|consen 538 ------------------DLVQTL-DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS-GRLF-P-RHTQTLS 595 (1080)
T ss_pred ------------------chhhhh-cccccceeEEEEeecCCceEEEeccCchhhheehhccccC-ceec-c-ccccccc
Confidence 122333 7999999999997766 667776 888776533331111 1110 0 0111122
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 341 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 341 (497)
...++.+++.|.. +++++++.|+.|+|||+.+++.. +.|++ -.+|.+....+...|.|-|+++.
T Consensus 596 ktTlYDm~Vdp~~-k~v~t~cQDrnirif~i~sgKq~----k~FKg----------s~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTS-KLVVTVCQDRNIRIFDIESGKQV----KSFKG----------SRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred cceEEEeeeCCCc-ceEEEEecccceEEEecccccee----eeecc----------cccCCCceEEEEECCCccEEEEee
Confidence 4678999999998 99999999999999999999876 77776 24566788899999999999996
Q ss_pred ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
+|.++.++|..+ ++++.++.+|...+ +.+.|.+|-++|++.+.||.|.||.+..
T Consensus 661 sdktl~~~Df~s-gEcvA~m~GHsE~V---------------TG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 661 SDKTLCFVDFVS-GECVAQMTGHSEAV---------------TGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCCceEEEEecc-chhhhhhcCcchhe---------------eeeeecccchhheeecCCceEEEEECch
Confidence 789999999997 99999999999876 7999999999999999999999999865
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.4e-24 Score=198.99 Aligned_cols=281 Identities=14% Similarity=0.130 Sum_probs=221.5
Q ss_pred CcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccc
Q 010933 85 PEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 164 (497)
Q Consensus 85 ~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (497)
+.|+...++.+|+ ..|..++. .++..++++|.||++++|+-..++.....
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~---~~~~~i~s~sRd~t~~vw~~~~~~~l~~~--------------- 51 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAV---TDGVCIISGSRDGTVKVWAKKGKQYLETH--------------- 51 (745)
T ss_pred CcceeEEEeccCc------------cchheeEe---cCCeEEeecCCCCceeeeeccCcccccce---------------
Confidence 3577788899999 77888887 45668999999999999998766533211
Q ss_pred cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeE-EEeCC-CCCEEEEE-cCCeEEEEe
Q 010933 165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS-ISNNS-DCETFVSA-DDLRINLWN 241 (497)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~-~d~~i~iwd 241 (497)
.+.+|.+.|.. +++.+ ++-.+++| .|.+|.+|.
T Consensus 52 --------------------------------------------~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 52 --------------------------------------------AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred --------------------------------------------ecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 12456666655 77764 44457777 999999999
Q ss_pred CccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933 242 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 321 (497)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (497)
.. +..++.+ +.+|+..|.+++...++ . +++||.|.++++|-...-. .. +.+
T Consensus 88 ~~-~~~P~~~-------LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------~~-------------l~g 138 (745)
T KOG0301|consen 88 LS-QAEPLYT-------LKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------YS-------------LQG 138 (745)
T ss_pred cC-CCCchhh-------hhccccceeeeecCCcC-c-eEecccccceEEecchhhh------cc-------------cCC
Confidence 98 5556554 89999999999988887 4 9999999999999876422 22 356
Q ss_pred ccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933 322 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 401 (497)
Q Consensus 322 ~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 401 (497)
|...|++++.-|++.++..+.|..|++|.- ++.++++.+|...| +.+++-+++ .+++++.|
T Consensus 139 H~asVWAv~~l~e~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~V---------------RgL~vl~~~-~flScsND 199 (745)
T KOG0301|consen 139 HTASVWAVASLPENTYVTGSADKTIKLWKG---GTLLKTFSGHTDCV---------------RGLAVLDDS-HFLSCSND 199 (745)
T ss_pred cchheeeeeecCCCcEEeccCcceeeeccC---Cchhhhhccchhhe---------------eeeEEecCC-CeEeecCC
Confidence 789999999999985555557899999984 78999999999876 789998775 47899999
Q ss_pred CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecC
Q 010933 402 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPT 480 (497)
Q Consensus 402 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~ 480 (497)
|.|++|++ ++ .....+.+|.+-+.++.... +... ++++++|+. +||+.++......-....|.++.+-++
T Consensus 200 g~Ir~w~~-~g-e~l~~~~ghtn~vYsis~~~--~~~~-----Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~N 270 (745)
T KOG0301|consen 200 GSIRLWDL-DG-EVLLEMHGHTNFVYSISMAL--SDGL-----IVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLN 270 (745)
T ss_pred ceEEEEec-cC-ceeeeeeccceEEEEEEecC--CCCe-----EEEecCCceEEEeecCceEEEEecCccceEEEEEeeC
Confidence 99999999 44 34488999999999999655 3444 899999999 999776444333344459999999999
Q ss_pred CCEEEEEeCCceEEEe
Q 010933 481 TNLIACANGNSLFFHY 496 (497)
Q Consensus 481 ~~~la~~~~~~~~i~~ 496 (497)
|++++.|+++-++||+
T Consensus 271 gDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 271 GDIVVGGSDGRVRVFT 286 (745)
T ss_pred CCEEEeccCceEEEEE
Confidence 9988888888899997
No 125
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=183.06 Aligned_cols=294 Identities=14% Similarity=0.198 Sum_probs=224.8
Q ss_pred cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccc
Q 010933 86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 165 (497)
Q Consensus 86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (497)
.++..+++.||. +.|+.++. ......+.+++.|.+.+||.++++.
T Consensus 137 ~~~lvre~~GHk------------DGiW~Vaa--~~tqpi~gtASADhTA~iWs~Esg~--------------------- 181 (481)
T KOG0300|consen 137 KFRLVRELEGHK------------DGIWHVAA--DSTQPICGTASADHTARIWSLESGA--------------------- 181 (481)
T ss_pred eEeehhhhcccc------------cceeeehh--hcCCcceeecccccceeEEeecccc---------------------
Confidence 456778889998 99999988 3444578889999999999999887
Q ss_pred ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC--
Q 010933 166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL-- 242 (497)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~-- 242 (497)
|+.+| .+|.+.|+++.|++.+.+++++ .|++..||..
T Consensus 182 ---------------------------------------CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 182 ---------------------------------------CLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred ---------------------------------------ceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 55555 8999999999999999999999 9999999972
Q ss_pred ----ccCc--------------------------eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933 243 ----EISD--------------------------QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 243 ----~~~~--------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 292 (497)
.... ..-.++..+...+.+|.+.|.+..|-..| ..+++++.|.+..+||
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWD 300 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeee
Confidence 1100 00012222334577899999999999988 9999999999999999
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeecccccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL 371 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 371 (497)
+++++.+ ..+.+ |....+.++-+|..+++++++ |.+.++||++..-..+..|++|...+
T Consensus 301 VEtge~v----~~LtG-------------Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV--- 360 (481)
T KOG0300|consen 301 VETGEVV----NILTG-------------HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV--- 360 (481)
T ss_pred eccCcee----ccccC-------------cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccce---
Confidence 9999766 44444 667899999999999999885 59999999986455678899999875
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeecc
Q 010933 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYR 451 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d 451 (497)
+++.|..|. .+++|++|.+|+|||+++......+++. ..+++.++++.. +. .+|.-.++
T Consensus 361 ------------TS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g--~~-----iIAiPhDN 419 (481)
T KOG0300|consen 361 ------------TSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKG--HP-----IIAIPHDN 419 (481)
T ss_pred ------------eEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecC--Cc-----eEEeccCC
Confidence 789998775 4889999999999999998776666654 467788888763 22 25555555
Q ss_pred Cc-eec-CCCCCccc-----ccccCCCeEEEEEecCC---CEEEEEeCCceEEEe
Q 010933 452 QA-HEN-SSSGHHEL-----SYNLSSKLLHLAWHPTT---NLIACANGNSLFFHY 496 (497)
Q Consensus 452 ~~-~iw-~~~~~~~~-----~~~~~~~i~~l~~~p~~---~~la~~~~~~~~i~~ 496 (497)
.. +++ ..+..+.. -.+|...|.+++|..+. +++-+|-+..++-|+
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 55 888 23322222 34789999999997654 334444366666665
No 126
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.3e-25 Score=202.46 Aligned_cols=273 Identities=17% Similarity=0.230 Sum_probs=203.7
Q ss_pred EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933 114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 193 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (497)
.+... -|++++|++||.||.|++|++........
T Consensus 29 ~Lq~d-a~~~ryLfTgGRDg~i~~W~~~~d~~~~s--------------------------------------------- 62 (735)
T KOG0308|consen 29 ALQLD-APNGRYLFTGGRDGIIRLWSVTQDSNEPS--------------------------------------------- 62 (735)
T ss_pred hcccc-CCCCceEEecCCCceEEEeccccccCCcc---------------------------------------------
Confidence 34443 36778899999999999999875431110
Q ss_pred EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCc-eeeEEeecCCCccCCCCCCeEEEEE
Q 010933 194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEF 271 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (497)
..++.. ++.|...|+.+....+++.|+++ .|-+|++|+..... -+.. ++..|.+.|.++++
T Consensus 63 ---------~~~~as-me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-------tir~H~DYVkcla~ 125 (735)
T KOG0308|consen 63 ---------TPYIAS-MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-------TIRTHKDYVKCLAY 125 (735)
T ss_pred ---------cchhhh-hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh-------hhhcccchheeeee
Confidence 001122 27899999999999999999999 99999999998443 2333 37789999999999
Q ss_pred -eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEE
Q 010933 272 -HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLW 349 (497)
Q Consensus 272 -~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lw 349 (497)
.++. .++|+|+.|+.|.+||++++... ....+.. ........++..+|++++.++.|..+++|+ .+.+++|
T Consensus 126 ~ak~~-~lvaSgGLD~~IflWDin~~~~~--l~~s~n~----~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 126 IAKNN-ELVASGGLDRKIFLWDINTGTAT--LVASFNN----VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred cccCc-eeEEecCCCccEEEEEccCcchh--hhhhccc----cccccCCCCCccceeeeecCCcceEEEecCcccceEEe
Confidence 7776 89999999999999999987320 0011111 111122237789999999999998888875 5999999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeee
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 429 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 429 (497)
|.++ .+.+..+++|...+ ..+-.++||..++++|.||+|++||+...+.+ .++..|...++.+
T Consensus 199 Dprt-~~kimkLrGHTdNV---------------r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl-~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 199 DPRT-CKKIMKLRGHTDNV---------------RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL-ATYIVHKEGVWAL 261 (735)
T ss_pred cccc-ccceeeeeccccce---------------EEEEEcCCCCeEeecCCCceEEeeecccccee-eeEEeccCceEEE
Confidence 9998 88888899999876 68999999999999999999999999887554 8899999999999
Q ss_pred EeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecC
Q 010933 430 ILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPT 480 (497)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~ 480 (497)
..+++ ...+.+|+.|+. ..= ...........-..+|..+..+..
T Consensus 262 ~~~~s-------f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~ 308 (735)
T KOG0308|consen 262 QSSPS-------FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEH 308 (735)
T ss_pred eeCCC-------cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccc
Confidence 99874 233788888887 222 111222223344456666655543
No 127
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7.6e-24 Score=192.49 Aligned_cols=325 Identities=16% Similarity=0.251 Sum_probs=220.4
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
+|++.|.||...|.|.+||+|+.||+|+||.+.++.. + +.+...
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-----------------------v-------------r~~~~d 441 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-----------------------V-------------RTVQFD 441 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-----------------------E-------------EEEeec
Confidence 6999999999999999999999999999999998742 3 333334
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|.+|+|+|.++...||++-.+. +.|-+..-|..+... .... -+...+.+. ..+
T Consensus 442 ~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~--~t~e---ll~~~~~~~-------------------~p~ 496 (733)
T KOG0650|consen 442 SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG--PTKE---LLASAPNES-------------------EPD 496 (733)
T ss_pred ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc--chhh---hhhcCCCcc-------------------CCc
Confidence 779999998877766666665554 655554433211100 0000 000000000 012
Q ss_pred cceEEEeecCCccce-eeeeeccCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 190 MATKIANVGNSVHAR-CQKVYPHAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
..+..|.-....+.+ -+... -.|...|..+.|+..|.+|++. ....|.|.++.. ..... .+....+
T Consensus 497 ~~~~~W~~~~~~e~~~~v~~~-I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-~~sQ~-------PF~kskG 567 (733)
T KOG0650|consen 497 AAVVTWSRASLDELEKGVCIV-IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-RKSQS-------PFRKSKG 567 (733)
T ss_pred ccceeechhhhhhhccceEEE-EecCCccceeeeecCCceEEEeccCCCcceEEEEeccc-ccccC-------chhhcCC
Confidence 244455544222111 11111 4788999999999999999984 356888888872 22222 2555678
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 343 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~- 343 (497)
.|.++.|+|.. .+|++++. ..|++||+....++. +.+.+ ...|..|+++|.|..|+.|+.
T Consensus 568 ~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvK---kL~tg--------------~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 568 LVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVK---KLLTG--------------SKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred ceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHH---HHhcC--------------CeeeeeeeecCCCCeEEEecCC
Confidence 89999999998 67776665 479999998866552 22222 257999999999998888865
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 423 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 423 (497)
+.+..||+....++.+++..|...+ ++++|++.-.++++|+.||.+.||--.-...+.
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~av---------------r~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~------- 686 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAV---------------RSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLL------- 686 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhh---------------hhhhhccccceeeeecCCCcEEEEeeeeehhhh-------
Confidence 9999999998788999999998865 799999999999999999999998632211110
Q ss_pred cceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCC----CeEEEEEecCCCEEEEEeCC-ceEEEe
Q 010933 424 NENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSS----KLLHLAWHPTTNLIACANGN-SLFFHY 496 (497)
Q Consensus 424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~----~i~~l~~~p~~~~la~~~~~-~~~i~~ 496 (497)
....+. .+..+.+|.. .|.+..|||...+|.+++.+ .+.+|.
T Consensus 687 ---qnpliV----------------------------PlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 687 ---QNPLIV----------------------------PLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ---cCCceE----------------------------eeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 000000 1222333333 48899999999999988855 688874
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.3e-25 Score=205.26 Aligned_cols=245 Identities=19% Similarity=0.323 Sum_probs=193.1
Q ss_pred eEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 35 VSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 35 I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
+..+.|+. +.++|||++..|.|.+||+...- .-+.+..|..|+ ..|+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------------rnk~l~~f~EH~------------Rs~~ 137 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------------RNKLLTVFNEHE------------RSAN 137 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc--------------------cchhhhHhhhhc------------ccee
Confidence 34566764 56899999999999999997621 113467788999 9999
Q ss_pred EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933 114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 193 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (497)
++.|++ ....+|++||.||+|++||++..+.+..
T Consensus 138 ~ldfh~-tep~iliSGSQDg~vK~~DlR~~~S~~t--------------------------------------------- 171 (839)
T KOG0269|consen 138 KLDFHS-TEPNILISGSQDGTVKCWDLRSKKSKST--------------------------------------------- 171 (839)
T ss_pred eeeecc-CCccEEEecCCCceEEEEeeeccccccc---------------------------------------------
Confidence 999984 5567999999999999999987663322
Q ss_pred EEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933 194 IANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 271 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (497)
+ .+....|.++.|+| .+..|+++ +.|.+.+||++...++... +..|.++|.++.|
T Consensus 172 ---------------~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k-------~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 172 ---------------F-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK-------LTAHNGPVLCLNW 228 (839)
T ss_pred ---------------c-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH-------hhcccCceEEEee
Confidence 2 45677899999998 67788888 9999999999966666543 7899999999999
Q ss_pred eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE-EEEE---ecCeEE
Q 010933 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSR---DYMNLK 347 (497)
Q Consensus 272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~---~~~~i~ 347 (497)
+|++ .+||+|+.|+.|+|||..+.+.. ...++.. ..++.++.|-|...+ ||++ .|-.|+
T Consensus 229 hPnr-~~lATGGRDK~vkiWd~t~~~~~--~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~dtsV~ 291 (839)
T KOG0269|consen 229 HPNR-EWLATGGRDKMVKIWDMTDSRAK--PKHTINT--------------IAPVGRVKWRPARSYHLATCSMVVDTSVH 291 (839)
T ss_pred cCCC-ceeeecCCCccEEEEeccCCCcc--ceeEEee--------------cceeeeeeeccCccchhhhhhccccceEE
Confidence 9998 99999999999999999876432 1123322 367999999998765 4544 358999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCCC
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
|||++.+--+..++..|...+ +.++|.. |...|.+++.||.|..-.+++.
T Consensus 292 VWDvrRPYIP~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 292 VWDVRRPYIPYATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred EEeeccccccceeeeccCccc---------------cceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 999997777888999998865 6788876 5567889999999876655543
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=184.99 Aligned_cols=295 Identities=17% Similarity=0.190 Sum_probs=206.5
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
.+.|+++.|+|....|++++.||.++||.+++... ..++.+.-.. .+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N---------------------~~lqS~~l~~------------fP 259 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN---------------------PKLQSIHLEK------------FP 259 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC---------------------hhheeeeecc------------Cc
Confidence 47999999999999999999999999999987543 2233332223 77
Q ss_pred eeEEEEEecCCCC-EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 112 INRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 112 i~~l~~~~s~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
|.+.+| .|+|. .+++++.-..+..||+.+.+..++.......+ ..+-....+++..+++..+. .|
T Consensus 260 i~~a~f--~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~----------~~~e~FeVShd~~fia~~G~--~G 325 (514)
T KOG2055|consen 260 IQKAEF--APNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE----------KSMERFEVSHDSNFIAIAGN--NG 325 (514)
T ss_pred cceeee--cCCCceEEEecccceEEEEeeccccccccccCCCCccc----------chhheeEecCCCCeEEEccc--Cc
Confidence 999999 57888 88999999999999999888666543322210 01111112344445554443 44
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.|.+..... .+.+..+ .-.+.|..++|+.+++.|+++ .+|.|.+||++ ...+...+ ...-.-.-+++
T Consensus 326 ~I~lLhakT---~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-~~~~~~rf------~D~G~v~gts~ 393 (514)
T KOG2055|consen 326 HIHLLHAKT---KELITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-QNSCLHRF------VDDGSVHGTSL 393 (514)
T ss_pred eEEeehhhh---hhhhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC-CcceEEEE------eecCccceeee
Confidence 555544432 2233322 335678899999999998887 99999999999 45666553 11122233677
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec---CeE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNL 346 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i 346 (497)
+.++++ .+||+|+..|.|.|||.++-.. ...+.+...+......|++|.|+|++++||.++. ..+
T Consensus 394 ~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-----------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knal 461 (514)
T KOG2055|consen 394 CISLNG-SYLATGSDSGIVNIYDGNSCFA-----------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNAL 461 (514)
T ss_pred eecCCC-ceEEeccCcceEEEeccchhhc-----------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccce
Confidence 888999 8999999999999999765321 1223334445556678999999999999988753 889
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
|+-.+.. .....-+..... .+..+++++|||.+.+||.|..+|++.+|.+.
T Consensus 462 rLVHvPS-~TVFsNfP~~n~------------~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 462 RLVHVPS-CTVFSNFPTSNT------------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEeccc-eeeeccCCCCCC------------cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9888764 443333433322 33345899999999999999999999999874
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=181.01 Aligned_cols=278 Identities=15% Similarity=0.202 Sum_probs=193.0
Q ss_pred cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
+.+.+.++.++-.+-++..+.++-+..|.|+||++..... .+...
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~-~l~~~---------------------------------- 192 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN-ALSEP---------------------------------- 192 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhh-hhcCc----------------------------------
Confidence 3444778888775444555666668999999999865321 10000
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
...+-+ ...+++.++ .+|...=+.++|||- ...|++| .-+.|++|...+ + ..+ ..+..+.+|+
T Consensus 193 -----~~~~~~----s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g-~W~---vd~~Pf~gH~ 257 (440)
T KOG0302|consen 193 -----GLEVKD----SEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-G-SWK---VDQRPFTGHT 257 (440)
T ss_pred -----cccccc----cccCceEEe-cccCccceeeecccccccccccCccccceEeeeecc-C-cee---ecCccccccc
Confidence 000000 133566666 899999999999993 2357888 889999999884 3 222 1223477899
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 343 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 343 (497)
..|-.++|+|....+|++||-||.|+|||+|.+.... .+. .+.|.+.|+.+.|+.+-.+||+|+|
T Consensus 258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~----~~~-----------~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA----AVS-----------TKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cchhhhccCCccCceEEeeecCceEEEEEecCCCccc----eeE-----------eeccCCceeeEEccCCcceeeecCC
Confidence 9999999999987899999999999999999874321 111 1456688999999998889999976
Q ss_pred -CeEEEEecCC--CCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcce---
Q 010933 344 -MNLKLWDIRM--DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGG--- 416 (497)
Q Consensus 344 -~~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~--- 416 (497)
|.++|||+++ .++++..++.|..++ +++.|+|. ...|+++|.|..|.+||+.......
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pI---------------tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKYHKAPI---------------TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEeccCCe---------------eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 9999999985 357888999999875 79999994 5688899999999999987542210
Q ss_pred -EEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCE-EEEEeCCceEE
Q 010933 417 -ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNL-IACANGNSLFF 494 (497)
Q Consensus 417 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~-la~~~~~~~~i 494 (497)
.-..+-..-...+.|.. ...+.|..|.||+.-+- |++.+.+++.|
T Consensus 388 ~~a~~~L~dlPpQLLFVH---------------------------------qGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVH---------------------------------QGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred cccccchhcCCceeEEEe---------------------------------cchhHhhhheeccCCCCeEEEecccceeE
Confidence 00111001111122211 12347789999998755 45555889998
Q ss_pred Ee
Q 010933 495 HY 496 (497)
Q Consensus 495 ~~ 496 (497)
|.
T Consensus 435 fk 436 (440)
T KOG0302|consen 435 FK 436 (440)
T ss_pred EE
Confidence 85
No 131
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.4e-23 Score=184.88 Aligned_cols=262 Identities=18% Similarity=0.232 Sum_probs=194.8
Q ss_pred CCcceEEEEEcCCC--CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 31 DVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 31 h~~~I~~i~~sp~g--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+.+.|++++|+|.. +++|+|+..|.|-+||+.+.+. .+.-+..+..|.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------------d~d~v~~f~~hs----------- 234 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------------DKDGVYLFTPHS----------- 234 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------ccCceEEeccCC-----------
Confidence 67899999999964 5899999999999999964322 345566778898
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.+|.+|.|+| .+...++++|.||+|++-|++++....+...
T Consensus 235 -~~Vs~l~F~P-~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~------------------------------------- 275 (498)
T KOG4328|consen 235 -GPVSGLKFSP-ANTSQIYSSSYDGTIRLQDFEGNISEEVLSL------------------------------------- 275 (498)
T ss_pred -ccccceEecC-CChhheeeeccCceeeeeeecchhhHHHhhc-------------------------------------
Confidence 9999999976 4556899999999999999998764433211
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
......+.++.|+.+...++.+ .=|...+||.++.+..+.. +.-|+..|.
T Consensus 276 ----------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~-------~~lh~kKI~ 326 (498)
T KOG4328|consen 276 ----------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN-------LRLHKKKIT 326 (498)
T ss_pred ----------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh-------hhhhhcccc
Confidence 1123356678888877777777 6669999999976665543 567888999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-EecCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i 346 (497)
+++++|..+.+||+++.|++.+|||+|.-..... +....-.|...|.++.|||.+-.|++ +.|..|
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~I 393 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEI 393 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCC-------------cceecccccceeeeeEEcCCCCceEeeccCCce
Confidence 9999999989999999999999999987432211 11122467889999999998765666 567999
Q ss_pred EEEecC---CCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933 347 KLWDIR---MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 347 ~lwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
+|||.. ....+..++......- .--.. ....|.|+..++++|-.-..|-|+|-..++
T Consensus 394 Rv~dss~~sa~~~p~~~I~Hn~~t~-------RwlT~---fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 394 RVFDSSCISAKDEPLGTIPHNNRTG-------RWLTP---FKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred EEeecccccccCCccceeeccCccc-------ccccc---hhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 999983 2234444443221110 00011 368999999999999999999999977663
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.4e-23 Score=171.01 Aligned_cols=270 Identities=11% Similarity=0.199 Sum_probs=191.4
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|.+-|.|+.|.+-|+.+|+|+.|++|+|||.+.... .+.+....+.|+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------------~W~~Ts~Wrah~----------- 59 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------------TWSCTSSWRAHD----------- 59 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------------ceEEeeeEEecC-----------
Confidence 35889999999999999999999999999999765432 567778889999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+.|..+.|.+..=|+.+++++.|+++.||.-.......
T Consensus 60 -~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~----------------------------------------- 97 (361)
T KOG2445|consen 60 -GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA----------------------------------------- 97 (361)
T ss_pred -CcEEEEEecCccccceEEEEecCCceeeeeeccccccc-----------------------------------------
Confidence 99999999865568999999999999999753111000
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCceeeEEeecC------CCcc
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMK------PSNM 259 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~------~~~~ 259 (497)
.-+-| ..++.+......|+++.|.| -|-.|+++ .||.++||+.-... .+..+.+. +...
T Consensus 98 --~~~~W---------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 98 --HGRRW---------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-NLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred --cccee---------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-ccccchhhhhhhhccCCc
Confidence 00011 11112256678899999998 46677888 99999999876222 12211111 0123
Q ss_pred CCCCCCeEEEEEeCCC--CcEEEEEeCC-----CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933 260 DDLTEVITSAEFHPIY--CNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 332 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~--~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 332 (497)
..+..+..|+.|+|.. +.+||+|+.+ +.++||....+..... ++ ..+.+|..+|+.++|.
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~--kv-----------a~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL--KV-----------AELPDHTDPIRDISWA 232 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee--ee-----------hhcCCCCCcceeeeec
Confidence 3466778899999763 3578888776 5788888765431111 11 1234677999999999
Q ss_pred eCC----CEEEEEe-cCeEEEEecCCCC-------------------ceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933 333 NDG----QHLLSRD-YMNLKLWDIRMDS-------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 388 (497)
Q Consensus 333 ~~g----~~l~~~~-~~~i~lwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (497)
|+- .+||+++ || |+||.+.... +.+..+..|...+ +.+.|
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V---------------Wrv~w 296 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV---------------WRVRW 296 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce---------------EEEEE
Confidence 963 4677775 47 9999987311 1233445555543 89999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC
Q 010933 389 SGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 389 s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
.-.|..|++.|.||.|++|...-
T Consensus 297 NmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eeeeeEEeecCCCceeeehhhhh
Confidence 99999999999999999998653
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.4e-24 Score=199.65 Aligned_cols=234 Identities=16% Similarity=0.168 Sum_probs=180.5
Q ss_pred CeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933 216 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 293 (497)
Q Consensus 216 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~ 293 (497)
.+..+.|.. +.++|+++ ..|.|.+||+....+.... ..+..|+..++++.|++..+++|++|+.||.|++||+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-----~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-----TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-----hHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 345677764 56788999 9999999999852221111 1267899999999999999899999999999999999
Q ss_pred cCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEec-CeEEEEecCCCCceeeeeeecccccccc
Q 010933 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL 371 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 371 (497)
|..+.. ..+.. ....|..+.|+|. +.+++++.| |.+++||++...++...+.+|.+++
T Consensus 164 R~~~S~----~t~~~-------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV--- 223 (839)
T KOG0269|consen 164 RSKKSK----STFRS-------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV--- 223 (839)
T ss_pred eccccc----ccccc-------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce---
Confidence 986543 22222 3468999999994 567777877 9999999999889999999999986
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeec-
Q 010933 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLY- 450 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~- 450 (497)
.++.|+|++.+|||||.|+.|+||++.+.+.....--....++.++.|.|.+... ||+++.
T Consensus 224 ------------~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h------LAtcsmv 285 (839)
T KOG0269|consen 224 ------------LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH------LATCSMV 285 (839)
T ss_pred ------------EEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch------hhhhhcc
Confidence 7899999999999999999999999987655434444556899999999975533 555553
Q ss_pred -cCc-eec---CCCCCcccccccCCCeEEEEEec-CCCEEEEEeCCce
Q 010933 451 -RQA-HEN---SSSGHHELSYNLSSKLLHLAWHP-TTNLIACANGNSL 492 (497)
Q Consensus 451 -d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p-~~~~la~~~~~~~ 492 (497)
|-. +|| .+.-+...+..|+..++.++|-. |-..|-+++.|++
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccH
Confidence 333 999 33344556778999999999976 3445666665553
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=190.75 Aligned_cols=301 Identities=18% Similarity=0.209 Sum_probs=211.6
Q ss_pred EEEEcC---CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 37 AIEFDK---TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 37 ~i~~sp---~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
+..|++ ....||.+.+||.|.++|.....-. ++-.-+.....|. +.|.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-----------------~ee~~lk~~~aH~------------nAif 104 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-----------------LEERQLKKPLAHK------------NAIF 104 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcc-----------------hhhhhhccccccc------------ceeE
Confidence 467776 3457999999999999998764320 0112245567788 9999
Q ss_pred EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933 114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 193 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (497)
++.|. |....|++++.|.++++||+.+..+...
T Consensus 105 Dl~wa--pge~~lVsasGDsT~r~Wdvk~s~l~G~--------------------------------------------- 137 (720)
T KOG0321|consen 105 DLKWA--PGESLLVSASGDSTIRPWDVKTSRLVGG--------------------------------------------- 137 (720)
T ss_pred eeccC--CCceeEEEccCCceeeeeeeccceeecc---------------------------------------------
Confidence 99995 5667899999999999999998774431
Q ss_pred EEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCcee------eE---Ee-----ecCC-
Q 010933 194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQC------FN---IV-----DMKP- 256 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~------~~---~~-----~~~~- 256 (497)
.. +.+|...|.+++|.|.. ..|++| .||.|.|||++-.... .. .. ..++
T Consensus 138 -------------~~-~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 138 -------------RL-NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred -------------ee-ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 01 26999999999999954 566778 9999999999843310 00 00 0011
Q ss_pred ----CccCCCCCCeEE---EEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCccccccc---ccc
Q 010933 257 ----SNMDDLTEVITS---AEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI---IAS 325 (497)
Q Consensus 257 ----~~~~~~~~~i~~---~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 325 (497)
.+...+...|.+ +.+..|. ..||+++. |+.|+|||++.......... .....+.-| .-.
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep---------~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEP---------RGSDKYPTHSKRSVG 273 (720)
T ss_pred hccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCC---------CcccCccCcccceee
Confidence 122344555555 5566666 88999988 99999999997543211100 000011111 245
Q ss_pred ccEEEEeeCCCEEEE-EecCeEEEEecCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933 326 ISDIKFANDGQHLLS-RDYMNLKLWDIRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 403 (497)
Q Consensus 326 i~~~~~s~~g~~l~~-~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 403 (497)
+.++..+..|.+|++ +.|+.|++|++...+ .++..+.++... ..+ ..-..+||+.+|++|+.|..
T Consensus 274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~-----------sf~--vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS-----------SFY--VKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred eEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc-----------eee--eeeecCCCCceEeccCCCcc
Confidence 777777777887766 588999999997522 345555554432 121 35678899999999999999
Q ss_pred EEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 404 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 404 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
.++|.+.+.+.....+.+|.-.|..+++.|...... +++++|-. ++|
T Consensus 341 ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v------~TcSdD~~~kiW 388 (720)
T KOG0321|consen 341 AYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPV------ATCSDDFRVKIW 388 (720)
T ss_pred eeeeeecCccCChhhhhCcceEEEEEeeccccCCCc------eeeccCcceEEE
Confidence 999999998888888999999999999999755554 66688877 999
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.6e-23 Score=182.95 Aligned_cols=236 Identities=18% Similarity=0.279 Sum_probs=181.0
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|.. +..+.+|= ..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-----------------------L~v~~aHY------------Q~ 125 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-----------------------LNVLSAHY------------QS 125 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccH-----------------------HHHHHhhc------------cc
Confidence 57899999999999999999999999999999854 77788998 88
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
|+++.| +.|+.+|++||.||.|.+|.+..--
T Consensus 126 ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv----------------------------------------------- 156 (476)
T KOG0646|consen 126 ITCLKF--SDDGSHIITGSKDGAVLVWLLTDLV----------------------------------------------- 156 (476)
T ss_pred eeEEEE--eCCCcEEEecCCCccEEEEEEEeec-----------------------------------------------
Confidence 999999 6899999999999999999875421
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+.......+++..+ ..|+-+|+++...+. ...++++ .|.++++||+. .+..+..+ .....+.+
T Consensus 157 ----~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS-~g~LLlti--------~fp~si~a 222 (476)
T KOG0646|consen 157 ----SADNDHSVKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS-LGVLLLTI--------TFPSSIKA 222 (476)
T ss_pred ----ccccCCCccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEec-cceeeEEE--------ecCCccee
Confidence 11111122355555 899999999988654 4467777 99999999999 45444432 24578999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc--cccEEEEeeCCCEEEEEe-cCe
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA--SISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
++.+|.+ ..+++|+.+|.|.+.++..-.-....+..-.. .........+.+|.+ .|+|++++-||.+|++|+ ||.
T Consensus 223 v~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~-~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~ 300 (476)
T KOG0646|consen 223 VALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR-HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK 300 (476)
T ss_pred EEEcccc-cEEEecCCcceEEeeehhcCCccccccccccc-ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence 9999999 99999999999999988653311110011111 222334455677887 999999999999999996 599
Q ss_pred EEEEecCCCCceeeeeeeccccc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLR 368 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~ 368 (497)
++|||+.. .++++++....++|
T Consensus 301 VcvWdi~S-~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 301 VCVWDIYS-KQCIRTLQTSKGPV 322 (476)
T ss_pred EEEEecch-HHHHHHHhhhcccc
Confidence 99999986 78888877555554
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.2e-22 Score=175.88 Aligned_cols=279 Identities=16% Similarity=0.231 Sum_probs=205.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|++|.|+ |....+++++.|++++||.+++..-..+..
T Consensus 214 ~~I~sv~FH--p~~plllvaG~d~~lrifqvDGk~N~~lqS--------------------------------------- 252 (514)
T KOG2055|consen 214 GGITSVQFH--PTAPLLLVAGLDGTLRIFQVDGKVNPKLQS--------------------------------------- 252 (514)
T ss_pred CCceEEEec--CCCceEEEecCCCcEEEEEecCccChhhee---------------------------------------
Confidence 889999995 677899999999999999998654222110
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC-CCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i 266 (497)
. .-...+|.+..|.|+|. .++++ ....++.||+. ..+..++ + .+.++ +..+
T Consensus 253 -------------------~-~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle-~ak~~k~---~--~~~g~e~~~~ 306 (514)
T KOG2055|consen 253 -------------------I-HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE-TAKVTKL---K--PPYGVEEKSM 306 (514)
T ss_pred -------------------e-eeccCccceeeecCCCceEEEecccceEEEEeecc-ccccccc---c--CCCCcccchh
Confidence 0 23356899999999999 77777 99999999998 4444433 1 12233 3567
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCe
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMN 345 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~ 345 (497)
....+++++ ++|+..+..|.|.+....+++.+ ..+.. .+.+..++|+.+|+.|++. ++|.
T Consensus 307 e~FeVShd~-~fia~~G~~G~I~lLhakT~eli----~s~Ki--------------eG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 307 ERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELI----TSFKI--------------EGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred heeEecCCC-CeEEEcccCceEEeehhhhhhhh----heeee--------------ccEEeeEEEecCCcEEEEEcCCce
Confidence 788999999 99999999999999999998776 44444 3679999999999877664 6799
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----CcceEEEe
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG-----SAGGITVE 420 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~-----~~~~~~~~ 420 (497)
|.+||++. ..++.++......- -++++.++++.|||+|+..|.|.|||.++- ......+.
T Consensus 368 V~v~nl~~-~~~~~rf~D~G~v~--------------gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 368 VYVWNLRQ-NSCLHRFVDDGSVH--------------GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred EEEEecCC-cceEEEEeecCccc--------------eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 99999997 68888776544321 158999999999999999999999996542 12234555
Q ss_pred ccCcceeeeEeecCCCcccccccceeEeeccCc---eecC-CCCCcc-ccc---ccCCCeEEEEEecCCCEEEEEeCCc-
Q 010933 421 AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA---HENS-SSGHHE-LSY---NLSSKLLHLAWHPTTNLIACANGNS- 491 (497)
Q Consensus 421 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~---~iw~-~~~~~~-~~~---~~~~~i~~l~~~p~~~~la~~~~~~- 491 (497)
.-...|..+.|++ ++++ ||.++.-.. ++=+ +..... .++ ..-..|++|+|+|.+.+||+|...+
T Consensus 433 NLtt~Itsl~Fn~--d~qi-----LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 433 NLTTAITSLQFNH--DAQI-----LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred hhheeeeeeeeCc--chhh-----hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 6677899999999 7777 777776655 2221 111110 111 1123789999999999999999554
Q ss_pred eEEEe
Q 010933 492 LFFHY 496 (497)
Q Consensus 492 ~~i~~ 496 (497)
+.+|.
T Consensus 506 v~l~k 510 (514)
T KOG2055|consen 506 VHLFK 510 (514)
T ss_pred eeeEe
Confidence 77774
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.4e-24 Score=201.45 Aligned_cols=218 Identities=16% Similarity=0.274 Sum_probs=177.3
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.++.. ...++.+++|+.|..+.+|.+..-..
T Consensus 29 aav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~kp~~-------------------------------------------- 62 (825)
T KOG0267|consen 29 AAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGKPNA-------------------------------------------- 62 (825)
T ss_pred hhhceeee--eccceeeccCCCceeeccccccCCch--------------------------------------------
Confidence 77888887 35678899999999999998754321
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+..+ .+|..+|.++.|+++..+|++| .+|+|++||++ ..+.+. ++.+|...+.+
T Consensus 63 ----------------i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr-------tLtgh~~~~~s 117 (825)
T KOG0267|consen 63 ----------------ITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR-------TLTGHLLNITS 117 (825)
T ss_pred ----------------hhee-eccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh-------hhhccccCcce
Confidence 1112 7999999999999999999999 99999999999 555554 38899999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~ 347 (497)
+.|+|.+ .++|.++.|+.+++||.+..... +.+.. |...+..+.|+|+|++++.|.+ ..++
T Consensus 118 v~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~----~~~~s-------------~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 118 VDFHPYG-EFFASGSTDTDLKIWDIRKKGCS----HTYKS-------------HTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred eeeccce-EEeccccccccceehhhhccCce----eeecC-------------CcceeEEEeecCCCceeeccCCcceee
Confidence 9999999 89999999999999999965443 44433 5678999999999999999865 9999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
|||+.. ++.+..|+.|+..+ ..+.|+|..-++++||.|+++++||+++-+.+ ...+.....|.
T Consensus 180 i~d~~a-gk~~~ef~~~e~~v---------------~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I-~s~~~~~~~v~ 242 (825)
T KOG0267|consen 180 IWDLTA-GKLSKEFKSHEGKV---------------QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI-SSGKPETDGVR 242 (825)
T ss_pred eecccc-cccccccccccccc---------------cccccCchhhhhccCCCCceeeeeccceeEEe-eccCCccCCce
Confidence 999986 99999999998865 57899999999999999999999999976332 33333344455
Q ss_pred eeEeec
Q 010933 428 KPILQA 433 (497)
Q Consensus 428 ~~~~~~ 433 (497)
+.+|.+
T Consensus 243 ~~~fn~ 248 (825)
T KOG0267|consen 243 SLAFNP 248 (825)
T ss_pred eeeecC
Confidence 555544
No 138
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=4.9e-21 Score=180.91 Aligned_cols=330 Identities=12% Similarity=0.156 Sum_probs=236.3
Q ss_pred eEEEEEcCCC--CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 35 VSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 35 I~~i~~sp~g--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
|+++. +|.- +.++.|+.+|.++||++.+++. +.+++++. ..|
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~-----------------------v~~f~~~~------------s~I 205 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV-----------------------VYTFQEFF------------SRI 205 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcE-----------------------EEEecccc------------cce
Confidence 66664 5542 5688999999999999999854 88899998 889
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
+++.= +|-=..++.|..+|+|.++++..++.+.
T Consensus 206 T~ieq--sPaLDVVaiG~~~G~ViifNlK~dkil~--------------------------------------------- 238 (910)
T KOG1539|consen 206 TAIEQ--SPALDVVAIGLENGTVIIFNLKFDKILM--------------------------------------------- 238 (910)
T ss_pred eEecc--CCcceEEEEeccCceEEEEEcccCcEEE---------------------------------------------
Confidence 99987 4555689999999999999998877332
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEE-EE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
.| +...+.|++++|..||+.+. +| ..|.+.+||++ .++..... ...|.+.|....
T Consensus 239 ---------------sF-k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe-~kkl~~v~------~nah~~sv~~~~ 295 (910)
T KOG1539|consen 239 ---------------SF-KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLE-KKKLINVT------RNAHYGSVTGAT 295 (910)
T ss_pred ---------------EE-EccccceeEEEeccCCCeeEEeccCCceEEEEEcC-CCeeeeee------eccccCCcccce
Confidence 22 22258999999999988665 46 78999999999 55555442 457889999999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCC-----------------------------------
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS----------------------------------- 315 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 315 (497)
|-|.. ..+++++.|+.+++|-..++.-....++.-.+|...+..
T Consensus 296 fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~ 374 (910)
T KOG1539|consen 296 FLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELG 374 (910)
T ss_pred ecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhc
Confidence 99988 899999999998888555321110000110110000000
Q ss_pred -------------c-----------------------------------------------------cccccccccccEE
Q 010933 316 -------------K-----------------------------------------------------SFFTEIIASISDI 329 (497)
Q Consensus 316 -------------~-----------------------------------------------------~~~~~~~~~i~~~ 329 (497)
. ..+......++++
T Consensus 375 ~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av 454 (910)
T KOG1539|consen 375 QLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAV 454 (910)
T ss_pred ccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEE
Confidence 0 0011223678899
Q ss_pred EEeeCCCEEEEEec-CeEEEEecCCCCceeeee---eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933 330 KFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 330 ~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 405 (497)
+.++-|++.+.|.. |.|-+|+++. +....++ ..|...+ ++++...-++.+++++.+|.++
T Consensus 455 ~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V---------------~gla~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGEV---------------TGLAVDGTNRLLVSAGADGILK 518 (910)
T ss_pred EEeccCceEEEeccCCeEEEEEccc-CeeecccccCccccCce---------------eEEEecCCCceEEEccCcceEE
Confidence 99999999999854 9999999997 7777777 4676654 7899998899999999999999
Q ss_pred EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCC
Q 010933 406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTN 482 (497)
Q Consensus 406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~ 482 (497)
+||..... ....++- ...+..+..+.. ...++.+.+|=. .+. .+........+|...|++++|||||+
T Consensus 519 fw~f~~k~-l~~~l~l-~~~~~~iv~hr~-------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 519 FWDFKKKV-LKKSLRL-GSSITGIVYHRV-------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred EEecCCcc-eeeeecc-CCCcceeeeeeh-------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 99998764 2233332 222333333321 123566655555 555 33344566789999999999999999
Q ss_pred EEEEEe-CCceEEEe
Q 010933 483 LIACAN-GNSLFFHY 496 (497)
Q Consensus 483 ~la~~~-~~~~~i~~ 496 (497)
+|++++ +..+++|.
T Consensus 590 WlisasmD~tIr~wD 604 (910)
T KOG1539|consen 590 WLISASMDSTIRTWD 604 (910)
T ss_pred EEEEeecCCcEEEEe
Confidence 999999 56799996
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-20 Score=173.97 Aligned_cols=394 Identities=15% Similarity=0.116 Sum_probs=261.4
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
..+.|++++.+|.++.++.|+.||.+..++...+++ ++...|.-.+ +
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---------------------~~~r~l~rq~------------s 155 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---------------------TYKRSLMRQK------------S 155 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceE---------------------EEEeeccccc------------c
Confidence 367999999999999999999999888888776654 3444454445 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
+|.++.| ++++..+++|+.||.|++||+..+....+.+...... ...+..++.....-....++++. +.|
T Consensus 156 RvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l------~k~~~~iVWSv~~Lrd~tI~sgD--S~G 225 (691)
T KOG2048|consen 156 RVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL------SKREPTIVWSVLFLRDSTIASGD--SAG 225 (691)
T ss_pred eEEEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeeccccc------ccCCceEEEEEEEeecCcEEEec--CCc
Confidence 8999999 7899999999999999999999887555332222110 00011111111122233344443 478
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.+++||.... ..++.+ ..|...|.+++.++++..++++ .|+.|..|.....+..... ......|...+.++
T Consensus 226 ~V~FWd~~~g---TLiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~----~~~r~~h~hdvrs~ 297 (691)
T KOG2048|consen 226 TVTFWDSIFG---TLIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI----NSRRDLHAHDVRSM 297 (691)
T ss_pred eEEEEcccCc---chhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee----eccccCCcccceee
Confidence 9999999854 344444 6889999999999998888887 9999999887744432111 12356788999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccc-------------------cccceeccccccc--------C-------C
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-------------------HSARILRDAAESH--------G-------S 315 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------------------~~~~~~~~~~~~~--------~-------~ 315 (497)
+..++ .+++|+.|..+.+--.+..+... .....+..|.... . -
T Consensus 298 av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~L 374 (691)
T KOG2048|consen 298 AVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHL 374 (691)
T ss_pred eeecc---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhh
Confidence 99875 68899999988887665421110 0001111111000 0 0
Q ss_pred ccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE
Q 010933 316 KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 395 (497)
Q Consensus 316 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 395 (497)
...+......|.+.++||+|++++.++-...++|.++... .+.......... ...+...+.|+-|+..+
T Consensus 375 lkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~----------~~~~a~~i~ftid~~k~ 443 (691)
T KOG2048|consen 375 LKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPL----------ALLDASAISFTIDKNKL 443 (691)
T ss_pred eeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEeccchh----------hhccceeeEEEecCceE
Confidence 0011223457899999999999999988899999998644 343333222211 11122578899898888
Q ss_pred EEEe-CCCcEEEEEcCCCCcce---EEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCccc--cccc
Q 010933 396 ATGS-YSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHEL--SYNL 468 (497)
Q Consensus 396 ~s~~-~dg~i~vw~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~--~~~~ 468 (497)
+.++ .+..+.+++.++..... ..-++....|..++.++ +|.+ +|..+.++. .+|+....... ....
T Consensus 444 ~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss--dG~y-----iaa~~t~g~I~v~nl~~~~~~~l~~rl 516 (691)
T KOG2048|consen 444 FLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS--DGNY-----IAAISTRGQIFVYNLETLESHLLKVRL 516 (691)
T ss_pred EEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC--CCCE-----EEEEeccceEEEEEcccceeecchhcc
Confidence 8777 77888898887754321 11124556788888888 7877 899998888 99954433222 2256
Q ss_pred CCCeEEEEEecC-CCEEEEEe-CCceEEEe
Q 010933 469 SSKLLHLAWHPT-TNLIACAN-GNSLFFHY 496 (497)
Q Consensus 469 ~~~i~~l~~~p~-~~~la~~~-~~~~~i~~ 496 (497)
...|+.++++|. -+.|+++. ++.+|-|.
T Consensus 517 n~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 517 NIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred CcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 689999999964 56677776 55577664
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6.7e-22 Score=164.91 Aligned_cols=304 Identities=13% Similarity=0.157 Sum_probs=200.6
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+.|+++..-+ ..|+++++|+.||.|.+||+++.....-..+-..
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k----------------------------------- 87 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK----------------------------------- 87 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeh-----------------------------------
Confidence 8899999963 6799999999999999999986442211000000
Q ss_pred cceEEEeecCCccceee--eeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 190 MATKIANVGNSVHARCQ--KVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
..|+ +.-..+|...|.++.|-| |...+.++ .|.++++||.++.+ .... ...++.
T Consensus 88 -------------~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ-~a~~--------F~me~~ 145 (397)
T KOG4283|consen 88 -------------HKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ-EAVD--------FKMEGK 145 (397)
T ss_pred -------------eeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce-eeEE--------eecCce
Confidence 0010 001258899999999998 55566777 99999999999443 3332 134567
Q ss_pred eEEEEEeCCCC--cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-E-
Q 010933 266 ITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R- 341 (497)
Q Consensus 266 i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~- 341 (497)
|++-+++|-.. -++|+|..|-.|++.|+.+|... +.+. +|...|.++.|+|..+++++ |
T Consensus 146 VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----H~Ls-------------GHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 146 VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----HTLS-------------GHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred eehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----eeec-------------cccCceEEEEeccCceeEEEecC
Confidence 77778877531 47888888999999999998765 4444 47789999999999988765 4
Q ss_pred ecCeEEEEecCCCCceeeeeeecccccccccc--cCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE
Q 010933 342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 419 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 419 (497)
.||.|++||++.-..++..+..|....+.+.. .-.+.. +.+++|+.|+.++++++.|.++++|+..+|+.-...+
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk---vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK---VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF 285 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccce---eeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence 46999999999755788888877753322211 111112 3689999999999999999999999999885432222
Q ss_pred e--ccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceE
Q 010933 420 E--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLF 493 (497)
Q Consensus 420 ~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~ 493 (497)
- .|.. -...++... .... ..++--=.++. .+. ..+..+..+..|-+.|.+.++.|+-+.+.++. +.+++
T Consensus 286 g~~~~n~-~~~~~~~~~-~~~s---~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~ 360 (397)
T KOG4283|consen 286 GPIIHNQ-TTSFAVHIQ-SMDS---DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIY 360 (397)
T ss_pred ccccccc-cccceEEEe-eccc---ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccc
Confidence 1 1111 011111100 0000 00111111122 333 33344455567778999999999988888888 66688
Q ss_pred EEe
Q 010933 494 FHY 496 (497)
Q Consensus 494 i~~ 496 (497)
.|.
T Consensus 361 ~w~ 363 (397)
T KOG4283|consen 361 MWS 363 (397)
T ss_pred ccc
Confidence 875
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.3e-20 Score=172.57 Aligned_cols=290 Identities=8% Similarity=0.066 Sum_probs=191.0
Q ss_pred CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCC
Q 010933 44 GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG 123 (497)
Q Consensus 44 g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~ 123 (497)
++.+++++.|+.|++||+.+++. +..+..+. .+..++| ++++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~~-------------~~~~l~~--~~dg 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVGQ-------------RPRGITL--SKDG 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECCC-------------CCCceEE--CCCC
Confidence 35788999999999999987642 44555443 3677999 6788
Q ss_pred CEE-EEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcc
Q 010933 124 SMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 202 (497)
Q Consensus 124 ~~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (497)
+.+ ++++.++.|++||..+++....
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~------------------------------------------------------ 68 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGT------------------------------------------------------ 68 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEe------------------------------------------------------
Confidence 876 4567889999999987663321
Q ss_pred ceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933 203 ARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 280 (497)
Q Consensus 203 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 280 (497)
+ ..+. .+..++|+|+++.+++ + .++.+++||++ ..+.+.. +. +...+.+++|+|++ .+++
T Consensus 69 ------~-~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~-~~~~~~~-------~~-~~~~~~~~~~~~dg-~~l~ 130 (300)
T TIGR03866 69 ------L-PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIE-TRKVLAE-------IP-VGVEPEGMAVSPDG-KIVV 130 (300)
T ss_pred ------c-cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECC-CCeEEeE-------ee-CCCCcceEEECCCC-CEEE
Confidence 1 1221 2456889999997765 4 68999999998 4444433 21 22346789999999 8888
Q ss_pred EEeCCC-eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e-cCeEEEEecCCCCce
Q 010933 281 YSSSRG-FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-YMNLKLWDIRMDSTP 357 (497)
Q Consensus 281 ~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~~~i~lwd~~~~~~~ 357 (497)
+++.++ .+.+||.++++.. ..... ......++|+|+|++|+++ . ++.|++||+++ ++.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~ 191 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIV----DNVLV--------------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKV 191 (300)
T ss_pred EEecCCCeEEEEeCCCCeEE----EEEEc--------------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-cee
Confidence 888765 5778898876433 11111 1235779999999988654 3 59999999986 666
Q ss_pred eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE-EeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCC
Q 010933 358 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 436 (497)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 436 (497)
+..+..+...... ... ....++|+|++++++. .+.++.+.+||+.+++.. ..+ .+...+.+++|+| +
T Consensus 192 ~~~~~~~~~~~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~~~~~~--~ 259 (300)
T TIGR03866 192 IKKITFEIPGVHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LVGQRVWQLAFTP--D 259 (300)
T ss_pred eeeeeeccccccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-EeCCCcceEEECC--C
Confidence 6665433211000 000 0136899999998654 455778999999877543 333 3445788999998 5
Q ss_pred cccccccceeEe-eccCc-eecCCC-CCcccccccCCCeEEEEEec
Q 010933 437 ARRSSLSNLTRG-LYRQA-HENSSS-GHHELSYNLSSKLLHLAWHP 479 (497)
Q Consensus 437 ~~~~~~~~l~~~-~~d~~-~iw~~~-~~~~~~~~~~~~i~~l~~~p 479 (497)
+.. ++++ +.++. .+|... ...............++++|
T Consensus 260 g~~-----l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 260 EKY-----LLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCE-----EEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 555 6665 45677 999333 22222223445556777664
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.9e-21 Score=162.64 Aligned_cols=279 Identities=16% Similarity=0.223 Sum_probs=202.7
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
..++.| ++.|.+|++|+.||.|.|||+.+....++
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~------------------------------------------- 60 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM------------------------------------------- 60 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence 688999 78999999999999999999988663332
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
+.+|..+|.+++|+++|+.|+++ .|..|.+||+.. +.+.+.+ ...++|+.+.
T Consensus 61 ------------------lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~ri--------rf~spv~~~q 113 (405)
T KOG1273|consen 61 ------------------LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRI--------RFDSPVWGAQ 113 (405)
T ss_pred ------------------hhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEE--------EccCccceee
Confidence 37999999999999999999999 999999999994 4455442 3568999999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lw 349 (497)
|+|...+.+++.-.+..-.+-++..+.. +.+....+ ... .....+..|.+.|+++++|+. |.+.++
T Consensus 114 ~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~d~d--~dl------n~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 114 WHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPKDDD--GDL------NSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred eccccCCeEEEEEecCCcEEEEecCCce-----eeccCCCc--ccc------ccccccccccCCCCEEEEecCcceEEEE
Confidence 9998756666655555566666654321 22222010 000 112334478999999999966 999999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC----C--cc--eEEEe-
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG----S--AG--GITVE- 420 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~----~--~~--~~~~~- 420 (497)
|..+ .+++..++..... .|..+.++..|++|+.-+.|..|+.|+++.- + ++ .+.++
T Consensus 181 ~a~t-~e~vas~rits~~--------------~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 181 DAET-LECVASFRITSVQ--------------AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred ecch-heeeeeeeechhe--------------eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 9997 7888877755411 1258999999999999999999999998731 1 11 01111
Q ss_pred -ccCcceeeeEeecCCCcccccccceeEeeccCc--eec--CCCCCcccccccC-CCeEEEEEecCCCEEEEEeCCceEE
Q 010933 421 -AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA--HEN--SSSGHHELSYNLS-SKLLHLAWHPTTNLIACANGNSLFF 494 (497)
Q Consensus 421 -~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~--~iw--~~~~~~~~~~~~~-~~i~~l~~~p~~~~la~~~~~~~~i 494 (497)
..+.+-++.+|+. +|.+ ++.|+...- +|| ..|.+...+-+.. ....++.|+|-...+++-..+.++|
T Consensus 246 vVNk~~Wk~ccfs~--dgeY-----v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~i 318 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSG--DGEY-----VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYI 318 (405)
T ss_pred HHhhhhhhheeecC--CccE-----EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEE
Confidence 1233456677877 6666 555553333 899 5666666666666 5677899999999999999999999
Q ss_pred EeC
Q 010933 495 HYA 497 (497)
Q Consensus 495 ~~~ 497 (497)
|++
T Consensus 319 w~~ 321 (405)
T KOG1273|consen 319 WAV 321 (405)
T ss_pred EEe
Confidence 973
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5e-22 Score=175.75 Aligned_cols=230 Identities=15% Similarity=0.103 Sum_probs=178.0
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|.+++- +|+|.+++.++..|.+++|.+.+|.+..+
T Consensus 82 g~v~al~s--~n~G~~l~ag~i~g~lYlWelssG~LL~v----------------------------------------- 118 (476)
T KOG0646|consen 82 GPVHALAS--SNLGYFLLAGTISGNLYLWELSSGILLNV----------------------------------------- 118 (476)
T ss_pred cceeeeec--CCCceEEEeecccCcEEEEEeccccHHHH-----------------------------------------
Confidence 78999988 68888888888999999999999986653
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC-CccCCCCCCeE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMDDLTEVIT 267 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~ 267 (497)
+.+|-..|+++.|+.||.+|++| .||.|.+|.+...-........+| ..+..|.-+|+
T Consensus 119 --------------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT 178 (476)
T KOG0646|consen 119 --------------------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT 178 (476)
T ss_pred --------------------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeE
Confidence 26889999999999999999999 999999998752111111101111 34778999999
Q ss_pred EEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCe
Q 010933 268 SAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 345 (497)
Q Consensus 268 ~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~ 345 (497)
++...+.| ...++++|.|.++++||+..+.++ ..+.. ...+.+++++|-++.+++|+ +|.
T Consensus 179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL----lti~f--------------p~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 179 DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL----LTITF--------------PSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred EEEecCCCccceEEEecCCceEEEEEeccceee----EEEec--------------CCcceeEEEcccccEEEecCCcce
Confidence 99988764 258999999999999999998765 22222 25799999999999999985 499
Q ss_pred EEEEecCCCC---------------ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 346 LKLWDIRMDS---------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 346 i~lwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
|.+.++.... ..+..+.+|.+. ..|++++++-||.+|++|+.||+++|||+.
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-------------~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-------------SAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCC-------------cceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 9888775311 123344455541 124799999999999999999999999999
Q ss_pred CCCcceEEEeccCcceeeeEeecC
Q 010933 411 VGSAGGITVEAGKNENRKPILQAA 434 (497)
Q Consensus 411 ~~~~~~~~~~~~~~~v~~~~~~~~ 434 (497)
+.+.+ +++....++|+.+.+.|-
T Consensus 308 S~Q~i-Rtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 308 SKQCI-RTLQTSKGPVTNLQINPL 330 (476)
T ss_pred hHHHH-HHHhhhccccceeEeecc
Confidence 87554 666667889999998653
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=8.3e-22 Score=169.73 Aligned_cols=227 Identities=17% Similarity=0.258 Sum_probs=164.8
Q ss_pred cccCCcceEEEEEcCCC--CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 28 ELQDVDIVSAIEFDKTG--DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
.+.|.+.|+.+.-++-| .+.|+=+..|.|.||++...........+. ......+++.++.+|.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~-------~~~s~~~Pl~t~~ghk-------- 211 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLE-------VKDSEFRPLFTFNGHK-------- 211 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcccc-------ccccccCceEEecccC--------
Confidence 45678888888888865 455666788999999986432211111110 1123566778888888
Q ss_pred cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..=+.|+|+|... ..|++|..-+.|++|...++..+.
T Consensus 212 ----~EGy~LdWSp~~~-g~LlsGDc~~~I~lw~~~~g~W~v-------------------------------------- 248 (440)
T KOG0302|consen 212 ----GEGYGLDWSPIKT-GRLLSGDCVKGIHLWEPSTGSWKV-------------------------------------- 248 (440)
T ss_pred ----ccceeeecccccc-cccccCccccceEeeeeccCceee--------------------------------------
Confidence 6689999976433 457888888899999998876332
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
+. + -+.+|...|-.++|+|.. ..|++| .||+|+|||++...+...+. .+.|.
T Consensus 249 ------------d~-------~-Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~------~kAh~ 302 (440)
T KOG0302|consen 249 ------------DQ-------R-PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS------TKAHN 302 (440)
T ss_pred ------------cC-------c-cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE------eeccC
Confidence 10 0 026899999999999954 466777 99999999999554433332 47899
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC--EEEEE
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSR 341 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~ 341 (497)
+.|..+.|+... .+||+|+.||.++|||+|+-+.- .+...|.-|..+|+++.|+|... +.++|
T Consensus 303 sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~--------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 303 SDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG--------------QPVATFKYHKAPITSIEWHPHEDSVIAASG 367 (440)
T ss_pred CceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC--------------CcceeEEeccCCeeEEEeccccCceEEecc
Confidence 999999999998 69999999999999999975432 12223555789999999999543 34445
Q ss_pred ecCeEEEEecCC
Q 010933 342 DYMNLKLWDIRM 353 (497)
Q Consensus 342 ~~~~i~lwd~~~ 353 (497)
.|..|.+||+..
T Consensus 368 ~D~QitiWDlsv 379 (440)
T KOG0302|consen 368 EDNQITIWDLSV 379 (440)
T ss_pred CCCcEEEEEeec
Confidence 779999999864
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.4e-23 Score=194.78 Aligned_cols=235 Identities=17% Similarity=0.298 Sum_probs=196.0
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|...|.|+..-..++.+++|+.|-.+-+|..... ..+..|.+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-----------------------~~i~S~~~he----------- 70 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-----------------------NAITSLTGHE----------- 70 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCC-----------------------chhheeeccC-----------
Confidence 458899999999778999999999999999998654 3356689999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.+|.++.| +++..+|++|+.+|+|++||++..+..+
T Consensus 71 -spIeSl~f--~~~E~LlaagsasgtiK~wDleeAk~vr----------------------------------------- 106 (825)
T KOG0267|consen 71 -SPIESLTF--DTSERLLAAGSASGTIKVWDLEEAKIVR----------------------------------------- 106 (825)
T ss_pred -Ccceeeec--CcchhhhcccccCCceeeeehhhhhhhh-----------------------------------------
Confidence 99999999 6777899999999999999999776333
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
+ +.+|...+.++.|+|-+.+.+.| .|+.+++||++ ...+..+ +.+|...+.
T Consensus 107 -------------------t-Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~-------~~s~~~vv~ 158 (825)
T KOG0267|consen 107 -------------------T-LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-KKGCSHT-------YKSHTRVVD 158 (825)
T ss_pred -------------------h-hhccccCcceeeeccceEEeccccccccceehhhh-ccCceee-------ecCCcceeE
Confidence 2 27999999999999999999999 99999999999 4456655 677999999
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i 346 (497)
.+.|+|+| .+++.+++|..+++||+..|++. +.|+. |.+.+..+.|+|..-+++.|+ |+.+
T Consensus 159 ~l~lsP~G-r~v~~g~ed~tvki~d~~agk~~----~ef~~-------------~e~~v~sle~hp~e~Lla~Gs~d~tv 220 (825)
T KOG0267|consen 159 VLRLSPDG-RWVASGGEDNTVKIWDLTAGKLS----KEFKS-------------HEGKVQSLEFHPLEVLLAPGSSDRTV 220 (825)
T ss_pred EEeecCCC-ceeeccCCcceeeeecccccccc----ccccc-------------ccccccccccCchhhhhccCCCCcee
Confidence 99999999 99999999999999999998765 44444 568899999999888888874 6999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 403 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 403 (497)
++||+++ ...+...+..... +.+.+|+|+++.+++|..+..
T Consensus 221 ~f~dlet-fe~I~s~~~~~~~---------------v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 221 RFWDLET-FEVISSGKPETDG---------------VRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeeccce-eEEeeccCCccCC---------------ceeeeecCCceeeecCchhhh
Confidence 9999986 5555555444333 368999999999988887543
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.8e-20 Score=173.29 Aligned_cols=263 Identities=13% Similarity=0.146 Sum_probs=175.2
Q ss_pred CcceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
...+.+++|+|+|+.+ ++++.++.|++||..+++. ...+..+.
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------- 73 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----------------------IGTLPSGP------------- 73 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----------------------EEeccCCC-------------
Confidence 3456789999999976 5677889999999987643 33333332
Q ss_pred ceeEEEEEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 111 KINRVRWCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+..++| +++++.++++ +.|+.+++||+.+++....
T Consensus 74 ~~~~~~~--~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~----------------------------------------- 110 (300)
T TIGR03866 74 DPELFAL--HPNGKILYIANEDDNLVTVIDIETRKVLAE----------------------------------------- 110 (300)
T ss_pred CccEEEE--CCCCCEEEEEcCCCCeEEEEECCCCeEEeE-----------------------------------------
Confidence 2456788 6788877655 5689999999986543211
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC-CeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
+ .+...+.+++|+|+|+.++++ .+ ..+.+||.. ........ . ....+.
T Consensus 111 -------------------~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-~~~~~~~~------~--~~~~~~ 160 (300)
T TIGR03866 111 -------------------I--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK-TYEIVDNV------L--VDQRPR 160 (300)
T ss_pred -------------------e--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC-CCeEEEEE------E--cCCCcc
Confidence 1 112245679999999999988 55 457778987 34433321 1 123457
Q ss_pred EEEEeCCCCcEEE-EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE--ecC
Q 010933 268 SAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DYM 344 (497)
Q Consensus 268 ~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~ 344 (497)
.++|+|++ ..|+ ++..++.|++||+++++.. +.+..+.... .........++|+|++++++++ .++
T Consensus 161 ~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~------~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 161 FAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGV------HPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeeccccc------ccccCCccceEECCCCCEEEEEcCCCC
Confidence 79999999 7665 4456999999999987644 2222100000 0001124568899999986554 347
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcceEEEeccC
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEAGK 423 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~ 423 (497)
.+.+||+++ ++.+..+.... .+ .+++|+|+|++|+++ +.+|.|++||+.+++.+ ..++...
T Consensus 230 ~i~v~d~~~-~~~~~~~~~~~-~~---------------~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~-~~~~~~~ 291 (300)
T TIGR03866 230 RVAVVDAKT-YEVLDYLLVGQ-RV---------------WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI-KSIKVGR 291 (300)
T ss_pred eEEEEECCC-CcEEEEEEeCC-Cc---------------ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEEEccc
Confidence 899999986 66655543222 21 589999999999886 46899999999987544 5666543
Q ss_pred cceeeeEeec
Q 010933 424 NENRKPILQA 433 (497)
Q Consensus 424 ~~v~~~~~~~ 433 (497)
..+.++++|
T Consensus 292 -~~~~~~~~~ 300 (300)
T TIGR03866 292 -LPWGVVVRP 300 (300)
T ss_pred -ccceeEeCC
Confidence 336776653
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.8e-21 Score=162.20 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=153.2
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+-|.++.| +.-|+.+++|+.|++++|||.+...-..
T Consensus 14 DlihdVs~--D~~GRRmAtCSsDq~vkI~d~~~~s~~W------------------------------------------ 49 (361)
T KOG2445|consen 14 DLIHDVSF--DFYGRRMATCSSDQTVKIWDSTSDSGTW------------------------------------------ 49 (361)
T ss_pred ceeeeeee--cccCceeeeccCCCcEEEEeccCCCCce------------------------------------------
Confidence 77999999 7889999999999999999975433111
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCc-eeeEEeecCCCccCCCCCC
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (497)
.+... .+.|.+.|..+.|.+ -|+.++++ .|+++.||.-.... +....-..+..++......
T Consensus 50 --------------~~Ts~-Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrss 114 (361)
T KOG2445|consen 50 --------------SCTSS-WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSS 114 (361)
T ss_pred --------------EEeee-EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcc
Confidence 12222 278999999999954 68899999 99999999763111 1100000111235667789
Q ss_pred eEEEEEeCCC-CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC---CCEEEEE
Q 010933 266 ITSAEFHPIY-CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSR 341 (497)
Q Consensus 266 i~~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~~ 341 (497)
|+.+.|.|.. .-.||+++.||.+|||+...--.+ +.+....+-..-......+..+..|+.|+|. ..+||.|
T Consensus 115 V~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 115 VTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred eeEEEecchhcceEEEEeccCcEEEEEecCCcccc----ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEE
Confidence 9999999973 167999999999999998653222 1221111100000011234467889999974 3678888
Q ss_pred ecC------eEEEEecCCCC-c--eeeeeeecccccccccccCCCCCccceeEEEEcCC----CCEEEEEeCCCcEEEEE
Q 010933 342 DYM------NLKLWDIRMDS-T--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD----GLHFATGSYSNLLRIFS 408 (497)
Q Consensus 342 ~~~------~i~lwd~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~s~~~dg~i~vw~ 408 (497)
.+. .++||.....+ + .+.++.+|..++ ++++|.|+ -..||+++.|| |+||+
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI---------------~di~wAPn~Gr~y~~lAvA~kDg-v~I~~ 254 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI---------------RDISWAPNIGRSYHLLAVATKDG-VRIFK 254 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcc---------------eeeeeccccCCceeeEEEeecCc-EEEEE
Confidence 654 89999876544 2 344566676654 79999996 35799999999 99999
Q ss_pred cCCC
Q 010933 409 HGVG 412 (497)
Q Consensus 409 ~~~~ 412 (497)
+...
T Consensus 255 v~~~ 258 (361)
T KOG2445|consen 255 VKVA 258 (361)
T ss_pred Eeec
Confidence 9853
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=4.2e-21 Score=167.05 Aligned_cols=228 Identities=18% Similarity=0.328 Sum_probs=160.5
Q ss_pred CcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 32 VDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 32 ~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
..+|..+.|.++.. .||||+.|..|+||.+..+... ...+..+++..|..|+ .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~--------------~~~~~V~y~s~Ls~H~------------~ 66 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG--------------GGDMKVEYLSSLSRHT------------R 66 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC--------------CCceeEEEeecccCCc------------c
Confidence 36899999999776 9999999999999998765420 0013556788888999 8
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
+|+.++| +|+|..|++|+.+|.|.+|....-... ...... +.
T Consensus 67 aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~---------------------------------~~ 108 (434)
T KOG1009|consen 67 AVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DADTEA---------------------------------DL 108 (434)
T ss_pred eeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cccchh---------------------------------hh
Confidence 9999999 789999999999999999987641110 000000 00
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.-..| .++....+|...|..++|+|++..++++ -|..+++||+. .++...+ +.+|...+..+
T Consensus 109 ~ke~w---------~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~-------~~dh~~yvqgv 171 (434)
T KOG1009|consen 109 NKEKW---------VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAI-------LDDHEHYVQGV 171 (434)
T ss_pred Cccce---------EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEee-------cccccccccee
Confidence 00011 2222237899999999999999999999 99999999999 6777766 78999999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCccccccc-ceeccccccc--CCc-cccc--cccccccEEEEeeCCCEEEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESH--GSK-SFFT--EIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~~~~~~--~~~-~~~~--~~~~~i~~~~~s~~g~~l~~~ 341 (497)
+|+|.+ .++++-+.|...+.+.+...+...... ..+....... ... ..|. ....-...++|+|+|.++++.
T Consensus 172 awDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 172 AWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred ecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 999999 999999999988888877654332111 0111100000 000 0010 112235678999999999873
No 149
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5e-21 Score=160.97 Aligned_cols=246 Identities=18% Similarity=0.200 Sum_probs=183.7
Q ss_pred CCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 104 (497)
Q Consensus 25 ~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 104 (497)
....+.|..++.+++|.++ ..+++|+.||.|+.+|+.+++. ..+..|.
T Consensus 47 l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~------------------------~~igth~------- 94 (323)
T KOG1036|consen 47 LKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE------------------------DQIGTHD------- 94 (323)
T ss_pred hhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc------------------------eeeccCC-------
Confidence 3445679999999999985 4688999999999999998753 4467788
Q ss_pred ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
.+|.+|.++ +....+++||.|++|++||.+.......
T Consensus 95 -----~~i~ci~~~--~~~~~vIsgsWD~~ik~wD~R~~~~~~~------------------------------------ 131 (323)
T KOG1036|consen 95 -----EGIRCIEYS--YEVGCVISGSWDKTIKFWDPRNKVVVGT------------------------------------ 131 (323)
T ss_pred -----CceEEEEee--ccCCeEEEcccCccEEEEeccccccccc------------------------------------
Confidence 999999995 5666899999999999999986321110
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
......|.++..+ |+.|+.| .+..+.+||++......+. .-...+
T Consensus 132 --------------------------~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~------reS~lk 177 (323)
T KOG1036|consen 132 --------------------------FDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR------RESSLK 177 (323)
T ss_pred --------------------------cccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh------ccccce
Confidence 1223377777765 5678887 9999999999965554432 122345
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D 342 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~ 342 (497)
-.++++++-|++ .=+++++.||+|.+=.+...+......-.|..|....... ...-+|++|+|+|-...|++| +
T Consensus 178 yqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----~~~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 178 YQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----EIIYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred eEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc----eEEEEeceeEeccccceEEecCC
Confidence 678999999977 6789999999999877766533333334555554332221 112479999999998889997 6
Q ss_pred cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933 343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 400 (497)
Q Consensus 343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 400 (497)
||.|.+||+.+ .+.+..+...+..+ -+++|+.||..||.++.
T Consensus 253 DG~V~~Wd~~~-rKrl~q~~~~~~SI---------------~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DGIVNIWDLFN-RKRLKQLAKYETSI---------------SSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEccCcc-hhhhhhccCCCCce---------------EEEEeccCCCeEEEEec
Confidence 79999999986 77777776664433 48999999999999885
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.2e-21 Score=171.06 Aligned_cols=262 Identities=14% Similarity=0.129 Sum_probs=191.0
Q ss_pred cceeEEEEEecCCCCEEEE--EeCCccEEEeecCch--heeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 110 EKINRVRWCAAPNGSMFIL--STNDKTIKLWKVRDQ--KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s--~s~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..+.++.|. ... .|++ .+.|..+++|.-... ++..+.+... +. ..+........++..++
T Consensus 35 pg~~s~~w~--~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g------------d~-~~Cv~~~s~S~y~~sgG 98 (673)
T KOG4378|consen 35 PGDFSFNWQ--RRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG------------DN-AFCVACASQSLYEISGG 98 (673)
T ss_pred Ccceeeecc--ccc-eEEEeecCCceeEEEecccCCCCccceeecccc------------ch-HHHHhhhhcceeeeccC
Confidence 569999994 332 2444 468999999976543 1111111111 11 11111122235555666
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC-CC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LT 263 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 263 (497)
. ++.+++||+... .+..++++|...|+++.++-...+|+++ ..|.|.|..+.+ +..... +.. ..
T Consensus 99 ~--~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~-------f~~~sg 164 (673)
T KOG4378|consen 99 Q--SGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTT-------FTIDSG 164 (673)
T ss_pred c--CceeeehhhHHH----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-Cccccc-------eecCCC
Confidence 5 789999999842 3344458999999999999999999999 899999999884 333322 332 24
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE--E
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS--R 341 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~ 341 (497)
..++-+.|+|....+|.+++.+|.|.+||+...... ..+ ...|..+...++|+|..+.|++ |
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~------------~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHA------------SEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cch------------hhhccCCcCcceecCCccceEEEec
Confidence 566799999998678889999999999999875433 111 2357789999999998766555 4
Q ss_pred ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEec
Q 010933 342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 421 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 421 (497)
-|..|.+||.+. .+....+...... ..++|+++|.+|+.|...|.|..||++..+....++.+
T Consensus 229 ~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 229 YDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred ccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 569999999985 6666666554433 58999999999999999999999999988788899999
Q ss_pred cCcceeeeEeecC
Q 010933 422 GKNENRKPILQAA 434 (497)
Q Consensus 422 ~~~~v~~~~~~~~ 434 (497)
|...|.+++|.+.
T Consensus 292 h~~sVt~vafq~s 304 (673)
T KOG4378|consen 292 HDASVTRVAFQPS 304 (673)
T ss_pred cccceeEEEeeec
Confidence 9999999999986
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=5.3e-21 Score=161.96 Aligned_cols=282 Identities=16% Similarity=0.229 Sum_probs=188.6
Q ss_pred cCCcceEEEEEcC-----CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc--ccCccccc
Q 010933 30 QDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDY 102 (497)
Q Consensus 30 ~h~~~I~~i~~sp-----~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~ 102 (497)
.|..+|..++|++ +-+.+|+.+. ..+.||+...... ...+.... .|+
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~--------------------ir~lq~y~D~d~~----- 89 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG--------------------IRLLQSYADEDHD----- 89 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc--------------------eeeeeeccCCCCC-----
Confidence 4788999999995 3356777765 4799998765321 12222222 233
Q ss_pred ccccccccceeEEEEEecCC--CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccc
Q 010933 103 LKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 180 (497)
Q Consensus 103 ~~~~~~~~~i~~l~~~~s~~--~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (497)
+..+.++|+...+ +.++++++.-|.|+|.|+.++++..
T Consensus 90 -------Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~--------------------------------- 129 (385)
T KOG1034|consen 90 -------ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK--------------------------------- 129 (385)
T ss_pred -------cceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---------------------------------
Confidence 7788899975332 5688888999999999998877433
Q ss_pred ccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCc
Q 010933 181 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 258 (497)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 258 (497)
.+ .+|...|+.+.+.|+. ++++++ .|..|++|+++ ...++.++ ..
T Consensus 130 ---------------------------~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~Vf----GG 176 (385)
T KOG1034|consen 130 ---------------------------NY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVF----GG 176 (385)
T ss_pred ---------------------------ce-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEe----cc
Confidence 22 7999999999999965 566778 99999999999 67777764 45
Q ss_pred cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce-----------ecccccccCCcccccccccccc
Q 010933 259 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI-----------LRDAAESHGSKSFFTEIIASIS 327 (497)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~ 327 (497)
+++|.+.|.++.|+++| .+|++++.|..|++|++...+........ |.........+.+-+-|...|-
T Consensus 177 ~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred cccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 78999999999999999 89999999999999999864432111111 1110011111223456888888
Q ss_pred EEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeeccccccccccc-CCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933 328 DIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 328 ~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 405 (497)
|+.|- |.++++- .++.|..|....-.+.+...+..+.....+-.. +..-.+. -..++|.|-++.||.|...|.|+
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW-firf~~d~~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW-FIRFAFDPWQKMLALGNQSGKVY 332 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE-EEEEeecHHHHHHhhccCCCcEE
Confidence 88886 5788874 458999998721121111111111100000000 0000111 13567778899999999999999
Q ss_pred EEEcCCCCc
Q 010933 406 IFSHGVGSA 414 (497)
Q Consensus 406 vw~~~~~~~ 414 (497)
+||++..+.
T Consensus 333 vwdL~~~ep 341 (385)
T KOG1034|consen 333 VWDLDNNEP 341 (385)
T ss_pred EEECCCCCC
Confidence 999998744
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=6.1e-21 Score=161.27 Aligned_cols=293 Identities=15% Similarity=0.195 Sum_probs=210.1
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
...+.| +|||..|++-+.|..+++|++.......-......
T Consensus 52 ~kgckW--SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~------------------------------------- 92 (406)
T KOG2919|consen 52 LKGCKW--SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN------------------------------------- 92 (406)
T ss_pred hcccee--CCCCceEEeecccCeeeEEecChhhcccCCCCccc-------------------------------------
Confidence 456789 79999999999999999999864321110000000
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeC-------CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNN-------SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-------~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
.+....+.......|...+|- |+..+++++ .+.-|++||.-+ ++....+ ..-.|.
T Consensus 93 -----------~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaft-G~lraSy-----~~ydh~ 155 (406)
T KOG2919|consen 93 -----------FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFT-GKLRASY-----RAYDHQ 155 (406)
T ss_pred -----------cccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccc-cccccch-----hhhhhH
Confidence 000000001223345555553 677788888 999999999984 4333221 111232
Q ss_pred ---CCeEEEEEeCCCCcEEEEEeCCCeEEEEEc-cCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEE
Q 010933 264 ---EVITSAEFHPIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHL 338 (497)
Q Consensus 264 ---~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l 338 (497)
....+++|+||| ..|++ +..+.|++||+ |.|+.+........+ . .+..+-+.+++|+|-. +.+
T Consensus 156 de~taAhsL~Fs~DG-eqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~-k---------~gq~giisc~a~sP~~~~~~ 223 (406)
T KOG2919|consen 156 DEYTAAHSLQFSPDG-EQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKG-K---------FGQKGIISCFAFSPMDSKTL 223 (406)
T ss_pred HhhhhheeEEecCCC-CeEee-cccceEEEeeccCCCCCCcchhhhhcc-c---------ccccceeeeeeccCCCCcce
Confidence 234789999999 77664 56778999999 777665322222221 0 1224678999999955 588
Q ss_pred EEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCcce
Q 010933 339 LSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGG 416 (497)
Q Consensus 339 ~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~~~~ 416 (497)
++|+. ..+-||.-.. ..++..+-+|.+.+ +.+.|.++|+.|++|.. |-.|..||++......
T Consensus 224 a~gsY~q~~giy~~~~-~~pl~llggh~gGv---------------ThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 224 AVGSYGQRVGIYNDDG-RRPLQLLGGHGGGV---------------THLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred eeecccceeeeEecCC-CCceeeecccCCCe---------------eeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 88887 7777777664 78899999999876 79999999999999987 7899999999887777
Q ss_pred EEEeccCc-ceeeeEeecCCCcccccccceeEeeccCc-eecC---CCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933 417 ITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS---SSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 491 (497)
Q Consensus 417 ~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~---~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~ 491 (497)
..|..|.. ....+.|-.+.++++ |++|+.||. ++|. .+........++..++.++++|--+++|+++...
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~-----LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEI-----LASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred hhhhhhccCccceEEEecCCCCce-----eeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 88999988 778888888878888 999999999 9993 3444556777889999999999999999988665
Q ss_pred eE
Q 010933 492 LF 493 (497)
Q Consensus 492 ~~ 493 (497)
+|
T Consensus 363 ~f 364 (406)
T KOG2919|consen 363 IF 364 (406)
T ss_pred ee
Confidence 54
No 153
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.1e-21 Score=165.68 Aligned_cols=313 Identities=11% Similarity=0.032 Sum_probs=214.8
Q ss_pred CcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 27 EELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 27 ~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
...+|.+.|+++.||.+|++||+|+.|..+++|+++..-. ++ ..+++. +.+|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---~k--------------~~KPI~-~~~~~--------- 103 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---RK--------------TPKPIG-VMEHP--------- 103 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh---hc--------------CCCCce-eccCc---------
Confidence 4557999999999999999999999999999999864211 00 001122 22322
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
|...|.+++| +..+.++++|+.+++|.+.|+++.+.+.+...
T Consensus 104 -H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~----------------------------------- 145 (609)
T KOG4227|consen 104 -HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE----------------------------------- 145 (609)
T ss_pred -cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc-----------------------------------
Confidence 1278999999 67788999999999999999998774432110
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
....+.|+.+..+|..+.|++. .++.|.+||.+........+. +......
T Consensus 146 ------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-----~AN~~~~ 196 (609)
T KOG4227|consen 146 ------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-----PANSGKN 196 (609)
T ss_pred ------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-----ecCCCcc
Confidence 2334589999999988888888 999999999984443333321 2334567
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-C
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 344 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~ 344 (497)
.+.+-|+|..+.+|++.+..+-+.+||.+..+... ....+ ...+.........+.|+|+|..+++-.- .
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~---~~~~~-------~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPV---YQRSM-------FKGLPQENTEWMGSLWSPSGNQFMSIRRGK 266 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccchH---Hhhhc-------cccCcccchhhhheeeCCCCCeehhhhccC
Confidence 78999999998999999999999999998754211 00000 0001111234578899999998887543 5
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC----------C-
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG----------S- 413 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~----------~- 413 (497)
.-.+||+....-++..+......-. .+..+.+++|..|.. +++|+.+-.|++|.+... .
T Consensus 267 ~P~~~D~~S~R~~V~k~D~N~~GY~---------N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~ 336 (609)
T KOG4227|consen 267 CPLYFDFISQRCFVLKSDHNPNGYC---------NIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHD 336 (609)
T ss_pred CCEEeeeecccceeEeccCCCCcce---------eeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcc
Confidence 5667888752233333332221111 111224788876654 999999999999997541 1
Q ss_pred -----------cceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCC
Q 010933 414 -----------AGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSG 460 (497)
Q Consensus 414 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~ 460 (497)
.....|++|..-++.+.|++- ..+ +++.+-... ++|....
T Consensus 337 ~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H--~~~-----l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 337 EEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH--NNL-----LVSSGVENSFKLWSDHR 388 (609)
T ss_pred hhhCchhheecceeEEEecccccccceeecCC--cce-----Eeccchhhheecccccc
Confidence 124578999999999999983 334 777777777 9995443
No 154
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.6e-21 Score=163.23 Aligned_cols=288 Identities=19% Similarity=0.226 Sum_probs=193.3
Q ss_pred CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCC
Q 010933 45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 124 (497)
Q Consensus 45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~ 124 (497)
+.+|++...|.|+|||..+++. +..|++|. ..++.++|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~-----------------------l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL-----------------------LEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh-----------------------hheecCCC------------CcccceEEecCCCCC
Confidence 5689999999999999988744 78889998 889999997422456
Q ss_pred EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccce
Q 010933 125 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR 204 (497)
Q Consensus 125 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (497)
.+.+|+.||+|++||++........
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~------------------------------------------------------- 110 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARI------------------------------------------------------- 110 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhhe-------------------------------------------------------
Confidence 7889999999999999876533211
Q ss_pred eeeeeccCCC-CCeeEEEeCCCCCEEEEE-----cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcE
Q 010933 205 CQKVYPHAHD-FNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNL 278 (497)
Q Consensus 205 ~~~~~~~~h~-~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 278 (497)
. +.+++ .+..+++.+-.++.+++| .+-.+.+||++...+.+..+ .+.|.+.|+++.|+|..+++
T Consensus 111 ---~-~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~------~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 111 ---S-WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL------NESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred ---e-ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh------hhhccCcceeEEecCCCCCe
Confidence 1 13443 456677777777888875 36789999999666645433 67899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEE-ecCeEEEEecCCCCc
Q 010933 279 LAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DYMNLKLWDIRMDST 356 (497)
Q Consensus 279 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~i~lwd~~~~~~ 356 (497)
|++||.||.|.+||+.....-.....++.. ...|.++.|..++ +.|.+- .++...+|+++. +.
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~--------------~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~-~~ 245 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEEDALLHVINH--------------GSSIHLIGWLSKKYKRIMCLTHMETFAIYELED-GS 245 (376)
T ss_pred EEeecccceEEeeecCCCcchhhHHHhhcc--------------cceeeeeeeecCCcceEEEEEccCceeEEEccC-CC
Confidence 999999999999999875443333334333 4679999999887 335554 459999999986 55
Q ss_pred eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcC---CCC--cceEEEec-cCcceeee
Q 010933 357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG---VGS--AGGITVEA-GKNENRKP 429 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~---~~~--~~~~~~~~-~~~~v~~~ 429 (497)
+...+....-.....-.....+.+ .......+....+.++. -|...++-+. ++. .....+.+ |..-|+.+
T Consensus 246 ~~~~~~~~~~~~~d~r~~~~~dY~---I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i 322 (376)
T KOG1188|consen 246 EETWLENPDVSADDLRKEDNCDYV---INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI 322 (376)
T ss_pred hhhcccCccchhhhHHhhhhhhhe---eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence 544443221110000000000000 11111224445554444 5555555443 221 22356666 66677777
Q ss_pred EeecCCCcccccccceeEeeccCc-eecC
Q 010933 430 ILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
.|-. ..- .+.+||+||. .+|.
T Consensus 323 ~~~~--~~~-----~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 323 LFDV--KND-----VLYTGGEDGLLQAWK 344 (376)
T ss_pred hhhc--ccc-----eeeccCCCceEEEEe
Confidence 7764 333 3899999999 9994
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=2.3e-20 Score=172.07 Aligned_cols=273 Identities=14% Similarity=0.179 Sum_probs=202.9
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
.|..++|-|||..|+.+.. ..+.|||...|.+ +.++++|. +.|+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~l-----------------------lqtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTL-----------------------LQPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccc-----------------------cccccccc------------ceEE
Confidence 8999999999998877654 4799999998854 88999999 8999
Q ss_pred EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933 114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 193 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (497)
+++| +.||+.|++|+.|..|.+|...-.-.. ...+...+-.+.++|-...++++++ +..-
T Consensus 58 cVAy--s~dGkrFASG~aDK~VI~W~~klEG~L---------------kYSH~D~IQCMsFNP~~h~LasCsL---sdFg 117 (1081)
T KOG1538|consen 58 CVAY--AKDGKRFASGSADKSVIIWTSKLEGIL---------------KYSHNDAIQCMSFNPITHQLASCSL---SDFG 117 (1081)
T ss_pred EEEE--ccCCceeccCCCceeEEEeccccccee---------------eeccCCeeeEeecCchHHHhhhcch---hhcc
Confidence 9999 789999999999999999976432211 1223344555556666666666653 3345
Q ss_pred EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe
Q 010933 194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH 272 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 272 (497)
+|..+.. .+.. ......+.+.+|+.||++++.| .+|+|.+-+-. +.....+ ....+..++|.+++|+
T Consensus 118 lWS~~qK----~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I-----~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 118 LWSPEQK----SVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKI-----ERPGGSNSPIWSICWN 185 (1081)
T ss_pred ccChhhh----hHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEE-----eCCCCCCCCceEEEec
Confidence 6665532 1111 2335678899999999999999 99999998765 4443333 1245678999999999
Q ss_pred CCC----CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEE
Q 010933 273 PIY----CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLK 347 (497)
Q Consensus 273 ~~~----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~ 347 (497)
|.. ...+++.....++.+|.+... .+.+. +.+. -...|+.+.++|+|++.| +++.+.
T Consensus 186 p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~-r~L~----------------FdP~CisYf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 186 PSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKD-RALN----------------FDPCCISYFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred CCCCCCccceEEEEeccceeEEEEecce-eeccc-ccCC----------------CCchhheeccCCcEEEEccCCCceE
Confidence 874 146888888889999888642 22111 1111 235789999999999887 679999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
+|--+ +..+.+......++ +.++..|++++++.|+.||+|..|++
T Consensus 248 ~fTR~--GvrLGTvg~~D~WI---------------WtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 248 LFTRD--GVRLGTVGEQDSWI---------------WTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEeec--CeEEeeccccceeE---------------EEEEEccCCceEEEEEccCeeehhhh
Confidence 99764 77777776666654 89999999999999999999999886
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.8e-22 Score=195.04 Aligned_cols=250 Identities=16% Similarity=0.166 Sum_probs=187.5
Q ss_pred ccceeEEEEEecCCC--CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 109 EEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~--~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
+.+-+.++|.+..++ ..|+.|..||.|.+||...-. ...
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~-~~~-------------------------------------- 104 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII-ANA-------------------------------------- 104 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhc-cCc--------------------------------------
Confidence 377899999643322 257888899999999986521 000
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
..+.+.++ ..|.+.|..+.|++... +|++| .||.|.|||+......... .-....+
T Consensus 105 ---------------~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~ 162 (1049)
T KOG0307|consen 105 ---------------SEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPS 162 (1049)
T ss_pred ---------------chHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcc
Confidence 00122222 78999999999999555 88999 9999999999854433321 0123457
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE--
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR-- 341 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~-- 341 (497)
.|.+++|+..-.+.|++++.+|++.|||+|..+.+. .+..+. ....+..+.|+|+.. .|+++
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii----~ls~~~-----------~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII----KLSDTP-----------GRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCccc----ccccCC-----------CccceeeeeeCCCCceeeeeecC
Confidence 899999998765789999999999999999876442 222211 013477899999873 34443
Q ss_pred ec--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcceEE
Q 010933 342 DY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGIT 418 (497)
Q Consensus 342 ~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~ 418 (497)
+| -.|.+||++....+++.+.+|...+ .++.|++.+ .+|++++.|++|.+|+.++++. ...
T Consensus 228 dd~~PviqlWDlR~assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-l~~ 291 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-LGE 291 (1049)
T ss_pred CCCCceeEeecccccCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCceE-eee
Confidence 34 6899999998788999999999865 799999965 8999999999999999999854 488
Q ss_pred EeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
+....+.+..+.|.|...+. ++..+.+|. .|+
T Consensus 292 ~p~~~nW~fdv~w~pr~P~~------~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQWCPRNPSV------MAAASFDGKISIY 324 (1049)
T ss_pred cCCCCcceeeeeecCCCcch------hhhheeccceeee
Confidence 88888999999999964433 688999998 888
No 157
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=2.1e-21 Score=173.16 Aligned_cols=255 Identities=18% Similarity=0.291 Sum_probs=198.4
Q ss_pred cchhhhhcCCCCCCCcc---cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933 13 EWKCSQAFGERNPDEEL---QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY 89 (497)
Q Consensus 13 ~~~~~~~~~~~~~~~~~---~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (497)
.|.+++- +.+.+...+ ....-|.++.+.|||+.|++|++-.++.|||+..... +.
T Consensus 444 VWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp---------------------ri 501 (705)
T KOG0639|consen 444 VWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---------------------RI 501 (705)
T ss_pred EeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc---------------------ch
Confidence 5887775 444444333 3467899999999999999999999999999987543 33
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 169 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (497)
..++.... ...++++. +||.+..+++..||.|.|||+.+..+.+
T Consensus 502 kaeltssa------------paCyALa~--spDakvcFsccsdGnI~vwDLhnq~~Vr---------------------- 545 (705)
T KOG0639|consen 502 KAELTSSA------------PACYALAI--SPDAKVCFSCCSDGNIAVWDLHNQTLVR---------------------- 545 (705)
T ss_pred hhhcCCcc------------hhhhhhhc--CCccceeeeeccCCcEEEEEcccceeee----------------------
Confidence 33444433 44677888 7899999999999999999998765332
Q ss_pred cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCcee
Q 010933 170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 248 (497)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 248 (497)
. +.+|++.+.|+.++++|..|-+| -|.+|+.||++...+.
T Consensus 546 --------------------------------------q-fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 546 --------------------------------------Q-FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred --------------------------------------c-ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence 2 38999999999999999999999 9999999999944443
Q ss_pred eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933 249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 328 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (497)
.+ ......|.++..+|++ .++++|-.++.+-|......+. + .+..|..-|.+
T Consensus 587 qq---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-------y-----------qlhlheScVLS 638 (705)
T KOG0639|consen 587 QQ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-------Y-----------QLHLHESCVLS 638 (705)
T ss_pred hh---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-------e-----------eecccccEEEE
Confidence 32 1345789999999999 9999999999988877664321 1 12335678999
Q ss_pred EEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933 329 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 407 (497)
Q Consensus 329 ~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw 407 (497)
+.|.+-|+++++. -|+-+..|...- +..+...+.... |+++.+|.|.++|+||+.|....||
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~Ss----------------VlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSS----------------VLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred EEecccCceeeecCchhhhhhccCcc-ccceeeccccCc----------------ceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999985 569999999876 655555443332 2689999999999999999999998
Q ss_pred Ec
Q 010933 408 SH 409 (497)
Q Consensus 408 ~~ 409 (497)
.+
T Consensus 702 eV 703 (705)
T KOG0639|consen 702 EV 703 (705)
T ss_pred EE
Confidence 76
No 158
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=5.3e-20 Score=153.40 Aligned_cols=208 Identities=16% Similarity=0.219 Sum_probs=156.4
Q ss_pred cCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccC-ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCe
Q 010933 211 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 287 (497)
Q Consensus 211 ~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 287 (497)
..+..++++..|+. +.++|.++ -|-+..|||++++ ...+++ .+-.|...|+.++|...+..+||+.+.||.
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeEEEeccCccceEEEecCCCc
Confidence 45677999999987 67788888 9999999999953 111222 267899999999999987789999999999
Q ss_pred EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEE-Eec-CeEEEEecCCCCceeeeeeec
Q 010933 288 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS-RDY-MNLKLWDIRMDSTPVATFKIH 364 (497)
Q Consensus 288 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~-~~~-~~i~lwd~~~~~~~~~~~~~~ 364 (497)
+|+||+|..+.. .-+++. . ....+...++|++.. +++|+ +.+ ..|.+.|++....++.++++|
T Consensus 221 vRmFDLR~leHS---TIIYE~-p----------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H 286 (364)
T KOG0290|consen 221 VRMFDLRSLEHS---TIIYED-P----------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH 286 (364)
T ss_pred EEEEEecccccc---eEEecC-C----------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence 999999986532 122333 1 113578889998755 56666 345 899999999989999999999
Q ss_pred ccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccccccc
Q 010933 365 EHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLS 443 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 443 (497)
...+ ..++|.|. ...|+++|+|..+.+||+...-.. .-..|+
T Consensus 287 ~a~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dPi----------------- 329 (364)
T KOG0290|consen 287 QASV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDPI----------------- 329 (364)
T ss_pred cccc---------------cceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCch-----------------
Confidence 9976 68999995 578999999999999999865220 001111
Q ss_pred ceeEeeccCceecCCCCCcccccccCCCeEEEEEecC-CCEEEEEeCCceEEE
Q 010933 444 NLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPT-TNLIACANGNSLFFH 495 (497)
Q Consensus 444 ~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~-~~~la~~~~~~~~i~ 495 (497)
| .......|+.++|+|. .+.+|++..+.+.|.
T Consensus 330 -l-------------------ay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 330 -L-------------------AYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred -h-------------------hhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 1 1113448899999975 688999988877654
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.9e-21 Score=169.14 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=179.4
Q ss_pred EEEEEcC-------CCCEEEEeecCCeEEEEEecCCccc----cchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933 36 SAIEFDK-------TGDYLAVGDRGGRVILFETVGGKNH----ISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 104 (497)
Q Consensus 36 ~~i~~sp-------~g~~lasg~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 104 (497)
.|++|.. .|+|+|.|+.|..|-|||+.-...- .+....++. . ....+.-..-.+|+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~-~-----~k~~k~~~~~~gHT------- 243 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKK-K-----KKKGKRSNSASGHT------- 243 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhh-h-----hhhcccccccccch-------
Confidence 5666643 3789999999999999998643210 011000000 0 00000011123577
Q ss_pred ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
..|.+|.|.. .-...|++||.|.+|++||+.++++...
T Consensus 244 -----davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s------------------------------------ 281 (463)
T KOG0270|consen 244 -----DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSS------------------------------------ 281 (463)
T ss_pred -----HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCccee------------------------------------
Confidence 8899999952 3345788999999999999999885442
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
+ ..|...|.++.|+| ....|++| .|++|.+.|.+.....-.. -..
T Consensus 282 ------------------------~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--------wk~ 328 (463)
T KOG0270|consen 282 ------------------------I-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--------WKF 328 (463)
T ss_pred ------------------------h-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--------EEe
Confidence 2 67899999999988 56678888 9999999999843322221 124
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR 341 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~ 341 (497)
.+.|-.++|.|.....+++++.||+++-+|+|.... .+|.. ..|.++|.++++++.-. +++++
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~-----------~AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTL-----------KAHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEE-----------EeccCCcceEEecCCCCcceeec
Confidence 578899999999878889999999999999998642 23333 45788999999998655 45555
Q ss_pred -ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcc
Q 010933 342 -DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 342 -~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
+++.|++|++.. ..+ .....|......+ .++++.|+- -+|+.|+..+.++|||+.+...+
T Consensus 393 s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 393 STDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 569999999974 222 2222232222111 367777764 46778888889999999887555
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=7.1e-20 Score=168.18 Aligned_cols=268 Identities=15% Similarity=0.142 Sum_probs=176.6
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933 211 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 289 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 289 (497)
..|...|..+.|.|....|+++ .|.++++||+. +..+... ..+.+|...+.+++|.|..+..|++|+.||.|.
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEE
Confidence 6899999999999966677888 99999999999 4444332 126799999999999999988999999999999
Q ss_pred EEEccCCcccc--c-ccceecccccccCCc-------cccccccccccE---EEEeeCCCEEEEE--ecCeEEEEecCCC
Q 010933 290 LVDMRQSALCD--H-SARILRDAAESHGSK-------SFFTEIIASISD---IKFANDGQHLLSR--DYMNLKLWDIRMD 354 (497)
Q Consensus 290 v~d~~~~~~~~--~-~~~~~~~~~~~~~~~-------~~~~~~~~~i~~---~~~s~~g~~l~~~--~~~~i~lwd~~~~ 354 (497)
|||++-...-. . .......|...+.+. .....+...|.+ +.+..|...||++ .|+.|+|||++..
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 99998654110 0 012222223221111 122344445555 5566788888885 3799999999862
Q ss_pred CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-eEEEeccCccee--eeEe
Q 010933 355 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAGKNENR--KPIL 431 (497)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~v~--~~~~ 431 (497)
...... ....+ .--.+....-.++.++.....|.+|++.+.|++|++|++.+-..- ...+.++...-. .-..
T Consensus 251 -~~~~r~--ep~~~--~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l 325 (720)
T KOG0321|consen 251 -YTAYRQ--EPRGS--DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL 325 (720)
T ss_pred -cccccc--CCCcc--cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeec
Confidence 211111 00000 000011112223367778778899998888999999999874322 223333332211 2223
Q ss_pred ecCCCcccccccceeEeeccCc-eec---CCCCCcccccccCCCeEEEEEecC--CCEEEEEeCCceEEEe
Q 010933 432 QAAPRARRSSLSNLTRGLYRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPT--TNLIACANGNSLFFHY 496 (497)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~--~~~la~~~~~~~~i~~ 496 (497)
+| ++.+ +++|+.|.. ++| +.......+.+|...|+.++|.|. .+.+.+..+..+.||.
T Consensus 326 Sp--d~~~-----l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 326 SP--DDCS-----LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred CC--CCce-----EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 44 6777 999999999 999 444556678899999999999886 4555553356699996
No 161
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.9e-20 Score=174.38 Aligned_cols=272 Identities=13% Similarity=0.190 Sum_probs=206.1
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
.+-+.|+| .++|..+++++.||.|++|+.......
T Consensus 14 ~G~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~------------------------------------------- 48 (933)
T KOG1274|consen 14 GGLTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEE------------------------------------------- 48 (933)
T ss_pred CceEEEEE--cCCCCEEEEecCCCceEEeecCCcccC-------------------------------------------
Confidence 77889999 789999999999999999987654210
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+.. ...+...|.+++.. +..|++| .+++|.+|.+. ....-.+ +....-++++
T Consensus 49 ---------------P~t--i~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp-s~~~~~i-------L~Rftlp~r~ 101 (933)
T KOG1274|consen 49 ---------------PET--IDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP-SGEEDTI-------LARFTLPIRD 101 (933)
T ss_pred ---------------Cch--hhccCceeEEEeec--ccceEEeeccceEEEeeCC-CCCccce-------eeeeeccceE
Confidence 000 02255667666654 4478888 99999999988 3333222 4456788999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
++|+-+| +++|.|+.|-.|++-++...... +.+ .+|.++|.++.|+|++++||+.+ +|.|+
T Consensus 102 ~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~----~~l-------------rgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 102 LAVSGSG-KMIAAGSDDTAVKLLNLDDSSQE----KVL-------------RGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred EEEecCC-cEEEeecCceeEEEEeccccchh----eee-------------cccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 9999999 99999999999999998776433 344 44779999999999999999974 69999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe--ccCcc
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE--AGKNE 425 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~--~~~~~ 425 (497)
+||++. +.+..++.+-.... ......+. ..++|+|+|..++..+.|+.|++|+....+.. ..+. -+...
T Consensus 164 iw~~~~-~~~~~tl~~v~k~n-----~~~~s~i~--~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~-f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 164 IWDLQD-GILSKTLTGVDKDN-----EFILSRIC--TRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ-FKLRDKLSSSK 234 (933)
T ss_pred EEEccc-chhhhhcccCCccc-----ccccccee--eeeeecCCCCeEEeeccCCeEEEEccCCceeh-eeecccccccc
Confidence 999986 77777665432210 00001221 68999999999999999999999999887554 4443 23344
Q ss_pred eeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933 426 NRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANG 489 (497)
Q Consensus 426 v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~ 489 (497)
+..+.|+| +|++ +|+++.+|. .||+...+.. ..+...|.+++|.|+.+.|-.-..
T Consensus 235 ~~~~~wsP--nG~Y-----iAAs~~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 235 FSDLQWSP--NGKY-----IAASTLDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred eEEEEEcC--CCcE-----EeeeccCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEee
Confidence 88899999 7888 999999999 9996665333 567789999999999998766553
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.2e-19 Score=157.34 Aligned_cols=294 Identities=15% Similarity=0.234 Sum_probs=196.7
Q ss_pred hhhhhcCCCCCCCcccCCcceEEEEEcC-----CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933 15 KCSQAFGERNPDEELQDVDIVSAIEFDK-----TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY 89 (497)
Q Consensus 15 ~~~~~~~~~~~~~~~~h~~~I~~i~~sp-----~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (497)
||..+||+...-+..-..=.|+-+.|.. +.++||. +|+...|..+.+....+ .+- -...
T Consensus 10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGgaf~ViPl~k-~Gr-------~d~~ 73 (472)
T KOG0303|consen 10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGAFLVIPLVK-TGR-------MDAS 73 (472)
T ss_pred hhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcceeeccccc-ccc-------cCCC
Confidence 6788898766666655556777777765 3445543 44444443221111100 000 0122
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 169 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (497)
.-.+.||+ ++|..++|+| .+...+|+||.|.+|.||++..+.+....
T Consensus 74 ~P~v~GHt------------~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~l-------------------- 120 (472)
T KOG0303|consen 74 YPLVCGHT------------APVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDL-------------------- 120 (472)
T ss_pred CCCccCcc------------ccccccccCc-cCCceeecCCCCceEEEEECCCcccccCc--------------------
Confidence 33467888 9999999987 45578999999999999999765533221
Q ss_pred cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCce
Q 010933 170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQ 247 (497)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~ 247 (497)
.+++..+ .+|...|--++|+|.. +.|+++ .|..|.+||+.++..
T Consensus 121 ---------------------------------tepvv~L-~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea 166 (472)
T KOG0303|consen 121 ---------------------------------TEPVVEL-YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA 166 (472)
T ss_pred ---------------------------------ccceEEE-eecceeEEEEeecccchhhHhhccCCceEEEEeccCCce
Confidence 1244444 8999999999999954 456666 999999999996665
Q ss_pred eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccccccc
Q 010933 248 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 327 (497)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 327 (497)
.+. +. |.+.|+++.|+.+| .+|++.+.|+.|||||.++++.+... ...++ ..-.
T Consensus 167 li~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~-~~heG---------------~k~~ 220 (472)
T KOG0303|consen 167 LIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEG---------------AKPA 220 (472)
T ss_pred eee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec-ccccC---------------CCcc
Confidence 554 33 99999999999999 99999999999999999999765321 11112 2345
Q ss_pred EEEEeeCCCEEEEE----ecCeEEEEecCCCCcee--eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-C
Q 010933 328 DIKFANDGQHLLSR----DYMNLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-Y 400 (497)
Q Consensus 328 ~~~~s~~g~~l~~~----~~~~i~lwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~ 400 (497)
.+.|-.+|.++.+| ++..+-+||..+-.+++ .++....+. .--=|.+|.+.|+.+| .
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv----------------l~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV----------------LLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCce----------------EEeeecCCCCEEEEEecC
Confidence 66788889866666 34899999987644443 333333321 2234677877776544 5
Q ss_pred CCcEEEEEcCCCCcceEEEe--ccCcceeeeEeec
Q 010933 401 SNLLRIFSHGVGSAGGITVE--AGKNENRKPILQA 433 (497)
Q Consensus 401 dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~~ 433 (497)
|+.|+.|.+.+...-.+.+. ....+-+.+.+-|
T Consensus 285 D~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 285 DSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred CcceEEEEecCCCceeEEecccccCCccccccccc
Confidence 99999999987654334443 2334555566555
No 163
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.5e-19 Score=143.70 Aligned_cols=262 Identities=15% Similarity=0.164 Sum_probs=180.2
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
..|.+-+++|.+++|++|..+|.|-+..+...... ....|.-..+-.+++|+ ++|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence 45667789999999999999999999998653210 00011123345568999 999
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
+.++|. ..+|++++ ||.|+-|........ ...-
T Consensus 66 y~~~f~----d~~Lls~g-dG~V~gw~W~E~~es------------------------------------------~~~K 98 (325)
T KOG0649|consen 66 YYLAFH----DDFLLSGG-DGLVYGWEWNEEEES------------------------------------------LATK 98 (325)
T ss_pred eeeeee----hhheeecc-CceEEEeeehhhhhh------------------------------------------ccch
Confidence 999993 23555555 599999988654321 1122
Q ss_pred EEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933 193 KIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 271 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (497)
++|.+..+..... -.-..|+++...|..+.++.+ .|+.++-||++ .++.... +.+|++.|++++-
T Consensus 99 ~lwe~~~P~~~~~------~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~-------~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 99 RLWEVKIPMQVDA------VEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQRE-------YRGHTDYVHSVVG 164 (325)
T ss_pred hhhhhcCccccCc------ccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEE-------EcCCcceeeeeee
Confidence 3454443321111 112368899999877777666 99999999999 5655554 8899999999998
Q ss_pred eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc-ccccEEEEeeCCCEEEEEecCeEEEEe
Q 010933 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWD 350 (497)
Q Consensus 272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~i~lwd 350 (497)
.... ..+++|++||++|+||+++++.+ +.++.. ...+.++.|. ..|.+++. +..+|++|....+.+|.
T Consensus 165 R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~y----k~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 165 RNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEPY----KNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWH 233 (325)
T ss_pred cccC-cceeecCCCccEEEEecccccee----EEeccc----cChhhcCcccCceeEEEec--cCceEEecCCCceeEEe
Confidence 5555 68999999999999999998765 444331 1111222222 34555554 56799999889999999
Q ss_pred cCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 351 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
++. .++...+...... ..+.|.. ..++++++.+.+.-|.+.
T Consensus 234 Lrs-se~t~vfpipa~v----------------~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 234 LRS-SESTCVFPIPARV----------------HLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ccC-CCceEEEecccce----------------eEeeeec--ceEEEeccccceeeeeec
Confidence 996 6666666543331 3577754 478889988899999876
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=5.7e-20 Score=168.62 Aligned_cols=144 Identities=8% Similarity=0.064 Sum_probs=109.0
Q ss_pred CCCEEEE---EecCeEEEEecCCCCceee-eeeecccccccccccCCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEE
Q 010933 334 DGQHLLS---RDYMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 334 ~g~~l~~---~~~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~ 408 (497)
+.+.+|+ |+.|.|-||+++..+++-. .+.+- .+... ++++.|.| |...||++++||.|++|.
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------~Ngt~---vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------FNGTL---VTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCccccccc----------ccCce---eeecccCCCChHHeeecccCceEEEEE
Confidence 3455554 3459999999986555321 11111 11112 36999999 778999999999999999
Q ss_pred cCCCCc------ceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcccccccCCCeEEEEEec
Q 010933 409 HGVGSA------GGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHELSYNLSSKLLHLAWHP 479 (497)
Q Consensus 409 ~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~~~~~~~~~i~~l~~~p 479 (497)
+..+.. ....+.+|...|..+.|.|- -. -+|+++++|.. ++| ........+.+|...|..++|||
T Consensus 657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPL-Aa-----dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp 730 (1012)
T KOG1445|consen 657 LTANGLPENEMTPEKILTIHGEKITSLRFHPL-AA-----DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP 730 (1012)
T ss_pred eccCCCCcccCCcceeeecccceEEEEEecch-hh-----hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC
Confidence 977532 24678999999999999994 22 24899999999 999 44455667889999999999999
Q ss_pred CCCEEEEEe-CCceEEEe
Q 010933 480 TTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 480 ~~~~la~~~-~~~~~i~~ 496 (497)
+|+.+|+.+ ++.+++|+
T Consensus 731 dGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred CCcceeeeecCceEEEeC
Confidence 999999998 55588886
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.5e-20 Score=166.14 Aligned_cols=222 Identities=14% Similarity=0.172 Sum_probs=176.5
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
.-.|++......|+++|+..+.|+|||+... .+.+.+++|+ ..|+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-----------------------l~hr~lkdh~------------stvt 125 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK-----------------------LIHRFLKDHQ------------STVT 125 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH-----------------------HHhhhccCCc------------ceeE
Confidence 4455555555689999999999999999743 3467789999 8899
Q ss_pred EEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceE
Q 010933 114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 193 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (497)
++.| +....+|++++..|.|.|..+.++......+
T Consensus 126 ~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~------------------------------------------- 160 (673)
T KOG4378|consen 126 YVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFT------------------------------------------- 160 (673)
T ss_pred EEEe--cCCcceeEEeccCCcEEEEecccCcccccee-------------------------------------------
Confidence 9999 6778899999999999999988766322110
Q ss_pred EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933 194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 271 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (497)
.+....|.-+.|+|..+.+++ + ++|.|.+||+. +...+.- ....|..+...++|
T Consensus 161 -----------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~-g~sp~~~------~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 161 -----------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ-GMSPIFH------ASEAHSAPCRGICF 216 (673)
T ss_pred -----------------cCCCCeEEEeecccccceeeEeeccCCeEEEEecc-CCCcccc------hhhhccCCcCccee
Confidence 122345667899998877765 5 99999999998 4433332 26789999999999
Q ss_pred eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEe
Q 010933 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWD 350 (497)
Q Consensus 272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd 350 (497)
+|..+.+|++.+.|..|.+||.+..+.. ..+.. ..+...++|+++|.+|++|+. |.|..||
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y--------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQAST----DRLTY--------------SHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cCCccceEEEecccceEEEeeccccccc----ceeee--------------cCCcceeeecCCceEEEeecCCceEEEEe
Confidence 9998789999999999999999976544 33322 357899999999999999965 9999999
Q ss_pred cCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC
Q 010933 351 IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 392 (497)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 392 (497)
++....++..+..|...| ++++|-|..
T Consensus 279 ~R~~k~Pv~v~sah~~sV---------------t~vafq~s~ 305 (673)
T KOG4378|consen 279 MRSTKAPVAVRSAHDASV---------------TRVAFQPSP 305 (673)
T ss_pred cccCCCCceEeeecccce---------------eEEEeeecc
Confidence 998788999999999865 688887754
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.6e-19 Score=172.44 Aligned_cols=311 Identities=12% Similarity=0.140 Sum_probs=204.5
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccccee
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 113 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~ 113 (497)
+-..+.|+|-...++++...-.|+|||.+.++. +..|..+... ...|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-----------------------l~~F~n~~~~---------~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL-----------------------LNGFDNGAFP---------DTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCce-----------------------eccccCCCCC---------CCccc
Confidence 456788999888899988777999999988753 4444443321 26799
Q ss_pred EEEEEecCCCCEEEEEeCCccEEEeecCchh---eeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 114 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQK---VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
++.+....|..++++|+.||.|+||+-.... .+.+.... .+....... .+.-+-..+....-.+.+++- -.
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~---~Ls~~~~~~-r~~~~v~dWqQ~~G~Ll~tGd--~r 1187 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS---SLSDQLPGA-RGTGLVVDWQQQSGHLLVTGD--VR 1187 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeec---cccccCccC-CCCCeeeehhhhCCeEEecCC--ee
Confidence 9999866677899999999999999754322 11110000 000000000 111122222222223333321 45
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeC-CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC--e
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNN-SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV--I 266 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--i 266 (497)
.|++||.+... +..-...+....|++++-+ ..|+.+++| .||.|++||.+.......+ .....|++. |
T Consensus 1188 ~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v-----~~~R~h~~~~~I 1259 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQ---VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV-----CVYREHNDVEPI 1259 (1387)
T ss_pred EEEEEecccce---eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc-----eeecccCCcccc
Confidence 89999998542 3332224556677777664 357999999 9999999999854432111 125677777 9
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 346 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i 346 (497)
..+.+.+.|-..|++|+.||.|++||+|... ......+-.. ....+..+++..++....+|+|+.+.|
T Consensus 1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~-----------~~yGs~lTal~VH~hapiiAsGs~q~i 1327 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAH-----------WEYGSALTALTVHEHAPIIASGSAQLI 1327 (1387)
T ss_pred eeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeec-----------cccCccceeeeeccCCCeeeecCcceE
Confidence 9999999884569999999999999999842 1111111110 001135899999999999999987999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
+||++. ++.+..++.+.... ...+-.+.+++|+|-.-+||+|+.|..|.||.....
T Consensus 1328 kIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1328 KIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999996 66666666444322 112223368999999999999999999999998765
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.7e-20 Score=167.87 Aligned_cols=272 Identities=14% Similarity=0.161 Sum_probs=188.4
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|.+.|++++|.|....|++++.||.|++|+++... ....-..+.+.+|++|+
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~---------------~s~~~~~epi~tfraH~----------- 344 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK---------------KSAEKDVEPILTFRAHE----------- 344 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC---------------CccccceeeeEEEeccc-----------
Confidence 4589999999999999999999999999999995422 12223567789999999
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
++|.|++. .++++.+++|+.||+|+.|++.... .....
T Consensus 345 -gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds-------------------------------------- 382 (577)
T KOG0642|consen 345 -GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DPDDS-------------------------------------- 382 (577)
T ss_pred -CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Ccccc--------------------------------------
Confidence 99999999 6889999999999999999886221 11000
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
+|. ..+...+.||.+.|+.+++++....|+++ .||++++|+.. .... .++. -..-.+...
T Consensus 383 ------~dp------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~-~~~~-~~f~-----~~~e~g~Pl 443 (577)
T KOG0642|consen 383 ------YDP------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT-EESP-CTFG-----EPKEHGYPL 443 (577)
T ss_pred ------cCc------chhccceeccccceeeeeecccccceeeecCCceEEeeccC-CcCc-cccC-----CccccCCcc
Confidence 000 01111137999999999999988899999 99999999987 3333 1110 111122234
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNL 346 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i 346 (497)
++.+-... ++-...+.....+++...+... ...+++. ...+... -...++.+.++|.+.+.+++ .++.|
T Consensus 444 svd~~ss~---~a~~~~s~~~~~~~~~~~ev~s-~~~~~~s-~~~~~~~-----~~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 444 SVDRTSSR---PAHSLASFRFGYTSIDDMEVVS-DLLIFES-SASPGPR-----RYPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred eEeeccch---hHhhhhhcccccccchhhhhhh-heeeccc-cCCCccc-----ccCccceEEecCCCCeeEecccCCce
Confidence 55554332 2222223333444333322111 1133332 1111110 02457888999999888887 55999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
+++|..+ ++++.....|...+ +++++.|+|-+|++++.|+.+++|.+....
T Consensus 514 r~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 514 RFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhccchh
Confidence 9999987 89999999888765 799999999999999999999999997653
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.1e-19 Score=158.35 Aligned_cols=198 Identities=18% Similarity=0.220 Sum_probs=151.2
Q ss_pred cCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeE
Q 010933 211 HAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 288 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 288 (497)
.+|+..|.+++|+..- ..|++| .|.+|++||+. .+++..+ +..|...|.++.|+|..+..|++|+.|+++
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~-~g~p~~s-------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD-TGKPKSS-------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcC-CCCccee-------hhhcCCceeEEEecCCCceEEEeccccceE
Confidence 5899999999998754 466777 99999999999 6666665 678999999999999988999999999999
Q ss_pred EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE-EEEEe-cCeEEEEecCCCCceeeeeeeccc
Q 010933 289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRD-YMNLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
.+.|.|..... .+.|.. .+.|-.++|.|.... +++++ ||.|+-+|++..++++.+++.|..
T Consensus 312 ~l~D~R~~~~s---~~~wk~--------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~ 374 (463)
T KOG0270|consen 312 ALKDCRDPSNS---GKEWKF--------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD 374 (463)
T ss_pred EeeeccCcccc---CceEEe--------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC
Confidence 99999952211 144443 367999999997654 44554 499999999998899999999999
Q ss_pred ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccC---cceeeeEeecCCCcccccc
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGK---NENRKPILQAAPRARRSSL 442 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~ 442 (497)
.+ .++++++. ..+|++++.|+.+++|++...... ....|. +...+.++.|. ...
T Consensus 375 ~I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~-~a~---- 432 (463)
T KOG0270|consen 375 EI---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPD-VAF---- 432 (463)
T ss_pred Cc---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCC-cce----
Confidence 76 57888774 457889999999999998764332 111111 12334444443 222
Q ss_pred cceeEeeccCc-eec
Q 010933 443 SNLTRGLYRQA-HEN 456 (497)
Q Consensus 443 ~~l~~~~~d~~-~iw 456 (497)
.++.|+..+. ++|
T Consensus 433 -~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 433 -TLAFGGEKAVLRVW 446 (463)
T ss_pred -EEEecCccceEEEe
Confidence 4899998887 999
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=7.4e-20 Score=155.09 Aligned_cols=266 Identities=14% Similarity=0.210 Sum_probs=182.7
Q ss_pred cCCcceEEEEEcCC----CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 30 ~h~~~I~~i~~sp~----g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
.|.+....++|+-+ ..+||+|+.-|.|+|.|+.+++ +...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-----------------------~~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-----------------------CSKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh-----------------------hccceeccC--------
Confidence 36677788888764 3588999999999999998764 467789999
Q ss_pred cccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..|+.+.++| .+.++++++|.|..|++|++++..++.+...
T Consensus 136 ----~sINeik~~p-~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------------------------- 176 (385)
T KOG1034|consen 136 ----GSINEIKFHP-DRPQLVLSASKDHSVRLWNIQTDVCVAVFGG---------------------------------- 176 (385)
T ss_pred ----ccchhhhcCC-CCCcEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence 8899999986 4457999999999999999998886654311
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEE------eecC---
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI------VDMK--- 255 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~------~~~~--- 255 (497)
..+|.+.|.++.|+++|..|+++ .|.++++|++.... .... +..+
T Consensus 177 ------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~-f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 177 ------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE-FKNKLELSITYSPNKTT 231 (385)
T ss_pred ------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH-HhhhhhhhcccCCCCcc
Confidence 27999999999999999999998 99999999998311 1000 0000
Q ss_pred ----------C--CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc-CCcccccccceecccccccCCccccccc
Q 010933 256 ----------P--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEI 322 (497)
Q Consensus 256 ----------~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (497)
| .+-..|...|-|+.|- | .++++-+-++.|..|-.- -++.+. .+... .........++-.
T Consensus 232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~~---~vkp~-es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESIH---NVKPP-ESATTILGEFDYP 304 (385)
T ss_pred CcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhhh---ccCCC-ccceeeeeEeccC
Confidence 0 0223466666677665 4 678888889999999873 222110 00000 0000000111222
Q ss_pred cccccEEE--EeeCCCEEEEEec-CeEEEEecCCCCcee-eeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE
Q 010933 323 IASISDIK--FANDGQHLLSRDY-MNLKLWDIRMDSTPV-ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 398 (497)
Q Consensus 323 ~~~i~~~~--~s~~g~~l~~~~~-~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 398 (497)
...|+-+. |+|-++.||.|.. |.|.+||++....+. .++..+.. ...|+..+|+.|+..|+..
T Consensus 305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~-------------~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS-------------GSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc-------------cceeeeeeecccCcEEEEE
Confidence 23455554 4566889999866 999999998633322 22222221 1224789999999999999
Q ss_pred eCCCcEEEEEcC
Q 010933 399 SYSNLLRIFSHG 410 (497)
Q Consensus 399 ~~dg~i~vw~~~ 410 (497)
++|+.|.-||.-
T Consensus 372 cdd~~Vwrwdrv 383 (385)
T KOG1034|consen 372 CDDGTVWRWDRV 383 (385)
T ss_pred eCCCcEEEEEee
Confidence 999999999864
No 170
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=151.43 Aligned_cols=301 Identities=15% Similarity=0.147 Sum_probs=211.2
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 169 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (497)
.+.+.+|. +.|+++.| +.++++|++|+.|..+++|.++.-...++
T Consensus 49 qKD~~~H~------------GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------------- 93 (609)
T KOG4227|consen 49 QKDVREHT------------GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT--------------------- 93 (609)
T ss_pred hhhhhhhc------------cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC---------------------
Confidence 55677888 88999999 67799999999999999999976443221
Q ss_pred cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCcee
Q 010933 170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC 248 (497)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~ 248 (497)
.+++...-..|.+.|.|++|...++.+.+| .+++|.+-|++ ..+.
T Consensus 94 ---------------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-t~qs 139 (609)
T KOG4227|consen 94 ---------------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-TKQS 139 (609)
T ss_pred ---------------------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc-ccee
Confidence 123332225677899999999999999999 99999999999 5555
Q ss_pred eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933 249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 328 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (497)
+.+. .-....+.|+.+..+|.. +.|++.+.++.|.+||.+....-. ..+-. .........
T Consensus 140 i~V~-----~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~-----------AN~~~~F~t 199 (609)
T KOG4227|consen 140 IYVA-----NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP-----------ANSGKNFYT 199 (609)
T ss_pred eeee-----cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee-----------cCCCcccee
Confidence 5431 111223489999999997 999999999999999999764211 11111 011245788
Q ss_pred EEEeeCC-CEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933 329 IKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406 (497)
Q Consensus 329 ~~~s~~g-~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v 406 (497)
+-|+|.. .+|++++. +-+-+||.+....++....+..+.... .....++.|+|+|..+++--....-.+
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~---------~~~~M~~~~~~~G~Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE---------NTEWMGSLWSPSGNQFMSIRRGKCPLY 270 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc---------chhhhheeeCCCCCeehhhhccCCCEE
Confidence 8999976 45666655 889999998766666665554443210 001137899999999888777777778
Q ss_pred EEcCCCCcceEEEec------cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCC------C-------------
Q 010933 407 FSHGVGSAGGITVEA------GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSS------G------------- 460 (497)
Q Consensus 407 w~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~------~------------- 460 (497)
||+-+.......+.. ....+.+++|.... . +++|+++=. +||... +
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~---~-----v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~ 342 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY---T-----VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPS 342 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecce---e-----eeccCcccceEEEecCCCccccCccccCcchhhCch
Confidence 888764332222221 12356777776532 2 788888877 999211 1
Q ss_pred ------CcccccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 461 ------HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 461 ------~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
....+.+|...++.+.|+|...+|++.+ .+.+++|+
T Consensus 343 ~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 343 EIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred hheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 0112457888999999999999888777 77899996
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.4e-19 Score=177.23 Aligned_cols=260 Identities=16% Similarity=0.252 Sum_probs=193.7
Q ss_pred CCCcccCCcceEEEEEcCCCCE----EEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccc
Q 010933 25 PDEELQDVDIVSAIEFDKTGDY----LAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 100 (497)
Q Consensus 25 ~~~~~~h~~~I~~i~~sp~g~~----lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 100 (497)
+...++-...-+.++|.+.|.. ||.|.+||.|.+||...-.. ......+.++..|+
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------------~~~~~~la~~~~h~--- 116 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------------NASEEVLATKSKHT--- 116 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------------CcchHHHhhhcccC---
Confidence 3344455678899999998766 88999999999999875211 11346678888899
Q ss_pred ccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccc
Q 010933 101 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 180 (497)
Q Consensus 101 ~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (497)
+.|..+.|.+ -.+..|++|+.||.|.|||+..-+.-... .
T Consensus 117 ---------G~V~gLDfN~-~q~nlLASGa~~geI~iWDlnn~~tP~~~--~---------------------------- 156 (1049)
T KOG0307|consen 117 ---------GPVLGLDFNP-FQGNLLASGADDGEILIWDLNKPETPFTP--G---------------------------- 156 (1049)
T ss_pred ---------Cceeeeeccc-cCCceeeccCCCCcEEEeccCCcCCCCCC--C----------------------------
Confidence 9999999953 23448999999999999999873311100 0
Q ss_pred ccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCc
Q 010933 181 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 258 (497)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 258 (497)
-..-.+.|.+++|+..-. .|+++ .+|.+.|||++..+..++.
T Consensus 157 -----------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l------- 200 (1049)
T KOG0307|consen 157 -----------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL------- 200 (1049)
T ss_pred -----------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-------
Confidence 023466899999998554 45667 8999999999955444442
Q ss_pred cCCCC--CCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee
Q 010933 259 MDDLT--EVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 333 (497)
Q Consensus 259 ~~~~~--~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 333 (497)
..+. ..+..++|+|+....+++++.|. .|.+||+|.-.. ..+++ .+|...|.+|.|++
T Consensus 201 -s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~-------------~~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 201 -SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKIL-------------EGHQRGILSLSWCP 263 (1049)
T ss_pred -ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhh-------------cccccceeeeccCC
Confidence 2222 34678999999877888888754 699999986432 12344 44678999999999
Q ss_pred CC-CEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcC
Q 010933 334 DG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHG 410 (497)
Q Consensus 334 ~g-~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~ 410 (497)
.+ ++|+++ -|+.|.+|+.++ ++.+..+.....+. ..+.|+|..- .+++++.||.|-||.+.
T Consensus 264 ~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW~---------------fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNWC---------------FDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcce---------------eeeeecCCCcchhhhheeccceeeeeee
Confidence 77 666665 579999999997 88898888766654 6899999654 88889999999999998
Q ss_pred CCC
Q 010933 411 VGS 413 (497)
Q Consensus 411 ~~~ 413 (497)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 754
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=2.3e-18 Score=143.55 Aligned_cols=273 Identities=14% Similarity=0.148 Sum_probs=187.3
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-CCEEEEE-cC-------CeEEEEeCccCceeeEEeecCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DD-------LRINLWNLEISDQCFNIVDMKP 256 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d-------~~i~iwd~~~~~~~~~~~~~~~ 256 (497)
+-.++.+.+-..+.....-.-+. +..|.+.|+.++-+|. .+.|+++ .+ ..+-||.+...........+..
T Consensus 36 lK~dNqVhll~~d~e~s~l~skv-f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~ 114 (370)
T KOG1007|consen 36 LKEDNQVHLLRLDSEGSELLSKV-FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLEC 114 (370)
T ss_pred cCCcceeEEEEecCccchhhhhh-hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhH
Confidence 33456677766665433222233 3688899999999994 5555654 31 3578998873322211000000
Q ss_pred -CccC-CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-
Q 010933 257 -SNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN- 333 (497)
Q Consensus 257 -~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~- 333 (497)
..+. .+-+.|.++.|.|++ ..+++-. |..|.+|++..+..+...+..-.. .++....++-+|+|
T Consensus 115 v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~ss~s-----------~e~~~~ftsg~WspH 181 (370)
T KOG1007|consen 115 VASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVLSSES-----------AEMRHSFTSGAWSPH 181 (370)
T ss_pred hhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeeccccc-----------ccccceecccccCCC
Confidence 0122 344689999999998 7777654 889999999887643211111111 12445678889998
Q ss_pred -CCCEEEEEecCeEEEEecCCCCceeeee-eecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcC
Q 010933 334 -DGQHLLSRDYMNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHG 410 (497)
Q Consensus 334 -~g~~l~~~~~~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~ 410 (497)
+|+.+++.++++++.||+++ .+....+ ..|...+ +++.|.|+.+ +|++|++||.|++||.+
T Consensus 182 Hdgnqv~tt~d~tl~~~D~RT-~~~~~sI~dAHgq~v---------------rdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 182 HDGNQVATTSDSTLQFWDLRT-MKKNNSIEDAHGQRV---------------RDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred CccceEEEeCCCcEEEEEccc-hhhhcchhhhhccee---------------eeccCCCCceEEEEEcCCCccEEEEecc
Confidence 78999999999999999997 4444444 4555443 7899999876 57899999999999999
Q ss_pred CCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec----CCC--------------------------
Q 010933 411 VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN----SSS-------------------------- 459 (497)
Q Consensus 411 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw----~~~-------------------------- 459 (497)
..+.....+.+|...++++.|.|. -.+. +.+|+.|.. .+| ...
T Consensus 246 ~tk~pv~el~~HsHWvW~VRfn~~-hdqL-----iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~ 319 (370)
T KOG1007|consen 246 KTKFPVQELPGHSHWVWAVRFNPE-HDQL-----ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ 319 (370)
T ss_pred CCCccccccCCCceEEEEEEecCc-cceE-----EEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence 887888999999999999999996 4455 788888888 777 110
Q ss_pred -CCcccccccCCCeEEEEEecCCCEE-EEEeCCceEE
Q 010933 460 -GHHELSYNLSSKLLHLAWHPTTNLI-ACANGNSLFF 494 (497)
Q Consensus 460 -~~~~~~~~~~~~i~~l~~~p~~~~l-a~~~~~~~~i 494 (497)
+.+.....|+..|.+++|+...+.+ |+-+.||-.|
T Consensus 320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred ccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 0112344788999999999988874 6666776444
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=171.42 Aligned_cols=260 Identities=17% Similarity=0.211 Sum_probs=192.5
Q ss_pred cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
.++|-.+|+|+.|...|.++++|+.|..++||..+++ .++..++||+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-----------------------~~lAs~rGhs---------- 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-----------------------RCLASCRGHS---------- 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccch-----------------------hhhccCCCCc----------
Confidence 4578999999999999999999999999999998876 4589999999
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
+.|+.++. +.++.+++++|.|..|++|.+..+..+.+
T Consensus 233 --~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv--------------------------------------- 269 (1113)
T KOG0644|consen 233 --GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV--------------------------------------- 269 (1113)
T ss_pred --cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH---------------------------------------
Confidence 88999999 56778899999999999999998774433
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
+.+|++.|++++|+|-. .++.||++++||.+-.... . ...|..+. ....+.
T Consensus 270 ----------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~--y-~prp~~~~-~~~~~~ 320 (1113)
T KOG0644|consen 270 ----------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRI--Y-VPRPLKFT-EKDLVD 320 (1113)
T ss_pred ----------------------HhccccceeeeccCccc---cCCCCCceEeccccccccc--c-CCCCCCcc-ccccee
Confidence 27999999999999965 3349999999998821111 1 11111121 235667
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEE-ecCe
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR-DYMN 345 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~ 345 (497)
++.|..++ .-+++++.|+.-..|.+..-.. .. ..+.-+.++.+- .+.+++ .+-.
T Consensus 321 s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~--------~~---------------~~lif~t~ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 321 SILFENNG-DRFLTGSRDGEARNHEFEQLAW--------RS---------------NLLIFVTRSSDLSSIVVTARNDHR 376 (1113)
T ss_pred eeeccccc-cccccccCCcccccchhhHhhh--------hc---------------cceEEEeccccccccceeeeeeeE
Confidence 77888888 8899999999988887754211 10 111222222222 345555 5588
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
+++|++.+ +.+...+.+|...+ .-+.++|-+ +...+++.||.+.|||+-.+..+.....+|.
T Consensus 377 ~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~- 439 (1113)
T KOG0644|consen 377 LCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG- 439 (1113)
T ss_pred eeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-
Confidence 99999986 88888888888764 468999954 4556999999999999999877766665543
Q ss_pred ceeeeEeec
Q 010933 425 ENRKPILQA 433 (497)
Q Consensus 425 ~v~~~~~~~ 433 (497)
.+..-+|++
T Consensus 440 kl~d~kFSq 448 (1113)
T KOG0644|consen 440 KLVDGKFSQ 448 (1113)
T ss_pred eeeccccCC
Confidence 333445665
No 174
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.5e-17 Score=157.41 Aligned_cols=314 Identities=15% Similarity=0.239 Sum_probs=212.0
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|+-.++|.++||+++++|+|..||+|.+|.--..+. +-...+.+.-|.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~----------- 251 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH----------- 251 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc-----------
Confidence 45778899999999999999999999999997443110 112345577787
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++| +++|.+|++|+..+.+-+|.+.+++.+-
T Consensus 252 -~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqf----------------------------------------- 287 (792)
T KOG1963|consen 252 -DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQF----------------------------------------- 287 (792)
T ss_pred -cccceeEE--ecCCceEeecccceEEEEEeecCCCccc-----------------------------------------
Confidence 77999999 6899999999999999999999877221
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC---CccCCCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP---SNMDDLTE 264 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~ 264 (497)
+..-.++|..+.++||+...+.. .|..|.+...........+-.+++ .+-....+
T Consensus 288 ---------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 288 ---------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred ---------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 24557789999999999999888 999999998752222222111111 11122356
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 342 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-- 342 (497)
-.+.++++|.- +.++..+..|.|.+||+.+...+.+. ++...+.. .+. ..+...+++++.+-.|.++++..
T Consensus 347 l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~-~v~~~n~~-~~~----~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 347 LTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKL-QVCDENYS-DGD----VNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred cceeEEEcCCC-CceeecCCCceEEEEeccccceeeeE-EEEeeccc-CCc----ceeEEeeeeehhhccceEEEEeeee
Confidence 67888999965 78889999999999999886654221 11111000 000 13345788888888899999853
Q ss_pred -------c--CeEEEEecCCCCc---eeeeee-ecccccccccccCCCCCccceeEEE-EcCCCC-EEEEEeCCCcEEEE
Q 010933 343 -------Y--MNLKLWDIRMDST---PVATFK-IHEHLRPKLCDLYNNDSIFDKFECS-VSGDGL-HFATGSYSNLLRIF 407 (497)
Q Consensus 343 -------~--~~i~lwd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~-~l~s~~~dg~i~vw 407 (497)
+ -.+++|-.....+ +...+. .|.... ...+ .++... ..++++.||.++||
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~---------------vat~~~~~~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAF---------------VATIFLNPTRSVRCVTASVDGDFKIW 484 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCcee---------------EEEEEecCcccceeEEeccCCeEEEE
Confidence 1 3678897753221 222222 233221 1233 333333 88999999999999
Q ss_pred EcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEE
Q 010933 408 SHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACA 487 (497)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~ 487 (497)
-+...+.. ..+...-.+.+++. -|..++++++|+.||..||++
T Consensus 485 ~~~~~~n~----~k~~s~W~c~~i~s---------------------------------y~k~~i~a~~fs~dGslla~s 527 (792)
T KOG1963|consen 485 VFTDDSNI----YKKSSNWTCKAIGS---------------------------------YHKTPITALCFSQDGSLLAVS 527 (792)
T ss_pred EEeccccc----CcCccceEEeeeec---------------------------------cccCcccchhhcCCCcEEEEe
Confidence 99765332 11111111111111 145688999999999999999
Q ss_pred eCCceEEEe
Q 010933 488 NGNSLFFHY 496 (497)
Q Consensus 488 ~~~~~~i~~ 496 (497)
.++.+.+|.
T Consensus 528 ~~~~Itiwd 536 (792)
T KOG1963|consen 528 FDDTITIWD 536 (792)
T ss_pred cCCEEEEec
Confidence 999999996
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=3.6e-18 Score=142.43 Aligned_cols=260 Identities=18% Similarity=0.223 Sum_probs=178.5
Q ss_pred cCCcceEEEEEcCC-CCEEEEeecC-------CeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccc-ccCccc
Q 010933 30 QDVDIVSAIEFDKT-GDYLAVGDRG-------GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEF 100 (497)
Q Consensus 30 ~h~~~I~~i~~sp~-g~~lasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~ 100 (497)
.|.+.|..++-+|. .+.|+|+..+ ..+-||.+..... +......+++..+. .+-
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~--------------~S~~~tlE~v~~Ldteav--- 123 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG--------------QSNSSTLECVASLDTEAV--- 123 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC--------------ccccchhhHhhcCCHHHh---
Confidence 36789999999994 5566666542 2578998865432 01111223333343 233
Q ss_pred ccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccc
Q 010933 101 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 180 (497)
Q Consensus 101 ~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (497)
+.|.++.|. |++..+++.. |..|.+|++..+..+. .......
T Consensus 124 ---------g~i~cvew~--Pns~klasm~-dn~i~l~~l~ess~~v-aev~ss~------------------------- 165 (370)
T KOG1007|consen 124 ---------GKINCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIV-AEVLSSE------------------------- 165 (370)
T ss_pred ---------CceeeEEEc--CCCCeeEEec-cCceEEEEcccCcchh-eeecccc-------------------------
Confidence 789999995 5777887776 7889999998765321 1000000
Q ss_pred ccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEEcCCeEEEEeCccCceeeEEeecCCCc
Q 010933 181 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSADDLRINLWNLEISDQCFNIVDMKPSN 258 (497)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 258 (497)
-.+|....++-+|+| +|+.+++..|+++..||+++..+...+
T Consensus 166 -----------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI------- 209 (370)
T KOG1007|consen 166 -----------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI------- 209 (370)
T ss_pred -----------------------------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch-------
Confidence 024566778889988 888888889999999999966655554
Q ss_pred cCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CE
Q 010933 259 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QH 337 (497)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~ 337 (497)
-..|...+..+.|+|+-..+|++|+.||.|++||.|..+... . .+.+|...+.++.|+|.- ++
T Consensus 210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv---~-------------el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV---Q-------------ELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc---c-------------ccCCCceEEEEEEecCccceE
Confidence 567889999999999976789999999999999999754321 2 235678999999999964 45
Q ss_pred EEEE-ecCeEEEEecCCCCc----------------------------eeeeeeecccccccccccCCCCCccceeEEEE
Q 010933 338 LLSR-DYMNLKLWDIRMDST----------------------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 388 (497)
Q Consensus 338 l~~~-~~~~i~lwd~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (497)
+++| +|..|.+|....-.. .+.++..|+. ++ ++++|
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED------------SV---Y~~aW 338 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED------------SV---YALAW 338 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc------------ce---EEEee
Confidence 5565 679999997643110 1222333333 33 69999
Q ss_pred cCCC-CEEEEEeCCCcEEEEEcCC
Q 010933 389 SGDG-LHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 389 s~~~-~~l~s~~~dg~i~vw~~~~ 411 (497)
|.-. -.+|+-+.||++.|=++..
T Consensus 339 SsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccCCCeeEEEeccCceEEeecCCh
Confidence 9744 4667899999998876653
No 176
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=2.3e-18 Score=152.41 Aligned_cols=245 Identities=16% Similarity=0.184 Sum_probs=180.3
Q ss_pred cCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCe
Q 010933 211 HAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 287 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 287 (497)
.-+..+|++++|+|.. +++++| ..|.|-+||+...++....+ ..+..|..+|.++.|+|.....+++.|.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 5678899999999954 466778 89999999995222211100 0167899999999999998789999999999
Q ss_pred EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeeccc
Q 010933 288 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 288 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
|++-|++....- .++.. +.....+..+.|+.+...++.+++ |...+||+++++.....+..|..
T Consensus 259 iR~~D~~~~i~e----~v~s~-----------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 259 IRLQDFEGNISE----EVLSL-----------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred eeeeeecchhhH----HHhhc-----------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 999999875322 11111 001245778888888888888876 99999999998887888888887
Q ss_pred ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcce---EEEeccCcceeeeEeecCCCcccccc
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRSSL 442 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~ 442 (497)
.+ ++++++|- ..+|||+|.|++.+|||++...... ...-.|...|++..|+|. .
T Consensus 324 KI---------------~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs-~------ 381 (498)
T KOG4328|consen 324 KI---------------TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS-G------ 381 (498)
T ss_pred cc---------------ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC-C------
Confidence 54 69999995 4689999999999999998754332 455689999999999995 2
Q ss_pred cceeEeeccCc-eecCCC-----CCcccccccCC------CeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 443 SNLTRGLYRQA-HENSSS-----GHHELSYNLSS------KLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 443 ~~l~~~~~d~~-~iw~~~-----~~~~~~~~~~~------~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
+.|++.+.|.. +||... ......+.|+. ......|.|+..++++|. .+.|-||+
T Consensus 382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 23788888888 999332 12222223322 223568999999999988 44566665
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.3e-18 Score=157.23 Aligned_cols=252 Identities=13% Similarity=0.163 Sum_probs=174.3
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccccc
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEK 167 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (497)
.+...++||+ +.|.+|.. .+.|.+|++|+.||+|+||.+.++.++...
T Consensus 391 ~~~lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~------------------ 438 (733)
T KOG0650|consen 391 RCALVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTV------------------ 438 (733)
T ss_pred eeeeeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEE------------------
Confidence 3445678999 99999999 678999999999999999999998865432
Q ss_pred CccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC--EEEEEcCCeEEEEeCccC
Q 010933 168 NFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSADDLRINLWNLEIS 245 (497)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~d~~i~iwd~~~~ 245 (497)
.-.+.|.|++|+|.+. .|+++.+.++.|-+..-+
T Consensus 439 --------------------------------------------~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 439 --------------------------------------------QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred --------------------------------------------eecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 2233566666766443 233332222333332211
Q ss_pred ce--------eeEEe------------ecCC---------CccCCCCCCeEEEEEeCCCCcEEEEEeCC---CeEEEEEc
Q 010933 246 DQ--------CFNIV------------DMKP---------SNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDM 293 (497)
Q Consensus 246 ~~--------~~~~~------------~~~~---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~v~d~ 293 (497)
.+ .+... ..+. ...-.|...|..+.|+..| .+|++...+ ..|.|+++
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEec
Confidence 00 00000 0000 0122477889999999999 999988664 57888888
Q ss_pred cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccc
Q 010933 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 373 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (497)
...+.. ..| ..-.+.+.++.|+|...+|++++...|++||+.. ...++.+......+
T Consensus 554 SK~~sQ----~PF-------------~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kwi----- 610 (733)
T KOG0650|consen 554 SKRKSQ----SPF-------------RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKWI----- 610 (733)
T ss_pred cccccc----Cch-------------hhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCeee-----
Confidence 765422 222 1224679999999999999999999999999985 66666665444433
Q ss_pred cCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc
Q 010933 374 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA 453 (497)
Q Consensus 374 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~ 453 (497)
..++.+|.|..|+.|+.|+++..||++-+....+.++.|...++.+++.+. .++||+|+.||.
T Consensus 611 ----------S~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-------yPLfas~sdDgt 673 (733)
T KOG0650|consen 611 ----------SSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-------YPLFASGSDDGT 673 (733)
T ss_pred ----------eeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-------cceeeeecCCCc
Confidence 589999999999999999999999998776666777777777777777663 344677766666
Q ss_pred -eec
Q 010933 454 -HEN 456 (497)
Q Consensus 454 -~iw 456 (497)
.++
T Consensus 674 v~Vf 677 (733)
T KOG0650|consen 674 VIVF 677 (733)
T ss_pred EEEE
Confidence 554
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=6.8e-16 Score=150.22 Aligned_cols=323 Identities=21% Similarity=0.344 Sum_probs=223.7
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..|...|.++.|.+.+..++.++.|+.+.+|+...+. .....+.++..
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~~~---------- 109 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE----------------------KLIKSLEGLHD---------- 109 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc----------------------eeEEEEeccCC----------
Confidence 4688999999999999999999999999999987753 12344444330
Q ss_pred ccceeEEEEEecCCCC-EEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 109 EEKINRVRWCAAPNGS-MFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~-~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..+..+.+. .+++. .++..+ .|+.+.+|+... ...
T Consensus 110 -~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---------------------------------------- 147 (466)
T COG2319 110 -SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKL---------------------------------------- 147 (466)
T ss_pred -CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeE----------------------------------------
Confidence 257777775 56666 455544 499999999986 221
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
... +..|...|..++|+|+++.++++ . |+.+++|+.. ....... +.+|.
T Consensus 148 --------------------~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~ 198 (466)
T COG2319 148 --------------------IRT-LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLST-------LAGHT 198 (466)
T ss_pred --------------------EEE-EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEe-------eccCC
Confidence 111 26888999999999999988887 5 9999999998 3444443 56699
Q ss_pred CCeEEEEEeCCCCc-EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933 264 EVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 341 (497)
Q Consensus 264 ~~i~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 341 (497)
..+.+++|+|++ . .+++++.|+.|++||.+.+..... .+.. |.... ...|+|++.+++++
T Consensus 199 ~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---~~~~-------------~~~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 199 DPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---TLSG-------------HSDSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred CceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---ecCC-------------CCcce-eEeECCCCCEEEEec
Confidence 999999999998 6 555558999999998885543310 2322 33333 23899999888766
Q ss_pred ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEE--
Q 010933 342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV-- 419 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~-- 419 (497)
.++.+++|++......+..+..|...+ .++.|.|++..+++++.|+.+.+|+..+.... ...
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~ 324 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSV---------------LSVAFSPDGKLLASGSSDGTVRLWDLETGKLL-SSLTL 324 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccE---------------EEEEECCCCCEEEEeeCCCcEEEEEcCCCceE-EEeee
Confidence 459999999986444244444554432 57899999899988999999999988877544 333
Q ss_pred eccCcceeeeEeecCCCcccccccceeEe-eccCc-eecCCCCCcc-cccccCCCeEEEEEecCCCEEEE-Ee-CCceEE
Q 010933 420 EAGKNENRKPILQAAPRARRSSLSNLTRG-LYRQA-HENSSSGHHE-LSYNLSSKLLHLAWHPTTNLIAC-AN-GNSLFF 494 (497)
Q Consensus 420 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~-~~d~~-~iw~~~~~~~-~~~~~~~~i~~l~~~p~~~~la~-~~-~~~~~i 494 (497)
..|...+..+.+ .. ++.. ++.+ ..++. .+|....... ........+..+.+++ ...+.. +. +..+.+
T Consensus 325 ~~~~~~~~~~~~-~~-~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 396 (466)
T COG2319 325 KGHEGPVSSLSF-SP-DGSL-----LVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRL 396 (466)
T ss_pred cccCCceEEEEE-CC-CCCE-----EEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEE
Confidence 478888888888 52 3222 3444 56655 6683333221 1222222288999999 633333 23 556777
Q ss_pred Ee
Q 010933 495 HY 496 (497)
Q Consensus 495 ~~ 496 (497)
|.
T Consensus 397 ~~ 398 (466)
T COG2319 397 WD 398 (466)
T ss_pred Ee
Confidence 75
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=9.1e-18 Score=151.42 Aligned_cols=271 Identities=15% Similarity=0.232 Sum_probs=188.8
Q ss_pred CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCC
Q 010933 45 DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 124 (497)
Q Consensus 45 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~ 124 (497)
..++.++.||.+.|.+-.. +......+|. ++|.+-+| ++||.
T Consensus 76 d~~~i~s~DGkf~il~k~~------------------------rVE~sv~AH~------------~A~~~gRW--~~dGt 117 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA------------------------RVERSISAHA------------AAISSGRW--SPDGA 117 (737)
T ss_pred ceEEEEcCCceEEEecccc------------------------hhhhhhhhhh------------hhhhhccc--CCCCc
Confidence 4678888999999987543 3456678898 99999999 78999
Q ss_pred EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccce
Q 010933 125 MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHAR 204 (497)
Q Consensus 125 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (497)
-|+++++||.|++|.-.+.- ...
T Consensus 118 gLlt~GEDG~iKiWSrsGML-RSt-------------------------------------------------------- 140 (737)
T KOG1524|consen 118 GLLTAGEDGVIKIWSRSGML-RST-------------------------------------------------------- 140 (737)
T ss_pred eeeeecCCceEEEEeccchH-HHH--------------------------------------------------------
Confidence 99999999999999854322 111
Q ss_pred eeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933 205 CQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 284 (497)
Q Consensus 205 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 284 (497)
+.....+|+|++|.|+.+.++.+..+.+.|=-+....+.++ +..|.+-|.++.|++.. +++++|++
T Consensus 141 -----l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~--------WkAHDGiiL~~~W~~~s-~lI~sgGE 206 (737)
T KOG1524|consen 141 -----VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIR--------WRAHDGLVLSLSWSTQS-NIIASGGE 206 (737)
T ss_pred -----HhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeE--------EeccCcEEEEeecCccc-cceeecCC
Confidence 12345689999999999999998667777766553344443 78999999999999998 99999999
Q ss_pred CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeec
Q 010933 285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIH 364 (497)
Q Consensus 285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~ 364 (497)
|-..++||.....+ |.. ..|.-+|++++|+|+ +.++.++.+.+|+=..+.
T Consensus 207 D~kfKvWD~~G~~L-------f~S-----------~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~----------- 256 (737)
T KOG1524|consen 207 DFRFKIWDAQGANL-------FTS-----------AAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV----------- 256 (737)
T ss_pred ceeEEeecccCccc-------ccC-----------Chhccceeeeeeccc-cceeeeeeeeeeecCCCc-----------
Confidence 99999999865422 222 345678999999999 788888877777322211
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccc
Q 010933 365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN 444 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 444 (497)
+ ++ ..++||+||..+++|+..|.+.+=-+-..+.....++....+-..+....
T Consensus 257 -G------------Si---fnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrd----------- 309 (737)
T KOG1524|consen 257 -G------------SI---FNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRD----------- 309 (737)
T ss_pred -c------------ce---EEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeeh-----------
Confidence 1 22 48999999999999999998766443332222222221111111111110
Q ss_pred eeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 445 LTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 445 l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
+++ .......+...|...+ -...+|++++...+|+|+
T Consensus 310 V~~-------------~v~d~LE~p~rv~k~s--L~Y~hLvvaTs~qvyiys 346 (737)
T KOG1524|consen 310 VAT-------------GVQDILEFPQRVVKFS--LGYGHLVVATSLQVYIYS 346 (737)
T ss_pred hhh-------------hHHHHhhCccceeeee--eceeEEEEEeccEEEEEe
Confidence 000 1223445555665544 456778999999999986
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=7.6e-18 Score=151.91 Aligned_cols=206 Identities=15% Similarity=0.195 Sum_probs=157.3
Q ss_pred CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010933 227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 305 (497)
Q Consensus 227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 305 (497)
..|+.+ .||.+.+.+-. ++.-. ....|.+.+.+-.|+|+| .-|+++++||.|++|.- +|-+. .+
T Consensus 76 d~~~i~s~DGkf~il~k~--~rVE~-------sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLR----St 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS--ARVER-------SISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLR----ST 140 (737)
T ss_pred ceEEEEcCCceEEEeccc--chhhh-------hhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHH----HH
Confidence 355555 99999988754 22222 267899999999999999 89999999999999984 33221 11
Q ss_pred ecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeE
Q 010933 306 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 385 (497)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (497)
+. ....+|.|++|.|+.+-++.+..+.+.|=.+.. ...+..++.|.+.+ .+
T Consensus 141 l~-------------Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGii---------------L~ 191 (737)
T KOG1524|consen 141 VV-------------QNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGLV---------------LS 191 (737)
T ss_pred Hh-------------hcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcEE---------------EE
Confidence 11 112579999999999888877778888888876 66677789999875 79
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccc
Q 010933 386 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS 465 (497)
Q Consensus 386 ~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~ 465 (497)
+.|++.+..+++||+|-+.+|||-. | .....-..|..+|++++|.|+. . ++.|+..-.+ ..
T Consensus 192 ~~W~~~s~lI~sgGED~kfKvWD~~-G-~~Lf~S~~~ey~ITSva~npd~---~-----~~v~S~nt~R---------~~ 252 (737)
T KOG1524|consen 192 LSWSTQSNIIASGGEDFRFKIWDAQ-G-ANLFTSAAEEYAITSVAFNPEK---D-----YLLWSYNTAR---------FS 252 (737)
T ss_pred eecCccccceeecCCceeEEeeccc-C-cccccCChhccceeeeeecccc---c-----eeeeeeeeee---------ec
Confidence 9999999999999999999999965 3 3447888999999999999952 2 4555433221 11
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933 466 YNLSSKLLHLAWHPTTNLIACANGNSLFFH 495 (497)
Q Consensus 466 ~~~~~~i~~l~~~p~~~~la~~~~~~~~i~ 495 (497)
....+.|..++|||||..+++|+..+..|+
T Consensus 253 ~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 253 SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 223458999999999999999998776554
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=154.37 Aligned_cols=263 Identities=13% Similarity=0.136 Sum_probs=194.4
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|+.++| .|||..|+.+..+ .+.+||+..|.+...
T Consensus 14 ci~d~af--kPDGsqL~lAAg~-rlliyD~ndG~llqt------------------------------------------ 48 (1081)
T KOG1538|consen 14 CINDIAF--KPDGTQLILAAGS-RLLVYDTSDGTLLQP------------------------------------------ 48 (1081)
T ss_pred chheeEE--CCCCceEEEecCC-EEEEEeCCCcccccc------------------------------------------
Confidence 4999999 7899988887765 588999988874432
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
+++|.+.|++++|+.+|+.+++| .|..|.+|+..-.+ .++ -.|.+.|.|+
T Consensus 49 -------------------LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~Lk---------YSH~D~IQCM 99 (1081)
T KOG1538|consen 49 -------------------LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILK---------YSHNDAIQCM 99 (1081)
T ss_pred -------------------cccccceEEEEEEccCCceeccCCCceeEEEecccccc-eee---------eccCCeeeEe
Confidence 28999999999999999999999 99999999977333 333 2599999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~l 348 (497)
.|+|-. +.|++++-. ..-+|........ +.-. ...+.+++|..||++++.| .+|+|.+
T Consensus 100 sFNP~~-h~LasCsLs-dFglWS~~qK~V~----K~ks---------------s~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 100 SFNPIT-HQLASCSLS-DFGLWSPEQKSVS----KHKS---------------SSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ecCchH-HHhhhcchh-hccccChhhhhHH----hhhh---------------heeEEEeeecCCCcEEEEeccCceEEe
Confidence 999998 889988765 3568887664332 1111 2568999999999999999 5699999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCCcceEEEeccC
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-----LHFATGSYSNLLRIFSHGVGSAGGITVEAGK 423 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 423 (497)
-+.. +++...+....+.. +. |++++|+|.. ..+++.....++.+|.+... .+.. -+.-.
T Consensus 159 RNk~--gEek~~I~Rpgg~N---------sp---iwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk-~r~L~ 222 (1081)
T KOG1538|consen 159 RNKN--GEEKVKIERPGGSN---------SP---IWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGK-DRALN 222 (1081)
T ss_pred ecCC--CCcceEEeCCCCCC---------CC---ceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecc-cccCC
Confidence 8764 44444444322211 12 2799999963 47888999999999988643 2211 11111
Q ss_pred cceeeeEeecCCCcccccccceeEeeccCc-eec-CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933 424 NENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 491 (497)
Q Consensus 424 ~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~ 491 (497)
-...++..-+ +|.+ +..|+.|+. +++ ..+-...+.-++...|..++.+|++..+++|+.|+
T Consensus 223 FdP~CisYf~--NGEy-----~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 223 FDPCCISYFT--NGEY-----ILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred CCchhheecc--CCcE-----EEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 1112444444 7777 888999998 999 55556677778899999999999999999999655
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.8e-17 Score=136.62 Aligned_cols=296 Identities=13% Similarity=0.140 Sum_probs=190.9
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccc-cCccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~ 108 (497)
.|.+.|+|+.|-.++. |.+|...|.|.+|++++.+. ...+++ |.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~-----------------------~~~~r~~g~----------- 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD-----------------------LPLIRLFGR----------- 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCcc-----------------------chhhhhhcc-----------
Confidence 4889999999998875 88999999999999998643 444553 44
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCC-ccccccccccccCcccc-CCCCCcc---cccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP-FVSSENTLLAEKNFMNE-HNPPSFA---HGYH 183 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~ 183 (497)
..|+.+.-. | +..+.+-+.|..+.+|++..+....+.....+. ..|.++........-.. ....... ..-.
T Consensus 57 -~~it~lq~~--p-~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 57 -LFITNLQSI--P-NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred -ceeeceeec--C-CcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 668888874 3 367899999999999999876544332211111 11111111111100000 0000000 0000
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCC--EEEEE-cCCeEEEEeCccCceeeEEeecCC--C
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE--TFVSA-DDLRINLWNLEISDQCFNIVDMKP--S 257 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~--~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~ 257 (497)
++. .-.+++-+-. ..+..+.+.+..+.. .+. ++++| ++|.+.+||+..+.+.++.-..-+ .
T Consensus 133 ~g~--~tqv~i~dd~-----------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~ 199 (323)
T KOG0322|consen 133 GGD--TTQVQIADDS-----------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES 199 (323)
T ss_pred cCc--cceeEccCch-----------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccccc
Confidence 000 0011111111 124455676666532 333 44568 999999999995433322110000 1
Q ss_pred ccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC--cccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933 258 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 335 (497)
Q Consensus 258 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 335 (497)
....|..++.++.+.+.- ..=++++.+..+..|.+... .+.......++. ..+..+.+-||+
T Consensus 200 ~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn---------------pGv~gvrIRpD~ 263 (323)
T KOG0322|consen 200 PNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN---------------PGVSGVRIRPDG 263 (323)
T ss_pred chhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEecC---------------CCccceEEccCC
Confidence 245689999999999865 56678888889999988643 221111122222 568999999999
Q ss_pred CEEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 336 QHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 336 ~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
+.+|+++ |++||+|+.++ ..++..++.|...+ .+++|+|+...+|+++.|++|.+|++
T Consensus 264 KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCceEEeeec
Confidence 9999975 69999999997 89999999999765 69999999999999999999999986
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.4e-17 Score=145.39 Aligned_cols=281 Identities=18% Similarity=0.165 Sum_probs=181.0
Q ss_pred cceeEEEEEecCCCC-EEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 110 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.+|.++.|. ++.. .+++|+.|..|++|.+..+....
T Consensus 14 ~pv~s~dfq--~n~~~~laT~G~D~~iriW~v~r~~~~~----------------------------------------- 50 (434)
T KOG1009|consen 14 EPVYSVDFQ--KNSLNKLATAGGDKDIRIWKVNRSEPGG----------------------------------------- 50 (434)
T ss_pred CceEEEEec--cCcccceecccCccceeeeeeeecCCCC-----------------------------------------
Confidence 679999995 4444 89999999999999987655211
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC------------ceeeEEeecC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS------------DQCFNIVDMK 255 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~------------~~~~~~~~~~ 255 (497)
+... .+.+.. +..|...|+.+.|+|+|+.|++| ++|.|.+|-.... ++...+
T Consensus 51 -~~~~---------V~y~s~-Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v---- 115 (434)
T KOG1009|consen 51 -GDMK---------VEYLSS-LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV---- 115 (434)
T ss_pred -Ccee---------EEEeec-ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEE----
Confidence 0000 011222 37999999999999999999999 9999999976510 000110
Q ss_pred CCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933 256 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 335 (497)
Q Consensus 256 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 335 (497)
...+.+|...|+.++|+|++ .++++++.|..+++||+..|... ..+. +|...+..++|.|-+
T Consensus 116 ~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~~~~-------------dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 116 KKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----AILD-------------DHEHYVQGVAWDPLN 177 (434)
T ss_pred EEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeE----eecc-------------ccccccceeecchhh
Confidence 02367899999999999999 99999999999999999998765 3433 466889999999999
Q ss_pred CEEEEE-ecCeEEEEecCCCCceeeeee-----e---cccccccccccCCCCCc-cceeEEEEcCCCCEEEEEeC----C
Q 010933 336 QHLLSR-DYMNLKLWDIRMDSTPVATFK-----I---HEHLRPKLCDLYNNDSI-FDKFECSVSGDGLHFATGSY----S 401 (497)
Q Consensus 336 ~~l~~~-~~~~i~lwd~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~s~~~----d 401 (497)
+++++- .|...+.+++.. .+.+.... . +... ...-.++.++.. ...+.++|+|||.+|++... +
T Consensus 178 qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e-~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g 255 (434)
T KOG1009|consen 178 QYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNERE-GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG 255 (434)
T ss_pred hhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCC-cceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence 999984 456566666653 22222111 0 0000 000012222221 11267999999999986653 2
Q ss_pred C-----cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEE
Q 010933 402 N-----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLA 476 (497)
Q Consensus 402 g-----~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~ 476 (497)
+ ..++|+-..-......+..-..+...+.++|- ..++......= -+-
T Consensus 256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV---------------------------y~elrp~~~~~-~~~ 307 (434)
T KOG1009|consen 256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV---------------------------YYELRPLSSEK-FLF 307 (434)
T ss_pred CceeeceeEeeccccccCceeecCCCCcceEEEEeeee---------------------------EEEeccccccc-ccc
Confidence 2 23556555444444555555666666666652 01111111100 023
Q ss_pred EecCCCEEEEEeCCceEEEe
Q 010933 477 WHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 477 ~~p~~~~la~~~~~~~~i~~ 496 (497)
--|.+-.+|+++.+.+|||.
T Consensus 308 ~lpyrlvfaiAt~~svyvyd 327 (434)
T KOG1009|consen 308 VLPYRLVFAIATKNSVYVYD 327 (434)
T ss_pred ccccceEEEEeecceEEEec
Confidence 35677888999999999985
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.6e-17 Score=144.45 Aligned_cols=212 Identities=13% Similarity=0.138 Sum_probs=157.5
Q ss_pred ccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 29 ~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
.+|+++|..++|+| +.+.||+|++|.+|.||++-.+-+ ..+-.+++..|.||.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l----------------~~~ltepvv~L~gH~---------- 131 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL----------------TRDLTEPVVELYGHQ---------- 131 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCccc----------------ccCcccceEEEeecc----------
Confidence 37999999999999 667899999999999999865432 122346688899999
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
.+|--++|+|.. ...|++++.|.+|.+|++.+++....
T Consensus 132 --rrVg~V~wHPtA-~NVLlsag~Dn~v~iWnv~tgeali~--------------------------------------- 169 (472)
T KOG0303|consen 132 --RRVGLVQWHPTA-PNVLLSAGSDNTVSIWNVGTGEALIT--------------------------------------- 169 (472)
T ss_pred --eeEEEEeecccc-hhhHhhccCCceEEEEeccCCceeee---------------------------------------
Confidence 899999998733 45899999999999999998873321
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC-CC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT-EV 265 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~ 265 (497)
-.|...|++++|+.+|.+|++. .|+.|++||.+ .+..+.. ..+|. ..
T Consensus 170 -----------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr-~~~~v~e-------~~~heG~k 218 (472)
T KOG0303|consen 170 -----------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR-RGTVVSE-------GVAHEGAK 218 (472)
T ss_pred -----------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCC-CCcEeee-------cccccCCC
Confidence 2499999999999999999998 99999999999 4555443 23454 33
Q ss_pred eEEEEEeCCCCcEEEEEe---CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-E
Q 010933 266 ITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-R 341 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~ 341 (497)
-..+.|-.+| .++.+|- .+..+-+||...-+.... ...+.. .+.|.---|.+|.+.+.. |
T Consensus 219 ~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~-~~elDt--------------SnGvl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 219 PARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIA-LQELDT--------------SNGVLLPFYDPDTSIVYLCG 282 (472)
T ss_pred cceeEEeccC-ceeeeccccccccceeccCcccccCcce-eEEecc--------------CCceEEeeecCCCCEEEEEe
Confidence 4566788888 6554443 378899999876433210 011221 245666667888877765 4
Q ss_pred -ecCeEEEEecCCCC
Q 010933 342 -DYMNLKLWDIRMDS 355 (497)
Q Consensus 342 -~~~~i~lwd~~~~~ 355 (497)
+|+.||-|.+..+.
T Consensus 283 KGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 283 KGDSSIRYFEITNEP 297 (472)
T ss_pred cCCcceEEEEecCCC
Confidence 57999999998643
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=1.1e-15 Score=132.24 Aligned_cols=240 Identities=15% Similarity=0.224 Sum_probs=167.4
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...++.+.|+.+...|..|+.|| .++|+.+...+ -.|... -...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---------------------------~~~~~~--------~~~~ 48 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---------------------------CFSKDT--------EGVS 48 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---------------------------hhcccC--------CCeE
Confidence 35677888999999999999998 68888765321 111100 0023
Q ss_pred eeEEEEEecCCCCEEEEEeCC--ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 112 INRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
|--+-| + ..+++..+.+ +.+++.++..+..+
T Consensus 49 IvEmLF--S--SSLvaiV~~~qpr~Lkv~~~Kk~~~I------------------------------------------- 81 (391)
T KOG2110|consen 49 IVEMLF--S--SSLVAIVSIKQPRKLKVVHFKKKTTI------------------------------------------- 81 (391)
T ss_pred EEEeec--c--cceeEEEecCCCceEEEEEcccCceE-------------------------------------------
Confidence 444455 3 3477777654 34777776654422
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
|...| ...|.++.++.+ .|+.+-...|+|||++ .-+.+++++ +.+.+...+.++
T Consensus 82 ---------------Ce~~f----pt~IL~VrmNr~--RLvV~Lee~IyIydI~-~MklLhTI~----t~~~n~~gl~Al 135 (391)
T KOG2110|consen 82 ---------------CEIFF----PTSILAVRMNRK--RLVVCLEESIYIYDIK-DMKLLHTIE----TTPPNPKGLCAL 135 (391)
T ss_pred ---------------EEEec----CCceEEEEEccc--eEEEEEcccEEEEecc-cceeehhhh----ccCCCccceEee
Confidence 22222 457888888754 6777733339999999 555555542 233455667777
Q ss_pred EEeCCCCcEEEEEeC--CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--Ce
Q 010933 270 EFHPIYCNLLAYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MN 345 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~ 345 (497)
++++.+ .++|.-+. .|.|.+||+.+-+.. ..+ ..|++.+.+++|+++|.+||++++ -.
T Consensus 136 S~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~v----~~I-------------~aH~~~lAalafs~~G~llATASeKGTV 197 (391)
T KOG2110|consen 136 SPNNAN-CYLAYPGSTTSGDVVLFDTINLQPV----NTI-------------NAHKGPLAALAFSPDGTLLATASEKGTV 197 (391)
T ss_pred ccCCCC-ceEEecCCCCCceEEEEEcccceee----eEE-------------EecCCceeEEEECCCCCEEEEeccCceE
Confidence 777776 67776543 689999999875433 333 457899999999999999999987 46
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
|||+.+.. ++.+.+++.....+ . |.+++|+|++++|++.|..++|+||.++..
T Consensus 198 IRVf~v~~-G~kl~eFRRG~~~~----------~---IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 198 IRVFSVPE-GQKLYEFRRGTYPV----------S---IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEEEcCC-ccEeeeeeCCceee----------E---EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 79999986 88888887554433 2 369999999999999999999999999865
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=1.2e-16 Score=152.63 Aligned_cols=282 Identities=15% Similarity=0.189 Sum_probs=170.5
Q ss_pred ccchhhhhcCCCCCCCcccCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccc
Q 010933 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYK 90 (497)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (497)
+.|.+..- ..+.-.+.-...|+|+.|+| +..+||.|+.+|.|.+||+..+... +....-
T Consensus 225 ~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~ls 284 (555)
T KOG1587|consen 225 LVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSGLS 284 (555)
T ss_pred EEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcccc
Confidence 34655442 22323334468999999999 6678899999999999999876430 000111
Q ss_pred ccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccccCc
Q 010933 91 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNF 169 (497)
Q Consensus 91 ~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 169 (497)
.....|. .+++.+.|..++.+.-|++++.||.|..|+++.-.. .......... ..-.........
T Consensus 285 ~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~--~~~~~~~~~~~~ 350 (555)
T KOG1587|consen 285 ALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK--HKGQQSSKAVGA 350 (555)
T ss_pred cccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc--ccccccccccce
Confidence 1123455 999999998766667799999999999998764321 1000000000 000000000001
Q ss_pred cccCCCCCc-ccccccccccCcceEEEeecCCcc-c----eeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 010933 170 MNEHNPPSF-AHGYHLEWTENMATKIANVGNSVH-A----RCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 242 (497)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~ 242 (497)
....+.+.. ..+..|. ..|.|.--....... . +.+..+ ..|.+.|.++.++|-+..++.. .|.+++||..
T Consensus 351 t~~~F~~~~p~~FiVGT--e~G~v~~~~r~g~~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~ 427 (555)
T KOG1587|consen 351 TSLKFEPTDPNHFIVGT--EEGKVYKGCRKGYTPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSE 427 (555)
T ss_pred eeEeeccCCCceEEEEc--CCcEEEEEeccCCcccccccccccccc-cccCcceEeeecCCCccceeeeeccceeEeccc
Confidence 111111111 1111111 123332211111111 1 223233 6789999999999977666655 8999999987
Q ss_pred ccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933 243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 322 (497)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (497)
.....++- .+..+...+++++|+|..+..|+++..||.|.+||+........ ... ..+
T Consensus 428 ~~~~~Pl~-------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv--~s~-------------~~~ 485 (555)
T KOG1587|consen 428 DVIASPLL-------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV--LSQ-------------KVC 485 (555)
T ss_pred cCCCCcch-------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc--ccc-------------ccc
Confidence 62222221 15566777999999999988999999999999999986532211 100 111
Q ss_pred cccccEEEEeeCCCEEEEEec-CeEEEEecC
Q 010933 323 IASISDIKFANDGQHLLSRDY-MNLKLWDIR 352 (497)
Q Consensus 323 ~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~ 352 (497)
....+.+.|+++|+.|++|++ |.+.+|++.
T Consensus 486 ~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 486 SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 256788889999999999987 999999995
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=2.7e-15 Score=140.15 Aligned_cols=267 Identities=13% Similarity=0.119 Sum_probs=163.3
Q ss_pred CcccCCcceEEEEEcCCCCEEEEee-cCCeEEEEEecC-CccccchhhhhhhcccCCCCCCcccccccccccCccccccc
Q 010933 27 EELQDVDIVSAIEFDKTGDYLAVGD-RGGRVILFETVG-GKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 104 (497)
Q Consensus 27 ~~~~h~~~I~~i~~sp~g~~lasg~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 104 (497)
..+.+.+....++++|+|++|++++ .++.|.+|+++. +.. ....... ..
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l---------------------~~~~~~~-~~------- 79 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL---------------------TFAAESP-LP------- 79 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---------------------EEeeeec-CC-------
Confidence 3344556778899999999987765 578899999863 221 1111111 11
Q ss_pred ccccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 105 SLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 105 ~~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
+....++| +|+++++++++ .++.|.+|+++. +....
T Consensus 80 -----~~p~~i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~----------------------------------- 117 (330)
T PRK11028 80 -----GSPTHIST--DHQGRFLFSASYNANCVSVSPLDKDGIPVA----------------------------------- 117 (330)
T ss_pred -----CCceEEEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCC-----------------------------------
Confidence 33567888 68999888886 488999999863 22110
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
.+.. ..+......++++|+++.++++ .++.|.+||++..+...... .......
T Consensus 118 ----------------------~~~~--~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~~~~~ 172 (330)
T PRK11028 118 ----------------------PIQI--IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAEVTTV 172 (330)
T ss_pred ----------------------ceee--ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCceecC
Confidence 0000 0112335668899999988654 78999999998433221100 0000011
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
.......++|+|++ ++++++.. ++.|.+||+.......+....+...... +. +......+.++|+|++++
T Consensus 173 -~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~------~~-~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 173 -EGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD------FS-DTRWAADIHITPDGRHLY 243 (330)
T ss_pred -CCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc------CC-CCccceeEEECCCCCEEE
Confidence 12346789999999 88877766 8999999997421110111111110000 00 012234688999999999
Q ss_pred EEe--cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 010933 340 SRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV 411 (497)
Q Consensus 340 ~~~--~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~ 411 (497)
++. ++.|.+|++..++..+. +..+..... . .+.+.++|||++|+++.. ++.|.+|+++.
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~---------~---p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLS-FEGHQPTET---------Q---PRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEE-EeEEEeccc---------c---CCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 873 38999999975333222 222211000 0 147999999999998776 89999998853
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=6.6e-16 Score=147.49 Aligned_cols=223 Identities=13% Similarity=0.143 Sum_probs=151.5
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.++.|+| -+..+++.|..+|.|.+||+..+......
T Consensus 243 s~v~~~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s---------------------------------------- 281 (555)
T KOG1587|consen 243 SEVTCLKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPS---------------------------------------- 281 (555)
T ss_pred CceeEEEecc-CCcceEEeeccCceEEEEEccCCCCCCCc----------------------------------------
Confidence 6799999986 44567888889999999999877632211
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCCCc----cCCC
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN----MDDL 262 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~ 262 (497)
++......|..+++.+.|..+. .-++++ .||.|..|+++.-............. -..-
T Consensus 282 ---------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~ 346 (555)
T KOG1587|consen 282 ---------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSK 346 (555)
T ss_pred ---------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccc
Confidence 1111125889999999996533 447777 99999999887333222221111000 0022
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR 341 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~ 341 (497)
...+++++|.+..+..|++|+.+|.|.--+-...+.-.. ..++. ...+..|.++|+++.++|-+. .++++
T Consensus 347 ~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--~~~~~-------~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--VSYKG-------HSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--ccccc-------cccccccCcceEeeecCCCccceeeee
Confidence 356789999998888999999999988744332221100 11122 223456789999999999775 44455
Q ss_pred ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCC
Q 010933 342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~ 412 (497)
.|..++||.-.....++..+..+...+ ++++|||... .++++..||.|.+||+...
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v---------------~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYV---------------TDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ccceeEeccccCCCCcchhhhhcccee---------------eeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 689999999873367777776665533 7999999764 6667788999999999865
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=8.2e-17 Score=154.90 Aligned_cols=213 Identities=14% Similarity=0.156 Sum_probs=144.1
Q ss_pred cceeEEEEEecCCCCEEEEEeCC---ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+.+++| +|||+.|+.++.+ ..|.+||+.+++...+.
T Consensus 204 ~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~------------------------------------- 244 (429)
T PRK01742 204 QPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA------------------------------------- 244 (429)
T ss_pred CccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-------------------------------------
Confidence 77999999 7899999988643 46999998876532211
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEE--eCccCceeeEEeecCCCccCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLW--NLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~ 262 (497)
.+ .+| ...++|+|||+.|+.+ .+|.+.|| |+. ++.... +..+
T Consensus 245 ---------------------~~-~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~ 290 (429)
T PRK01742 245 ---------------------SF-RGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-GGTPSQ--------LTSG 290 (429)
T ss_pred ---------------------cC-CCc---cCceeECCCCCEEEEEEecCCcEEEEEEECC-CCCeEe--------eccC
Confidence 01 233 2357999999988875 57766665 554 333322 3445
Q ss_pred CCCeEEEEEeCCCCcEEEEEe-CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
...+....|+|+| +.|+.++ .++..+||++....... ..+.. .. ....|+|+|++|+..
T Consensus 291 ~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~--------------~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 291 AGNNTEPSWSPDG-QSILFTSDRSGSPQVYRMSASGGGA---SLVGG--------------RG--YSAQISADGKTLVMI 350 (429)
T ss_pred CCCcCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCe---EEecC--------------CC--CCccCCCCCCEEEEE
Confidence 6677889999999 7666554 57888888875432110 11111 12 457899999999887
Q ss_pred ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC--CCCcceEEE
Q 010933 342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG--VGSAGGITV 419 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~--~~~~~~~~~ 419 (497)
....+.+||+.+ ++.......... ..+.|+|||++|+.++.++.+.+|.+. ++ .....+
T Consensus 351 ~~~~i~~~Dl~~-g~~~~lt~~~~~-----------------~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l 411 (429)
T PRK01742 351 NGDNVVKQDLTS-GSTEVLSSTFLD-----------------ESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARL 411 (429)
T ss_pred cCCCEEEEECCC-CCeEEecCCCCC-----------------CCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEc
Confidence 555677799976 543322222111 268899999999999999988888763 34 345778
Q ss_pred eccCcceeeeEeecC
Q 010933 420 EAGKNENRKPILQAA 434 (497)
Q Consensus 420 ~~~~~~v~~~~~~~~ 434 (497)
.+|.+.+..++|+|.
T Consensus 412 ~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 412 PGSDGQVKFPAWSPY 426 (429)
T ss_pred cCCCCCCCCcccCCC
Confidence 888888888899873
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2e-17 Score=147.66 Aligned_cols=305 Identities=16% Similarity=0.186 Sum_probs=216.0
Q ss_pred cccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
.-.|.+.|+.+.|+..|..|++|+.|..|.+||+..+.. .+.-..||.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----------------------~l~f~SGH~---------- 185 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----------------------KLSFESGHC---------- 185 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCc----------------------ccccccccc----------
Confidence 335999999999999999999999999999999988643 123345788
Q ss_pred cccceeEEEEEecCCCCEEEEEeCCccEEEeecCch-heeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..|..-.|.|..+.+-+++++.||.+++=.+... .+...
T Consensus 186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t-------------------------------------- 225 (559)
T KOG1334|consen 186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT-------------------------------------- 225 (559)
T ss_pred --cchhhhhccCCCCCcCceeccccCceeeeeeccccceecc--------------------------------------
Confidence 7788889998888889999999999998765432 21111
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
+. +..|.++|..++.-|+. ..|.++ .|+.+.-+|++......... . ...+..
T Consensus 226 --------------------~r-l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-c----r~~~~~ 279 (559)
T KOG1334|consen 226 --------------------KR-LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-C----READEK 279 (559)
T ss_pred --------------------ee-cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-e----eccCCc
Confidence 11 26888999999998854 455666 99999999998433222221 1 122223
Q ss_pred ---CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc--ccceecccccccCCccccccccccccEEEEeeCC-CEE
Q 010933 265 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH--SARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHL 338 (497)
Q Consensus 265 ---~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l 338 (497)
....++.+|...+.+++++.|..+++||.+.-..... .++.|..|.- .......|++++|+.++ .+|
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl-------~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL-------VEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc-------cccCcccceeEEecCCcccee
Confidence 5678899998867999999999999999986322100 0011111000 01113579999999665 566
Q ss_pred EEEecCeEEEEecCCC-C----------ceeee-eeecccccccccccCCCCCccceeEEE-EcCCCCEEEEEeCCCcEE
Q 010933 339 LSRDYMNLKLWDIRMD-S----------TPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECS-VSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 339 ~~~~~~~i~lwd~~~~-~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l~s~~~dg~i~ 405 (497)
++-.|-.|+++.-... + ..+.. +++|.... .| -.+- |-|...|+++|+.-|.|.
T Consensus 353 aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~----------TV---KgVNFfGPrsEyVvSGSDCGhIF 419 (559)
T KOG1334|consen 353 ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR----------TV---KGVNFFGPRSEYVVSGSDCGHIF 419 (559)
T ss_pred eeecccceEEeccccccCCCCCCCcchhhccchhhccccccc----------cc---ceeeeccCccceEEecCccceEE
Confidence 6657788999954321 1 22333 78887643 12 2444 567889999999999999
Q ss_pred EEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC
Q 010933 406 IFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 458 (497)
Q Consensus 406 vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~ 458 (497)
||+-.++ .+...+++-..-|+++.-.|- +++||+.|-|.- +||.+
T Consensus 420 iW~K~t~-eii~~MegDr~VVNCLEpHP~-------~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 420 IWDKKTG-EIIRFMEGDRHVVNCLEPHPH-------LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred EEecchh-HHHHHhhcccceEeccCCCCC-------CchhhccCCccceeeecC
Confidence 9998887 444788888888888887773 677999999988 99944
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=2.1e-14 Score=139.65 Aligned_cols=316 Identities=23% Similarity=0.366 Sum_probs=219.8
Q ss_pred cceEEEEE-cCCCC-EEEEeec-CCeEEEEEecC-CccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 33 DIVSAIEF-DKTGD-YLAVGDR-GGRVILFETVG-GKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 33 ~~I~~i~~-sp~g~-~lasg~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
..+..+.+ ++++. +++..+. |+.+.+|+... . .....+..|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------------------~~~~~~~~~~----------- 155 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG-----------------------KLIRTLEGHS----------- 155 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCC-----------------------eEEEEEecCc-----------
Confidence 36777777 88887 5555444 89999999976 3 3356678888
Q ss_pred ccceeEEEEEecCCCCEEEEEeC-CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
..|..++| ++++..+++++. |+.+++|++..+...
T Consensus 156 -~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 191 (466)
T COG2319 156 -ESVTSLAF--SPDGKLLASGSSLDGTIKLWDLRTGKPL----------------------------------------- 191 (466)
T ss_pred -ccEEEEEE--CCCCCEEEecCCCCCceEEEEcCCCceE-----------------------------------------
Confidence 88999999 678878888885 999999999873322
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
..+ .+|...+.+++|+|++. .++++ .|+.|++||.. .+..... .+..|...
T Consensus 192 -------------------~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~~~~~~~------~~~~~~~~ 244 (466)
T COG2319 192 -------------------STL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRS------TLSGHSDS 244 (466)
T ss_pred -------------------Eee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-CCcEEee------ecCCCCcc
Confidence 222 56899999999999998 66665 99999999887 4444441 15667766
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cC
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM 344 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 344 (497)
. ...|+|++ ..+++++.|+.+++||++..... ...+ ..|...+.++.|+|++..+++++ ++
T Consensus 245 ~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~d~ 306 (466)
T COG2319 245 V-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTL-------------SGHSSSVLSVAFSPDGKLLASGSSDG 306 (466)
T ss_pred e-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEE-------------ecCCccEEEEEECCCCCEEEEeeCCC
Confidence 4 33899998 89999999999999999876431 0111 12357899999999888888764 47
Q ss_pred eEEEEecCCCCceeeeee--ecccccccccccCCCCCccceeEEEEcCCCCEEEEE-eCCCcEEEEEcCCCCcceEEEec
Q 010933 345 NLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG-SYSNLLRIFSHGVGSAGGITVEA 421 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~ 421 (497)
.+.+||... ........ .|...+ ..+.|.+++..++.+ ..|+.+.+|++.... . .....
T Consensus 307 ~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~-~~~~~ 368 (466)
T COG2319 307 TVRLWDLET-GKLLSSLTLKGHEGPV---------------SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-P-LKTLE 368 (466)
T ss_pred cEEEEEcCC-CceEEEeeecccCCce---------------EEEEECCCCCEEEEeecCCCcEEeeecCCCc-e-eEEec
Confidence 899999876 55444444 454422 467774343556555 688999999998875 2 22222
Q ss_pred cCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccc-cccC-CCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 422 GKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELS-YNLS-SKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 422 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~-~~~~-~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
....+..+.+.+ . ... ...+..++. .+|......... .... ..+....+.+++..++.++ +..+.+|.
T Consensus 369 ~~~~~~~~~~~~-~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 369 GHSNVLSVSFSP-D-GRV-----VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred CCceEEEEEECC-C-CCE-----EEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 222266777766 4 333 334666677 888333222221 1122 7899999999999998866 55577775
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=5.8e-17 Score=149.13 Aligned_cols=262 Identities=16% Similarity=0.220 Sum_probs=175.3
Q ss_pred EcCCCCEEEE--eecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEE
Q 010933 40 FDKTGDYLAV--GDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 117 (497)
Q Consensus 40 ~sp~g~~las--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~ 117 (497)
|..+..++|+ .+..|.|-||++..... .|+...-..+.+ ..|+++.|
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGr-----------------LPDgv~p~l~Ng--------------t~vtDl~W 635 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGR-----------------LPDGVMPGLFNG--------------TLVTDLHW 635 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCC-----------------CCcccccccccC--------------ceeeeccc
Confidence 4445556654 34568999999875321 333322222222 45999999
Q ss_pred EecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEee
Q 010933 118 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV 197 (497)
Q Consensus 118 ~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (497)
.| -|.+.|+.++.||.|++|.+..+......
T Consensus 636 dP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~------------------------------------------------ 666 (1012)
T KOG1445|consen 636 DP-FDDERLAVATDDGQINLWRLTANGLPENE------------------------------------------------ 666 (1012)
T ss_pred CC-CChHHeeecccCceEEEEEeccCCCCccc------------------------------------------------
Confidence 75 46678999999999999999876533221
Q ss_pred cCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC
Q 010933 198 GNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 275 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 275 (497)
..+...+ ..|...|+++.|+| -...|+++ .|-+|++||+........ +.+|.+.|..++|+|+|
T Consensus 667 -----~tPe~~l-t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~--------l~gHtdqIf~~AWSpdG 732 (1012)
T KOG1445|consen 667 -----MTPEKIL-TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR--------LVGHTDQIFGIAWSPDG 732 (1012)
T ss_pred -----CCcceee-ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe--------eccCcCceeEEEECCCC
Confidence 1233333 79999999999999 45577777 999999999994433322 78999999999999999
Q ss_pred CcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-----ecCeEEEEe
Q 010933 276 CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-----DYMNLKLWD 350 (497)
Q Consensus 276 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-----~~~~i~lwd 350 (497)
+.+|+.+.||+|++|+.++++. .+.++ .... ...-..+.|--+|+++++. +...|.+||
T Consensus 733 -r~~AtVcKDg~~rVy~Prs~e~-----pv~Eg-~gpv---------gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 733 -RRIATVCKDGTLRVYEPRSREQ-----PVYEG-KGPV---------GTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred -cceeeeecCceEEEeCCCCCCC-----ccccC-CCCc---------cCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 9999999999999999998764 23333 1000 1234567888899998874 237899999
Q ss_pred cCCCC-ceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 351 IRMDS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 351 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
.++-. .++.+........ + .--.+.+|.. ++++|-.|..|++|.+-........+..|..+
T Consensus 797 Aq~l~~~pl~t~~lDvaps-----------~---LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp 859 (1012)
T KOG1445|consen 797 AQTLDLRPLYTQVLDVAPS-----------P---LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSP 859 (1012)
T ss_pred hhhccCCcceeeeecccCc-----------c---ccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCC
Confidence 87521 3333222111110 0 1234555655 45678889999999987665544555544443
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=3.9e-15 Score=139.01 Aligned_cols=238 Identities=9% Similarity=-0.014 Sum_probs=147.7
Q ss_pred CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEE
Q 010933 215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLV 291 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~ 291 (497)
.....++++|+++.|+++ .++.|.+|+++..+.. .... .. ........++++|++ ++|++++. ++.|.+|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~----~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~ 107 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA----ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVS 107 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee----ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEE
Confidence 446678999999988765 6899999999733322 2110 01 122346789999999 77777654 8999999
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceee------eeee
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA------TFKI 363 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~------~~~~ 363 (497)
++.+..........+.. ......++++|+|+++++++ ++.|.+||+...+.+.. ....
T Consensus 108 ~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEG--------------LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred EECCCCCCCCceeeccC--------------CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC
Confidence 99743222111111111 13467788999999987764 39999999975333211 1111
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCC--Cc-ceEEEeccC------cceeeeEeec
Q 010933 364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG--SA-GGITVEAGK------NENRKPILQA 433 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~--~~-~~~~~~~~~------~~v~~~~~~~ 433 (497)
...+ ..+.|+|+|++++++.. ++.|.+|+++.. .. ....+..+. .....+.++|
T Consensus 174 g~~p----------------~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 174 GAGP----------------RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CCCC----------------ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 1111 47999999999988877 899999999742 21 122232211 1122466777
Q ss_pred CCCcccccccceeEeec-cCc-eecCC--CCCccccccc---CCCeEEEEEecCCCEEEEEe--CCceEEEe
Q 010933 434 APRARRSSLSNLTRGLY-RQA-HENSS--SGHHELSYNL---SSKLLHLAWHPTTNLIACAN--GNSLFFHY 496 (497)
Q Consensus 434 ~~~~~~~~~~~l~~~~~-d~~-~iw~~--~~~~~~~~~~---~~~i~~l~~~p~~~~la~~~--~~~~~i~~ 496 (497)
++++ ++++.. ++. .+|.. .+......++ ......++++|+|++|+++. ++.+.+|.
T Consensus 238 --dg~~-----lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 238 --DGRH-----LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred --CCCE-----EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 6666 666644 344 77722 2211112221 12456899999999999877 56688874
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=2.1e-15 Score=149.04 Aligned_cols=295 Identities=17% Similarity=0.233 Sum_probs=180.9
Q ss_pred ccccccchhhhhcCCCCCCCcccCCcceEEEEEcCCC-CEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCc
Q 010933 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPE 86 (497)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g-~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (497)
.++.+.|+..-..-. ....|...|..++.++.. .++++|+.||+|++|+...-... + ..
T Consensus 1028 ~~p~~gW~p~G~lVA----hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------~-------~s 1087 (1431)
T KOG1240|consen 1028 GSPPPGWNPRGILVA----HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------G-------GS 1087 (1431)
T ss_pred CCCCCCCCccceEee----hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------c-------ce
Confidence 345556665433211 233588889999888754 99999999999999998653210 0 01
Q ss_pred ccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933 87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 166 (497)
Q Consensus 87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
++...++..-. .++.++..+ +.+..+|.++.||.|++.+++.........
T Consensus 1088 ~rS~ltys~~~------------sr~~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~---------------- 1137 (1431)
T KOG1240|consen 1088 ARSELTYSPEG------------SRVEKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVA---------------- 1137 (1431)
T ss_pred eeeeEEEeccC------------CceEEEEec--cCCCeEEEEcCCCeEEEEEcccccccccee----------------
Confidence 11111221112 778888886 567799999999999999987632111100
Q ss_pred cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCC-EEEEE-cCCeEEEEeCc
Q 010933 167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCE-TFVSA-DDLRINLWNLE 243 (497)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-~l~~~-~d~~i~iwd~~ 243 (497)
...++-+. ......|..-++.. .+. .++.+ ..+.|..||++
T Consensus 1138 -----------------------~~~ri~n~-------------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1138 -----------------------TQVRIPNL-------------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred -----------------------eeeecccc-------------cCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 00001000 11122233334432 333 56777 99999999998
Q ss_pred cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
........ ......+.|++++.+|.+ +.+++|+..|.+.+||+|-+..+ ..|.. ++.
T Consensus 1182 ~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i----~sw~~------------P~~ 1238 (1431)
T KOG1240|consen 1182 MRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI----LSWEH------------PAR 1238 (1431)
T ss_pred hhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee----ecccC------------ccc
Confidence 43322211 134456889999999999 89999999999999999977554 33332 223
Q ss_pred ccccEEEEeeCC---CEEEEE-e-c-CeEEEEecCCCCceeeeeeecccccccccc-cCC-----CCCccceeEEEEcCC
Q 010933 324 ASISDIKFANDG---QHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD-LYN-----NDSIFDKFECSVSGD 391 (497)
Q Consensus 324 ~~i~~~~~s~~g---~~l~~~-~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~s~~ 391 (497)
.+++.+..+|-. ...+++ . . +.|.+|++.+ +.....+...... +.+.. ... ..... ....++...
T Consensus 1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~~~Ps~~~~kp~~~~-~~~~~~~~~ 1315 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSYALPSNDARKPDSLA-GISCGVCEK 1315 (1431)
T ss_pred CCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhhhcccccCCCCCccc-ceeeecccC
Confidence 678888877643 345544 3 3 8999999987 6655555444111 11110 000 11111 123445555
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCc
Q 010933 392 GLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 392 ~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
+.++.+|+.|..|+.||....+.
T Consensus 1316 ~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred CceeeecCCccceeeccCCCccc
Confidence 67899999999999999887644
No 195
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.5e-15 Score=143.91 Aligned_cols=303 Identities=15% Similarity=0.110 Sum_probs=193.7
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 115 (497)
Q Consensus 36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l 115 (497)
..-.||+|+++++... +..|.||...+++ +++.+.+|. .++.++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~-----------------------~i~~l~~~~------------a~l~s~ 63 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGE-----------------------CITSLEDHT------------APLTSV 63 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHh-----------------------hhhhccccc------------Ccccee
Confidence 3457999999887765 4689999999884 377899999 999999
Q ss_pred EEEecCCC-CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933 116 RWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 194 (497)
Q Consensus 116 ~~~~s~~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (497)
.+.|++.. .++++++.||.|++||...+.+.+.........+..+...-.+..........+...+......-.+..+-
T Consensus 64 ~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~ 143 (792)
T KOG1963|consen 64 IVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSR 143 (792)
T ss_pred eecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceee
Confidence 99875554 57789999999999999999887776655443211110000000000000000111111111100111111
Q ss_pred EeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC
Q 010933 195 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 274 (497)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 274 (497)
..+... .....-+...|.. -.++.+++.|+......+..+.+|+.....+.... ...-..|...+++.+++|+
T Consensus 144 ~~~~t~--~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~----~~~~~~Htf~~t~~~~spn 216 (792)
T KOG1963|consen 144 FVLATF--DSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSS----RDITVHHTFNITCVALSPN 216 (792)
T ss_pred eEeeec--cccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeecc----chhhhhhcccceeEEeccc
Confidence 111110 0011111133333 45678888888777778889999998843321111 0123457777999999999
Q ss_pred CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCC
Q 010933 275 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 353 (497)
Q Consensus 275 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~ 353 (497)
+ +++|++..||+|.+|.--...... .....+.-|...|++++|+++|.+|++|+- +.+.+|.+.+
T Consensus 217 ~-~~~Aa~d~dGrI~vw~d~~~~~~~-------------~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 217 E-RYLAAGDSDGRILVWRDFGSSDDS-------------ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred c-ceEEEeccCCcEEEEecccccccc-------------ccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 9 999999999999999754311111 111224456689999999999999999865 9999999987
Q ss_pred CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 354 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
++ .+-+..-... +..+.+|||+.+.+....|+.|.+-...+.
T Consensus 283 -~~-kqfLPRLgs~---------------I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 283 -GK-KQFLPRLGSP---------------ILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred -CC-cccccccCCe---------------eEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 33 2222222222 268999999999999999999999998765
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.2e-16 Score=145.40 Aligned_cols=266 Identities=16% Similarity=0.160 Sum_probs=181.3
Q ss_pred cccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccc
Q 010933 92 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 171 (497)
Q Consensus 92 ~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (497)
++..|. ..|..++|. +....|++++.|+++++|++.... ...
T Consensus 289 tl~s~~------------d~ir~l~~~--~sep~lit~sed~~lk~WnLqk~~--~s~---------------------- 330 (577)
T KOG0642|consen 289 TLRSHD------------DCIRALAFH--PSEPVLITASEDGTLKLWNLQKAK--KSA---------------------- 330 (577)
T ss_pred eeecch------------hhhhhhhcC--CCCCeEEEeccccchhhhhhcccC--Ccc----------------------
Confidence 667777 889999994 556689999999999999994311 000
Q ss_pred cCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeE
Q 010933 172 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN 250 (497)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 250 (497)
....+++.+| .+|.++|.|+++.+++..+.+| .||+|+.|++........
T Consensus 331 ----------------------------~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~d 381 (577)
T KOG0642|consen 331 ----------------------------EKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDD 381 (577)
T ss_pred ----------------------------ccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCccc
Confidence 0022455565 8999999999999999999999 999999997763322222
Q ss_pred EeecC--CCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933 251 IVDMK--PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 328 (497)
Q Consensus 251 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (497)
..+.. ...+.||.+.++.+++++.. ..|++++.||++++|+......+ +|....+ .+.-..
T Consensus 382 s~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~-----~f~~~~e-----------~g~Pls 444 (577)
T KOG0642|consen 382 SYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPC-----TFGEPKE-----------HGYPLS 444 (577)
T ss_pred ccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCcc-----ccCCccc-----------cCCcce
Confidence 11111 13578999999999999998 88999999999999998765431 1222000 123344
Q ss_pred EEEeeCCCEEEEE--ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE
Q 010933 329 IKFANDGQHLLSR--DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 406 (497)
Q Consensus 329 ~~~s~~g~~l~~~--~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v 406 (497)
+.+-.....++.+ ..+.-.++++.. ...+..+....... ...-..+..+.++|...+.+++..|+.|++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~--------~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPG--------PRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCc--------ccccCccceEEecCCCCeeEecccCCceec
Confidence 5543222112222 223333444433 22222222211110 000111247899999999999999999999
Q ss_pred EEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC
Q 010933 407 FSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS 458 (497)
Q Consensus 407 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~ 458 (497)
+|..++..+ ....+|...+.++++.+ ++-+ |++|+.|+. .+|+.
T Consensus 516 ~dn~~~~~l-~s~~a~~~svtslai~~--ng~~-----l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 516 FDNKTGKIL-HSMVAHKDSVTSLAIDP--NGPY-----LMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccccccc-hheeeccceecceeecC--CCce-----EEeecCCceeehhhc
Confidence 999998554 89999999999999999 5555 999999999 99944
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=5.2e-16 Score=129.81 Aligned_cols=207 Identities=9% Similarity=0.175 Sum_probs=154.3
Q ss_pred cCCcceEEEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
++..++++..|+. +-++|.+.+-|.+..|||++++. .+...+.+-+|+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~--------------------~~~vkTQLIAHD----------- 196 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV--------------------SGTVKTQLIAHD----------- 196 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeecc--------------------ccceeeEEEecC-----------
Confidence 5678999999997 67899999999999999999863 224456788898
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++|.. ..-+.|+++|.||.+|+||++.-+-..+
T Consensus 197 -KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTI---------------------------------------- 234 (364)
T KOG0290|consen 197 -KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTI---------------------------------------- 234 (364)
T ss_pred -cceeEEEecc-CccceEEEecCCCcEEEEEecccccceE----------------------------------------
Confidence 7799999962 3456899999999999999987552211
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
+|.- .....+..-++|++ |-+++++ + +...|.|.|++.....+. ++.+|.+.
T Consensus 235 -----IYE~-------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva-------~L~~H~a~ 289 (364)
T KOG0290|consen 235 -----IYED-------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA-------RLRNHQAS 289 (364)
T ss_pred -----EecC-------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee-------hhhcCccc
Confidence 1110 11145677788987 5566776 4 788999999996655554 38999999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcc--cccccceecccccccCCccccccccccccEEEEee-CCCEEEEEe
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL--CDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRD 342 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~ 342 (497)
|..++|.|..+..|.+++.|..+.+||+.+... .......+. -.+.|+.+.|++ .+.+++.+.
T Consensus 290 VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--------------a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 290 VNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--------------AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred ccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--------------ccceeeeeeecccCCCEEEEEe
Confidence 999999999889999999999999999986432 111111111 136799999996 467888876
Q ss_pred cCeEEE
Q 010933 343 YMNLKL 348 (497)
Q Consensus 343 ~~~i~l 348 (497)
.+.+.+
T Consensus 356 ~kklei 361 (364)
T KOG0290|consen 356 GKKLEI 361 (364)
T ss_pred cCeeeE
Confidence 655554
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.1e-16 Score=143.16 Aligned_cols=240 Identities=20% Similarity=0.266 Sum_probs=159.6
Q ss_pred CCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc-ccccCccccccc
Q 010933 26 DEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE-FQSHEPEFDYLK 104 (497)
Q Consensus 26 ~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~ 104 (497)
.+..+|++.|+|++|+.+|.+||+|+.|-.+.|||.-.-+ .+.. -.||.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-----------------------llhsI~TgHt------- 93 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-----------------------LLHSISTGHT------- 93 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-----------------------eeeeeecccc-------
Confidence 3566899999999999999999999999999999986432 2333 36898
Q ss_pred ccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 105 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 105 ~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
+.|.++.|.|..+++.+++|+.|..|+++|+...+...... +
T Consensus 94 -----aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~----------------~----------------- 135 (758)
T KOG1310|consen 94 -----ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDH----------------G----------------- 135 (758)
T ss_pred -----cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccccc----------------C-----------------
Confidence 89999999998888999999999999999998533111000 0
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC-CEEEEE-cCCeEEEEeCccCceeeEEeecCC--CccC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKP--SNMD 260 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~~~ 260 (497)
-.+.... +..|...|..++..|++ ..+-++ .||+|+-+|++..-.+-.-.+... ..+-
T Consensus 136 -----------------~~~~~~~-~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 136 -----------------MEETTRC-WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred -----------------ccchhhh-hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 0011111 26888999999999988 566677 999999999984222211100000 0011
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccC----Cccccccc-----------ccc
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG----SKSFFTEI-----------IAS 325 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----------~~~ 325 (497)
..--...++..+|..+.+||+|+.|-..++||.|...........+.. ..+. -..+-.+| ...
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~--~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~ 275 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNT--CPPKDCRCVRYFSPGHLKNSQGNLDRYITC 275 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccC--CCCcccchhheecCccccCcccccccceee
Confidence 112345789999998899999999999999996542111100011000 0000 00011111 123
Q ss_pred ccEEEEeeCCCEEEEE-ecCeEEEEecCC
Q 010933 326 ISDIKFANDGQHLLSR-DYMNLKLWDIRM 353 (497)
Q Consensus 326 i~~~~~s~~g~~l~~~-~~~~i~lwd~~~ 353 (497)
++-++|+|+|.-|+.. +...|+++|+..
T Consensus 276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 276 CTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 5678899999777665 447899999875
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.2e-16 Score=132.75 Aligned_cols=263 Identities=10% Similarity=0.083 Sum_probs=164.1
Q ss_pred CCcceEEEEEcC--CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 31 DVDIVSAIEFDK--TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 31 h~~~I~~i~~sp--~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+...++-++|.. .+..+.+|+.||.|++||+....+ .....+.+|.+
T Consensus 69 ~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e---------------------~a~~~~~~~~~---------- 117 (376)
T KOG1188|consen 69 PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE---------------------SARISWTQQSG---------- 117 (376)
T ss_pred CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh---------------------hhheeccCCCC----------
Confidence 566777888876 456789999999999999987543 12233344431
Q ss_pred ccceeEEEEEecCCCCEEEEEe----CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
.+-.+++- +.+++.++++. .|-.|.+||++..+.
T Consensus 118 -~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--------------------------------------- 155 (376)
T KOG1188|consen 118 -TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQ--------------------------------------- 155 (376)
T ss_pred -CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccc---------------------------------------
Confidence 34555554 34556666664 567788888876552
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
+++.+...|...|+++.|+| +.+.|++| .||.|.+||+......-.. ...-.|
T Consensus 156 --------------------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL-----~~viN~ 210 (376)
T KOG1188|consen 156 --------------------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL-----LHVINH 210 (376)
T ss_pred --------------------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH-----HHhhcc
Confidence 23334579999999999999 66788899 9999999999843321111 113357
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEE-E
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL-S 340 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~-~ 340 (497)
...|..+.|...+-+.|.+-+..+...+|+++.+.......+.-. .......... -..+... .+| ++...+ .
T Consensus 211 ~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~----~~~d~r~~~~-~dY~I~~-~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 211 GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV----SADDLRKEDN-CDYVINE-HSPGDKDTCALA 284 (376)
T ss_pred cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc----hhhhHHhhhh-hhheeec-ccCCCcceEEEe
Confidence 788999999987645788899999999999998764321111100 0000000000 0111111 123 233333 3
Q ss_pred Eec-CeEEEEecC--CCC---ceeeeeee-cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 341 RDY-MNLKLWDIR--MDS---TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 341 ~~~-~~i~lwd~~--~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
|++ +...++-+. ..+ +.+..+.+ |...+ +++.|...+.++.|||+||.+.+|..+..
T Consensus 285 g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV---------------R~i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 285 GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV---------------RDILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred ccccCceeEEEeeecccccccCccccccCCcHHHH---------------HHHhhhcccceeeccCCCceEEEEecCCc
Confidence 454 655555443 112 33444444 33322 67888888899999999999999997543
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=3.3e-15 Score=126.86 Aligned_cols=227 Identities=16% Similarity=0.234 Sum_probs=166.1
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
..+|+|.+|++|++.+|.+.....|.||...+.. .++...++..|+ ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------------~w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------------LWEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------------CceeceehhhhC------------cc
Confidence 4699999999999999999999999999988764 257788899999 88
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeec-CchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
|+.|.| +|....|++++.|+...+|.. .++..+..
T Consensus 58 vtgvdW--ap~snrIvtcs~drnayVw~~~~~~~Wkpt------------------------------------------ 93 (361)
T KOG1523|consen 58 VTGVDW--APKSNRIVTCSHDRNAYVWTQPSGGTWKPT------------------------------------------ 93 (361)
T ss_pred eeEEee--cCCCCceeEccCCCCccccccCCCCeeccc------------------------------------------
Confidence 999999 677889999999999999988 44443321
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
..+ ..+....+++.|+|.++.|++| ....|.+|-++. +...= .....-..+...|.++
T Consensus 94 ----------------lvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdWW---VsKhikkPirStv~sl 152 (361)
T KOG1523|consen 94 ----------------LVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDWW---VSKHIKKPIRSTVTSL 152 (361)
T ss_pred ----------------eeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEec-cccee---hhhhhCCccccceeee
Confidence 111 3567789999999999999999 888999998873 32210 0001134577889999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcc-------ccccccccccEEEEeeCCCEEEEE-
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS-------FFTEIIASISDIKFANDGQHLLSR- 341 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~s~~g~~l~~~- 341 (497)
+|+|++ -+|++|+.|+..|++..--...-.+.. ...-+... .+..-.+.+..+.|+|+|..|+-.
T Consensus 153 dWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpa------p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 153 DWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPA------PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred eccCCc-ceecccccCcceeEEEEeeeccccCCC------CCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 999998 899999999999999764322111000 00000000 111224789999999999999874
Q ss_pred ecCeEEEEecCCCCceeeeee
Q 010933 342 DYMNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~ 362 (497)
.|..+.+-|...+.+.+....
T Consensus 226 Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 226 HDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred CCCceEEeecCCCchhccchh
Confidence 679999998865333344443
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=1.4e-14 Score=123.50 Aligned_cols=334 Identities=16% Similarity=0.148 Sum_probs=197.5
Q ss_pred EEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 116 (497)
Q Consensus 37 ~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~ 116 (497)
-+.|||+|+|+|+.+.- .+.|-|.++-+. .+.+.. - +.|.-+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-----------------------~qlf~c-l------------dki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-----------------------HQLFLC-L------------DKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH-----------------------HHHHHH-H------------HHhhhee
Confidence 57899999999998865 788888776432 111111 1 5578889
Q ss_pred EEecCCCCEEEEE-eCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEE
Q 010933 117 WCAAPNGSMFILS-TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA 195 (497)
Q Consensus 117 ~~~s~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (497)
| ..|..+++.+ ..|+.|.+|++...+....
T Consensus 56 W--~ads~~ilC~~yk~~~vqvwsl~Qpew~ck----------------------------------------------- 86 (447)
T KOG4497|consen 56 W--KADSCHILCVAYKDPKVQVWSLVQPEWYCK----------------------------------------------- 86 (447)
T ss_pred e--eccceeeeeeeeccceEEEEEeecceeEEE-----------------------------------------------
Confidence 9 5676676665 6888999999986553211
Q ss_pred eecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC
Q 010933 196 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 273 (497)
Q Consensus 196 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 273 (497)
.......+.+++|+|+|+.+.. + .+-.|.+|.+. +..... ++.....+..++|+|
T Consensus 87 --------------Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~-t~~~~~--------~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 87 --------------IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN-TQKGYL--------LPHPKTNVKGYAFHP 143 (447)
T ss_pred --------------eccCCCcceeeeECCCcceEeeeecceeEEEEEEec-cceeEE--------ecccccCceeEEECC
Confidence 1344667889999999977655 5 89999999998 444443 233445668899999
Q ss_pred CCCcEEEEEeCCCeEEE--------------EEccCCccc-------ccccceecccccccCCccccccc-cccccEEEE
Q 010933 274 IYCNLLAYSSSRGFVRL--------------VDMRQSALC-------DHSARILRDAAESHGSKSFFTEI-IASISDIKF 331 (497)
Q Consensus 274 ~~~~~l~~~~~dg~i~v--------------~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~ 331 (497)
+| ++.+.++....... +++.+-... ...+.+++. .-....+.-| .-.+..++|
T Consensus 144 dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~----~Leykv~aYe~~lG~k~v~w 218 (447)
T KOG4497|consen 144 DG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN----VLEYKVYAYERGLGLKFVEW 218 (447)
T ss_pred CC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecc----hhhheeeeeeeccceeEEEe
Confidence 99 88777665321111 111110000 000000100 0000000001 246788999
Q ss_pred eeCCCEEEEEe-cCeEEEEecCCCCceeeee------------------------------------eeccccc------
Q 010933 332 ANDGQHLLSRD-YMNLKLWDIRMDSTPVATF------------------------------------KIHEHLR------ 368 (497)
Q Consensus 332 s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~------------------------------------~~~~~~~------ 368 (497)
+|.+++|+.|+ |+.+|+.+--+ .+++..+ ..|....
T Consensus 219 sP~~qflavGsyD~~lrvlnh~t-Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE 297 (447)
T KOG4497|consen 219 SPCNQFLAVGSYDQMLRVLNHFT-WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYE 297 (447)
T ss_pred ccccceEEeeccchhhhhhceee-eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhh
Confidence 99999999996 47777755321 1111100 0000000
Q ss_pred --------ccccc-cCCCCCccceeEEEEcCCCCEEEEEeC--CCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCc
Q 010933 369 --------PKLCD-LYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 437 (497)
Q Consensus 369 --------~~~~~-~~~~~~~~~~~~~~~s~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 437 (497)
..+-+ ....+.-.++-.++|++|..+++|-.+ -+.+-+||++..+. ...-....+|+...+.|..+
T Consensus 298 ~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l--~avLiQk~piraf~WdP~~p- 374 (447)
T KOG4497|consen 298 QQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL--HAVLIQKHPIRAFEWDPGRP- 374 (447)
T ss_pred hhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh--hhhhhhccceeEEEeCCCCc-
Confidence 00000 000111112356899999999998765 46799999987533 33333456888889988632
Q ss_pred ccccccceeEeeccCc-eecCCCC-CcccccccCCCeEEEEEecCCCEEEEEeCCceEE
Q 010933 438 RRSSLSNLTRGLYRQA-HENSSSG-HHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 494 (497)
Q Consensus 438 ~~~~~~~l~~~~~d~~-~iw~~~~-~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i 494 (497)
+ |+....... ++|.+.+ .........=.|..+.|+.+|..|+..+.|...+
T Consensus 375 r------L~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 375 R------LVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred e------EEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 2 333333333 8994443 2333333335899999999999999998876543
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=9.6e-16 Score=147.53 Aligned_cols=217 Identities=12% Similarity=0.088 Sum_probs=145.8
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
..|...+.+.+|||||++||..+.+ ..|++||+.+++. +.+..+.+|.
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---------------------~~l~~~~g~~-------- 250 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---------------------KVVASFRGHN-------- 250 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---------------------EEEecCCCcc--------
Confidence 4567789999999999999988754 3799999987643 2234444444
Q ss_pred cccccceeEEEEEecCCCCEEEEEe-CCccEEEee--cCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWK--VRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
..++| +|||+.|+.++ .+|.+.||. +.++....
T Consensus 251 -------~~~~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~----------------------------------- 286 (429)
T PRK01742 251 -------GAPAF--SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ----------------------------------- 286 (429)
T ss_pred -------CceeE--CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-----------------------------------
Confidence 45789 78999888764 688777664 44333211
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccC
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
+ ..+...+....|+|+|+.|+.+ .++...||+++..+..... +
T Consensus 287 --------------------------l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-------l- 331 (429)
T PRK01742 287 --------------------------L-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-------V- 331 (429)
T ss_pred --------------------------e-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-------e-
Confidence 1 3445567789999999987764 6788888887643333332 1
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
.+.. ....|+|+| +.|++.+.++ +.+||+.+++.. .+... .....+.|+|+|++|+.
T Consensus 332 ~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~~--------------~~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 332 GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSST--------------FLDESPSISPNGIMIIY 388 (429)
T ss_pred cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecCC--------------CCCCCceECCCCCEEEE
Confidence 2222 457899999 8888887765 556999887532 11110 11245789999999998
Q ss_pred Ee-cCeEEEEecC-CCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933 341 RD-YMNLKLWDIR-MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 391 (497)
Q Consensus 341 ~~-~~~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 391 (497)
++ ++...+|++. .+++...++..|.+.+ ...+|+|-
T Consensus 389 ~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~---------------~~p~wsp~ 426 (429)
T PRK01742 389 SSTQGLGKVLQLVSADGRFKARLPGSDGQV---------------KFPAWSPY 426 (429)
T ss_pred EEcCCCceEEEEEECCCCceEEccCCCCCC---------------CCcccCCC
Confidence 75 4666666642 2377788887776643 46888874
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=7.4e-17 Score=143.21 Aligned_cols=265 Identities=12% Similarity=0.109 Sum_probs=200.9
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
-.-+.+.| +.+|++++.++.-|.+-.+|+.++++..-.
T Consensus 130 FGPY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---------------------------------------- 167 (545)
T KOG1272|consen 130 FGPYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---------------------------------------- 167 (545)
T ss_pred cCCeeeee--cCCccEEEecCCccceeeeecccceeeeee----------------------------------------
Confidence 44567888 689999999999999999999988754311
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.-...|.++.|..+.+++|++....+++||-. +- .++. +. ....|..+
T Consensus 168 ----------------------~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-Gt-ElHC-------lk-~~~~v~rL 215 (545)
T KOG1272|consen 168 ----------------------NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GT-ELHC-------LK-RHIRVARL 215 (545)
T ss_pred ----------------------ehhhhhhhhhhhcchHHHHhhhhceEEEecCC-Cc-EEee-------hh-hcCchhhh
Confidence 12345778899888889999999999999977 33 3332 22 33567899
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~l 348 (497)
.|-|.. .+|++++..|.++.-|+.+|+++. .+.. -.+.+..|.-+|-...+-.| +.|+|.+
T Consensus 216 eFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa----~~~t-------------~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 216 EFLPYH-FLLVAASEAGFLKYQDVSTGKLVA----SIRT-------------GAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred cccchh-heeeecccCCceEEEeechhhhhH----HHHc-------------cCCccchhhcCCccceEEEcCCCceEEe
Confidence 999998 889999999999999999998763 2222 12567788888888788888 4599999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 428 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 428 (497)
|.... ..++..+-.|.+.+ .++++.++|+|+||.|.|..++|||++.-..+ .++.. ..+...
T Consensus 278 WSP~s-kePLvKiLcH~g~V---------------~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~~ 339 (545)
T KOG1272|consen 278 WSPNS-KEPLVKILCHRGPV---------------SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPASN 339 (545)
T ss_pred cCCCC-cchHHHHHhcCCCc---------------ceEEECCCCcEEeecccccceeEeeecccccc-ceeec-CCCccc
Confidence 99986 78888888999876 69999999999999999999999999987544 33333 345556
Q ss_pred eEeecCCCcccccccceeEeeccCceecC---C--CCCccccc--ccCCCeEEEEEecCCCEEEEEeCCce
Q 010933 429 PILQAAPRARRSSLSNLTRGLYRQAHENS---S--SGHHELSY--NLSSKLLHLAWHPTTNLIACANGNSL 492 (497)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~~~~d~~~iw~---~--~~~~~~~~--~~~~~i~~l~~~p~~~~la~~~~~~~ 492 (497)
+++|. -+.||.+-.+-..+|. . +....... ....+|..|.|.|.+++|-+|..+++
T Consensus 340 ls~Sq--------kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 340 LSLSQ--------KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ccccc--------ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 66655 3457877777779991 1 11111111 23459999999999999998887664
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=2.3e-15 Score=127.76 Aligned_cols=245 Identities=11% Similarity=0.094 Sum_probs=173.6
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|++.+| ++|...++.+-....|.||...+.+.
T Consensus 11 ~pitchAw--n~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 11 EPITCHAW--NSDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred Cceeeeee--cCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 88999999 78999999999999999999877651
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
.+...++ ..|...|+.++|+|..+.|++| .|..-++|....++.-..++ .+..+....++
T Consensus 45 -------------w~~~htl-s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl-----vLlRiNrAAt~ 105 (361)
T KOG1523|consen 45 -------------WEPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL-----VLLRINRAATC 105 (361)
T ss_pred -------------ceeceeh-hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce-----eEEEeccceee
Confidence 1233333 7899999999999999999999 99999999985344333221 25568889999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLK 347 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 347 (497)
+.|+|.+ +.||+|+.-..|.||-++..+.-... +.+. ..+...|+++.|+|++-+|++|+ |+..|
T Consensus 106 V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVs-Khik------------kPirStv~sldWhpnnVLlaaGs~D~k~r 171 (361)
T KOG1523|consen 106 VKWSPKE-NKFAVGSGARLISVCYYEQENDWWVS-KHIK------------KPIRSTVTSLDWHPNNVLLAAGSTDGKCR 171 (361)
T ss_pred EeecCcC-ceEEeccCccEEEEEEEecccceehh-hhhC------------CccccceeeeeccCCcceecccccCccee
Confidence 9999999 99999999999999998764321100 1011 12346799999999999999984 79899
Q ss_pred EEecCCC---CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 348 LWDIRMD---STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 348 lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
++..--. .++...--+...+...++..+.... -.+..+.|+|+|..|+-.+.|..+.+=|.....+....+....-
T Consensus 172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~g-gwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~l 250 (361)
T KOG1523|consen 172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSG-GWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQL 250 (361)
T ss_pred EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCC-CceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccC
Confidence 8875310 1111111111111112222221111 11368999999999999999999999998776544455555557
Q ss_pred ceeeeEeecC
Q 010933 425 ENRKPILQAA 434 (497)
Q Consensus 425 ~v~~~~~~~~ 434 (497)
|..++.+..+
T Consensus 251 P~ls~~~ise 260 (361)
T KOG1523|consen 251 PLLSVSWISE 260 (361)
T ss_pred CceeeEeecC
Confidence 7777777653
No 205
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=3.6e-16 Score=129.02 Aligned_cols=298 Identities=9% Similarity=0.069 Sum_probs=170.2
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCc
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 169 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (497)
.-.+++|. +.|+++.| ..+.+|+++..-|.|++|++.+..-......... ..+
T Consensus 7 ~fvLRp~~------------~~v~s~~f---qa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~------------~~i 59 (323)
T KOG0322|consen 7 FFVLRPHS------------SSVTSVLF---QANERLMSGLSVGIVKMWVLQTERDLPLIRLFGR------------LFI 59 (323)
T ss_pred eeEecccc------------chheehhh---ccchhhhcccccceEEEEEeecCccchhhhhhcc------------cee
Confidence 34466888 88999999 3445699999999999999987664332211000 011
Q ss_pred cccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCC-eEEEEeCccCce
Q 010933 170 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-RINLWNLEISDQ 247 (497)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~-~i~iwd~~~~~~ 247 (497)
...+..+...+...+. +..+.+|++... .+...|.-.++++.|.+.. +... ... ..-.|+-+....
T Consensus 60 t~lq~~p~d~l~tqgR---d~~L~lw~ia~s-------~~i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde 127 (323)
T KOG0322|consen 60 TNLQSIPNDSLDTQGR---DPLLILWTIAYS-------AFISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE 127 (323)
T ss_pred eceeecCCcchhhcCC---CceEEEEEccCc-------ceEEEeeeeccccccccce--eccCCCcchhheecCCcccch
Confidence 1111222222222222 456666666531 1113444444444444321 2222 111 222232221100
Q ss_pred --------eeEEeecCCCccCCCCCCeEEEEEeCC-CC-cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcc
Q 010933 248 --------CFNIVDMKPSNMDDLTEVITSAEFHPI-YC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS 317 (497)
Q Consensus 248 --------~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (497)
..++ .+.+..-.+..+.+++..+.-+ +. -++++|.++|.+.+||+.++..+......++. ..
T Consensus 128 ~h~~D~g~~tqv-~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv-------~~ 199 (323)
T KOG0322|consen 128 THKQDGGDTTQV-QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV-------ES 199 (323)
T ss_pred hhhhccCcccee-EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc-------cc
Confidence 0111 0111111223455666664322 21 35667788999999999987433222122111 12
Q ss_pred ccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCC-Cce-ee-eeeecccccccccccCCCCCccceeEEEEcCCCC
Q 010933 318 FFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMD-STP-VA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 393 (497)
Q Consensus 318 ~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 393 (497)
....|..++.++.+.+.-..=++| -+..+..|+++.. +.+ +. .+......+ ..+.+-||++
T Consensus 200 ~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv---------------~gvrIRpD~K 264 (323)
T KOG0322|consen 200 PNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGV---------------SGVRIRPDGK 264 (323)
T ss_pred chhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCc---------------cceEEccCCc
Confidence 234577899999998643333333 3467888888642 111 11 111111111 4799999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC
Q 010933 394 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS 457 (497)
Q Consensus 394 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~ 457 (497)
.+||++.|++|+||+.++...+ ..++.|.+.+++++|+|. .. .+|.++.|+. .+|+
T Consensus 265 IlATAGWD~RiRVyswrtl~pL-AVLkyHsagvn~vAfspd--~~-----lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 265 ILATAGWDHRIRVYSWRTLNPL-AVLKYHSAGVNAVAFSPD--CE-----LMAAASKDARISLWK 321 (323)
T ss_pred EEeecccCCcEEEEEeccCCch-hhhhhhhcceeEEEeCCC--Cc-----hhhhccCCceEEeee
Confidence 9999999999999999999666 899999999999999994 33 4899999999 8883
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=138.09 Aligned_cols=249 Identities=14% Similarity=0.133 Sum_probs=162.8
Q ss_pred ccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccC
Q 010933 89 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 168 (497)
Q Consensus 89 ~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
..+++.||+ +.|++++| +.+|.+|++||.|-.+.|||.-..+....
T Consensus 42 lE~eL~GH~------------GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~~Kllhs-------------------- 87 (758)
T KOG1310|consen 42 LEAELTGHT------------GCVNCLEW--NADGELLASGSDDTRLIVWDPFEYKLLHS-------------------- 87 (758)
T ss_pred hhhhhcccc------------ceecceee--cCCCCEEeecCCcceEEeecchhcceeee--------------------
Confidence 356789999 89999999 78999999999999999999875553321
Q ss_pred ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccC
Q 010933 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEIS 245 (497)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~ 245 (497)
+-.+|...|.++.|-| +.+.+++| .|..|+++|+...
T Consensus 88 ----------------------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 88 ----------------------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred ----------------------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 1279999999999988 56678888 9999999999842
Q ss_pred ceeeEE--eecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 246 DQCFNI--VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 246 ~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
+..-.- ......-+..|...|..++..|++++.+.++++||+|+-||+|....+......... ...+...-
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~-------l~ny~~~l 200 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI-------LVNYNPQL 200 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH-------HHHhchhh
Confidence 211000 000001256788999999999999999999999999999999985444211100000 00011112
Q ss_pred ccccEEEEeeCC-CEEEEE-ecCeEEEEecCCCCceeeeeeeccc-------ccccc-----cccCCC--CCccceeEEE
Q 010933 324 ASISDIKFANDG-QHLLSR-DYMNLKLWDIRMDSTPVATFKIHEH-------LRPKL-----CDLYNN--DSIFDKFECS 387 (497)
Q Consensus 324 ~~i~~~~~s~~g-~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~-------~~~~~-----~~~~~~--~~~~~~~~~~ 387 (497)
-...++.++|.. .+|++| ++--.++||.+...+....-..+.. .+.-. |....+ ..+.-.+-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 356789999966 467776 5688999996431111111000000 01111 111110 1111235689
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 010933 388 VSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 418 (497)
Q Consensus 388 ~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 418 (497)
|+|+|.-|+..-..-.|+++|+..++.....
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 9999987776666668999999987665333
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.9e-14 Score=121.22 Aligned_cols=267 Identities=14% Similarity=0.134 Sum_probs=166.3
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
..+.-++|++--..+|++..|..|+||+-.... ...++.-. ...|
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~------------------------pt~Lks~s-----------Qrnv 143 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC------------------------PTKLKSVS-----------QRNV 143 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC------------------------Cceecchh-----------hcce
Confidence 467789999966678889999999999976522 22232222 1569
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
.+++|-|. ....|+.|+.. -|.+|....... .....+..
T Consensus 144 tclawRPl-saselavgCr~-gIciW~~s~tln~~r~~~~~s-------------------------------------- 183 (445)
T KOG2139|consen 144 TCLAWRPL-SASELAVGCRA-GICIWSDSRTLNANRNIRMMS-------------------------------------- 183 (445)
T ss_pred eEEEeccC-Ccceeeeeecc-eeEEEEcCccccccccccccc--------------------------------------
Confidence 99999642 23456666665 599997653221 11000000
Q ss_pred eEEEeecCCccceeeeee-ccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 192 TKIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
..+.+.+ -.+| .+|++++|++||..++++ .|..|.|||.+ .+....+. ...-+.+.-
T Consensus 184 -----------~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd-tg~~~pL~-------~~glgg~sl 243 (445)
T KOG2139|consen 184 -----------THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPD-TGQKIPLI-------PKGLGGFSL 243 (445)
T ss_pred -----------ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCC-CCCccccc-------ccCCCceee
Confidence 0011111 1455 689999999999999997 89999999999 55554431 133466788
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 348 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~l 348 (497)
+.|+||+ .+|+.++-|+..++|......... +-.-. .+.+...+|+|+|++|+.+..+.-++
T Consensus 244 LkwSPdg-d~lfaAt~davfrlw~e~q~wt~e---rw~lg--------------sgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 244 LKWSPDG-DVLFAATCDAVFRLWQENQSWTKE---RWILG--------------SGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred EEEcCCC-CEEEEecccceeeeehhcccceec---ceecc--------------CCceeeeeecCCCCEEEEEEcCCceE
Confidence 9999999 999999999999999655432211 11111 25799999999999998887788888
Q ss_pred EecCCCCceeeeee-eccccccccccc-------CCCCCccceeEEEEcCCCCEEEEEeCCCc--------EEEEEcCCC
Q 010933 349 WDIRMDSTPVATFK-IHEHLRPKLCDL-------YNNDSIFDKFECSVSGDGLHFATGSYSNL--------LRIFSHGVG 412 (497)
Q Consensus 349 wd~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~~~~l~s~~~dg~--------i~vw~~~~~ 412 (497)
|.+...++...... +....+..+.++ ...-+.-.+.+++|.|.|.+||+.-..+. |.+||....
T Consensus 306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 88765443321110 000000000000 00000111258999999999998765443 566766543
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.2e-15 Score=132.68 Aligned_cols=202 Identities=15% Similarity=0.160 Sum_probs=142.1
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 115 (497)
Q Consensus 36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l 115 (497)
.+++|+.+|..||+|+.||.+|||++... ..+.....|. +.|.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-----------------------~t~l~e~~~~------------~eV~DL 192 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-----------------------LTILEEIAHH------------AEVKDL 192 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-----------------------hhhhhhHhhc------------Cccccc
Confidence 78999999999999999999999996543 3356667777 789999
Q ss_pred EEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCc---ccccccccccCcce
Q 010933 116 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF---AHGYHLEWTENMAT 192 (497)
Q Consensus 116 ~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 192 (497)
.| +||++.|++.+.| ..+||+++++......+.. ..+...-.+.+..+. .+...+...+.+.+
T Consensus 193 ~F--S~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~-----------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v 258 (398)
T KOG0771|consen 193 DF--SPDGKFLASIGAD-SARVWSVNTGAALARKTPF-----------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGV 258 (398)
T ss_pred ee--CCCCcEEEEecCC-ceEEEEeccCchhhhcCCc-----------ccchhhhhceecccCCCceEEEEEecCCCCce
Confidence 99 7999999999999 8999999998533322110 001111222222222 22222333344455
Q ss_pred EEEeecCCccceeee--eeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 193 KIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
+.|++........++ .. ......|.+++++++|++++.| .||.|-|++.. .-+.++.+ -+.|...|+.+
T Consensus 259 ~~~~~~~w~~~~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~-~lq~~~~v------k~aH~~~VT~l 330 (398)
T KOG0771|consen 259 RLCDISLWSGSNFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK-SLQRLQYV------KEAHLGFVTGL 330 (398)
T ss_pred eEEEeeeeccccccchhhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEec-eeeeeEee------hhhheeeeeeE
Confidence 555544322111111 11 1223479999999999999999 99999999988 44455543 56799999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
.|+|+. +.+++.+.|..+.+.-+..
T Consensus 331 tF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 331 TFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEcCCc-CcccccccCCceeEEEEee
Confidence 999998 9999999999998887764
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.3e-16 Score=137.47 Aligned_cols=309 Identities=12% Similarity=0.112 Sum_probs=212.0
Q ss_pred ccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933 87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 166 (497)
Q Consensus 87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
+.....|..|. +.|+.|.| +..|..++++|.|..|.+||+..+..+..
T Consensus 132 ~~l~~kL~~H~------------GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------------------ 179 (559)
T KOG1334|consen 132 LRLQKKLNKHK------------GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKLS------------------ 179 (559)
T ss_pred hhhhhcccCCC------------Cccceeee--cccCceeeccCccceEEeehhhccCcccc------------------
Confidence 34456677787 88999999 68899999999999999999987763321
Q ss_pred cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCc
Q 010933 167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLE 243 (497)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~ 243 (497)
|..+|...|....|-| +.+.++++ .||.+++=.+.
T Consensus 180 ------------------------------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 180 ------------------------------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred ------------------------------------------cccccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 2368888888888876 44567777 99999998777
Q ss_pred cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
..+....+ ..+..|.++|+.++..|+.+..|.+++.|+.+.-+|++.+..... +.. ...... ..
T Consensus 218 ~t~~~e~t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~----~~c-r~~~~~------~~ 281 (559)
T KOG1334|consen 218 ETGYVENT-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK----FVC-READEK------ER 281 (559)
T ss_pred cccceecc-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce----eee-eccCCc------cc
Confidence 55544433 236789999999999999989999999999999999998754321 111 000000 01
Q ss_pred ccccEEEEeeCCC-EEEEE-ecCeEEEEecCCCCceeeeeeeccccccccccc-CCCCCccceeEEEEcCCCCEEEEEeC
Q 010933 324 ASISDIKFANDGQ-HLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSY 400 (497)
Q Consensus 324 ~~i~~~~~s~~g~-~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~~~ 400 (497)
-....++..|... .+++| .+--+++||.+.-.+. ...+ .+..+|.. .-.+....|++++|+.++.-|.+.-.
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 2577888888765 56665 5688999998642111 0000 11111110 00133334689999988777777777
Q ss_pred CCcEEEEEcCCC------------CcceEEEeccCc--ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCCCcc
Q 010933 401 SNLLRIFSHGVG------------SAGGITVEAGKN--ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSGHHE 463 (497)
Q Consensus 401 dg~i~vw~~~~~------------~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~~~~ 463 (497)
|-.|++++-.-+ ..+...+++|.+ .|..+-|--+ ...+ +++|++-|. -+| +.++++.
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEy-----VvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEY-----VVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC-ccce-----EEecCccceEEEEecchhHHHH
Confidence 888999954332 123344778875 4666666543 2333 455555555 888 5556666
Q ss_pred cccccCCCeEEEEEecCCCEEEEEe-CCceEEEe
Q 010933 464 LSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 464 ~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~~ 496 (497)
.+.+....|+||.=||.-++||+++ +-.++||.
T Consensus 431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred HhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 6666677999999999999999999 66699996
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1e-13 Score=133.19 Aligned_cols=212 Identities=16% Similarity=0.161 Sum_probs=139.0
Q ss_pred cceeEEEEEecCCCCEEEEEe---CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+.+.+| +|||+.|+..+ .+..+.+|++.+++...+.
T Consensus 199 ~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------------------------------------- 239 (429)
T PRK03629 199 QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------------------------------------- 239 (429)
T ss_pred CceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-------------------------------------
Confidence 66899999 68999988764 3457888888776533221
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCccCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
.....+....|+|||+.|+.. .++ .|++||+. ++.... +..+
T Consensus 240 -------------------------~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-tg~~~~--------lt~~ 285 (429)
T PRK03629 240 -------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQ--------VTDG 285 (429)
T ss_pred -------------------------CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEE--------ccCC
Confidence 112223457899999988864 344 58889988 444433 2333
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCC-Ce--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSR-GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~d-g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
...+....|+|+| +.|+..+.+ +. |.++|+.+++. +.+.. +........|+|||++|+
T Consensus 286 ~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~-----~~lt~-------------~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 286 RSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAP-----QRITW-------------EGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCe-----EEeec-------------CCCCccCEEECCCCCEEE
Confidence 4567789999999 877776654 44 44446655432 11111 013356788999999988
Q ss_pred EEe-c---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc---EEEEEcCCC
Q 010933 340 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL---LRIFSHGVG 412 (497)
Q Consensus 340 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~---i~vw~~~~~ 412 (497)
... + ..|.+||+.+ +. ...+...... ....|+|||++|+..+.++. +.+++++..
T Consensus 347 ~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~~~----------------~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLAT-GG-VQVLTDTFLD----------------ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEEccCCCceEEEEECCC-CC-eEEeCCCCCC----------------CCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 753 2 4688899875 43 3333321111 25889999999999888764 677777432
Q ss_pred CcceEEEeccCcceeeeEeec
Q 010933 413 SAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 413 ~~~~~~~~~~~~~v~~~~~~~ 433 (497)
....+.+|.+.+...+|+|
T Consensus 409 --~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 --FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --CeEECccCCCCcCCcccCC
Confidence 3366778888888888876
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.3e-13 Score=119.50 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=104.6
Q ss_pred cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccc
Q 010933 233 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAES 312 (497)
Q Consensus 233 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~ 312 (497)
.-+.+++++.+. +..+..+ .....|.++.++.+ .|+++-.+. |+|||++..+++ +.++..
T Consensus 66 qpr~Lkv~~~Kk-~~~ICe~--------~fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklL----hTI~t~--- 125 (391)
T KOG2110|consen 66 QPRKLKVVHFKK-KTTICEI--------FFPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLL----HTIETT--- 125 (391)
T ss_pred CCceEEEEEccc-CceEEEE--------ecCCceEEEEEccc---eEEEEEccc-EEEEecccceee----hhhhcc---
Confidence 345788888873 3322221 24467899998875 355555444 999999998766 444431
Q ss_pred cCCccccccccccccEEEEeeCCCEEEEE--ec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc
Q 010933 313 HGSKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 389 (497)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 389 (497)
..+...+.++++++.+.|+|.- .+ |.|.+||+.+ -+++..+..|++.+ -+++|+
T Consensus 126 -------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~l---------------Aalafs 182 (391)
T KOG2110|consen 126 -------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPL---------------AALAFS 182 (391)
T ss_pred -------CCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEecCCce---------------eEEEEC
Confidence 1123456777777777799984 23 9999999986 88999999999875 489999
Q ss_pred CCCCEEEEEeCCCc-EEEEEcCCCCcceEEEe
Q 010933 390 GDGLHFATGSYSNL-LRIFSHGVGSAGGITVE 420 (497)
Q Consensus 390 ~~~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~ 420 (497)
++|.+|||+|+.|+ |||+.+.+|+.+ ..++
T Consensus 183 ~~G~llATASeKGTVIRVf~v~~G~kl-~eFR 213 (391)
T KOG2110|consen 183 PDGTLLATASEKGTVIRVFSVPEGQKL-YEFR 213 (391)
T ss_pred CCCCEEEEeccCceEEEEEEcCCccEe-eeee
Confidence 99999999999987 799999998554 4443
No 212
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.9e-14 Score=115.77 Aligned_cols=244 Identities=10% Similarity=0.019 Sum_probs=157.4
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEe--ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933 216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV--DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 292 (497)
.|..-+++|.+++|++| .+|.|.+..+.........- ..+....++|+.+|+.++|.. .+|++++. |.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEee
Confidence 45566789999999999 99999999876321100000 000013578999999999994 35666654 9999998
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEecCeEEEEecCCCCceeeeeeecccccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 371 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 371 (497)
.+.........+.++....... -......|++|...|.. ..+.+|.|+.++.||+++ ++...++++|..-+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~----~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i~r~~rGHtDYv--- 159 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQV----DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRIQREYRGHTDYV--- 159 (325)
T ss_pred ehhhhhhccchhhhhhcCcccc----CcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEEEEEEcCCccee---
Confidence 7764332111122222000000 00112468999999865 556667889999999997 99999999999864
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc----------ceeeeEeecCCCccccc
Q 010933 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN----------ENRKPILQAAPRARRSS 441 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~ 441 (497)
.++.--.....+++|++||++++||.++++.+ ..++..+. .|-+++. +..+
T Consensus 160 ------------H~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~wigala~----~edW-- 220 (325)
T KOG0649|consen 160 ------------HSVVGRNANGQILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGKWIGALAV----NEDW-- 220 (325)
T ss_pred ------------eeeeecccCcceeecCCCccEEEEecccccee-EEeccccChhhcCcccCceeEEEec----cCce--
Confidence 46665444557899999999999999998765 44433222 1222332 2223
Q ss_pred ccceeEeeccCceecCCC-CCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEE
Q 010933 442 LSNLTRGLYRQAHENSSS-GHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH 495 (497)
Q Consensus 442 ~~~l~~~~~d~~~iw~~~-~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~ 495 (497)
|++|+.....+|+.. ......+....++..+.|- .+.+++++ .+.+.-|
T Consensus 221 ---lvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~--~d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 221 ---LVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFV--DDCVLIGGEGNHVQSY 271 (325)
T ss_pred ---EEecCCCceeEEeccCCCceEEEecccceeEeeee--cceEEEeccccceeee
Confidence 778877666999433 3445567788899899885 44455555 4334443
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=7.9e-14 Score=138.14 Aligned_cols=241 Identities=15% Similarity=0.203 Sum_probs=160.1
Q ss_pred CCcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccc
Q 010933 84 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTL 163 (497)
Q Consensus 84 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (497)
.|....++.+..|+ ..|..++.+ ++++.+|++||.||+|++|+...-....
T Consensus 1035 ~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------------- 1085 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEG---------------- 1085 (1431)
T ss_pred CccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCc----------------
Confidence 56666777777777 888899886 4667999999999999999986533110
Q ss_pred ccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeC
Q 010933 164 LAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNL 242 (497)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~ 242 (497)
...++..++ ......+.++...+.+..+|.| .||.|.+.++
T Consensus 1086 -------------------------------------~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1086 -------------------------------------GSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred -------------------------------------ceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEc
Confidence 012233344 3356788899999999999999 9999999998
Q ss_pred ccC-ceeeEEeecCCCccCCCCCCeEEEEEeCCCCc-EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccc
Q 010933 243 EIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 320 (497)
Q Consensus 243 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (497)
+.. ....................+..-++...... .++.+..-+.|..||+++...........+
T Consensus 1128 d~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------------- 1194 (1431)
T KOG1240|consen 1128 DHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------------- 1194 (1431)
T ss_pred cccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------------
Confidence 841 11111111111112222233333344433223 788899999999999998654422222222
Q ss_pred cccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC---CCEEE
Q 010933 321 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GLHFA 396 (497)
Q Consensus 321 ~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~ 396 (497)
.+.|++++.+|.+.+++.|+. |.+.+||++. +.++..+...... . ++.+..+|- ....+
T Consensus 1195 --hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~-----------~---i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1195 --HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHPARA-----------P---IRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred --ccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCcccC-----------C---cceEEeeccCCCCceEE
Confidence 278999999999999999966 9999999996 7777776543321 1 245555552 34555
Q ss_pred EEe--CCCcEEEEEcCCCCcceEEEecc
Q 010933 397 TGS--YSNLLRIFSHGVGSAGGITVEAG 422 (497)
Q Consensus 397 s~~--~dg~i~vw~~~~~~~~~~~~~~~ 422 (497)
+++ ..+.|.+|++.+|. ....+...
T Consensus 1258 s~~~~~~nevs~wn~~~g~-~~~vl~~s 1284 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGL-RQTVLWAS 1284 (1431)
T ss_pred EecccCCCceeeeecccCc-ceEEEEcC
Confidence 444 47889999999984 34555544
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.5e-15 Score=130.77 Aligned_cols=176 Identities=15% Similarity=0.113 Sum_probs=132.4
Q ss_pred eEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC
Q 010933 218 NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 296 (497)
Q Consensus 218 ~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 296 (497)
..++|+++|..+++| .||++++|+........ ....|...|.++.|+||| ++|++.+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 679999999999999 99999999966233222 256799999999999999 999999999 8999999998
Q ss_pred cccccccceecccccccCCccccccccccccEEEEeeCC---CEE-EEE-ec-CeEEEEecCCCCc-----eeeeeeecc
Q 010933 297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHL-LSR-DY-MNLKLWDIRMDST-----PVATFKIHE 365 (497)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l-~~~-~~-~~i~lwd~~~~~~-----~~~~~~~~~ 365 (497)
..+..... ++. ...+..+.|+.|+ .+. ++. .. +.|+.||+..... ..+.+..++
T Consensus 218 ~~~a~~t~-~~k--------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 218 AALARKTP-FSK--------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred chhhhcCC-ccc--------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 54422111 111 1346677887766 333 332 33 7888877754111 112222222
Q ss_pred cccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933 366 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 434 (497)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 434 (497)
. +.+++.++||+++|.|+.||.|.|++..+.+.....-++|...|+.+.|+|+
T Consensus 283 s----------------iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 283 S----------------ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred c----------------ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 2 2699999999999999999999999999988888888999999999999994
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.3e-14 Score=137.25 Aligned_cols=245 Identities=14% Similarity=0.170 Sum_probs=154.7
Q ss_pred CCCeeEEEeCC--CCCEEEEE-cCCeEEEEeCccCc-eeeEEe---ecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933 214 DFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-QCFNIV---DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 286 (497)
Q Consensus 214 ~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 286 (497)
...|+.+.+-. |..++++| .||.|+||+--..+ +..+.+ ..-..-+.+..+.=.-+.|.... .+|++++.-.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVR 1187 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCee
Confidence 44677777732 55677888 99999999744222 222211 00000111112222445677666 6677777789
Q ss_pred eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe-eCCCEEEEE-ecCeEEEEecCCCCc--eeeeee
Q 010933 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSR-DYMNLKLWDIRMDST--PVATFK 362 (497)
Q Consensus 287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~-~~~~i~lwd~~~~~~--~~~~~~ 362 (497)
.|+|||+.....+ ..+.. +-...++++.-+ +.|+.+++| .||.|++||.+.... .+..++
T Consensus 1188 ~IRIWDa~~E~~~----~diP~------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVV----ADIPY------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred EEEEEecccceeE----eeccc------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 9999999875443 22221 012456666544 346889998 679999999986433 567777
Q ss_pred ecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeCCCcEEEEEcCCC-CcceEEEeccC--c-ceeeeEeecCCCc
Q 010933 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG-SAGGITVEAGK--N-ENRKPILQAAPRA 437 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~dg~i~vw~~~~~-~~~~~~~~~~~--~-~v~~~~~~~~~~~ 437 (497)
.|.... . |..+.+.+.|- .|++|+.||.|++||++.. ..-...+..|. + ..+++.... ..
T Consensus 1252 ~h~~~~----------~---Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~--ha 1316 (1387)
T KOG1517|consen 1252 EHNDVE----------P---IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE--HA 1316 (1387)
T ss_pred ccCCcc----------c---ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc--CC
Confidence 777642 1 14788888654 4999999999999999874 22223344444 3 466777766 44
Q ss_pred ccccccceeEeeccCc-eecCCC-CCccccc-------ccCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933 438 RRSSLSNLTRGLYRQA-HENSSS-GHHELSY-------NLSSKLLHLAWHPTTNLIACANGNS-LFFHY 496 (497)
Q Consensus 438 ~~~~~~~l~~~~~d~~-~iw~~~-~~~~~~~-------~~~~~i~~l~~~p~~~~la~~~~~~-~~i~~ 496 (497)
.+ +|+|+. +. +||... +.+.... .-...+.+++|||..-+||+|..|+ +-||.
T Consensus 1317 pi-----iAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1317 PI-----IASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred Ce-----eeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 44 899988 66 999433 3222211 2234678999999999999998555 77775
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=7.5e-14 Score=127.61 Aligned_cols=292 Identities=17% Similarity=0.219 Sum_probs=192.0
Q ss_pred CCCcccCCcceEEEEEcCCCCEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccc
Q 010933 25 PDEELQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 103 (497)
Q Consensus 25 ~~~~~~h~~~I~~i~~sp~g~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 103 (497)
.+..+.+...-+.|..+|||+|+ |+|...-.|++||+..-. ..|.-|..
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-------------------------LKFERhlD----- 93 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-------------------------LKFERHLD----- 93 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccce-------------------------eeeeeccc-----
Confidence 34456688899999999999986 778888999999987642 22344431
Q ss_pred cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
+.+..+... +.|-..++.--.|++|.+....+... ..+ +.-|+-+..+... +-++
T Consensus 94 ------ae~V~feiL-sDD~SK~v~L~~DR~IefHak~G~hy~~RI---------------P~~GRDm~y~~~s--cDly 149 (703)
T KOG2321|consen 94 ------AEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYGRHYRTRI---------------PKFGRDMKYHKPS--CDLY 149 (703)
T ss_pred ------ccceeEEEe-ccchhhheEeecCceeeehhhcCeeeeeec---------------CcCCccccccCCC--ccEE
Confidence 334444333 45555666667788777654332110 011 0111112211111 1111
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
.++. +..+.-.+++.. +.+.-| ......++++..++-..+|++| .+|.|..||.+ .+....++++... ...
T Consensus 150 ~~gs--g~evYRlNLEqG---rfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR-~ksrv~~l~~~~~-v~s 221 (703)
T KOG2321|consen 150 LVGS--GSEVYRLNLEQG---RFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR-DKSRVGTLDAASS-VNS 221 (703)
T ss_pred Eeec--CcceEEEEcccc---cccccc-ccccccceeeeecCccceEEecccCceEEEecch-hhhhheeeecccc-cCC
Confidence 1111 233444444432 333333 4456789999999999999999 89999999999 5555555444321 222
Q ss_pred C-----CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC--
Q 010933 262 L-----TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-- 334 (497)
Q Consensus 262 ~-----~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-- 334 (497)
| ...|+++.|+.+| -.+++|+.+|.+.|||++..+.+.. ..| +..-+|..+.|.+.
T Consensus 222 ~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~-----kdh-----------~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLV-----KDH-----------GYELPIKKLDWQDTDQ 284 (703)
T ss_pred CccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceee-----ccc-----------CCccceeeecccccCC
Confidence 3 3459999999999 9999999999999999998765421 111 12357888999775
Q ss_pred CCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 335 GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 335 g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
+..+++.+...++|||-.+ ++....+...... ..+++-|++-+++++-+++.+..|=+..-
T Consensus 285 q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 285 QNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCCCcceeEEcccc
Confidence 4567776669999999986 8877777644432 58999999999999999999888877654
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=7.3e-14 Score=118.06 Aligned_cols=147 Identities=19% Similarity=0.260 Sum_probs=103.5
Q ss_pred EEEeCCCCCEEEEE-c----------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE--eCC
Q 010933 219 SISNNSDCETFVSA-D----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS--SSR 285 (497)
Q Consensus 219 ~~~~~~~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~d 285 (497)
.+.|+++|+.|+.- . -+...+|.++..+.....+. + ...++|.+++|+|+| ..|++. ..+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-----l-~~~~~I~~~~WsP~g-~~favi~g~~~ 82 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-----L-KKEGPIHDVAWSPNG-NEFAVIYGSMP 82 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-----c-cCCCceEEEEECcCC-CEEEEEEccCC
Confidence 57899999888763 2 12455555543333333321 1 234579999999999 666544 457
Q ss_pred CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe----cCeEEEEecCCCCceeeee
Q 010933 286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVATF 361 (497)
Q Consensus 286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~lwd~~~~~~~~~~~ 361 (497)
+.|.+||++. +.+ ..+.. ..++.+.|+|+|++|++++ .|.|.+||++. .+.+...
T Consensus 83 ~~v~lyd~~~-~~i----~~~~~---------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~ 141 (194)
T PF08662_consen 83 AKVTLYDVKG-KKI----FSFGT---------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTF 141 (194)
T ss_pred cccEEEcCcc-cEe----EeecC---------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeecc
Confidence 8999999973 222 22322 5678999999999999874 27899999985 6766665
Q ss_pred eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCcEEEEEcC
Q 010933 362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHG 410 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~vw~~~ 410 (497)
..... +.++|+|||++|+++.. |+.++||++.
T Consensus 142 ~~~~~-----------------t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 EHSDA-----------------TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccCcE-----------------EEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 43321 58999999999998874 7889999985
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.8e-13 Score=129.38 Aligned_cols=213 Identities=13% Similarity=0.154 Sum_probs=133.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCC---ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+.+.+| +|||+.|+.++.+ ..|.+||+.+++...+
T Consensus 196 ~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-------------------------------------- 235 (427)
T PRK02889 196 EPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-------------------------------------- 235 (427)
T ss_pred CCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 67889999 6899999887643 4588999887763321
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 264 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (497)
......+...+|+|||+.|+. . .++...+|.++........ +..+..
T Consensus 236 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------lt~~~~ 284 (427)
T PRK02889 236 ------------------------ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR-------LTQSSG 284 (427)
T ss_pred ------------------------ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE-------CCCCCC
Confidence 112234457899999998875 4 6777666655422222222 334445
Q ss_pred CeEEEEEeCCCCcEEEEEeC-CCeEEEEEcc--CCcccccccce-ecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 265 VITSAEFHPIYCNLLAYSSS-RGFVRLVDMR--QSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
......|+|+| +.|+..+. ++...+|.+. +++.. +. +.. .......|+|||++|+.
T Consensus 285 ~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g---------------~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 285 IDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTG---------------SYNTSPRISPDGKLLAY 344 (427)
T ss_pred CCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCceE----EEecCC---------------CCcCceEECCCCCEEEE
Confidence 56678899999 77766554 4666666553 33211 11 111 22346789999999987
Q ss_pred Eec----CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC-c--EEEEEcCCCC
Q 010933 341 RDY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-L--LRIFSHGVGS 413 (497)
Q Consensus 341 ~~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg-~--i~vw~~~~~~ 413 (497)
.+. ..|.+||+.. ++.. .+...... ....|+|||++|+..+.++ . +++.++. +
T Consensus 345 ~s~~~g~~~I~v~d~~~-g~~~-~lt~~~~~----------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g- 404 (427)
T PRK02889 345 ISRVGGAFKLYVQDLAT-GQVT-ALTDTTRD----------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G- 404 (427)
T ss_pred EEccCCcEEEEEEECCC-CCeE-EccCCCCc----------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-
Confidence 542 2699999975 4433 33222111 3689999999988777543 3 5555553 3
Q ss_pred cceEEEeccCcceeeeEeec
Q 010933 414 AGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 414 ~~~~~~~~~~~~v~~~~~~~ 433 (497)
.....+..+.+.+...+++|
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CceEEeecCCCCCCCCccCC
Confidence 34455666666777777766
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=1.5e-13 Score=124.78 Aligned_cols=137 Identities=19% Similarity=0.263 Sum_probs=100.0
Q ss_pred CCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCc-------------eeeEEeecC-------CCccCCCCCCeEEEEE
Q 010933 214 DFNINSISNNSDCE-TFVSA-DDLRINLWNLEISD-------------QCFNIVDMK-------PSNMDDLTEVITSAEF 271 (497)
Q Consensus 214 ~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~-------------~~~~~~~~~-------~~~~~~~~~~i~~~~~ 271 (497)
...|+++.|-|.+. .++++ .+|.+++||..... ..+.+...+ ...+..-+..|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 36799999988444 44556 89999999764211 111111000 0112223468899999
Q ss_pred eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEe
Q 010933 272 HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWD 350 (497)
Q Consensus 272 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd 350 (497)
+||| ++||+.+.||.+||||+.+.++.. ++.. +-+...|++|||||+||++|. |.-|.||.
T Consensus 299 S~DG-~~LA~VSqDGfLRvF~fdt~eLlg----~mkS-------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 299 SPDG-KYLATVSQDGFLRIFDFDTQELLG----VMKS-------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred cCCC-ceEEEEecCceEEEeeccHHHHHH----HHHh-------------hccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 9999 999999999999999999866542 2221 225699999999999999984 59999999
Q ss_pred cCCCCceeeeeeecccccc
Q 010933 351 IRMDSTPVATFKIHEHLRP 369 (497)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~ 369 (497)
+.. .+.+.+-.+|..+|.
T Consensus 361 f~e-rRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 361 FEE-RRVVARGQGHKSWVS 378 (636)
T ss_pred ecc-ceEEEecccccccee
Confidence 985 899999999999873
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.6e-13 Score=129.44 Aligned_cols=214 Identities=12% Similarity=0.118 Sum_probs=137.6
Q ss_pred CCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCC
Q 010933 212 AHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRG 286 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg 286 (497)
.+...+.+.+|+|||+.|+.. .+..|++|++. +++...+ .........++|+|+| +.|+.. +.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~~~l--------~~~~~~~~~~~~SPDG-~~La~~~~~~g 265 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQV--------ASFPRHNGAPAFSPDG-SKLAFALSKTG 265 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCeEEc--------cCCCCCcCCeEECCCC-CEEEEEEcCCC
Confidence 445678899999999998863 24579999988 4443332 1222334468999999 766654 4454
Q ss_pred --eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEE--ecCCCCceeee
Q 010933 287 --FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLW--DIRMDSTPVAT 360 (497)
Q Consensus 287 --~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lw--d~~~~~~~~~~ 360 (497)
.|++||+.+++.. +.... ...+....|+|||+.|+..++ +...|| |+.. + ....
T Consensus 266 ~~~I~~~d~~tg~~~----~lt~~--------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-g-~~~~ 325 (429)
T PRK03629 266 SLNLYVMDLASGQIR----QVTDG--------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-G-APQR 325 (429)
T ss_pred CcEEEEEECCCCCEE----EccCC--------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-C-CeEE
Confidence 5889999876532 22111 234678999999998877654 444555 5543 3 3334
Q ss_pred eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCc
Q 010933 361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRA 437 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 437 (497)
+....... ....|+|||++|+..+.+ ..|.+||+.++.. ..+... .......|+| |+
T Consensus 326 lt~~~~~~---------------~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt~~-~~~~~p~~Sp--DG 385 (429)
T PRK03629 326 ITWEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLTDT-FLDETPSIAP--NG 385 (429)
T ss_pred eecCCCCc---------------cCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--EEeCCC-CCCCCceECC--CC
Confidence 43222211 368999999999876653 3588899987743 233321 2344677887 77
Q ss_pred ccccccceeEeeccCc--eec---CCCCCcccccccCCCeEEEEEecC
Q 010933 438 RRSSLSNLTRGLYRQA--HEN---SSSGHHELSYNLSSKLLHLAWHPT 480 (497)
Q Consensus 438 ~~~~~~~l~~~~~d~~--~iw---~~~~~~~~~~~~~~~i~~l~~~p~ 480 (497)
+. ++..+.++. .++ ..++....+..+...+...+|+|-
T Consensus 386 ~~-----i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 386 TM-----VIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CE-----EEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 77 777777765 333 334445556667888999999984
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.2e-12 Score=126.66 Aligned_cols=211 Identities=12% Similarity=0.033 Sum_probs=134.9
Q ss_pred cceeEEEEEecCCCCEEEEEeC---CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+.+.+| +|||+.|+..+. +..|.+||+.+++...+
T Consensus 202 ~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-------------------------------------- 241 (435)
T PRK05137 202 SLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQRELV-------------------------------------- 241 (435)
T ss_pred CCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCcEEEe--------------------------------------
Confidence 77999999 689999888763 46899999887663321
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCC--eEEEEeCccCceeeEEeecCCCccCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
..+...+...+|+|+|+.|+. . .++ .|++||+. ++.... +..+
T Consensus 242 ------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------Lt~~ 288 (435)
T PRK05137 242 ------------------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-SGTTTR--------LTDS 288 (435)
T ss_pred ------------------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-CCceEE--------ccCC
Confidence 233445667899999998865 3 454 47777887 444333 3445
Q ss_pred CCCeEEEEEeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
........|+|+| +.|+..+. +| .|+++|+..++.. +.... ...+....|+|+|++|+
T Consensus 289 ~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~--------------~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 289 PAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR----RISFG--------------GGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE----EeecC--------------CCcccCeEECCCCCEEE
Confidence 5556778999999 77777664 33 6888887765432 11111 13456788999999998
Q ss_pred EEec----CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC------CcEEEEEc
Q 010933 340 SRDY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS------NLLRIFSH 409 (497)
Q Consensus 340 ~~~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d------g~i~vw~~ 409 (497)
.... ..|.+||+.. + ....+..... . ....|+|||+.|+..+.+ ..|+++++
T Consensus 350 ~~~~~~~~~~i~~~d~~~-~-~~~~lt~~~~-~---------------~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDG-S-GERILTSGFL-V---------------EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred EEEcCCCceEEEEEECCC-C-ceEeccCCCC-C---------------CCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 7532 3678888753 2 2333321111 1 368999999998765543 25778887
Q ss_pred CCCCcceEEEeccCcceeeeEeec
Q 010933 410 GVGSAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~~~~~~~ 433 (497)
..+.. ..+. ..+.+...+|+|
T Consensus 412 ~g~~~--~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 412 TGRNE--REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCce--EEcc-CCCCccCcccCC
Confidence 65432 3333 233345555554
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=1e-11 Score=105.94 Aligned_cols=162 Identities=15% Similarity=0.228 Sum_probs=114.6
Q ss_pred CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC-CcEEEEEeC-CCeEEE
Q 010933 213 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-CNLLAYSSS-RGFVRL 290 (497)
Q Consensus 213 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~-dg~i~v 290 (497)
-..+|.++.+.++ .|++.-++.|++|.....-+.+..++.. ... ... ++..|.. ..+||.-+. -|.|+|
T Consensus 93 f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~----~NP-kGl--C~~~~~~~k~~LafPg~k~GqvQi 163 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR----SNP-KGL--CSLCPTSNKSLLAFPGFKTGQVQI 163 (346)
T ss_pred eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc----cCC-Cce--EeecCCCCceEEEcCCCccceEEE
Confidence 3568888888765 6777788899999988444444443211 111 112 3334432 144554443 689999
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccccc
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLR 368 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~ 368 (497)
-|+...+.- ....+..|.+.|.|++++-+|..+|+++. --|||||..+ +.++.+++......
T Consensus 164 ~dL~~~~~~---------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A 227 (346)
T KOG2111|consen 164 VDLASTKPN---------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRA 227 (346)
T ss_pred EEhhhcCcC---------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchh
Confidence 999764321 12334668899999999999999999965 4679999997 88888876444322
Q ss_pred ccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
++.+++|||++.+||+.|+.|+++||.+...
T Consensus 228 -------------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 228 -------------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -------------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 2369999999999999999999999999864
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.6e-13 Score=129.32 Aligned_cols=212 Identities=15% Similarity=0.119 Sum_probs=135.2
Q ss_pred cceeEEEEEecCCCCEEEEEeC---CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+.+.+| +||++.|+.++. +..|.+|++.+++...+
T Consensus 204 ~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-------------------------------------- 243 (433)
T PRK04922 204 EPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQRELV-------------------------------------- 243 (433)
T ss_pred CccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 66889999 789999998863 34688899877663321
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCC--eEEEEeCccCceeeEEeecCCCccCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
........+.+|+|+|+.++. . .++ .|++||+. ++.... +..+
T Consensus 244 ------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-~g~~~~--------lt~~ 290 (433)
T PRK04922 244 ------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-SRQLTR--------LTNH 290 (433)
T ss_pred ------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-CCCeEE--------CccC
Confidence 122233446899999998764 3 444 69999988 444333 3344
Q ss_pred CCCeEEEEEeCCCCcEEEEEeC-CCe--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
.......+|+|+| +.|+..+. +|. |.++|+.+++.. + +.. +......++|+|+|++|+
T Consensus 291 ~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~----~-lt~-------------~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 291 FGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAE----R-LTF-------------QGNYNARASVSPDGKKIA 351 (433)
T ss_pred CCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeE----E-eec-------------CCCCccCEEECCCCCEEE
Confidence 4455678999999 77776664 444 666676665421 1 111 012345689999999998
Q ss_pred EEe-c---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCC
Q 010933 340 SRD-Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVG 412 (497)
Q Consensus 340 ~~~-~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~ 412 (497)
..+ + ..|.+||+.. ++.. .+.... .. ....|+|||++|+..+.+ +.|+++++..+
T Consensus 352 ~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~~-~~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLST-GSVR-TLTPGS-LD---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEECCCCceeEEEEECCC-CCeE-ECCCCC-CC---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 753 2 3699999975 4433 332211 11 358999999988876653 45777777533
Q ss_pred CcceEEEeccCcceeeeEeec
Q 010933 413 SAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 413 ~~~~~~~~~~~~~v~~~~~~~ 433 (497)
....+..+.+.+..++|+|
T Consensus 414 --~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 --VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --ceEEcccCCCCCCCCccCC
Confidence 3355555555566666654
No 224
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.1e-11 Score=113.61 Aligned_cols=332 Identities=11% Similarity=0.117 Sum_probs=198.3
Q ss_pred cchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccc
Q 010933 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTE 92 (497)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (497)
+|.....+...+..+...-..+.+..++|++|+++|.+. +..++|++...+.. .+..
T Consensus 15 l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~----------------------~lt~ 71 (566)
T KOG2315|consen 15 LFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKV----------------------VLCV 71 (566)
T ss_pred EeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcE----------------------EEEe
Confidence 455544444333333322245578899999999998876 56899999877531 1111
Q ss_pred ccccCcccccccccccccceeEEEEEecCCCCEEEEE-----eC-----CccEEEeecCchheeccccCCCCCccccccc
Q 010933 93 FQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILS-----TN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENT 162 (497)
Q Consensus 93 ~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~-----s~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 162 (497)
+. ..++++.| +|.+.+|.+= .. ...+++|+++++...........
T Consensus 72 ~~---------------~~~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q-------- 126 (566)
T KOG2315|consen 72 EL---------------KKTYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ-------- 126 (566)
T ss_pred cc---------------ceeeeeee--cccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh--------
Confidence 11 23788899 6777787762 12 34577999988443222111111
Q ss_pred cccccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEE------EcC
Q 010933 163 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVS------ADD 234 (497)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~------~~d 234 (497)
.+ ....+..+..+. ....++.+.+++..... .... .-|...|..+.++|.+ ..+++ |.-
T Consensus 127 ---~~--W~~qfs~dEsl~---arlv~nev~f~~~~~f~--~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP 193 (566)
T KOG2315|consen 127 ---NG--WVPQFSIDESLA---ARLVSNEVQFYDLGSFK--TIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP 193 (566)
T ss_pred ---cC--cccccccchhhh---hhhhcceEEEEecCCcc--ceee---eeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence 11 111122222111 11236678888887621 1111 3456788888998863 34444 145
Q ss_pred CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--C---------CeEEEEEccCCccccccc
Q 010933 235 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--R---------GFVRLVDMRQSALCDHSA 303 (497)
Q Consensus 235 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d---------g~i~v~d~~~~~~~~~~~ 303 (497)
..++||.....+ ..+.+..+ ++ ....-..+.|++-|..+|+.++. | ..+++.++......
T Consensus 194 a~vri~~~~~~~-~~~~~a~k--sF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~---- 264 (566)
T KOG2315|consen 194 ASVRIYKYPEEG-QHQPVANK--SF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS---- 264 (566)
T ss_pred cEEEEecccccc-ccchhhhc--cc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE----
Confidence 689999876222 22111000 11 12333467788877445544433 3 36778777732211
Q ss_pred ceecccccccCCccccccccccccEEEEeeCCCEEEEE-e-c-CeEEEEecCCCCceeeeeeecccccccccccCCCCCc
Q 010933 304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSI 380 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (497)
-.+.. .++|.++.|+|+|+-+++. + . ..+.|||++ ++++..+.....
T Consensus 265 V~L~k--------------~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~egpR-------------- 314 (566)
T KOG2315|consen 265 VPLLK--------------EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEGPR-------------- 314 (566)
T ss_pred EecCC--------------CCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCCCc--------------
Confidence 11111 3799999999999877764 3 3 899999997 777766643322
Q ss_pred cceeEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecC
Q 010933 381 FDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENS 457 (497)
Q Consensus 381 ~~~~~~~~s~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~ 457 (497)
..+-|+|.|++|+.+|- -|.+-|||+.+.+.+ ..+.+.
T Consensus 315 ---N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-~~~~a~----------------------------------- 355 (566)
T KOG2315|consen 315 ---NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-AKFKAA----------------------------------- 355 (566)
T ss_pred ---cceEECCCCCEEEEeecCCCCCceEEEeccchhhc-cccccC-----------------------------------
Confidence 47999999999998886 578999999985333 111110
Q ss_pred CCCCcccccccCCCeEEEEEecCCCEEEEEe-------CCceEEEe
Q 010933 458 SSGHHELSYNLSSKLLHLAWHPTTNLIACAN-------GNSLFFHY 496 (497)
Q Consensus 458 ~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-------~~~~~i~~ 496 (497)
.-+-.+|+|||.++.+++ ++++.||+
T Consensus 356 -------------~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 356 -------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred -------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 224579999999998887 67899986
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.3e-13 Score=129.82 Aligned_cols=208 Identities=15% Similarity=0.197 Sum_probs=131.4
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
..+.+.+.+.+|||||+.||..+.+ ..|.+||+.+++. ..+..+.
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---------------------~~l~~~~----------- 239 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---------------------RVVANFK----------- 239 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---------------------EEeecCC-----------
Confidence 3567789999999999999887643 4699999987743 1122222
Q ss_pred cccccceeEEEEEecCCCCEEEE-EeCCccEEEeecC--chheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s-~s~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
+.+...+| +|||+.|+. .+.++...||.++ ++....+
T Consensus 240 ----g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l---------------------------------- 279 (427)
T PRK02889 240 ----GSNSAPAW--SPDGRTLAVALSRDGNSQIYTVNADGSGLRRL---------------------------------- 279 (427)
T ss_pred ----CCccceEE--CCCCCEEEEEEccCCCceEEEEECCCCCcEEC----------------------------------
Confidence 33567899 789988874 5778877777653 2221111
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCcc-CceeeEEeecCCCcc
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEI-SDQCFNIVDMKPSNM 259 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 259 (497)
..+........|+|||+.|+.. .++...+|.+.. ++....+ ++
T Consensus 280 ----------------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l------t~ 325 (427)
T PRK02889 280 ----------------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV------TF 325 (427)
T ss_pred ----------------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE------ec
Confidence 2333445567899999988764 456667776542 2222222 12
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 336 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 336 (497)
. .......+|+|+| ++|+..+.++ .|.+||+.+++.. .+.. ........|+|||+
T Consensus 326 ~--g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~-----~lt~--------------~~~~~~p~~spdg~ 383 (427)
T PRK02889 326 T--GSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQVT-----ALTD--------------TTRDESPSFAPNGR 383 (427)
T ss_pred C--CCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCCeE-----EccC--------------CCCccCceECCCCC
Confidence 2 2233467899999 8888776654 6999999877532 2211 01235679999999
Q ss_pred EEEEEec--C--eEEEEecCCCCceeeeeeeccc
Q 010933 337 HLLSRDY--M--NLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 337 ~l~~~~~--~--~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
.|+.+.+ + .+.+.++ ++.....+..+.+
T Consensus 384 ~l~~~~~~~g~~~l~~~~~--~g~~~~~l~~~~g 415 (427)
T PRK02889 384 YILYATQQGGRSVLAAVSS--DGRIKQRLSVQGG 415 (427)
T ss_pred EEEEEEecCCCEEEEEEEC--CCCceEEeecCCC
Confidence 9888642 3 3555555 3665666655444
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=3.2e-15 Score=141.99 Aligned_cols=281 Identities=17% Similarity=0.205 Sum_probs=203.2
Q ss_pred cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccc
Q 010933 86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 165 (497)
Q Consensus 86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (497)
..+.++.+.+|- .+|+|+.| +..|.++++++.|..++||.++++.+...
T Consensus 179 kmk~ikrLlgH~------------naVyca~f--Drtg~~Iitgsdd~lvKiwS~et~~~lAs----------------- 227 (1113)
T KOG0644|consen 179 KMKNIKRLLGHR------------NAVYCAIF--DRTGRYIITGSDDRLVKIWSMETARCLAS----------------- 227 (1113)
T ss_pred HHHHHHHHHhhh------------hheeeeee--ccccceEeecCccceeeeeeccchhhhcc-----------------
Confidence 345566778888 99999999 78899999999999999999888774332
Q ss_pred ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCcc
Q 010933 166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 244 (497)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~ 244 (497)
. .||.+.|+.++.+.+...++++ .|..|++|.+.
T Consensus 228 -------------------------------------------~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~- 262 (1113)
T KOG0644|consen 228 -------------------------------------------C-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP- 262 (1113)
T ss_pred -------------------------------------------C-CCCccccchhccchhhhhhhhcccCceEEEEecC-
Confidence 2 7999999999999998888888 99999999999
Q ss_pred CceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc
Q 010933 245 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 324 (497)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (497)
.+..+.+ +.+|++.|++++|+|-- +.+.||++++||.+-.. ..+...+... . ...
T Consensus 263 ~~~pvsv-------LrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~------~~y~prp~~~------~-~~~ 317 (1113)
T KOG0644|consen 263 DGAPVSV-------LRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEP------RIYVPRPLKF------T-EKD 317 (1113)
T ss_pred CCchHHH-------HhccccceeeeccCccc-----cCCCCCceEeccccccc------cccCCCCCCc------c-ccc
Confidence 6666665 78999999999999952 67889999999998211 1111000000 0 014
Q ss_pred cccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCC
Q 010933 325 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSN 402 (497)
Q Consensus 325 ~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg 402 (497)
.+.++.|..++.-++++++ +.-..|.+.. +..+.... + -+.++.| ..+.+++-.+-
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-------l~~~~~~l-----------i----f~t~ssd~~~~~~~ar~~~ 375 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQ-------LAWRSNLL-----------I----FVTRSSDLSSIVVTARNDH 375 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhH-------hhhhccce-----------E----EEeccccccccceeeeeee
Confidence 5667777778888888854 7777776542 11222110 0 1111112 24667778889
Q ss_pred cEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecC--CCCCcccccccCCCeEEEEEec
Q 010933 403 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENS--SSGHHELSYNLSSKLLHLAWHP 479 (497)
Q Consensus 403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~--~~~~~~~~~~~~~~i~~l~~~p 479 (497)
.+++|++.++..+ +.+.+|..++.-+.+.|- +.++ ..+++.||+ .||. .+-...........+..-+||+
T Consensus 376 ~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpf-n~ri-----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSq 448 (1113)
T KOG0644|consen 376 RLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPF-NPRI-----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQ 448 (1113)
T ss_pred Eeeeeecccchhh-hhhcccccceeeeeecCC-CcHh-----hhhccCCCceEeeecccCCcceeeecccceeeccccCC
Confidence 9999999998554 889999999999999995 6666 788999999 8992 2212222222244566789999
Q ss_pred CCCEEEEEe-CCceEEEe
Q 010933 480 TTNLIACAN-GNSLFFHY 496 (497)
Q Consensus 480 ~~~~la~~~-~~~~~i~~ 496 (497)
||..++... .+.+||+.
T Consensus 449 dgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 449 DGTSIALSDDHGQLYILG 466 (1113)
T ss_pred CCceEecCCCCCceEEec
Confidence 999998877 45588764
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=1.5e-13 Score=117.21 Aligned_cols=308 Identities=13% Similarity=0.137 Sum_probs=181.5
Q ss_pred CcceEEEEEcCCCCEEEEe-ecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVG-DRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
-+.|.-+.|..|..+++++ ..|+.|.+|++...+ ....++.-. +
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-----------------------w~ckIdeg~------------a 92 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-----------------------WYCKIDEGQ------------A 92 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce-----------------------eEEEeccCC------------C
Confidence 4677889999998877665 577899999997642 233444444 8
Q ss_pred ceeEEEEEecCCCCEEEE-EeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 111 KINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s-~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++.+++| +|||+.++. ...|-.|.+|.+.+.+...+.-.... + ....+.++|+.+....-.+-.-
T Consensus 93 gls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~--~-kg~~f~~dg~f~ai~sRrDCkd--------- 158 (447)
T KOG4497|consen 93 GLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN--V-KGYAFHPDGQFCAILSRRDCKD--------- 158 (447)
T ss_pred cceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEecccccC--c-eeEEECCCCceeeeeecccHHH---------
Confidence 8999999 789966554 56899999999988664432211100 0 1122333444433332111100
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE---cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
...+........++.+ .-.+-..+.+.|+|||..|+.= -+-.|+.|... -.+
T Consensus 159 ----yv~i~~c~~W~ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------------lG~ 213 (447)
T KOG4497|consen 159 ----YVQISSCKAWILLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------------LGL 213 (447)
T ss_pred ----HHHHHhhHHHHHHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeeec--------------------cce
Confidence 0000000011122222 3344567789999999887752 23333333322 346
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc--------------------------------eeccc----c
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR--------------------------------ILRDA----A 310 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------------------------------~~~~~----~ 310 (497)
..++|+|.+ ++|++|+.|+.+|+.+--+-+...+..+ ..+.| +
T Consensus 214 k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s 292 (447)
T KOG4497|consen 214 KFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES 292 (447)
T ss_pred eEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence 778999998 9999999999999865433211100000 00000 0
Q ss_pred -------cccCC------ccccccccccccEEEEeeCCCEEEEEec---CeEEEEecCCCCceeeeeeeccccccccccc
Q 010933 311 -------ESHGS------KSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 374 (497)
Q Consensus 311 -------~~~~~------~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
..+.. ..-+....-.+.-++|++|..|+++-.| +.+-+||++. .+....+. ....
T Consensus 293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avLi-Qk~p------- 363 (447)
T KOG4497|consen 293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVLI-QKHP------- 363 (447)
T ss_pred hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhhh-hccc-------
Confidence 00000 0011233456778999999999999755 8999999985 44433332 2222
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933 375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~ 433 (497)
|+.+.|+|....|+.+....++++|.......+ -.....-.|.++.+..
T Consensus 364 --------iraf~WdP~~prL~vctg~srLY~W~psg~~~V--~vP~~GF~i~~l~W~~ 412 (447)
T KOG4497|consen 364 --------IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV--GVPKKGFNIQKLQWLQ 412 (447)
T ss_pred --------eeEEEeCCCCceEEEEcCCceEEEEcCCCceEE--ecCCCCceeeeEEecC
Confidence 268999999988988888889999997653222 2222335667777766
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.2e-13 Score=128.97 Aligned_cols=207 Identities=13% Similarity=0.112 Sum_probs=131.8
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
..+...+.+.+|+|||+.||..+.+ ..|++||+.+++. ..+..+.
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---------------------~~l~~~~----------- 247 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---------------------ELVASFR----------- 247 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---------------------EEeccCC-----------
Confidence 3466789999999999999987743 4699999987643 1222222
Q ss_pred cccccceeEEEEEecCCCCEEEE-EeCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s-~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
+....++| +|||+.++. .+.++ .|.+||+.+++...+
T Consensus 248 ----g~~~~~~~--SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l---------------------------------- 287 (433)
T PRK04922 248 ----GINGAPSF--SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL---------------------------------- 287 (433)
T ss_pred ----CCccCceE--CCCCCEEEEEEeCCCCceEEEEECCCCCeEEC----------------------------------
Confidence 33456789 789987764 45555 588888877653321
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCe--EEEEeCccCceeeEEeecCCCc
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSN 258 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~ 258 (497)
..+.......+|+|+|+.|+.+ .++. |+++++. +++...+ +
T Consensus 288 ----------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-~g~~~~l------t 332 (433)
T PRK04922 288 ----------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-GGSAERL------T 332 (433)
T ss_pred ----------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEe------e
Confidence 2333344568999999988875 4554 6666665 3333222 1
Q ss_pred cCCCCCCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933 259 MDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 335 (497)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 335 (497)
. +......++|+|+| +.|+..+.++ .|.+||+.+++.. .+.. ........|+|||
T Consensus 333 ~--~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~--------------~~~~~~p~~spdG 390 (433)
T PRK04922 333 F--QGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTP--------------GSLDESPSFAPNG 390 (433)
T ss_pred c--CCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCCeE-----ECCC--------------CCCCCCceECCCC
Confidence 2 22334568999999 8887765433 6999999876532 2211 0123456899999
Q ss_pred CEEEEEec----CeEEEEecCCCCceeeeeeeccc
Q 010933 336 QHLLSRDY----MNLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 336 ~~l~~~~~----~~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
++++..++ ..|.++++. +.....+..+.+
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~--g~~~~~l~~~~g 423 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTD--GRVRQRLVSADG 423 (433)
T ss_pred CEEEEEEecCCceEEEEEECC--CCceEEcccCCC
Confidence 98877532 467777774 555566654433
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=9e-13 Score=115.24 Aligned_cols=258 Identities=14% Similarity=0.103 Sum_probs=169.8
Q ss_pred CCcceEEEEEcCCCC--EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 31 DVDIVSAIEFDKTGD--YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 31 h~~~I~~i~~sp~g~--~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
....|+.++|.-+++ .|...+.|..+..+..+...... ...-+.......
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s-----------------~~~~~~~~~l~~----------- 105 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS-----------------SLDDAKTVSLGT----------- 105 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccc-----------------cccccccccccc-----------
Confidence 456788888876553 44444456667776665543200 000011122222
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
++|-.++. . +..|++|-.+|.+.+|....+.....
T Consensus 106 -~~I~gl~~---~-dg~Litc~~sG~l~~~~~k~~d~hss---------------------------------------- 140 (412)
T KOG3881|consen 106 -KSIKGLKL---A-DGTLITCVSSGNLQVRHDKSGDLHSS---------------------------------------- 140 (412)
T ss_pred -ccccchhh---c-CCEEEEEecCCcEEEEeccCCccccc----------------------------------------
Confidence 66777776 2 34788888899999999875542100
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEE-EEE-cC--CeEEEEeCccCceeeEEeecCC--CccCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DD--LRINLWNLEISDQCFNIVDMKP--SNMDDL 262 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d--~~i~iwd~~~~~~~~~~~~~~~--~~~~~~ 262 (497)
.+..+ .....+..+.-++.-..| ++| .. ..+.+||++.. .+++..|. ...-+.
T Consensus 141 ----------------~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 141 ----------------KLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGL 199 (412)
T ss_pred ----------------cceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCccccc
Confidence 00000 112344455555544444 556 66 89999999844 34443331 111112
Q ss_pred --CCCeEEEEEeCC--CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEE
Q 010933 263 --TEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 338 (497)
Q Consensus 263 --~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 338 (497)
.-+++++.|-+. . ..||+++.-+.+|+||.+.++... ..+.. -..+++++...|+|+++
T Consensus 200 rVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV---~~fd~-------------~E~~is~~~l~p~gn~I 262 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPV---AQFDF-------------LENPISSTGLTPSGNFI 262 (412)
T ss_pred eeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCcce---eEecc-------------ccCcceeeeecCCCcEE
Confidence 245678888876 5 899999999999999999775432 22221 13689999999999999
Q ss_pred EEEec-CeEEEEecCCCCceeee-eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 339 LSRDY-MNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 339 ~~~~~-~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
++|.. +.+..||++. ++.+.. +++..+.+ +++..+|..++||++|-|..++|+|+++.+.+
T Consensus 263 y~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi---------------rsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 263 YTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI---------------RSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred EEecccchhheecccC-ceeeccccCCccCCc---------------ceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99976 9999999997 666655 77777654 68999999999999999999999999985443
No 230
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=8.9e-11 Score=102.52 Aligned_cols=292 Identities=11% Similarity=0.162 Sum_probs=185.0
Q ss_pred ccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecC--CccccchhhhhhhcccCCCCCCc
Q 010933 12 LEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVG--GKNHISRSELEKQMDFTSTSHPE 86 (497)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (497)
..|.+...-++....+.+.+.+.++-++|+|++++|.++-.+ |.|--|.++. |+. .
T Consensus 19 ~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-------------------t 79 (346)
T COG2706 19 YVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-------------------T 79 (346)
T ss_pred EEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-------------------E
Confidence 357766555677777777888999999999999999888654 6788887765 433 0
Q ss_pred ccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccc
Q 010933 87 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLL 164 (497)
Q Consensus 87 ~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (497)
+.....+.++. -+.++. ++++++++++. .-|.|.++.+.. |.+......-.
T Consensus 80 ~ln~~~~~g~~--------------p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~----------- 132 (346)
T COG2706 80 FLNRQTLPGSP--------------PCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK----------- 132 (346)
T ss_pred EeeccccCCCC--------------CeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeee-----------
Confidence 11111222222 367788 78999999986 568999998854 44332211100
Q ss_pred cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeC
Q 010933 165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNL 242 (497)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~ 242 (497)
+.... +-. ......+....+.|+++++++. .-.+|.+|++
T Consensus 133 -------------------------------h~g~~----p~~---rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 133 -------------------------------HTGSG----PHE---RQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred -------------------------------cCCCC----CCc---cccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 00000 000 1122336678899999999886 6678999999
Q ss_pred ccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCcccccc
Q 010933 243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 321 (497)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (497)
. .++..... +..+ ......+.|.|+|++ ++.....+ +++|-+|......-.. ..+..+...+.. |.+
T Consensus 175 ~-dg~L~~~~---~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~---~~lQ~i~tlP~d---F~g 242 (346)
T COG2706 175 D-DGKLTPAD---PAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKF---EELQTIDTLPED---FTG 242 (346)
T ss_pred c-cCcccccc---cccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceE---EEeeeeccCccc---cCC
Confidence 8 44433221 1123 344566999999999 77666655 9999999988741111 111111111111 111
Q ss_pred ccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeeccc-ccccccccCCCCCccceeEEEEcCCCCEEEEE
Q 010933 322 IIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEH-LRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 398 (497)
Q Consensus 322 ~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 398 (497)
..+..++.++|||++|.++.- ..|-+|.+...+..+........ ... -+.+.|++++++|+++
T Consensus 243 -~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~-------------PR~F~i~~~g~~Liaa 308 (346)
T COG2706 243 -TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF-------------PRDFNINPSGRFLIAA 308 (346)
T ss_pred -CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC-------------CccceeCCCCCEEEEE
Confidence 356788999999999999843 79999988765444433322211 110 0589999999999998
Q ss_pred eCC-CcEEEEEcCCCC
Q 010933 399 SYS-NLLRIFSHGVGS 413 (497)
Q Consensus 399 ~~d-g~i~vw~~~~~~ 413 (497)
+++ ..|.+|.++...
T Consensus 309 ~q~sd~i~vf~~d~~T 324 (346)
T COG2706 309 NQKSDNITVFERDKET 324 (346)
T ss_pred ccCCCcEEEEEEcCCC
Confidence 875 579999887543
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.8e-12 Score=112.21 Aligned_cols=242 Identities=12% Similarity=0.147 Sum_probs=148.7
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933 215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 293 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~ 293 (497)
..+..++|++.-..++++ .|..|++||-+. . +...+ -...+..|++++|-|.+...|++|...| |.+|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t-~pt~L------ks~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-T-CPTKL------KSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-C-CCcee------cchhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 356778999876677777 999999999773 2 22211 1234578999999999877888888776 889976
Q ss_pred cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceeeee-eeccccccc
Q 010933 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVATF-KIHEHLRPK 370 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~~~-~~~~~~~~~ 370 (497)
..........+.+.. ........++| .+|++|.|.+||..+++++ +..|.|||..+ +..+... .+..+.
T Consensus 170 s~tln~~r~~~~~s~---~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg~--- 241 (445)
T KOG2139|consen 170 SRTLNANRNIRMMST---HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGGF--- 241 (445)
T ss_pred Ccccccccccccccc---cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCce---
Confidence 542211111111111 11111222344 7899999999999999985 48999999987 4433333 222221
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccc-----ccccce
Q 010933 371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR-----SSLSNL 445 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~l 445 (497)
.-+.||||+.+|+++.-|+..++|+....-.. ....-..+.|...+++| .|++ ++.+.+
T Consensus 242 -------------slLkwSPdgd~lfaAt~davfrlw~e~q~wt~-erw~lgsgrvqtacWsp--cGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 242 -------------SLLKWSPDGDVLFAATCDAVFRLWQENQSWTK-ERWILGSGRVQTACWSP--CGSFLLFACSGSPRL 305 (445)
T ss_pred -------------eeEEEcCCCCEEEEecccceeeeehhccccee-cceeccCCceeeeeecC--CCCEEEEEEcCCceE
Confidence 46999999999999999999999965432121 11122234788888888 5554 011112
Q ss_pred eEeeccCc-eecC-CCC-----Cccc------cc---ccCCCeEEEEEecCCCEEEEEeC
Q 010933 446 TRGLYRQA-HENS-SSG-----HHEL------SY---NLSSKLLHLAWHPTTNLIACANG 489 (497)
Q Consensus 446 ~~~~~d~~-~iw~-~~~-----~~~~------~~---~~~~~i~~l~~~p~~~~la~~~~ 489 (497)
.+...++. -+.. ... .+.+ .. -.-+.+.+|+|.|.|.+||+.-.
T Consensus 306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 22222222 1111 000 0000 00 12357889999999999998653
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=3.9e-13 Score=122.08 Aligned_cols=190 Identities=13% Similarity=0.044 Sum_probs=132.8
Q ss_pred CCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccc--
Q 010933 223 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC-- 299 (497)
Q Consensus 223 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-- 299 (497)
.+.+--++.| .-|.|.+.|... ....+.+.. ...-.+..++++.|-|.++..++++-.+|.+++||....--.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh-hHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 4567778889 899999998762 222221110 111234789999999988788999999999999987421000
Q ss_pred -----ccccceeccc----ccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccc
Q 010933 300 -----DHSARILRDA----AESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRP 369 (497)
Q Consensus 300 -----~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~ 369 (497)
.+.-..|..+ .....+...+.--.+.|+..+|+|||++||+- .||.+||||..+ .+++..++..-+..
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGGL- 335 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGGL- 335 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccce-
Confidence 0000001100 00001111122234689999999999999996 569999999986 66666666554432
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933 370 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~ 433 (497)
++++|||||+||++|++|-.|.||.+... .+...-++|+..|..++|-|
T Consensus 336 --------------LCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 --------------LCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred --------------EEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 68999999999999999999999999876 45588899999999999985
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=3.3e-11 Score=112.38 Aligned_cols=319 Identities=12% Similarity=0.086 Sum_probs=172.2
Q ss_pred CEE-EEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCC
Q 010933 45 DYL-AVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG 123 (497)
Q Consensus 45 ~~l-asg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~ 123 (497)
+++ ++-..+|.|.+.|..+.+. +.++.... +.-..+.| ++|+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~-----------------------~~~i~~~~------------~~h~~~~~--s~Dg 48 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV-----------------------VARIPTGG------------APHAGLKF--SPDG 48 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE-----------------------EEEEE-ST------------TEEEEEE---TT-S
T ss_pred cEEEEEecCCCEEEEEECCCCeE-----------------------EEEEcCCC------------CceeEEEe--cCCC
Confidence 444 4455689999999887643 55555433 22334567 7999
Q ss_pred CEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccc
Q 010933 124 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 203 (497)
Q Consensus 124 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (497)
+++++++.|+.|.++|+.+++.....
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i------------------------------------------------------ 74 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATI------------------------------------------------------ 74 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEE------------------------------------------------------
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEE------------------------------------------------------
Confidence 99999999999999999988744321
Q ss_pred eeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE
Q 010933 204 RCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 281 (497)
Q Consensus 204 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 281 (497)
.-.....++++++||++++++ ..+.+.++|.+ +.+.++.+.............+.++..+|..+.+++.
T Consensus 75 --------~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 75 --------KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp --------E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred --------ecCCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 112245689999999999876 79999999998 4555665543322222345677888888888334444
Q ss_pred EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceee
Q 010933 282 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA 359 (497)
Q Consensus 282 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~ 359 (497)
.-..+.|.+.|....+... .+.+.. ........|+|+++|++++. .+.|-++|.++ ++.+.
T Consensus 146 lkd~~~I~vVdy~d~~~~~--~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~ 208 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKNLK--VTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVA 208 (369)
T ss_dssp ETTTTEEEEEETTTSSCEE--EEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEE
T ss_pred EccCCeEEEEEeccccccc--eeeecc--------------cccccccccCcccceeeecccccceeEEEeecc-ceEEE
Confidence 4556889888877653221 011111 13466789999999988863 38999999986 66665
Q ss_pred eeeecc----cccccccccCCCCCccceeEEEEc--CCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933 360 TFKIHE----HLRPKLCDLYNNDSIFDKFECSVS--GDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 360 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~ 433 (497)
.+.... .....+.++ . ....|. ..+...++.-....+.+|+..+.+.+ ..+.....+ .-+..+|
T Consensus 209 ~i~~g~~p~~~~~~~~php-----~---~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv-~~I~~~G~g-lFi~thP 278 (369)
T PF02239_consen 209 LIDTGKKPHPGPGANFPHP-----G---FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV-KTIPTQGGG-LFIKTHP 278 (369)
T ss_dssp EEE-SSSBEETTEEEEEET-----T---TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE-EEEE-SSSS---EE--T
T ss_pred EeeccccccccccccccCC-----C---cceEEeeccccceecccccCCccccchhhcCeEE-EEEECCCCc-ceeecCC
Confidence 554321 111000000 0 122232 22333323333345667787776444 666665555 4555566
Q ss_pred CCCcccccccceeEe---ecc-Cc-eecCCCCCc--ccc-cccCCCeEEEEEecCCCEEEEEe--CC-ceEEEeC
Q 010933 434 APRARRSSLSNLTRG---LYR-QA-HENSSSGHH--ELS-YNLSSKLLHLAWHPTTNLIACAN--GN-SLFFHYA 497 (497)
Q Consensus 434 ~~~~~~~~~~~l~~~---~~d-~~-~iw~~~~~~--~~~-~~~~~~i~~l~~~p~~~~la~~~--~~-~~~i~~~ 497 (497)
++++ +... +.+ +. .++....+. ... ......+.++.|+++|+.+-++. .+ .+.||.+
T Consensus 279 --~s~~-----vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 279 --DSRY-----VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp --T-SE-----EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred --CCcc-----EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 4444 3333 222 22 444222221 111 12234599999999999866555 33 5888753
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.8e-10 Score=100.63 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=114.1
Q ss_pred eEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCC----------eEEEEEeCCCCcEEEEEeC-
Q 010933 218 NSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV----------ITSAEFHPIYCNLLAYSSS- 284 (497)
Q Consensus 218 ~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~l~~~~~- 284 (497)
..++++++|++++++ ..|.|.++-++..+.....+. ...|.+. ++...+.|++ ++|++..-
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeecCCCCCCccccCCccceeeeCCCC-CEEEEeecC
Confidence 678999999999988 789999999975554443322 1223333 8899999999 88887755
Q ss_pred CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeee
Q 010933 285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~ 362 (497)
-.+|.+|++..|.+.......+.. ...-+.|.|+|++++..+-.+ ++|.+|........+..++
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~--------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKP--------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred CceEEEEEcccCccccccccccCC--------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 357999999987654322111111 256789999999999887654 9999999976334444444
Q ss_pred ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCC
Q 010933 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 412 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~ 412 (497)
.+...-. +..+.... -.+..++||++|.++.. ...|-+|.+...
T Consensus 232 ~i~tlP~---dF~g~~~~---aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 232 TIDTLPE---DFTGTNWA---AAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred eeccCcc---ccCCCCce---eEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 3322110 01111111 47899999999988775 457888887754
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=2.4e-12 Score=108.83 Aligned_cols=117 Identities=14% Similarity=0.292 Sum_probs=88.1
Q ss_pred CCCCeeEEEeCCCCCEEEE--E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CC
Q 010933 213 HDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RG 286 (497)
Q Consensus 213 h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg 286 (497)
..++|.+++|+|+|+.|+. | .++.|.+||++ ...... + +...+..+.|+|+| ++|++++. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCc
Confidence 3456999999999998765 5 67899999997 333332 2 34667889999999 99998875 46
Q ss_pred eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-------cCeEEEEecCCCCceee
Q 010933 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-------YMNLKLWDIRMDSTPVA 359 (497)
Q Consensus 287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-------~~~i~lwd~~~~~~~~~ 359 (497)
.|.+||+++.+.+ ...+. ..++.++|+|+|++++++. |+.++||+.. |+.+.
T Consensus 126 ~l~~wd~~~~~~i----~~~~~---------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~ 184 (194)
T PF08662_consen 126 DLEFWDVRKKKKI----STFEH---------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLY 184 (194)
T ss_pred EEEEEECCCCEEe----ecccc---------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeE
Confidence 7999999976544 22222 3478999999999999863 5788999985 66665
Q ss_pred eee
Q 010933 360 TFK 362 (497)
Q Consensus 360 ~~~ 362 (497)
...
T Consensus 185 ~~~ 187 (194)
T PF08662_consen 185 KKP 187 (194)
T ss_pred ecc
Confidence 543
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=6.8e-12 Score=121.42 Aligned_cols=214 Identities=12% Similarity=0.043 Sum_probs=133.2
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE----cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE-EEeCC
Q 010933 211 HAHDFNINSISNNSDCETFVSA----DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR 285 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d 285 (497)
..|...+.+.+|+|||+.|+.. .+..|++||+. ++.... +..+...+...+|+|+| +.|+ +.+.+
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~-~g~~~~--------l~~~~g~~~~~~~SPDG-~~la~~~~~~ 267 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE-TGQREL--------VGNFPGMTFAPRFSPDG-RKVVMSLSQG 267 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC-CCcEEE--------eecCCCcccCcEECCCC-CEEEEEEecC
Confidence 4667789999999999988875 24689999998 444333 23445567788999999 6554 55555
Q ss_pred Ce--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec----CeEEEEecCCCCceee
Q 010933 286 GF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVA 359 (497)
Q Consensus 286 g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~lwd~~~~~~~~~ 359 (497)
+. |.+||+.+++.. .+.. +........|+|||+.|+..++ ..|+++|+.. + ...
T Consensus 268 g~~~Iy~~d~~~~~~~-----~Lt~-------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~-~~~ 327 (435)
T PRK05137 268 GNTDIYTMDLRSGTTT-----RLTD-------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-S-NPR 327 (435)
T ss_pred CCceEEEEECCCCceE-----EccC-------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-C-CeE
Confidence 54 777788776432 2221 1234567899999999887653 3678888753 3 334
Q ss_pred eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCC
Q 010933 360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 436 (497)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 436 (497)
.+..+.... ....|+|||++|+..+.+ ..|.+|++..+.. ..+.. ...+..+.|+| +
T Consensus 328 ~lt~~~~~~---------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~~~~~p~~sp--D 387 (435)
T PRK05137 328 RISFGGGRY---------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GFLVEGPTWAP--N 387 (435)
T ss_pred EeecCCCcc---------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CCCCCCCeECC--C
Confidence 443322211 368899999999876653 3688889865532 22322 23466788888 6
Q ss_pred cccccccceeEeeccC-----ceec--CC-CCCcccccccCCCeEEEEEecC
Q 010933 437 ARRSSLSNLTRGLYRQ-----AHEN--SS-SGHHELSYNLSSKLLHLAWHPT 480 (497)
Q Consensus 437 ~~~~~~~~l~~~~~d~-----~~iw--~~-~~~~~~~~~~~~~i~~l~~~p~ 480 (497)
++. ++..+.++ ..+| .. +.... .......+...+|+|.
T Consensus 388 G~~-----i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 388 GRV-----IMFFRQTPGSGGAPKLYTVDLTGRNER-EVPTPGDASDPAWSPL 433 (435)
T ss_pred CCE-----EEEEEccCCCCCcceEEEEECCCCceE-EccCCCCccCcccCCC
Confidence 665 55443322 2455 22 22222 2223445677788774
No 237
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.4e-12 Score=119.19 Aligned_cols=257 Identities=13% Similarity=0.187 Sum_probs=171.6
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
......|++|+....|||+|+.||.+++..+.+.........+. .......-+++.||. +
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla--------a~snLsmNQtLeGH~------------~ 72 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA--------AASNLSMNQTLEGHN------------A 72 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccc--------cccccchhhhhccCc------------c
Confidence 34678999999999999999999999999887654321111111 111334557889999 9
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.-+.| +.+.+.|-++..+|.|.+|-+..+....-..
T Consensus 73 sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMi---------------------------------------- 110 (1189)
T KOG2041|consen 73 SVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCEEMI---------------------------------------- 110 (1189)
T ss_pred eEEEEEe--ccccccccccCCCceEEEEeeecccHHHHHh----------------------------------------
Confidence 9999999 6778889999999999999998876432110
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.....+-|.+++|+.+|..++.. .||.|.+=.++ +.+.... .+++ .-...+
T Consensus 111 -------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK------eLkg--~~l~hv 162 (1189)
T KOG2041|consen 111 -------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK------ELKG--QLLAHV 162 (1189)
T ss_pred -------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch------hcch--heccce
Confidence 12345678899999999999999 99999888777 4443321 1222 123478
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccc-cccceecccccccCCccccccccccccEEEEe--------eCCCEEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFA--------NDGQHLLS 340 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--------~~g~~l~~ 340 (497)
.|++|. ..++.+-..|.+.+||....-... +....... . ..+..-...|..+.|. |+...|+.
T Consensus 163 ~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-t------g~~s~~~~kia~i~w~~g~~~~v~pdrP~lav 234 (1189)
T KOG2041|consen 163 LWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNG-T------GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV 234 (1189)
T ss_pred eecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEee-e------eeecCCCccccceeeccCccccCCCCCCEEEE
Confidence 999998 888888899999999976431110 00000000 0 0001001224445553 46677888
Q ss_pred Eec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 341 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 341 ~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
+-+ |.+.+..-.++..++..-.+.. +.+..|+++|..||.+|.+.
T Consensus 235 cy~nGr~QiMR~eND~~Pvv~dtgm~-----------------~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 235 CYANGRMQIMRSENDPEPVVVDTGMK-----------------IVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred EEcCceehhhhhcCCCCCeEEecccE-----------------eecceecCCCcEEEEccCcc
Confidence 744 8888877665455543333321 25899999999999999753
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.50 E-value=3.8e-12 Score=118.64 Aligned_cols=293 Identities=13% Similarity=0.097 Sum_probs=157.1
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 115 (497)
Q Consensus 36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l 115 (497)
..+.|+|||+++.+.+.||.|.++|+.+.+. +.+++.- .....+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-----------------------v~~i~~G-------------~~~~~i 83 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKV-----------------------VATIKVG-------------GNPRGI 83 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------------------EEEEE-S-------------SEEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------------------EEEEecC-------------CCcceE
Confidence 4478999999999999999999999988753 4444433 335778
Q ss_pred EEEecCCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc-cccccccccCcceE
Q 010933 116 RWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA-HGYHLEWTENMATK 193 (497)
Q Consensus 116 ~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 193 (497)
++ ++||++++++. .++.+.++|.++.+............ ...+.++.....++... ++....- .+.+.
T Consensus 84 ~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~------~~~~~Rv~aIv~s~~~~~fVv~lkd--~~~I~ 153 (369)
T PF02239_consen 84 AV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV------DGPESRVAAIVASPGRPEFVVNLKD--TGEIW 153 (369)
T ss_dssp EE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T------TTS---EEEEEE-SSSSEEEEEETT--TTEEE
T ss_pred EE--cCCCCEEEEEecCCCceeEeccccccceeecccccccc------cccCCCceeEEecCCCCEEEEEEcc--CCeEE
Confidence 88 68999999875 78999999998877655432211100 00111222222222222 2222211 23333
Q ss_pred EEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE
Q 010933 194 IANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF 271 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 271 (497)
+-|.... ....... ...........|+|++++++.+ .+..|-++|.. .++....++.. -..|..+...+ .
T Consensus 154 vVdy~d~--~~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~-~~k~v~~i~~g---~~p~~~~~~~~-p 225 (369)
T PF02239_consen 154 VVDYSDP--KNLKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK-TGKLVALIDTG---KKPHPGPGANF-P 225 (369)
T ss_dssp EEETTTS--SCEEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT-TTEEEEEEE-S---SSBEETTEEEE-E
T ss_pred EEEeccc--cccceee-ecccccccccccCcccceeeecccccceeEEEeec-cceEEEEeecc---ccccccccccc-c
Confidence 3343332 1121112 2334567789999999988775 78899999998 55555554332 22344443332 2
Q ss_pred eCCCCcEEE---------EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933 272 HPIYCNLLA---------YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 341 (497)
Q Consensus 272 ~~~~~~~l~---------~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 341 (497)
+|......+ +.-....+.+||....+.+ +.+.. .+.-..+..+|+++++.+.
T Consensus 226 hp~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv----~~I~~--------------~G~glFi~thP~s~~vwvd~ 287 (369)
T PF02239_consen 226 HPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV----KTIPT--------------QGGGLFIKTHPDSRYVWVDT 287 (369)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE----EEEE---------------SSSS--EE--TT-SEEEEE-
T ss_pred CCCcceEEeeccccceecccccCCccccchhhcCeEE----EEEEC--------------CCCcceeecCCCCccEEeec
Confidence 332201111 1111223445666555444 33333 1233778889999999987
Q ss_pred ---ec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC--CcEEEEEcCCCCcc
Q 010933 342 ---DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--NLLRIFSHGVGSAG 415 (497)
Q Consensus 342 ---~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d--g~i~vw~~~~~~~~ 415 (497)
.+ +.|.++|.++ .+.+.++....... +..+.|++||+++.....+ +.|.+||..+.+.+
T Consensus 288 ~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~--------------~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 288 FLNPDADTVQVIDKKT-LKVVKTITPGPGKR--------------VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp TT-SSHT-EEEEECCG-TEEEE-HHHHHT----------------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred cCCCCCceEEEEECcC-cceeEEEeccCCCc--------------EeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 34 9999999987 56666665333310 1589999999977655543 36999999998554
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=5.3e-10 Score=104.56 Aligned_cols=269 Identities=13% Similarity=0.149 Sum_probs=159.8
Q ss_pred CcceEEEEEcCCCCEEEEeec----CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDR----GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
....+.++++|++++|.+..+ ++.|..|++..... ..+.+.......
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g---------- 86 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG---------- 86 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS----------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC----------
Confidence 445577899999999988876 57999999876310 112222222111
Q ss_pred cccceeEEEEEecCCCCEEEEEe-CCccEEEeecCc-hheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
..-..++. ++++++|+++. .+|.|.++++.. +.+.....
T Consensus 87 --~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~----------------------------------- 127 (345)
T PF10282_consen 87 --SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ----------------------------------- 127 (345)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-----------------------------------
T ss_pred --CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeee-----------------------------------
Confidence 33456777 78999999986 689999999976 33322110
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCce-eeEEeecCCCccCCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ-CFNIVDMKPSNMDDL 262 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~ 262 (497)
++..... .+.. .........++.++|+|+++++. ....|.+|+++.... ......+ .+ ..
T Consensus 128 --------~~~~~g~---g~~~--~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~---~~-~~ 190 (345)
T PF10282_consen 128 --------TVRHEGS---GPNP--DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI---KV-PP 190 (345)
T ss_dssp --------EEESEEE---ESST--TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE---EC-ST
T ss_pred --------ecccCCC---CCcc--cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc---cc-cc
Confidence 0000000 0000 01234567789999999988875 677999999984432 2111100 12 34
Q ss_pred CCCeEEEEEeCCCCcEEEEE-eCCCeEEEEEcc--CCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
....+.++|+|++ +++++. ..++.|.++++. .+... ........... +.+ ......+.++|||++|.
T Consensus 191 G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~~~~~------~~~-~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 191 GSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLT--EIQTISTLPEG------FTG-ENAPAEIAISPDGRFLY 260 (345)
T ss_dssp TSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESCETT------SCS-SSSEEEEEE-TTSSEEE
T ss_pred CCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCcee--EEEEeeecccc------ccc-cCCceeEEEecCCCEEE
Confidence 4567999999999 655554 558899999998 33211 11111110000 000 12577899999999999
Q ss_pred EEe--cCeEEEEecCCC-Cce--eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 010933 340 SRD--YMNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 410 (497)
Q Consensus 340 ~~~--~~~i~lwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~ 410 (497)
++. .+.|.+|++... +++ +..+..... . -+.++++|+|++|+++.. ++.|.+|+++
T Consensus 261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~-~--------------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGK-F--------------PRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEECTTTEEEEEEECTTTTTEEEEEEEEESSS-S--------------EEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEeccCCEEEEEEEecCCCceEEEEEEeCCCC-C--------------ccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 874 389999999432 332 222322111 0 168999999999998875 6789999875
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=6.2e-12 Score=110.09 Aligned_cols=205 Identities=15% Similarity=0.153 Sum_probs=143.4
Q ss_pred EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCE
Q 010933 46 YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSM 125 (497)
Q Consensus 46 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~ 125 (497)
.|++|-.+|.+.+|..+.+... -..+..+..+ ..+..|.=++ .....
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~h-------------------ss~l~~la~g-------------~g~~~~r~~~-~~p~I 163 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLH-------------------SSKLIKLATG-------------PGLYDVRQTD-TDPYI 163 (412)
T ss_pred EEEEEecCCcEEEEeccCCccc-------------------cccceeeecC-------------CceeeeccCC-CCCce
Confidence 5778888999999998865420 1122333333 3466666642 33345
Q ss_pred EEEEeCC--ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCccc
Q 010933 126 FILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 203 (497)
Q Consensus 126 l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (497)
+++|+.. ..+++||+++.+.+... .+...+ .+ +-.+.
T Consensus 164 va~GGke~~n~lkiwdle~~~qiw~a-KNvpnD----------------------------~L--~LrVP---------- 202 (412)
T KOG3881|consen 164 VATGGKENINELKIWDLEQSKQIWSA-KNVPND----------------------------RL--GLRVP---------- 202 (412)
T ss_pred EecCchhcccceeeeecccceeeeec-cCCCCc----------------------------cc--cceee----------
Confidence 6668887 89999999877432211 111000 00 00112
Q ss_pred eeeeeeccCCCCCeeEEEeCCC--CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEE
Q 010933 204 RCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 280 (497)
Q Consensus 204 ~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 280 (497)
-.++++.|.+. ...|+++ .-+.+++||.+.+.+++.. +.-.+.+++++...|.+ ++++
T Consensus 203 -----------vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~-------fd~~E~~is~~~l~p~g-n~Iy 263 (412)
T KOG3881|consen 203 -----------VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ-------FDFLENPISSTGLTPSG-NFIY 263 (412)
T ss_pred -----------eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE-------eccccCcceeeeecCCC-cEEE
Confidence 23456777776 7889999 9999999999977777765 44557899999999999 9999
Q ss_pred EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceee
Q 010933 281 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 359 (497)
Q Consensus 281 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~ 359 (497)
+|..-+.+..||++.++.... . +.+..+.+.++..+|.++++++++ |..+||+|+++ .+++.
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~---~-------------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~ 326 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGC---G-------------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLH 326 (412)
T ss_pred EecccchhheecccCceeecc---c-------------cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhh
Confidence 999999999999999865521 1 223457899999999999999975 69999999987 55554
Q ss_pred e
Q 010933 360 T 360 (497)
Q Consensus 360 ~ 360 (497)
.
T Consensus 327 k 327 (412)
T KOG3881|consen 327 K 327 (412)
T ss_pred h
Confidence 3
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=1.1e-09 Score=102.50 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=106.7
Q ss_pred CCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecC------CCccCCCCCCeEEEEEeCCCCcEEEEEeC-C
Q 010933 215 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMK------PSNMDDLTEVITSAEFHPIYCNLLAYSSS-R 285 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d 285 (497)
.....++++|++++|+++ .+|.|.++++...+........- +..........+++.++|++ +++++... .
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCC
Confidence 345578999999999987 79999999998655444332110 11111234567899999999 76666544 5
Q ss_pred CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCC-CCce--eee
Q 010933 286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRM-DSTP--VAT 360 (497)
Q Consensus 286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~-~~~~--~~~ 360 (497)
..|.+|++............+.. .....-+.+.|+|+++++.+..+ +.|.++++.. .+.. ++.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~------------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKV------------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEEC------------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEEeCCCceEEEeecccc------------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 68999999775421111111111 01245789999999999988754 9999999982 1321 222
Q ss_pred eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 010933 361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGV 411 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~ 411 (497)
+....... ... .....++++|||++|+++.. ++.|.+|+++.
T Consensus 234 ~~~~~~~~-------~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 234 ISTLPEGF-------TGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EESCETTS-------CSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred eeeccccc-------ccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 22111100 000 01257999999999887664 67899999943
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=4.3e-13 Score=119.65 Aligned_cols=272 Identities=13% Similarity=0.118 Sum_probs=177.2
Q ss_pred eEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeE
Q 010933 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 114 (497)
Q Consensus 35 I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~ 114 (497)
-+.+.++.+|.+|+.|+..|.|-.+|+.++++ ..++... +.|.+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-----------------------~~Ei~v~-------------Etv~D 175 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-----------------------HFEINVM-------------ETVRD 175 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeeccccee-----------------------eeeeehh-------------hhhhh
Confidence 46889999999999999999999999998754 2222222 55788
Q ss_pred EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEE
Q 010933 115 VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKI 194 (497)
Q Consensus 115 l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (497)
+.|. .+. .++++.....+.|||-.+-++..+... ..+....+-+---++++++. .|.++.
T Consensus 176 v~~L--Hne-q~~AVAQK~y~yvYD~~GtElHClk~~---------------~~v~rLeFLPyHfLL~~~~~--~G~L~Y 235 (545)
T KOG1272|consen 176 VTFL--HNE-QFFAVAQKKYVYVYDNNGTELHCLKRH---------------IRVARLEFLPYHFLLVAASE--AGFLKY 235 (545)
T ss_pred hhhh--cch-HHHHhhhhceEEEecCCCcEEeehhhc---------------Cchhhhcccchhheeeeccc--CCceEE
Confidence 8885 333 345555667788888765553332211 11222223333333444433 566777
Q ss_pred EeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeC
Q 010933 195 ANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP 273 (497)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 273 (497)
-|+... +.+..+ ....+.+..++-+|-+..+-.| .+|+|.+|.........+ +..|.++|.++++.+
T Consensus 236 ~DVS~G---klVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--------iLcH~g~V~siAv~~ 303 (545)
T KOG1272|consen 236 QDVSTG---KLVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------ILCHRGPVSSIAVDR 303 (545)
T ss_pred Eeechh---hhhHHH-HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH--------HHhcCCCcceEEECC
Confidence 777643 233222 3445677788899999899999 999999999885444444 567999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCC
Q 010933 274 IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 353 (497)
Q Consensus 274 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~ 353 (497)
+| .+++|.+.|..++|||+|..... ..+.. ..+...+++|..| +||++....+.||.=..
T Consensus 304 ~G-~YMaTtG~Dr~~kIWDlR~~~ql----~t~~t--------------p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 304 GG-RYMATTGLDRKVKIWDLRNFYQL----HTYRT--------------PHPASNLSLSQKG-LLALSYGDHVQIWKDAL 363 (545)
T ss_pred CC-cEEeecccccceeEeeecccccc----ceeec--------------CCCcccccccccc-ceeeecCCeeeeehhhh
Confidence 99 99999999999999999986533 22111 1356788888655 66666667899995322
Q ss_pred CC--ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933 354 DS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 407 (497)
Q Consensus 354 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw 407 (497)
.+ ..-..+-.|.-.. .|.++.|.|-...|-.|...|.-.+.
T Consensus 364 ~~s~~~~~pYm~H~~~~-------------~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 364 KGSGHGETPYMNHRCGG-------------PVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred cCCCCCCcchhhhccCc-------------ccccceeccHHHeeeccccCCceeEe
Confidence 22 2222232332211 13588999876666666655544443
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=6.9e-11 Score=114.55 Aligned_cols=191 Identities=14% Similarity=0.137 Sum_probs=121.9
Q ss_pred cceeEEEEEecCCCCEEEEEeCC---ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+.+.+| +||+++|+.++.+ ..|.+|++.+++...+
T Consensus 190 ~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-------------------------------------- 229 (417)
T TIGR02800 190 EPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQREKV-------------------------------------- 229 (417)
T ss_pred CceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------------------
Confidence 55788889 7899999987643 4788999877653321
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cC--CeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DD--LRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
..+...+.+++|+|+|+.|+.. .+ ..|++||+. ++.... +..+
T Consensus 230 ------------------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-~~~~~~--------l~~~ 276 (417)
T TIGR02800 230 ------------------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-GKQLTR--------LTNG 276 (417)
T ss_pred ------------------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC-CCCEEE--------CCCC
Confidence 1233345568899999987653 33 368888887 343332 2334
Q ss_pred CCCeEEEEEeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
........|+|+| +.|+..+. ++ .|.++|+.+++.. .+.. +......+.|+|+|++++
T Consensus 277 ~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~-----~l~~-------------~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 277 PGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR-----RLTF-------------RGGYNASPSWSPDGDLIA 337 (417)
T ss_pred CCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE-----Eeec-------------CCCCccCeEECCCCCEEE
Confidence 4445567899999 77766654 33 5777887765421 1111 113467789999999988
Q ss_pred EEec-C---eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC---cEEEEEcC
Q 010933 340 SRDY-M---NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHG 410 (497)
Q Consensus 340 ~~~~-~---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---~i~vw~~~ 410 (497)
.+.. + .|.+||+.. +. ...+...... ....|+||+++|+..+.++ .+++.+..
T Consensus 338 ~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDG-GG-ERVLTDTGLD----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEccCCceEEEEEeCCC-CC-eEEccCCCCC----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 8643 3 788888874 32 2333222111 2578999999988777654 35555543
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=7.4e-11 Score=113.96 Aligned_cols=167 Identities=15% Similarity=0.168 Sum_probs=100.8
Q ss_pred eEEEeCCCCCEEEEE--cCCe--EEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CC--eEEE
Q 010933 218 NSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRL 290 (497)
Q Consensus 218 ~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v 290 (497)
...+|+|||+.|+.. .++. |+++|+. +++... +..+.......+|+|+| +.|+..+. ++ .|.+
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-tg~~~~--------lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIA-TKALTR--------ITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYR 334 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECC-CCCeEE--------CccCCCCccceEECCCC-CEEEEEECCCCCceEEE
Confidence 357899999988763 5664 7777877 343332 33344556778999999 76666554 34 4666
Q ss_pred EEccCCcccccccce-ecccccccCCccccccccccccEEEEeeCCCEEEEEec--C--eEEEEecCCCCceeeeeeecc
Q 010933 291 VDMRQSALCDHSARI-LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVATFKIHE 365 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~lwd~~~~~~~~~~~~~~~ 365 (497)
+|+.+++.. +. +.. ......+|+|||++|+..+. + .|.++|+.. ++. ..+....
T Consensus 335 ~dl~~g~~~----~Lt~~g---------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~~-~~lt~~~ 393 (448)
T PRK04792 335 VNLASGKVS----RLTFEG---------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GAM-QVLTSTR 393 (448)
T ss_pred EECCCCCEE----EEecCC---------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CCe-EEccCCC
Confidence 677666432 11 111 22345689999999887532 4 455667764 332 3332211
Q ss_pred cccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCc--EEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933 366 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNL--LRIFSHGVGSAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~ 433 (497)
.. ....|+|||+.|+..+. ++. +++++.+ + .....+..+.+.+...+|+|
T Consensus 394 ~d----------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 394 LD----------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CC----------------CCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCC
Confidence 11 24689999998876554 343 6777764 3 23355655555666666665
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.1e-10 Score=113.28 Aligned_cols=212 Identities=15% Similarity=0.138 Sum_probs=130.9
Q ss_pred cceeEEEEEecCCCCEEEEEeCC---ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTND---KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
..+...+| +|||+.|+..+.+ ..|.+|++.+++...+
T Consensus 199 ~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-------------------------------------- 238 (430)
T PRK00178 199 EPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-------------------------------------- 238 (430)
T ss_pred CceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc--------------------------------------
Confidence 66889999 7899999887633 3688888877664332
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCccCCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
......+....|+|+|+.|+.. .++ .|++||+. ++.... +..+
T Consensus 239 ------------------------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-~~~~~~--------lt~~ 285 (430)
T PRK00178 239 ------------------------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-SRQLSR--------VTNH 285 (430)
T ss_pred ------------------------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC-CCCeEE--------cccC
Confidence 1112234468899999988753 444 68888988 443332 3334
Q ss_pred CCCeEEEEEeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 263 TEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
........|+|+| +.|+..+. ++ .|.++|+.+++.. +.... ........|+|+|++|+
T Consensus 286 ~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~~----~lt~~--------------~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 286 PAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRAE----RVTFV--------------GNYNARPRLSADGKTLV 346 (430)
T ss_pred CCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCEE----EeecC--------------CCCccceEECCCCCEEE
Confidence 4455678899999 76666554 33 5777787766432 11111 01234578999999988
Q ss_pred EEec----CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-C--cEEEEEcCCC
Q 010933 340 SRDY----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGVG 412 (497)
Q Consensus 340 ~~~~----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g--~i~vw~~~~~ 412 (497)
.... ..|.+||+.+ ++. ..+...... ....|+|||++|+..+.+ | .|+++++...
T Consensus 347 ~~~~~~~~~~l~~~dl~t-g~~-~~lt~~~~~----------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQR-GSV-RILTDTSLD----------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEccCCceEEEEEECCC-CCE-EEccCCCCC----------------CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 7532 3688889875 433 333211111 247899999998876653 3 4666676432
Q ss_pred CcceEEEeccCcceeeeEeec
Q 010933 413 SAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 413 ~~~~~~~~~~~~~v~~~~~~~ 433 (497)
....+..+.+.+...+|+|
T Consensus 409 --~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 409 --VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred --ceEECcCCCCCcCCCccCC
Confidence 2244555555566666665
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=8.3e-11 Score=108.09 Aligned_cols=287 Identities=15% Similarity=0.162 Sum_probs=185.4
Q ss_pred ccccccccccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcc
Q 010933 101 DYLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 179 (497)
Q Consensus 101 ~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (497)
..++.+++...-+.|.. +|||+|+++.| .--.|++||+.+-.++-
T Consensus 43 eLiQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKF-------------------------------- 88 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKF-------------------------------- 88 (703)
T ss_pred HHHHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeee--------------------------------
Confidence 34556666688889998 79999987654 77899999997654321
Q ss_pred cccccccccCcceEEEeecCCccceeeeeeccCC-CCC-eeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCC
Q 010933 180 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAH-DFN-INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 256 (497)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 256 (497)
..| ... |.-.-.+.|-..++.= .|.+|.+-..- +....+ .
T Consensus 89 -------------------------------ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~hy~~-R--- 131 (703)
T KOG2321|consen 89 -------------------------------ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRHYRT-R--- 131 (703)
T ss_pred -------------------------------eecccccceeEEEeccchhhheEeecCceeeehhhc--Ceeeee-e---
Confidence 122 122 2222234444444443 67776654322 322221 0
Q ss_pred CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933 257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 336 (497)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 336 (497)
.+ ..-..++++.-. --|+.++....|+-+++..|+.+ ..+.. ..+.++++..++-..
T Consensus 132 --IP---~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL----~P~~~-------------~~~~lN~v~in~~hg 188 (703)
T KOG2321|consen 132 --IP---KFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFL----NPFET-------------DSGELNVVSINEEHG 188 (703)
T ss_pred --cC---cCCccccccCCC-ccEEEeecCcceEEEEccccccc----ccccc-------------ccccceeeeecCccc
Confidence 11 122456666544 33555555667888999999766 44443 126799999999999
Q ss_pred EEEEEe-cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 337 HLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 337 ~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
+|++|+ +|.|.+||.+. ...+.++..... +... .+ .+..-.++++.|+.+|-.+++|+.+|.+.|||+++.+.+
T Consensus 189 Lla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~-v~s~--pg-~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 189 LLACGTEDGVVEFWDPRD-KSRVGTLDAASS-VNSH--PG-GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred eEEecccCceEEEecchh-hhhheeeecccc-cCCC--cc-ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence 999997 59999999986 555555544333 1110 11 111122479999999999999999999999999998776
Q ss_pred eEEEeccCcceeeeEeecCCCcccccccceeEeeccCceec-CCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933 416 GITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 491 (497)
Q Consensus 416 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~ 491 (497)
...=.+..-||..+.|.+. +.+- .+++....-.+|| ...+........+..++.+.+-|++.++.+|-++.
T Consensus 264 ~~kdh~~e~pi~~l~~~~~-~~q~----~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDT-DQQN----KVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred eecccCCccceeeeccccc-CCCc----eEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 5555555678888888775 2222 2444333223999 33334455566677899999999999998887654
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.7e-11 Score=116.03 Aligned_cols=206 Identities=15% Similarity=0.142 Sum_probs=124.4
Q ss_pred cCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
.+...+.+..|||||++|+..+.+ ..|++||+.+++. +.+..+.++
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---------------------~~lt~~~g~---------- 263 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---------------------EKVTSFPGI---------- 263 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---------------------EEecCCCCC----------
Confidence 456688899999999999877543 2688889877643 223333322
Q ss_pred ccccceeEEEEEecCCCCEEEEE-eCCcc--EEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILS-TNDKT--IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~-s~d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
....+| +|||+.|+.. +.++. |.++|+.+++...+
T Consensus 264 -----~~~~~w--SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l----------------------------------- 301 (448)
T PRK04792 264 -----NGAPRF--SPDGKKLALVLSKDGQPEIYVVDIATKALTRI----------------------------------- 301 (448)
T ss_pred -----cCCeeE--CCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC-----------------------------------
Confidence 346789 7899988764 55665 56667666553321
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCcc
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
..+.......+|+|||+.|+.. .++ .|+++|+. +++...+ +.
T Consensus 302 ---------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-~g~~~~L------t~ 347 (448)
T PRK04792 302 ---------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-SGKVSRL------TF 347 (448)
T ss_pred ---------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEE------ec
Confidence 2233345667899999988764 444 46666666 3333322 12
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeC-CC--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 336 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 336 (497)
.+ ......+|+|+| +.|+..+. ++ .|.++|+.+++.. .+... .......|+|||+
T Consensus 348 ~g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~-----~lt~~--------------~~d~~ps~spdG~ 405 (448)
T PRK04792 348 EG--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ-----VLTST--------------RLDESPSVAPNGT 405 (448)
T ss_pred CC--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE-----EccCC--------------CCCCCceECCCCC
Confidence 22 223456899999 77766655 34 4566787776431 11110 1112347999999
Q ss_pred EEEEEe--cC--eEEEEecCCCCceeeeeeeccc
Q 010933 337 HLLSRD--YM--NLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 337 ~l~~~~--~~--~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
.|+... ++ .+++++.. +.....+..+.+
T Consensus 406 ~I~~~~~~~g~~~l~~~~~~--G~~~~~l~~~~g 437 (448)
T PRK04792 406 MVIYSTTYQGKQVLAAVSID--GRFKARLPAGQG 437 (448)
T ss_pred EEEEEEecCCceEEEEEECC--CCceEECcCCCC
Confidence 887753 23 46777763 666666655433
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=7.3e-11 Score=114.46 Aligned_cols=205 Identities=16% Similarity=0.181 Sum_probs=126.5
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 105 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 105 (497)
..+.+.+...+|||||++||..+.+ ..|.+|++.+++. +.+..+.
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---------------------~~l~~~~----------- 242 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---------------------EQITNFE----------- 242 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---------------------EEccCCC-----------
Confidence 3567788999999999999877643 3689999987743 2222222
Q ss_pred cccccceeEEEEEecCCCCEEEE-EeCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 106 LEIEEKINRVRWCAAPNGSMFIL-STNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 106 ~~~~~~i~~l~~~~s~~~~~l~s-~s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
+.+...+| +|||+.|+. .+.++ .|.+||+.++....+
T Consensus 243 ----g~~~~~~~--SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l---------------------------------- 282 (430)
T PRK00178 243 ----GLNGAPAW--SPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV---------------------------------- 282 (430)
T ss_pred ----CCcCCeEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEEc----------------------------------
Confidence 22446789 689988875 44444 577778776653321
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCc
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSN 258 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~ 258 (497)
..+........|+|+|+.|+.. .++ .|+++++. +++...+.
T Consensus 283 ----------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~-~g~~~~lt------ 327 (430)
T PRK00178 283 ----------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN-GGRAERVT------ 327 (430)
T ss_pred ----------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEee------
Confidence 2223344567899999988764 343 57777776 34333221
Q ss_pred cCCCCCCeEEEEEeCCCCcEEEEEeCC-C--eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC
Q 010933 259 MDDLTEVITSAEFHPIYCNLLAYSSSR-G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 335 (497)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 335 (497)
..+ .......|+|+| +.|+..+.+ + .|.++|+.+++. +.+.. . .......|+|||
T Consensus 328 ~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----~~lt~-~-------------~~~~~p~~spdg 385 (430)
T PRK00178 328 FVG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----RILTD-T-------------SLDESPSVAPNG 385 (430)
T ss_pred cCC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE-----EEccC-C-------------CCCCCceECCCC
Confidence 111 223457899999 777776653 3 588899887653 22211 0 112245899999
Q ss_pred CEEEEEec----CeEEEEecCCCCceeeeeeec
Q 010933 336 QHLLSRDY----MNLKLWDIRMDSTPVATFKIH 364 (497)
Q Consensus 336 ~~l~~~~~----~~i~lwd~~~~~~~~~~~~~~ 364 (497)
+.++.... ..+.++++. +.....+..+
T Consensus 386 ~~i~~~~~~~g~~~l~~~~~~--g~~~~~l~~~ 416 (430)
T PRK00178 386 TMLIYATRQQGRGVLMLVSIN--GRVRLPLPTA 416 (430)
T ss_pred CEEEEEEecCCceEEEEEECC--CCceEECcCC
Confidence 99887532 346666664 4544455443
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=8.4e-11 Score=113.96 Aligned_cols=203 Identities=15% Similarity=0.175 Sum_probs=129.2
Q ss_pred cCCcceEEEEEcCCCCEEEEeecC---CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
.+...+...+|+|||++||.++.+ ..|++||+.+++. . .+..+.
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------------~---~~~~~~--------- 233 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------------E---KVASFP--------- 233 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------------------E---EeecCC---------
Confidence 455678899999999999987654 4799999987642 1 122233
Q ss_pred ccccceeEEEEEecCCCCEEEEE-eCCc--cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILS-TNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~-s~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
+.+.+++| +||++.|+.. +.++ .|.+|++.++....+
T Consensus 234 ---~~~~~~~~--spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l----------------------------------- 273 (417)
T TIGR02800 234 ---GMNGAPAF--SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL----------------------------------- 273 (417)
T ss_pred ---CCccceEE--CCCCCEEEEEECCCCCccEEEEECCCCCEEEC-----------------------------------
Confidence 44567889 6888877654 4444 577778776553321
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCcc
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~ 259 (497)
..+........|+|+|+.|+.. .++ .|+++|+. +++... +
T Consensus 274 ---------------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~-~~~~~~--------l 317 (417)
T TIGR02800 274 ---------------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD-GGEVRR--------L 317 (417)
T ss_pred ---------------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCEEE--------e
Confidence 1222333456899999988764 333 57777776 333322 2
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCCC---eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 336 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 336 (497)
..+......+.|+|+| ++++.++.++ .|.+||+.++.. +.+.. ........|+|+|+
T Consensus 318 ~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----~~l~~--------------~~~~~~p~~spdg~ 377 (417)
T TIGR02800 318 TFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----RVLTD--------------TGLDESPSFAPNGR 377 (417)
T ss_pred ecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----EEccC--------------CCCCCCceECCCCC
Confidence 2334556788999999 8888887765 788999887532 22221 01234568999999
Q ss_pred EEEEEec----CeEEEEecCCCCceeeeeee
Q 010933 337 HLLSRDY----MNLKLWDIRMDSTPVATFKI 363 (497)
Q Consensus 337 ~l~~~~~----~~i~lwd~~~~~~~~~~~~~ 363 (497)
+|+.... ..+++.+.. ++....+..
T Consensus 378 ~l~~~~~~~~~~~l~~~~~~--g~~~~~~~~ 406 (417)
T TIGR02800 378 MILYATTRGGRGVLGLVSTD--GRFRARLPL 406 (417)
T ss_pred EEEEEEeCCCcEEEEEEECC--CceeeECCC
Confidence 8887632 345666643 555555543
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=3e-10 Score=103.10 Aligned_cols=294 Identities=11% Similarity=0.125 Sum_probs=167.5
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
.-++..+.+||.|.+|++.... .|.+|...... .+..+.. ..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~-----------------------~l~~~~~--------------~~ 73 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA-----------------------KLVRFRH--------------PD 73 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccchh-----------------------heeeeec--------------CC
Confidence 4588999999999999987765 49999865532 1333332 33
Q ss_pred eeEEEEEecCCCCEEEEEeCC---------------ccEEEeecCchheeccccCCCCCcc-ccccccccccC-------
Q 010933 112 INRVRWCAAPNGSMFILSTND---------------KTIKLWKVRDQKVKKIKEMDHFPFV-SSENTLLAEKN------- 168 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d---------------~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------- 168 (497)
|..+.| +|++.+|.+=+.. +.+.+||..++.+.........+.+ ..+..+.-+..
T Consensus 74 V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 74 VKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred ceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 888888 6888898885533 3599999999876654433322210 00110100000
Q ss_pred -ccccCC-CCCcc-----cc-cccc----cc---cCcceEEEeecCCccceeeeeeccCCCCCe----------eEEEeC
Q 010933 169 -FMNEHN-PPSFA-----HG-YHLE----WT---ENMATKIANVGNSVHARCQKVYPHAHDFNI----------NSISNN 223 (497)
Q Consensus 169 -~~~~~~-~~~~~-----~~-~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----------~~~~~~ 223 (497)
-+..+. ..+.. .+ +.+. +. ....+..|..+.......++++--.....+ ..+.|+
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence 000000 00000 00 0000 00 111245555544332222222101111110 135566
Q ss_pred CCCCEEEEE------------cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe--CCCeEE
Q 010933 224 SDCETFVSA------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVR 289 (497)
Q Consensus 224 ~~~~~l~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~ 289 (497)
+.|+.++.= .+..++|++++ ++.+.+ .....++|+..+|.|.+ +.+++.+ .+-.+.
T Consensus 232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~~i~V-------~~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s 301 (561)
T COG5354 232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ERSIPV-------EKDLKDPVHDFTWEPLS-SRFAVISGYMPASVS 301 (561)
T ss_pred cCCceEEEEEEEeeecccceeccceEEEEeec--ccccce-------eccccccceeeeecccC-CceeEEeccccccee
Confidence 666655430 12345555555 222221 12557899999999998 6665554 588899
Q ss_pred EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--c--CeEEEEecCCCCceeeeeeecc
Q 010933 290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHE 365 (497)
Q Consensus 290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~ 365 (497)
++|++.. +. ..+.. ..-+.+.|+|.+++++.++ . |.+-+||.....+++..+.+..
T Consensus 302 ~~~lr~N-l~----~~~Pe---------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n 361 (561)
T COG5354 302 VFDLRGN-LR----FYFPE---------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN 361 (561)
T ss_pred ecccccc-eE----EecCC---------------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC
Confidence 9999875 22 22222 4457788999999988853 2 9999999875344454565554
Q ss_pred cccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CCcEEEEEcCCC
Q 010933 366 HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SNLLRIFSHGVG 412 (497)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg~i~vw~~~~~ 412 (497)
. .-+.|+||++++.+... |..|.|||+...
T Consensus 362 ~-----------------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 362 T-----------------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred c-----------------eEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 3 34789999999886653 888999998754
No 251
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=2.7e-10 Score=97.40 Aligned_cols=233 Identities=12% Similarity=0.086 Sum_probs=154.6
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC------CeEE
Q 010933 216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVR 289 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~ 289 (497)
...+++|+.|...++.|.|.-.+||+.+.-++.... ......-.+..+-|-.+ .+.++|+.+ ..+-
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r------~~~~~G~~~veMLfR~N--~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASR------QFIDGGFKIVEMLFRSN--YLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhh------ccccCchhhhhHhhhhc--eEEEecCCCCCCCCCceEE
Confidence 445699999999999997777899998832211110 01111122333334332 233344332 5799
Q ss_pred EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccc
Q 010933 290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRP 369 (497)
Q Consensus 290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~ 369 (497)
|||=...+.+ ..+.- ..+|.++.+.+ ..|++.-.+.|+||....+-+.+..+.....+..
T Consensus 79 IWDD~k~~~i----~el~f--------------~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 79 IWDDLKERCI----IELSF--------------NSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG 138 (346)
T ss_pred EEecccCcEE----EEEEe--------------ccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCCCc
Confidence 9994433322 22222 35789999875 4677777799999999865677777766554321
Q ss_pred cccccCCCCCccceeEEEEcCCCCEEEEEe-CCCcEEEEEcCCCCc-ceEEEeccCcceeeeEeecCCCcccccccceeE
Q 010933 370 KLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSA-GGITVEAGKNENRKPILQAAPRARRSSLSNLTR 447 (497)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 447 (497)
+| +++=..+..+||.-| .-|.|.|-|+...+. ....+.+|.+.|.+++... +|.. +|+
T Consensus 139 -lC------------~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~--~Gt~-----vAT 198 (346)
T KOG2111|consen 139 -LC------------SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL--QGTL-----VAT 198 (346)
T ss_pred -eE------------eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC--CccE-----EEE
Confidence 11 232223445666544 469999999987655 3588999999999999988 6665 999
Q ss_pred eeccCc--eec--CCCCCcccccc--cCCCeEEEEEecCCCEEEEEeCCc-eEEEe
Q 010933 448 GLYRQA--HEN--SSSGHHELSYN--LSSKLLHLAWHPTTNLIACANGNS-LFFHY 496 (497)
Q Consensus 448 ~~~d~~--~iw--~~~~~~~~~~~--~~~~i~~l~~~p~~~~la~~~~~~-~~i~~ 496 (497)
++..|. +|| ..++.+.++.. -...|.+|+|||+..+||++++.+ +.||.
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 999999 999 44455555443 235899999999999999999655 88886
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3e-10 Score=104.30 Aligned_cols=190 Identities=14% Similarity=0.096 Sum_probs=125.4
Q ss_pred cceEEEeecCC--ccceeeeeeccCCCCCeeEEEeCCCCCEEEE---E-cC---------CeEEEEeCccCceeeEEeec
Q 010933 190 MATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCETFVS---A-DD---------LRINLWNLEISDQCFNIVDM 254 (497)
Q Consensus 190 ~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~---~-~d---------~~i~iwd~~~~~~~~~~~~~ 254 (497)
..+++|..... ......+.|+.. .=-.+.|++.|+-|+. . -| .++++.+++ +..+.-.
T Consensus 194 a~vri~~~~~~~~~~~~a~ksFFka---dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~--- 266 (566)
T KOG2315|consen 194 ASVRIYKYPEEGQHQPVANKSFFKA---DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVP--- 266 (566)
T ss_pred cEEEEeccccccccchhhhcccccc---ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEe---
Confidence 36788877622 222223344222 2235788887764432 2 23 367777777 3332211
Q ss_pred CCCccCCCCCCeEEEEEeCCCCcEEEE--EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933 255 KPSNMDDLTEVITSAEFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 332 (497)
Q Consensus 255 ~~~~~~~~~~~i~~~~~~~~~~~~l~~--~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 332 (497)
..-.++|+++.|+|++ ..|++ |-.--.+.|||++-.- + ..+.. ++-+++-|+
T Consensus 267 -----L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~-v----~df~e---------------gpRN~~~fn 320 (566)
T KOG2315|consen 267 -----LLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP-V----FDFPE---------------GPRNTAFFN 320 (566)
T ss_pred -----cCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE-e----EeCCC---------------CCccceEEC
Confidence 1247899999999999 65554 3457889999998542 1 22222 678999999
Q ss_pred eCCCEEEEEe--c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC------CC
Q 010933 333 NDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY------SN 402 (497)
Q Consensus 333 ~~g~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~------dg 402 (497)
|.|++|+.++ . |.|-+||+.+ .+++..+..... +-+.|+|||++++|++. |+
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~t-----------------t~~eW~PdGe~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANT-----------------TVFEWSPDGEYFLTATTAPRLRVDN 382 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCc-----------------eEEEEcCCCcEEEEEeccccEEecC
Confidence 9999988753 3 9999999987 888888877665 35999999999998885 78
Q ss_pred cEEEEEcCCCCcceEEEeccCc-ceeeeEeecC
Q 010933 403 LLRIFSHGVGSAGGITVEAGKN-ENRKPILQAA 434 (497)
Q Consensus 403 ~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~~~ 434 (497)
.++||+.... .+ .+.+.. +...+.+.|.
T Consensus 383 g~KiwhytG~-~l---~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 383 GIKIWHYTGS-LL---HEKMFKSELLQVEWRPF 411 (566)
T ss_pred CeEEEEecCc-ee---ehhhhhHhHhheeeeec
Confidence 8999998643 22 122222 4566666654
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=4.6e-11 Score=117.27 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=119.8
Q ss_pred eCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccc
Q 010933 222 NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 300 (497)
Q Consensus 222 ~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 300 (497)
++++.-++++| .-+.|.+|+....+... .+.+|++.|.++.++.+| .++++.|+|+.+|+|++.+.+...
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPI--------RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcc--------eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC
Confidence 45666678888 89999999987333333 378999999999999999 999999999999999999876441
Q ss_pred cccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCC
Q 010933 301 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS 379 (497)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (497)
. ..-+|...+..+.|.|+ .++++ .|-+.++|+.. +..+..+..|...
T Consensus 212 -------~---------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~------------ 259 (967)
T KOG0974|consen 212 -------C---------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK------------ 259 (967)
T ss_pred -------c---------ccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc------------
Confidence 1 12357789999999998 56665 66999999875 7777788888764
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 380 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 380 ~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
.++.++.+++...++|++.|+.+++|++..
T Consensus 260 --~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 260 --GIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred --ceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 237899999999999999999999999865
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.8e-10 Score=106.89 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=73.0
Q ss_pred CeeEEEeCCCCCEEEEE--cCCeEEEEe--CccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC---CeE
Q 010933 216 NINSISNNSDCETFVSA--DDLRINLWN--LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFV 288 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~--~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i 288 (497)
.....+|+|||+.|+.. .++...+|. +...+..... +..+...+....|+|+| +.|+..+.+ ..|
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~-------lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I 353 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL-------LTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQI 353 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE-------eccCCCCccceeECCCC-CEEEEEEcCCCCcEE
Confidence 34567999999988764 566555554 4311221221 23344566788999999 877766543 479
Q ss_pred EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e---cCeEEEEecCCCCce
Q 010933 289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---YMNLKLWDIRMDSTP 357 (497)
Q Consensus 289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---~~~i~lwd~~~~~~~ 357 (497)
.+||+.+++.. .+.. ....+....|+|||+.|+.. . ...|.++|+.. ++.
T Consensus 354 ~v~dl~~g~~~-----~Lt~-------------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~-g~~ 407 (428)
T PRK01029 354 CVYDLATGRDY-----QLTT-------------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT-KKT 407 (428)
T ss_pred EEEECCCCCeE-----EccC-------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CCE
Confidence 99999887542 2211 01245678999999988753 2 26788889874 443
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.32 E-value=3.5e-10 Score=97.69 Aligned_cols=203 Identities=10% Similarity=0.192 Sum_probs=139.6
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
..++++++++++...|++|-..|++.-+.+...-. ...+.+....|. .+
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~------------~~ 116 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ------------AR 116 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh------------cc
Confidence 57889999999999999999999999887654211 224455667788 88
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC--
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN-- 189 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 189 (497)
|..+-| +...+.+++.+.|..+.--..+.+.... ............+.+...++++
T Consensus 117 v~~~if--~~~~e~V~s~~~dk~~~~hc~e~~~~lg--------------------~Y~~~~~~t~~~~d~~~~fvGd~~ 174 (404)
T KOG1409|consen 117 VSAIVF--SLTHEWVLSTGKDKQFAWHCTESGNRLG--------------------GYNFETPASALQFDALYAFVGDHS 174 (404)
T ss_pred eeeEEe--cCCceeEEEeccccceEEEeeccCCccc--------------------ceEeeccCCCCceeeEEEEecccc
Confidence 999999 4566799999999887755555544221 1111111111111111222111
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+.+..-.+... ...++.++ .+|...+.+++|.+....+.+| .|..+.+||+- ..+-... .+.+|...|..
T Consensus 175 gqvt~lr~~~~-~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig-g~~g~~~------el~gh~~kV~~ 245 (404)
T KOG1409|consen 175 GQITMLKLEQN-GCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG-GRKGTAY------ELQGHNDKVQA 245 (404)
T ss_pred cceEEEEEeec-CCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEEecc-CCcceee------eeccchhhhhh
Confidence 12222222211 11233444 8999999999999999999999 99999999998 4444433 37899999999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCc
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSA 297 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 297 (497)
+...+.- ..+.+++.||.|-+||++..+
T Consensus 246 l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 246 LSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 9988887 899999999999999997643
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.6e-09 Score=102.44 Aligned_cols=173 Identities=15% Similarity=0.102 Sum_probs=101.3
Q ss_pred eeEEEeCCCCCEEEEE--cCC----eEEEEeCccC--ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-CCCe
Q 010933 217 INSISNNSDCETFVSA--DDL----RINLWNLEIS--DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGF 287 (497)
Q Consensus 217 v~~~~~~~~~~~l~~~--~d~----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~ 287 (497)
....+|+|||+.|+.. .+| .+.+|++... +....+ ...........+|+|+| +.|+..+ .+|.
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-------t~~~~~~~~~p~wSPDG-~~Laf~s~~~g~ 304 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-------LNEAFGTQGNPSFSPDG-TRLVFVSNKDGR 304 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-------ecCCCCCcCCeEECCCC-CEEEEEECCCCC
Confidence 3457899999988864 233 3444666521 222222 11222334577999999 7776665 4665
Q ss_pred EEEEE--ccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec----CeEEEEecCCCCceeee
Q 010933 288 VRLVD--MRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT 360 (497)
Q Consensus 288 i~v~d--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~lwd~~~~~~~~~~ 360 (497)
..+|. +.. +... +.+.. +...+....|+|||+.|+.... ..|.+||+.. ++. ..
T Consensus 305 ~~ly~~~~~~~g~~~----~~lt~-------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~ 365 (428)
T PRK01029 305 PRIYIMQIDPEGQSP----RLLTK-------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQ 365 (428)
T ss_pred ceEEEEECcccccce----EEecc-------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EE
Confidence 55554 432 1111 11211 1235678899999998887532 5799999975 443 33
Q ss_pred eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933 361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~ 433 (497)
+....... ....|+|||+.|+..+. ...|+++++..++. ..+....+.+...+|+|
T Consensus 366 Lt~~~~~~---------------~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 366 LTTSPENK---------------ESPSWAIDSLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKRFPSWGA 424 (428)
T ss_pred ccCCCCCc---------------cceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCcccCceecC
Confidence 32222111 36899999998875443 35688889887643 33333445556666765
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4e-09 Score=96.92 Aligned_cols=277 Identities=14% Similarity=0.156 Sum_probs=158.7
Q ss_pred cCCcceEEEEEcCCCCEEEEeec-----------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDR-----------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 98 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 98 (497)
.| -.|.-+.|||+.+||+|-+. ...++|||+.+|.+ .+.|.....
T Consensus 248 ~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l-----------------------krsF~~~~~ 303 (698)
T KOG2314|consen 248 YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL-----------------------KRSFPVIKS 303 (698)
T ss_pred cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch-----------------------hcceeccCC
Confidence 45 36789999999999998652 25799999999865 333332110
Q ss_pred ccccccccccccceeE-EEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCC
Q 010933 99 EFDYLKSLEIEEKINR-VRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 177 (497)
Q Consensus 99 ~~~~~~~~~~~~~i~~-l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (497)
. ..++. .+| |.|++++|-...| .|.||+.....+.........+ +..+++.+.
T Consensus 304 ~----------~~~WP~frW--S~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~g-Ir~FswsP~------------ 357 (698)
T KOG2314|consen 304 P----------YLKWPIFRW--SHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISG-IRDFSWSPT------------ 357 (698)
T ss_pred C----------ccccceEEe--ccCCceeEEeccc-eEEEEecCceeeecccccCCcc-ccCcccCCC------------
Confidence 0 22333 488 6888999887774 6999988764433222221111 222222221
Q ss_pred cccccccccccCcceEEEeecCCccc-----------eeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-------C---C
Q 010933 178 FAHGYHLEWTENMATKIANVGNSVHA-----------RCQKVYPHAHDFNINSISNNSDCETFVSA-D-------D---L 235 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-------d---~ 235 (497)
+..+-.|..+..... +.+++- .-+.-.=..+-|-.+|.+|+.- + . .
T Consensus 358 -----------~~llAYwtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 358 -----------SNLLAYWTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred -----------cceEEEEcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence 122333333322111 111110 0111111135566778887752 1 1 1
Q ss_pred eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CCeEEEEEccCCcccccccceecccccc
Q 010933 236 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAES 312 (497)
Q Consensus 236 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~~~~ 312 (497)
.+.|+.++...-.+.. ......|...+|.|.| +.+++-+. ..++.+|-+++.......++.+..
T Consensus 426 n~eIfrireKdIpve~--------velke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---- 492 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEV--------VELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---- 492 (698)
T ss_pred eEEEEEeeccCCCcee--------eecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc----
Confidence 3455665533333332 2355789999999999 66655443 357889988853322223344443
Q ss_pred cCCccccccccccccEEEEeeCCCEEEEEe----cCeEEEEecCCCCceeeeee--ecccccccccccCCCCCccceeEE
Q 010933 313 HGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFEC 386 (497)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 386 (497)
...+.+.|+|.|++++.+. .|.+.++|+.. .. ..... .|... +.+
T Consensus 493 -----------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~-~k~~~~~eh~~a----------------t~v 543 (698)
T KOG2314|consen 493 -----------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-AD-LKDTASPEHFAA----------------TEV 543 (698)
T ss_pred -----------cccceEEEcCCCcEEEEEEecccccceEEEecch-hh-hhhccCcccccc----------------ccc
Confidence 4578999999999998752 38999999863 12 22221 22221 579
Q ss_pred EEcCCCCEEEEEeCC------CcEEEEEcC
Q 010933 387 SVSGDGLHFATGSYS------NLLRIFSHG 410 (497)
Q Consensus 387 ~~s~~~~~l~s~~~d------g~i~vw~~~ 410 (497)
.|.|.|+|+++++.- .--++|+++
T Consensus 544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred eECCCCCEEEEeeehhhhccccceEEEEee
Confidence 999999999999863 344556654
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=3.2e-11 Score=124.29 Aligned_cols=219 Identities=18% Similarity=0.295 Sum_probs=155.9
Q ss_pred ccccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcc
Q 010933 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEY 87 (497)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (497)
.+..++|....--++........+-..|.++.=+|.-.+.+||+.||.+++|....+..
T Consensus 2184 ~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~--------------------- 2242 (2439)
T KOG1064|consen 2184 TPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ--------------------- 2242 (2439)
T ss_pred CcccCCccccceecccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe---------------------
Confidence 34555666553223333333334567889999999999999999999999999877643
Q ss_pred cccccccc-cCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccc
Q 010933 88 RYKTEFQS-HEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 166 (497)
Q Consensus 88 ~~~~~~~~-h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (497)
+..++. -. .+|+.++| +.+|..+..+..||.+.+|.....-.
T Consensus 2243 --v~~~rt~g~------------s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk~~--------------------- 2285 (2439)
T KOG1064|consen 2243 --VVCFRTAGN------------SRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPKPY--------------------- 2285 (2439)
T ss_pred --EEEeeccCc------------chhhhhhh--cccCCceeeeccCCceeecccCCcce---------------------
Confidence 222221 22 66899999 57888999999999999998862111
Q ss_pred cCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E---cCCeEEEEeC
Q 010933 167 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A---DDLRINLWNL 242 (497)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~---~d~~i~iwd~ 242 (497)
.. .+.|.....+..|-. ..+++ | +++.+.+||.
T Consensus 2286 ----------------------------------------~s-~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2286 ----------------------------------------TS-WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred ----------------------------------------ec-cccCCccccceeeee--hhhhccccCCCCCcccchhc
Confidence 01 156777777777765 45555 2 6889999997
Q ss_pred ccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933 243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 322 (497)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (497)
.......-+ -..|...++++++.|.. .+|++|+.+|.|++||++..++. +.+..
T Consensus 2323 l~~~~~s~v-------~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~~-------------- 2376 (2439)
T KOG1064|consen 2323 LLPPMNSLV-------HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQA-------------- 2376 (2439)
T ss_pred ccCccccee-------eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhhh--------------
Confidence 643332222 25799999999999999 99999999999999999987654 22221
Q ss_pred cccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeee
Q 010933 323 IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI 363 (497)
Q Consensus 323 ~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~ 363 (497)
++ ...++++|+. |.++||++.. -..+..+..
T Consensus 2377 --------~~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLSE-FGLLHTFPS 2408 (2439)
T ss_pred --------hh-hhheeeccCcccceEEEEccc-cchhhcCch
Confidence 33 5678888854 9999999986 556665543
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.28 E-value=5.4e-10 Score=103.42 Aligned_cols=115 Identities=16% Similarity=0.236 Sum_probs=94.3
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933 211 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 289 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 289 (497)
..|.+.|.++.++.+-.+|.++ .|+.+..|+.. ..+.+.. +......+.+++.+||+ ..+++++ +.|+
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~-------~~~~~~~~~sl~is~D~-~~l~~as--~~ik 167 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRI-------WKEQKPLVSSLCISPDG-KILLTAS--RQIK 167 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeee-------eccCCCccceEEEcCCC-CEEEecc--ceEE
Confidence 5889999999999999999998 99999999998 6666665 55667788999999999 8888876 4899
Q ss_pred EEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-----CCEEEEEec--CeEEEEecCC
Q 010933 290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY--MNLKLWDIRM 353 (497)
Q Consensus 290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~--~~i~lwd~~~ 353 (497)
+||+++++.+ ..|++ |.++|+++.|-.+ |++++++.. ..+.+|-+..
T Consensus 168 ~~~~~~kevv----~~ftg-------------h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 168 VLDIETKEVV----ITFTG-------------HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEccCceEE----EEecC-------------CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999998765 45544 6789999999887 788888643 6777787653
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=2.9e-10 Score=111.79 Aligned_cols=150 Identities=15% Similarity=0.259 Sum_probs=121.0
Q ss_pred EEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEE
Q 010933 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 117 (497)
Q Consensus 38 i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~ 117 (497)
+.++++.-++++|+.-+.|.+|+....+. .. .+.||+ +.|.++.|
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~----------------------p~-~l~GHe------------G~iF~i~~ 183 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNK----------------------PI-RLKGHE------------GSIFSIVT 183 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCC----------------------cc-eecccC------------CceEEEEE
Confidence 44577778999999999999999873321 11 578999 99999999
Q ss_pred EecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEee
Q 010933 118 CAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV 197 (497)
Q Consensus 118 ~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (497)
+.||++++++|.|+++++|++++.+.... .
T Consensus 184 --s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-----------------------------------~------------- 213 (967)
T KOG0974|consen 184 --SLDGRYIASVSDDRSIRLWPIDSREVLGC-----------------------------------T------------- 213 (967)
T ss_pred --ccCCcEEEEEecCcceeeeecccccccCc-----------------------------------c-------------
Confidence 68999999999999999999998774320 0
Q ss_pred cCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC-CCCeEEEEEeCCC
Q 010933 198 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIY 275 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~ 275 (497)
.-+|+..|+.+.+.|+ .++++ .|.+.++|+.+ ..+ .+. ..+| ...|..++..+..
T Consensus 214 ------------~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~-l~~-------y~~h~g~~iw~~~~~~~~ 270 (967)
T KOG0974|consen 214 ------------GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQ-LEV-------YDEHSGKGIWKIAVPIGV 270 (967)
T ss_pred ------------cccccceeEEEEeccc--eeEEeccceEEEEEecc-cce-ehh-------hhhhhhcceeEEEEcCCc
Confidence 1499999999999998 77777 99999999877 333 222 3444 4678999999988
Q ss_pred CcEEEEEeCCCeEEEEEccCC
Q 010933 276 CNLLAYSSSRGFVRLVDMRQS 296 (497)
Q Consensus 276 ~~~l~~~~~dg~i~v~d~~~~ 296 (497)
..+++++.|+.+++||+...
T Consensus 271 -~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 271 -IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred -eEEEeeccCcchhhhhhhcc
Confidence 89999999999999998763
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=1.3e-09 Score=92.33 Aligned_cols=158 Identities=11% Similarity=0.012 Sum_probs=113.2
Q ss_pred eeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 217 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 217 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
..++.|++.+..++++ .+|.+.+-+.. .....+. .+++.|+..+..+.|+...++++++|+.|+.+..||+|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t-~~~le~v-----q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYET-EMVLEKV-----QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecc-eeeeeec-----ccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 4578899999999999 99999855544 2222221 347899999999999988878999999999999999994
Q ss_pred CcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccc
Q 010933 296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD 373 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (497)
.+. .+|.. ...|...|.++.-+| .+.++++|++ ..|++||.++.++++..-+...+
T Consensus 198 p~~-----~i~~n----------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GG------- 255 (339)
T KOG0280|consen 198 PKT-----FIWHN----------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGG------- 255 (339)
T ss_pred Ccc-----eeeec----------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccc-------
Confidence 321 22222 133567888887776 4679999976 99999999976888766554432
Q ss_pred cCCCCCccceeEEEEcCC--CCEEEEEeCCCcEEEEEcCCC
Q 010933 374 LYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 374 ~~~~~~~~~~~~~~~s~~--~~~l~s~~~dg~i~vw~~~~~ 412 (497)
|+.+.++|. ++.|+++-.+ -.+|-+.+.+
T Consensus 256 ---------VWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~ 286 (339)
T KOG0280|consen 256 ---------VWRIKHHPEIFHRLLAACMHN-GAKILDSSDK 286 (339)
T ss_pred ---------eEEEEecchhhhHHHHHHHhc-CceEEEeccc
Confidence 378999985 3344444444 3556666654
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.4e-08 Score=91.89 Aligned_cols=312 Identities=16% Similarity=0.244 Sum_probs=185.5
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 115 (497)
Q Consensus 36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l 115 (497)
+-+.|||-|.||+|--.-| |.+|--.. +..++.| .| ..|.-+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~-----------------------f~r~~RF-~H-------------p~Vq~i 255 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGES-----------------------FDRIQRF-YH-------------PGVQFI 255 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCcc-----------------------HHHHHhc-cC-------------CCceee
Confidence 6789999999999987765 88996432 2222222 34 348889
Q ss_pred EEEecCCCCEEEEEeCC-----------ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 116 RWCAAPNGSMFILSTND-----------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 116 ~~~~s~~~~~l~s~s~d-----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
.| ||+.+||++-+.. ..+.|||+.+|..+......
T Consensus 256 df--SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~-------------------------------- 301 (698)
T KOG2314|consen 256 DF--SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI-------------------------------- 301 (698)
T ss_pred ec--CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc--------------------------------
Confidence 99 6888899986532 56788888887755432110
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCe-eEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNI-NSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
.. ...+ .-..||.|++++|--....|.||+..+ +..++.++. .-
T Consensus 302 --------------------------~~-~~~~WP~frWS~DdKy~Arm~~~sisIyEtps----f~lld~Ksl----ki 346 (698)
T KOG2314|consen 302 --------------------------KS-PYLKWPIFRWSHDDKYFARMTGNSISIYETPS----FMLLDKKSL----KI 346 (698)
T ss_pred --------------------------CC-CccccceEEeccCCceeEEeccceEEEEecCc----eeeeccccc----CC
Confidence 01 1122 236899999988876557899998762 333332221 22
Q ss_pred CCeEEEEEeCCCCcEEEEEeC-----CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEE
Q 010933 264 EVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 338 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 338 (497)
..|....|+|.+ ++||.=+. -.++.+-.+.+++.+ +.-.. +.-.-..+-|-.+|.+|
T Consensus 347 ~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~i----Rt~nl-------------fnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 347 SGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREI----RTKNL-------------FNVSDCKLHWQKSGDYL 408 (698)
T ss_pred ccccCcccCCCc-ceEEEEcccccCCcceEEEEecCcccee----eeccc-------------eeeeccEEEeccCCcEE
Confidence 567888999998 88876433 235666666665443 22111 11123456777889988
Q ss_pred EEEec-----------CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC---CCcE
Q 010933 339 LSRDY-----------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY---SNLL 404 (497)
Q Consensus 339 ~~~~~-----------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~---dg~i 404 (497)
+.-.| ..+.|+.++...-++......+.. ..++|-|.|..+++-+. ..++
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v----------------i~FaWEP~gdkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV----------------IAFAWEPHGDKFAVISGNTVKNTV 472 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe----------------eeeeeccCCCeEEEEEccccccce
Confidence 86321 245566665433444444443332 48999999987665443 4679
Q ss_pred EEEEcCC-CCcceEEEeccCcceeeeEeecCCCcccccccceeEee---ccCc-eecCCC--CCcc-cccccCCCeEEEE
Q 010933 405 RIFSHGV-GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL---YRQA-HENSSS--GHHE-LSYNLSSKLLHLA 476 (497)
Q Consensus 405 ~vw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~---~d~~-~iw~~~--~~~~-~~~~~~~~i~~l~ 476 (497)
.+|.+++ .........-.....+.+-++| .|++ ++.+. ..|. ..+.+. .... ....|. .-+.+.
T Consensus 473 sfY~~e~~~~~~~lVk~~dk~~~N~vfwsP--kG~f-----vvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~ve 544 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLVKELDKKFANTVFWSP--KGRF-----VVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVE 544 (698)
T ss_pred eEEEeecCCCchhhhhhhcccccceEEEcC--CCcE-----EEEEEecccccceEEEecchhhhhhccCcccc-ccccce
Confidence 9999884 2222112222235667888888 6776 33332 2222 333222 1111 112222 346789
Q ss_pred EecCCCEEEEEe-------CCceEEEe
Q 010933 477 WHPTTNLIACAN-------GNSLFFHY 496 (497)
Q Consensus 477 ~~p~~~~la~~~-------~~~~~i~~ 496 (497)
|.|.|+|+++++ +++..||.
T Consensus 545 WDPtGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred ECCCCCEEEEeeehhhhccccceEEEE
Confidence 999999999887 45566654
No 263
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=1.1e-07 Score=98.77 Aligned_cols=316 Identities=11% Similarity=0.099 Sum_probs=183.7
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEE----EecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILF----ETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
..+.|.++.|-++...|+.+..+|.|.+. +...... +.+..+ +
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~---------------------E~VG~v---d--------- 120 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI---------------------EIVGSV---D--------- 120 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee---------------------EEEEEE---c---------
Confidence 45789999999999999999999999999 4333221 222211 2
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecC----c---------hh-----------eeccccCCCC--------
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR----D---------QK-----------VKKIKEMDHF-------- 154 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~----~---------~~-----------~~~~~~~~~~-------- 154 (497)
.+|.+++| |||.+.|+.+..++++.+-.-. . +. ..++......
T Consensus 121 ---~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 121 ---SGILAASW--SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred ---CcEEEEEE--CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence 88999999 7899999999988888875321 0 00 0000000000
Q ss_pred Cc---cccccccccccCccccCCCCCccccccccc--cc--CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC
Q 010933 155 PF---VSSENTLLAEKNFMNEHNPPSFAHGYHLEW--TE--NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE 227 (497)
Q Consensus 155 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 227 (497)
+. +..-... .+..-+..+|-.++.+++.... .. ...+++|+.+....... ..-.+--.+++|.|.|+
T Consensus 196 p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stS-----E~v~gLe~~l~WrPsG~ 269 (928)
T PF04762_consen 196 PTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTS-----EPVDGLEGALSWRPSGN 269 (928)
T ss_pred CCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEecc-----ccCCCccCCccCCCCCC
Confidence 00 0000011 2334555666777888877765 22 46899999874311111 11122234689999999
Q ss_pred EEEEE-c---CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933 228 TFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 303 (497)
Q Consensus 228 ~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 303 (497)
+||+. . ...|.+|..+ +-+ ..-+.++ +......|..+.|++++ ..||..-.|. |.+|-..+..-..+..
T Consensus 270 lIA~~q~~~~~~~VvFfErN-GLr-hgeF~l~---~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFERN-GLR-HGEFTLR---FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQE 342 (928)
T ss_pred EEEEEEEcCCCcEEEEEecC-CcE-eeeEecC---CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence 99986 3 4567777765 333 2223222 33556789999999999 8999877665 9999987754332221
Q ss_pred ceecccccccCCccccccccccccEEEEeeCCC-EEEEEec-CeEEEEec----CCC-------Cceeeeeeecc-----
Q 010933 304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-MNLKLWDI----RMD-------STPVATFKIHE----- 365 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~-~~i~lwd~----~~~-------~~~~~~~~~~~----- 365 (497)
-.+.. ...+..+.|+|... .|..... |.+..++. ... ...+..+.|..
T Consensus 343 i~~~~--------------~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTp 408 (928)
T PF04762_consen 343 IRFSS--------------SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTP 408 (928)
T ss_pred EEccC--------------CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEec
Confidence 22222 12344588887543 3444332 55544432 110 01122222221
Q ss_pred ---cccc-cccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 366 ---HLRP-KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 366 ---~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
..++ .||. +.-..-..+.+++|++++..+++-..||.|.+|.....
T Consensus 409 f~~a~VPPPMs~-~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 409 FRRAVVPPPMSS-YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred ccccCCCchHhc-eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 1111 1221 11111122469999999988999999999999996543
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=2.4e-09 Score=90.71 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=108.8
Q ss_pred cCCCCCeeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeE
Q 010933 211 HAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 288 (497)
Q Consensus 211 ~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 288 (497)
+.|..+++.+.|+. +.+.+.+| +|+.+..||++..+..+-. ..+-|...|.++.-+|..+.++++|+.|..|
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i 235 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH------NSKVHTSGVVSIYSSPPKPTYIATGSYDECI 235 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee------cceeeecceEEEecCCCCCceEEEeccccce
Confidence 78999999999976 45577788 9999999999955543321 2456889999999888766899999999999
Q ss_pred EEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC--CEEEEEecCeEEEEecCCCC-c---eeeeee
Q 010933 289 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDS-T---PVATFK 362 (497)
Q Consensus 289 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~lwd~~~~~-~---~~~~~~ 362 (497)
++||.|+... ..++. ...+.|+.+..+|.- ++|+++-.+-.+|-+..... + .+...+
T Consensus 236 ~~~DtRnm~k-----Pl~~~------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 236 RVLDTRNMGK-----PLFKA------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred eeeehhcccC-----ccccC------------ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence 9999995432 12222 113679999999853 34555544556666665321 1 223334
Q ss_pred ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEE-EEEcCCC
Q 010933 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLR-IFSHGVG 412 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~-vw~~~~~ 412 (497)
.|.... ..-.|.....+|||++. |+.++ +|-.-++
T Consensus 299 ~hdSl~---------------YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 299 IHDSLC---------------YGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccccee---------------eccccccccceeeeeeccccceeeeeeeccC
Confidence 444321 34445333457888764 77755 7765544
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=5.3e-09 Score=97.03 Aligned_cols=192 Identities=14% Similarity=0.119 Sum_probs=138.0
Q ss_pred CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe------C--------------CCCcEEEEE
Q 010933 224 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH------P--------------IYCNLLAYS 282 (497)
Q Consensus 224 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~--------------~~~~~l~~~ 282 (497)
|...++|.. .||.+++|+... ++..+-+. .....++.-++..|. | +. .+++-|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~----p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t-~~lvlg 76 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFA----PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT-SMLVLG 76 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeec----cchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc-eEEEee
Confidence 445678888 999999999984 43333210 011122333333331 1 22 568888
Q ss_pred eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeee
Q 010933 283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATF 361 (497)
Q Consensus 283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~ 361 (497)
...|.|.+|++..++.. ..+.. ..|.+.++++.++.+-..|.+++ |+.+..|+... .+.++.+
T Consensus 77 t~~g~v~~ys~~~g~it----~~~st-----------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~ 140 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEIT----AKLST-----------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIW 140 (541)
T ss_pred cCCccEEEEEecCCeEE----EEEec-----------CCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeee
Confidence 88999999999988765 33332 45678999999998888888874 59999999986 7888888
Q ss_pred eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccccc
Q 010933 362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 441 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 441 (497)
+.....+ .+++.+|||+.|++++. .|++||+++++ +..++.+|.++|+++.|....++-. +
T Consensus 141 ~~~~~~~---------------~sl~is~D~~~l~~as~--~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~-G 201 (541)
T KOG4547|consen 141 KEQKPLV---------------SSLCISPDGKILLTASR--QIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGII-G 201 (541)
T ss_pred ccCCCcc---------------ceEEEcCCCCEEEeccc--eEEEEEccCce-EEEEecCCCcceEEEEEEEeccccc-c
Confidence 7776654 58999999999999884 89999999984 4599999999999999987533221 1
Q ss_pred ccceeEeeccCc-eec
Q 010933 442 LSNLTRGLYRQA-HEN 456 (497)
Q Consensus 442 ~~~l~~~~~d~~-~iw 456 (497)
..+|.+...+.. .+|
T Consensus 202 ~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 202 KYVLSSAAAERGITVW 217 (541)
T ss_pred ceeeeccccccceeEE
Confidence 234555555555 888
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=4.8e-10 Score=96.83 Aligned_cols=237 Identities=11% Similarity=0.109 Sum_probs=149.4
Q ss_pred CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCce-eeEEeecCCCccCCC------------CCCeEEEEEeCCC-CcE
Q 010933 214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ-CFNIVDMKPSNMDDL------------TEVITSAEFHPIY-CNL 278 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~-~~~ 278 (497)
..-|.++.|...|++|++| .+|.|.+|..+...+ ..... .+++.| ...|..+.|.+++ ...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~----t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQ----TEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeee----eeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence 4568899999999999999 999999998663332 11110 012222 3678899998775 246
Q ss_pred EEEEeCCCeEEEEEccCCccccccc----------------ceecccc---cccCCccccccccccccEEEEeeCCCEEE
Q 010933 279 LAYSSSRGFVRLVDMRQSALCDHSA----------------RILRDAA---ESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 279 l~~~~~dg~i~v~d~~~~~~~~~~~----------------~~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
++..+.|.+|++|-++......... .....|. +....+..-.+|.--|++++++.|++.++
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 7788899999999987654321000 0000000 00011122357888999999999999999
Q ss_pred EEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcce--
Q 010933 340 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGG-- 416 (497)
Q Consensus 340 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~-- 416 (497)
+++|=.|.+|++.-..+.............. -..-|++..|+|. ...++..+..|+|++-|++......
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEe--------LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEE--------LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHH--------HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 9999999999997544433333222211110 0011368999995 4577778889999999998542110
Q ss_pred -EEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEE
Q 010933 417 -ITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFH 495 (497)
Q Consensus 417 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~ 495 (497)
..++....|+.. .-..+.-..|.++.|+++|++|++=+...+.+|
T Consensus 253 sKlfEepedp~~r----------------------------------sffseiIsSISDvKFs~sGryilsRDyltvk~w 298 (433)
T KOG1354|consen 253 SKLFEEPEDPSSR----------------------------------SFFSEIISSISDVKFSHSGRYILSRDYLTVKLW 298 (433)
T ss_pred hhhhccccCCcch----------------------------------hhHHHHhhhhhceEEccCCcEEEEeccceeEEE
Confidence 001111111100 001122347889999999999999999999999
Q ss_pred e
Q 010933 496 Y 496 (497)
Q Consensus 496 ~ 496 (497)
.
T Consensus 299 D 299 (433)
T KOG1354|consen 299 D 299 (433)
T ss_pred e
Confidence 6
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.18 E-value=3.4e-07 Score=95.23 Aligned_cols=283 Identities=11% Similarity=0.063 Sum_probs=171.8
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEe----ecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLW----KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
+.|.++.|. ++...++.+..+|.|.+. +.......
T Consensus 76 ~~ivs~~yl--~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E--------------------------------------- 114 (928)
T PF04762_consen 76 DKIVSFQYL--ADSESLCIALASGDIILVREDPDPDEDEIE--------------------------------------- 114 (928)
T ss_pred CcEEEEEec--cCCCcEEEEECCceEEEEEccCCCCCceeE---------------------------------------
Confidence 679999995 677788889899999988 33333211
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC--------------ceeeE
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------------DQCFN 250 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~--------------~~~~~ 250 (497)
++. .-...|.+++||||++.++.. .++++.+....-. .+.+.
T Consensus 115 -------------------~VG----~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~Vs 171 (928)
T PF04762_consen 115 -------------------IVG----SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVS 171 (928)
T ss_pred -------------------EEE----EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceee
Confidence 222 225689999999999999988 8888877643210 00000
Q ss_pred EeecCC--------------------------CccCCCCCCeEEEEEeCCCCcEEEEEeC---C---CeEEEEEccCCcc
Q 010933 251 IVDMKP--------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSS---R---GFVRLVDMRQSAL 298 (497)
Q Consensus 251 ~~~~~~--------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d---g~i~v~d~~~~~~ 298 (497)
+=..+. ..+. ..+.-..++|-.|| .++|+.+. . +.+|||+-+ |.+
T Consensus 172 VGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~L 248 (928)
T PF04762_consen 172 VGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GEL 248 (928)
T ss_pred eccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ceE
Confidence 000000 0111 33455788999999 99998875 2 579999955 543
Q ss_pred cccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe---c-CeEEEEecCCCCceeeeeeeccccccccccc
Q 010933 299 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 374 (497)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
.. +-+. -.+--.+++|-|.|++||+.. + ..|.+|.-+ |-....|......
T Consensus 249 ~s----tSE~-------------v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l~~~~------- 302 (928)
T PF04762_consen 249 QS----TSEP-------------VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTLRFDP------- 302 (928)
T ss_pred Ee----cccc-------------CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEecCCCC-------
Confidence 21 1111 012345789999999999963 2 677777753 5444444433211
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc-ceEEEeccC-cceeeeEeecCCCcccccccceeEeeccC
Q 010933 375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA-GGITVEAGK-NENRKPILQAAPRARRSSLSNLTRGLYRQ 452 (497)
Q Consensus 375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~~~~~d~ 452 (497)
....+..+.|++|+..||..-.|. |.+|-..+..- +++.+.... ..+..+.|.|.+..+ |......+
T Consensus 303 ----~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~------L~v~t~~g 371 (928)
T PF04762_consen 303 ----EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLR------LHVLTSNG 371 (928)
T ss_pred ----CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCE------EEEEecCC
Confidence 000126899999999999977665 99999887642 334444332 234447777763332 33333322
Q ss_pred c---e--ec----CCCC-----------------------------CcccccccCCCeEEEEEecCCCEEEEEeCCc-eE
Q 010933 453 A---H--EN----SSSG-----------------------------HHELSYNLSSKLLHLAWHPTTNLIACANGNS-LF 493 (497)
Q Consensus 453 ~---~--iw----~~~~-----------------------------~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~-~~ 493 (497)
. . .| ..+. +.........+|.+++|++++..+|+-..++ +.
T Consensus 372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~ 451 (928)
T PF04762_consen 372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLS 451 (928)
T ss_pred cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence 2 1 12 1000 0011234567999999999998777776555 88
Q ss_pred EEe
Q 010933 494 FHY 496 (497)
Q Consensus 494 i~~ 496 (497)
+|.
T Consensus 452 ~~~ 454 (928)
T PF04762_consen 452 IYE 454 (928)
T ss_pred EEE
Confidence 875
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=6.2e-09 Score=87.05 Aligned_cols=168 Identities=12% Similarity=0.007 Sum_probs=108.5
Q ss_pred eeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 217 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 217 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
+.+++++++++++++- +...|..|.+......+..+ .....++.-.+..|+... ..+|+++.||.+.|||+|.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----EecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecc
Confidence 7789999999999986 89999999988544433221 133344555788899888 8999999999999999998
Q ss_pred CcccccccceecccccccCCccccccccccccEEEEeeCCC--EEEEEec-CeEEEEecCCCCceeeeeeeccccccccc
Q 010933 296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC 372 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 372 (497)
..... .... .+-+.|.+.+..+.|++-|. +|+.... +.+.+-|+++ .+-.+.+...+..-
T Consensus 235 ~~tpm----~~~s--------strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~---- 297 (344)
T KOG4532|consen 235 MATPM----AEIS--------STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVE---- 297 (344)
T ss_pred cccch----hhhc--------ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCcccc----
Confidence 65331 1111 11234779999999998663 4555544 9999999997 66555554333210
Q ss_pred ccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 373 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 373 ~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
. .....++....|+.++.-+.+.+++ .+.-|++.+
T Consensus 298 --~-~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 298 --R-KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred --c-cccccccccccccCCCcccccccch-hhheeeccc
Confidence 0 0000112356676666655554443 344455543
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.16 E-value=3.2e-09 Score=91.89 Aligned_cols=250 Identities=9% Similarity=0.062 Sum_probs=177.5
Q ss_pred cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCc-hheeccccCCCCCccccccccc
Q 010933 86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLL 164 (497)
Q Consensus 86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (497)
++.++..++||. +.|++.... |...-+++++.|.++++|--.+ ++.-.
T Consensus 13 kp~ll~~~eG~~------------d~vn~~~l~--~~e~gv~~~s~drtvrv~lkrds~q~wp----------------- 61 (404)
T KOG1409|consen 13 KPELLSKIEGSQ------------DDVNAAILI--PKEEGVISVSEDRTVRVWLKRDSGQYWP----------------- 61 (404)
T ss_pred chhhhhhhcCch------------hhhhhheec--cCCCCeEEccccceeeeEEeccccccCc-----------------
Confidence 345677788888 778887764 4556799999999999995433 33110
Q ss_pred cccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933 165 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 243 (497)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~ 243 (497)
.+. ..-..+++++.+.++...|+.| .+|++.-+.+.
T Consensus 62 ----------------------------------------sI~---~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 62 ----------------------------------------SIY---HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred ----------------------------------------hhh---hhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 000 2335678899999999999999 99999998766
Q ss_pred cCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 244 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
..-..... +.....|...+..+.|+-.. ..+++.+.|..+.-.-.+.+..+.. ..++
T Consensus 99 edfnkm~~----~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~--Y~~~---------------- 155 (404)
T KOG1409|consen 99 EDFNKMTF----LKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGG--YNFE---------------- 155 (404)
T ss_pred hhhhhcch----hhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccc--eEee----------------
Confidence 22221111 12356799999999999887 8999999998887666666543321 1111
Q ss_pred ccccEEEEeeCCCEEEEEec-CeEEEEecCC-CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933 324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 401 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 401 (497)
..-+++.+.-. +...|+. |.|.+-.+.. .-.++.++.+|...+ ++++|.+..+.|++|..|
T Consensus 156 ~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~---------------~~l~Wd~~~~~LfSg~~d 218 (404)
T KOG1409|consen 156 TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEV---------------TCLKWDPGQRLLFSGASD 218 (404)
T ss_pred ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccce---------------EEEEEcCCCcEEEecccc
Confidence 12223333322 4455543 6665554432 246788888888865 799999999999999999
Q ss_pred CcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eec
Q 010933 402 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 402 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw 456 (497)
..+.+||+.-.......+.+|.+.|..+...+ -.+. +.+.+.||. .+|
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~--~t~~-----l~S~~edg~i~~w 267 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ--HTRQ-----LISCGEDGGIVVW 267 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhh--hhee-----eeeccCCCeEEEE
Confidence 99999999988888899999999998887765 3333 889999999 999
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=9.6e-10 Score=103.82 Aligned_cols=240 Identities=8% Similarity=0.080 Sum_probs=160.6
Q ss_pred CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEe------ecC-CCccCCCCCCeEEEEEeCCCCcEEEEEeCC
Q 010933 214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV------DMK-PSNMDDLTEVITSAEFHPIYCNLLAYSSSR 285 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~------~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 285 (497)
.....+++|+....++++| .||.+++..+.+.....+.- .+. ..++++|...|.-+.|+.+. ..|-+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCC
Confidence 3457899999999999998 99999999876422111110 000 14689999999999999998 889999999
Q ss_pred CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCcee--eeee
Q 010933 286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPV--ATFK 362 (497)
Q Consensus 286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~--~~~~ 362 (497)
|.|.+|=+-.+.-+......-. ++.|.+|+|+.||..+... .||.|.+=.+. +..+ +.++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRn---------------KSvV~SmsWn~dG~kIcIvYeDGavIVGsvd--GNRIwgKeLk 155 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRN---------------KSVVVSMSWNLDGTKICIVYEDGAVIVGSVD--GNRIWGKELK 155 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcC---------------ccEEEEEEEcCCCcEEEEEEccCCEEEEeec--cceecchhcc
Confidence 9999999988765532211111 3678999999999988776 66888877775 3322 2233
Q ss_pred ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcce------EE----EeccCcceeeeEee
Q 010933 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG------IT----VEAGKNENRKPILQ 432 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~------~~----~~~~~~~v~~~~~~ 432 (497)
+... ..+.|++|.+.+..+-..|.+++||.+..-... .. +..-...+-.+.+.
T Consensus 156 g~~l-----------------~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 156 GQLL-----------------AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred hhec-----------------cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 3322 369999999999989999999999976531110 00 11111123333333
Q ss_pred cCCCccc-ccccceeEeeccCc-eec-CCCCCcccccccCCCeEEEEEecCCCEEEEEe
Q 010933 433 AAPRARR-SSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSSKLLHLAWHPTTNLIACAN 488 (497)
Q Consensus 433 ~~~~~~~-~~~~~l~~~~~d~~-~iw-~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~ 488 (497)
...-... ...+.|+.+-..|. .+- +.........+..-.|....|+++|.+||+++
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEcc
Confidence 2211111 12356888888888 444 44433334444456888999999999999988
No 271
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3e-09 Score=95.22 Aligned_cols=326 Identities=15% Similarity=0.124 Sum_probs=205.7
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
-|.+.|+.+.-+. .+++.+++.||.++.|.-.... -.+++..+..|-
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL------------ 53 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL------------ 53 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH------------
Confidence 4778888877654 5799999999999999864411 235678888898
Q ss_pred cceeEEEEEecCCCCEEEEEeC-CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 110 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
..|.+++- +-++.++.+.+. |..++++|+++-......+....+ +.........+...+.+.+...
T Consensus 54 ~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-----------g~a~wv~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 54 GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-----------GFAEWVTSKGDKISLIAVSLFK 120 (558)
T ss_pred HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCC-----------CceEEecCCCCeeeeEEeeccc
Confidence 77888888 678888888776 999999999987766554443332 1111111122222334444456
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceee-E--EeecCCC----ccC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-N--IVDMKPS----NMD 260 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~-~--~~~~~~~----~~~ 260 (497)
.+.+.++|........+. +-.-|..+|..+.+++-+..+++. ..|.|.-|..+..-+.. . .+.+|.. .+.
T Consensus 121 sg~i~VvD~~~d~~q~~~--fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGY--FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP 198 (558)
T ss_pred CCCcEEECCcCCcCccce--ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence 778888887654322222 225789999999999999999999 89999999887211100 0 1111211 122
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcc---------------ccccc-cc
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKS---------------FFTEI-IA 324 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~ 324 (497)
.......++.|+|++ ..+.+-+.|..|++++++++++...........+..+.... .+..| ..
T Consensus 199 K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~ 277 (558)
T KOG0882|consen 199 KAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST 277 (558)
T ss_pred ccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence 345667899999999 99999999999999999999876322111111111111110 01122 23
Q ss_pred cccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCC------------CCCccceeEEEEcCCC
Q 010933 325 SISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN------------NDSIFDKFECSVSGDG 392 (497)
Q Consensus 325 ~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~s~~~ 392 (497)
.-..+.|...|++|+.|+-=-|++.++.+ +.+++.+-..+........+|. ..+.. -.+.+.+|-
T Consensus 278 ~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~n--p~~~~~~dp 354 (558)
T KOG0882|consen 278 VGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNN--PLLEFQKDP 354 (558)
T ss_pred ccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccC--cccccCCCC
Confidence 34667899999999999886789999886 6655554322221111001110 00111 124466677
Q ss_pred CEEEEEeCCCcEEEE
Q 010933 393 LHFATGSYSNLLRIF 407 (497)
Q Consensus 393 ~~l~s~~~dg~i~vw 407 (497)
..++++-..+++++|
T Consensus 355 t~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 355 TIVCTAFKKNRFYLF 369 (558)
T ss_pred eEEEeeeecceEEEE
Confidence 777777778888888
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=2.7e-08 Score=89.92 Aligned_cols=147 Identities=14% Similarity=0.246 Sum_probs=111.8
Q ss_pred cccCCcceEEEEEcCCCCEEEEeecCC-eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccc
Q 010933 28 ELQDVDIVSAIEFDKTGDYLAVGDRGG-RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 106 (497)
Q Consensus 28 ~~~h~~~I~~i~~sp~g~~lasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 106 (497)
+++|...|.-..+..+++-++.|..|| .+-|+|..+++. +.+...-
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~------------------------kr~e~~l--------- 401 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV------------------------KRIEKDL--------- 401 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE------------------------EEeeCCc---------
Confidence 346778899999998888999999999 899999988752 2233333
Q ss_pred ccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 107 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 107 ~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
+.|.++.. +++|++++.+.....+.+.|++++....+.
T Consensus 402 ---g~I~av~v--s~dGK~~vvaNdr~el~vididngnv~~id------------------------------------- 439 (668)
T COG4946 402 ---GNIEAVKV--SPDGKKVVVANDRFELWVIDIDNGNVRLID------------------------------------- 439 (668)
T ss_pred ---cceEEEEE--cCCCcEEEEEcCceEEEEEEecCCCeeEec-------------------------------------
Confidence 77999999 789999999998899999999988754421
Q ss_pred ccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cC----CeEEEEeCccCceeeEEeecCCCccCC
Q 010933 187 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
+...+-|+...|+|+++++|.+ -+ ..|+++|+. +++...+ ..
T Consensus 440 ------------------------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~-~~Kiy~v--------TT 486 (668)
T COG4946 440 ------------------------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD-GGKIYDV--------TT 486 (668)
T ss_pred ------------------------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC-CCeEEEe--------cC
Confidence 3445678999999999999987 54 478999999 6665553 22
Q ss_pred CCCCeEEEEEeCCCCcEEEEEe
Q 010933 262 LTEVITSAEFHPIYCNLLAYSS 283 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~ 283 (497)
..+.-.+-+|+|++ ++|..-+
T Consensus 487 ~ta~DfsPaFD~d~-ryLYfLs 507 (668)
T COG4946 487 PTAYDFSPAFDPDG-RYLYFLS 507 (668)
T ss_pred CcccccCcccCCCC-cEEEEEe
Confidence 33334566899999 7766554
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.09 E-value=4e-07 Score=82.58 Aligned_cols=173 Identities=21% Similarity=0.303 Sum_probs=124.8
Q ss_pred EcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEE
Q 010933 40 FDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 118 (497)
Q Consensus 40 ~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~ 118 (497)
|++ +|+++|..|. |...|.+...+- ..--+|. ++|.-.++
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~-------------------------~iqv~~~------------~~VrY~r~- 367 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGY-------------------------SIQVGKK------------GGVRYRRI- 367 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCe-------------------------eEEcCCC------------CceEEEEE-
Confidence 454 6889988885 667776654431 1112454 67877777
Q ss_pred ecCCCCEEEEEeCCc-cEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEee
Q 010933 119 AAPNGSMFILSTNDK-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV 197 (497)
Q Consensus 119 ~s~~~~~l~s~s~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (497)
..+++-++.|..|| .+-|+|..+++.+.+
T Consensus 368 -~~~~e~~vigt~dgD~l~iyd~~~~e~kr~------------------------------------------------- 397 (668)
T COG4946 368 -QVDPEGDVIGTNDGDKLGIYDKDGGEVKRI------------------------------------------------- 397 (668)
T ss_pred -ccCCcceEEeccCCceEEEEecCCceEEEe-------------------------------------------------
Confidence 45666888898888 999999998886553
Q ss_pred cCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCC
Q 010933 198 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 276 (497)
Q Consensus 198 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 276 (497)
...-+.|.++..+++|+.++.+ +...+.+.|++ ++....+ -+...+-|+.+.|+|++
T Consensus 398 -------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid-ngnv~~i-------dkS~~~lItdf~~~~ns- 455 (668)
T COG4946 398 -------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID-NGNVRLI-------DKSEYGLITDFDWHPNS- 455 (668)
T ss_pred -------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec-CCCeeEe-------cccccceeEEEEEcCCc-
Confidence 3445689999999999999999 88899999999 4433322 23456789999999999
Q ss_pred cEEEEEeCCC----eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 277 NLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 277 ~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
.++|.+--+| .|+++|+..++.. .+-.. ...=.+-+|.|++++|..-
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~Kiy----~vTT~--------------ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGGKIY----DVTTP--------------TAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCCeEE----EecCC--------------cccccCcccCCCCcEEEEE
Confidence 9999886654 7999999988544 11111 1234567899999988653
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=2.4e-07 Score=98.28 Aligned_cols=188 Identities=13% Similarity=0.130 Sum_probs=106.3
Q ss_pred eeEEEeCC-CCCEEEEE-cCCeEEEEeCccCceeeEEeecC--CCccCC------CCCCeEEEEEeCCCCc-EEEEEeCC
Q 010933 217 INSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDD------LTEVITSAEFHPIYCN-LLAYSSSR 285 (497)
Q Consensus 217 v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~------~~~~i~~~~~~~~~~~-~l~~~~~d 285 (497)
.+.++++| ++..+++. .++.|++||.. .+..... ... .....+ .-.....++++|++ . ++++-+.+
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~-~g~v~~~-~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-~~LYVADs~n 761 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNIS-DGVTRVF-SGDGYERNLNGSSGTSTSFAQPSGISLSPDL-KELYIADSES 761 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECC-CCeEEEE-ecCCccccCCCCccccccccCccEEEEeCCC-CEEEEEECCC
Confidence 35789999 55555666 88999999987 3332211 000 000011 11345789999998 6 55555667
Q ss_pred CeEEEEEccCCcccccccceecccccccCCcccc--------ccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCc
Q 010933 286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFF--------TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDST 356 (497)
Q Consensus 286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~ 356 (497)
+.|++||+.++... ....+..........+ ...-.....++++++|+++++-.. +.|++||..+ +.
T Consensus 762 ~~Irv~D~~tg~~~----~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~ 836 (1057)
T PLN02919 762 SSIRALDLKTGGSR----LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR 836 (1057)
T ss_pred CeEEEEECCCCcEE----EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce
Confidence 99999999876421 0000000000000000 001123468999999987766544 9999999874 43
Q ss_pred eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
. ..+.+....-.. -.............++++++|+.+++-+.++.|++||+.++..
T Consensus 837 v-~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 V-TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred E-EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 3 333321100000 0000000011125899999999999989999999999988754
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.08 E-value=1.1e-06 Score=80.36 Aligned_cols=253 Identities=10% Similarity=0.046 Sum_probs=139.4
Q ss_pred cCCCCEEEEEeC----------CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 120 APNGSMFILSTN----------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 120 s~~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
+||++.++.+.. +..|.+||..+.+.......+..++. ...........++++++++...+.++
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~------~~~~~~~~~~ls~dgk~l~V~n~~p~ 127 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF------LVGTYPWMTSLTPDNKTLLFYQFSPS 127 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh------hccCccceEEECCCCCEEEEecCCCC
Confidence 789988888754 78999999999886654433322110 00111223444667777777777677
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCC-----CCC
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-----LTE 264 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~ 264 (497)
..+.+.|+.... .+...-. ..... +--..+...++-+.||......+...++.... ..+ .+.. ...
T Consensus 128 ~~V~VvD~~~~k---vv~ei~v--p~~~~-vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~-~~~--vf~~~~~~v~~r 198 (352)
T TIGR02658 128 PAVGVVDLEGKA---FVRMMDV--PDCYH-IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK-PTE--VFHPEDEYLINH 198 (352)
T ss_pred CEEEEEECCCCc---EEEEEeC--CCCcE-EEEecCCccEEEeecCceEEEEecCCCceEEe-eee--eecCCccccccC
Confidence 888888887542 2222201 11111 11122222333334444444333322321110 000 0001 012
Q ss_pred CeEEEEEeC-CCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-
Q 010933 265 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 342 (497)
Q Consensus 265 ~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~- 342 (497)
+ .|.+ +| .++.+... |.|.+.|+........ ..+..-... .....+ ..+.+.-++++|+++.++.+.
T Consensus 199 P----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~--~~~~~~~~~-~~~~~w--rP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 199 P----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFL--PAIEAFTEA-EKADGW--RPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred C----ceEcCCC-cEEEEecC-CeEEEEecCCCcceec--ceeeecccc-cccccc--CCCcceeEEEcCCCCEEEEEec
Confidence 2 4455 66 66655555 9999999755432111 111110000 000000 113445599999998887742
Q ss_pred --------c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEe-CCCcEEEEEcC
Q 010933 343 --------Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHG 410 (497)
Q Consensus 343 --------~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~-~dg~i~vw~~~ 410 (497)
+ +.|.++|..+ ++.+..+...... ..++++||++ +|++.. .++.|.++|..
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~~----------------~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHEI----------------DSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CCccccccCCCCEEEEEECCC-CeEEEEEeCCCce----------------eeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 1 5899999987 8888887754432 5899999999 887666 57889999999
Q ss_pred CCCcc
Q 010933 411 VGSAG 415 (497)
Q Consensus 411 ~~~~~ 415 (497)
+++.+
T Consensus 331 t~k~i 335 (352)
T TIGR02658 331 TGKEL 335 (352)
T ss_pred CCeEE
Confidence 88554
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=1.1e-09 Score=103.84 Aligned_cols=295 Identities=13% Similarity=0.125 Sum_probs=183.6
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
-.+.+.++.++|.|+-+|.++.-| +.+-|+...-. .++.+..+.. -
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-------------------ppr~l~h~tp--------------w 68 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-------------------PPRWLHHITP--------------W 68 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-------------------CceeeeccCc--------------c
Confidence 357889999999999999998776 67778765321 2233333322 2
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|-.+.|+|.+...+-+.........+|++....-
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~--------------------------------------------- 103 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS--------------------------------------------- 103 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCc---------------------------------------------
Confidence 37788998766666666666666677888754321
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
+.+..++.+|...|+.+.|+|+.. .++++ .|..+..||+++....+.. ...-......
T Consensus 104 -------------~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys-------~~~w~s~asq 163 (1081)
T KOG0309|consen 104 -------------NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS-------TSSWRSAASQ 163 (1081)
T ss_pred -------------cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee-------eecccccCce
Confidence 112222479999999999998654 56778 9999999999976666654 2223344577
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee--CCCEEEEEecCeE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDYMNL 346 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~~~i 346 (497)
++|+-.. ..+++.+..+.|++||++.|.... ..+ .+|...++.+.|.. .++.+-++.|++|
T Consensus 164 Vkwnyk~-p~vlasshg~~i~vwd~r~gs~pl---~s~-------------K~~vs~vn~~~fnr~~~s~~~s~~~d~tv 226 (1081)
T KOG0309|consen 164 VKWNYKD-PNVLASSHGNDIFVWDLRKGSTPL---CSL-------------KGHVSSVNSIDFNRFKYSEIMSSSNDGTV 226 (1081)
T ss_pred eeecccC-cchhhhccCCceEEEeccCCCcce---EEe-------------cccceeeehHHHhhhhhhhhcccCCCCce
Confidence 8898766 344556677889999999875432 111 23456778888764 2344445577999
Q ss_pred EEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC--EEE---------EEeCCCcEEEEEcCCCCcc
Q 010933 347 KLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL--HFA---------TGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 347 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~---------s~~~dg~i~vw~~~~~~~~ 415 (497)
++||....-+.-........++ +.-.+-|=|+ ++. ----++....|++.++...
T Consensus 227 kfw~y~kSt~e~~~~vtt~~pi---------------w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 227 KFWDYSKSTTESKRTVTTNFPI---------------WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred eeecccccccccceeccccCcc---------------eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcc
Confidence 9999875222211111111111 3344444222 221 1112334445666666666
Q ss_pred eEEEeccCcceeeeEeecCCC--c-ccccccceeEeeccCc-eec
Q 010933 416 GITVEAGKNENRKPILQAAPR--A-RRSSLSNLTRGLYRQA-HEN 456 (497)
Q Consensus 416 ~~~~~~~~~~v~~~~~~~~~~--~-~~~~~~~l~~~~~d~~-~iw 456 (497)
.+.+.||.+.|....+..... + +-+-.--|++-+.|.. ++|
T Consensus 292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 789999999888777654211 0 0000123789999988 999
No 277
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.04 E-value=4.7e-09 Score=92.87 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=68.5
Q ss_pred cCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933 211 HAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 289 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 289 (497)
-+|-+.++.++|+||+++|+++ .|..|++-... .--.+..+ +.||+.-|..++.-++ ..|++++.|++|+
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~Iesf------clGH~eFVS~isl~~~--~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESF------CLGHKEFVSTISLTDN--YLLLSGSGDKTLR 218 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhh------ccccHhheeeeeeccC--ceeeecCCCCcEE
Confidence 4999999999999999999999 99999998776 22233322 5689999999999987 4699999999999
Q ss_pred EEEccCCccc
Q 010933 290 LVDMRQSALC 299 (497)
Q Consensus 290 v~d~~~~~~~ 299 (497)
+||+++|+.+
T Consensus 219 ~Wd~~sgk~L 228 (390)
T KOG3914|consen 219 LWDITSGKLL 228 (390)
T ss_pred EEecccCCcc
Confidence 9999999876
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=1.2e-07 Score=90.49 Aligned_cols=198 Identities=14% Similarity=0.111 Sum_probs=116.9
Q ss_pred cceEEEEEcCCCCE-EEEeec---CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 33 DIVSAIEFDKTGDY-LAVGDR---GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 33 ~~I~~i~~sp~g~~-lasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+.+....|||||+. ++..+. +..|.++|+.+++. +.+....
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---------------------~~lt~~~-------------- 232 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---------------------EKIASSQ-------------- 232 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---------------------EEEecCC--------------
Confidence 47788999999985 664443 35688889887753 2222222
Q ss_pred ccceeEEEEEecCCCCEEEEE-eCC--ccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILS-TND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 185 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~-s~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (497)
+......| +|||+.++.. +.+ ..|.++++.++....+
T Consensus 233 -g~~~~~~~--SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L------------------------------------- 272 (419)
T PRK04043 233 -GMLVVSDV--SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI------------------------------------- 272 (419)
T ss_pred -CcEEeeEE--CCCCCEEEEEEccCCCcEEEEEECCCCcEEEc-------------------------------------
Confidence 33556778 7899877654 333 4566667666553322
Q ss_pred cccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCC--eEEEEeCccCceeeEEeecCCCccCC
Q 010933 186 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDL--RINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
..+........|+|||+.|+.. ..+ .|++.|+. ++...++. ..+
T Consensus 273 -------------------------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-~g~~~rlt------~~g 320 (419)
T PRK04043 273 -------------------------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-SGSVEQVV------FHG 320 (419)
T ss_pred -------------------------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-CCCeEeCc------cCC
Confidence 1112222345799999988764 333 67777777 44433321 222
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCC---------CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe
Q 010933 262 LTEVITSAEFHPIYCNLLAYSSSR---------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 332 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 332 (497)
. ....|+|+| +.|+..+.. ..|.+.|+.++.. +.+.. ........|+
T Consensus 321 ~----~~~~~SPDG-~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-----~~LT~--------------~~~~~~p~~S 376 (419)
T PRK04043 321 K----NNSSVSTYK-NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-----RRLTA--------------NGVNQFPRFS 376 (419)
T ss_pred C----cCceECCCC-CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-----EECCC--------------CCCcCCeEEC
Confidence 1 124899999 777666543 3688888877653 22222 0123358899
Q ss_pred eCCCEEEEEec----CeEEEEecCCCCceeeeeee
Q 010933 333 NDGQHLLSRDY----MNLKLWDIRMDSTPVATFKI 363 (497)
Q Consensus 333 ~~g~~l~~~~~----~~i~lwd~~~~~~~~~~~~~ 363 (497)
|||+.|+.... ..+.+.++. +.....+..
T Consensus 377 PDG~~I~f~~~~~~~~~L~~~~l~--g~~~~~l~~ 409 (419)
T PRK04043 377 SDGGSIMFIKYLGNQSALGIIRLN--YNKSFLFPL 409 (419)
T ss_pred CCCCEEEEEEccCCcEEEEEEecC--CCeeEEeec
Confidence 99998877532 345566664 554444443
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=7.1e-10 Score=101.67 Aligned_cols=220 Identities=24% Similarity=0.318 Sum_probs=143.9
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchh-eeccccCCCCCccccccccccccC
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKN 168 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (497)
+..+.||+ +.|..++-. .+...+++++.|++|++|.+.... .+.
T Consensus 728 L~nf~GH~------------~~iRai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~--------------------- 772 (1034)
T KOG4190|consen 728 LCNFTGHQ------------EKIRAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIG--------------------- 772 (1034)
T ss_pred eecccCcH------------HHhHHHHhc--ccccceeeccCCceEEEEEeccccCccc---------------------
Confidence 34567777 778888663 455679999999999999986422 110
Q ss_pred ccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCcee
Q 010933 169 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQC 248 (497)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~ 248 (497)
+..|..+| ..|..+|.++.|-.+.+.++++ |+.|.+||.-.+...
T Consensus 773 ---------------------------------tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~L 817 (1034)
T KOG4190|consen 773 ---------------------------------TSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLL 817 (1034)
T ss_pred ---------------------------------cceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchh
Confidence 22466677 8999999999999888887766 778999997744333
Q ss_pred eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933 249 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 328 (497)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (497)
.+..+.+ -.+....|.++.-- +..-+++.++...+++++|.|..+.. ..++. .+. .+....+.+
T Consensus 818 aq~~dap---k~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~----~E~kV-cna-------~~Pna~~R~ 881 (1034)
T KOG4190|consen 818 AQMEDAP---KEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWT----CELKV-CNA-------PGPNALTRA 881 (1034)
T ss_pred HhhhcCc---ccCCCceeEecccC-cchheeeeccchhhheeeecccccce----eeEEe-ccC-------CCCchheeE
Confidence 3232111 11222333333211 22133444577899999999987644 22222 111 112356889
Q ss_pred EEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEE-
Q 010933 329 IKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI- 406 (497)
Q Consensus 329 ~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~v- 406 (497)
++.-+.|++++++ +.|.|.+.|.++ ++.+..++.-+ |++ ..++ .|..+.|+....|..+.|
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpme------cdl---------lqla-apsdq~L~~saldHslaVn 944 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPME------CDL---------LQLA-APSDQALAQSALDHSLAVN 944 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCC-CceeccCCccc------chh---------hhhc-CchhHHHHhhcccceeEee
Confidence 9999999999998 669999999997 87776554322 211 1222 355677888888888888
Q ss_pred EEcCCC
Q 010933 407 FSHGVG 412 (497)
Q Consensus 407 w~~~~~ 412 (497)
|....+
T Consensus 945 Whaldg 950 (1034)
T KOG4190|consen 945 WHALDG 950 (1034)
T ss_pred ehhcCC
Confidence 887665
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.00 E-value=1.9e-08 Score=83.86 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=91.7
Q ss_pred CCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe-----CCCeEEEEEccCC
Q 010933 223 NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-----SRGFVRLVDMRQS 296 (497)
Q Consensus 223 ~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----~dg~i~v~d~~~~ 296 (497)
+--++.++++ .||.+.+++.+...+....+ -..|.+. .+.+....+ +++.++. .-+..+.|+++..
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i------~~~~~~~-as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~ 169 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRI------PSIHSGS-ASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPI 169 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhc------ccccccc-cccceeecc-cEEecCCcceEeeccceeeeccccc
Confidence 3345567888 99999999987321111110 0111111 122222333 3343332 1234566666653
Q ss_pred cccccccceecccccccCCccccccccccccEEEEeeCCCE-EEEEec-CeEEEEecCCCCceeeeeeeccccccccccc
Q 010933 297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 374 (497)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 374 (497)
+......+. ...+.+++-+|..+. +++|++ |.+-+||.++...+...++.|+..+
T Consensus 170 ~t~~~~~~~-----------------~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i------ 226 (319)
T KOG4714|consen 170 KTLIPSKKA-----------------LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI------ 226 (319)
T ss_pred ccccccccc-----------------cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh------
Confidence 322100000 134888999997654 555655 9999999998666677788888765
Q ss_pred CCCCCccceeEEEEcC-CCCEEEEEeCCCcEEEEEcCC
Q 010933 375 YNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 375 ~~~~~~~~~~~~~~s~-~~~~l~s~~~dg~i~vw~~~~ 411 (497)
+.+.|+| ++..|+++++||.+-.||..+
T Consensus 227 ---------~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 227 ---------WEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---------hheeccCCCchheeEecCCCcEEEEcCCC
Confidence 6899999 678999999999999999775
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=1.2e-06 Score=80.24 Aligned_cols=252 Identities=11% Similarity=0.135 Sum_probs=138.0
Q ss_pred EcCCCCEEEEeec----------CCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccC-ccccccccccc
Q 010933 40 FDKTGDYLAVGDR----------GGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHE-PEFDYLKSLEI 108 (497)
Q Consensus 40 ~sp~g~~lasg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~~~~~~~~~ 108 (497)
+||||+.|+++.. +..|.+||..+.+. +.++.--. +++. .
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-----------------------~~~i~~p~~p~~~------~ 103 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-----------------------IADIELPEGPRFL------V 103 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-----------------------EeEEccCCCchhh------c
Confidence 9999998877765 67999999998754 22222111 0000 0
Q ss_pred ccceeEEEEEecCCCCEEEEEe-C-CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILST-N-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 186 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s-~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (497)
-..-..+++ ++||++++... . +..|.+.|+.+++.......+... . ++............
T Consensus 104 ~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~----~--------vy~t~e~~~~~~~~---- 165 (352)
T TIGR02658 104 GTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY----H--------IFPTANDTFFMHCR---- 165 (352)
T ss_pred cCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc----E--------EEEecCCccEEEee----
Confidence 011235666 78999999775 3 799999999998876543332111 0 11110001111111
Q ss_pred ccCcceEEEeecCCccc--eeeeeeccCCCCCeeE-EEeCC-CCCEEEEEcCCeEEEEeCccCc----eeeEEeecCCCc
Q 010933 187 TENMATKIANVGNSVHA--RCQKVYPHAHDFNINS-ISNNS-DCETFVSADDLRINLWNLEISD----QCFNIVDMKPSN 258 (497)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~ 258 (497)
++......++..... .....+ .....++.. -.+.+ +|+.+..+.+|.|.+.|+...+ ....++......
T Consensus 166 --Dg~~~~v~~d~~g~~~~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR02658 166 --DGSLAKVGYGTKGNPKIKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKA 242 (352)
T ss_pred --cCceEEEEecCCCceEEeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccc
Confidence 111111111111100 011111 111111100 03345 8888888855999999965222 122211000000
Q ss_pred cCCCCCCeEEEEEeCCCCcEEEEEe----------CCCeEEEEEccCCcccccccceecccccccCCccccccccccccE
Q 010933 259 MDDLTEVITSAEFHPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 328 (497)
Q Consensus 259 ~~~~~~~i~~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 328 (497)
-.-....+.-++++|++ +.+++.. ..+.|.++|..+++.+ ..+.. ...+..
T Consensus 243 ~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~v--------------G~~~~~ 303 (352)
T TIGR02658 243 DGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIEL--------------GHEIDS 303 (352)
T ss_pred cccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeC--------------CCceee
Confidence 00022334459999999 6666632 1258999999998765 33332 146889
Q ss_pred EEEeeCCC-EEEEEe--cCeEEEEecCCCCceeeee
Q 010933 329 IKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF 361 (497)
Q Consensus 329 ~~~s~~g~-~l~~~~--~~~i~lwd~~~~~~~~~~~ 361 (497)
++++||++ +|++.. .+.|.++|..+ ++.+.++
T Consensus 304 iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 304 INVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred EEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 99999999 777654 38899999987 8888877
No 282
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.97 E-value=1e-06 Score=84.09 Aligned_cols=224 Identities=10% Similarity=0.022 Sum_probs=108.7
Q ss_pred CEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010933 227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 305 (497)
Q Consensus 227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 305 (497)
..++.+ .++.++.||.+++....+. ........ .... .+.... + ..++.+..++.+..+|.++|+......
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG~~~W~~-~~~~~~~~-~~~~-~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~-- 217 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATGERLWTY-SRVTPALT-LRGS-ASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQR-- 217 (377)
T ss_pred CEEEEECCCCeEEEEEcCCCceeeEE-ccCCCcee-ecCC-CCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeec--
Confidence 455566 8999999999844433322 11100000 0000 111122 2 357778889999999999987542110
Q ss_pred ecccccccCCccccccccccc-cEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCcccee
Q 010933 306 LRDAAESHGSKSFFTEIIASI-SDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 384 (497)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (497)
+.. ........ ....+ ....+ .++..++++.++.++.||.++ ++.+........ .
T Consensus 218 ~~~-~~g~~~~~----~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~t-G~~~W~~~~~~~-----------------~ 273 (377)
T TIGR03300 218 VAL-PKGRTELE----RLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRS-GRVLWKRDASSY-----------------Q 273 (377)
T ss_pred ccc-CCCCCchh----hhhccCCccEE-ECCEEEEEEcCCEEEEEECCC-CcEEEeeccCCc-----------------c
Confidence 000 00000000 00001 11122 234344444569999999986 776665542111 1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc-ceeeeEeecCCCcccccccceeEeeccCc-eec--CCCC
Q 010933 385 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN-ENRKPILQAAPRARRSSLSNLTRGLYRQA-HEN--SSSG 460 (497)
Q Consensus 385 ~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw--~~~~ 460 (497)
... .++..|+.++.||.++.+|..+++.+ ........ ........ + ..+.+++.+|. .++ .+++
T Consensus 274 ~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~~~~ssp~i~----g-----~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 274 GPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKNDELKYRQLTAPAVV----G-----GYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred Cce--EeCCEEEEECCCCeEEEEECCCCcEE-EccccccCCccccCEEE----C-----CEEEEEeCCCEEEEEECCCCC
Confidence 222 24667888899999999999988544 22211111 11111111 1 23677777777 666 2343
Q ss_pred CcccccccCCCeEEEEEecCCCEEEEEe-CCceEEE
Q 010933 461 HHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH 495 (497)
Q Consensus 461 ~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~ 495 (497)
......-+...+..--.-.+++ |.+++ ++.+|.|
T Consensus 342 ~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 342 FVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence 3333322232222221222444 55555 5558776
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.3e-07 Score=90.79 Aligned_cols=390 Identities=13% Similarity=0.100 Sum_probs=210.9
Q ss_pred CCcceEEEEEcCC------------CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCc
Q 010933 31 DVDIVSAIEFDKT------------GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 98 (497)
Q Consensus 31 h~~~I~~i~~sp~------------g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 98 (497)
|...|+.+.|.|. .-+||++...|.|.+||...+.. +..++.|.
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----------------------~~~l~~~~- 109 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----------------------INWLSHSN- 109 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----------------------hhhhcCCC-
Confidence 7889999999873 12678888999999999977633 55566777
Q ss_pred ccccccccccccceeEEEEEecCC-C-CEEEEEeCCccEEEeecCchheeccccCCCCCccc---------cccccccc-
Q 010933 99 EFDYLKSLEIEEKINRVRWCAAPN-G-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVS---------SENTLLAE- 166 (497)
Q Consensus 99 ~~~~~~~~~~~~~i~~l~~~~s~~-~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~- 166 (497)
.+|.+++|.+..+ . ..|++-....++.+|+..+|+......+....-.| .+......
T Consensus 110 -----------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 110 -----------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred -----------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence 8899999987544 3 35555577889999999888654433322211100 00000000
Q ss_pred ----------------cCccccCCC--------------------CCcccc--cccc--cc----------cCcceEEEe
Q 010933 167 ----------------KNFMNEHNP--------------------PSFAHG--YHLE--WT----------ENMATKIAN 196 (497)
Q Consensus 167 ----------------~~~~~~~~~--------------------~~~~~~--~~~~--~~----------~~~~~~~~~ 196 (497)
|..+.+... +...++ +++. +. =...+.+.|
T Consensus 179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d 258 (1062)
T KOG1912|consen 179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD 258 (1062)
T ss_pred eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence 111111100 000000 0000 10 122444555
Q ss_pred ecCCccceeeeeeccCCCCCeeEEEeCCCC--CEEEEE-cCCeEEEEeCccCceeeEEeecCC-CccC--------CCCC
Q 010933 197 VGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKP-SNMD--------DLTE 264 (497)
Q Consensus 197 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~--------~~~~ 264 (497)
++.. .|+.+. .-..+.+.-+.+-|++ ..|.+. .||.+.+|-.+......++-.... ..+. -.+-
T Consensus 259 le~~---~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~ 334 (1062)
T KOG1912|consen 259 LEYE---CCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF 334 (1062)
T ss_pred chhh---ceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhc
Confidence 5533 233332 2223444456666654 467777 999999997663221111100000 0000 0011
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc-------eeccccccc--C-----CccccccccccccEEE
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR-------ILRDAAESH--G-----SKSFFTEIIASISDIK 330 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------~~~~~~~~~--~-----~~~~~~~~~~~i~~~~ 330 (497)
.+......|..++.++.--.+|.+.+|.+++++.-..... .|....... . ......+|.....+..
T Consensus 335 rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~ 414 (1062)
T KOG1912|consen 335 RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVR 414 (1062)
T ss_pred ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeee
Confidence 1222333454335566666788999999987653211000 000000000 0 0000124444444444
Q ss_pred Eee-----------CC-------CEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC
Q 010933 331 FAN-----------DG-------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD 391 (497)
Q Consensus 331 ~s~-----------~g-------~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 391 (497)
..| .| .++|.|+. |+|-++|+.+ +.....+..|...+ .++.|-..
T Consensus 415 ~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst-~~v~~~fsvht~~V---------------kgleW~g~ 478 (1062)
T KOG1912|consen 415 MRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST-NAVAASFSVHTSLV---------------KGLEWLGN 478 (1062)
T ss_pred cccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc-hhhhhhhcccccce---------------eeeeeccc
Confidence 332 22 24566866 9999999987 88888888888765 46666655
Q ss_pred CCEE---------EEEeCCCcEEEEEcCCCCcceEE--EeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCC-
Q 010933 392 GLHF---------ATGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSS- 458 (497)
Q Consensus 392 ~~~l---------~s~~~dg~i~vw~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~- 458 (497)
.+++ ++|+.-+.+.|-|+++|-..... -+....||+.+..+. -+++ ++....+.- .+|..
T Consensus 479 sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~--~~~y-----Lai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 479 SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSS--SGRY-----LAILFRREPLEIWDLK 551 (1062)
T ss_pred eeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecc--cCce-----EEEEecccchHHHhhc
Confidence 4433 24445567889999998543222 234457888888887 6777 899988888 99933
Q ss_pred CCCcccccccCCC-eEEEEEe-cCCC
Q 010933 459 SGHHELSYNLSSK-LLHLAWH-PTTN 482 (497)
Q Consensus 459 ~~~~~~~~~~~~~-i~~l~~~-p~~~ 482 (497)
...........=+ |+.+.|+ |.-+
T Consensus 552 t~~~lr~mS~a~P~it~leWsl~~~~ 577 (1062)
T KOG1912|consen 552 TLRMLRLMSLALPLITVLEWSLPKHP 577 (1062)
T ss_pred cchHHHHHhhcCCcEEEEeecccCCC
Confidence 2222222223335 8999998 4433
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=4.3e-07 Score=86.65 Aligned_cols=150 Identities=11% Similarity=0.089 Sum_probs=89.4
Q ss_pred CCCeeEEEeCCCCCEEEEE--c--CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC-CC--
Q 010933 214 DFNINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RG-- 286 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg-- 286 (497)
........|+|||+.++.. . +..|+++|+. ++.... +..+........|+|+| +.|+..+. .+
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-~g~~~~--------LT~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~ 301 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-TKTLTQ--------ITNYPGIDVNGNFVEDD-KRIVFVSDRLGYP 301 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-CCcEEE--------cccCCCccCccEECCCC-CEEEEEECCCCCc
Confidence 4445567899999988753 2 4578888877 444333 22222223455899999 66666654 33
Q ss_pred eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec----------CeEEEEecCCCCc
Q 010933 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----------MNLKLWDIRMDST 356 (497)
Q Consensus 287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----------~~i~lwd~~~~~~ 356 (497)
.|.+.|+.+++.. +.... +. ....|+|||++|+.... ..|.+.|+.. +.
T Consensus 302 ~Iy~~dl~~g~~~----rlt~~---------------g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~ 360 (419)
T PRK04043 302 NIFMKKLNSGSVE----QVVFH---------------GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY 360 (419)
T ss_pred eEEEEECCCCCeE----eCccC---------------CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence 6777788776532 11111 11 12489999998876421 2677888864 43
Q ss_pred eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC-C--cEEEEEcCC
Q 010933 357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-N--LLRIFSHGV 411 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d-g--~i~vw~~~~ 411 (497)
...+...... ....|+|||+.|+..+.+ + .+.+.+++.
T Consensus 361 -~~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 361 -IRRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred -eEECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3333322111 258999999988765543 3 355566643
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.1e-08 Score=97.19 Aligned_cols=239 Identities=15% Similarity=0.157 Sum_probs=156.4
Q ss_pred eeEEEeCCCC--CEEEEE-cCCeEEEEeCcc-CceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933 217 INSISNNSDC--ETFVSA-DDLRINLWNLEI-SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 217 v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 292 (497)
|-...|+|.. .+-+.. ....-.+|++.. ..+.+..+ +-+|...|+.+-|+|..+..+++++.|-.+..||
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~------lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd 143 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV------LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWD 143 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEE------EecCccceeccccCCCCCcceeeccccccceeee
Confidence 4445565532 233333 666677888753 22344433 6789999999999999988999999999999999
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEEEecCeEEEEecCCCCceeeeeeecccccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 371 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 371 (497)
+++..........+ ......++|+- ++..+|+...+.|++||++.++.++..+++|...+
T Consensus 144 ~rSp~~p~ys~~~w----------------~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v--- 204 (1081)
T KOG0309|consen 144 MRSPHRPFYSTSSW----------------RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV--- 204 (1081)
T ss_pred ccCCCcceeeeecc----------------cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee---
Confidence 99864321111111 23567888986 45556655558999999999889999999976643
Q ss_pred cccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEee-
Q 010933 372 CDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGL- 449 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~- 449 (497)
..++|..- ...+.+.+.||+|+.||.+..............+++.-.+.|-.++.. .....|+
T Consensus 205 ------------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~---~mp~~G~n 269 (1081)
T KOG0309|consen 205 ------------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC---IMPMVGGN 269 (1081)
T ss_pred ------------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE---eccccCCe
Confidence 45666542 346789999999999999877665555666677888888777545432 0011111
Q ss_pred ------ccCc-eec---CCCCCcccccccCCCeEEEEEecCCC----------EEEEEe-CCceEEE
Q 010933 450 ------YRQA-HEN---SSSGHHELSYNLSSKLLHLAWHPTTN----------LIACAN-GNSLFFH 495 (497)
Q Consensus 450 ------~d~~-~iw---~~~~~~~~~~~~~~~i~~l~~~p~~~----------~la~~~-~~~~~i~ 495 (497)
.+.. ..| .....+....+|+..|...-|-..+. .|++=+ +..+.+|
T Consensus 270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 1111 334 23345666778888887777755443 355544 4446666
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=2.5e-08 Score=85.29 Aligned_cols=243 Identities=13% Similarity=0.099 Sum_probs=147.6
Q ss_pred CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC------------CCeEEEEEeCC-CCcE
Q 010933 213 HDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT------------EVITSAEFHPI-YCNL 278 (497)
Q Consensus 213 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~-~~~~ 278 (497)
....|+++.|...|.++++| ..|.|.+|..+....+-..+- ..++.|+ ..|..+.|..+ +...
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~---teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFF---TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhh---hhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 34578999999999999999 899999998763332211000 1133342 56778887644 4567
Q ss_pred EEEEeCCCeEEEEEccCCcccccccce-----------------------eccccc--ccCCcc-ccccccccccEEEEe
Q 010933 279 LAYSSSRGFVRLVDMRQSALCDHSARI-----------------------LRDAAE--SHGSKS-FFTEIIASISDIKFA 332 (497)
Q Consensus 279 l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------------------~~~~~~--~~~~~~-~~~~~~~~i~~~~~s 332 (497)
++..+.|.+|++|-+....+....... +..|.. ...+.. .-..|.--|++++|+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 888899999999999875321100000 000000 001111 125677889999999
Q ss_pred eCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC-CEEEEEeCCCcEEEEEcCC
Q 010933 333 NDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 333 ~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~~~dg~i~vw~~~~ 411 (497)
.|.+.+++++|=.|.+|++................... -..-|++..|+|.. ..+...+..|.|++-|++.
T Consensus 182 sD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmee--------LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 182 SDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEE--------LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred CchheeeeccceeeeeccccccCCceEEEeccCccHHH--------HHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 99999999999999999987544333332222111100 01113689999964 4566777789999999985
Q ss_pred CCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCc
Q 010933 412 GSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNS 491 (497)
Q Consensus 412 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~ 491 (497)
.... -.+.. +.--..|+. ...-..+....|.++.|++.|+++++-+...
T Consensus 254 ~alc---------------dn~~k---------lfe~~~D~v-------~~~ff~eivsSISD~kFs~ngryIlsRdylt 302 (460)
T COG5170 254 SALC---------------DNSKK---------LFELTIDGV-------DVDFFEEIVSSISDFKFSDNGRYILSRDYLT 302 (460)
T ss_pred hhhc---------------cCchh---------hhhhccCcc-------cchhHHHHhhhhcceEEcCCCcEEEEeccce
Confidence 4211 11100 000000000 0111223345888999999999999999999
Q ss_pred eEEEeC
Q 010933 492 LFFHYA 497 (497)
Q Consensus 492 ~~i~~~ 497 (497)
+.||.+
T Consensus 303 vkiwDv 308 (460)
T COG5170 303 VKIWDV 308 (460)
T ss_pred EEEEec
Confidence 999963
No 287
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=1.2e-08 Score=106.01 Aligned_cols=186 Identities=17% Similarity=0.215 Sum_probs=137.9
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.++.- .|...+.++|+.||.|++|....++...
T Consensus 2210 ~v~r~~s--Hp~~~~Yltgs~dgsv~~~~w~~~~~v~------------------------------------------- 2244 (2439)
T KOG1064|consen 2210 NVRRMTS--HPSDPYYLTGSQDGSVRMFEWGHGQQVV------------------------------------------- 2244 (2439)
T ss_pred ceeeecC--CCCCceEEecCCCceEEEEeccCCCeEE-------------------------------------------
Confidence 3445544 4666789999999999999987665322
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.|+ ..-...|+.+.|+.+|+.+..+ .||.+.+|.+. .+.+. ..+.|......+
T Consensus 2245 ---~~r--------------t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~-------s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2245 ---CFR--------------TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYT-------SWQCHNKALSDF 2298 (2439)
T ss_pred ---Eee--------------ccCcchhhhhhhcccCCceeeeccCCceeecccC--Cccee-------ccccCCccccce
Confidence 222 1223788889999999999999 99999999987 33332 267888888888
Q ss_pred EEeCCCCcEEEEEeC---CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-Ce
Q 010933 270 EFHPIYCNLLAYSSS---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 345 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~ 345 (497)
.|-. ..+++++. ++.+.+||..-..... -+. ..|.+.++++++-|..++|++|+. |.
T Consensus 2299 ~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s---~v~-------------~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2299 RFIG---SLLATAGRSSDNRNVCLWDTLLPPMNS---LVH-------------TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred eeee---hhhhccccCCCCCcccchhcccCcccc---eee-------------eecCCCceEEEEcCcceEEEecCCcCc
Confidence 8876 34666643 7899999975432110 111 346789999999999999999865 99
Q ss_pred EEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 346 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 346 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
|++||++. .+++..++. +. ...++++|+..|.|+||++..-
T Consensus 2360 v~l~D~rq-rql~h~~~~------------------------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2360 VCLFDIRQ-RQLRHTFQA------------------------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEEeehHH-HHHHHHhhh------------------------hh-hhheeeccCcccceEEEEcccc
Confidence 99999986 666655542 22 4568999999999999999876
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.87 E-value=1.7e-06 Score=73.92 Aligned_cols=235 Identities=14% Similarity=0.171 Sum_probs=130.5
Q ss_pred EEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEE
Q 010933 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVR 116 (497)
Q Consensus 37 ~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~ 116 (497)
.++.+++|+.||.-. |..|-|-...+.-. ..+...+-.+.. ...-..++
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~---------------------si~~kcqVpkD~---------~PQWRkl~ 50 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFS---------------------SIIGKCQVPKDP---------NPQWRKLA 50 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCch---------------------heeEEEecCCCC---------CchheEEE
Confidence 367789999888764 66777766544211 011111111100 03356799
Q ss_pred EEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEe
Q 010933 117 WCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIAN 196 (497)
Q Consensus 117 ~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (497)
| +||+..||.+...|+|+++|+.+..+-.+..... ..
T Consensus 51 W--SpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~--------------------~~--------------------- 87 (282)
T PF15492_consen 51 W--SPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS--------------------FP--------------------- 87 (282)
T ss_pred E--CCCCcEEEEEcCCCeEEEEecccceeEEcCcccc--------------------cC---------------------
Confidence 9 7999999999999999999998755332211000 00
Q ss_pred ecCCccceeeeeeccCCCCCeeEEEeCC-------CCCEEEEEcCCeEEEEeCcc--Cc--eeeEEeecCCCcc-CCCCC
Q 010933 197 VGNSVHARCQKVYPHAHDFNINSISNNS-------DCETFVSADDLRINLWNLEI--SD--QCFNIVDMKPSNM-DDLTE 264 (497)
Q Consensus 197 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~l~~~~d~~i~iwd~~~--~~--~~~~~~~~~~~~~-~~~~~ 264 (497)
..-...|..+.|.+ ..++|+...+|.++-|-+.. .+ +....+ .+ ..+..
T Consensus 88 --------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf-----sf~~~yp~ 148 (282)
T PF15492_consen 88 --------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF-----SFSSHYPH 148 (282)
T ss_pred --------------CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE-----EecccCCC
Confidence 01112333333321 12355555777777776531 11 111111 12 23467
Q ss_pred CeEEEEEeCCCCcEEEEEeCC-C----------eEEEEEccCCcccccccceecccccccC---------Cccc---ccc
Q 010933 265 VITSAEFHPIYCNLLAYSSSR-G----------FVRLVDMRQSALCDHSARILRDAAESHG---------SKSF---FTE 321 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~d-g----------~i~v~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~ 321 (497)
.|.++.++|.. ++|++|+.. . -+.-|.+-++..-.+.....+....... .... ...
T Consensus 149 Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 149 GINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred ceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecccc
Confidence 89999999998 777777542 1 2555655444322211111111010000 0000 122
Q ss_pred ccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeeeeeeccc
Q 010933 322 IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 322 ~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
....|..|.+||||++||+.. .|.|.+|++.. -+....++-++.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs-L~~~~~W~~~eq 272 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS-LRLQRSWKQDEQ 272 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCc-chhhcccchhhC
Confidence 357899999999999999985 49999999975 566666654443
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.86 E-value=3.6e-06 Score=77.28 Aligned_cols=263 Identities=11% Similarity=0.080 Sum_probs=157.1
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
-++..++| +|.|.+|++....+ |.+|.-.....
T Consensus 33 ~p~~~~~~--SP~G~~l~~~~~~~-V~~~~g~~~~~-------------------------------------------- 65 (561)
T COG5354 33 WPVAYVSE--SPLGTYLFSEHAAG-VECWGGPSKAK-------------------------------------------- 65 (561)
T ss_pred cchhheee--cCcchheehhhccc-eEEccccchhh--------------------------------------------
Confidence 66888999 78998888877654 88887665441
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c---------------CCeEEEEeCccCceeeEEee
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------------DLRINLWNLEISDQCFNIVD 253 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~---------------d~~i~iwd~~~~~~~~~~~~ 253 (497)
+++. . ...|..+.|+|.+++|.+= . +..+.+||+. ++..+..+
T Consensus 66 ---------------l~~~---~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~-sg~iv~sf- 124 (561)
T COG5354 66 ---------------LVRF---R-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA-SGMIVFSF- 124 (561)
T ss_pred ---------------eeee---e-cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc-CceeEeec-
Confidence 1111 1 2357778888888888762 1 2358999999 56555442
Q ss_pred cCCCccCCCCCC--eE-EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEE
Q 010933 254 MKPSNMDDLTEV--IT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 254 ~~~~~~~~~~~~--i~-~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
.....+ .. -+.|+-+. +++|-. ....++|+++ ++.......+.+.. ..|....
T Consensus 125 ------~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~---------------~gi~dFs 180 (561)
T COG5354 125 ------NGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP---------------VGILDFS 180 (561)
T ss_pred ------cccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhhccc---------------cceeeEE
Confidence 222222 33 56788776 665544 4457999998 54433222233322 4688888
Q ss_pred EeeCCC--EEEE------EecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe---
Q 010933 331 FANDGQ--HLLS------RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--- 399 (497)
Q Consensus 331 ~s~~g~--~l~~------~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~--- 399 (497)
|+|.|+ -|+. +..+.+++|.+.. ++.+.+..-.... . ..+.|.+.|++|+.--
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~-~s~l~tk~lfk~~-----------~----~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPK-NSVLVTKNLFKVS-----------G----VQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccC-CCeeeeeeeEeec-----------c----cEEEEecCCceEEEEEEEe
Confidence 998643 3443 2238999999975 5554443322211 0 3799999999876321
Q ss_pred --------CCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCC
Q 010933 400 --------YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSS 470 (497)
Q Consensus 400 --------~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~ 470 (497)
.+.+++|+++... .+ .....-.++|...+|.|..+... +++|-.+.. .++..... .......+
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~-~i-~V~~~~~~pVhdf~W~p~S~~F~-----vi~g~~pa~~s~~~lr~N-l~~~~Pe~ 316 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITER-SI-PVEKDLKDPVHDFTWEPLSSRFA-----VISGYMPASVSVFDLRGN-LRFYFPEQ 316 (561)
T ss_pred eecccceeccceEEEEeeccc-cc-ceeccccccceeeeecccCCcee-----EEecccccceeecccccc-eEEecCCc
Confidence 1356889998733 22 22226689999999998644333 445444444 44422222 11223333
Q ss_pred CeEEEEEecCCCEEEEEe
Q 010933 471 KLLHLAWHPTTNLIACAN 488 (497)
Q Consensus 471 ~i~~l~~~p~~~~la~~~ 488 (497)
+=+-+.|+|.+++++.++
T Consensus 317 ~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 317 KRNTIFFSPHERYILFAG 334 (561)
T ss_pred ccccccccCcccEEEEec
Confidence 444566777777766665
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=8.5e-07 Score=85.30 Aligned_cols=258 Identities=16% Similarity=0.179 Sum_probs=165.0
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
...-.+++|+|.| +||.|+.. .|.+-|..+- +.+..+.-|. ..
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~-----------------------q~iqsie~h~------------s~ 57 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSL-----------------------QLIQSIELHQ------------SA 57 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhh-----------------------hhhhccccCc------------cc
Confidence 3447889999987 78888764 7888887653 4477777888 88
Q ss_pred eeEEEEEecC--------C--CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccc
Q 010933 112 INRVRWCAAP--------N--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 181 (497)
Q Consensus 112 i~~l~~~~s~--------~--~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (497)
|+.++|.|-| . .-.++++...|.|.+||+..+..+..
T Consensus 58 V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~--------------------------------- 104 (1062)
T KOG1912|consen 58 VTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW--------------------------------- 104 (1062)
T ss_pred eeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh---------------------------------
Confidence 9999998622 1 12355556779999999987653321
Q ss_pred cccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCC---CCC-EEEEE-cCCeEEEEeCccCceeeEEeecCC
Q 010933 182 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKP 256 (497)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 256 (497)
+..|..++..++|-+ +.+ .|++- ....+.+|+..++++..+
T Consensus 105 ----------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk------ 150 (1062)
T KOG1912|consen 105 ----------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK------ 150 (1062)
T ss_pred ----------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec------
Confidence 256777888888854 343 34444 788999999996666554
Q ss_pred CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc---eecccccccCC-------ccccccc----
Q 010933 257 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAESHGS-------KSFFTEI---- 322 (497)
Q Consensus 257 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~---- 322 (497)
.........++.++|-.++.+..-+..|.+.+.+.-.........+ +-..|.+.+.. .......
T Consensus 151 --~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 151 --YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred --cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 2333456677899987667777777788877776543222211111 11221110000 0000000
Q ss_pred -cccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCC--CEEEEE
Q 010933 323 -IASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG--LHFATG 398 (497)
Q Consensus 323 -~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~s~ 398 (497)
.......+|+|.-+.++.... ..+.++|++- ..++.......+.+ --+.|-|++ ..|+++
T Consensus 229 fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~a---------------kfv~vlP~~~rd~Lfcl 292 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGA---------------KFVDVLPDPRRDALFCL 292 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCc---------------ceeEeccCCCcceEEEE
Confidence 001234677887665555544 8999999986 77777777666543 236777764 579999
Q ss_pred eCCCcEEEEEcCC
Q 010933 399 SYSNLLRIFSHGV 411 (497)
Q Consensus 399 ~~dg~i~vw~~~~ 411 (497)
..||.+.+|-.+.
T Consensus 293 H~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 293 HSNGRLTIRVRKE 305 (1062)
T ss_pred ecCCeEEEEEeec
Confidence 9999999998665
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.82 E-value=9.1e-08 Score=79.90 Aligned_cols=142 Identities=12% Similarity=0.060 Sum_probs=90.9
Q ss_pred CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc---------cCcceE
Q 010933 123 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT---------ENMATK 193 (497)
Q Consensus 123 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 193 (497)
+..++++..||.+.+.+.+.-. .... ..+.......+.+++..+.+. .-+...
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~-~~~~-----------------~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDL-ALMS-----------------RIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred CCceEecCCCceEEEEechHHH-hhhh-----------------hcccccccccccceeecccEEecCCcceEeecccee
Confidence 4578999999999999887621 1110 011112222223333222221 122344
Q ss_pred EEeecCCccceeeeeeccCC--CCCeeEEEeCCCCCEE-EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 194 IANVGNSVHARCQKVYPHAH--DFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
.|+.. ++.++...+ ...|.+++-+|..+.+ ++| .||.+-+||.+...... ..+..|+..|..+
T Consensus 163 a~~~~------p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i~eV 229 (319)
T KOG4714|consen 163 ANTLD------PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEIWEV 229 (319)
T ss_pred eeccc------ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhhhhe
Confidence 45444 333332222 3348889999865555 556 99999999999432222 2378899999999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
-|+|..+..|+++++||.+--||..+
T Consensus 230 ~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 230 HFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eccCCCchheeEecCCCcEEEEcCCC
Confidence 99998888999999999999999875
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=8.6e-06 Score=69.75 Aligned_cols=183 Identities=20% Similarity=0.184 Sum_probs=109.7
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC-----CcEEEEEeCCCeEE
Q 010933 216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY-----CNLLAYSSSRGFVR 289 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~i~ 289 (497)
.-.-++|+||+..||.+ ..|+|++||+. +.....+ .............|..+.|.+.. +..|++-..+|.++
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I-~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVI-PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEc-CcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 34579999999999999 99999999998 4444432 21111122234667777775432 23677778888888
Q ss_pred EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c--C---------eEEEEecCCCCce
Q 010933 290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y--M---------NLKLWDIRMDSTP 357 (497)
Q Consensus 290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--~---------~i~lwd~~~~~~~ 357 (497)
=|-+..+... ...+.|.. .....+...|.++.++|..++|+.|+ . . -+.-|.+-.+...
T Consensus 123 Sy~vs~gt~q----~y~e~hsf-----sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 123 SYLVSVGTNQ----GYQENHSF-----SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY 193 (282)
T ss_pred eEEEEcccCC----cceeeEEE-----EecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc
Confidence 7776433211 11111111 11122356899999999988887753 1 1 3567776542211
Q ss_pred eeeeeecccccc---------cccc------cC-CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 358 VATFKIHEHLRP---------KLCD------LY-NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 358 ~~~~~~~~~~~~---------~~~~------~~-~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
.+.....+..+. .+.. .+ +.+.+ ..|..||||+.||+...+|.|.+|++.+-
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i---~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGI---FKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCce---EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 111111111110 0000 01 12333 59999999999999999999999999875
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=4.5e-08 Score=90.16 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=118.3
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+|.+.|.+++--.+.+-+++++.|.+|++|.+....- ......+.-+++.|+
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----------------~~~tsaCQfTY~aHk----------- 784 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----------------EIGTSACQFTYQAHK----------- 784 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----------------ccccceeeeEhhhcc-----------
Confidence 46888898888777778889999999999999864211 011223456778898
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.+|.++.|. .+.+++ ++.|+.|.+||.--+......
T Consensus 785 -k~i~~igfL--~~lr~i--~ScD~giHlWDPFigr~Laq~--------------------------------------- 820 (1034)
T KOG4190|consen 785 -KPIHDIGFL--ADLRSI--ASCDGGIHLWDPFIGRLLAQM--------------------------------------- 820 (1034)
T ss_pred -Ccccceeee--ecccee--eeccCcceeecccccchhHhh---------------------------------------
Confidence 889999995 454454 456789999998766533210
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCe
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 266 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 266 (497)
.|+.. .+....|.++. +-+...+++ + ...+|+++|.+..+- ...+.+ -.-.+....+
T Consensus 821 -----~dapk------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~kV--cna~~Pna~~ 879 (1034)
T KOG4190|consen 821 -----EDAPK------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEW-TCELKV--CNAPGPNALT 879 (1034)
T ss_pred -----hcCcc------------cCCCceeEecc-cCcchheeeeccchhhheeeecccccc-eeeEEe--ccCCCCchhe
Confidence 01100 12223333332 112333433 4 789999999884332 211111 1234566788
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCccc
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 299 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 299 (497)
+++++.+.| +.++.+-.+|.|.+.|.|+|+.+
T Consensus 880 R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 880 RAIAVADKG-NKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred eEEEeccCc-chhhHHhcCCcEEEEecCCCcee
Confidence 999999999 99999999999999999999755
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=3.3e-06 Score=89.76 Aligned_cols=133 Identities=9% Similarity=0.117 Sum_probs=81.8
Q ss_pred CeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCC---C---ccC--------CCCCCeEEEEEeCCCCcEE
Q 010933 216 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKP---S---NMD--------DLTEVITSAEFHPIYCNLL 279 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~---~---~~~--------~~~~~i~~~~~~~~~~~~l 279 (497)
....++++|+++.|+.+ .++.|++||+...+... .....+ . .+. ..-.....++++++| .++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LY 818 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIY 818 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-EEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEE
Confidence 45679999999866554 78999999988433211 100000 0 000 011234689999999 888
Q ss_pred EEEeCCCeEEEEEccCCcccccccceeccccc-ccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCc
Q 010933 280 AYSSSRGFVRLVDMRQSALCDHSARILRDAAE-SHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDST 356 (497)
Q Consensus 280 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~ 356 (497)
++-+.++.|++||..++... ..... .. .........+.-.....++++++|+++++-+ ++.|++||+.+ ++
T Consensus 819 VADs~N~rIrviD~~tg~v~----tiaG~-G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~-~~ 891 (1057)
T PLN02919 819 VADSYNHKIKKLDPATKRVT----TLAGT-GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK-GE 891 (1057)
T ss_pred EEECCCCEEEEEECCCCeEE----EEecc-CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC-Cc
Confidence 88888999999999876532 11110 00 0000001112223567899999999777654 49999999986 44
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.76 E-value=1.7e-05 Score=70.61 Aligned_cols=226 Identities=14% Similarity=0.135 Sum_probs=135.8
Q ss_pred EEEEcC-CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933 37 AIEFDK-TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 115 (497)
Q Consensus 37 ~i~~sp-~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l 115 (497)
++.|.+ +|.++.+--..+.|..|+..++.. ..+.. .....+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~------------------------~~~~~--------------~~~~G~ 45 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV------------------------EVIDL--------------PGPNGM 45 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE------------------------EEEES--------------SSEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE------------------------EEEec--------------CCCceE
Confidence 578888 677777766789999999877642 11111 225677
Q ss_pred EEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEE
Q 010933 116 RWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA 195 (497)
Q Consensus 116 ~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (497)
++. .++ ..|+.+..++ +.++|..+++...+.....
T Consensus 46 ~~~-~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~------------------------------------------ 80 (246)
T PF08450_consen 46 AFD-RPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPD------------------------------------------ 80 (246)
T ss_dssp EEE-CTT-SEEEEEETTC-EEEEETTTTEEEEEEEEET------------------------------------------
T ss_pred EEE-ccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccC------------------------------------------
Confidence 773 145 5566666554 4555888776544321100
Q ss_pred eecCCccceeeeeeccC-CCCCeeEEEeCCCCCEEEEE-cC--------CeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 196 NVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
.. .....+.+++.++|++.++. .. +.|..++.. ++.... ...-..
T Consensus 81 ---------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~--------~~~~~~ 135 (246)
T PF08450_consen 81 ---------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV--------ADGLGF 135 (246)
T ss_dssp ---------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE--------EEEESS
T ss_pred ---------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE--------ecCccc
Confidence 11 34467899999999977774 22 557777766 332222 122345
Q ss_pred eEEEEEeCCCCcEEE-EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c
Q 010933 266 ITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y 343 (497)
Q Consensus 266 i~~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~ 343 (497)
...++|+|++ +.|+ +-+..+.|..+++..........+.+.. +....+..-.+++..+|++.++.- .
T Consensus 136 pNGi~~s~dg-~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 136 PNGIAFSPDG-KTLYVADSFNGRIWRFDLDADGGELSNRRVFID----------FPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEEEEETTS-SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-----------SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred ccceEECCcc-hheeecccccceeEEEeccccccceeeeeeEEE----------cCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 6899999999 6555 5567889999998743321111122211 000112467899999998777764 4
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc-CCCCEEEEE
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATG 398 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~s~ 398 (497)
+.|.+++.+ ++.+..+....... ++++|. ++.+.|+..
T Consensus 205 ~~I~~~~p~--G~~~~~i~~p~~~~---------------t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 205 GRIVVFDPD--GKLLREIELPVPRP---------------TNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TEEEEEETT--SCEEEEEE-SSSSE---------------EEEEEESTTSSEEEEE
T ss_pred CEEEEECCC--ccEEEEEcCCCCCE---------------EEEEEECCCCCEEEEE
Confidence 999999986 78888777663321 689994 666666543
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.74 E-value=8.4e-06 Score=77.79 Aligned_cols=275 Identities=13% Similarity=0.099 Sum_probs=143.1
Q ss_pred CCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCC
Q 010933 43 TGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN 122 (497)
Q Consensus 43 ~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~ 122 (497)
.+..+++++.+|.|.-+|..+++. .....+.+.- ...... +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~---------------------~W~~~~~~~~--------------~~~p~v----~ 104 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKR---------------------LWRVDLDERL--------------SGGVGA----D 104 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcE---------------------eeeecCCCCc--------------ccceEE----c
Confidence 466888889999999999988887 1111122111 112234 1
Q ss_pred CCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcceEEEeecCCcc
Q 010933 123 GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH 202 (497)
Q Consensus 123 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (497)
+..++.++.++.+..+|..+|+.............. ....++. +++. ..++.+..+|....
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~---p~v~~~~-----------v~v~---~~~g~l~a~d~~tG-- 165 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP---PLVANGL-----------VVVR---TNDGRLTALDAATG-- 165 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC---CEEECCE-----------EEEE---CCCCeEEEEEcCCC--
Confidence 346777778888888888877765544433332100 0000111 1111 01445555555422
Q ss_pred ceeeeeeccCCCCCe-----eEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC--CC---e-EEEE
Q 010933 203 ARCQKVYPHAHDFNI-----NSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSAE 270 (497)
Q Consensus 203 ~~~~~~~~~~h~~~v-----~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---i-~~~~ 270 (497)
+.+..+ ......+ .+... .+..++.+ .++.+..+|.+++...... ... ...+.. .. + ....
T Consensus 166 -~~~W~~-~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~-~~~--~~~g~~~~~~~~~~~~~p~ 238 (377)
T TIGR03300 166 -ERLWTY-SRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ-RVA--LPKGRTELERLVDVDGDPV 238 (377)
T ss_pred -ceeeEE-ccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee-ccc--cCCCCCchhhhhccCCccE
Confidence 111111 1100000 01111 12356677 8899999998844433221 000 000000 00 0 1111
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEE
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLW 349 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lw 349 (497)
+. + ..+++++.+|.++.+|.++++.. +.. .. ........ ++..++.+ .+|.+..+
T Consensus 239 ~~--~-~~vy~~~~~g~l~a~d~~tG~~~------W~~-~~------------~~~~~p~~--~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 239 VD--G-GQVYAVSYQGRVAALDLRSGRVL------WKR-DA------------SSYQGPAV--DDNRLYVTDADGVVVAL 294 (377)
T ss_pred EE--C-CEEEEEEcCCEEEEEECCCCcEE------Eee-cc------------CCccCceE--eCCEEEEECCCCeEEEE
Confidence 22 3 56778888999999999988644 222 00 11122222 34455555 56999999
Q ss_pred ecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc
Q 010933 350 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 424 (497)
Q Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 424 (497)
|..+ ++.+.......... . ..... .+..|++++.+|.|+++|..+++.+ ..++.+..
T Consensus 295 d~~t-G~~~W~~~~~~~~~------------~--ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~-~~~~~~~~ 351 (377)
T TIGR03300 295 DRRS-GSELWKNDELKYRQ------------L--TAPAV--VGGYLVVGDFEGYLHWLSREDGSFV-ARLKTDGS 351 (377)
T ss_pred ECCC-CcEEEccccccCCc------------c--ccCEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEcCCC
Confidence 9986 77665543211110 0 12222 4668999999999999999988554 56655544
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=1.8e-05 Score=69.96 Aligned_cols=234 Identities=15% Similarity=0.202 Sum_probs=135.9
Q ss_pred eEEEEEcC-CCCEEEEeecCC-eEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 35 VSAIEFDK-TGDYLAVGDRGG-RVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 35 I~~i~~sp-~g~~lasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
-..++.+| .+..+|.+-.-| ...+||..+++..... ....-..|-||-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~---------------~a~~gRHFyGHg--------------- 56 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL---------------WAPPGRHFYGHG--------------- 56 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE---------------cCCCCCEEecCE---------------
Confidence 34678888 566777777665 4678999887641000 001123355564
Q ss_pred eEEEEEecCCCCEEEEEe-----CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccc
Q 010933 113 NRVRWCAAPNGSMFILST-----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 187 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (497)
.| ++||++|++.- ..|.|-|||...+- .++
T Consensus 57 ---~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~~-~ri--------------------------------------- 91 (305)
T PF07433_consen 57 ---VF--SPDGRLLYTTENDYETGRGVIGVYDAARGY-RRI--------------------------------------- 91 (305)
T ss_pred ---EE--cCCCCEEEEeccccCCCcEEEEEEECcCCc-EEE---------------------------------------
Confidence 67 78999999974 34888999987322 111
Q ss_pred cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcC--------CeEE-----------EEeCccCcee
Q 010933 188 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADD--------LRIN-----------LWNLEISDQC 248 (497)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d--------~~i~-----------iwd~~~~~~~ 248 (497)
..+ ..|.-.-..+.+.|||+.|+.+.. |..+ +.|.. ++..
T Consensus 92 -------------------~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~l 150 (305)
T PF07433_consen 92 -------------------GEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGAL 150 (305)
T ss_pred -------------------eEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCce
Confidence 111 333333445778888877776421 2222 33333 2333
Q ss_pred eEEeecCCCcc--CCCCCCeEEEEEeCCCCcEEEEEeCCC-------eEEEEEccCCcccccccceecccccccCCcccc
Q 010933 249 FNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQSALCDHSARILRDAAESHGSKSFF 319 (497)
Q Consensus 249 ~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~dg-------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (497)
+..+ .+ ..|...|+.++++++| ..++..-..| .|-+++. ++.. ..+.. +....
T Consensus 151 l~q~-----~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~--g~~~----~~~~~------p~~~~ 212 (305)
T PF07433_consen 151 LEQV-----ELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRR--GGAL----RLLPA------PEEQW 212 (305)
T ss_pred eeee-----ecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcC--CCcc----eeccC------ChHHH
Confidence 3322 24 4477899999999998 5444433322 1223322 2111 11111 00001
Q ss_pred ccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 010933 320 TEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 397 (497)
Q Consensus 320 ~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 397 (497)
..-.+.+-+|++++++.++++.+- +.+.+||..+ ++.+........ ..++-.+++ ++++
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~-----------------cGva~~~~~-f~~s 273 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDA-----------------CGVAPTDDG-FLVS 273 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCce-----------------eeeeecCCc-eEEe
Confidence 122367899999999998887653 9999999986 887777665543 367776666 6666
Q ss_pred EeCC
Q 010933 398 GSYS 401 (497)
Q Consensus 398 ~~~d 401 (497)
.+..
T Consensus 274 sG~G 277 (305)
T PF07433_consen 274 SGQG 277 (305)
T ss_pred CCCc
Confidence 5553
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.71 E-value=5.9e-05 Score=67.18 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=105.2
Q ss_pred eeEEEeC-CCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCC-CCCCeEEEEEeCCCCcEEEEEeCC--------C
Q 010933 217 INSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSR--------G 286 (497)
Q Consensus 217 v~~~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d--------g 286 (497)
...+.+. +++.++++.. +.+.++|.. .++...+.... ... .......++++|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g~l~v~~~-~~~~~~d~~-~g~~~~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS-GGIAVVDPD-TGKVTVLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTSEEEEEET-TCEEEEETT-TTEEEEEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCCEEEEEEc-CceEEEecC-CCcEEEEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5667777 6654444444 444555887 44444332211 012 34667899999999 766665543 5
Q ss_pred eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCceee---ee
Q 010933 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVA---TF 361 (497)
Q Consensus 287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~~---~~ 361 (497)
.|..++.. ++.. ..... -...+.++|+|+++.|+.++ . +.|..|++...+..+. .+
T Consensus 116 ~v~~~~~~-~~~~----~~~~~--------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVADG--------------LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp EEEEEETT-SEEE----EEEEE--------------ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred ceEEECCC-CeEE----EEecC--------------cccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence 57777776 3321 22222 13468999999999887764 3 8899999864333121 12
Q ss_pred eecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933 362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~ 433 (497)
........ ..-.+++..+|++.++.-..+.|.+++.+ ++. ...+......+.+++|..
T Consensus 177 ~~~~~~~g------------~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~-~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 177 IDFPGGPG------------YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL-LREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EE-SSSSC------------EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE-EEEEE-SSSSEEEEEEES
T ss_pred EEcCCCCc------------CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE-EEEEcCCCCCEEEEEEEC
Confidence 11111000 01479999999988888889999999977 543 355554444677777753
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=8.3e-06 Score=79.74 Aligned_cols=242 Identities=14% Similarity=0.173 Sum_probs=141.6
Q ss_pred cchhhhhcCCCCCCCcccCCc-ceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccc
Q 010933 13 EWKCSQAFGERNPDEELQDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKT 91 (497)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~-~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (497)
.|+--+.|....-.++-.-.+ .|+| |++.+..+|.|+.+|.|.+.+-.- ..+.
T Consensus 5 qWrrF~lFq~~~i~~~~~~~G~~isc--~~s~~~~vvigt~~G~V~~Ln~s~------------------------~~~~ 58 (933)
T KOG2114|consen 5 QWRRFSLFQWKEIPSLENFVGNAISC--CSSSTGSVVIGTADGRVVILNSSF------------------------QLIR 58 (933)
T ss_pred hcceeeeeeeeecCCcccCCCCceeE--EcCCCceEEEeeccccEEEecccc------------------------eeee
Confidence 455445554433321111123 5655 458888999999999998887532 3456
Q ss_pred cccccCcccccccccccccc-eeEEEEEecCCCCEEEEEeCCc-----cEEEeecCchheeccccCCCCCcccccccccc
Q 010933 92 EFQSHEPEFDYLKSLEIEEK-INRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 165 (497)
Q Consensus 92 ~~~~h~~~~~~~~~~~~~~~-i~~l~~~~s~~~~~l~s~s~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (497)
.+++++ .. |..+.. ..+..+|++.+.|+ .+++|+++.-+.... +.
T Consensus 59 ~fqa~~------------~siv~~L~~--~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s------P~--------- 109 (933)
T KOG2114|consen 59 GFQAYE------------QSIVQFLYI--LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS------PQ--------- 109 (933)
T ss_pred hheecc------------hhhhhHhhc--ccCceEEEEEeecCCCCceEEEEecccccCCCCC------cc---------
Confidence 788887 44 333332 12234777777664 588999875431000 00
Q ss_pred ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCcc
Q 010933 166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 244 (497)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~ 244 (497)
. -+..+++... +.....++.+++++.+-+.+|+| .+|.|..+.-+.
T Consensus 110 ---c-------------------~~~~ri~~~~-----------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 110 ---C-------------------LYEHRIFTIK-----------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred ---e-------------------eeeeeeeccC-----------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence 0 0001111111 12346678899999999999999 999999985331
Q ss_pred Cc-eeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCcccccccc
Q 010933 245 SD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 323 (497)
Q Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (497)
.. +..+. .-......+|+.+++..++ ..++.+.....|.+|.+...... .+... .|.
T Consensus 157 ~RDrgsr~-----~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~y~l~gr~p~---~~~ld-------------~~G 214 (933)
T KOG2114|consen 157 LRDRGSRQ-----DYSHRGKEPITGLALRSDG-KSVLFVATTEQVMLYSLSGRTPS---LKVLD-------------NNG 214 (933)
T ss_pred hhccccce-----eeeccCCCCceeeEEecCC-ceeEEEEecceeEEEEecCCCcc---eeeec-------------cCC
Confidence 11 11111 0123456899999999998 54344444557999998743211 12222 244
Q ss_pred ccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeee-ecc
Q 010933 324 ASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFK-IHE 365 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~-~~~ 365 (497)
..++|.++++....++++...-+.+|+... .++-..+. ++.
T Consensus 215 ~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~~g~k 256 (933)
T KOG2114|consen 215 ISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFEVGEK 256 (933)
T ss_pred ccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeecCCCe
Confidence 678999998765557777778899999874 44444444 444
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.67 E-value=3.4e-06 Score=71.06 Aligned_cols=168 Identities=13% Similarity=0.067 Sum_probs=109.5
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
++++++ +++++++++.+....|..|.++.......
T Consensus 161 ~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~------------------------------------------- 195 (344)
T KOG4532|consen 161 QNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIE------------------------------------------- 195 (344)
T ss_pred eeeeEE--cCCCceEEEecCCCcceEEEeCCccceee-------------------------------------------
Confidence 677888 78999999999999999998875432111
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 270 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (497)
+++.....+.-.+.+|+.....+|++ .||++.|||++..+.+.... ..+-+.|.+.++.+.
T Consensus 196 ---------------~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~---sstrp~hnGa~R~c~ 257 (344)
T KOG4532|consen 196 ---------------NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI---SSTRPHHNGAFRVCR 257 (344)
T ss_pred ---------------eeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh---cccCCCCCCceEEEE
Confidence 11112333444678899999999999 99999999999554443321 123456999999999
Q ss_pred EeCCCC-cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccc-cccEEEEeeCCCEEEEEecCeEEE
Q 010933 271 FHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA-SISDIKFANDGQHLLSRDYMNLKL 348 (497)
Q Consensus 271 ~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~~~i~l 348 (497)
|++.|. .+|+..-.-+.+.+.|+|+++.... +...+. .+..|.. .|....|+.++.-+.+.+.-.+.=
T Consensus 258 Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d---------~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae 327 (344)
T KOG4532|consen 258 FSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDD---------VERKHNTQHIFGTNFNNENESNDVKNELQGAE 327 (344)
T ss_pred ecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCcc---------ccccccccccccccccCCCcccccccchhhhe
Confidence 998763 2455555568999999999865421 011111 0122222 377777877776666554444444
Q ss_pred EecC
Q 010933 349 WDIR 352 (497)
Q Consensus 349 wd~~ 352 (497)
|++.
T Consensus 328 ~ni~ 331 (344)
T KOG4532|consen 328 YNIL 331 (344)
T ss_pred eecc
Confidence 5543
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=81.70 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=108.9
Q ss_pred CCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010933 226 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 305 (497)
Q Consensus 226 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 305 (497)
|-.+.+|.+..|-+-|++ ++.... +. .++.|.++.|...+ +++..|..+|.|..+|+|.+..- ..
T Consensus 225 gyhfs~G~sqqv~L~nve-tg~~qs--------f~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~ 289 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVE-TGHQQS--------FQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG 289 (425)
T ss_pred eeeecccccceeEEEEee-cccccc--------cc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence 444455677788888888 332211 22 56788999999888 89999999999999999976221 11
Q ss_pred ecccccccCCccccccccccccEEEEee-CCCEEEEEec-CeEEEEecCCCCce---eeeeeecccccccccccCCCCCc
Q 010933 306 LRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSI 380 (497)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 380 (497)
+.. ..--|...|+++..-. ++++|++.+. |.|++||++. -++ +.++.+|...-.-
T Consensus 290 ~~a---------~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~---------- 349 (425)
T KOG2695|consen 290 WCA---------QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY---------- 349 (425)
T ss_pred cce---------EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc----------
Confidence 111 0112457788887765 6777777654 9999999986 666 8889999764321
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 381 FDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 381 ~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
.-+...+....++++++|-..+||.++.+..
T Consensus 350 ---l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 350 ---LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred ---cccccccccceEEEccCeeEEEEEecccCce
Confidence 2467778888999999999999999998843
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=1.1e-07 Score=82.51 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=93.3
Q ss_pred CCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccC----ceeeEEeecCCCccCCCCCCeEEEEEeC-CCCcEEEEEeCCC
Q 010933 213 HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS----DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRG 286 (497)
Q Consensus 213 h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg 286 (497)
..+.|.++.|...++++..| .+|.|..+|++.. +.+.+ ..-|...|+++..-. ++ .+|++.+.+|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--------rlyh~Ssvtslq~Lq~s~-q~LmaS~M~g 321 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--------RLYHDSSVTSLQILQFSQ-QKLMASDMTG 321 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE--------EEEcCcchhhhhhhcccc-ceEeeccCcC
Confidence 45678889999888899999 9999999999843 12222 234888999988766 55 7899999999
Q ss_pred eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-EecCeEEEEecCCCCceeeeeeecc
Q 010933 287 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDYMNLKLWDIRMDSTPVATFKIHE 365 (497)
Q Consensus 287 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~lwd~~~~~~~~~~~~~~~ 365 (497)
+|++||+|.-+. .+.++.+++|.+.. .-.-+...+....+++ |+|...|||.++. +.++.+++-..
T Consensus 322 kikLyD~R~~K~-~~~V~qYeGHvN~~-----------a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~ 388 (425)
T KOG2695|consen 322 KIKLYDLRATKC-KKSVMQYEGHVNLS-----------AYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY 388 (425)
T ss_pred ceeEeeehhhhc-ccceeeeecccccc-----------cccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence 999999997553 22336666654321 1122333454445555 5669999999996 88888876554
Q ss_pred c
Q 010933 366 H 366 (497)
Q Consensus 366 ~ 366 (497)
.
T Consensus 389 s 389 (425)
T KOG2695|consen 389 S 389 (425)
T ss_pred c
Confidence 4
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.64 E-value=6.8e-07 Score=79.48 Aligned_cols=158 Identities=9% Similarity=0.097 Sum_probs=98.8
Q ss_pred eeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CCeEEEEE
Q 010933 217 INSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRLVD 292 (497)
Q Consensus 217 v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~v~d 292 (497)
...+..++.+++++.+ .+....+++.....+..+.++.. .+. ..-+++.+..+. .....+.. ...+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~---~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVP---KRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecc---cCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 4455678889999998 77777777766333312221100 011 222344444443 33333333 34444554
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceeee-eeeccccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVAT-FKIHEHLRPK 370 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~~-~~~~~~~~~~ 370 (497)
...+.. .. .-+|..-+..++++||+++|++++ |..||+-.... --.+.. .-||...|
T Consensus 139 ~~~~~~-----~~-------------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFV-- 197 (390)
T KOG3914|consen 139 ADSGRC-----EP-------------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFV-- 197 (390)
T ss_pred ccccCc-----ch-------------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhe--
Confidence 443221 11 234667899999999999999996 59999877764 333444 35688876
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
..++.-++ ..|++||.|++|++||+.+++.+
T Consensus 198 -------------S~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 198 -------------STISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -------------eeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 46666654 56899999999999999999765
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.61 E-value=5.8e-08 Score=58.34 Aligned_cols=31 Identities=19% Similarity=0.551 Sum_probs=29.9
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd 60 (497)
+|.+.|++|+|+|++++||+|+.|+.|++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4999999999999999999999999999997
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=6.7e-08 Score=93.95 Aligned_cols=216 Identities=14% Similarity=0.235 Sum_probs=142.7
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
|+..-+|++|+-+.++|+.|+..|.|+++++.+|.. .....+|. .
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------------e~s~ncH~------------S 1144 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------------EESVNCHQ------------S 1144 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------------cccccccc------------c
Confidence 678899999999999999999999999999998854 45667888 8
Q ss_pred ceeEEEEEecCCCCEEEEEeC--CccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 111 KINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
+|+-+.= +.+|..+++.+. .--..+|++...-
T Consensus 1145 avT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~~-------------------------------------------- 1178 (1516)
T KOG1832|consen 1145 AVTLVEP--SVDGSTQLTSSSSSSPLSALWDASSTG-------------------------------------------- 1178 (1516)
T ss_pred ccccccc--cCCcceeeeeccccCchHHHhcccccc--------------------------------------------
Confidence 8888875 678888777643 2356778775411
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 267 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (497)
.+...| ..-.++.|+.....-+.| ......+||+++...+...+. ...+.+-.-.
T Consensus 1179 ---------------~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt----~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1179 ---------------GPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT----DTVTSSYSNN 1234 (1516)
T ss_pred ---------------Cccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC----cchhhhhhcc
Confidence 111111 123356776654444555 567789999995554433210 0111222226
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEE
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLK 347 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 347 (497)
.+.|+|+. .+++ .|| .+||+|..+.+ +.|..- .---.-.|+|+|.-++..+.
T Consensus 1235 ~a~FsP~D-~LIl---ndG--vLWDvR~~~aI----h~FD~f--------------t~~~~G~FHP~g~eVIINSE---- 1286 (1516)
T KOG1832|consen 1235 LAHFSPCD-TLIL---NDG--VLWDVRIPEAI----HRFDQF--------------TDYGGGGFHPSGNEVIINSE---- 1286 (1516)
T ss_pred ccccCCCc-ceEe---eCc--eeeeeccHHHH----hhhhhh--------------eecccccccCCCceEEeech----
Confidence 77899997 6655 466 58999987554 444430 11123358999988887654
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEE
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 397 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 397 (497)
|||+++ .+.+.....-.. +.+.|...|..++.
T Consensus 1287 IwD~RT-F~lLh~VP~Ldq-----------------c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1287 IWDMRT-FKLLHSVPSLDQ-----------------CAVTFNSTGDVMYA 1318 (1516)
T ss_pred hhhhHH-HHHHhcCccccc-----------------eEEEeccCccchhh
Confidence 899997 777766654443 46888888876553
No 306
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.55 E-value=0.00017 Score=67.84 Aligned_cols=318 Identities=11% Similarity=0.088 Sum_probs=156.2
Q ss_pred cCCCCEEEEee---------cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 41 DKTGDYLAVGD---------RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 41 sp~g~~lasg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
||||++++... ..+.+.|+|+++++. ..+.... ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~------------------------~~l~~~~------------~~ 44 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI------------------------TPLTPPP------------PK 44 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE------------------------EESS-EE------------TT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce------------------------EECcCCc------------cc
Confidence 68999888742 346789999988653 1111112 56
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
+....| +|+|+.++.... +.|.+++..++....+.... ...
T Consensus 45 ~~~~~~--sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg-~~~----------------------------------- 85 (353)
T PF00930_consen 45 LQDAKW--SPDGKYIAFVRD-NNLYLRDLATGQETQLTTDG-EPG----------------------------------- 85 (353)
T ss_dssp BSEEEE---SSSTEEEEEET-TEEEEESSTTSEEEESES---TTT-----------------------------------
T ss_pred ccccee--ecCCCeeEEEec-CceEEEECCCCCeEEecccc-cee-----------------------------------
Confidence 888999 688989888864 67999988776544432211 000
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCC--CCCeE
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDL--TEVIT 267 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~i~ 267 (497)
+.+.. +--.+-+.--..-..+-||||++.|+.. ++..|..+.+.... ..+ --.+.
T Consensus 86 --i~nG~------~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~-------------~~~~~yp~~~ 144 (353)
T PF00930_consen 86 --IYNGV------PDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYS-------------PPDSQYPEVE 144 (353)
T ss_dssp --EEESB--------HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEES-------------SSTESS-EEE
T ss_pred --EEcCc------cceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccC-------------CccccCCccc
Confidence 00000 0000000001122458899999999986 66666665543100 000 01233
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-Ee--c-
Q 010933 268 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RD--Y- 343 (497)
Q Consensus 268 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~--~- 343 (497)
.+.+-.-| ..... -.+.++|+.+++... +..... +..-...+..+.|.++++.|+. -. +
T Consensus 145 ~~~YPk~G-~~np~----v~l~v~~~~~~~~~~--~~~~~~----------~~~~~~yl~~v~W~~d~~~l~~~~~nR~q 207 (353)
T PF00930_consen 145 SIRYPKAG-DPNPR----VSLFVVDLASGKTTE--LDPPNS----------LNPQDYYLTRVGWSPDGKRLWVQWLNRDQ 207 (353)
T ss_dssp EEE--BTT-S---E----EEEEEEESSSTCCCE--E---HH----------HHTSSEEEEEEEEEETTEEEEEEEEETTS
T ss_pred ccccCCCC-CcCCc----eEEEEEECCCCcEEE--eeeccc----------cCCCccCcccceecCCCcEEEEEEcccCC
Confidence 44443333 11111 156778888775421 011100 0011356899999999984443 22 1
Q ss_pred --CeEEEEecCCCCceeeee-eecccccccccccCCCCCccceeEEEEc-CCCC-EEEEEeCCCcEEEEEcCCCCcceEE
Q 010933 344 --MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGL-HFATGSYSNLLRIFSHGVGSAGGIT 418 (497)
Q Consensus 344 --~~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~ 418 (497)
..+.+.|..+ +.....+ ......+.. . ....|. +++. +|.....||.-+||-++........
T Consensus 208 ~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~~----------~--~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~ 274 (353)
T PF00930_consen 208 NRLDLVLCDAST-GETRVVLEETSDGWVDV----------Y--DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ 274 (353)
T ss_dssp TEEEEEEEEECT-TTCEEEEEEESSSSSSS----------S--SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE
T ss_pred CEEEEEEEECCC-CceeEEEEecCCcceee----------e--cccccccCCCCEEEEEEEcCCCcEEEEEcccccceec
Confidence 4566777765 4332222 222333211 1 246654 5554 5555557787666655544343455
Q ss_pred EeccCcceeeeEeecCCCcccccccceeEeeccC--c-eec--CC--CCCcccccccCCCeEEEEEecCCCEEEEEeC
Q 010933 419 VEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQ--A-HEN--SS--SGHHELSYNLSSKLLHLAWHPTTNLIACANG 489 (497)
Q Consensus 419 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~--~-~iw--~~--~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~ 489 (497)
+....-.|..+.........+ ..++..+. . ++| .. ++....+......-..++|||++++++..+.
T Consensus 275 lT~G~~~V~~i~~~d~~~~~i-----yf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRI-----YFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEE-----EEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred cccCceeecccceEcCCCCEE-----EEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 655666675644333223322 34444332 3 777 22 2223333333333368999999999886653
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=8.3e-08 Score=93.32 Aligned_cols=204 Identities=13% Similarity=0.167 Sum_probs=143.7
Q ss_pred cccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccccccc
Q 010933 86 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 165 (497)
Q Consensus 86 ~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (497)
.|+..++|+.|+ ..-++++| +.+..+|+.|+..|.|+++++.+|.....
T Consensus 1090 RFr~w~~frd~~------------~~fTc~af--s~~~~hL~vG~~~Geik~~nv~sG~~e~s----------------- 1138 (1516)
T KOG1832|consen 1090 RFRSWRSFRDET------------ALFTCIAF--SGGTNHLAVGSHAGEIKIFNVSSGSMEES----------------- 1138 (1516)
T ss_pred hcccchhhhccc------------cceeeEEe--ecCCceEEeeeccceEEEEEccCcccccc-----------------
Confidence 345566677777 88999999 57788999999999999999998874321
Q ss_pred ccCccccCCCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--c-CCeEEEEeC
Q 010933 166 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--D-DLRINLWNL 242 (497)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~-d~~i~iwd~ 242 (497)
..+|.++|+-+.-+.+|..+++. . .-...+|++
T Consensus 1139 --------------------------------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1139 --------------------------------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred --------------------------------------------ccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 16899999999999999988774 3 336789998
Q ss_pred ccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccc
Q 010933 243 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 322 (497)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (497)
.......+. + ..-.++.|+... ..-+.|.......+||+.++..+.+ .+.. .. +.
T Consensus 1175 ~s~~~~~Hs-------f----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~t---ylt~-~~---------~~ 1229 (1516)
T KOG1832|consen 1175 SSTGGPRHS-------F----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQT---YLTD-TV---------TS 1229 (1516)
T ss_pred ccccCcccc-------c----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHH---hcCc-ch---------hh
Confidence 855544332 1 223577888765 5556666667899999999876642 1222 00 00
Q ss_pred cccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 323 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 323 ~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
...-+++.|+|+..+++- || .+||++. ...+..|...... ..=.|+|.|..++.-++
T Consensus 1230 ~y~~n~a~FsP~D~LIln--dG--vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-- 1286 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLILN--DG--VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-- 1286 (1516)
T ss_pred hhhccccccCCCcceEee--Cc--eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech--
Confidence 123378899999887764 22 4899986 4556665544321 24679999999998887
Q ss_pred cEEEEEcCCCCcc
Q 010933 403 LLRIFSHGVGSAG 415 (497)
Q Consensus 403 ~i~vw~~~~~~~~ 415 (497)
|||+++.+.+
T Consensus 1287 ---IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1287 ---IWDMRTFKLL 1296 (1516)
T ss_pred ---hhhhHHHHHH
Confidence 9999987544
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=1.2e-05 Score=78.37 Aligned_cols=108 Identities=15% Similarity=0.325 Sum_probs=79.1
Q ss_pred EEEEEcCCCCEEEEee----cCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 36 SAIEFDKTGDYLAVGD----RGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 36 ~~i~~sp~g~~lasg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
+-..|+|...++|+++ ..|+|-||-- +|+. ..--+.+ -.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEP---------------------qr~Vt~P---------------~h 61 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEP---------------------QRDVTYP---------------VH 61 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CCCC---------------------Ccccccc---------------ee
Confidence 4467999999999887 4588999853 3321 0011122 22
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 191 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (497)
+++++|+ |..-.|+.+-.-|.+.+|...+.+...+
T Consensus 62 atSLCWH--pe~~vLa~gwe~g~~~v~~~~~~e~htv------------------------------------------- 96 (1416)
T KOG3617|consen 62 ATSLCWH--PEEFVLAQGWEMGVSDVQKTNTTETHTV------------------------------------------- 96 (1416)
T ss_pred hhhhccC--hHHHHHhhccccceeEEEecCCceeeee-------------------------------------------
Confidence 5779995 5655677777889999998876553221
Q ss_pred eEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc
Q 010933 192 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 243 (497)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~ 243 (497)
...|+.+|..+.|+++|..++++ .-|.+.+|...
T Consensus 97 ------------------~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 ------------------VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ------------------ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 15789999999999999999999 99999999876
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=9.4e-06 Score=78.80 Aligned_cols=192 Identities=16% Similarity=0.164 Sum_probs=127.1
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+...+.++|++++ +++||-|+.+|.|++.+.+.. . .+...|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~------------------------~-~~~~~~s----------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGN------------------------P-KTNFDHS----------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCc------------------------c-ccccccc-----------
Confidence 3456889999988 579999999999999997653 1 2223343
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.. +.+|.++++||.||.|.|-.+.+.+....
T Consensus 78 -~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~---------------------------------------- 108 (846)
T KOG2066|consen 78 -SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQ---------------------------------------- 108 (846)
T ss_pred -cc--------ccCCceEEEecCCCcEEEeeccCCcccee----------------------------------------
Confidence 11 46799999999999999988776552221
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCC-----CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-----CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 262 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (497)
..-..++.+++++|+ .+.+++| .-| +.++.-+--+....+ .+..-
T Consensus 109 ----------------------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v------~l~~~ 159 (846)
T KOG2066|consen 109 ----------------------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV------VLSEG 159 (846)
T ss_pred ----------------------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce------eeecC
Confidence 122457888999987 5577777 666 877764422222221 14556
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
.++|+++.|. | +++|-++.+| |++||+.+++.+. .++. +...... ..--..+.|.++. .|+.|-
T Consensus 160 eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~----~i~~-p~~~~R~------e~fpphl~W~~~~-~LVIGW 223 (846)
T KOG2066|consen 160 EGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLT----NIPP-PSQSVRP------ELFPPHLHWQDED-RLVIGW 223 (846)
T ss_pred ccceEEEEec--C-cEEEEecCCC-cEEEeccccceee----ccCC-CCCCCCc------ccCCCceEecCCC-eEEEec
Confidence 7999999997 4 7899998888 8999999876542 2211 0000000 1223467787655 555664
Q ss_pred cCeEEEEecC
Q 010933 343 YMNLKLWDIR 352 (497)
Q Consensus 343 ~~~i~lwd~~ 352 (497)
..+|+|..++
T Consensus 224 ~d~v~i~~I~ 233 (846)
T KOG2066|consen 224 GDSVKICSIK 233 (846)
T ss_pred CCeEEEEEEe
Confidence 4678888876
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=4e-07 Score=54.62 Aligned_cols=38 Identities=29% Similarity=0.799 Sum_probs=34.0
Q ss_pred cccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEee
Q 010933 88 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWK 139 (497)
Q Consensus 88 ~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~ 139 (497)
+++.++++|+ +.|++|+| +|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~------------~~i~~i~~--~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS------------SSINSIAW--SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS------------SSEEEEEE--ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC------------CcEEEEEE--ecccccceeeCCCCEEEEEC
Confidence 3467889999 99999999 57789999999999999997
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.46 E-value=7.6e-05 Score=66.16 Aligned_cols=157 Identities=15% Similarity=0.062 Sum_probs=82.4
Q ss_pred CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010933 226 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 304 (497)
Q Consensus 226 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 304 (497)
+..++.+ .++.++.+|..++....+..... .+... ..........+ ..++++..++.|..+|+++|+.+.+
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~--- 147 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWK--- 147 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEE---
T ss_pred ccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEEE---
Confidence 3345554 78899999988555544421111 01111 11122222225 7788888899999999999976422
Q ss_pred eecccccccCCccccccccccccEEEEeeCCCEEEEEecCe-EEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933 305 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN-LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 383 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (497)
... ...... ..+. ....+..-....++..+++..++. +.+ |+.+ ++.+.... ....
T Consensus 148 -~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~---------------- 204 (238)
T PF13360_consen 148 -YPV-GEPRGS-SPIS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI---------------- 204 (238)
T ss_dssp -EES-STT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E----------------
T ss_pred -eec-CCCCCC-ccee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc----------------
Confidence 111 000000 0000 001112222223453444444564 555 9987 66444332 1111
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEcCCCCc
Q 010933 384 FECSVSGDGLHFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 384 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~ 414 (497)
......++..|+.++.++.|..||+.+++.
T Consensus 205 -~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 205 -YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred -cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 122456788888888999999999999844
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.6e-06 Score=74.82 Aligned_cols=221 Identities=21% Similarity=0.187 Sum_probs=138.4
Q ss_pred cccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 104 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 104 ~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
++..|.+.|+.+.- .-..++.+++.||.++.|.-..-....
T Consensus 4 ksymhrd~i~hv~~---tka~fiiqASlDGh~KFWkKs~isGvE------------------------------------ 44 (558)
T KOG0882|consen 4 KSYMHRDVITHVFP---TKAKFIIQASLDGHKKFWKKSRISGVE------------------------------------ 44 (558)
T ss_pred hhhcccceeeeEee---ehhheEEeeecchhhhhcCCCCcccee------------------------------------
Confidence 34445577877765 345699999999999999754322111
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c-CCeEEEEeCccCceeeEEeecCCCccCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
.++- +..|...|.+++.+.+|.++.+. . |..++++|++ .-.....+. +..
T Consensus 45 ---------------------fVKh-FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE-n~DminmiK-----L~~ 96 (558)
T KOG0882|consen 45 ---------------------FVKH-FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE-NFDMINMIK-----LVD 96 (558)
T ss_pred ---------------------ehhh-hHHHHHHHHhhhccccceeEeeccCcccceeEEEee-ccchhhhcc-----ccc
Confidence 1111 26888889999999999999996 5 9999999998 333332211 111
Q ss_pred CCCCeEEEEEe--CCCC-cEEEEEe-CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933 262 LTEVITSAEFH--PIYC-NLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 337 (497)
Q Consensus 262 ~~~~i~~~~~~--~~~~-~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 337 (497)
.. ..+.|. +... ..++++. .++.+.++|-+...... ..+. .-|..+|..+.+++-+..
T Consensus 97 lP---g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~---~~fk------------klH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 97 LP---GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD---GYFK------------KLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred CC---CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc---ceec------------ccccCceEEEEeeccccc
Confidence 11 122232 2210 1344443 47899999977543211 1111 235688999999999998
Q ss_pred EEEEec-CeEEEEecCC-----CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 338 LLSRDY-MNLKLWDIRM-----DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 338 l~~~~~-~~i~lwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
+++.+. |-|.-|.... ..+....++...... ...+.... ..++.|+|++..+.+-+.|..|+++++.+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy----~f~K~Kt~--pts~Efsp~g~qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY----GFPKAKTE--PTSFEFSPDGAQISTLNPDRKVRGFVFKT 232 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhh----cccccccC--ccceEEccccCcccccCcccEEEEEEecc
Confidence 888765 9999999862 111222222211110 00000011 15899999999999999999999999999
Q ss_pred CCcc
Q 010933 412 GSAG 415 (497)
Q Consensus 412 ~~~~ 415 (497)
++.+
T Consensus 233 Gklv 236 (558)
T KOG0882|consen 233 GKLV 236 (558)
T ss_pred chhh
Confidence 8543
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.44 E-value=4.4e-05 Score=67.53 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=73.7
Q ss_pred CCCCCeeEEEeCCCCCEEEEE-cCC-------eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE-E
Q 010933 212 AHDFNINSISNNSDCETFVSA-DDL-------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY-S 282 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~-~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~ 282 (497)
-|...|..+++.++|..++.. ..+ .+-+++.. ..+..+..++.........+-+|++++++ .++++ +
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~ts 235 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTS 235 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEEC
Confidence 467789999999999887775 433 23444433 33444433333345567889999999998 66654 4
Q ss_pred eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEe
Q 010933 283 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 350 (497)
Q Consensus 283 ~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd 350 (497)
=..+.+.+||..+++.+ ..... ..+..++-.+++ ++++...|.+...+
T Consensus 236 PrGg~~~~~d~~tg~~~----~~~~l---------------~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLL----GSVPL---------------PDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred CCCCEEEEEECCCCCEe----ecccc---------------CceeeeeecCCc-eEEeCCCccEEEcc
Confidence 45789999999998765 22222 336667766666 66655446544333
No 314
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=0.00024 Score=72.60 Aligned_cols=241 Identities=15% Similarity=0.111 Sum_probs=133.6
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccce
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 112 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i 112 (497)
+.|.++.|.-+++-++.+..+|.|.+-|.++... ++.|.- +.+|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------eivg~v-----------d~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------EIVGNV-----------DNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------------eeeeec-----------cCce
Confidence 6899999999999999999999999998877532 222222 2889
Q ss_pred eEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCcce
Q 010933 113 NRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 192 (497)
Q Consensus 113 ~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (497)
.+++| +||.+.++..+.++++.+-.- +...+..... ..+ ....+.++..-+....+.+.... +..
T Consensus 113 ~aasw--S~Dee~l~liT~~~tll~mT~-~f~~i~E~~L--~~d------~~~~sk~v~VGwGrkeTqfrgs~----gr~ 177 (1265)
T KOG1920|consen 113 SAASW--SPDEELLALITGRQTLLFMTK-DFEPIAEKPL--DAD------DERKSKFVNVGWGRKETQFRGSE----GRQ 177 (1265)
T ss_pred EEEee--cCCCcEEEEEeCCcEEEEEec-cccchhcccc--ccc------cccccccceecccccceeeecch----hhh
Confidence 99999 789999999998888776432 1111110000 000 00001111111111111110000 000
Q ss_pred EEEeecCCccceeeeee-ccCCCCCeeEEEeCCCCCEEEE-----EcC-CeEEEEeCccCceeeEEeecCCCccCCCCCC
Q 010933 193 KIANVGNSVHARCQKVY-PHAHDFNINSISNNSDCETFVS-----ADD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEV 265 (497)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~-----~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (497)
...+.. ...+.. .....+.=.+++|-.||+++++ ..+ +.|++||.+ +..-.+ -.....-
T Consensus 178 ~~~~~~-----~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--g~Lns~-------se~~~~l 243 (1265)
T KOG1920|consen 178 AARQKI-----EKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE--GALNST-------SEPVEGL 243 (1265)
T ss_pred cccccc-----cccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc--chhhcc-------cCccccc
Confidence 000000 000000 0011222346899999999987 234 899999987 322211 1222333
Q ss_pred eEEEEEeCCCCcEEEEEe---CCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933 266 ITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 341 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 341 (497)
=.+++|-|.| .++++-. .|+.|.+|.-+.-+.- ...-.+. .....+..++|+.++..||.-
T Consensus 244 ~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg-~f~l~~p-------------~de~~ve~L~Wns~sdiLAv~~ 308 (1265)
T KOG1920|consen 244 QHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHG-EFVLPFP-------------LDEKEVEELAWNSNSDILAVVT 308 (1265)
T ss_pred ccceeecCCC-CeEeeeeecCCCCcEEEEecCCcccc-ccccCCc-------------ccccchheeeecCCCCceeeee
Confidence 4688999999 8888763 3667888875432110 0001111 112348999999999999883
Q ss_pred --ec-CeEEEEecCC
Q 010933 342 --DY-MNLKLWDIRM 353 (497)
Q Consensus 342 --~~-~~i~lwd~~~ 353 (497)
.. ..|++|-+.+
T Consensus 309 ~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 309 SNLENSLVQLWTTGN 323 (1265)
T ss_pred cccccceEEEEEecC
Confidence 23 4599998864
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.32 E-value=2.2e-07 Score=87.39 Aligned_cols=208 Identities=15% Similarity=0.166 Sum_probs=135.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..+.++++....+...++.|..+|.|-+-.+....-..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs------------------------------------------ 94 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS------------------------------------------ 94 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccccc------------------------------------------
Confidence 56778887544444567778888999887765433110
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCC-CCCEEEEE-c----CCeEEEEeCccCc-eeeEEeecCCCccCC-
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-D----DLRINLWNLEISD-QCFNIVDMKPSNMDD- 261 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~----d~~i~iwd~~~~~-~~~~~~~~~~~~~~~- 261 (497)
..+..++..+.++++|++ |.+.||+| + |..+.|||+.+.- .+.... .+.+
T Consensus 95 -----------------~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~-----~fs~~ 152 (783)
T KOG1008|consen 95 -----------------AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP-----LFSSS 152 (783)
T ss_pred -----------------ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccc-----ccccc
Confidence 001257788999999988 67788887 3 6789999998321 111111 1211
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee-CCCEEEE
Q 010933 262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLS 340 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~ 340 (497)
......+++|..+. +++.+|...+.+.++|+|...... ..+. +..+..+.++| .+.|+++
T Consensus 153 ~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~---~svn---------------Tk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 153 TLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSV---SSVN---------------TKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccCccccccccCc-chhhcccccchhhhhhhhhhhhhh---hhhh---------------hhhcccceecCCCCCceec
Confidence 33445588999887 889999999999999999532210 1111 13577788899 7889998
Q ss_pred EecCeEEEEe-cCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEEeC-CCcEEEEEcCC
Q 010933 341 RDYMNLKLWD-IRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSY-SNLLRIFSHGV 411 (497)
Q Consensus 341 ~~~~~i~lwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~~~-dg~i~vw~~~~ 411 (497)
-.++.|-+|| .+.-.+++..+...+...+ +.. ..++|.|... .|++.+. .+.|+++++..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~--------~~l---~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKP--------KQL---FALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcc--------cce---eeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8899999999 4433445555543333211 111 5899999542 4555554 57899999864
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.30 E-value=0.0014 Score=62.97 Aligned_cols=154 Identities=12% Similarity=0.012 Sum_probs=79.9
Q ss_pred CEEEEE-cCCeEEEEeCccCceeeEEeecCCC--ccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933 227 ETFVSA-DDLRINLWNLEISDQCFNIVDMKPS--NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 303 (497)
Q Consensus 227 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 303 (497)
..++.+ .++.++-+|.++++...+. ..... .......+ ... + ..++.++.+|.+..+|..+|+...+.
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~sP----~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~- 231 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTV-NLDVPSLTLRGESAP----ATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQ- 231 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeee-cCCCCcccccCCCCC----EEE--C-CEEEEEcCCCEEEEEEccCChhhhee-
Confidence 345556 8888999998855544332 10000 00011111 111 2 35677888999999999998754321
Q ss_pred ceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933 304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 383 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (497)
+. ..+.....+..-........+ .++..++++.++.+..+|+.+ ++.+........
T Consensus 232 ---~~--~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~----------------- 287 (394)
T PRK11138 232 ---RI--SQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV----------------- 287 (394)
T ss_pred ---cc--ccCCCccchhcccccCCCcEE-ECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc-----------------
Confidence 10 000000000000000011111 144444445569999999986 776655432111
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 384 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 384 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
..+.. ++..|+.++.+|.++.+|..+++.+
T Consensus 288 ~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 288 NDFAV--DGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred cCcEE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 12222 4567888889999999999888543
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=5.2e-05 Score=73.86 Aligned_cols=144 Identities=12% Similarity=-0.000 Sum_probs=97.6
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc
Q 010933 216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 294 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 294 (497)
.+++++++ ++.|+-| .+|.|++++.. ... .. ...|+.. .-+| .++++|+.||.|.|-.+-
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~--------~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KT--------NFDHSSS------ILEG-EYVASCSDDGKVVIGSLF 101 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecC-Ccc-cc--------ccccccc------ccCC-ceEEEecCCCcEEEeecc
Confidence 45555554 5688899 99999999987 332 22 2234333 5677 999999999999999888
Q ss_pred CCcccccccceecccccccCCccccccccccccEEEEeeC-----CCEEEEEec-CeEEEEecCCCCceeee-eeecccc
Q 010933 295 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDY-MNLKLWDIRMDSTPVAT-FKIHEHL 367 (497)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~-~~i~lwd~~~~~~~~~~-~~~~~~~ 367 (497)
+.+.+ ..+.- ..++.+++++|+ .+.+++|+. | +.++.-+--+..... +...++.
T Consensus 102 ~~~~~----~~~df--------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 102 TDDEI----TQYDF--------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred CCccc----eeEec--------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 77655 33333 257999999998 467788777 6 888765432222222 2222332
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
|.++.|. |.+||-++.+| |+|||+.+++.+
T Consensus 163 ---------------I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l 192 (846)
T KOG2066|consen 163 ---------------IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRL 192 (846)
T ss_pred ---------------eEEEEec--CcEEEEecCCC-cEEEecccccee
Confidence 2688884 67888887765 789999987554
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00041 Score=68.39 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=103.3
Q ss_pred CCCCC-eeEEEeCCCCCEEEE-E-cCC----eEEEEeCccC-----ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEE
Q 010933 212 AHDFN-INSISNNSDCETFVS-A-DDL----RINLWNLEIS-----DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 279 (497)
Q Consensus 212 ~h~~~-v~~~~~~~~~~~l~~-~-~d~----~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 279 (497)
.+... |..+-...+...|++ | +++ .+++|+++.. .+++....+-+...+....++.+++++.+- +.+
T Consensus 62 a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~I 140 (933)
T KOG2114|consen 62 AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTI 140 (933)
T ss_pred ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEE
Confidence 33333 333333334456665 4 444 7999998743 223311111111233346788899999987 899
Q ss_pred EEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE-EEEEecCeEEEEecCCCCce-
Q 010933 280 AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH-LLSRDYMNLKLWDIRMDSTP- 357 (497)
Q Consensus 280 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~i~lwd~~~~~~~- 357 (497)
|+|-.+|.|..+.-.--+... .+.--. .....+|+.+++..+++. +++++-..|.+|.+.. ..+
T Consensus 141 v~Gf~nG~V~~~~GDi~RDrg--sr~~~~-----------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~ 206 (933)
T KOG2114|consen 141 VCGFTNGLVICYKGDILRDRG--SRQDYS-----------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPS 206 (933)
T ss_pred EEEecCcEEEEEcCcchhccc--cceeee-----------ccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcc
Confidence 999999999987432111000 011101 112478999999988876 5555668999999974 333
Q ss_pred eeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe-ccCc
Q 010933 358 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKN 424 (497)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~-~~~~ 424 (497)
...+..|.... .+.++++....+++++. ..+.+|+.+.. .....+. +|+.
T Consensus 207 ~~~ld~~G~~l---------------nCss~~~~t~qfIca~~-e~l~fY~sd~~-~~cfaf~~g~kk 257 (933)
T KOG2114|consen 207 LKVLDNNGISL---------------NCSSFSDGTYQFICAGS-EFLYFYDSDGR-GPCFAFEVGEKK 257 (933)
T ss_pred eeeeccCCccc---------------eeeecCCCCccEEEecC-ceEEEEcCCCc-ceeeeecCCCeE
Confidence 33344444322 46777765443444433 47899997754 3334454 5544
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.0002 Score=64.20 Aligned_cols=78 Identities=8% Similarity=0.241 Sum_probs=60.2
Q ss_pred cCCcceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.|...|..++|||..+ ++..++.+..|+|.|+++.. ....+..|
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-----------------------~vssy~a~------------ 235 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-----------------------VVSSYIAY------------ 235 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccce-----------------------eeeheecc------------
Confidence 4678999999999776 78889999999999998753 24445555
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchh
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 144 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~ 144 (497)
..+++++|.. .+..++.+|-.+|.|.+||++..+
T Consensus 236 -~~~wSC~wDl-de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 236 -NQIWSCCWDL-DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred -CCceeeeecc-CCcceeEEeccCceEEEEEccCCC
Confidence 4599999952 334556666799999999998644
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=0.00011 Score=69.46 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=59.3
Q ss_pred cccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC
Q 010933 323 IASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 401 (497)
Q Consensus 323 ~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d 401 (497)
...+.+++++|+.+.++.| .||.|.+||... + +..+.... .++ +.++|+|+|..+++|+..
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~--~t~~~ka~-~~P--------------~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTR-G--VTLLAKAE-FIP--------------TLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCC-C--eeeeeeec-ccc--------------eEEEEcCCCcEEEEEcCC
Confidence 4689999999999888887 679999999875 2 22222111 111 579999999999999999
Q ss_pred CcEEEEEcCCCCcceEEE
Q 010933 402 NLLRIFSHGVGSAGGITV 419 (497)
Q Consensus 402 g~i~vw~~~~~~~~~~~~ 419 (497)
|.+.+||+.-.....+.+
T Consensus 321 GelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 321 GELQCFDMALSPIKMQLL 338 (545)
T ss_pred ceEEEEEeecCccceeec
Confidence 999999997664333333
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.15 E-value=4.9e-05 Score=75.00 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=96.5
Q ss_pred CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---------CCeEEEEEc
Q 010933 224 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDM 293 (497)
Q Consensus 224 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~v~d~ 293 (497)
.+++.+.+| ..|+|.+-|.+ .-+.++. +..|++.|..+.. .| ++|++++. |.-|+|||+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~-s~~~iht-------~~aHs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPN-SFETIHT-------FDAHSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ecCcEEEeecccceEEeecCC-cCceeee-------eeccccceeeeec--cC-CeEEEeecccccccccccchhhhhhh
Confidence 457889999 99999999998 5555554 7889999887655 46 78888875 556899999
Q ss_pred cCCcccccccceecccccccCCccccccccccccEEEEeeCC--CEEEEEecCeEEEEecCCCCce-eeeeeeccccccc
Q 010933 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--QHLLSRDYMNLKLWDIRMDSTP-VATFKIHEHLRPK 370 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~lwd~~~~~~~-~~~~~~~~~~~~~ 370 (497)
|..+.+ ..+..+ ..-.-+.|+|.- +.+++.+.|...+-|...-+.+ ...+..+...
T Consensus 254 Rmmral----~PI~~~--------------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~--- 312 (1118)
T KOG1275|consen 254 RMMRAL----SPIQFP--------------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG--- 312 (1118)
T ss_pred hhhhcc----CCcccc--------------cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC---
Confidence 986544 222210 112446677743 3333445599999884332333 2222222211
Q ss_pred ccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 010933 371 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 408 (497)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~ 408 (497)
. .+..+++|++++.||.|..+|.|.+|.
T Consensus 313 --------s--~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 313 --------S--GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred --------C--cceeEEecCCCceEEEecccCcEeeec
Confidence 0 025899999999999999999999998
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00022 Score=67.85 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=96.8
Q ss_pred CCCCCeeEEEeCCCCCEEEEE--c-C--CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933 212 AHDFNINSISNNSDCETFVSA--D-D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 286 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~--~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 286 (497)
.....+..-.|+|++..++.- . . ..++++++..+.. ..+. ++. ..-...+|+|+|..++++...||
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~-----~~~---g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-PVIL-----NFN---GNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-ceee-----ccC---CccCCccCCCCCCEEEEEECCCC
Confidence 334566778899999987763 2 2 3599999984443 3331 122 33345689999944445555566
Q ss_pred e--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCCceeeeee
Q 010933 287 F--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 287 ~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~~~~~~~ 362 (497)
. |.++|+..+... + +.. . .+.-..-.|+|||++++..+| |.-.||-...++.....+.
T Consensus 261 ~~~iy~~dl~~~~~~----~-Lt~-~------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 261 SPDIYLMDLDGKNLP----R-LTN-G------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred CccEEEEcCCCCcce----e-ccc-C------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 5 566677766522 2 211 0 122336689999999998765 5545554443355445554
Q ss_pred ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCc--EEEEEcCCCC
Q 010933 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNL--LRIFSHGVGS 413 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~--i~vw~~~~~~ 413 (497)
.....- ..-.|+|||++|+..+. +|. |.+.++.++.
T Consensus 323 ~~~~~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 323 FSGGGN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCCC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 333321 25789999999987664 344 6677776654
No 323
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.15 E-value=0.0018 Score=62.12 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=61.7
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCc
Q 010933 277 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDST 356 (497)
Q Consensus 277 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~ 356 (497)
..++.++.+|.+..+|..+|+.. |.. .. .....+.. .++..++...++.+..+|..+ ++
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~------W~~-~~------------~~~~~~~~-~~~~vy~~~~~g~l~ald~~t-G~ 315 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIV------WKR-EY------------GSVNDFAV-DGGRIYLVDQNDRVYALDTRG-GV 315 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEE------Eee-cC------------CCccCcEE-ECCEEEEEcCCCeEEEEECCC-Cc
Confidence 46777788999999999998744 222 00 11112222 234344444569999999986 66
Q ss_pred eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 357 PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
.+.......... . .+... .+.+|+.++.||.|++.|..+++.+
T Consensus 316 ~~W~~~~~~~~~------------~--~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 316 ELWSQSDLLHRL------------L--TAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEEcccccCCCc------------c--cCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 655432211110 0 12222 2457888999999999999998554
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.14 E-value=0.00032 Score=71.82 Aligned_cols=207 Identities=14% Similarity=0.107 Sum_probs=127.4
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.++.|. .+...++.+..+|.|.+-|..+......
T Consensus 69 ~~i~s~~fl--~d~~~i~v~~~~G~iilvd~et~~~eiv----------------------------------------- 105 (1265)
T KOG1920|consen 69 DEIVSVQFL--ADTNSICVITALGDIILVDPETLELEIV----------------------------------------- 105 (1265)
T ss_pred cceEEEEEe--cccceEEEEecCCcEEEEcccccceeee-----------------------------------------
Confidence 579999995 5667788888888898887776553321
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCc----cCcee----------eEEeec
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE----ISDQC----------FNIVDM 254 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~----~~~~~----------~~~~~~ 254 (497)
..-...|.+++|+||++.++.. ..+++.+-.-. ..... +.+=..
T Consensus 106 ---------------------g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwG 164 (1265)
T KOG1920|consen 106 ---------------------GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWG 164 (1265)
T ss_pred ---------------------eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceeccc
Confidence 2335678999999999999887 66666654321 01111 000000
Q ss_pred CC-CccC------------------C---CCCCeEEEEEeCCCCcEEEEEeC----C-CeEEEEEccCCcccccccceec
Q 010933 255 KP-SNMD------------------D---LTEVITSAEFHPIYCNLLAYSSS----R-GFVRLVDMRQSALCDHSARILR 307 (497)
Q Consensus 255 ~~-~~~~------------------~---~~~~i~~~~~~~~~~~~l~~~~~----d-g~i~v~d~~~~~~~~~~~~~~~ 307 (497)
+. ..+. + ..+.=+.+.|.-|| .++|+... + +.|++||-+ |.+-......
T Consensus 165 rkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~-- 240 (1265)
T KOG1920|consen 165 RKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV-- 240 (1265)
T ss_pred ccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhhcccCcc--
Confidence 00 0000 0 11222458999999 88888422 3 799999977 4432110010
Q ss_pred ccccccCCccccccccccccEEEEeeCCCEEEEE----ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933 308 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSR----DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 383 (497)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~----~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (497)
.+.-.+++|-|.|.++++- +++.|.+|.-+ |-....+......... . +
T Consensus 241 ---------------~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~hg~f~l~~p~de~--------~---v 292 (1265)
T KOG1920|consen 241 ---------------EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLRHGEFVLPFPLDEK--------E---V 292 (1265)
T ss_pred ---------------cccccceeecCCCCeEeeeeecCCCCcEEEEecC--CccccccccCCccccc--------c---h
Confidence 1335789999999999983 34789999864 4333333222211100 0 1
Q ss_pred eEEEEcCCCCEEEE---EeCCCcEEEEEcCCC
Q 010933 384 FECSVSGDGLHFAT---GSYSNLLRIFSHGVG 412 (497)
Q Consensus 384 ~~~~~s~~~~~l~s---~~~dg~i~vw~~~~~ 412 (497)
..++|+.++..||+ ......|++|-+.+.
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecCe
Confidence 58999999999997 555566999998775
No 325
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.14 E-value=0.0075 Score=57.76 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=31.5
Q ss_pred ccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeec
Q 010933 324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIH 364 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~ 364 (497)
+++..|++||+|+++|.-.+ |.+.+.+... .+.+..+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~ 257 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD 257 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence 57999999999999998765 9999988765 5556666554
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00013 Score=65.31 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=64.8
Q ss_pred eccCCCCCeeEEEeCCCCC-EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC
Q 010933 209 YPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG 286 (497)
Q Consensus 209 ~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 286 (497)
++..|...|.+++|+|..+ ++..+ .+..|+|.|++ ....... ...+ ..+++++|+-+..++|+.|...|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-t~~~vss-------y~a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-TSCVVSS-------YIAY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecc-cceeeeh-------eecc-CCceeeeeccCCcceeEEeccCc
Confidence 3478889999999999877 56667 99999999999 4444433 3334 78999999988878899999999
Q ss_pred eEEEEEccCCc
Q 010933 287 FVRLVDMRQSA 297 (497)
Q Consensus 287 ~i~v~d~~~~~ 297 (497)
.|.+||++..+
T Consensus 259 ~VlvyD~R~~~ 269 (463)
T KOG1645|consen 259 MVLVYDMRQPE 269 (463)
T ss_pred eEEEEEccCCC
Confidence 99999999754
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.10 E-value=0.0062 Score=54.96 Aligned_cols=265 Identities=11% Similarity=0.059 Sum_probs=138.3
Q ss_pred EEEEEecCCCCEEEEEe----------CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccc
Q 010933 114 RVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 183 (497)
Q Consensus 114 ~l~~~~s~~~~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (497)
.+.. +|+++.+++++ ....|.+||..+-....-...+..+... .-...-....+.++++++.
T Consensus 40 ~~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~------~~~~~~~~~ls~dgk~~~V 111 (342)
T PF06433_consen 40 NVAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ------VVPYKNMFALSADGKFLYV 111 (342)
T ss_dssp EEEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--------BS--GGGEEE-TTSSEEEE
T ss_pred ceeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe------ecccccceEEccCCcEEEE
Confidence 3455 68888888753 4568999999876544332222210000 0001111223445555555
Q ss_pred cccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 184 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
.-+++...+.+-|+..... +..+ ....+..+--+++..+...|.||.+.-..+...++...... + -+..-.
T Consensus 112 ~N~TPa~SVtVVDl~~~kv---v~ei---~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~--~F~~~~ 182 (342)
T PF06433_consen 112 QNFTPATSVTVVDLAAKKV---VGEI---DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-K--VFDPDD 182 (342)
T ss_dssp EEESSSEEEEEEETTTTEE---EEEE---EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE-E--ESSTTT
T ss_pred EccCCCCeEEEEECCCCce---eeee---cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec-c--ccCCCC
Confidence 5566666777777765422 2211 01112222112233344445888888887775554432210 0 122222
Q ss_pred CCeE-EEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933 264 EVIT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 341 (497)
Q Consensus 264 ~~i~-~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 341 (497)
+++. .-++...+ ..++..+.+|.|+--|+...... ....++.-.. .+....+. .+...-+++++..+.|...
T Consensus 183 dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~--~~~~~~~~t~-~e~~~~Wr--PGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 183 DPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAK--FGKPWSLLTD-AEKADGWR--PGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp S-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEE--EEEEEESS-H-HHHHTTEE--E-SSS-EEEETTTTEEEEEE
T ss_pred cccccccceECCC-CeEEEEecCCEEEEEeccCCccc--ccCcccccCc-cccccCcC--CcceeeeeeccccCeEEEEe
Confidence 3332 44556555 66777899999999998765421 1122221000 00000011 1456778888766555542
Q ss_pred ---e-----c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC-EEEEE-eCCCcEEEEEc
Q 010933 342 ---D-----Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG-SYSNLLRIFSH 409 (497)
Q Consensus 342 ---~-----~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~-~~dg~i~vw~~ 409 (497)
. + ..|.++|+.+ ++.+.++...... .++..+.+.+ +|++. ..++.|.+||.
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred cCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 1 1 3788889987 8888888754432 4899999876 66554 45899999999
Q ss_pred CCCCcceEEE
Q 010933 410 GVGSAGGITV 419 (497)
Q Consensus 410 ~~~~~~~~~~ 419 (497)
.+++.+ ..+
T Consensus 320 ~tGk~~-~~~ 328 (342)
T PF06433_consen 320 ATGKLV-RSI 328 (342)
T ss_dssp TT--EE-EEE
T ss_pred cCCcEE-eeh
Confidence 998554 444
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.08 E-value=8.1e-05 Score=73.55 Aligned_cols=152 Identities=17% Similarity=0.220 Sum_probs=103.1
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.|.-|+. +++++.+|...|+|.+-|..+.+.+
T Consensus 179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~i-------------------------------------------- 210 (1118)
T KOG1275|consen 179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETI-------------------------------------------- 210 (1118)
T ss_pred ceEEEEe----cCcEEEeecccceEEeecCCcCcee--------------------------------------------
Confidence 4666665 5678888889999999888776633
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-c---------CCeEEEEeCccCceeeEEeecCCCccC
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---------DLRINLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
.++ ..|++.|.++.. .|+.|+++ . |.-|++||++.-.. +.. +.
T Consensus 211 ----------------ht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~P-------I~ 263 (1118)
T KOG1275|consen 211 ----------------HTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSP-------IQ 263 (1118)
T ss_pred ----------------eee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc-cCC-------cc
Confidence 333 789998877655 57778774 2 45688999884332 221 12
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
-+.++ .-+.|.|.-+..+++++..|...+-|..+-.... ..++- +......+..+.++++|..++.
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~--~~~~~-----------v~p~~s~i~~fDiSsn~~alaf 329 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP--AGVKM-----------VNPNGSGISAFDISSNGDALAF 329 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeeccccccCCCc--cceeE-----------EccCCCcceeEEecCCCceEEE
Confidence 22222 5678899877889999999999999843311100 01111 1122356999999999999999
Q ss_pred Eec-CeEEEEec
Q 010933 341 RDY-MNLKLWDI 351 (497)
Q Consensus 341 ~~~-~~i~lwd~ 351 (497)
|+. |.|.+|.-
T Consensus 330 gd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 330 GDHEGHVNLWAD 341 (1118)
T ss_pred ecccCcEeeecC
Confidence 965 99999973
No 329
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.06 E-value=4.7e-06 Score=78.75 Aligned_cols=211 Identities=15% Similarity=0.195 Sum_probs=126.7
Q ss_pred CCcceEEEEEcCC--CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 31 DVDIVSAIEFDKT--GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 31 h~~~I~~i~~sp~--g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
.+..+.|++.+-+ ..+++.|..+|.|-+-......- .-.-...+|.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd---------------------Ss~E~tp~~a----------- 102 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD---------------------SSAEVTPGYA----------- 102 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCccc---------------------ccceeccccc-----------
Confidence 3567778887654 45889999999999987654311 0011123444
Q ss_pred ccceeEEEEEecCCCCEEEEEe----CCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 109 EEKINRVRWCAAPNGSMFILST----NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
...++++|.+ -|...|++|- .|..+.|||+.++-........+
T Consensus 103 -r~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f------------------------------- 149 (783)
T KOG1008|consen 103 -RPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF------------------------------- 149 (783)
T ss_pred -cccccccccc-ccHHHHHhhhhhhcccCCccceecccccCCCcccccc-------------------------------
Confidence 6789999963 4555666662 56789999998764211110000
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 263 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 263 (497)
..+......+++|..+.+++.+| ....+.++|++....... .-.+
T Consensus 150 -------------------------s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---------svnT 195 (783)
T KOG1008|consen 150 -------------------------SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---------SVNT 195 (783)
T ss_pred -------------------------ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---------hhhh
Confidence 01122334478888999999999 899999999982211111 1123
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEc-cCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEE-
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLS- 340 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~- 340 (497)
..+..+.++|-..+++++-. ||.|.+||. +.-+ +....+.. ...+. ...+..++|.|... .+++
T Consensus 196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie---npl~~i~~-~~N~~--------~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE---NPLQIILR-NENKK--------PKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred hhcccceecCCCCCceeccc-cCceeeccchhhhc---cHHHHHhh-CCCCc--------ccceeeEEeccCCcchhhhh
Confidence 45667788884326666554 999999994 3322 11121111 11100 12588999999643 3333
Q ss_pred Eec-CeEEEEecCC
Q 010933 341 RDY-MNLKLWDIRM 353 (497)
Q Consensus 341 ~~~-~~i~lwd~~~ 353 (497)
..+ +.|++||+..
T Consensus 263 ~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 263 SRDSITIRLYDICV 276 (783)
T ss_pred ccCcceEEEecccc
Confidence 345 9999999864
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.05 E-value=0.0022 Score=60.55 Aligned_cols=268 Identities=13% Similarity=0.114 Sum_probs=126.1
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEEecCCcccc---chhhhh-------hhccc----------CCCCCCcccccccc
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHI---SRSELE-------KQMDF----------TSTSHPEYRYKTEF 93 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~---~~~~~~-------~~~~~----------~~~~~~~~~~~~~~ 93 (497)
.|+++.|+++..-||+|...|.|.||.+...+... .-..++ .+... .+.-+..+.+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999998889999999999999987654321 000000 00000 00001112222222
Q ss_pred cccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccC
Q 010933 94 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEH 173 (497)
Q Consensus 94 ~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (497)
+.. .++|++++. .|-.+++.|..+|.+.|.|+++...+.......
T Consensus 83 ~~~------------~g~vtal~~---S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------- 127 (395)
T PF08596_consen 83 DAK------------QGPVTALKN---SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------- 127 (395)
T ss_dssp ---------------S-SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------
T ss_pred ecc------------CCcEeEEec---CCCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------
Confidence 222 389999998 467799999999999999998766543211100
Q ss_pred CCCCcccccccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeC-----CCC---CEEEEE-cCCeEEEEeCcc
Q 010933 174 NPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNN-----SDC---ETFVSA-DDLRINLWNLEI 244 (497)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~---~~l~~~-~d~~i~iwd~~~ 244 (497)
..........++++.|. .|+ -.+++| ..|.+.+|.+.-
T Consensus 128 ---------------------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 128 ---------------------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp -----------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred ---------------------------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 00002334456666664 233 356678 889999997752
Q ss_pred -CceeeEEeecCCCccCCCCCCeEEEE-EeCCC-C------------------cEEEEEeCCCeEEEEEccCCccccccc
Q 010933 245 -SDQCFNIVDMKPSNMDDLTEVITSAE-FHPIY-C------------------NLLAYSSSRGFVRLVDMRQSALCDHSA 303 (497)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~-~------------------~~l~~~~~dg~i~v~d~~~~~~~~~~~ 303 (497)
.+..+...... ....+.++|..+. ++.+. . +-+++...+..+|++...+.+...
T Consensus 175 ~~~g~f~v~~~~--~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~--- 249 (395)
T PF08596_consen 175 SSNGRFSVQFAG--ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAH--- 249 (395)
T ss_dssp -GGG-EEEEEEE--EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEE---
T ss_pred CCCCceEEEEee--ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccc---
Confidence 22212111000 0124556666555 32210 0 124445557789999887765432
Q ss_pred ceecccccccCCccccccccccccEEEEe-----eCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccccCCC
Q 010933 304 RILRDAAESHGSKSFFTEIIASISDIKFA-----NDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN 377 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (497)
+.++. .-....+.+- ..+..|++- .+|.+++|.+.. -+.+..++.........
T Consensus 250 K~~~~--------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-Lkei~~~~l~~~~d~~~------ 308 (395)
T PF08596_consen 250 KSFDD--------------PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-LKEIKSVSLPPPLDSRR------ 308 (395)
T ss_dssp EE-SS---------------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHH------
T ss_pred eeecc--------------ccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-chHhhcccCCCcccccc------
Confidence 22221 0112233332 234455554 569999999975 67777766543211000
Q ss_pred CCccceeEEEEcCCCCEEEEEeC
Q 010933 378 DSIFDKFECSVSGDGLHFATGSY 400 (497)
Q Consensus 378 ~~~~~~~~~~~s~~~~~l~s~~~ 400 (497)
+....++++|..++-.+.
T Consensus 309 -----~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 309 -----LSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp -----HTT-EE-TTS-EEEE-SS
T ss_pred -----ccccEECCCCCEEEEeCc
Confidence 135778888887765554
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.05 E-value=0.0017 Score=56.77 Aligned_cols=220 Identities=15% Similarity=0.243 Sum_probs=108.7
Q ss_pred cceEEEEEcCCCC-EEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 33 ~~I~~i~~sp~g~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
+.++.++|+|+.+ ++|+....+.|...+.+ |+. .-...+.+. +.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v---------------------lr~i~l~g~-------------~D 66 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV---------------------LRRIPLDGF-------------GD 66 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E---------------------EEEEE-SS--------------SS
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE---------------------EEEEeCCCC-------------CC
Confidence 4599999999755 66667778888777764 322 001123332 33
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCchhe-eccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.-.|++. .++.++++.-.++.+.++++..... ....
T Consensus 67 ~EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~----------------------------------------- 103 (248)
T PF06977_consen 67 YEGITYL--GNGRYVLSEERDQRLYIFTIDDDTTSLDRA----------------------------------------- 103 (248)
T ss_dssp EEEEEE---STTEEEEEETTTTEEEEEEE----TT--EE-----------------------------------------
T ss_pred ceeEEEE--CCCEEEEEEcCCCcEEEEEEeccccccchh-----------------------------------------
Confidence 6778883 5565655555789999998854321 1100
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCcc--CceeeEEeecCC-CccCCCCCCe
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKP-SNMDDLTEVI 266 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~i 266 (497)
..+-+.+. +...+...+-.++|.+.++.|+.+ ...-..+|.+.. ............ .........+
T Consensus 104 ~~~~~~l~----------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 104 DVQKISLG----------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp EEEEEE-------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred hceEEecc----------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 00001110 012345568899999988888777 666666666652 122222111110 0012233557
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 346 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i 346 (497)
.+++++|...++++....+..|..+| .+|+.. ..+........ +...-...-.|+|.++|++.+++.-+..
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~----~~~~L~~g~~g----l~~~~~QpEGIa~d~~G~LYIvsEpNlf 244 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVV----SSLSLDRGFHG----LSKDIPQPEGIAFDPDGNLYIVSEPNLF 244 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EE----EEEE-STTGGG-----SS---SEEEEEE-TT--EEEEETTTEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE----EEEEeCCcccC----cccccCCccEEEECCCCCEEEEcCCceE
Confidence 89999998757777788889999999 555543 22221000000 0001134678999999988877754655
Q ss_pred EEE
Q 010933 347 KLW 349 (497)
Q Consensus 347 ~lw 349 (497)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00024 Score=67.61 Aligned_cols=183 Identities=18% Similarity=0.249 Sum_probs=108.3
Q ss_pred CcceEEEEEcCCCCEEEEee---cC-CeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGD---RG-GRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 107 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 107 (497)
...+..-+|+|+++.++.-+ .. ..+.++++.+++. ..+..+.++.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~---------------------~~i~~~~g~~---------- 240 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR---------------------PVILNFNGNN---------- 240 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc---------------------ceeeccCCcc----------
Confidence 45777788999998876653 22 3689999988754 3344455555
Q ss_pred cccceeEEEEEecCCCCEEEEE-eCCccEEEe--ecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 108 IEEKINRVRWCAAPNGSMFILS-TNDKTIKLW--KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~-s~d~~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
...+| +|||+.++.+ ..|+...|| |+.++....+
T Consensus 241 -----~~P~f--spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L------------------------------------ 277 (425)
T COG0823 241 -----GAPAF--SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL------------------------------------ 277 (425)
T ss_pred -----CCccC--CCCCCEEEEEECCCCCccEEEEcCCCCcceec------------------------------------
Confidence 45678 6888888776 467766666 5554442211
Q ss_pred ccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE--cCCe--EEEEeCccCceeeEEeecCCCccC
Q 010933 185 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR--INLWNLEISDQCFNIVDMKPSNMD 260 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~ 260 (497)
..-.+.-..-.|+|+|+.++.. ..|. |.+++.+ ++.. ..+ +..
T Consensus 278 --------------------------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~-g~~~-~ri-----T~~ 324 (425)
T COG0823 278 --------------------------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE-GSQV-TRL-----TFS 324 (425)
T ss_pred --------------------------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC-CCce-eEe-----ecc
Confidence 1111111245789999999875 5554 4555555 2322 221 122
Q ss_pred CCCCCeEEEEEeCCCCcEEEEEeC-CCe--EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933 261 DLTEVITSAEFHPIYCNLLAYSSS-RGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 337 (497)
Q Consensus 261 ~~~~~i~~~~~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 337 (497)
.-... .-.|+|+| .+|+..+. +|. |.+.|+.++... +.+.. ........+.++|+.
T Consensus 325 ~~~~~--~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~~----~~lt~--------------~~~~e~ps~~~ng~~ 383 (425)
T COG0823 325 GGGNS--NPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGKI----RILTS--------------TYLNESPSWAPNGRM 383 (425)
T ss_pred CCCCc--CccCCCCC-CEEEEEeccCCceeeEEeccCCCCcE----EEccc--------------cccCCCCCcCCCCce
Confidence 22222 66899999 77777664 354 666666655421 33333 123455678888888
Q ss_pred EEEEe
Q 010933 338 LLSRD 342 (497)
Q Consensus 338 l~~~~ 342 (497)
++..+
T Consensus 384 i~~~s 388 (425)
T COG0823 384 IMFSS 388 (425)
T ss_pred EEEec
Confidence 77653
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.98 E-value=0.0036 Score=54.78 Aligned_cols=221 Identities=10% Similarity=0.039 Sum_probs=109.5
Q ss_pred cCCCCCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeE
Q 010933 211 HAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFV 288 (497)
Q Consensus 211 ~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 288 (497)
.+-...+..++|+|+.+.|++ . ..+.|..++.+ ++.+..+. +.+ .+..-.+++..++ .++++.-.++.+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~-----l~g-~~D~EgI~y~g~~-~~vl~~Er~~~L 88 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIP-----LDG-FGDYEGITYLGNG-RYVLSEERDQRL 88 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE------SS--SSEEEEEE-STT-EEEEEETTTTEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEe-----CCC-CCCceeEEEECCC-EEEEEEcCCCcE
Confidence 455667999999998665554 5 77888777765 55555542 334 3456888998877 666655558999
Q ss_pred EEEEccCCccccc--ccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCC--CCceeeee--
Q 010933 289 RLVDMRQSALCDH--SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM--DSTPVATF-- 361 (497)
Q Consensus 289 ~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~--~~~~~~~~-- 361 (497)
.++++........ ....+.. .....+...+-.++|+|.++.|+.+.+ .-..+|.+.. ....+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISL--------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp EEEEE----TT--EEEEEEEE-----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred EEEEEeccccccchhhceEEec--------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 9999854321110 0011111 000123456889999998777776644 5566666652 11111111
Q ss_pred eecccccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccc
Q 010933 362 KIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 440 (497)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 440 (497)
...... .....+..+++++|. +.+++-...+..|..+| .+|+.+ . .+.......+
T Consensus 161 ~~~~~~---------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~-~----------~~~L~~g~~g--- 216 (248)
T PF06977_consen 161 QDLDDD---------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVV-S----------SLSLDRGFHG--- 216 (248)
T ss_dssp HHHH-H---------T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EE-E----------EEE-STTGGG---
T ss_pred cccccc---------cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE-E----------EEEeCCcccC---
Confidence 111100 012223358999996 45666677788899999 444322 1 1111110000
Q ss_pred cccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 441 SLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 441 ~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
+...-..-..|+|.++|++.+++=-|-+|+|.
T Consensus 217 ------------------------l~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f~ 248 (248)
T PF06977_consen 217 ------------------------LSKDIPQPEGIAFDPDGNLYIVSEPNLFYRFE 248 (248)
T ss_dssp -------------------------SS---SEEEEEE-TT--EEEEETTTEEEEEE
T ss_pred ------------------------cccccCCccEEEECCCCCEEEEcCCceEEEeC
Confidence 00001134579999999887777677777773
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.97 E-value=0.0076 Score=56.97 Aligned_cols=246 Identities=13% Similarity=0.073 Sum_probs=120.4
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheec--cccCCCCCccccccccccccCccccCCCCCccccccccccc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKK--IKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 188 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (497)
.|+.+.| .++...|+.+...|.|-||.+...+.-. .........-+.+...
T Consensus 3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~------------------------- 55 (395)
T PF08596_consen 3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLN------------------------- 55 (395)
T ss_dssp -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE------------------S--GG-------------------------
T ss_pred eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccccc-------------------------
Confidence 4888999 5777889999999999999887654221 0000000000000000
Q ss_pred CcceEEEeecCC---c---cceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCC-ccC
Q 010933 189 NMATKIANVGNS---V---HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS-NMD 260 (497)
Q Consensus 189 ~~~~~~~~~~~~---~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~ 260 (497)
++.-.+-|+... . ...+...+ ....++|++++.+.-| +++.| .+|.+.|.|++ +...+..-.+... .-.
T Consensus 56 ~~~~~l~di~~r~~~~~~~gf~P~~l~-~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~ 132 (395)
T PF08596_consen 56 NSPGKLTDISDRAPPSLKEGFLPLTLL-DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSK 132 (395)
T ss_dssp GSS-SEEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE-BTS-EEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-S
T ss_pred CCCcceEEehhhCCcccccccCchhhe-eccCCcEeEEecCCCc-EEEEEecCCcEEEEECC-CCeEEeecccccccccc
Confidence 001112222211 0 11233333 5558899999998666 88899 99999999998 5555544333321 112
Q ss_pred CCCCCeEEEEEeC-----CC--CcEEEEEeCCCeEEEEEccC---CcccccccceecccccccCCccccccccccccEEE
Q 010933 261 DLTEVITSAEFHP-----IY--CNLLAYSSSRGFVRLVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIK 330 (497)
Q Consensus 261 ~~~~~i~~~~~~~-----~~--~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 330 (497)
.....++++.|.- |+ +-.+++|+..|.+.+|.+.- +.......... ..+.+.+..+.
T Consensus 133 ~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-------------~~~~~~i~~I~ 199 (395)
T PF08596_consen 133 SSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-------------TNHDSPILSII 199 (395)
T ss_dssp S----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---------------SS----EEE
T ss_pred ccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-------------ccCCCceEEEE
Confidence 2446688888862 11 14688899999999998752 11111000110 11123333332
Q ss_pred -EeeC---------------------CCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEE
Q 010933 331 -FAND---------------------GQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 388 (497)
Q Consensus 331 -~s~~---------------------g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (497)
|+.+ ..++++.++..+|++...+ .+...... ... ..| ..+.+
T Consensus 200 ~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~--~~~--~~~-----------~~~~v 263 (395)
T PF08596_consen 200 PINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSF--DDP--FLC-----------SSASV 263 (395)
T ss_dssp EEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE---SS---EEE-----------EEEEE
T ss_pred EEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceee--ccc--ccc-----------ceEEE
Confidence 2111 1256667789999999875 44433332 111 011 23444
Q ss_pred -----cCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 389 -----SGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 389 -----s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
...+..|++-..+|.|++|.+..-+++
T Consensus 264 v~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 264 VPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred EeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 235678899999999999999976444
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.97 E-value=3.1e-05 Score=73.18 Aligned_cols=77 Identities=19% Similarity=0.373 Sum_probs=62.1
Q ss_pred ccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccc
Q 010933 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 108 (497)
Q Consensus 29 ~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 108 (497)
+.....|.|++++|+.+.|+.|+.||+|.+||...+. +.+....
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-------------------------t~~~ka~----------- 299 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-------------------------TLLAKAE----------- 299 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-------------------------eeeeeec-----------
Confidence 3467899999999999999999999999999987652 2222222
Q ss_pred ccceeEEEEEecCCCCEEEEEeCCccEEEeecCchh
Q 010933 109 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK 144 (497)
Q Consensus 109 ~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~ 144 (497)
-..+.++| .|+|..+++|+..|.+.+||+.-..
T Consensus 300 -~~P~~iaW--Hp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 300 -FIPTLIAW--HPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred -ccceEEEE--cCCCcEEEEEcCCceEEEEEeecCc
Confidence 34688999 5889999999999999999986543
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00029 Score=67.91 Aligned_cols=216 Identities=13% Similarity=0.158 Sum_probs=122.5
Q ss_pred CCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCccccccccccccc
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 110 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 110 (497)
|...|.--+++..+++|+.|+..|.+++|+..+++.. .....+-. +
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~----------------------~~~~~~~~------------~ 77 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR----------------------KLKNEGAT------------G 77 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh----------------------cccccCcc------------c
Confidence 4556655666778999999999999999998776420 11111111 3
Q ss_pred ceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccCc
Q 010933 111 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 190 (497)
Q Consensus 111 ~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (497)
.+..+.. +++..++|+|+..|.|.++.+..+.....
T Consensus 78 ~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~p~~~------------------------------------------ 113 (726)
T KOG3621|consen 78 ITCVRSV--SSVEYLVAAGTASGRVSVFQLNKELPRDL------------------------------------------ 113 (726)
T ss_pred eEEEEEe--cchhHhhhhhcCCceEEeehhhccCCCcc------------------------------------------
Confidence 3344444 56777888888999999998876331110
Q ss_pred ceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 191 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
+.+ ...-..|...|++++|++++..+.+| ..|.|.+-.++. ... .-.+...+......|..+
T Consensus 114 -~~~------------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s-~~~---~~~~~q~il~~ds~IVQl 176 (726)
T KOG3621|consen 114 -DYV------------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS-RQA---FLSKSQEILSEDSEIVQL 176 (726)
T ss_pred -eee------------ccccccCCceEEEEEecccccEEeecCCCceEEEEEech-hhh---hccccceeeccCcceEEe
Confidence 000 00014588999999999999999999 899999888773 111 001111233345666666
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeC-----CCEEEEEecC
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-----GQHLLSRDYM 344 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~~ 344 (497)
.+... +|++++.- ...+++++.+.. +.+.. . .+. ...-...+|-|. ...|+++. -
T Consensus 177 D~~q~---~LLVStl~-r~~Lc~tE~eti-----~QIG~-k----~R~-----~~~~~GACF~~g~~~~q~~~IycaR-P 236 (726)
T KOG3621|consen 177 DYLQS---YLLVSTLT-RCILCQTEAETI-----TQIGK-K----PRK-----SLIDFGACFFPGQCKAQKPQIYCAR-P 236 (726)
T ss_pred ecccc---eehHhhhh-hhheeecchhHH-----HHhcC-C----CcC-----CccccceEEeeccccCCCceEEEec-C
Confidence 66542 33333322 234555554321 11111 0 000 011234455553 23455543 4
Q ss_pred eEEEEecCCCCceeeee
Q 010933 345 NLKLWDIRMDSTPVATF 361 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~ 361 (497)
..|+|..+..|..+++.
T Consensus 237 G~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 237 GLRLWEADFAGEVIKTH 253 (726)
T ss_pred CCceEEeecceeEEEee
Confidence 57888776656665554
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.87 E-value=0.0075 Score=59.05 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=25.7
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEEcCCCC
Q 010933 384 FECSVSGDGLHFATGSY-SNLLRIFSHGVGS 413 (497)
Q Consensus 384 ~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~ 413 (497)
..+.++|||+++++++. ++.+.|.|+.+.+
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 58999999999886665 9999999998754
No 338
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.86 E-value=0.026 Score=53.28 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=56.7
Q ss_pred ccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC----C---
Q 010933 320 TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG----D--- 391 (497)
Q Consensus 320 ~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~--- 391 (497)
......+.+++.+|++++.|+.+. |+|.++|+.. +..++.+++..... +.|-. .
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAq-----------------c~wi~~~~~~~~~ 365 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQ-----------------CGWIEVPEEGDRD 365 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccce-----------------EEEEEeecccccc
Confidence 344566889999999988888765 9999999986 88888888877642 22211 0
Q ss_pred -------------CCE-EEEEeCCCcEEEEEcCCCCcc
Q 010933 392 -------------GLH-FATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 392 -------------~~~-l~s~~~dg~i~vw~~~~~~~~ 415 (497)
..+ ++-+-.-|.|-||.++++..+
T Consensus 366 ~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 366 RSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred cccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEE
Confidence 112 345667899999999998554
No 339
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.85 E-value=0.0076 Score=53.30 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=60.1
Q ss_pred CCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCC---CCCCeEEEEEeCCCCcEEEEEeCCCe-EEEEEccCCcccc
Q 010933 226 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD---LTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCD 300 (497)
Q Consensus 226 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~ 300 (497)
+..++.+ .++.|..+|.++ ++.+-........... ....+..-....++ .++.++.++. +.+ |+.+++..
T Consensus 122 ~~~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~~- 196 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEKL- 196 (238)
T ss_dssp TTEEEEEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEEE-
T ss_pred cCEEEEEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCEE-
Confidence 6777777 799999999994 4443332211100000 00111222222333 5666677775 555 99998632
Q ss_pred cccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEecCCCCceee
Q 010933 301 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 359 (497)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~~~~~~~~~ 359 (497)
+.. . ...+... ...++..|+.++ ++.|..||+++ ++.+.
T Consensus 197 -----w~~-~------------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~t-G~~~W 236 (238)
T PF13360_consen 197 -----WSK-P------------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKT-GKVVW 236 (238)
T ss_dssp -----EEE-C------------SS-ECEC-EECCCTEEEEEETTTEEEEEETTT-TEEEE
T ss_pred -----EEe-c------------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCC-CCEEe
Confidence 322 0 0112221 345677777765 69999999997 76654
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.84 E-value=0.012 Score=56.43 Aligned_cols=217 Identities=11% Similarity=0.052 Sum_probs=112.9
Q ss_pred CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE-
Q 010933 213 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV- 291 (497)
Q Consensus 213 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~- 291 (497)
.......++++|+|+.++.+.||...++... .-+... .+.-..++|.+. +.+|+-...+.|.++
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k~------------~G~g~~~vw~~~--n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNKA------------FGSGLSFVWSSR--NRYAVLESSSTIKIYK 95 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETT-TTEEEE------------EEE-SEEEE-TS--SEEEEE-TTS-EEEEE
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEcc-CCcccc------------cCceeEEEEecC--ccEEEEECCCeEEEEE
Confidence 3445789999999999999989998888844 222221 133456789985 468888878899996
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccc
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 371 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 371 (497)
++.... . +.+.. ...+..+ -+ |.+|+..+++.|.+||..+ ++.+.++.... +
T Consensus 96 n~~~~~-~----k~i~~--------------~~~~~~I--f~-G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~--v--- 147 (443)
T PF04053_consen 96 NFKNEV-V----KSIKL--------------PFSVEKI--FG-GNLLGVKSSDFICFYDWET-GKLIRRIDVSA--V--- 147 (443)
T ss_dssp TTEE-T-T-----------------------SS-EEEE--E--SSSEEEEETTEEEEE-TTT---EEEEESS-E------
T ss_pred cCcccc-c----eEEcC--------------CcccceE--Ec-CcEEEEECCCCEEEEEhhH-cceeeEEecCC--C---
Confidence 343221 1 12222 0112223 22 8888888778999999997 88898887553 1
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------Cc-ceEEEeccCcceeeeEeecCCCccccc
Q 010933 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SA-GGITVEAGKNENRKPILQAAPRARRSS 441 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~ 441 (497)
..+.|++++++++-.+.+ .++|++.+.. -+ ....+..-...|.+.+|.- + .
T Consensus 148 ------------k~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~--d-~--- 208 (443)
T PF04053_consen 148 ------------KYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE--D-C--- 208 (443)
T ss_dssp ------------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET--T-E---
T ss_pred ------------cEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc--C-E---
Confidence 479999999999988765 7777775432 01 1122222256677777764 2 1
Q ss_pred ccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEe-CCceEEE
Q 010933 442 LSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACAN-GNSLFFH 495 (497)
Q Consensus 442 ~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~-~~~~~i~ 495 (497)
|........+.+ .++..........++.=+...|..+.+.... +.+++.+
T Consensus 209 ---fiYtT~~~lkYl-~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 209 ---FIYTTSNHLKYL-VNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp ---EEEE-TTEEEEE-ETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred ---EEEEcCCeEEEE-EcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence 333333332223 2223333344455666667777666666555 3344443
No 341
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.78 E-value=0.012 Score=54.28 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=73.1
Q ss_pred CCCCeeEEEeCCC-CCEEEEE----cCC-eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC--
Q 010933 213 HDFNINSISNNSD-CETFVSA----DDL-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-- 284 (497)
Q Consensus 213 h~~~v~~~~~~~~-~~~l~~~----~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 284 (497)
....+.-+.|+|. ..+|+.| .+. .-+||-++..+.....+. -......+..=-|.|+| ..|..-+.
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~-----~~~~~e~~gHEfw~~DG-~~i~y~~~~~ 259 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH-----RRMEGESVGHEFWVPDG-STIWYDSYTP 259 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTS-S-EEEEEEET
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-----cCCCCcccccccccCCC-CEEEEEeecC
Confidence 3556778899984 4455555 233 237787765554444321 11123455666799999 54443222
Q ss_pred ---CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-Eec--C--------------
Q 010933 285 ---RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS-RDY--M-------------- 344 (497)
Q Consensus 285 ---dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~--~-------------- 344 (497)
+..|.-+|+.+++.. ..... ......-.++||++++. |+| .
T Consensus 260 ~~~~~~i~~~d~~t~~~~----~~~~~---------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p 320 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTGERR----RLMEM---------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP 320 (386)
T ss_dssp TT--EEEEEE-TTT--EE----EEEEE----------------SEEEEEE-TTSSEEEEEE-------------------
T ss_pred CCCceEEEeeCCCCCCce----EEEeC---------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence 445667777776432 22222 12334445678887765 333 1
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEE-EEeCCCcEEEEEcC
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHG 410 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~~~dg~i~vw~~~ 410 (497)
-|++++++. +.. ..+..|.....++..-..... -...|+|||++++ +....|...||=++
T Consensus 321 ~i~~~~~~~-~~~-~~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 321 WIYLFDVEA-GRF-RKLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEEEETTT-TEE-EEEEE-------BTTBSSTT--------EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred EEEEecccc-Cce-eeeeeccCcceeecCCCccCC----CCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 455677764 332 223223211000000000000 2589999999876 45557887777554
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00044 Score=66.70 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=88.7
Q ss_pred CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933 212 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 290 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 290 (497)
.+...|.--++...+++++.| .-|.+++|+.. ++..... +..+-...+.....+++. .++|.|+..|.|.+
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~-~~~~~~~------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRH-TGEMRKL------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSV 102 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecC-chhhhcc------cccCccceEEEEEecchh-HhhhhhcCCceEEe
Confidence 344555555667788999999 99999999988 5544432 233455666777888887 89999999999999
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCC
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 353 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~ 353 (497)
+-+..+.... ....-..+ ..|...|++++|++++..+++|++ |.|.+-.+..
T Consensus 103 ~ql~~~~p~~-~~~~t~~d----------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 103 FQLNKELPRD-LDYVTPCD----------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ehhhccCCCc-ceeecccc----------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9887743211 10111110 126688999999999999999987 9999888764
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0015 Score=64.53 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=85.5
Q ss_pred cccccCccccCCCCCcccccccccc--cCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEE
Q 010933 163 LLAEKNFMNEHNPPSFAHGYHLEWT--ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL 239 (497)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~i 239 (497)
...++......+-|...+++.+.++ .+|.+.++--... +.+-. .-+-.+.+++|+|..-.|+.| .-|.+.+
T Consensus 12 ~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGE----Pqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 12 LDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGE----PQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDV 85 (1416)
T ss_pred ccccccccccccCCCCceeEEEEecCCCCceEEEEecCCC----CCccc--ccceehhhhccChHHHHHhhccccceeEE
Confidence 3445556667777888888887764 4557777654322 22211 112345679999999889999 9999999
Q ss_pred EeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc
Q 010933 240 WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 294 (497)
Q Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 294 (497)
|... ......+ ...|..+|..+.|+++| ..++++..-|.+.+|...
T Consensus 86 ~~~~-~~e~htv-------~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTN-TTETHTV-------VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecC-Cceeeee-------ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 9987 3333332 56799999999999999 999999999999999876
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.0023 Score=64.78 Aligned_cols=103 Identities=18% Similarity=0.135 Sum_probs=71.4
Q ss_pred EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010933 228 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 306 (497)
Q Consensus 228 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 306 (497)
.-+.| .+..++.||.+..+..+ +... ...-.......|++-+.+| +||+|+.+|.||+||- .|.... ..
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~--v~~~-~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AK---T~- 613 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKL--VDSQ-SKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAK---TA- 613 (794)
T ss_pred ceEEEECCCceEEeccCCCCCce--eecc-ccccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhh---hc-
Confidence 45567 99999999999654221 1100 0011244567788877776 8999999999999993 332111 12
Q ss_pred cccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecC
Q 010933 307 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 352 (497)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~ 352 (497)
+++...+|..|..+.||+|+++..+..+.|++..
T Consensus 614 ------------lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 614 ------------LPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ------------CCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 2333478999999999999999888888888864
No 345
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.72 E-value=0.035 Score=50.29 Aligned_cols=241 Identities=12% Similarity=0.015 Sum_probs=125.6
Q ss_pred EEEeCCCCCEEEE----------E-cCCeEEEEeCccCceeeEEeecCCC-ccCCCCCCeEEEEEeCCCCcEEEEEeC--
Q 010933 219 SISNNSDCETFVS----------A-DDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSS-- 284 (497)
Q Consensus 219 ~~~~~~~~~~l~~----------~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 284 (497)
.+..+|+++.+.+ | ..-.|.+||.. +-....-+.+++. ... .......++++.++ +++++...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~-~~~~~~~~~ls~dg-k~~~V~N~TP 116 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQ-VVPYKNMFALSADG-KFLYVQNFTP 116 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B---BS--GGGEEE-TTS-SEEEEEEESS
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchhe-ecccccceEEccCC-cEEEEEccCC
Confidence 3567899998875 4 55689999998 4444444444432 221 11223445788888 77766544
Q ss_pred CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEee--CCCEEEEEecCeEEEEecCCCCceeeeee
Q 010933 285 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDYMNLKLWDIRMDSTPVATFK 362 (497)
Q Consensus 285 dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~~~i~lwd~~~~~~~~~~~~ 362 (497)
-..|.|.|+..++.. ..+.. --|...-| +..+.+.|.||.+.-..+...++...+..
T Consensus 117 a~SVtVVDl~~~kvv----~ei~~-----------------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVV----GEIDT-----------------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp SEEEEEEETTTTEEE----EEEEG-----------------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred CCeEEEEECCCCcee----eeecC-----------------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 467889999887654 33332 12222223 34456667889999999987677763322
Q ss_pred ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc-eEEEecc----------CcceeeeEe
Q 010933 363 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-GITVEAG----------KNENRKPIL 431 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~----------~~~v~~~~~ 431 (497)
.-.. ..++.++ ..-+++..+..++--+.+|.|+--|+...... ...+..- .+--.-+++
T Consensus 176 ~~F~--------~~~dp~f--~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 176 KVFD--------PDDDPLF--EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp EESS--------TTTS-B---S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred cccC--------CCCcccc--cccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 1111 1122333 34556666555666888999999888765322 1111100 011122344
Q ss_pred ecCCCcccccccceeEeecc-----Cc-eec--CCC-CCcccccccCCCeEEEEEecCCC-EEEEEe--CCceEEEeC
Q 010933 432 QAAPRARRSSLSNLTRGLYR-----QA-HEN--SSS-GHHELSYNLSSKLLHLAWHPTTN-LIACAN--GNSLFFHYA 497 (497)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~d-----~~-~iw--~~~-~~~~~~~~~~~~i~~l~~~p~~~-~la~~~--~~~~~i~~~ 497 (497)
.+. .+++ -+|.-.+.+ .. .|| ... +....-.....++.+|+.+.+.+ +|.+.+ ++.+++|.+
T Consensus 246 ~~~-~~rl---yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 246 HAA-SGRL---YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp ETT-TTEE---EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred ccc-cCeE---EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 442 2222 012222222 23 677 111 12222233455788999999865 665444 456999874
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.03 Score=53.77 Aligned_cols=147 Identities=8% Similarity=0.054 Sum_probs=73.0
Q ss_pred CCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccce
Q 010933 226 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARI 305 (497)
Q Consensus 226 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 305 (497)
|.+|....++.|.+||++ .++.+..++ -.+|..+.|++++ .+++..+.+ .+.+++....... .
T Consensus 117 G~LL~~~~~~~i~~yDw~-~~~~i~~i~---------v~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~----~- 179 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWE-TGKLIRRID---------VSAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVA----A- 179 (443)
T ss_dssp SSSEEEEETTEEEEE-TT-T--EEEEES---------S-E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHH----H-
T ss_pred CcEEEEECCCCEEEEEhh-HcceeeEEe---------cCCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcc----c-
Confidence 777777766699999999 556665431 1248999999999 888888766 5777765432000 0
Q ss_pred ecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeE
Q 010933 306 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 385 (497)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (497)
.+. ..-........+....|.+..|..+ .++-.+.+.++- +.. + ....+..-.... .=
T Consensus 180 ~~~-~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~-G-e~~~i~~ld~~~---------------yl 237 (443)
T PF04053_consen 180 IPE-EGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVN-G-ETGIIAHLDKPL---------------YL 237 (443)
T ss_dssp BTT-TB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EET-T-EEEEEEE-SS-----------------EE
T ss_pred ccc-cCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEc-C-CcceEEEcCCce---------------EE
Confidence 000 0000001111122357888999865 444444446665 322 2 233333222221 35
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 386 CSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 386 ~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
+.+.+..+.|.....|+.+..+.+..
T Consensus 238 lgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 238 LGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEEccCCEEEEEECCCCEEEEEECH
Confidence 77777777888888888888887754
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.62 E-value=0.0097 Score=58.29 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=53.9
Q ss_pred ccccEEEEeeCCCEEEEEec--CeEEEEecCCCCc-----------eeeeeeecccccccccccCCCCCccceeEEEEcC
Q 010933 324 ASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST-----------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 390 (497)
.....+.++|||+++++++. ..+.|.|+.+... .+.+.....++ ...+|.+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg 384 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG 384 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence 45788999999999998753 9999999976221 12222222222 4689999
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 010933 391 DGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 391 ~~~~l~s~~~dg~i~vw~~~~ 411 (497)
+|....|-.-|..|..||+..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEeEeecceeEEEehHH
Confidence 999888888999999999876
No 348
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.52 E-value=0.037 Score=52.16 Aligned_cols=277 Identities=12% Similarity=0.193 Sum_probs=132.7
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCccccccccccc----Ccccccccccc
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSH----EPEFDYLKSLE 107 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~~~~~~~~~ 107 (497)
...+....|||+|+++|... ++.|.+++..++.... .+..|- .+..+++-.-+
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~----------------------lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ----------------------LTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE----------------------SES--TTTEEESB--HHHHHH
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE----------------------eccccceeEEcCccceecccc
Confidence 46788999999999999876 6789999887664311 111110 00011111111
Q ss_pred cccceeEEEEEecCCCCEEEEEe-CCccEEEeecCchh-------eeccccCCCCCccccccccccccCccccCCCCCcc
Q 010933 108 IEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQK-------VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 179 (497)
Q Consensus 108 ~~~~i~~l~~~~s~~~~~l~s~s-~d~~i~iw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (497)
+-+.-..+.| +||+++|+... .+..|+.+.+.... .......+.
T Consensus 99 v~~~~~~~~W--Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk-------------------------- 150 (353)
T PF00930_consen 99 VFDRRSAVWW--SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK-------------------------- 150 (353)
T ss_dssp TSSSSBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B--------------------------
T ss_pred ccccccceEE--CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC--------------------------
Confidence 1123356788 78999999885 45666666543211 011111111
Q ss_pred cccccccccCcceEEEeecCCccceeeee-eccCCCCCeeEEEeCCCCCEEEE-E--c---CCeEEEEeCccCceeeEEe
Q 010933 180 HGYHLEWTENMATKIANVGNSVHARCQKV-YPHAHDFNINSISNNSDCETFVS-A--D---DLRINLWNLEISDQCFNIV 252 (497)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~-~--~---d~~i~iwd~~~~~~~~~~~ 252 (497)
.|.-.+.-.+.++++......+.... -.......+..+.|.++++.|+. - . ...+.+.|..++. .....
T Consensus 151 ---~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~-~~~~~ 226 (353)
T PF00930_consen 151 ---AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE-TRVVL 226 (353)
T ss_dssp ---TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT-CEEEE
T ss_pred ---CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc-eeEEE
Confidence 01111122345566654432211100 01234557889999999984443 1 2 2345566765322 22221
Q ss_pred ecCCCccCCCCCCeEEEEEe-CCCCcEEEEEeCCCe--EEEEEccCCcccccccceecccccccCCcccccccccccc-E
Q 010933 253 DMKPSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGF--VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-D 328 (497)
Q Consensus 253 ~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~ 328 (497)
... ..+--..-....+. +++..+|.....||. |.+++...+.. +.+.. ..-.|. -
T Consensus 227 ~e~---~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-----~~lT~-------------G~~~V~~i 285 (353)
T PF00930_consen 227 EET---SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-----RQLTS-------------GDWEVTSI 285 (353)
T ss_dssp EEE---SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-----EESS--------------SSS-EEEE
T ss_pred Eec---CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-----ecccc-------------Cceeeccc
Confidence 111 11111222344554 666456666666775 44555555431 11111 012343 4
Q ss_pred EEEeeCCCEEE-EEe--c-CeEEEEecCCC-CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933 329 IKFANDGQHLL-SRD--Y-MNLKLWDIRMD-STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 329 ~~~s~~g~~l~-~~~--~-~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
+.++++++.|. ++. + ..-.||.+... +..+..+....... ..+.|||++++++-..
T Consensus 286 ~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---------------~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 286 LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---------------YSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT---------------EEEEE-TTSSEEEEEE
T ss_pred ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc---------------eEEEECCCCCEEEEEE
Confidence 67788877654 343 2 45556655543 45555555443321 2799999999887433
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.51 E-value=0.069 Score=48.40 Aligned_cols=229 Identities=12% Similarity=0.064 Sum_probs=120.6
Q ss_pred CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccc
Q 010933 224 SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHS 302 (497)
Q Consensus 224 ~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 302 (497)
..++.|+.| ++| +++++........++. +...|..+...|+- +.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence 457788888 888 8999984233333331 22349999999987 6555554 599999999865433210
Q ss_pred cceecccccccCCccccccccccccEEE---EeeCCCEEEEEecCeEEEEecCCC---C-ceeeeeeecccccccccccC
Q 010933 303 ARILRDAAESHGSKSFFTEIIASISDIK---FANDGQHLLSRDYMNLKLWDIRMD---S-TPVATFKIHEHLRPKLCDLY 375 (497)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~g~~l~~~~~~~i~lwd~~~~---~-~~~~~~~~~~~~~~~~~~~~ 375 (497)
. ....... ...... -.....+...+ -...+..|+++....|.+|..... . +..+++......
T Consensus 73 ~-~~~~~~~-~~~~~~-~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~-------- 141 (275)
T PF00780_consen 73 A-PLAFPKS-RSLPTK-LPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPP-------- 141 (275)
T ss_pred c-ccccccc-cccccc-ccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCc--------
Confidence 0 0000000 000000 00012233333 122345667777789999988642 1 345555544433
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCc---------ceeeeEeecCCCccccccccee
Q 010933 376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN---------ENRKPILQAAPRARRSSLSNLT 446 (497)
Q Consensus 376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~l~ 446 (497)
..++|. ++.|+.|..+ ...+.|+.++... ..+..... ....+....-.++.+ |.
T Consensus 142 --------~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----Ll 204 (275)
T PF00780_consen 142 --------SSIAFL--GNKICVGTSK-GFYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEF-----LL 204 (275)
T ss_pred --------EEEEEe--CCEEEEEeCC-ceEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceE-----EE
Confidence 578888 5567777654 4778899876442 22211110 111121111112232 33
Q ss_pred EeeccCceec--CCCCCcc-cccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 447 RGLYRQAHEN--SSSGHHE-LSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 447 ~~~~d~~~iw--~~~~~~~-~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
+- +...++ ..|+... .....+....++++ ..++|.+..++.+.||+
T Consensus 205 ~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~ 253 (275)
T PF00780_consen 205 CY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRS 253 (275)
T ss_pred Ee--cceEEEEcCCCCcCcccEEEcCCchhEEEE--ECCEEEEECCCEEEEEE
Confidence 22 222222 3333332 34455556677777 46788888888899886
No 350
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.0041 Score=53.72 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=52.4
Q ss_pred CCCCeeEEEeCCCCCEEEEE-cCCe----EEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCC
Q 010933 213 HDFNINSISNNSDCETFVSA-DDLR----INLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRG 286 (497)
Q Consensus 213 h~~~v~~~~~~~~~~~l~~~-~d~~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg 286 (497)
+.-.|..++.-++|+.++.+ ..|. --+--....++.++.+++++.........|-+++.+.+. .+++.. -..+
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~-glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRD-GLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccC-CeEEEecCCCC
Confidence 34467778888888877765 3321 111122224555666555554444555678888888665 444444 4456
Q ss_pred eEEEEEccCCccc
Q 010933 287 FVRLVDMRQSALC 299 (497)
Q Consensus 287 ~i~v~d~~~~~~~ 299 (497)
...+||..+|..+
T Consensus 303 ~~vi~da~tG~vv 315 (366)
T COG3490 303 RAVIWDAATGAVV 315 (366)
T ss_pred eEEEEEcCCCcEE
Confidence 7889999999754
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.44 E-value=0.15 Score=50.51 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=60.4
Q ss_pred EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE-----------------
Q 010933 278 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS----------------- 340 (497)
Q Consensus 278 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----------------- 340 (497)
.++.++.+|.+...|.++|+.+.+.... ...++.+| +..++.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~--------------------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~ 361 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV--------------------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCK 361 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee--------------------ccccccCC-ceEEEccccccccCcccccCCCC
Confidence 5778888999999999999865321100 01122222 111111
Q ss_pred -EecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 341 -RDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 341 -~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
..+|.+.-.|+.+ ++.+.+......... ... ..... ...+.. .+..|+.++.||.|+.+|.++|+.+
T Consensus 362 ~~~~G~l~AlD~~t-G~~~W~~~~~~~~~~--~~~--g~~~~-~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 362 KPGKGGLAALDPKT-GKVVWEKREGTIRDS--WNI--GFPHW-GGSLAT--AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred CCCceEEEEEeCCC-CcEeeEeeCCccccc--ccc--CCccc-CcceEe--cCCeEEEECCCCeEEEEECCCCcee
Confidence 1236777788876 776666553311000 000 00000 001222 4578999999999999999999665
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.034 Score=56.71 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=84.0
Q ss_pred cEEEEE-eCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-------CEEEEE-ecCeEE
Q 010933 277 NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-------QHLLSR-DYMNLK 347 (497)
Q Consensus 277 ~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-------~~l~~~-~~~~i~ 347 (497)
++|+.. .....|+-.|+..|+.+ ..|..+.. .+| ..+.|+. .-.+.| +++.+.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV----~eW~~~~~------------~~v--~~~~p~~K~aqlt~e~tflGls~n~lf 555 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVV----EEWKVHDD------------IPV--VDIAPDSKFAQLTNEQTFLGLSDNSLF 555 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEE----EEeecCCC------------cce--eEecccccccccCCCceEEEECCCceE
Confidence 454443 34678999999999877 56665221 122 3333432 223344 669999
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCccee
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 427 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 427 (497)
.||.+..+..+..-..+.. ....-| .+++-+.+| +||.|+.+|.||+||- .+..-.
T Consensus 556 riDpR~~~~k~v~~~~k~Y---------~~~~~F--s~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AK----------- 611 (794)
T PF08553_consen 556 RIDPRLSGNKLVDSQSKQY---------SSKNNF--SCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAK----------- 611 (794)
T ss_pred EeccCCCCCceeecccccc---------ccCCCc--eEEEecCCc-eEEEEeCCCcEEeecc-cchhhh-----------
Confidence 9999874432221112211 111112 466666665 7999999999999993 221110
Q ss_pred eeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 428 KPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
..+++...+|.+|..+.||++|++.+..-|.++.
T Consensus 612 -----------------------------------T~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 612 -----------------------------------TALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred -----------------------------------hcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 1122444588888888888888777776666553
No 353
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.35 E-value=0.07 Score=49.82 Aligned_cols=120 Identities=12% Similarity=0.154 Sum_probs=54.5
Q ss_pred cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe--CCCCcEEEEEeCCCeEEEEEc-cCCcccccccceeccc
Q 010933 233 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRDA 309 (497)
Q Consensus 233 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~~ 309 (497)
...++.+||+. ..+..+++++. ........+.|. |+...-++.+-....|..|-- ..++-..+ +++..-
T Consensus 220 yG~~l~vWD~~-~r~~~Q~idLg-----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~ip 291 (461)
T PF05694_consen 220 YGHSLHVWDWS-TRKLLQTIDLG-----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDIP 291 (461)
T ss_dssp S--EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE-
T ss_pred ccCeEEEEECC-CCcEeeEEecC-----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee--EEEECC
Confidence 35689999999 77888887644 222334566664 443122443334444544433 33321111 222210
Q ss_pred cccc------CCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceeee
Q 010933 310 AESH------GSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVAT 360 (497)
Q Consensus 310 ~~~~------~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~~ 360 (497)
.... .-...|..-..-|+.+.+|.|.++|..+. .|.|+.||+....++...
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 0000 00001112235689999999999999885 499999999865555444
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.32 E-value=0.12 Score=47.93 Aligned_cols=155 Identities=9% Similarity=0.011 Sum_probs=72.5
Q ss_pred EEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe--CCCCcEEEEEeC------------
Q 010933 220 ISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSS------------ 284 (497)
Q Consensus 220 ~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~------------ 284 (497)
..++|+.+.++.- .+..++-.|+++ .+...++ ...+..+-...|. .++ ..++-.-.
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy-------~~p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~ 156 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVY-------EVPDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWK 156 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT---EEEEE-------E--TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHH
T ss_pred eEEecCCCeEEEEECCCeEEEEECCc-CcEEEEE-------ECCcccccccceeeCCCc-cEEEEEEEeehhccCccccH
Confidence 4556777787766 677888888884 3333332 2223333334443 334 44433211
Q ss_pred ----------CCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC-CEEEEEec---Ce--EEE
Q 010933 285 ----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY---MN--LKL 348 (497)
Q Consensus 285 ----------dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~---~~--i~l 348 (497)
...|.-.|+.+|+.. .++.. ...+..+.|+|.. .+|+.+-+ .. -||
T Consensus 157 ~f~e~~~a~p~~~i~~idl~tG~~~----~v~~~--------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~Ri 218 (386)
T PF14583_consen 157 GFREFYEARPHCRIFTIDLKTGERK----VVFED--------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRI 218 (386)
T ss_dssp HHHHHHHC---EEEEEEETTT--EE----EEEEE--------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SE
T ss_pred HHHHHHhhCCCceEEEEECCCCcee----EEEec--------------CccccCcccCCCCCCEEEEeccCCcceeceEE
Confidence 123444455555432 33333 3577889999954 45555532 22 378
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCCc
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFSHGVGSA 414 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~i~vw~~~~~~~ 414 (497)
|-+++++...+.+..+... .. +..=-|.|||..|.--+ .+..|.-+|+.+++.
T Consensus 219 W~i~~dg~~~~~v~~~~~~--e~-----------~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 219 WTINTDGSNVKKVHRRMEG--ES-----------VGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEEETTS---EESS---TT--EE-----------EEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred EEEEcCCCcceeeecCCCC--cc-----------cccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 8877767766666544321 11 13446889998776433 245677788888744
No 355
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.29 E-value=0.27 Score=50.31 Aligned_cols=223 Identities=12% Similarity=0.096 Sum_probs=115.7
Q ss_pred CCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC--------------CeEEEE
Q 010933 226 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------------GFVRLV 291 (497)
Q Consensus 226 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------------g~i~v~ 291 (497)
...++++..+.+.+.-++.-++ ..+ .+. ......+.+++.+.. .++.+.+.. ..++++
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqk-l~i-----rtv-pl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQK-LHI-----RTV-PLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred CceEEEecCCceEEEEecchhh-cce-----eee-cCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence 4466777777888877662222 111 111 123445677777743 444444321 135566
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeC-CCEEEEEe----------c-CeEEEEecCCCCceee
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD----------Y-MNLKLWDIRMDSTPVA 359 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~----------~-~~i~lwd~~~~~~~~~ 359 (497)
|-++-+.. ..|.... .+..-.+.++.|..| +.++++|+ . |.|.+|.... .+.++
T Consensus 756 D~nTf~vl-------~~hef~~------~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~ 821 (1096)
T KOG1897|consen 756 DQNTFEVL-------SSHEFER------NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLE 821 (1096)
T ss_pred cCCceeEE-------eeccccc------cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCcee
Confidence 65554322 1111110 011235666778877 67877764 1 7888888865 44444
Q ss_pred eeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCccc
Q 010933 360 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 439 (497)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 439 (497)
....+.-.- .+ .++.. -+|++||.-+ ..|++|+..+.+.+ ..-..+..++..+..... +-.
T Consensus 822 ~v~e~~v~G----------av---~aL~~-fngkllA~In--~~vrLye~t~~~eL-r~e~~~~~~~~aL~l~v~--gde 882 (1096)
T KOG1897|consen 822 LVAETVVKG----------AV---YALVE-FNGKLLAGIN--QSVRLYEWTTEREL-RIECNISNPIIALDLQVK--GDE 882 (1096)
T ss_pred eeeeeeecc----------ce---eehhh-hCCeEEEecC--cEEEEEEcccccee-hhhhcccCCeEEEEEEec--CcE
Confidence 443322110 00 12211 2677776544 58999999877443 555677777777777763 322
Q ss_pred ccccceeEeeccCc-eec--CCCC--Cccccc-ccCCCeEEEEEecCCCEEEEEeCCceEE
Q 010933 440 SSLSNLTRGLYRQA-HEN--SSSG--HHELSY-NLSSKLLHLAWHPTTNLIACANGNSLFF 494 (497)
Q Consensus 440 ~~~~~l~~~~~d~~-~iw--~~~~--~~~~~~-~~~~~i~~l~~~p~~~~la~~~~~~~~i 494 (497)
++.|.--+. .+- ...+ ...... -+..+++++.+-.+..++.+-..+++++
T Consensus 883 -----I~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 883 -----IAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFT 938 (1096)
T ss_pred -----EEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEE
Confidence 555554444 221 1111 111111 2445777777776666665555666654
No 356
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.26 E-value=0.035 Score=41.17 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=41.4
Q ss_pred CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe---CCCCcEEEEEeCCCeEE
Q 010933 214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH---PIYCNLLAYSSSRGFVR 289 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~dg~i~ 289 (497)
...|.++.-... ..++.+ .+|+|-+|+.. .+...+ | .+..+.++.+. .+|...|++|-.+|.|-
T Consensus 42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi---K------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI---K------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee---c------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 456777776665 568888 99999999764 333332 1 22335555543 34445799999898874
Q ss_pred E
Q 010933 290 L 290 (497)
Q Consensus 290 v 290 (497)
+
T Consensus 110 ~ 110 (111)
T PF14783_consen 110 V 110 (111)
T ss_pred e
Confidence 3
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0021 Score=61.49 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=62.4
Q ss_pred CCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeE-EEEEeCCCCcEEEEEeCCCeEEEE
Q 010933 214 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLV 291 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~v~ 291 (497)
...+.-+.|+|.-.++|.+ .+|.|.+.... -.+... ++-+...++ +++|.||| ++||+|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEE
Confidence 4467789999999999999 99999998877 444433 344555555 99999999 999999999999999
Q ss_pred EccCCccc
Q 010933 292 DMRQSALC 299 (497)
Q Consensus 292 d~~~~~~~ 299 (497)
|+.++..+
T Consensus 90 Dve~~~~l 97 (665)
T KOG4640|consen 90 DVEKGGRL 97 (665)
T ss_pred EccCCCce
Confidence 99998765
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0012 Score=62.93 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=73.1
Q ss_pred ccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC
Q 010933 324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 402 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg 402 (497)
..+..+.|+|.-.++|.+.. |.|.++.+. .+.+.++..+...+. ++++|.|||+.||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence 35788999999999999865 989998886 666777775655431 3899999999999999999
Q ss_pred cEEEEEcCCCCcceEEEeccCcceeeeEee
Q 010933 403 LLRIFSHGVGSAGGITVEAGKNENRKPILQ 432 (497)
Q Consensus 403 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~ 432 (497)
+|++-|++++..+......-...|.++.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999999876644444445566666665
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.25 E-value=0.00052 Score=40.13 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=28.6
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd 60 (497)
.|...|.++.|++++.++++|+.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3778999999999999999999999999996
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.22 Score=47.90 Aligned_cols=165 Identities=14% Similarity=0.015 Sum_probs=81.5
Q ss_pred CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCC--CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933 215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKP--SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 292 (497)
+.+.++.|+.+.++++...||.+++||+. +.. +. .+.. ....-.+..+....+..+| ++.-..++.+.+..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~--~f-sl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEF--QF-SLGEEIEEEKVLECRIFAIWFYKNG---IVVLTGNNRFYVVN 153 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cce--ee-chhhhccccCcccccccccccCCCC---EEEECCCCeEEEEe
Confidence 78999999998777766699999999987 333 11 1110 0011122333333444466 34444555554443
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccc
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKL 371 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 371 (497)
--...... +.+.. .+........+........++.+....+.. .++.+.+.+-.. .+. +.....
T Consensus 154 n~~~~~~~---~~~~~---~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~-~~~---i~~~~~----- 218 (410)
T PF04841_consen 154 NIDEPVKL---RRLPE---IPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS-FKQ---IDSDGP----- 218 (410)
T ss_pred Cccccchh---hcccc---CCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc-ccc---ccCCCC-----
Confidence 22211110 11000 000000000111111112344444443333 335555444321 111 211111
Q ss_pred cccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 372 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 372 ~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
+..+++||++++||.-..+|.+.+.+.+-.
T Consensus 219 -----------i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 219 -----------IIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred -----------eEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 268999999999999999999999886544
No 361
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.17 Score=44.54 Aligned_cols=185 Identities=10% Similarity=0.131 Sum_probs=110.1
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
..|.++.| +|+.+.|++......-.+|=...|+++.......
T Consensus 86 ~nvS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g------------------------------------ 127 (316)
T COG3204 86 ANVSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG------------------------------------ 127 (316)
T ss_pred ccccceee--CCCcceEEEecCCCceEEEEecCCceEEEecccc------------------------------------
Confidence 55999999 6888899998888888888777777655432211
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEee--cCCCccCCCCCCe
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD--MKPSNMDDLTEVI 266 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~i 266 (497)
-...-.+.+..+|++.++- .++.++++.+........... ++...........
T Consensus 128 ------------------------~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf 183 (316)
T COG3204 128 ------------------------FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF 183 (316)
T ss_pred ------------------------cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc
Confidence 1122346777777777777 899999988774433322211 1111222225667
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCC-EEEEEec-C
Q 010933 267 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRDY-M 344 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~-~ 344 (497)
-.++|+|.. +.|..+-+-.-+.||.+..+.. .+..|.. ........---..+.++.|++... +|+-+.+ +
T Consensus 184 EGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~~~-~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr 255 (316)
T COG3204 184 EGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVHAS-LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR 255 (316)
T ss_pred eeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccccc-cCcccccceEeeccccceecCCCCcEEEEecCCc
Confidence 899999998 8888888887788887764321 1111100 000000000013577888887544 4444443 7
Q ss_pred eEEEEecCCCCceeeeeeeccc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
.+.-.|.. +.++..+.-+.+
T Consensus 256 ~l~Evd~~--G~~~~~lsL~~g 275 (316)
T COG3204 256 RLLEVDLS--GEVIELLSLTKG 275 (316)
T ss_pred eEEEEecC--CCeeeeEEeccC
Confidence 77777765 666666654443
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.09 E-value=0.16 Score=47.26 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=61.7
Q ss_pred cEEEEEeC---------C-CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeE
Q 010933 277 NLLAYSSS---------R-GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNL 346 (497)
Q Consensus 277 ~~l~~~~~---------d-g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i 346 (497)
.+|++|+. . |.|.++++..........+.... ....++|++++-- +.+|+++..+.|
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-----------~~~~g~V~ai~~~--~~~lv~~~g~~l 109 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-----------TEVKGPVTAICSF--NGRLVVAVGNKL 109 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-----------EEESS-EEEEEEE--TTEEEEEETTEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-----------EeecCcceEhhhh--CCEEEEeecCEE
Confidence 67877754 2 89999999884110000111111 1124678888765 445777777999
Q ss_pred EEEecCCCCc-eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 347 KLWDIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 347 ~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
.+|++.. .+ ....-..+.... ++++.. .+.+|+.|..-..+.++..+.
T Consensus 110 ~v~~l~~-~~~l~~~~~~~~~~~--------------i~sl~~--~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 110 YVYDLDN-SKTLLKKAFYDSPFY--------------ITSLSV--FKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEET-TSSEEEEEEE-BSSS--------------EEEEEE--ETTEEEEEESSSSEEEEEEET
T ss_pred EEEEccC-cccchhhheecceEE--------------EEEEec--cccEEEEEEcccCEEEEEEEc
Confidence 9999986 44 333322222210 134444 466999999988888886654
No 363
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.03 E-value=0.0014 Score=38.18 Aligned_cols=28 Identities=32% Similarity=0.735 Sum_probs=25.1
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEee
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWK 139 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~ 139 (497)
..|.++.| .+++..+++++.|+.+++|+
T Consensus 13 ~~i~~~~~--~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAF--SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEE--CCCCCEEEEecCCCeEEEcC
Confidence 88999999 56678999999999999996
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.00 E-value=0.17 Score=47.07 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=82.6
Q ss_pred CeEEEEeCccC---ceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCc-ccccccceecccc
Q 010933 235 LRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSA-LCDHSARILRDAA 310 (497)
Q Consensus 235 ~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~~ 310 (497)
|.|.++++... ...++.+ .-....++|++++-- .+ . |++ +..+.|.+|++...+ .. +.-..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~-~~g~~l~v~~l~~~~~l~----~~~~~-- 126 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVV-AVGNKLYVYDLDNSKTLL----KKAFY-- 126 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEE-EETTEEEEEEEETTSSEE----EEEEE--
T ss_pred cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEE-eecCEEEEEEccCcccch----hhhee--
Confidence 88999999842 1122221 122356889998877 33 4 443 345799999998876 22 11111
Q ss_pred cccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc
Q 010933 311 ESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 389 (497)
Q Consensus 311 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 389 (497)
...+...+....+.+++.|+- ..+.++..+.....+..+....... .++++.|-
T Consensus 127 ------------~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l 181 (321)
T PF03178_consen 127 ------------DSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFL 181 (321)
T ss_dssp -------------BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE
T ss_pred ------------cceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEe
Confidence 123445555555779999975 8888886654344344444332222 12578888
Q ss_pred CCCCEEEEEeCCCcEEEEEcCC
Q 010933 390 GDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 390 ~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
++++.++.+..+|.+.++....
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-S
T ss_pred cCCcEEEEEcCCCeEEEEEECC
Confidence 6767999999999999999873
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.93 E-value=0.053 Score=40.24 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=62.9
Q ss_pred eEEEEE---eCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-
Q 010933 266 ITSAEF---HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR- 341 (497)
Q Consensus 266 i~~~~~---~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 341 (497)
|+++++ ..+|.+.|++|+.|..||+|+-..- + ..+.. ...++++.-...++ ++.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~----~Ei~e--------------~~~v~~L~~~~~~~-F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--V----AEITE--------------TDKVTSLCSLGGGR-FAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--E----EEEec--------------ccceEEEEEcCCCE-EEEEe
Confidence 344544 4456578999999999999986531 1 22222 25678887776654 5555
Q ss_pred ecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC---CC-CEEEEEeCCCcEE
Q 010933 342 DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DG-LHFATGSYSNLLR 405 (497)
Q Consensus 342 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~-~~l~s~~~dg~i~ 405 (497)
..|+|-+|+- ...+.+.+..... +++++.. || .-|++|-.+|.|-
T Consensus 61 ~NGTVGvY~~---~~RlWRiKSK~~~----------------~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 61 ANGTVGVYDR---SQRLWRIKSKNQV----------------TSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCEEEEEeC---cceeeeeccCCCe----------------EEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5699999975 3445555544432 2444332 33 3688888888874
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.93 E-value=0.0042 Score=38.24 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=29.0
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecC
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVG 63 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~ 63 (497)
...|.+++|+|..++||.|+.+|.|.|+.+..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45799999999999999999999999999843
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.093 Score=45.69 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=68.3
Q ss_pred eEEEEEeCCCCcEEEEEeCCCe-EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--
Q 010933 266 ITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 342 (497)
Q Consensus 266 i~~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-- 342 (497)
-+.++++|..+.-++.+-.-|+ ..++|....+... ++.. ....-|-+ .-.|||||++|.+..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv----~~~s-----~~~RHfyG------HGvfs~dG~~LYATEnd 134 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV----TLVS-----QEGRHFYG------HGVFSPDGRLLYATEND 134 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE----EEec-----ccCceeec------ccccCCCCcEEEeecCC
Confidence 3567788876566677766554 5688888776542 1111 00011112 235999999998852
Q ss_pred -c---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933 343 -Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 343 -~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
| |.|-|||.+..-..+.++..|.-.- ..+.|.+||+.|+.+.
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvan 180 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeC
Confidence 2 8999999986556677777665432 4799999999988765
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.026 Score=53.26 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=67.0
Q ss_pred EE-cCCeEEEEeCccCcee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecc
Q 010933 231 SA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 308 (497)
Q Consensus 231 ~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 308 (497)
.| .|..|+-||.+..+.. +.....+ -........|.+-..+| ++++||.+|.||+||- .+.... ..
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~k---qy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AK---TA--- 466 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSK---QYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAK---TA--- 466 (644)
T ss_pred EeecCCceEEecccccCcceeeeeecc---ccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhh---hc---
Confidence 47 8999999999855542 2221000 01112345566666665 8999999999999996 443221 22
Q ss_pred cccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecC
Q 010933 309 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 352 (497)
Q Consensus 309 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~ 352 (497)
+++...+|..+..+.+|++|++..+..+.+.++.
T Consensus 467 ----------lPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 467 ----------LPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ----------ccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2334478999999999999998887888877764
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.023 Score=53.54 Aligned_cols=140 Identities=12% Similarity=0.143 Sum_probs=85.8
Q ss_pred EEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE--------EEEEecCeEEEE
Q 010933 278 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH--------LLSRDYMNLKLW 349 (497)
Q Consensus 278 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--------l~~~~~~~i~lw 349 (497)
+|..+.....++-.|++.|+.+ ..|..+ ..|+-+.+.|+.+. |+.-+++.|.-|
T Consensus 348 il~~~~~~~~l~klDIE~GKIV----eEWk~~--------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV----EEWKFE--------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred EeeCCCCcCcceeeecccceee----eEeecc--------------CCcceeeccCCcchhcccccccEEeecCCceEEe
Confidence 3444555677888999999876 555552 23666777776432 333367899999
Q ss_pred ecCCCCc-eeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceee
Q 010933 350 DIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 428 (497)
Q Consensus 350 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 428 (497)
|.+-.++ .+..-++|+... ..-| .|++-..+ -+|++||.+|.|++||. .+....
T Consensus 410 DpRv~~~~kl~~~q~kqy~~---------k~nF--sc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AK------------ 464 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQYST---------KNNF--SCFATTES-GYIVVGSLKGDIRLYDR-IGRRAK------------ 464 (644)
T ss_pred cccccCcceeeeeecccccc---------cccc--ceeeecCC-ceEEEeecCCcEEeehh-hhhhhh------------
Confidence 9986454 333333333211 0111 24444444 48999999999999996 442221
Q ss_pred eEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEEEEecCCCEEEEEeCCceEE
Q 010933 429 PILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHLAWHPTTNLIACANGNSLFF 494 (497)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l~~~p~~~~la~~~~~~~~i 494 (497)
..++++..+|.++..+.+|++|++.+..-|.+
T Consensus 465 ----------------------------------TAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 465 ----------------------------------TALPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred ----------------------------------hcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 12334555788888888888877776665544
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.31 Score=42.90 Aligned_cols=176 Identities=7% Similarity=0.031 Sum_probs=100.3
Q ss_pred CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933 212 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 290 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 290 (497)
+-...+.++.|+|+.+.|++- ....-.++ +.+.++.+.++. +.+.. ..-.+.+..++ .+.++--.++.+.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~~GdlirtiP-----L~g~~-DpE~Ieyig~n-~fvi~dER~~~l~~ 154 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTIP-----LTGFS-DPETIEYIGGN-QFVIVDERDRALYL 154 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEE-EecCCceEEEec-----ccccC-ChhHeEEecCC-EEEEEehhcceEEE
Confidence 445569999999999998887 44444343 444677777753 33332 33667788776 66666666888988
Q ss_pred EEccCCcccccccc-eecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceee--eeeeccc
Q 010933 291 VDMRQSALCDHSAR-ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVA--TFKIHEH 366 (497)
Q Consensus 291 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~--~~~~~~~ 366 (497)
+.+........... .+.. .. ...-....-.++|+|..+.|..+-+ .-+.||........+. ....+..
T Consensus 155 ~~vd~~t~~~~~~~~~i~L-~~-------~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 155 FTVDADTTVISAKVQKIPL-GT-------TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred EEEcCCccEEeccceEEec-cc-------cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence 87765532211101 1111 00 0011346778999999888888765 7777777653211111 1111111
Q ss_pred ccccccccCCCCCccceeEEEEcCC-CCEEEEEeCCCcEEEEEcCC
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~~dg~i~vw~~~~ 411 (497)
.. .--+.++.++.|.+. +.+|+-+.+++.+.-.|...
T Consensus 227 ~~--------~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 227 DR--------DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cc--------ceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 10 001223457888875 45555666677777777653
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.74 E-value=0.61 Score=45.19 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=25.2
Q ss_pred cceEEEEEcCCCCEEEEe-ecCC----eEEEEEecCCc
Q 010933 33 DIVSAIEFDKTGDYLAVG-DRGG----RVILFETVGGK 65 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg-~~dg----~i~iwd~~~~~ 65 (497)
-.+....+||||++||.+ +..| .|+++|+.+++
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~ 161 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK 161 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc
Confidence 355578999999999876 3333 59999998874
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.56 Score=42.86 Aligned_cols=127 Identities=11% Similarity=0.063 Sum_probs=75.7
Q ss_pred CeeEEEeCCCCCEEEEE-c-----------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe
Q 010933 216 NINSISNNSDCETFVSA-D-----------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 283 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 283 (497)
..+.+...|+|.+.++. . -|.++.++. .+...+. +..+-..-..++|+|++ +.|+.+.
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l-------~~~~~~~~NGla~SpDg-~tly~aD 181 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRL-------LDDDLTIPNGLAFSPDG-KTLYVAD 181 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--CCCEEEe-------ecCcEEecCceEECCCC-CEEEEEe
Confidence 44566667777666554 3 133444443 2333332 23334455789999999 6666665
Q ss_pred C-CCeEEEEEccC--CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-c-CeEEEEecCCCCcee
Q 010933 284 S-RGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV 358 (497)
Q Consensus 284 ~-dg~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~lwd~~~~~~~~ 358 (497)
. .+.|.-|++.. +..... +. ...+....+..-.++...+|.+.+++. . +.|..|+.. ++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~--~~----------~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~ 247 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGR--RG----------FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLL 247 (307)
T ss_pred CCCCeEEEEecCcccCccCCc--ce----------EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC--CcEE
Confidence 5 58888888763 211111 00 001112235667788888998886553 3 499999986 8888
Q ss_pred eeeeeccc
Q 010933 359 ATFKIHEH 366 (497)
Q Consensus 359 ~~~~~~~~ 366 (497)
..+.....
T Consensus 248 ~~i~lP~~ 255 (307)
T COG3386 248 GEIKLPVK 255 (307)
T ss_pred EEEECCCC
Confidence 88887743
No 373
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.60 E-value=1.1 Score=46.22 Aligned_cols=319 Identities=11% Similarity=0.066 Sum_probs=151.0
Q ss_pred cceeEEEEEecCCCC----EEEEEeCCccEEEe-ecCchheeccccCCCCCccccccccccccCccccCCCCCccccccc
Q 010933 110 EKINRVRWCAAPNGS----MFILSTNDKTIKLW-KVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 184 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~----~l~s~s~d~~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (497)
..|.|+.++|-++++ .++.|..+..+.+- -..+............ .-.-.++.+....+..++.++
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~---------~iPRSIl~~~~e~d~~yLlva 601 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE---------IIPRSILLTTFEGDIHYLLVA 601 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC---------ccchheeeEEeeccceEEEEE
Confidence 779999997654443 45666555544443 2222222211111110 001122333333333444443
Q ss_pred ccccCcceEEEeecCC--ccceeeeeeccCCCCCeeEEEeCCCCC-EEEEEcCCeEEEEeCccCceeeEEeecCCCccCC
Q 010933 185 EWTENMATKIANVGNS--VHARCQKVYPHAHDFNINSISNNSDCE-TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD 261 (497)
Q Consensus 185 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 261 (497)
.- +|.+..+.++.. ......+.. --..++.--.|+..++ .++++.|+-..+|.-+ .+-.+..+.++. ..
T Consensus 602 lg--dG~l~~fv~d~~tg~lsd~Kk~~--lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~ke---v~ 673 (1096)
T KOG1897|consen 602 LG--DGALLYFVLDINTGQLSDRKKVT--LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKE---VN 673 (1096)
T ss_pred cC--CceEEEEEEEcccceEccccccc--cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHH---hh
Confidence 32 555555544432 222222222 1233455455654444 4444488877777766 444444332221 11
Q ss_pred CCCCeEEEEEeCC-CCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 262 LTEVITSAEFHPI-YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 262 ~~~~i~~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
| .+.|+.+ .+..++++. .+.+++.-+..-+... .+.... ......+++.+....+++
T Consensus 674 ~-----~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~--irtvpl--------------~~~prrI~~q~~sl~~~v 731 (1096)
T KOG1897|consen 674 H-----MCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLH--IRTVPL--------------GESPRRICYQESSLTFGV 731 (1096)
T ss_pred h-----hcccccccCCceEEEec-CCceEEEEecchhhcc--eeeecC--------------CCChhheEecccceEEEE
Confidence 1 1123222 223355443 3456666554322111 011222 134566666664444333
Q ss_pred Ee------------c---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC-CCEEEEEe-----
Q 010933 341 RD------------Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD-GLHFATGS----- 399 (497)
Q Consensus 341 ~~------------~---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~~----- 399 (497)
.+ . ..++++|-++ ...+..|+-.. .+.+..+.++.|..| +.++++|.
T Consensus 732 ~s~r~e~~~~~~~ee~~~s~l~vlD~nT----f~vl~~hef~~--------~E~~~Si~s~~~~~d~~t~~vVGT~~v~P 799 (1096)
T KOG1897|consen 732 LSNRIESSAEYYGEEYEVSFLRVLDQNT----FEVLSSHEFER--------NETALSIISCKFTDDPNTYYVVGTGLVYP 799 (1096)
T ss_pred EecccccchhhcCCcceEEEEEEecCCc----eeEEeeccccc--------cceeeeeeeeeecCCCceEEEEEEEeecc
Confidence 21 1 2455666443 44444444321 223333356778887 67777776
Q ss_pred -----CCCcEEEEEcCCCCcceEEEe--ccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCcccccccCCC
Q 010933 400 -----YSNLLRIFSHGVGSAGGITVE--AGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHHELSYNLSSK 471 (497)
Q Consensus 400 -----~dg~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~~~~~~~~~~ 471 (497)
..|+|.||.+.....+ .... .-++.+..+..- +++. +|.-+..-. .-|..++....-..+..+
T Consensus 800 de~ep~~GRIivfe~~e~~~L-~~v~e~~v~Gav~aL~~f---ngkl-----lA~In~~vrLye~t~~~eLr~e~~~~~~ 870 (1096)
T KOG1897|consen 800 DENEPVNGRIIVFEFEELNSL-ELVAETVVKGAVYALVEF---NGKL-----LAGINQSVRLYEWTTERELRIECNISNP 870 (1096)
T ss_pred CCCCcccceEEEEEEecCCce-eeeeeeeeccceeehhhh---CCeE-----EEecCcEEEEEEccccceehhhhcccCC
Confidence 3688999998873232 1111 112333333321 4444 443333323 566555555556677788
Q ss_pred eEEEEEecCCCEEEEEe
Q 010933 472 LLHLAWHPTTNLIACAN 488 (497)
Q Consensus 472 i~~l~~~p~~~~la~~~ 488 (497)
+..+...-.|+.+|+|.
T Consensus 871 ~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 871 IIALDLQVKGDEIAVGD 887 (1096)
T ss_pred eEEEEEEecCcEEEEee
Confidence 88999999999999987
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.55 E-value=0.17 Score=50.87 Aligned_cols=166 Identities=12% Similarity=0.088 Sum_probs=84.9
Q ss_pred CCCeeEEEeCCCCCEEEEE-c------CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC-
Q 010933 214 DFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR- 285 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d- 285 (497)
...+.+.+++|+|+.++.. . |..-.||-...++..... ..+ .....-.|+|+| ..|++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~g--~~~t~PsWspDG-~~lw~v~dg~ 418 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LEG--HSLTRPSWSLDA-DAVWVVVDGN 418 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ecC--CCCCCceECCCC-CceEEEecCc
Confidence 3467889999999998764 2 433344433322322222 122 236778999998 777766543
Q ss_pred CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEE---EecCCCCceeeeee
Q 010933 286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL---WDIRMDSTPVATFK 362 (497)
Q Consensus 286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~l---wd~~~~~~~~~~~~ 362 (497)
..+++.+-.....+ ........ .... .....|..+.|||||..++.-.++.|++ -... ++. ..+.
T Consensus 419 ~~~~v~~~~~~gql----~~~~vd~g--e~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~-~G~--~~l~ 486 (591)
T PRK13616 419 TVVRVIRDPATGQL----ARTPVDAS--AVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTE-DGQ--YALT 486 (591)
T ss_pred ceEEEeccCCCceE----EEEeccCc--hhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCC-CCc--eeec
Confidence 22333222111000 00010000 0000 1135699999999999998876677776 3322 232 2221
Q ss_pred ecccccccccccCCCCCccc-eeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 363 IHEHLRPKLCDLYNNDSIFD-KFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
....... ..-+ +.++.|..++.++ .+..++.-.+|.+.-
T Consensus 487 ~~~~l~~---------~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 487 NPREVGP---------GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred ccEEeec---------ccCCccccceEecCCEEE-EEecCCCCceEEEec
Confidence 0000000 0000 1479999999854 555555555666544
No 375
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.51 E-value=0.16 Score=43.67 Aligned_cols=111 Identities=18% Similarity=0.125 Sum_probs=79.0
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEE
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 348 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~l 348 (497)
...++.+.+++.|+..+.+.--|..+|++..+ ..+. ..+-+-+.- -|.+++.|-. |.+++
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We--~ilg----------------~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE--AILG----------------VRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEee--hhhC----------------ceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 34455547888899999999999999975532 1111 122222222 4667888865 99999
Q ss_pred EecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 349 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
.+..+ +.....+...+... .+....+++..+..|+.|++.+..|..+...+
T Consensus 78 l~~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 78 LCVKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred EEecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 99987 77777776554421 35677789999999999999999999887555
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.018 Score=58.92 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=73.8
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCC
Q 010933 277 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDS 355 (497)
Q Consensus 277 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~ 355 (497)
..++.|+..|.+-..|.+.. +.. -.... .-.++|++++|+.+|+.++.| .+|.|.+||+.. +
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~---~~~ne------------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~ 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGP---LHQNE------------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-A 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cch---hhcCC------------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-C
Confidence 57899999999999988753 110 01111 013789999999999999999 669999999986 8
Q ss_pred ceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 010933 356 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 409 (497)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~ 409 (497)
++++.+..+..+.. ++.-+.+..++..++++...|. +|++
T Consensus 163 k~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 88888877766431 1235666667777888888887 5654
No 377
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.31 E-value=0.075 Score=52.82 Aligned_cols=89 Identities=18% Similarity=0.388 Sum_probs=59.0
Q ss_pred ccccchhhhhcCCCCCCCcccCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccc
Q 010933 10 ASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRY 89 (497)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (497)
....|.....+.. .....+-+.-|.-++..++-+....+.|||...+.. ++
T Consensus 15 ~~~~w~~t~~~~T--------~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l---------------------E~ 65 (631)
T PF12234_consen 15 NKIEWLLTSTFET--------GISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL---------------------EY 65 (631)
T ss_pred CeEEEEEEEEEec--------CCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEE---------------------EE
Confidence 3445666555442 123444555555555555544556899999987643 22
Q ss_pred cccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeec
Q 010933 90 KTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKV 140 (497)
Q Consensus 90 ~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~ 140 (497)
...| ... +.|.++.|...|+++.+++.|..+.|.+|.-
T Consensus 66 ~~~f-~~~------------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 66 EESF-SED------------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred eeee-cCC------------CceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 2333 122 7799999998899999999999999999854
No 378
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.88 Score=43.39 Aligned_cols=173 Identities=10% Similarity=0.111 Sum_probs=108.9
Q ss_pred CeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---CCeEEE
Q 010933 216 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---RGFVRL 290 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~v 290 (497)
.-..+++++.++.+.. . .++.|.+.|.. .......+ ..+. ....++++|++ +.+.++.. ++.+.+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~------~vG~--~P~~~~~~~~~-~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSI------PVGL--GPVGLAVDPDG-KYVYVANAGNGNNTVSV 144 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEe------eecc--CCceEEECCCC-CEEEEEecccCCceEEE
Confidence 3456788888875544 4 78999999977 34444432 1122 56789999999 66666655 688999
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe--cCeEEEEecCCCCceee-----eeee
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTPVA-----TFKI 363 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~lwd~~~~~~~~~-----~~~~ 363 (497)
.|..+.+... ....+ ..+ ..++++|+|+.+.... ++.|.+.|... ....+ ....
T Consensus 145 id~~t~~~~~---~~~vG--------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~ 205 (381)
T COG3391 145 IDAATNKVTA---TIPVG--------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGV 205 (381)
T ss_pred EeCCCCeEEE---EEecC--------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceecccccccccc
Confidence 9988876542 11111 123 8899999999877764 49999999764 33332 1222
Q ss_pred cccccccccccCCCCCccceeEEEEcCCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeccCcceeeeEeec
Q 010933 364 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~ 433 (497)
...+ ..+.++|+|+++...... +.+...|..++......+.........+.+.|
T Consensus 206 ~~~P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 206 GTGP----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred CCCC----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 2222 379999999977655543 58989998876443221222211233455665
No 379
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=1.3 Score=42.14 Aligned_cols=159 Identities=11% Similarity=0.101 Sum_probs=102.5
Q ss_pred CeeEEEeCCCCCEEEEE-c---CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEE-eCCCeEEE
Q 010933 216 NINSISNNSDCETFVSA-D---DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRL 290 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v 290 (497)
....++++++++.+..+ . ++.+.+.|.. .......+ ..+. .+ ..++++|+| ..++.. ..++.|.+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-t~~~~~~~------~vG~-~P-~~~a~~p~g-~~vyv~~~~~~~v~v 186 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-TNKVTATI------PVGN-TP-TGVAVDPDG-NKVYVTNSDDNTVSV 186 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCC-CCeEEEEE------ecCC-Cc-ceEEECCCC-CeEEEEecCCCeEEE
Confidence 45678999999888776 3 6888888887 44444432 1111 23 889999999 655444 57899999
Q ss_pred EEccCCcccc-cccceecccccccCCccccccccccccEEEEeeCCCEEEEEec----CeEEEEecCCCCceeee-eeec
Q 010933 291 VDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY----MNLKLWDIRMDSTPVAT-FKIH 364 (497)
Q Consensus 291 ~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~lwd~~~~~~~~~~-~~~~ 364 (497)
.|........ ........ ...-..+.++|+|.++....+ +.+...|..+ +..... +...
T Consensus 187 i~~~~~~v~~~~~~~~~~~--------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~ 251 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGV--------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVG 251 (381)
T ss_pred EeCCCcceecccccccccc--------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccc
Confidence 9977654321 00000111 134577899999998777643 4788888875 444433 2222
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcCCCCc
Q 010933 365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSA 414 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~~~~~ 414 (497)
.. .+ ..+.++|+|+.+.+... .+.+.+-|..+...
T Consensus 252 ~~-~~--------------~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 252 SG-AP--------------RGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred cC-CC--------------CceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 21 10 36999999999888754 58899999877633
No 380
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.09 E-value=0.32 Score=43.31 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=85.2
Q ss_pred cccEEEEeeCCCEEEEEe--c--CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933 325 SISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 400 (497)
Q Consensus 325 ~i~~~~~s~~g~~l~~~~--~--~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 400 (497)
.+.+.+++++++.+++-. + ..++++... +.......+..- +.-.|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l-----------------~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSL-----------------TRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCcc-----------------ccccccCCCCEEEEEcC
Confidence 588999999999887754 4 555555543 333333333321 57899999888887777
Q ss_pred CCcEEEEE-cCCCCcceEEEeccC--cceeeeEeecCCCcccccccceeEeecc--Cceec------CCCC---Cc----
Q 010933 401 SNLLRIFS-HGVGSAGGITVEAGK--NENRKPILQAAPRARRSSLSNLTRGLYR--QAHEN------SSSG---HH---- 462 (497)
Q Consensus 401 dg~i~vw~-~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~~~~~d--~~~iw------~~~~---~~---- 462 (497)
+...+++. ..++......+.... .+|..+.+++ ++.. +|.-..+ +.++| .... ..
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp--DG~R-----vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP--DGTR-----VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECC--CCcE-----EEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 77777774 334433333333332 2899999999 6655 4444432 22666 1122 11
Q ss_pred ccccccCCCeEEEEEecCCCEEEEEeC
Q 010933 463 ELSYNLSSKLLHLAWHPTTNLIACANG 489 (497)
Q Consensus 463 ~~~~~~~~~i~~l~~~p~~~~la~~~~ 489 (497)
.........+++++|.+++.+++.+..
T Consensus 159 ~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred EecccccCcceeeeecCCCEEEEEeCC
Confidence 111133568899999999998877763
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.07 E-value=1.9 Score=43.54 Aligned_cols=127 Identities=11% Similarity=0.098 Sum_probs=66.2
Q ss_pred eeEEEeCCCCCEEEEE-cC-CeEEEEeCccCceeeEEeecCCCccC-CCCCCeEEEEEeCCCCcEEEEEeCCCeEEE---
Q 010933 217 INSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHPIYCNLLAYSSSRGFVRL--- 290 (497)
Q Consensus 217 v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v--- 290 (497)
...-.|+|+|+.+.+. +. ..+++.+....++. ..+.+...... .....|..+.|+||| ..++... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql-~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL-ARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceE-EEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 6677899998877776 32 33444443322222 21222111111 335679999999999 7776655 467766
Q ss_pred EEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCcee
Q 010933 291 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 358 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~ 358 (497)
-....|.........+. ......+..+.|.+++.+++...++.-.+|.+.-++...
T Consensus 476 vr~~~G~~~l~~~~~l~------------~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~ 531 (591)
T PRK13616 476 EQTEDGQYALTNPREVG------------PGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNS 531 (591)
T ss_pred EeCCCCceeecccEEee------------cccCCccccceEecCCEEEEEecCCCCceEEEecCCccc
Confidence 33333321100000011 011233578999999986644444444456555444433
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.04 E-value=1.2 Score=40.80 Aligned_cols=150 Identities=14% Similarity=0.031 Sum_probs=79.9
Q ss_pred EEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEE-EeCCCCcEEEEEeCCCeEEEEEccCC
Q 010933 220 ISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE-FHPIYCNLLAYSSSRGFVRLVDMRQS 296 (497)
Q Consensus 220 ~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~ 296 (497)
-.|.++...|+- - ..+.|.-|+........ +. +...+.++. .+..+ .|+++.. -+.+++..++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~---------~~-~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~ 95 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV---------FP-SPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTG 95 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE---------EE-CCCCcccceeecCCC--eEEEEcc--ccEEEeccCC
Confidence 356777775554 4 88999999987332222 11 122223333 44443 4544433 2556666554
Q ss_pred cccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e---------cCeEEEEecCCCCceeeeeeeccc
Q 010933 297 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---------YMNLKLWDIRMDSTPVATFKIHEH 366 (497)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---------~~~i~lwd~~~~~~~~~~~~~~~~ 366 (497)
............ . -....+.+...|+|.+.++. . ...-.||-+...+...+.+..+-.
T Consensus 96 ~~~t~~~~~~~~------~------~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 96 GKITLLAEPEDG------L------PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred ceeEEeccccCC------C------CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 432100011111 0 01456788889999887763 2 111144444422444444443221
Q ss_pred ccccccccCCCCCccceeEEEEcCCCCEEEEEeC-CCcEEEEEcC
Q 010933 367 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHG 410 (497)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~-dg~i~vw~~~ 410 (497)
. -+.++||||++.|+.+.. .+.|+-|++.
T Consensus 164 ~---------------~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 164 I---------------PNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred e---------------cCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 1 158999999988776665 5888888876
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.037 Score=56.78 Aligned_cols=84 Identities=10% Similarity=-0.004 Sum_probs=60.8
Q ss_pred CCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 334 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 334 ~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
.+..++.|++ |.+-..|... . +..+ |.+.. ...++++++|+.+|+.++.|-.+|.|.+||+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~--n-L~~~--~~ne~----------v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTG--N-LGPL--HQNER----------VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhc--c-cchh--hcCCc----------cCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 4557888876 9999888863 2 1111 11110 1122479999999999999999999999999987
Q ss_pred CcceEEEeccCcceeeeEeec
Q 010933 413 SAGGITVEAGKNENRKPILQA 433 (497)
Q Consensus 413 ~~~~~~~~~~~~~v~~~~~~~ 433 (497)
. +.+.+..|..|...+.+..
T Consensus 163 k-~l~~i~e~~ap~t~vi~v~ 182 (1206)
T KOG2079|consen 163 K-ILKVITEHGAPVTGVIFVG 182 (1206)
T ss_pred c-ceeeeeecCCccceEEEEE
Confidence 4 4488888888888887764
No 384
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.87 E-value=1 Score=38.86 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=45.0
Q ss_pred CCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCC
Q 010933 44 GDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG 123 (497)
Q Consensus 44 g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~ 123 (497)
.++++.|+..+.+.--|.++|+. ...+.+. .+|.+-+.. -|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~---------------------~We~ilg---------------~RiE~sa~v---vg 63 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL---------------------IWEAILG---------------VRIECSAIV---VG 63 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE---------------------EeehhhC---------------ceeeeeeEE---EC
Confidence 56888899999999999888864 2222222 334444432 25
Q ss_pred CEEEEEeCCccEEEeecCchhee
Q 010933 124 SMFILSTNDKTIKLWKVRDQKVK 146 (497)
Q Consensus 124 ~~l~s~s~d~~i~iw~~~~~~~~ 146 (497)
.+++.|...|.+.+-++.+|...
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~ 86 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQI 86 (354)
T ss_pred CEEEEEEccCcEEEEEecchhhe
Confidence 68999999999999999998643
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.85 E-value=1.3 Score=39.97 Aligned_cols=252 Identities=11% Similarity=0.084 Sum_probs=125.7
Q ss_pred CCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEEEEEecC
Q 010933 42 KTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAP 121 (497)
Q Consensus 42 p~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~ 121 (497)
..++.|+.|+.+| |.+++...... ..... +. ..|..+... +
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~----------------------~~~i~--~~------------~~I~ql~vl--~ 45 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK----------------------PTRIL--KL------------SSITQLSVL--P 45 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc----------------------ceeEe--ec------------ceEEEEEEe--c
Confidence 3578999999998 89999832211 01111 11 348888885 4
Q ss_pred CCCEEEEEeCCccEEEeecCchheeccccCCCCCcccccc-ccccccCccc-c--CCCCCcccccccccccCcceEEEee
Q 010933 122 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN-TLLAEKNFMN-E--HNPPSFAHGYHLEWTENMATKIANV 197 (497)
Q Consensus 122 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (497)
+-..+++-+ |+.+.++++..-...........+...... .......... . ........+..+. ...+.+|..
T Consensus 46 ~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~---kk~i~i~~~ 121 (275)
T PF00780_consen 46 ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV---KKKILIYEW 121 (275)
T ss_pred ccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE---CCEEEEEEE
Confidence 434555444 499999998765433211000000000000 0000000111 1 1111112222222 447788877
Q ss_pred cCCc-cc-eeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCc-----cCCCCCCeEEEE
Q 010933 198 GNSV-HA-RCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN-----MDDLTEVITSAE 270 (497)
Q Consensus 198 ~~~~-~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~ 270 (497)
.... .. ...+.+ .-...+.+++|. ++.++.|......+.|+. .+....+.+..... ......++..+.
T Consensus 122 ~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 196 (275)
T PF00780_consen 122 NDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGTSKGFYLIDLN-TGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ 196 (275)
T ss_pred ECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEeCCceEEEecC-CCCceEEeCccCCcchhhhcccCCCceEEEE
Confidence 7642 22 333433 334678889988 567888855558888988 44444432211101 001122333333
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEe
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 350 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd 350 (497)
.. ++ .+|++ . |..-.+.|. .|+......-.|+ .....+++. ..||++-.++.|.||+
T Consensus 197 ~~-~~-e~Ll~-~-~~~g~fv~~-~G~~~r~~~i~W~----------------~~p~~~~~~--~pyli~~~~~~iEV~~ 253 (275)
T PF00780_consen 197 LS-DN-EFLLC-Y-DNIGVFVNK-NGEPSRKSTIQWS----------------SAPQSVAYS--SPYLIAFSSNSIEVRS 253 (275)
T ss_pred eC-Cc-eEEEE-e-cceEEEEcC-CCCcCcccEEEcC----------------CchhEEEEE--CCEEEEECCCEEEEEE
Confidence 33 33 45543 2 333333343 4433321112222 245566664 4588887777899999
Q ss_pred cCCCCceeeeeeecc
Q 010933 351 IRMDSTPVATFKIHE 365 (497)
Q Consensus 351 ~~~~~~~~~~~~~~~ 365 (497)
+.+ +++++++....
T Consensus 254 ~~~-~~lvQ~i~~~~ 267 (275)
T PF00780_consen 254 LET-GELVQTIPLPN 267 (275)
T ss_pred CcC-CcEEEEEECCC
Confidence 997 88888887554
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.77 E-value=0.75 Score=40.94 Aligned_cols=69 Identities=10% Similarity=0.026 Sum_probs=42.2
Q ss_pred CeeEEEeCCCCCEEEEE----cCCeEEEEeCccCcee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC
Q 010933 216 NINSISNNSDCETFVSA----DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR 285 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 285 (497)
.|..+.++|||..++.- .++.|.+--+.....- ...+.............+..++|.+++ .+++.+...
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V~~~~~ 186 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVVLGRSA 186 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEEEeCCC
Confidence 89999999999998763 3677777655422211 111000000112335688999999998 666665543
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.72 E-value=0.041 Score=33.90 Aligned_cols=30 Identities=17% Similarity=0.577 Sum_probs=26.7
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 141 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~ 141 (497)
..|..++| +|...++|.++.+|.|.++.+.
T Consensus 12 ~~v~~~~w--~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSW--CPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEE--CCCCCEEEEEECCCeEEEEECC
Confidence 67999999 5677799999999999999984
No 388
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.51 E-value=2.4 Score=40.97 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=39.0
Q ss_pred CCCeeEEEeCCCCCEEEEEc-CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC
Q 010933 214 DFNINSISNNSDCETFVSAD-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY 275 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 275 (497)
-...+.|+|.|+|++|++-. .|.|++++.. .........++.......+.....|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~-~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPE-TGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCC-CCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45678999999998888874 7999999765 2222222111111011136778999999873
No 389
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.35 E-value=2.5 Score=42.94 Aligned_cols=75 Identities=9% Similarity=0.102 Sum_probs=51.9
Q ss_pred CCCeeEEEeC--CCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCC--Cc---EEEEEeCC
Q 010933 214 DFNINSISNN--SDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIY--CN---LLAYSSSR 285 (497)
Q Consensus 214 ~~~v~~~~~~--~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~---~l~~~~~d 285 (497)
...+++++++ ...++||++ ....|.+|-.......... ..-..+...|.+|+|-++. +. .+++++-.
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~-----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~ 237 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH-----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS 237 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc-----ccccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence 4578999998 888889888 7788888765522111111 0012367788999997653 12 77888999
Q ss_pred CeEEEEEc
Q 010933 286 GFVRLVDM 293 (497)
Q Consensus 286 g~i~v~d~ 293 (497)
|.+.+|++
T Consensus 238 G~v~~~~I 245 (717)
T PF08728_consen 238 GEVWTFKI 245 (717)
T ss_pred CcEEEEEE
Confidence 99999888
No 390
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=2.6 Score=39.67 Aligned_cols=78 Identities=18% Similarity=0.323 Sum_probs=52.8
Q ss_pred cCCcceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccc
Q 010933 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 109 (497)
Q Consensus 30 ~h~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 109 (497)
...++|.++.||+|.+.||+--.+.+|.+++....+. ......+.+.-+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~-------------------~l~~~~~ck~k~------------ 112 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS-------------------QLEYTQECKTKN------------ 112 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch-------------------hhHHHHHhccCc------------
Confidence 3567999999999999999999999999999854421 011122222223
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCc
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD 142 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~ 142 (497)
..|....|. ++.-++..+..| +-+|.+..
T Consensus 113 ~~IlGF~W~---~s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 113 ANILGFCWT---SSTEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred ceeEEEEEe---cCeeEEEEecCC-eEEEEEch
Confidence 568889994 335666666555 66666544
No 391
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.24 E-value=0.012 Score=58.89 Aligned_cols=131 Identities=10% Similarity=0.043 Sum_probs=72.3
Q ss_pred CCCeeEEEeCC---CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE-----------EEeCCCCcE
Q 010933 214 DFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA-----------EFHPIYCNL 278 (497)
Q Consensus 214 ~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~~ 278 (497)
..++.-+.|.| +.-++..+ .++.|++.++++..+ .+ +.+|...+..+ .++||| ..
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l-------~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv 249 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SL-------FRSHSQRVTDMAFFAEGVLKLASLSPDG-TV 249 (1283)
T ss_pred CCCcceeeecccccccceeeeccCCCceeEeeechHHH--HH-------HHhcCCCcccHHHHhhchhhheeeCCCC-cE
Confidence 33444555544 55667778 889999887774333 21 33455444333 368999 99
Q ss_pred EEEEeCCCeEEEEEccC-CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec--CeEEEEecCCCC
Q 010933 279 LAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDS 355 (497)
Q Consensus 279 l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~~~ 355 (497)
|+.+..||.++.|-+.- |+........|+.|...+...--+..|...+..+.+ -.++++++| ..+++|.... .
T Consensus 250 ~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~---w~~~Itttd~nre~k~w~~a~-w 325 (1283)
T KOG1916|consen 250 FAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGK---WVLRITTTDVNREEKFWAEAP-W 325 (1283)
T ss_pred EEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccce---eEEEEecccCCcceeEeeccc-h
Confidence 99999999999887642 333333335555543222111111111111111111 135566665 7899998764 5
Q ss_pred cee
Q 010933 356 TPV 358 (497)
Q Consensus 356 ~~~ 358 (497)
+++
T Consensus 326 ~Cl 328 (1283)
T KOG1916|consen 326 QCL 328 (1283)
T ss_pred hhh
Confidence 555
No 392
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.24 E-value=2.6 Score=39.29 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=37.1
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCC
Q 010933 216 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 274 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 274 (497)
..++|+|.|+|+++++-..|.|++++.. +.....+..+. ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence 4578999999988776699999999933 33212222221 223445677899999995
No 393
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.23 E-value=2.3 Score=38.66 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=61.6
Q ss_pred CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933 212 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 291 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~ 291 (497)
.....|.++.|.|++.+.+.+..|.|+.=+.......... .......-.-.+..++|.+++ ...|+|+ .|.+ +.
T Consensus 184 ~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~ 257 (302)
T PF14870_consen 184 NSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LV 257 (302)
T ss_dssp -SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EE
T ss_pred CccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EE
Confidence 3467899999999998888778999988772212222111 000111233447899999987 6666554 4433 33
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEE
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 349 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lw 349 (497)
....|+. ++.... . ..-...++.+.|.++.+-++.|.+|.|--|
T Consensus 258 S~DgGkt-------W~~~~~-~------~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 258 STDGGKT-------WQKDRV-G------ENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ESSTTSS--------EE-GG-G------TTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred eCCCCcc-------ceECcc-c------cCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 4455532 222000 0 011246889999988889999988877654
No 394
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.22 E-value=0.51 Score=48.49 Aligned_cols=96 Identities=10% Similarity=0.097 Sum_probs=57.7
Q ss_pred cccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccc-------cCCCCCccceeEEEEcCC---C
Q 010933 323 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD-------LYNNDSIFDKFECSVSGD---G 392 (497)
Q Consensus 323 ~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~---~ 392 (497)
.-.|..+.++|+|++++..+...|.|-.+.........+.+... ...|- ++.......+..+.|+|. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~--~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKK--EINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCc--ceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 35688999999999999876666666665321000011110000 01111 111112223578999996 5
Q ss_pred CEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 393 LHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 393 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
.+|+.-..|+.+++||+........++.
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 8999999999999999987655544443
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.17 E-value=0.7 Score=44.85 Aligned_cols=70 Identities=11% Similarity=-0.040 Sum_probs=43.8
Q ss_pred EEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 219 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 219 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
.+.|+|....|+.= ....-.++++......++. + + ...+-|+|.+|.+||.+++++.+..=.-++||-..
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 46788988877764 3333344566544444432 1 2 35678999999999955555555555677887654
No 396
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.17 E-value=3.8 Score=40.68 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=20.9
Q ss_pred CEEEEEeCCccEEEeecCchheecc
Q 010933 124 SMFILSTNDKTIKLWKVRDQKVKKI 148 (497)
Q Consensus 124 ~~l~s~s~d~~i~iw~~~~~~~~~~ 148 (497)
..++.++.++.|.-+|.++|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~ 135 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWK 135 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeee
Confidence 5788888999999999999886543
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.09 E-value=3.7 Score=40.18 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=37.9
Q ss_pred CCCCeeEEEeCCCCCEEEEE--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC
Q 010933 213 HDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 284 (497)
Q Consensus 213 h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 284 (497)
..+.|.|.+|.+||+.|+.+ ..=.-++||-. .+ ..... ..-....-.+.|.++.-.-+ ..+|++.+
T Consensus 154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~-qK-tL~~C--sfcPVFdv~~~Icsi~AT~d--sqVAvaTE 221 (671)
T PF15390_consen 154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA-QK-TLHRC--SFCPVFDVGGYICSIEATVD--SQVAVATE 221 (671)
T ss_pred CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc-hh-hhhhC--CcceeecCCCceEEEEEecc--ceEEEEec
Confidence 35679999999999999988 33355778754 22 11110 00012233456666655444 45666655
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.85 E-value=1.8 Score=43.38 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=71.3
Q ss_pred CeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe--CCCCcEEEEEeCCCeEEEEE
Q 010933 216 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~dg~i~v~d 292 (497)
...-+.-+.-++..+.. ....+.|||.+.+.-.... .+ ...+.|.++.|. |++ +.+++.+..+.|.+|-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEE
Confidence 33444445555555555 6779999999833322211 12 457889999986 677 7888888899999886
Q ss_pred ccCC-----cccccccceecccccccCCcccccccc-ccccEEEEeeCCCEEEEEecCeEEEEecC
Q 010933 293 MRQS-----ALCDHSARILRDAAESHGSKSFFTEII-ASISDIKFANDGQHLLSRDYMNLKLWDIR 352 (497)
Q Consensus 293 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~i~lwd~~ 352 (497)
-... ......++.+.- ..|+ .+|....|.++|.++ +|.++.+.|+|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i-----------~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDI-----------SSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEEe-----------ecCCCCCccceeEecCCeEE-EEeCCEEEEECCC
Confidence 4221 111111111111 1222 578899999998554 4455888888754
No 399
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.77 E-value=0.14 Score=43.13 Aligned_cols=105 Identities=14% Similarity=-0.003 Sum_probs=64.1
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEe-eCCCEEEEE-ecCeEEEEecCCC
Q 010933 277 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSR-DYMNLKLWDIRMD 354 (497)
Q Consensus 277 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~-~~~~i~lwd~~~~ 354 (497)
..+++|+.+|.|.+|......... ..... -...|-++.-. .++.+..++ .++.||.|++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~---d~~~s-------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p- 133 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHS---DRVCS-------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP- 133 (238)
T ss_pred ceEEeecccceEEEecCCccchHH---Hhhhc-------------ccccceeccccccccceeEEeccCCceeeecccc-
Confidence 679999999999999987321110 11111 01223332221 233455555 569999999985
Q ss_pred CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEE--eCCCcEEEEEcCCC
Q 010933 355 STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVG 412 (497)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--~~dg~i~vw~~~~~ 412 (497)
.+.+.....|... .. ..+..+..+++|+.. |.|..++.|++..-
T Consensus 134 ~k~~g~~g~h~~~-----------~~---e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 134 NKVLGYVGQHNFE-----------SG---EELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CceeeeeccccCC-----------Cc---ceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 7766666666521 11 245566667778877 88888888888754
No 400
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=0.72 Score=48.24 Aligned_cols=154 Identities=10% Similarity=-0.013 Sum_probs=89.9
Q ss_pred CeeEEEeCCCCCEEEEE---cCCeEEEEeCccCceee--EEeecCC-CccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEE
Q 010933 216 NINSISNNSDCETFVSA---DDLRINLWNLEISDQCF--NIVDMKP-SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 289 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~--~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 289 (497)
++..+..++|++..++- .+-.|..||++.-.... +...++- .+......-..++.|+|.-+...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45556667777666553 44578889987321111 0100000 011112233457789988656778888899999
Q ss_pred EEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeeccccc
Q 010933 290 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 368 (497)
Q Consensus 290 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~ 368 (497)
+.-+....... ..+.. ....++++|+|.|+.++.|.. |.+.-|... ......+.....
T Consensus 182 V~~~~~~~~~v---~s~p~--------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~-- 240 (1405)
T KOG3630|consen 182 VKSTKQLAQNV---TSFPV--------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPV-- 240 (1405)
T ss_pred hhhhhhhhhhh---cccCc--------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCc--
Confidence 88775432211 11221 246899999999999999965 999888764 333333332221
Q ss_pred ccccccCCCCCccceeEEEEcCCCCEEEEEe
Q 010933 369 PKLCDLYNNDSIFDKFECSVSGDGLHFATGS 399 (497)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~ 399 (497)
++ -+.+.+++|-....+|++-+
T Consensus 241 ------~e---~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 241 ------EE---NYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ------CC---CcceeEEEEecceeEEEEec
Confidence 11 12236889987777776433
No 401
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.41 E-value=0.16 Score=30.25 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=24.3
Q ss_pred cccEEEEeeCC---CEEEEEec-CeEEEEecCC
Q 010933 325 SISDIKFANDG---QHLLSRDY-MNLKLWDIRM 353 (497)
Q Consensus 325 ~i~~~~~s~~g---~~l~~~~~-~~i~lwd~~~ 353 (497)
.+.++.|+|+. .+|+.+.+ +.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58899999854 58888877 9999999984
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.31 E-value=0.2 Score=29.88 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=26.9
Q ss_pred CCeEEEEEeCCCC--cEEEEEeCCCeEEEEEccC
Q 010933 264 EVITSAEFHPIYC--NLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 264 ~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~ 295 (497)
+.++++.|+|... .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998762 5888888899999999995
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.15 E-value=0.14 Score=43.10 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=41.4
Q ss_pred CCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE-EEEeCCCCcEEEEEeCCCeEEEEEccCCcc
Q 010933 225 DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-AEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 298 (497)
Q Consensus 225 ~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 298 (497)
-+..+++| .+|.|++|+....+..... ...-...|-+ +.-..++ .+..++..||.||.|++.-.+.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence 35577788 9999999988733332221 1111222332 2223334 5888999999999999987643
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.13 E-value=1.9 Score=44.45 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecC
Q 010933 378 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENS 457 (497)
Q Consensus 378 ~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~ 457 (497)
...|.|..+.++|+|++||..|..|.. |-.+...-.....+++....+.+..+.-+ .++
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~--~~~------------------ 140 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVD--ERF------------------ 140 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEec--hhh------------------
Confidence 356778899999999999998886554 44443210111334445555555555442 111
Q ss_pred CCCCcccccccCCCeEEEEEecCC---CEEEEEe-CCceEEEe
Q 010933 458 SSGHHELSYNLSSKLLHLAWHPTT---NLIACAN-GNSLFFHY 496 (497)
Q Consensus 458 ~~~~~~~~~~~~~~i~~l~~~p~~---~~la~~~-~~~~~i~~ 496 (497)
-.......|..+.|||.+ ..|++=+ ++.+.+|+
T Consensus 141 ------~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 141 ------FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred ------ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 011234488999999974 5665544 66788887
No 405
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.11 E-value=3.9 Score=36.10 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=93.2
Q ss_pred eeeeeccCCCCCeeEEEeCCCCCEEEE-E--cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEE
Q 010933 205 CQKVYPHAHDFNINSISNNSDCETFVS-A--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 281 (497)
Q Consensus 205 ~~~~~~~~h~~~v~~~~~~~~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 281 (497)
.+..+..........+.|..+|.++-+ | ....|+.+|+. +++.....++++.- ---.++...+ .+...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~-tg~~~~~~~l~~~~------FgEGit~~~d--~l~qL 105 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLE-TGKVLQSVPLPPRY------FGEGITILGD--KLYQL 105 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETT-TSSEEEEEE-TTT--------EEEEEEETT--EEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECC-CCcEEEEEECCccc------cceeEEEECC--EEEEE
Confidence 445542233344567888777877766 4 35589999999 55555444333211 1133444443 45555
Q ss_pred EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeee
Q 010933 282 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT 360 (497)
Q Consensus 282 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~ 360 (497)
.-.++...+||..+.+.+ ..+.. .+.=+.++ .+++.|+.++. ..++++|..+ .+...+
T Consensus 106 TWk~~~~f~yd~~tl~~~----~~~~y--------------~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~ 164 (264)
T PF05096_consen 106 TWKEGTGFVYDPNTLKKI----GTFPY--------------PGEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRT 164 (264)
T ss_dssp ESSSSEEEEEETTTTEEE----EEEE---------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEE
T ss_pred EecCCeEEEEccccceEE----EEEec--------------CCcceEEE--cCCCEEEEECCccceEEECCcc-cceEEE
Confidence 566899999999876544 33332 12345565 56666666543 8999999875 666776
Q ss_pred eeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933 361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
+....... .+..++.+.|- +|...|=.=....|..-|..+|+
T Consensus 165 i~V~~~g~----------pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 165 IQVTDNGR----------PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp EE-EETTE----------E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred EEEEECCE----------ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 66554322 11112467775 66666655556677777877773
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.96 E-value=4.8 Score=36.67 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccc
Q 010933 224 SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA 303 (497)
Q Consensus 224 ~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 303 (497)
.++..++++..|.|+ .....++..+.+ .......+..+.-+++| .++++++.-....-||--.
T Consensus 113 ~~~~~~l~~~~G~iy--~T~DgG~tW~~~------~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~-------- 175 (302)
T PF14870_consen 113 GDGSAELAGDRGAIY--RTTDGGKTWQAV------VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ-------- 175 (302)
T ss_dssp ETTEEEEEETT--EE--EESSTTSSEEEE------E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------
T ss_pred CCCcEEEEcCCCcEE--EeCCCCCCeeEc------ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--------
Confidence 334444445444433 333345444432 23345778888899999 8777776665566677543
Q ss_pred ceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933 304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 383 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (497)
..+..|... -...|..|.|+|++.+.+.+..|.|++=+... ....+..+.... ...-+.+
T Consensus 176 ~~w~~~~r~---------~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~---~~~~w~~~~~~~--------~~~~~~~ 235 (302)
T PF14870_consen 176 TTWQPHNRN---------SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD---DGETWSEPIIPI--------KTNGYGI 235 (302)
T ss_dssp SS-EEEE-----------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT---EEEEE---B-TT--------SS--S-E
T ss_pred ccceEEccC---------ccceehhceecCCCCEEEEeCCcEEEEccCCC---CccccccccCCc--------ccCceee
Confidence 223322211 12569999999999988887778888877321 122222211110 0011223
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 384 FECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 384 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
.+++|.+++...++|+. |.+ +...+.|
T Consensus 236 ld~a~~~~~~~wa~gg~-G~l-~~S~DgG 262 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGS-GTL-LVSTDGG 262 (302)
T ss_dssp EEEEESSSS-EEEEEST-T-E-EEESSTT
T ss_pred EEEEecCCCCEEEEeCC-ccE-EEeCCCC
Confidence 68999999887776665 443 3344444
No 407
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.81 E-value=4.1 Score=38.70 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=55.7
Q ss_pred CCeeEEEeCCCCCEEEEE-c-----------C-CeEEEEeCccC-cee--eEEeecCCCccCCCCCCeEEEEEeCCCCcE
Q 010933 215 FNINSISNNSDCETFVSA-D-----------D-LRINLWNLEIS-DQC--FNIVDMKPSNMDDLTEVITSAEFHPIYCNL 278 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~-~-----------d-~~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 278 (497)
.....|+|.++|+++++- . . ..|.+++-... ++. ..+ +.......+.+++.+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v-------fa~~l~~p~Gi~~~~~G--- 83 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV-------FAEELSMVTGLAVAVGG--- 83 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE-------eecCCCCccceeEecCC---
Confidence 345678999999988773 2 1 26777754312 221 122 22222345788998886
Q ss_pred EEEEeCCCeEEEEEccCCcccc-cccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 279 LAYSSSRGFVRLVDMRQSALCD-HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 279 l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
|+++......++.|........ +....+..-... -..+......+.|.|||.+.++
T Consensus 84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~------~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQ------INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCC------CCcccccccCceECCCCCEEEe
Confidence 4444455444444554321111 111122210000 0001245788999999987665
No 408
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=7.8 Score=39.14 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=53.8
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEE
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 268 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 268 (497)
...|++++..+. .+....-.|. .+-.+.|+.+..+|+...+|++++|++- +. ...... ...+.....|..
T Consensus 63 ~~~I~If~~sG~----lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge-~ie~~s---vg~e~~~~~I~e 132 (829)
T KOG2280|consen 63 RPYIRIFNISGQ----LLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLL-GE-FIESNS---VGFESQMSDIVE 132 (829)
T ss_pred ceeEEEEecccc----chHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecc-hh-hhcccc---cccccccCceeE
Confidence 346777777654 3333322344 7778999999888887899999999987 32 222100 012334456677
Q ss_pred EEEeCCCCcEEEEEeCCCeEEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRL 290 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v 290 (497)
+.+..+| ++.-..+|.+.+
T Consensus 133 c~~f~~G---Vavlt~~g~v~~ 151 (829)
T KOG2280|consen 133 CRFFHNG---VAVLTVSGQVIL 151 (829)
T ss_pred EEEecCc---eEEEecCCcEEE
Confidence 7766677 444445555444
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.75 E-value=4 Score=38.78 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=20.5
Q ss_pred cceEEEEEcCCCCEEEEee-----------cCC-eEEEEEec
Q 010933 33 DIVSAIEFDKTGDYLAVGD-----------RGG-RVILFETV 62 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~-----------~dg-~i~iwd~~ 62 (497)
.....|+|.++|+++++-. ..+ .|.+++-.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~ 55 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDA 55 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcC
Confidence 3557899999999877642 223 77777654
No 410
>PHA02713 hypothetical protein; Provisional
Probab=93.55 E-value=8.1 Score=39.05 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=18.7
Q ss_pred CCCEEEEEeCCC--cEEEEEcCCCCc
Q 010933 391 DGLHFATGSYSN--LLRIFSHGVGSA 414 (497)
Q Consensus 391 ~~~~l~s~~~dg--~i~vw~~~~~~~ 414 (497)
+++..++||.|| .+..||..+.+-
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 778888999888 677788777643
No 411
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.53 E-value=0.48 Score=40.99 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=51.5
Q ss_pred EeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEe
Q 010933 271 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWD 350 (497)
Q Consensus 271 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd 350 (497)
+...+ ++|++.+.+|.+++||+.+++..........--.... ... ......|..+.++.+|.-+++-++|..+.|+
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~-~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP-VSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc-ccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 34456 7899999999999999999876543322111100000 000 0234678888888888888877778889998
Q ss_pred cCC
Q 010933 351 IRM 353 (497)
Q Consensus 351 ~~~ 353 (497)
...
T Consensus 94 ~~L 96 (219)
T PF07569_consen 94 PDL 96 (219)
T ss_pred ccc
Confidence 764
No 412
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.04 E-value=5.9 Score=34.87 Aligned_cols=164 Identities=14% Similarity=0.067 Sum_probs=94.8
Q ss_pred CCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeC---------C
Q 010933 215 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS---------R 285 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------d 285 (497)
..-..+..-|||..-++-...-|.-.|-++. .++.+.++ .+..........|++.| ++-+++.. .
T Consensus 104 a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~--evt~f~lp---~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~ 177 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGLAIGRLDPKTL--EVTRFPLP---LEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPAR 177 (353)
T ss_pred CCCceEEECCCCCeeEecCcceeEEecCccc--ceEEeecc---cccCCCcccceeeCCCc-cEEEeeccccceecCccc
Confidence 3444566778887666642225555555422 22222222 34455677888999999 88777753 2
Q ss_pred CeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeec
Q 010933 286 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIH 364 (497)
Q Consensus 286 g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~ 364 (497)
+.|++|+...| ..-+.|+..|+|+.-++. .++.|-..|... + .-..+...
T Consensus 178 ~~i~vfpaPqG---------------------------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P 228 (353)
T COG4257 178 NVISVFPAPQG---------------------------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQP 228 (353)
T ss_pred CceeeeccCCC---------------------------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCC
Confidence 34555554433 346788899999877764 335555556543 2 22222211
Q ss_pred ccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcc
Q 010933 365 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 425 (497)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 425 (497)
+... .+.+.+.-+|.|+.-++-...+.++.||-.+..-....|.+.+..
T Consensus 229 ~~~~------------~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~ar 277 (353)
T COG4257 229 NALK------------AGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKAR 277 (353)
T ss_pred Cccc------------ccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCC
Confidence 1100 001457777888888888888899999877665554555544443
No 413
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.95 E-value=7.9 Score=36.10 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933 34 IVSAIEFDKTGDYLAVGDRGGRVILFE 60 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~dg~i~iwd 60 (497)
.-+.|+|.|||+++++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 3478999999987765 5699999999
No 414
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.87 E-value=11 Score=37.68 Aligned_cols=171 Identities=12% Similarity=0.060 Sum_probs=88.3
Q ss_pred EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCC--CCeEE-EEEeCCCCcEEEEEe------CCCeEEEEEccCCc
Q 010933 228 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EVITS-AEFHPIYCNLLAYSS------SRGFVRLVDMRQSA 297 (497)
Q Consensus 228 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~-~~~~~~~~~~l~~~~------~dg~i~v~d~~~~~ 297 (497)
.++.+ .|+.+.-.|.++++...+.- ...+. ..+.+ ..+. ++ .++++. .+|.|.-+|.++|+
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~------~~~~~~~~~~tssP~v~-~g--~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKK------NGDYKAGYTITAAPLVV-KG--KVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecc------cccccccccccCCcEEE-CC--EEEEeecccccCCCcEEEEEECCCCc
Confidence 45555 88899999988555544321 11111 01111 1111 33 444443 26899999999998
Q ss_pred ccccccceeccccc----------ccCCcccc------ccccccccEEEEeeCCCEEEEEe------cC-----------
Q 010933 298 LCDHSARILRDAAE----------SHGSKSFF------TEIIASISDIKFANDGQHLLSRD------YM----------- 344 (497)
Q Consensus 298 ~~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~i~~~~~s~~g~~l~~~~------~~----------- 344 (497)
.+.+....-.. .. ......+. .+-...-..+++.|...++..+. ++
T Consensus 193 ~lW~~~~~p~~-~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~ 271 (527)
T TIGR03075 193 LVWRRYTVPGD-MGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTS 271 (527)
T ss_pred eeEeccCcCCC-cccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccce
Confidence 65432111100 00 00000000 01112233567777766666543 12
Q ss_pred eEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 010933 345 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL---HFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 345 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
+|.-.|+++ ++....++...+... ..+......=+....+|+ .++.+..+|.+++.|..+++.+
T Consensus 272 s~vAld~~T-G~~~W~~Q~~~~D~w------D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDT-GKIKWHYQTTPHDEW------DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEcccc-CCEEEeeeCCCCCCc------cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 566778876 777777665333211 111111001133334666 7889999999999999998653
No 415
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.55 E-value=12 Score=37.37 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=21.9
Q ss_pred CCCC--cEEEEEeCCCeEEEEEccCCccc
Q 010933 273 PIYC--NLLAYSSSRGFVRLVDMRQSALC 299 (497)
Q Consensus 273 ~~~~--~~l~~~~~dg~i~v~d~~~~~~~ 299 (497)
.+|. ..++.+..+|.+.+.|.++|+.+
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4562 37888999999999999999864
No 416
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.40 E-value=4 Score=38.65 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=57.9
Q ss_pred CcceEEEeecCCccceeeeeeccCCC-CCeeEEEeC--CCCCEE-EEE-cCCeEEEEeCccCc--eeeEEeecCCCccCC
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHD-FNINSISNN--SDCETF-VSA-DDLRINLWNLEISD--QCFNIVDMKPSNMDD 261 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~--~~~~~l-~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~ 261 (497)
+..+.+||+... +.++++--+.. .....+.|. |+...= +.+ -..+|..|--...+ +..+++++++...++
T Consensus 221 G~~l~vWD~~~r---~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 221 GHSLHVWDWSTR---KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp --EEEEEETTTT---EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred cCeEEEEECCCC---cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 456777777744 33443311222 234566764 434333 333 56666666442222 122333333221111
Q ss_pred -----C-------CCCeEEEEEeCCCCcEEEEEeC-CCeEEEEEccCCcccccccceecccccccCCcccc--ccccccc
Q 010933 262 -----L-------TEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF--TEIIASI 326 (497)
Q Consensus 262 -----~-------~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 326 (497)
. ..-|+.+..|.|. ++|..+.. +|.|+.||+.........-+++-+-.......... ....+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDD-rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDD-RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred ccccccccccccCCCceEeEEEccCC-CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 1 3568999999998 77766655 89999999986432211111111100000000000 0112345
Q ss_pred cEEEEeeCCCEEEEE
Q 010933 327 SDIKFANDGQHLLSR 341 (497)
Q Consensus 327 ~~~~~s~~g~~l~~~ 341 (497)
.-+..|-||+.|...
T Consensus 377 qMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVT 391 (461)
T ss_dssp --EEE-TTSSEEEEE
T ss_pred CeEEEccCCeEEEEE
Confidence 778888899887765
No 417
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=2.9 Score=40.12 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=57.0
Q ss_pred ccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCC
Q 010933 380 IFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSS 459 (497)
Q Consensus 380 ~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~ 459 (497)
.+.+..+..++.|..++-.|.+|.+.++=.+.... ...++..+..|++..+.-. .++ .+.+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~-~s~~eDgk~~v~CRt~~i~--~~~------ftss---------- 163 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGK-NSEFEDGKSTVNCRTTPVA--ERF------FTSS---------- 163 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCc-cceecCCCceEEEEeeccc--cee------eccC----------
Confidence 34457888999999999999999877655332212 2556666666777777652 221 1110
Q ss_pred CCcccccccCCCeEEEEEecCC---C-EEEEEeCCceEEEe
Q 010933 460 GHHELSYNLSSKLLHLAWHPTT---N-LIACANGNSLFFHY 496 (497)
Q Consensus 460 ~~~~~~~~~~~~i~~l~~~p~~---~-~la~~~~~~~~i~~ 496 (497)
..-.+..++|||+. . +++..+++.+.+|+
T Consensus 164 --------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 164 --------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred --------CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 11156788999976 3 44555577788886
No 418
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.33 E-value=13 Score=38.06 Aligned_cols=165 Identities=12% Similarity=0.059 Sum_probs=89.4
Q ss_pred CCEEEEEcCCeEEEEeCccCceeeE-----EeecCCCccC---------CCCCCeEEEEEeCCC-CcEEEEEeCCCeEEE
Q 010933 226 CETFVSADDLRINLWNLEISDQCFN-----IVDMKPSNMD---------DLTEVITSAEFHPIY-CNLLAYSSSRGFVRL 290 (497)
Q Consensus 226 ~~~l~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~v 290 (497)
.++++.+..+.|.||+.+...+... .+..++.... .....|..+....-| ...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 6788888899999999873222111 1111111000 012335555444322 267889999999999
Q ss_pred EEccCCcccccccceeccccc------ccCCccccccccccccEEEEe--eCCCEEEEEec-CeEEEEecCCCCceeeee
Q 010933 291 VDMRQSALCDHSARILRDAAE------SHGSKSFFTEIIASISDIKFA--NDGQHLLSRDY-MNLKLWDIRMDSTPVATF 361 (497)
Q Consensus 291 ~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~s--~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~ 361 (497)
|.++.--... ........ ...+. +........++++++ ...++||+++. ..|.||-...........
T Consensus 129 Yyt~~I~~~i---~~~~~~~~~~~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 129 YYTETIIEAI---ERFSEDNDSGFSRLKIKPF-FHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEHHHHHHHH---HhhccccccccccccCCCC-eEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence 9875311000 00000000 00011 111123578999998 77888988876 788887654311111111
Q ss_pred e--ecccccccccccCCCCCccceeEEEEcCCC------CEEEEEeCCCcEEEEEc
Q 010933 362 K--IHEHLRPKLCDLYNNDSIFDKFECSVSGDG------LHFATGSYSNLLRIFSH 409 (497)
Q Consensus 362 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~l~s~~~dg~i~vw~~ 409 (497)
+ .+...+ -+++|-++. ..|++++-.|.+.+|++
T Consensus 205 ~s~~~~hNI---------------P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSHQHSHNI---------------PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccCC---------------CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 0 122222 367877643 27888999999999888
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=92.02 E-value=11 Score=35.34 Aligned_cols=119 Identities=8% Similarity=-0.012 Sum_probs=68.6
Q ss_pred CCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEE
Q 010933 212 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 291 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~ 291 (497)
.-...++++.+.++++.++.|..|.+++=..+ .+...+....+ .......+.++.+.|++ .. +.++.+|.+..
T Consensus 212 ~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~~---~~~~~~~l~~v~~~~~~-~~-~~~G~~G~v~~- 284 (334)
T PRK13684 212 NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPIIP---EITNGYGYLDLAYRTPG-EI-WAGGGNGTLLV- 284 (334)
T ss_pred CCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccCC---ccccccceeeEEEcCCC-CE-EEEcCCCeEEE-
Confidence 33457889999999998888877776532233 34333321000 01122457888999876 54 44556775553
Q ss_pred EccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEec
Q 010933 292 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDI 351 (497)
Q Consensus 292 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~ 351 (497)
....++. |..... . ..-....+.+.|..+++.+++|..|.|--|+-
T Consensus 285 S~d~G~t-------W~~~~~-~------~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 285 SKDGGKT-------WEKDPV-G------EEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred eCCCCCC-------CeECCc-C------CCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 3344422 211000 0 00013577888888888888888888887763
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.78 E-value=0.19 Score=50.86 Aligned_cols=109 Identities=17% Similarity=0.296 Sum_probs=64.5
Q ss_pred hhccccccchhhhhcCCCCCCCccc----CC---cceEEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcc
Q 010933 6 EEASASLEWKCSQAFGERNPDEELQ----DV---DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMD 78 (497)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~----h~---~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 78 (497)
......+.|++.++-|+..+.-.+. -. +.|.-+-|-++.-++..+..++.|++.......
T Consensus 150 ~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~------------- 216 (1283)
T KOG1916|consen 150 RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL------------- 216 (1283)
T ss_pred HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-------------
Confidence 3445667899988777654322111 12 334444445577788888899999988776532
Q ss_pred cCCCCCCcccccccccccCcccccccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecC
Q 010933 79 FTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR 141 (497)
Q Consensus 79 ~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~ 141 (497)
...+++|... .+.--.+...+.-++=. +|||..|+.++.||.++.|.+.
T Consensus 217 -----------~~l~rsHs~~--~~d~a~~~~g~~~l~~l-SpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 217 -----------RSLFRSHSQR--VTDMAFFAEGVLKLASL-SPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred -----------HHHHHhcCCC--cccHHHHhhchhhheee-CCCCcEEEEeecCCccceeeee
Confidence 2445667621 00000111222223222 6899999999999999998765
No 421
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.73 E-value=1.4 Score=38.10 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=49.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccc
Q 010933 386 CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELS 465 (497)
Q Consensus 386 ~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~ 465 (497)
+.+..++++|++.+.+|.+++||+.+++...... .-.|+....... .
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~--Si~pll~~~~~~-------------------------------~ 62 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPV--SIAPLLNSSPVS-------------------------------D 62 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCc--cHHHHhcccccc-------------------------------c
Confidence 4456688999999999999999999874431110 001110000000 0
Q ss_pred cccCCCeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 466 YNLSSKLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 466 ~~~~~~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
......|..+..+.+|.-|++-+.+..|.|+
T Consensus 63 ~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 63 KSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 0334578888888888878877777788886
No 422
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.52 E-value=12 Score=34.88 Aligned_cols=184 Identities=12% Similarity=0.098 Sum_probs=88.6
Q ss_pred CCeeEEEeCC-CCCEEEEEcCCe------EEEEeCccCc---eeeEE---eecCC---CccCCCCCCeEEEEEeCCCCcE
Q 010933 215 FNINSISNNS-DCETFVSADDLR------INLWNLEISD---QCFNI---VDMKP---SNMDDLTEVITSAEFHPIYCNL 278 (497)
Q Consensus 215 ~~v~~~~~~~-~~~~l~~~~d~~------i~iwd~~~~~---~~~~~---~~~~~---~~~~~~~~~i~~~~~~~~~~~~ 278 (497)
+.+..+.+.+ ++.+++.++++. ++.+++.... ..+.. +.++. ..+..-....-++++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 4567888885 555555557776 6666655311 11111 11110 0111111244578887777 77
Q ss_pred EEEEeCC------CeEEEEEccCCcccccccceecccc-cccCCc-cccccccccccEEEEeeCCCEEEEEe------cC
Q 010933 279 LAYSSSR------GFVRLVDMRQSALCDHSARILRDAA-ESHGSK-SFFTEIIASISDIKFANDGQHLLSRD------YM 344 (497)
Q Consensus 279 l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~~------~~ 344 (497)
+++.-.+ ..|+.++.. |+.. ..+.... ..+... ..-......+-+|+++|+|+.|+++. ++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 7766666 788888876 5543 1111100 000000 01112246788999999999555431 21
Q ss_pred --e-------EEEEecC--CCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEe-----CCCcEEEEE
Q 010933 345 --N-------LKLWDIR--MDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-----YSNLLRIFS 408 (497)
Q Consensus 345 --~-------i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~-----~dg~i~vw~ 408 (497)
. ++++... +.+.....+...-..+.. ....+.+..+.+-+++++|+-=- ....++|+.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 1 5555443 223334443322221000 00122336888888988776221 234455555
Q ss_pred cC
Q 010933 409 HG 410 (497)
Q Consensus 409 ~~ 410 (497)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 44
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.38 E-value=4.4 Score=38.88 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=63.2
Q ss_pred EEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecc
Q 010933 230 VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 308 (497)
Q Consensus 230 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 308 (497)
+.| .+..|.-.|.+..+..+.....+. -.......+..-..+ .++|+++..|-|++||--..+.. ..+
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esKd---Y~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAK----tal-- 599 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESKD---YKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAK----TAL-- 599 (776)
T ss_pred EEeecccceEEecccccCCceeeeeehh---ccccccccccccccC--ceEEEecCCCceeeehhhcchhh----hcC--
Confidence 346 788888888876664444432221 011222233333334 48999999999999995432211 112
Q ss_pred cccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecC
Q 010933 309 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR 352 (497)
Q Consensus 309 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~ 352 (497)
++....|..+..+.+|+++++.....+.+-|++
T Consensus 600 -----------P~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 600 -----------PGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred -----------cccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 222357889999999999888766788888875
No 424
>PHA02713 hypothetical protein; Provisional
Probab=91.06 E-value=14 Score=37.36 Aligned_cols=20 Identities=5% Similarity=0.016 Sum_probs=13.7
Q ss_pred CCCEEEEEe-cC--eEEEEecCC
Q 010933 334 DGQHLLSRD-YM--NLKLWDIRM 353 (497)
Q Consensus 334 ~g~~l~~~~-~~--~i~lwd~~~ 353 (497)
+|++.++|+ ++ .+..||..+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeeecceeehhhcCccc
Confidence 677777765 34 677788765
No 425
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=21 Score=36.38 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=30.8
Q ss_pred ccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeee
Q 010933 324 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKI 363 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~ 363 (497)
+.+..++.||+.++|+-=++ |.|.+-+... .+.+..+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~ 256 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNC 256 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCC
Confidence 56788999999999988655 9999988875 666666653
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.75 E-value=9.9 Score=32.64 Aligned_cols=143 Identities=11% Similarity=0.054 Sum_probs=81.0
Q ss_pred CCCeeEEEeCCCCCEEEEE-cC---------CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEe
Q 010933 214 DFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS 283 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 283 (497)
..+.+.-..+|+|++++.. .| |.++.|-.. .+.-.+ ...-..-..++|+.+...+.++-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence 3345566778999886542 22 344444433 111111 011123357889988744455556
Q ss_pred CCCeEEEEE--ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeee
Q 010933 284 SRGFVRLVD--MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVAT 360 (497)
Q Consensus 284 ~dg~i~v~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~ 360 (497)
.+-.|.-|| ..+|..... ..++......+.. ...--.+++..+|.+.++. +.++|...|..+ ++.+.+
T Consensus 178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~e 248 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPFE-------SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLE 248 (310)
T ss_pred CceEEeeeecCCCcccccCc-ceeEEeccCCCcC-------CCCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEE
Confidence 677887777 666654321 1222221110000 0122345667788877776 459999999987 999999
Q ss_pred eeecccccccccccCCCCCccceeEEEEcC
Q 010933 361 FKIHEHLRPKLCDLYNNDSIFDKFECSVSG 390 (497)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 390 (497)
++-....+ ++++|--
T Consensus 249 iklPt~qi---------------tsccFgG 263 (310)
T KOG4499|consen 249 IKLPTPQI---------------TSCCFGG 263 (310)
T ss_pred EEcCCCce---------------EEEEecC
Confidence 88776543 6888864
No 427
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.61 E-value=18 Score=35.24 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=25.5
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEecCC
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~ 64 (497)
-+.-+.|+|.|||++|++--..|.|++++..++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 355689999999988877554699999986544
No 428
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.37 E-value=18 Score=35.00 Aligned_cols=114 Identities=11% Similarity=0.132 Sum_probs=65.5
Q ss_pred eeEEEeCCCCCEEEEE--cC----CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCC----
Q 010933 217 INSISNNSDCETFVSA--DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---- 286 (497)
Q Consensus 217 v~~~~~~~~~~~l~~~--~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---- 286 (497)
+...+++|+|++++.+ .. ..++++|+.+ ++.+.-. +.. .....+.|.+++ ..|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~------i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDG------IEN--PKFSSVSWSDDG-KGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEE------EEE--EESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCc------ccc--cccceEEEeCCC-CEEEEEEeCccccc
Confidence 3367889999999875 23 3699999994 4443310 111 112349999998 6555554332
Q ss_pred -------eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE-e---c-CeEEEEecCC
Q 010933 287 -------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-D---Y-MNLKLWDIRM 353 (497)
Q Consensus 287 -------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---~-~~i~lwd~~~ 353 (497)
.|+.|.+.+...- ...+++... .......+..++|+++|+.. . + ..+.+.++..
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~--d~lvfe~~~-----------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSE--DELVFEEPD-----------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG---EEEEC-TT-----------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred ccCCCCcEEEEEECCCChHh--CeeEEeecC-----------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3677777654321 113444410 01124578889999998764 2 2 4678888875
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.15 E-value=7.3 Score=41.35 Aligned_cols=103 Identities=10% Similarity=-0.013 Sum_probs=67.2
Q ss_pred CCeeEEEeCCCCCE-EEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933 215 FNINSISNNSDCET-FVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 215 ~~v~~~~~~~~~~~-l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 292 (497)
....++.|+|.-.. .+.+ .|+.|++..+....+... -.......++++|+|.| +.+++|-..|++.-|-
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~--------s~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT--------SFPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYE 226 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhc--------ccCcccceeeEEecccc-ceeeEecCCCeEEEee
Confidence 34567888885443 3445 899999887763333222 12355778999999999 9999999999999887
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
..-. .. +.+.. ..... ...|.+++|-....++++
T Consensus 227 P~le-ik----~~ip~-Pp~~e--------~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 227 PSLE-IK----SEIPE-PPVEE--------NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cccc-ee----ecccC-CCcCC--------CcceeEEEEecceeEEEE
Confidence 5432 11 11111 00000 256899999887777776
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.85 E-value=6.7 Score=33.31 Aligned_cols=128 Identities=14% Similarity=0.179 Sum_probs=71.0
Q ss_pred EEEEeeCCCEEEEEecCeEEEEecCC-CCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCC----
Q 010933 328 DIKFANDGQHLLSRDYMNLKLWDIRM-DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---- 402 (497)
Q Consensus 328 ~~~~s~~g~~l~~~~~~~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg---- 402 (497)
.+.-.+.+.++++.+.+.|.+|++.. ..+++.++..-.. +..+.++..|.||+|-=.+.
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~----------------V~~l~y~~~GDYlvTlE~k~~~~~ 85 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGR----------------VLQLVYSEAGDYLVTLEEKNKRSP 85 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhh----------------eeEEEeccccceEEEEEeecCCcc
Confidence 33333333444445558999999972 3455666654432 26899999999999866533
Q ss_pred --cEEEE---EcC--CCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCceecCCCCCcccccccCCCeEEE
Q 010933 403 --LLRIF---SHG--VGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQAHENSSSGHHELSYNLSSKLLHL 475 (497)
Q Consensus 403 --~i~vw---~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~~iw~~~~~~~~~~~~~~~i~~l 475 (497)
.+|+| +.. ........+-||.. ......+ . ..+....-...+.++.++
T Consensus 86 ~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v--~~~~~~~-----~------------------~~qleiiElPl~~~p~ci 140 (215)
T PF14761_consen 86 VDFVRAYFNWRSQKEENSPVRVRIAGHRV--TPSFNES-----S------------------KDQLEIIELPLSEPPLCI 140 (215)
T ss_pred ceEEEEEEEhhhhcccCCcEEEEEccccc--ccCCCCc-----c------------------ccceEEEEecCCCCCCEE
Confidence 44554 222 11122122223211 0000000 0 000111223346688899
Q ss_pred EEecCCCEEEEEeCCceEEEe
Q 010933 476 AWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 476 ~~~p~~~~la~~~~~~~~i~~ 496 (497)
+..|-..-|++|+.+.+.+|.
T Consensus 141 aCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 141 ACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EecCCCCCEEEEcCCEEEEEE
Confidence 999987778999999999885
No 431
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.76 E-value=20 Score=34.51 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=34.5
Q ss_pred cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEcc
Q 010933 233 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 294 (497)
Q Consensus 233 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 294 (497)
-||.+.+|+-+ .- .+... +.. ---.-.+.|.+.. ..|++++.+..+.-|...
T Consensus 153 ~DG~L~~feqe-~~-~f~~~------lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 153 MDGSLSFFEQE-SF-AFSRF------LPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cCceEEEEeCC-cE-EEEEE------cCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence 89999999976 22 22211 222 1122346788877 789999999889888764
No 432
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.29 E-value=12 Score=40.45 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=54.4
Q ss_pred CCCeeEEEeCCCCCEEEEEcCCeEEEEeCccC-----ceeeEEeecC--------C--CccC-CCCCCeEEEEEeCCCCc
Q 010933 214 DFNINSISNNSDCETFVSADDLRINLWNLEIS-----DQCFNIVDMK--------P--SNMD-DLTEVITSAEFHPIYCN 277 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~--------~--~~~~-~~~~~i~~~~~~~~~~~ 277 (497)
...|+++....+|+.+.+|.||.|+-.-.+.. .++.++ ++. | ..+. .+.++|..++.+... +
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Ki-clt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~ 255 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKI-CLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-N 255 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccc-cCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-c
Confidence 45788999889999999996664432222211 112111 100 0 1123 567899999999887 8
Q ss_pred EEEEEeCCCeEEEEEccC
Q 010933 278 LLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 278 ~l~~~~~dg~i~v~d~~~ 295 (497)
.+.+-+..+.|++||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 999999999999999987
No 433
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.10 E-value=28 Score=35.34 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=16.6
Q ss_pred cCCCCEEEEeecCC------eEEEEEecCC
Q 010933 41 DKTGDYLAVGDRGG------RVILFETVGG 64 (497)
Q Consensus 41 sp~g~~lasg~~dg------~i~iwd~~~~ 64 (497)
+..+.+++.|+.++ .+..+|..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~ 311 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTN 311 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcC
Confidence 44567778888763 6777887765
No 434
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.93 E-value=27 Score=35.86 Aligned_cols=71 Identities=13% Similarity=0.011 Sum_probs=42.8
Q ss_pred EEEEEeCCCCcEEEEEeCCC-----eEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE
Q 010933 267 TSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 341 (497)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 341 (497)
+.++|-|+| ..+++-..|| .+.++.-+.-+.- .+. .-.+.......++|+-....++.+
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHG-----ef~----------lr~~~dEk~~~~~wn~~s~vlav~ 313 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHG-----EFD----------LRVGCDEKAFLENWNLLSTVLAVA 313 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccC-----Ccc----------ccCCchhhhhhhhhhHHHHHHHHh
Confidence 457899999 8899877654 3444443221100 000 001112456777887777777777
Q ss_pred ecCeEEEEecCC
Q 010933 342 DYMNLKLWDIRM 353 (497)
Q Consensus 342 ~~~~i~lwd~~~ 353 (497)
..+.+++|-..+
T Consensus 314 ~~n~~~lwttkN 325 (1243)
T COG5290 314 EGNLLKLWTTKN 325 (1243)
T ss_pred hcceEEEEEccc
Confidence 779999998653
No 435
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.62 E-value=22 Score=33.55 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=78.4
Q ss_pred CeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEe--C-CCCcEEEEEeCCCeEEEEEcc---CCcccccccceecc
Q 010933 235 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--P-IYCNLLAYSSSRGFVRLVDMR---QSALCDHSARILRD 308 (497)
Q Consensus 235 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~ 308 (497)
..|++|.+......++.+.-....+......++.+++- | +|..+.++...+|.+..|-+. .+....+.++.|..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 47899987632222332110000011122346777763 3 353466667789988888775 23333334455554
Q ss_pred cccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCce----eeeeeecccccccccccCCCCCccce
Q 010933 309 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP----VATFKIHEHLRPKLCDLYNNDSIFDK 383 (497)
Q Consensus 309 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (497)
.+.+-.|.......+|+.+.+ .-|.-|+.+..... +....+ .... -++
T Consensus 207 --------------~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g-~~l~------------aDv 259 (381)
T PF02333_consen 207 --------------GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG-DGLV------------ADV 259 (381)
T ss_dssp --------------SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS-SSB-------------S-E
T ss_pred --------------CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccc-cccc------------cCc
Confidence 246888888888888988865 66777777642221 111111 1111 112
Q ss_pred eEEEE--cCCC-CEEEEEeC-CCcEEEEEcCCC
Q 010933 384 FECSV--SGDG-LHFATGSY-SNLLRIFSHGVG 412 (497)
Q Consensus 384 ~~~~~--s~~~-~~l~s~~~-dg~i~vw~~~~~ 412 (497)
-.+++ ..++ .||+..+. +++..||+.+..
T Consensus 260 EGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 260 EGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 24544 3444 35655554 778999998754
No 436
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.31 E-value=22 Score=33.13 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=63.0
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCe------EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCE
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGF------VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 337 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 337 (497)
+.+..+.+.+++ ..+++.+.+|. +..+++.................-.......+..-.-..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 556788898765 56777777777 65555544110000001111000000000001111113457788778887
Q ss_pred EEEEe-c------CeEEEEecCCCCceeeeeeecccccccc---cccCCCCCccceeEEEEcCCCCEEEEEeC
Q 010933 338 LLSRD-Y------MNLKLWDIRMDSTPVATFKIHEHLRPKL---CDLYNNDSIFDKFECSVSGDGLHFATGSY 400 (497)
Q Consensus 338 l~~~~-~------~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~s~~~ 400 (497)
+++.. + ..|+-++.. ++.+..+.......... .....+... -+++++|||+.|+++.+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~---E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGF---EGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCe---EEEEECCCCCEEEEEEC
Confidence 77753 3 456666653 66666553322211000 001111112 48999999997776665
No 437
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.26 E-value=10 Score=36.69 Aligned_cols=88 Identities=7% Similarity=0.101 Sum_probs=48.5
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC-Cc---ccccccceecccccccCCccccccccccccEEEEeeCC----
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SA---LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---- 335 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---- 335 (497)
-.|..+..++.| ..++..+.+|.+.++=.+. |+ ..+.. .+...........-+.....-.+..++|+|+.
T Consensus 104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk-~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGK-STVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCC-ceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 346778889999 8888888998766543211 10 00000 00111011111111111222356788999975
Q ss_pred CEEEEEecCeEEEEecCC
Q 010933 336 QHLLSRDYMNLKLWDIRM 353 (497)
Q Consensus 336 ~~l~~~~~~~i~lwd~~~ 353 (497)
.+++-.+|+.+|+||+..
T Consensus 182 hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eEEEEecCcEEEEEecCC
Confidence 455556789999999975
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.02 E-value=14 Score=35.62 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=56.2
Q ss_pred cEEE-EEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCC--------CEEEEEecCeEE
Q 010933 277 NLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG--------QHLLSRDYMNLK 347 (497)
Q Consensus 277 ~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--------~~l~~~~~~~i~ 347 (497)
++|+ .+.....++-.|+..|+.+ ..|..|. .+ -+.|.|.. +.|+.-++..|.
T Consensus 480 sli~~dg~~~~kLykmDIErGkvv----eeW~~~d--------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svF 540 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVV----EEWDLKD--------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVF 540 (776)
T ss_pred ceEEecCCCcccceeeecccceee----eEeecCC--------------cc-eeecCCchhHHhcCccceEEeecccceE
Confidence 4443 4555677888888888766 5555521 22 56666643 233333665555
Q ss_pred EEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 010933 348 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 348 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~ 410 (497)
-.|.+..+..+......... . ..- .+..-...+.|+|.+|..|-|++||.-
T Consensus 541 rIDPR~~gNKi~v~esKdY~-t--------Kn~---Fss~~tTesGyIa~as~kGDirLyDRi 591 (776)
T COG5167 541 RIDPRARGNKIKVVESKDYK-T--------KNK---FSSGMTTESGYIAAASRKGDIRLYDRI 591 (776)
T ss_pred EecccccCCceeeeeehhcc-c--------ccc---ccccccccCceEEEecCCCceeeehhh
Confidence 55665544333322211110 0 000 122222345699999999999999954
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.85 E-value=20 Score=32.29 Aligned_cols=57 Identities=5% Similarity=0.103 Sum_probs=42.2
Q ss_pred CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC------CCCEEEEEeCCCcEEEEEcCCCCcc
Q 010933 344 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 344 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
|.|-+||+. ++.++++......- .-+.++..| .+.+|+.--.||+|..||..+++.+
T Consensus 222 G~VdvFd~~--G~l~~r~as~g~LN-------------aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 222 GYVNVFTLN--GQLLRRVASSGRLN-------------APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred ceEEEEcCC--CcEEEEeccCCccc-------------CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 789999985 89999885433221 115788766 4677777777999999999988655
No 440
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.75 E-value=21 Score=32.42 Aligned_cols=154 Identities=13% Similarity=0.132 Sum_probs=85.2
Q ss_pred eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCC----cEEEEE-eCCCeEEEEEccCCcccccccceecccc
Q 010933 236 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC----NLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAA 310 (497)
Q Consensus 236 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~~ 310 (497)
.|.+||+. +.+.++.+.+++.... ..+.+..+.+..... .+++.+ +..+-|.|+|+.+++.. ++... .
T Consensus 35 KLv~~Dl~-t~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~-~ 107 (287)
T PF03022_consen 35 KLVAFDLK-TNQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHN-S 107 (287)
T ss_dssp EEEEEETT-TTCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETC-G
T ss_pred EEEEEECC-CCcEEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecC-C
Confidence 78888998 5567777776654444 556778888877321 233333 33468999999998654 33222 1
Q ss_pred cccCCc-ccc------ccccccccEEEEee---CCCEEEEEecCeEEEEecCCC----Cc---------eeeeeeecccc
Q 010933 311 ESHGSK-SFF------TEIIASISDIKFAN---DGQHLLSRDYMNLKLWDIRMD----ST---------PVATFKIHEHL 367 (497)
Q Consensus 311 ~~~~~~-~~~------~~~~~~i~~~~~s~---~g~~l~~~~~~~i~lwd~~~~----~~---------~~~~~~~~~~~ 367 (497)
..+.+. ..+ -.....+..++.+| +|++|....-..-++|.+.+. .. .++.+ +....
T Consensus 108 ~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~ 186 (287)
T PF03022_consen 108 FSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGS 186 (287)
T ss_dssp CTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---
T ss_pred cceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCC
Confidence 111111 000 01123477777766 677777765444445544320 10 01111 11110
Q ss_pred cccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 010933 368 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~ 411 (497)
. ...++.+++|.+.++--..+.|..|+...
T Consensus 187 ~--------------s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 Q--------------SDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp S--------------ECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred C--------------CceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 0 03789999999999999999999999876
No 441
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.64 E-value=3.7 Score=38.65 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=85.1
Q ss_pred cccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCcccee-EEEEcCCCCEEEEEeCC
Q 010933 323 IASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF-ECSVSGDGLHFATGSYS 401 (497)
Q Consensus 323 ~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l~s~~~d 401 (497)
...+..+-..|||+.+..-+..++.++++.+..-..+.+-.... ++....++ .+..-..|.-|..++.|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dsp----------g~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSP----------GDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCC----------CchHHHHHHHHHHHhCceeEEEEcCC
Confidence 35678888999999998877688999998742111221111100 00110011 12223356678889999
Q ss_pred CcEEEE-EcCCCCcceEEEeccCcceeeeE--------eecCCCcccccccceeEeeccCc-eec-CCCCCcccccccCC
Q 010933 402 NLLRIF-SHGVGSAGGITVEAGKNENRKPI--------LQAAPRARRSSLSNLTRGLYRQA-HEN-SSSGHHELSYNLSS 470 (497)
Q Consensus 402 g~i~vw-~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~l~~~~~d~~-~iw-~~~~~~~~~~~~~~ 470 (497)
|.|.-| |+..+... |-+.++... ..|+++.+. +++-...|. ..+ .+.+........-.
T Consensus 290 G~vsQWFdvr~~~~p------~l~h~R~f~l~pa~~~~l~pe~~rkg-----F~~l~~~G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 290 GLVSQWFDVRRDGQP------HLNHIRNFKLAPAEVQFLLPETNRKG-----FYSLYRNGTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CceeeeeeeecCCCC------cceeeeccccCcccceeeccccccce-----EEEEcCCCceeeeecccCcceehhhhhc
Confidence 998877 44433221 112222222 223323333 666666666 555 33333222223334
Q ss_pred CeEEEEEecCCCEEEEEeCCceEEEe
Q 010933 471 KLLHLAWHPTTNLIACANGNSLFFHY 496 (497)
Q Consensus 471 ~i~~l~~~p~~~~la~~~~~~~~i~~ 496 (497)
.+..+++||.+.+|++-..+++.++.
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 359 APQLVAMSPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred CcceeeeCcccchheeecCCceEEEE
Confidence 67789999999999998887777764
No 442
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.47 E-value=28 Score=33.39 Aligned_cols=113 Identities=10% Similarity=0.071 Sum_probs=67.7
Q ss_pred CCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCce-----eeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCe
Q 010933 213 HDFNINSISNNSDCETFVSADDLRINLWNLEISDQ-----CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF 287 (497)
Q Consensus 213 h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 287 (497)
....+..+.+.+++..++++.+|.+..-+ . .++ .+... ........+.++.+.+++ . ++.++..|.
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l~~S~-d-~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~ 349 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGLYVSK-G-TGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-E-AWAAGGSGI 349 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceEEEec-C-CCCcccccceeec-----ccCCCCcceEEEEEcCCC-c-EEEEECCCc
Confidence 34568889999999999888777765433 2 222 11110 011122458889999886 4 555667776
Q ss_pred EEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEE
Q 010933 288 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLW 349 (497)
Q Consensus 288 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lw 349 (497)
+.... ..|+ .|..... . ......++.+.|.++++.+++|.+|.|.-|
T Consensus 350 v~~s~-D~G~-------tW~~~~~-~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 350 LLRST-DGGK-------SWKRDKG-A------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EEEeC-CCCc-------ceeEccc-c------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 66543 3332 2221000 0 011246789999888999999988887654
No 443
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.41 E-value=18 Score=34.43 Aligned_cols=119 Identities=10% Similarity=0.198 Sum_probs=73.2
Q ss_pred cceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCcccccccccccC
Q 010933 110 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 189 (497)
Q Consensus 110 ~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (497)
++|.+++| ++|++.++.--.|++|.+++....+.+.....
T Consensus 67 G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~-------------------------------------- 106 (657)
T KOG2377|consen 67 GEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ-------------------------------------- 106 (657)
T ss_pred CceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHHH--------------------------------------
Confidence 88999999 78999999999999999998844332111000
Q ss_pred cceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEE
Q 010933 190 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 269 (497)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (497)
+| +.....|....|+.+. -++.-.+.-+-+|-+....+.+.. .+.|...|.-.
T Consensus 107 --------------~c-----k~k~~~IlGF~W~~s~-e~A~i~~~G~e~y~v~pekrslRl-------Vks~~~nvnWy 159 (657)
T KOG2377|consen 107 --------------EC-----KTKNANILGFCWTSST-EIAFITDQGIEFYQVLPEKRSLRL-------VKSHNLNVNWY 159 (657)
T ss_pred --------------Hh-----ccCcceeEEEEEecCe-eEEEEecCCeEEEEEchhhhhhhh-------hhhcccCccEE
Confidence 01 2334457788887663 444444555666665533444433 45677888888
Q ss_pred EEeCCCCcEEEEEe--CCCeEEEEEccCC
Q 010933 270 EFHPIYCNLLAYSS--SRGFVRLVDMRQS 296 (497)
Q Consensus 270 ~~~~~~~~~l~~~~--~dg~i~v~d~~~~ 296 (497)
.|.++. +.++.++ ..+.+.=+-++++
T Consensus 160 ~yc~et-~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 160 MYCPET-AVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEcccc-ceEeeeccccccccccEEEeec
Confidence 888887 5444333 3444444555544
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.04 E-value=17 Score=39.49 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=82.0
Q ss_pred cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEE--------eCCCCcEEEEEeCCCeEEEEEccCCcccccccc
Q 010933 233 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--------HPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 304 (497)
Q Consensus 233 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 304 (497)
.|+.+.+|+.+.++.... +.+.+..|..+.. -|.= +++++...--.|.++-+.-.+..... .
T Consensus 97 iDn~L~lWny~~~~e~~~--------~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~ilgV~~~~~~~~~-~ 166 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAE--------YDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIVILGVSFDEFTGEL-S 166 (1311)
T ss_pred eCCeEEEEEcCCCCcccc--------ccchhhhheeeeeecCCCCcchhhh-heeEEecccceEEEEEEEeccccCcc-c
Confidence 588999999995444322 3445555555543 2222 23333344445555544322211100 1
Q ss_pred eecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecC----CC--Cc-eeeeeee---ccccccccccc
Q 010933 305 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIR----MD--ST-PVATFKI---HEHLRPKLCDL 374 (497)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~----~~--~~-~~~~~~~---~~~~~~~~~~~ 374 (497)
.+..+ ..+......|+++....+|+.+++|.||. +|.+. .+ ++ +.+.-.. -...++.+...
T Consensus 167 ~f~~~-------~~i~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 167 IFNTS-------FKISVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred ccccc-------eeeecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence 11110 00011124688899888999999998874 44432 11 00 1000000 00011111111
Q ss_pred CCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 375 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 375 ~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
. ....-+|..++.....+.|.+-++.|.|.+|++...
T Consensus 238 ~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 238 P-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred C-CCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 1 011112368999888889999999999999999873
No 445
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.69 E-value=13 Score=28.89 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=49.8
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccceeEE
Q 010933 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRV 115 (497)
Q Consensus 36 ~~i~~sp~g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~i~~l 115 (497)
..-.|.....-|++++..|+|.|++...... ...+ .-..++.+.+...|++|
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~--------------------------~~~~--~~~~i~~LNin~~ital 53 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQ--------------------------RTGR--QDSDISFLNINQEITAL 53 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCcccc--------------------------cccc--ccCceeEEECCCceEEE
Confidence 3456777777899999999999999765432 0000 01124445555778888
Q ss_pred EEEe---cCCCCEEEEEeCCccEEEeecCchh
Q 010933 116 RWCA---APNGSMFILSTNDKTIKLWKVRDQK 144 (497)
Q Consensus 116 ~~~~---s~~~~~l~s~s~d~~i~iw~~~~~~ 144 (497)
+--+ +.+...|+.|+. ..+..||++...
T Consensus 54 aaG~l~~~~~~D~LliGt~-t~llaYDV~~N~ 84 (136)
T PF14781_consen 54 AAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS 84 (136)
T ss_pred EEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence 6543 223445555554 579999998755
No 446
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.91 E-value=7.9 Score=32.08 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=24.7
Q ss_pred eeEEEEcCCC------CEEEEEeCCCcEEEEEcCCC
Q 010933 383 KFECSVSGDG------LHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 383 ~~~~~~s~~~------~~l~s~~~dg~i~vw~~~~~ 412 (497)
+..++|||.| .+||+.+.+|.|.||.-...
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 4799999953 47889999999999997643
No 447
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.41 E-value=9 Score=36.66 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecc
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 308 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 308 (497)
...+.+++.+|++ .+.|+...=|+|.++|+.++..+ +.|++
T Consensus 307 ~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vv----rmWKG 347 (415)
T PF14655_consen 307 KREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVV----RMWKG 347 (415)
T ss_pred CceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhh----hhhcc
Confidence 3457889999998 88888877899999999998766 66665
No 448
>PHA03098 kelch-like protein; Provisional
Probab=85.25 E-value=44 Score=33.65 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=13.6
Q ss_pred cEEEEEeCC--------CeEEEEEccCCc
Q 010933 277 NLLAYSSSR--------GFVRLVDMRQSA 297 (497)
Q Consensus 277 ~~l~~~~~d--------g~i~v~d~~~~~ 297 (497)
.+++.|+.+ ..+.+||..+.+
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCCc
Confidence 666777643 237888887654
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=85.22 E-value=33 Score=32.09 Aligned_cols=112 Identities=16% Similarity=0.117 Sum_probs=58.9
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe
Q 010933 263 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 342 (497)
Q Consensus 263 ~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 342 (497)
...+..+.+.|++ .+++ .+..|.+..- .+.+. +.|..+.. .-...++++.+.++++.++++.
T Consensus 172 ~g~~~~i~~~~~g-~~v~-~g~~G~i~~s-~~~gg------~tW~~~~~---------~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVA-VSSRGNFYST-WEPGQ------TAWTPHQR---------NSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred cceEEEEEECCCC-eEEE-EeCCceEEEE-cCCCC------CeEEEeeC---------CCcccceeeeEcCCCCEEEEec
Confidence 4578899999987 5554 4555654432 11111 11221100 0125689999999999988887
Q ss_pred cCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEE
Q 010933 343 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLR 405 (497)
Q Consensus 343 ~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~ 405 (497)
.|.+++=... ++..-.....+... .-+.+..+.+.+++..++ ++.+|.+.
T Consensus 234 ~G~~~~~s~d-~G~sW~~~~~~~~~-----------~~~~l~~v~~~~~~~~~~-~G~~G~v~ 283 (334)
T PRK13684 234 GGQIRFNDPD-DLESWSKPIIPEIT-----------NGYGYLDLAYRTPGEIWA-GGGNGTLL 283 (334)
T ss_pred CCEEEEccCC-CCCccccccCCccc-----------cccceeeEEEcCCCCEEE-EcCCCeEE
Confidence 7776532222 23322221111000 001125788998877555 44566554
No 450
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.88 E-value=5 Score=23.58 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=24.5
Q ss_pred eCCCEEEEEe--cCeEEEEecCCCCceeeeeeecccc
Q 010933 333 NDGQHLLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 367 (497)
Q Consensus 333 ~~g~~l~~~~--~~~i~lwd~~~~~~~~~~~~~~~~~ 367 (497)
|++++|+++. ++.|.++|..+ ++.+..+.....+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg~~P 36 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVGGYP 36 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECCCCC
Confidence 5777777763 39999999976 7777777664443
No 451
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.88 E-value=0.14 Score=48.16 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=86.1
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEE--e
Q 010933 265 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--D 342 (497)
Q Consensus 265 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~ 342 (497)
......|-|.+ .-++.++.+..+..||-.. +.. .+. ...+....|+|+-+|..++.. .
T Consensus 36 ~pi~~~w~~e~-~nlavaca~tiv~~YD~ag-q~~------le~------------n~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 36 GPIIHRWRPEG-HNLAVACANTIVIYYDKAG-QVI------LEL------------NPTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred ccceeeEecCC-CceehhhhhhHHHhhhhhc-cee------ccc------------CCchhHhhhhhccccchhhhhhhc
Confidence 33455788888 6688888888899998543 222 111 012456778888888766653 3
Q ss_pred cCeEEEEecCCCCceeeeee--ecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 010933 343 YMNLKLWDIRMDSTPVATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 420 (497)
Q Consensus 343 ~~~i~lwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 420 (497)
.+.+.+||+.+. .-+++. +.... .=+.|++....++.|...|.+.|++..+.+.. ....
T Consensus 96 ~~piylwd~n~e--ytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~G 156 (615)
T KOG2247|consen 96 TGPIYLWDVNSE--YTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMG 156 (615)
T ss_pred CCCeeechhhhh--hHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccchhhh-hhhc
Confidence 499999999752 222222 21111 12789999999999999999999998876443 3344
Q ss_pred ccCcceeeeEeecC
Q 010933 421 AGKNENRKPILQAA 434 (497)
Q Consensus 421 ~~~~~v~~~~~~~~ 434 (497)
.|...+.+.++.+.
T Consensus 157 kh~RRgtq~av~lE 170 (615)
T KOG2247|consen 157 KHQRRGTQIAVTLE 170 (615)
T ss_pred ccccceeEEEeccc
Confidence 46666777777663
No 452
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.26 E-value=6.2 Score=37.28 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=59.1
Q ss_pred CCCEEEEE-cCCeEEEE-eCccCcee-eEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccc
Q 010933 225 DCETFVSA-DDLRINLW-NLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 301 (497)
Q Consensus 225 ~~~~l~~~-~d~~i~iw-d~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 301 (497)
.|..+..+ .||.|.-| |++.+++. ...+ + .+.-....+..+.-..+. +-+++-+..|++.++.....+...
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~--R--~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~lL- 352 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHI--R--NFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLLL- 352 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceee--e--ccccCcccceeecccccc-ceEEEEcCCCceeeeecccCccee-
Confidence 45556666 77777666 55533321 1110 0 011111222222222222 557777778888877655433221
Q ss_pred ccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCC
Q 010933 302 SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 353 (497)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~ 353 (497)
++. -...+.-+++||++.++++-+.|.++++.+++
T Consensus 353 ----~~~-------------~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 353 ----FER-------------AYQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ----hhh-------------hhcCcceeeeCcccchheeecCCceEEEEecC
Confidence 111 01346778999999999987779999999976
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.04 E-value=41 Score=32.25 Aligned_cols=155 Identities=8% Similarity=0.011 Sum_probs=80.9
Q ss_pred eeEEEeCCCCCEEEEEcCCeEE-EEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 217 INSISNNSDCETFVSADDLRIN-LWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 217 v~~~~~~~~~~~l~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
...+..+++|..++.+..|.+. -||-. ....+.+ -......+.++.+.+++ .++++ +.+|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~------~~~~~~~l~~v~~~~dg-~l~l~-g~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH------NRASARRIQNMGWRADG-GLWLL-TRGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe------cCCCccceeeeeEcCCC-CEEEE-eCCceEEE-ecCC
Confidence 4455667888888888555444 34422 2111221 11234567899999988 66554 46666543 2223
Q ss_pred CcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccC
Q 010933 296 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 375 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (497)
++.-. ...+..... ..-...+..+.|.+++..+++|..|.+....- +++.-........ ++
T Consensus 310 G~~~~--~~~f~~~~~--------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~-~~------ 370 (398)
T PLN00033 310 GLTEE--DFDFEEADI--------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADN-IA------ 370 (398)
T ss_pred CCccc--ccceeeccc--------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCC-CC------
Confidence 21100 001111000 00013488899999999999998887666542 2443333221111 00
Q ss_pred CCCCccceeEEEEcCCCCEEEEEeCCCcEEEE
Q 010933 376 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIF 407 (497)
Q Consensus 376 ~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw 407 (497)
.. .+.+.|.++++.++ .+.+|.|.-|
T Consensus 371 --~~---ly~v~f~~~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 371 --AN---LYSVKFFDDKKGFV-LGNDGVLLRY 396 (398)
T ss_pred --cc---eeEEEEcCCCceEE-EeCCcEEEEe
Confidence 01 15889877766554 5556776554
No 454
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=83.55 E-value=54 Score=33.29 Aligned_cols=24 Identities=8% Similarity=0.306 Sum_probs=17.0
Q ss_pred CCCEEEEEeCCCc-----EEEEEcCCCCc
Q 010933 391 DGLHFATGSYSNL-----LRIFSHGVGSA 414 (497)
Q Consensus 391 ~~~~l~s~~~dg~-----i~vw~~~~~~~ 414 (497)
++...+.||.|+. |..||..+.+-
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCce
Confidence 6677788887763 67788776543
No 455
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.54 E-value=41 Score=34.64 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=25.2
Q ss_pred CcceEEEEEcCCCCEEEEeecCCeEEEEEec
Q 010933 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV 62 (497)
Q Consensus 32 ~~~I~~i~~sp~g~~lasg~~dg~i~iwd~~ 62 (497)
.+.|-+..||.|.+.++....+..|.+++..
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~ 142 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDKY 142 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEecc
Confidence 4688899999999977777777889888753
No 456
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.53 E-value=3 Score=24.25 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=20.0
Q ss_pred CCcceEEEEEcCCCCEEEEeec-C--CeEEEE
Q 010933 31 DVDIVSAIEFDKTGDYLAVGDR-G--GRVILF 59 (497)
Q Consensus 31 h~~~I~~i~~sp~g~~lasg~~-d--g~i~iw 59 (497)
....-.+..|||||++|+-.+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456788999999999887664 3 555554
No 457
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.05 E-value=4.6 Score=23.43 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=15.5
Q ss_pred CCCeEEEEEecCCCEEEEEe
Q 010933 469 SSKLLHLAWHPTTNLIACAN 488 (497)
Q Consensus 469 ~~~i~~l~~~p~~~~la~~~ 488 (497)
.......+|+|||+.|+.++
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEE
T ss_pred CccccCEEEecCCCEEEEEe
Confidence 34567889999999999877
No 458
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.52 E-value=11 Score=31.21 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=26.2
Q ss_pred CeEEEEEeCCC-----CcEEEEEeCCCeEEEEEccCC
Q 010933 265 VITSAEFHPIY-----CNLLAYSSSRGFVRLVDMRQS 296 (497)
Q Consensus 265 ~i~~~~~~~~~-----~~~l~~~~~dg~i~v~d~~~~ 296 (497)
.+..++|+|.| .-+|++.+.++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 78899999964 247899999999999987643
No 459
>PHA03098 kelch-like protein; Provisional
Probab=81.63 E-value=62 Score=32.61 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=15.5
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCC
Q 010933 391 DGLHFATGSYS-----NLLRIFSHGVG 412 (497)
Q Consensus 391 ~~~~l~s~~~d-----g~i~vw~~~~~ 412 (497)
+++.++.||.+ +.+.+||..+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 67777777764 46788887765
No 460
>PRK10115 protease 2; Provisional
Probab=81.25 E-value=74 Score=33.25 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=24.8
Q ss_pred cceEEEEEcCCCCEEEEee-----cCCeEEEEEecCCc
Q 010933 33 DIVSAIEFDKTGDYLAVGD-----RGGRVILFETVGGK 65 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~-----~dg~i~iwd~~~~~ 65 (497)
-.+..+.+||||++||.+. +...|++-|+.+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC
Confidence 4577889999999998754 23468888887764
No 461
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.82 E-value=0.3 Score=46.09 Aligned_cols=100 Identities=9% Similarity=0.101 Sum_probs=65.3
Q ss_pred CCeeEEEeCCCCCEEEE-E-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 010933 215 FNINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 292 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 292 (497)
.....++|..++..++. + ..+.+.+||+.+ ....+. + .-..+.... +.|++.+ ..++.+...|.+.+++
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~-eytqqL-E----~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viyn 145 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS-EYTQQL-E----SGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYN 145 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhh-hhHHHH-h----ccCcchHHH--HhhccCC-ccccccccccceEEEe
Confidence 34556778777777765 5 899999999983 322221 0 011122222 6789888 8888898999999999
Q ss_pred ccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEE
Q 010933 293 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 340 (497)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 340 (497)
..+.+.. -... .|...++++++.+.+..+..
T Consensus 146 hgtsR~i----iv~G-------------kh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 146 HGTSRRI----IVMG-------------KHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred ccchhhh----hhhc-------------ccccceeEEEecccceeeec
Confidence 8876543 1111 14467888888887755544
No 462
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=80.75 E-value=41 Score=29.92 Aligned_cols=144 Identities=6% Similarity=-0.022 Sum_probs=71.6
Q ss_pred EEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCccccccccee
Q 010933 228 TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL 306 (497)
Q Consensus 228 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 306 (497)
...-. .++...+||.. .-+....+. .. ..=..++ .++ ..|+.......|+++|..+.+.. +.+
T Consensus 102 l~qLTWk~~~~f~yd~~-tl~~~~~~~-----y~---~EGWGLt--~dg-~~Li~SDGS~~L~~~dP~~f~~~----~~i 165 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPN-TLKKIGTFP-----YP---GEGWGLT--SDG-KRLIMSDGSSRLYFLDPETFKEV----RTI 165 (264)
T ss_dssp EEEEESSSSEEEEEETT-TTEEEEEEE------S---SS--EEE--ECS-SCEEEE-SSSEEEEE-TTT-SEE----EEE
T ss_pred EEEEEecCCeEEEEccc-cceEEEEEe-----cC---CcceEEE--cCC-CEEEEECCccceEEECCcccceE----EEE
Confidence 33445 78899999998 444444432 21 2235555 445 55666666778999998876543 222
Q ss_pred cccccccCCccccccccccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeeeeecccccccccc--cCCCCCccce
Q 010933 307 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD--LYNNDSIFDK 383 (497)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 383 (497)
.... .. .....++-+.+- +|...|-- ....|...|..+ ++....+....-....-.. ....+.+ .
T Consensus 166 ~V~~-~g-------~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dV--L 233 (264)
T PF05096_consen 166 QVTD-NG-------RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDV--L 233 (264)
T ss_dssp E-EE-TT-------EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS---E
T ss_pred EEEE-CC-------EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCe--e
Confidence 2200 00 011346667775 56544443 237888888886 7777766432211000000 0001122 2
Q ss_pred eEEEEcCCCCEEEEEe
Q 010933 384 FECSVSGDGLHFATGS 399 (497)
Q Consensus 384 ~~~~~s~~~~~l~s~~ 399 (497)
+.+++.|..+.|...|
T Consensus 234 NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EeEeEeCCCCEEEEEe
Confidence 7999998766555444
No 463
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.92 E-value=47 Score=30.12 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=23.5
Q ss_pred EEEEEcCCCCEEEEeecCCeEEEEEec
Q 010933 36 SAIEFDKTGDYLAVGDRGGRVILFETV 62 (497)
Q Consensus 36 ~~i~~sp~g~~lasg~~dg~i~iwd~~ 62 (497)
+-|+|+|.+.+-++....+...+||..
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCC
Confidence 679999999888887778899999986
No 464
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=79.62 E-value=88 Score=33.07 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=19.9
Q ss_pred EEEEEeCCCcEEEEEcCCCCcc
Q 010933 394 HFATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 394 ~l~s~~~dg~i~vw~~~~~~~~ 415 (497)
.++.++.+|.++++|.++++.+
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEE
Confidence 7899999999999999998665
No 465
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.00 E-value=6.6 Score=20.82 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEE
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd 60 (497)
+.|.+++.++. ++|.+...+.+|||.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 46888888764 889998889999973
No 466
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.12 E-value=48 Score=28.71 Aligned_cols=99 Identities=5% Similarity=0.068 Sum_probs=63.4
Q ss_pred ccccEEEEeeCCCEEEEEe--cCeEEEEe--cCCC----CceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEE
Q 010933 324 ASISDIKFANDGQHLLSRD--YMNLKLWD--IRMD----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 395 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~~--~~~i~lwd--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 395 (497)
.--+.++|+.+.+.+..-+ +-+|.-|| ..++ .+.+..++.....-. .+- -.++...+|.+.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~---------~~P--DGm~ID~eG~L~ 226 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES---------LEP--DGMTIDTEGNLY 226 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC---------CCC--CcceEccCCcEE
Confidence 3457789998887776653 36776677 4331 122222222111000 000 256777788888
Q ss_pred EEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecC
Q 010933 396 ATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 434 (497)
Q Consensus 396 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 434 (497)
++.-..++|...|..+|+.+ .+++-....+.+.+|.-.
T Consensus 227 Va~~ng~~V~~~dp~tGK~L-~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKIL-LEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEecCcEEEEECCCCCcEE-EEEEcCCCceEEEEecCC
Confidence 88888999999999999555 677777888999998764
No 467
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.82 E-value=36 Score=26.58 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=63.9
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEccCCcccc----cccceecccccccCCccccccccccccEEEEee-----CCCEEE
Q 010933 269 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD----HSARILRDAAESHGSKSFFTEIIASISDIKFAN-----DGQHLL 339 (497)
Q Consensus 269 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~g~~l~ 339 (497)
-.|+... ..|+.++.-|+|.|++........ ..+..+.- ...|++++-.+ +...|+
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--------------n~~italaaG~l~~~~~~D~Ll 68 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--------------NQEITALAAGRLKPDDGRDCLL 68 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEEC--------------CCceEEEEEEecCCCCCcCEEE
Confidence 3566666 578888899999999876543211 11122221 24566665544 346788
Q ss_pred EEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEc---CCCCEEEEEeCCCcEEEEEcC
Q 010933 340 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYSNLLRIFSHG 410 (497)
Q Consensus 340 ~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~s~~~dg~i~vw~~~ 410 (497)
.|+...+..||+.. ...+.....+.+. .++.+- ....-|+..+.+..|.-||.+
T Consensus 69 iGt~t~llaYDV~~-N~d~Fyke~~DGv----------------n~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 69 IGTQTSLLAYDVEN-NSDLFYKEVPDGV----------------NAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred EeccceEEEEEccc-CchhhhhhCccce----------------eEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 89989999999986 4444433333332 234432 222334444445677777754
No 468
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=75.34 E-value=81 Score=30.45 Aligned_cols=57 Identities=12% Similarity=0.243 Sum_probs=37.0
Q ss_pred cEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEe-cCeEEEEec
Q 010933 277 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDI 351 (497)
Q Consensus 277 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~lwd~ 351 (497)
.++.+-+.||.+.+|+-+.-... ..+.. .--.-.+.|.+.-..+++++ ...+.-|..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~----~~lp~--------------~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFS----RFLPD--------------FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEE----EEcCC--------------CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 67888999999999998764321 12211 01123467777777777764 478887765
No 469
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.25 E-value=17 Score=36.72 Aligned_cols=75 Identities=11% Similarity=0.040 Sum_probs=41.0
Q ss_pred CCCCEEEEE-cCCeEEEEeCcc---CceeeEEeecCCC----cc-----------CCCCCCeEEEEEeC----CCCcEEE
Q 010933 224 SDCETFVSA-DDLRINLWNLEI---SDQCFNIVDMKPS----NM-----------DDLTEVITSAEFHP----IYCNLLA 280 (497)
Q Consensus 224 ~~~~~l~~~-~d~~i~iwd~~~---~~~~~~~~~~~~~----~~-----------~~~~~~i~~~~~~~----~~~~~l~ 280 (497)
++...++.+ .||.+....... .+........... .+ .........+++++ +. .+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-TFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-TEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-CEEE
Confidence 466677777 888888877663 2222221111100 00 01123455566665 44 7999
Q ss_pred EEeCCCeEEEEEccCCccc
Q 010933 281 YSSSRGFVRLVDMRQSALC 299 (497)
Q Consensus 281 ~~~~dg~i~v~d~~~~~~~ 299 (497)
+.+.|+.+|+||+.+++.+
T Consensus 235 tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EEETTSEEEEEETTTTCEE
T ss_pred EEeCCCeEEEEECCCCeEE
Confidence 9999999999999998763
No 470
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=71.65 E-value=99 Score=30.05 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=25.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 383 KFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 383 ~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
+.+++..+..+.|++.+.+|.|.+|++..+
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 368999999999999999999999999863
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.36 E-value=69 Score=27.44 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=22.6
Q ss_pred CCCeeEEEeCCCCCEEEEEcCCeEEEEeCc
Q 010933 214 DFNINSISNNSDCETFVSADDLRINLWNLE 243 (497)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~ 243 (497)
..++.+++..|....|+.|.++.+.+|.+.
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~ 163 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCGNKLVLFTLK 163 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcCCEEEEEEEE
Confidence 556778888885556667767889999876
No 472
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.15 E-value=19 Score=36.42 Aligned_cols=40 Identities=8% Similarity=0.252 Sum_probs=27.3
Q ss_pred cceeEEEEEe--cCCCCEEEEEeCCccEEEeecCchheeccc
Q 010933 110 EKINRVRWCA--APNGSMFILSTNDKTIKLWKVRDQKVKKIK 149 (497)
Q Consensus 110 ~~i~~l~~~~--s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~ 149 (497)
..+..++..+ -.+..++++.+.|+++|+||+.++++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3344455531 125678999999999999999999875543
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=69.79 E-value=1.6e+02 Score=31.39 Aligned_cols=192 Identities=13% Similarity=0.102 Sum_probs=104.3
Q ss_pred CCcceEEEEEc---C----CCCEEEEeecCCeEEEEEecCCcc-ccchhhhhhhcccCCCCCCcccccccccccCccccc
Q 010933 31 DVDIVSAIEFD---K----TGDYLAVGDRGGRVILFETVGGKN-HISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 102 (497)
Q Consensus 31 h~~~I~~i~~s---p----~g~~lasg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 102 (497)
-..+|..|.|. . ..++|++= ....+.|+...-.+. .... ...+.-....+.++..++-
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~---------~~~s~i~~~~l~~i~~~~t---- 143 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIR---------SRPSRIDPNPLLTISSSDT---- 143 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEccccccccccc---------CCccccccceeEEechhhc----
Confidence 46799999998 3 22466554 456788887432211 0000 0000112233333332220
Q ss_pred ccccccccceeEEEEEecCCCCEEEEEeCCccEEEeecCchheeccccCCCCCccccccccccccCccccCCCCCccccc
Q 010933 103 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 182 (497)
Q Consensus 103 ~~~~~~~~~i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (497)
-..+..+++|+| .+.+.||.....|...||++...............
T Consensus 144 -----gg~~~aDv~FnP-~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~--------------------------- 190 (765)
T PF10214_consen 144 -----GGFPHADVAFNP-WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR--------------------------- 190 (765)
T ss_pred -----CCCccceEEecc-CccceEEEEeccCcEEEEEeccccccCCcceeecc---------------------------
Confidence 014578899976 34558999999999999999322211100000000
Q ss_pred ccccccCcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEEcCCeEEEEeCccCceeeE-EeecCCCccCC
Q 010933 183 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFN-IVDMKPSNMDD 261 (497)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~ 261 (497)
.. .|.+ +.|. ...+.-..+.|.++-..|+.+....+.++|++. ..... ++ ...
T Consensus 191 --~~--~gsi-~~d~--------------~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~-~~~~~~l~------~~~ 244 (765)
T PF10214_consen 191 --NI--SGSI-IFDP--------------EELSNWKRILWVSDSNRLLVCNRSKLMLIDFES-NWQTEYLV------TAK 244 (765)
T ss_pred --CC--Cccc-cCCC--------------cccCcceeeEecCCCCEEEEEcCCceEEEECCC-CCccchhc------cCC
Confidence 00 0111 0111 112344578898888889999888899999984 33322 21 334
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCC
Q 010933 262 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS 296 (497)
Q Consensus 262 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 296 (497)
....|..+.-+|..+.+++.-+ ...|...|+...
T Consensus 245 ~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 245 TWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred ChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 5578899998888433333332 357888888763
No 474
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=69.44 E-value=14 Score=19.66 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCEEEEeecCCeEEEE
Q 010933 35 VSAIEFDKTGDYLAVGDRGGRVILF 59 (497)
Q Consensus 35 I~~i~~sp~g~~lasg~~dg~i~iw 59 (497)
...++++++|+++++=+....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3567777888877776666666654
No 475
>PHA02790 Kelch-like protein; Provisional
Probab=68.57 E-value=1.3e+02 Score=29.89 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=14.7
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCC
Q 010933 391 DGLHFATGSYS-----NLLRIFSHGVG 412 (497)
Q Consensus 391 ~~~~l~s~~~d-----g~i~vw~~~~~ 412 (497)
+++..+.||.+ ..+..||..++
T Consensus 446 ~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 446 DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCEEEEECCcCCCcccceEEEEECCCC
Confidence 67777777754 34667777654
No 476
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=67.75 E-value=91 Score=27.86 Aligned_cols=158 Identities=10% Similarity=0.016 Sum_probs=92.4
Q ss_pred CCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc
Q 010933 215 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 293 (497)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~ 293 (497)
..-..++-.|||..-.++ ..+.|--.|.. +++.... -.+.....+.+...|+| ..-++-+.. -|.-.|-
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~-tGev~~y-------pLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dp 131 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPA-TGEVETY-------PLGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDP 131 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCC-CCceEEE-------ecCCCCCCceEEECCCC-CeeEecCcc-eeEEecC
Confidence 345567888999888888 77888777877 3433322 22344556788889998 444432222 5555666
Q ss_pred cCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccc
Q 010933 294 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 373 (497)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (497)
++.+. +.|....+ .-........|.+.|++-+++..|.---.|. ....+..+....+.-+
T Consensus 132 kt~ev-----t~f~lp~~---------~a~~nlet~vfD~~G~lWFt~q~G~yGrLdP--a~~~i~vfpaPqG~gp---- 191 (353)
T COG4257 132 KTLEV-----TRFPLPLE---------HADANLETAVFDPWGNLWFTGQIGAYGRLDP--ARNVISVFPAPQGGGP---- 191 (353)
T ss_pred cccce-----EEeecccc---------cCCCcccceeeCCCccEEEeeccccceecCc--ccCceeeeccCCCCCC----
Confidence 55443 22222000 0125688899999999988874321111111 1233444433332211
Q ss_pred cCCCCCccceeEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 010933 374 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 412 (497)
Q Consensus 374 ~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~i~vw~~~~~ 412 (497)
+.++..|||...++.-.++.|-.-|..++
T Consensus 192 ----------yGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 192 ----------YGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred ----------cceEECCCCcEEEEeccccceEEcccccC
Confidence 47888999988887777777777776655
No 477
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=67.33 E-value=38 Score=24.13 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=23.2
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEEcCC
Q 010933 384 FECSVSGDGLHFATGSY-SNLLRIFSHGV 411 (497)
Q Consensus 384 ~~~~~s~~~~~l~s~~~-dg~i~vw~~~~ 411 (497)
..+.++|++++|..++. .+.|++|+...
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 58999999999887765 78999998753
No 478
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.24 E-value=1.1e+02 Score=33.65 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=27.6
Q ss_pred cceEEEEEcCCCCEEEEeecCCeEEEEEecCC
Q 010933 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (497)
Q Consensus 33 ~~I~~i~~sp~g~~lasg~~dg~i~iwd~~~~ 64 (497)
.....++|+|.-.++|.|..+|.|+++-....
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccce
Confidence 45678999999999999999999999976543
No 479
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=66.72 E-value=17 Score=26.13 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=27.7
Q ss_pred EeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEEEEec
Q 010933 282 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 343 (497)
Q Consensus 282 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 343 (497)
+..+|.+.-||..+++.. ..+.+ -.-.+.+++++|+.+++.+.-
T Consensus 33 ~~~~GRll~ydp~t~~~~----vl~~~--------------L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETT----VLLDG--------------LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEE----EEEEE--------------ESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEE----EehhC--------------CCccCeEEEcCCCCEEEEEec
Confidence 344678888998887642 22222 134688999999999988854
No 480
>PRK10115 protease 2; Provisional
Probab=65.22 E-value=1.8e+02 Score=30.44 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=62.3
Q ss_pred CeeEEEeCCCCCEEEEE-c-----CCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCC----
Q 010933 216 NINSISNNSDCETFVSA-D-----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---- 285 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---- 285 (497)
.+..+.++|+|++|+.+ + ...|++.|+. ++..+.. .+.+ .-..++|.+++ ..|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l~~------~i~~---~~~~~~w~~D~-~~~~y~~~~~~~~ 196 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE-TGNWYPE------LLDN---VEPSFVWANDS-WTFYYVRKHPVTL 196 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC-CCCCCCc------cccC---cceEEEEeeCC-CEEEEEEecCCCC
Confidence 45678899999999886 2 2367788887 3332111 1111 11568999998 655555432
Q ss_pred --CeEEEEEccCCcccccccceecccccccCCcccccccccccc-EEEEeeCCCEEEEE--e--cCeEEEEecC
Q 010933 286 --GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-DIKFANDGQHLLSR--D--YMNLKLWDIR 352 (497)
Q Consensus 286 --g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~g~~l~~~--~--~~~i~lwd~~ 352 (497)
..|+.+++.++.... ..+++. . ..... .+..+.++++++.. + ++.+.+++..
T Consensus 197 ~~~~v~~h~lgt~~~~d--~lv~~e-~------------~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 197 LPYQVWRHTIGTPASQD--ELVYEE-K------------DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCEEEEEECCCChhHC--eEEEee-C------------CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 357777777662111 133433 1 01122 23334478876653 1 2788999853
No 481
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=65.05 E-value=24 Score=32.29 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=53.8
Q ss_pred cccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCCCCEEEEEeCCCc
Q 010933 325 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 403 (497)
Q Consensus 325 ~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~~~dg~ 403 (497)
-+++|...++|.+|+++.. ..|.+.|-++ ++.+..+.+....-..+ .-..++|-.|-+++-.+..++.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t-G~I~W~lgG~~~~df~~----------~~~~f~~QHdar~~~~~~~~~~ 213 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPST-GKIIWRLGGKRNSDFTL----------PATNFSWQHDARFLNESNDDGT 213 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCC-CcEEEEeCCCCCCcccc----------cCCcEeeccCCEEeccCCCCCE
Confidence 4788888899999999866 9999999876 88888887662211000 0024666667777767788899
Q ss_pred EEEEEc
Q 010933 404 LRIFSH 409 (497)
Q Consensus 404 i~vw~~ 409 (497)
|.|+|=
T Consensus 214 IslFDN 219 (299)
T PF14269_consen 214 ISLFDN 219 (299)
T ss_pred EEEEcC
Confidence 999986
No 482
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.77 E-value=86 Score=33.09 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=51.5
Q ss_pred cccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcC----------CC-
Q 010933 325 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG----------DG- 392 (497)
Q Consensus 325 ~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------~~- 392 (497)
.-..++.+|+|++.|..++ |+|.+.|+.. ...++.++|.... ++.|-+ ..
T Consensus 323 ~ge~lslSP~gtlAAVTD~lgRVlLlDta~-~ivvr~wKGYRDA-----------------sc~fv~vkek~~~s~~~~s 384 (1244)
T KOG2727|consen 323 KGEKLSLSPSGTLAAVTDSLGRVLLLDTAA-LIVVRLWKGYRDA-----------------SCVFVEVKEKKGKSEPVKS 384 (1244)
T ss_pred ccceeeeCCCccEEEEecccCcEEEEehhh-hhHHHHhcccccc-----------------eeEEEEcccccCCCccCcC
Confidence 3457889999999888877 9999999986 7777888887764 344443 11
Q ss_pred ---CE-EEEEeCCCcEEEEEcCCCCcc
Q 010933 393 ---LH-FATGSYSNLLRIFSHGVGSAG 415 (497)
Q Consensus 393 ---~~-l~s~~~dg~i~vw~~~~~~~~ 415 (497)
.+ .+-+=.-|.+-||.+.+|-.+
T Consensus 385 RvAlFLvIyAPRrgiLEVW~~q~gpRV 411 (1244)
T KOG2727|consen 385 RVALFLVIYAPRRGILEVWQMQTGPRV 411 (1244)
T ss_pred ceeEEEEEecccccHHHHHHhccCCeE
Confidence 12 234556778888998887443
No 483
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=60.55 E-value=42 Score=23.93 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=24.0
Q ss_pred cccEEEEeeCCCEEEEEec--CeEEEEecCC
Q 010933 325 SISDIKFANDGQHLLSRDY--MNLKLWDIRM 353 (497)
Q Consensus 325 ~i~~~~~s~~g~~l~~~~~--~~i~lwd~~~ 353 (497)
..+.+.++|++++|..++- +.|++|..+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4688999999999988753 8999998753
No 484
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=59.38 E-value=2.5e+02 Score=29.99 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=77.1
Q ss_pred CCCCeeEEEeC---C----CCCEEEEEcCCeEEEEeCccC------ceeeEEeecCC-CccC---CCCCCeEEEEEeCCC
Q 010933 213 HDFNINSISNN---S----DCETFVSADDLRINLWNLEIS------DQCFNIVDMKP-SNMD---DLTEVITSAEFHPIY 275 (497)
Q Consensus 213 h~~~v~~~~~~---~----~~~~l~~~~d~~i~iwd~~~~------~~~~~~~~~~~-~~~~---~~~~~i~~~~~~~~~ 275 (497)
-..+|..++|. . ..++|++=....+.|+...-. ......++..+ .++. ....+...++|+|..
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 35677778876 2 223444447777888773211 10100111111 0111 123466789999987
Q ss_pred CcEEEEEeCCCeEEEEEccCCccccc-ccceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCC
Q 010933 276 CNLLAYSSSRGFVRLVDMRQSALCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 353 (497)
Q Consensus 276 ~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~ 353 (497)
...||+....|...|||+..+..... ..+.... .. +....-.........+.|.++-..|+..+...+.++|++.
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~--gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-IS--GSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccC-CC--ccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 68999999999999999932211110 0011100 00 0000001112556789998888888888888999999986
No 485
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=58.87 E-value=2.5e+02 Score=29.87 Aligned_cols=81 Identities=6% Similarity=-0.051 Sum_probs=46.5
Q ss_pred ccccEEEEeeCCCEEEEE-ecCeEEEEecCCCCceeeee-e--eccccccccccc-CCCCCccceeEEEEcCCCCEEEEE
Q 010933 324 ASISDIKFANDGQHLLSR-DYMNLKLWDIRMDSTPVATF-K--IHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATG 398 (497)
Q Consensus 324 ~~i~~~~~s~~g~~l~~~-~~~~i~lwd~~~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~s~ 398 (497)
..|.++....-+.+++.. +||+|.++|..+ -+.+... . .....+..+... +.-.++-....++|||.+.-++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 456677766667777766 779999999876 4433333 0 001111111000 000011011358999999999999
Q ss_pred eCCCcEE
Q 010933 399 SYSNLLR 405 (497)
Q Consensus 399 ~~dg~i~ 405 (497)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999866
No 486
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.68 E-value=2.2e+02 Score=31.33 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.9
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCC
Q 010933 389 SGDGLHFATGSYSNLLRIFSHGVGS 413 (497)
Q Consensus 389 s~~~~~l~s~~~dg~i~vw~~~~~~ 413 (497)
++++..++++..||.+..||+..+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 7789999999999999999998863
No 487
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=57.05 E-value=20 Score=19.52 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=17.6
Q ss_pred EEEEEeCCCcEEEEEcCCCCc
Q 010933 394 HFATGSYSNLLRIFSHGVGSA 414 (497)
Q Consensus 394 ~l~s~~~dg~i~vw~~~~~~~ 414 (497)
.++.++.+|.++.+|.++++.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcE
Confidence 577888899999999988744
No 488
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=55.87 E-value=3.8e+02 Score=31.00 Aligned_cols=79 Identities=9% Similarity=0.166 Sum_probs=44.4
Q ss_pred cceEEEEEcCCCCE-EEEeecCCeEEEEEecCCccccchhhhhhhcccCCCCCCcccccccccccCcccccccccccccc
Q 010933 33 DIVSAIEFDKTGDY-LAVGDRGGRVILFETVGGKNHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 111 (497)
Q Consensus 33 ~~I~~i~~sp~g~~-lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 111 (497)
+.|.+...+++|+. +.++.....+.+|+.....-. ..|.......+.+-. ..
T Consensus 438 ~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~---------------~~p~~~~~L~L~dG~------------a~ 490 (1774)
T PF11725_consen 438 DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAP---------------PTPRKTKTLQLADGK------------AQ 490 (1774)
T ss_pred hhcccccccCCCceeeeecCCCcceeeeccCccccc---------------cCccceeeeeccCCc------------hh
Confidence 45566667788776 556655556688887653210 001111222333333 44
Q ss_pred eeEEEEEecCCCCEEEEEeCCccEEEeecCc
Q 010933 112 INRVRWCAAPNGSMFILSTNDKTIKLWKVRD 142 (497)
Q Consensus 112 i~~l~~~~s~~~~~l~s~s~d~~i~iw~~~~ 142 (497)
..+|.+ +++ .|+.+..+|.++.=++..
T Consensus 491 A~~VgL--s~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 491 AQSVGL--SND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred hhheee--cCC--eEEEEeCCCCEEeccccc
Confidence 667777 344 688888888777666543
No 489
>PHA02790 Kelch-like protein; Provisional
Probab=55.84 E-value=2.2e+02 Score=28.29 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=14.1
Q ss_pred CCCcEEEEEeCC-----CeEEEEEccCC
Q 010933 274 IYCNLLAYSSSR-----GFVRLVDMRQS 296 (497)
Q Consensus 274 ~~~~~l~~~~~d-----g~i~v~d~~~~ 296 (497)
++ +..++|+.+ ..+..||..+.
T Consensus 446 ~~-~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 446 DN-KLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CC-EEEEECCcCCCcccceEEEEECCCC
Confidence 44 677777754 35667777654
No 490
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=55.30 E-value=82 Score=32.81 Aligned_cols=134 Identities=12% Similarity=0.139 Sum_probs=74.1
Q ss_pred CcceEEEeecCCccceeeeeeccCCCCCeeEEEeCCCCCEEEEE-cCCeEEE--------EeCccCceeeEEeecCCCcc
Q 010933 189 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINL--------WNLEISDQCFNIVDMKPSNM 259 (497)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~i--------wd~~~~~~~~~~~~~~~~~~ 259 (497)
.+.+.++........++...++......+.++.+++. .+..| -||++-. ||.+ .... .
T Consensus 556 ~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e-p~~~----------~ 622 (925)
T KOG3522|consen 556 TSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE-PNIS----------I 622 (925)
T ss_pred cceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC-Cccc----------c
Confidence 4455566555333333443333444455555555432 23333 4444444 4433 2221 1
Q ss_pred CCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEEeeCCCEEE
Q 010933 260 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 260 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
..-..++.+.++..+ ++.++.+|.+.++...+.... ...+.| ..|...|++|.+..+|-+++
T Consensus 623 ~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~----~~leah----------qee~~~Vthm~~~~~gVwva 684 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRS----WDLEAH----------QEEAHSVTHMLYLDNGVWVA 684 (925)
T ss_pred ccCCccccchhhhhc----eeeeecCCceEEEechhcccc----chhHHH----------HhhcceEEEEEeeCCceEEE
Confidence 223456777777654 566788999999998765432 122221 22346799999998888877
Q ss_pred EEecCeEEEEecCC
Q 010933 340 SRDYMNLKLWDIRM 353 (497)
Q Consensus 340 ~~~~~~i~lwd~~~ 353 (497)
.++...+++++..+
T Consensus 685 fasG~~~rlfhtet 698 (925)
T KOG3522|consen 685 FASGDEERLFHTET 698 (925)
T ss_pred EcCCCEEEEecccc
Confidence 77656666666544
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=54.30 E-value=35 Score=34.80 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=46.3
Q ss_pred CCCCCeeEEEeCCCCCEEEEE-cCCeEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEE
Q 010933 212 AHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 290 (497)
Q Consensus 212 ~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 290 (497)
.....+.++.-+|.|+.++.+ .||.|++|+.. ..+..+++ ....+-..+.|...| |+++..|+++.-
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~-~r~qski~--------~~~~p~~nlv~tnhg---l~~~tsdrr~la 79 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFI-PRRQSKIC--------EEAKPKENLVFTNHG---LVTATSDRRALA 79 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeec-ccchhhhh--------hhcCCccceeeeccc---eEEEeccchhhe
Confidence 334567788889999999999 99999999987 33333321 122334556666655 666777776666
Q ss_pred EE
Q 010933 291 VD 292 (497)
Q Consensus 291 ~d 292 (497)
|.
T Consensus 80 ~~ 81 (1636)
T KOG3616|consen 80 WK 81 (1636)
T ss_pred ee
Confidence 64
No 492
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=54.01 E-value=2e+02 Score=31.65 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=72.6
Q ss_pred CCeEEEEeCcc----CceeeEEeecCCCccCCCCCCeEEEEEeCCCCcEEEEEeCCCeEEEEEc-cCCcccccccceecc
Q 010933 234 DLRINLWNLEI----SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM-RQSALCDHSARILRD 308 (497)
Q Consensus 234 d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~ 308 (497)
-|.++++|+-. .+++.....+|.-..+..+++|..++=- +| +|++ +...+|.+|++ +...++. -.|-.
T Consensus 1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G--~l~~-~~GqKI~v~~l~r~~~lig---VaFiD 1136 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG--HLLS-SQGQKIIVRKLDRDSELIG---VAFID 1136 (1366)
T ss_pred cccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc--EEEE-ccCcEEEEEEeccCCccee---eEEec
Confidence 47899998642 2322222222222234456677666533 34 3443 34568999999 4433221 01100
Q ss_pred cccccCCccccccccccccEEEEeeCCCEEEEEec-CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEE
Q 010933 309 AAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 387 (497)
Q Consensus 309 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (497)
-++.-....--+++|+.|+- ..|.+.-.+.....+..+....... .+.++.
T Consensus 1137 ---------------~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l-------------~v~s~E 1188 (1366)
T KOG1896|consen 1137 ---------------LPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPL-------------NVYSTE 1188 (1366)
T ss_pred ---------------cceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchh-------------hceeee
Confidence 12222222223456666653 7777776653233333332222211 124677
Q ss_pred EcCCCC--EEEEEeCCCcEEEEEcCC
Q 010933 388 VSGDGL--HFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 388 ~s~~~~--~l~s~~~dg~i~vw~~~~ 411 (497)
|--||. +++++..|++|++|-...
T Consensus 1189 FLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1189 FLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred eEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 766665 567888999999987654
No 493
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=52.60 E-value=28 Score=20.25 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=16.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCC
Q 010933 391 DGLHFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 391 ~~~~l~s~~~dg~i~vw~~~~ 411 (497)
.+..|+.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356899999999999999764
No 494
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=52.44 E-value=51 Score=21.16 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCEEEEeec-----CCeEEEEEec
Q 010933 34 IVSAIEFDKTGDYLAVGDR-----GGRVILFETV 62 (497)
Q Consensus 34 ~I~~i~~sp~g~~lasg~~-----dg~i~iwd~~ 62 (497)
.+.++++-|||++|++|.. +....|+.+.
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln 35 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLN 35 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEEC
Confidence 4678999999999999963 2345555554
No 495
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=50.37 E-value=1.8e+02 Score=25.69 Aligned_cols=113 Identities=9% Similarity=0.091 Sum_probs=62.0
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceecccccccCCccccccccccccEEEE----eeCCCE--EEEEec
Q 010933 270 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF----ANDGQH--LLSRDY 343 (497)
Q Consensus 270 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----s~~g~~--l~~~~~ 343 (497)
.-+|+. ..+++.-..+-+++||+...++ +.++. +..+.+.+ --.|+- |+++++
T Consensus 62 ~t~P~k-S~vItt~Kk~Gl~VYDLsGkqL-----qs~~~---------------Gk~NNVDLrygF~LgG~~idiaaASd 120 (364)
T COG4247 62 ATNPDK-SLVITTVKKAGLRVYDLSGKQL-----QSVNP---------------GKYNNVDLRYGFQLGGQSIDIAAASD 120 (364)
T ss_pred cCCcCc-ceEEEeeccCCeEEEecCCCee-----eecCC---------------CcccccccccCcccCCeEEEEEeccc
Confidence 345665 6777777788899999976543 22221 22222222 112332 444544
Q ss_pred ---CeEEEEecCCCCceeeeeeecccccccccccCCCCCccceeEEEEcCC---CC-EEEEEeCCCcEEEEEcCC
Q 010933 344 ---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD---GL-HFATGSYSNLLRIFSHGV 411 (497)
Q Consensus 344 ---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~-~l~s~~~dg~i~vw~~~~ 411 (497)
..|.+|.+..+...+..+.....+.. ..+.....++...+ |. ++++...+|.|.-|.+-.
T Consensus 121 R~~~~i~~y~Idp~~~~L~sitD~n~p~s--------s~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d 187 (364)
T COG4247 121 RQNDKIVFYKIDPNPQYLESITDSNAPYS--------SSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLID 187 (364)
T ss_pred ccCCeEEEEEeCCCccceeeccCCCCccc--------cCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEe
Confidence 78899988765555655544322211 01111235555443 32 566777789998888754
No 496
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=49.91 E-value=3.5e+02 Score=28.84 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=47.5
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccCCcccccccceeccccc----ccCCccccccccccccEEEEeeCCCEEE
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE----SHGSKSFFTEIIASISDIKFANDGQHLL 339 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 339 (497)
..|.++....-+ .+++....||.|.++|-.+.+.+... ........ .....-.| +....+..++|||++-.++
T Consensus 260 ~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~-~~~~~~~~~v~s~~~~Gf~f-p~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 260 KRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNET-RTNGEPPNTVTSLFQAGFHF-PCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred CeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhccc-ccccCCcccccccccccccc-ccCCCCceEEECcccceEE
Confidence 557777777777 88999999999999999886544221 00000000 00000011 1122566789999987777
Q ss_pred EEe-cCeEE
Q 010933 340 SRD-YMNLK 347 (497)
Q Consensus 340 ~~~-~~~i~ 347 (497)
.-+ +|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 653 46644
No 497
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=48.40 E-value=3.6e+02 Score=28.58 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=19.7
Q ss_pred CeeEEEeCCCCCEEEEEcCCeEEEEeCcc
Q 010933 216 NINSISNNSDCETFVSADDLRINLWNLEI 244 (497)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~ 244 (497)
.|.+++.+.+.. ++-..+|.|+-|-++.
T Consensus 230 ~~~qisvs~~Hs-lvLT~~g~Vys~GlN~ 257 (1267)
T KOG0783|consen 230 KVIQISVSHTHS-LVLTKFGSVYSWGLNG 257 (1267)
T ss_pred ceEEEEeeccee-EEEeecceEEEeecCc
Confidence 577788777664 4444788899998773
No 498
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=48.26 E-value=4.5e+02 Score=29.63 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=13.7
Q ss_pred cCCCeEEEEEecCCCEEEE
Q 010933 468 LSSKLLHLAWHPTTNLIAC 486 (497)
Q Consensus 468 ~~~~i~~l~~~p~~~~la~ 486 (497)
+-..+.+++.+|||..+++
T Consensus 660 ~lnsp~alaVsPdg~v~IA 678 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIA 678 (1899)
T ss_pred ccCCcceEEECCCCcEEEe
Confidence 3346678899999987654
No 499
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=46.34 E-value=4.3e+02 Score=28.86 Aligned_cols=200 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred eEEEEeCccCceeeEEeecCCCccCCCCCCeEEEEEeCCCCc-EEEEEeC-----------CCeEEEEEccCCccccccc
Q 010933 236 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSS-----------RGFVRLVDMRQSALCDHSA 303 (497)
Q Consensus 236 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~-----------dg~i~v~d~~~~~~~~~~~ 303 (497)
.|+++|.. ++..+..+.+. .....-.+..+.|+..... +++++.. +|.++.|++-.........
T Consensus 854 ~I~~~d~~-s~~~~~~~~l~---~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell 929 (1205)
T KOG1898|consen 854 SIRVFDPK-SGKIICLVELG---QNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL 929 (1205)
T ss_pred eEEEEcCC-CCceEEEEeec---CCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee
Q ss_pred ceecccccccCCccccccccccccEEEEeeCCCEEEEEecCeEEEEecCCCCceeeeeeecccccccccccCCCCCccce
Q 010933 304 RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 383 (497)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (497)
...+. +-.-.++.|.+.++++|-...+++||+.. .++++......-+.
T Consensus 930 h~T~~----------------~~~v~Ai~~f~~~~LagvG~~l~~YdlG~-K~lLRk~e~k~~p~--------------- 977 (1205)
T KOG1898|consen 930 HKTEI----------------PGPVGAICPFQGRVLAGVGRFLRLYDLGK-KKLLRKCELKFIPN--------------- 977 (1205)
T ss_pred eccCC----------------CccceEEeccCCEEEEecccEEEEeeCCh-HHHHhhhhhccCce---------------
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEcCCCCcceEEEeccCcceeeeEeecCCCcccccccceeEeeccCc-eecCCCCCc
Q 010933 384 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRGLYRQA-HENSSSGHH 462 (497)
Q Consensus 384 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d~~-~iw~~~~~~ 462 (497)
.-....-.+..|+.|...-.++++..+........+....-+-+-.+.... |.-. +|.+..-|. .+-......
T Consensus 978 ~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~t-----vagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 978 RISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDT-----VAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred EEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCc-----eeeccccCcEEEEECCCcc
Q ss_pred ccccccCCCeEEEEE
Q 010933 463 ELSYNLSSKLLHLAW 477 (497)
Q Consensus 463 ~~~~~~~~~i~~l~~ 477 (497)
.....++.....++|
T Consensus 1052 ~e~~~edpt~~k~~~ 1066 (1205)
T KOG1898|consen 1052 SEEASEDPTELKIAW 1066 (1205)
T ss_pred hhhhccCCcccccee
No 500
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=45.98 E-value=2.9e+02 Score=26.81 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.5
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCeEEEEEccC
Q 010933 264 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 295 (497)
Q Consensus 264 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 295 (497)
..|..++..+.. +.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 449999999998 9999999999999999975
Done!